Query 014154
Match_columns 430
No_of_seqs 605 out of 3230
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 06:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 3.5E-44 1.2E-48 323.1 36.6 295 40-375 23-320 (321)
2 1nr0_A Actin interacting prote 100.0 1.7E-43 5.8E-48 346.6 39.3 340 15-375 161-610 (611)
3 1vyh_C Platelet-activating fac 100.0 3.1E-43 1.1E-47 328.0 37.8 288 42-374 101-409 (410)
4 2ynn_A Coatomer subunit beta'; 100.0 1.6E-41 5.4E-46 303.7 39.9 293 40-376 4-302 (304)
5 1got_B GT-beta; complex (GTP-b 100.0 2.4E-41 8.1E-46 307.5 41.7 293 40-373 46-340 (340)
6 2pbi_B Guanine nucleotide-bind 100.0 2.5E-41 8.6E-46 308.8 41.0 298 40-373 55-354 (354)
7 2ymu_A WD-40 repeat protein; u 100.0 3.1E-41 1.1E-45 329.0 41.0 312 15-373 234-577 (577)
8 1nr0_A Actin interacting prote 100.0 4.4E-41 1.5E-45 329.4 41.5 332 13-376 28-522 (611)
9 3ow8_A WD repeat-containing pr 100.0 6.8E-41 2.3E-45 301.6 38.6 272 15-331 49-320 (321)
10 3iz6_a 40S ribosomal protein R 100.0 6.1E-42 2.1E-46 316.2 32.0 321 23-376 45-375 (380)
11 1vyh_C Platelet-activating fac 100.0 3.1E-41 1E-45 314.6 35.5 270 15-331 121-410 (410)
12 4gqb_B Methylosome protein 50; 100.0 7.1E-41 2.4E-45 303.8 35.5 289 54-376 33-331 (344)
13 4g56_B MGC81050 protein; prote 100.0 3E-41 1E-45 308.6 32.5 314 16-377 18-344 (357)
14 2ymu_A WD-40 repeat protein; u 100.0 2.7E-39 9.2E-44 315.4 43.0 315 15-376 193-539 (577)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-39 6.5E-44 295.5 38.9 303 40-378 6-337 (345)
16 4ery_A WD repeat-containing pr 100.0 3.1E-39 1.1E-43 290.1 38.5 291 40-375 14-311 (312)
17 1got_B GT-beta; complex (GTP-b 100.0 4E-39 1.4E-43 292.9 38.1 267 15-329 68-340 (340)
18 2pm9_A Protein WEB1, protein t 100.0 9.3E-40 3.2E-44 305.5 30.7 332 16-376 27-414 (416)
19 3frx_A Guanine nucleotide-bind 100.0 2.2E-38 7.5E-43 285.3 38.1 292 40-376 8-317 (319)
20 2ynn_A Coatomer subunit beta'; 100.0 2.2E-38 7.5E-43 283.3 37.7 274 15-332 26-302 (304)
21 1erj_A Transcriptional repress 100.0 4.2E-38 1.4E-42 291.9 39.2 315 22-376 38-389 (393)
22 2xzm_R RACK1; ribosome, transl 100.0 4.2E-38 1.4E-42 286.5 37.9 297 40-376 12-340 (343)
23 2hes_X YDR267CP; beta-propelle 100.0 7E-38 2.4E-42 283.4 37.6 302 40-376 5-328 (330)
24 2pbi_B Guanine nucleotide-bind 100.0 1.3E-37 4.3E-42 284.3 38.6 268 15-329 77-354 (354)
25 1r5m_A SIR4-interacting protei 100.0 2.1E-38 7.1E-43 296.8 34.2 313 16-375 60-424 (425)
26 3iz6_a 40S ribosomal protein R 100.0 8.3E-39 2.8E-43 295.2 30.9 282 15-334 79-377 (380)
27 3frx_A Guanine nucleotide-bind 100.0 1.6E-37 5.4E-42 279.7 36.6 275 15-333 31-318 (319)
28 4gqb_B Methylosome protein 50; 100.0 3.5E-38 1.2E-42 286.1 31.9 285 13-335 40-334 (344)
29 3vl1_A 26S proteasome regulato 100.0 3E-38 1E-42 295.7 32.3 323 15-376 69-419 (420)
30 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-36 4.1E-41 287.1 42.3 305 14-377 129-443 (445)
31 1gxr_A ESG1, transducin-like e 100.0 3.1E-36 1E-40 273.2 39.2 310 18-374 25-335 (337)
32 4aow_A Guanine nucleotide-bind 100.0 3.7E-36 1.3E-40 273.2 39.0 319 19-376 9-337 (340)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-36 5.2E-41 276.3 36.3 284 15-338 29-341 (345)
34 1erj_A Transcriptional repress 100.0 2.1E-36 7.3E-41 280.4 37.7 283 13-333 74-390 (393)
35 4g56_B MGC81050 protein; prote 100.0 3.8E-37 1.3E-41 281.4 31.0 281 15-334 55-345 (357)
36 2xzm_R RACK1; ribosome, transl 100.0 1.6E-36 5.6E-41 276.0 34.6 276 15-334 40-342 (343)
37 3v7d_B Cell division control p 100.0 4.5E-36 1.5E-40 284.7 38.4 317 11-373 129-460 (464)
38 3zwl_B Eukaryotic translation 100.0 6.6E-36 2.3E-40 274.4 38.3 300 40-376 23-346 (369)
39 1pgu_A Actin interacting prote 100.0 8.7E-37 3E-41 299.8 34.0 329 16-376 175-614 (615)
40 2hes_X YDR267CP; beta-propelle 100.0 2.7E-36 9.3E-41 272.9 34.5 278 14-332 24-328 (330)
41 3ei3_B DNA damage-binding prot 100.0 1E-36 3.5E-41 281.8 32.0 293 40-376 64-382 (383)
42 4ery_A WD repeat-containing pr 100.0 7E-36 2.4E-40 268.3 36.5 271 15-331 36-311 (312)
43 1sq9_A Antiviral protein SKI8; 100.0 3.9E-36 1.3E-40 279.2 35.8 307 40-376 7-395 (397)
44 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-36 6.2E-41 307.5 34.3 152 218-374 440-659 (902)
45 1sq9_A Antiviral protein SKI8; 100.0 3.4E-36 1.2E-40 279.5 33.5 302 7-334 19-397 (397)
46 4h5i_A Guanine nucleotide-exch 100.0 2.8E-37 9.7E-42 283.0 25.7 291 50-377 15-344 (365)
47 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-36 7.3E-41 320.1 36.0 330 15-377 628-1075(1249)
48 3vl1_A 26S proteasome regulato 100.0 2E-36 6.8E-41 283.3 31.0 274 62-376 65-365 (420)
49 3dm0_A Maltose-binding peripla 100.0 1.1E-35 3.9E-40 295.7 38.2 296 40-375 373-692 (694)
50 4aow_A Guanine nucleotide-bind 100.0 3.3E-35 1.1E-39 266.9 37.6 277 15-334 52-339 (340)
51 3odt_A Protein DOA1; ubiquitin 100.0 4.7E-35 1.6E-39 262.6 37.5 288 40-377 9-297 (313)
52 3sfz_A APAF-1, apoptotic pepti 100.0 1.6E-36 5.5E-41 321.0 32.6 337 14-377 713-1159(1249)
53 3gre_A Serine/threonine-protei 100.0 1.7E-36 6E-41 285.3 28.9 310 28-373 47-437 (437)
54 2pm7_B Protein transport prote 100.0 1.5E-35 5.3E-40 263.9 33.1 252 42-376 2-285 (297)
55 2oaj_A Protein SNI1; WD40 repe 100.0 6.9E-36 2.4E-40 303.2 34.7 329 15-376 30-605 (902)
56 4gga_A P55CDC, cell division c 100.0 9.1E-35 3.1E-39 272.0 38.8 273 17-338 118-401 (420)
57 4aez_A CDC20, WD repeat-contai 100.0 8.8E-35 3E-39 270.4 37.6 276 14-338 103-386 (401)
58 2j04_B YDR362CP, TAU91; beta p 100.0 7.4E-37 2.5E-41 291.1 23.8 326 17-377 176-518 (524)
59 3k26_A Polycomb protein EED; W 100.0 9.2E-36 3.2E-40 273.2 29.0 305 44-375 13-365 (366)
60 4e54_B DNA damage-binding prot 100.0 7.5E-36 2.6E-40 280.6 28.8 294 44-377 114-431 (435)
61 3zwl_B Eukaryotic translation 100.0 3.1E-34 1E-38 263.3 38.9 283 15-338 45-352 (369)
62 2pm9_A Protein WEB1, protein t 100.0 1.3E-35 4.5E-40 277.3 29.1 285 62-378 21-339 (416)
63 4ggc_A P55CDC, cell division c 100.0 3.7E-34 1.3E-38 257.5 37.3 275 17-334 38-317 (318)
64 3i2n_A WD repeat-containing pr 100.0 3.3E-35 1.1E-39 268.6 30.7 300 43-377 12-354 (357)
65 1k8k_C P40, ARP2/3 complex 41 100.0 7.3E-35 2.5E-39 268.0 33.1 289 46-376 5-361 (372)
66 3dm0_A Maltose-binding peripla 100.0 1E-34 3.5E-39 288.9 36.1 284 6-331 384-692 (694)
67 1r5m_A SIR4-interacting protei 100.0 9.6E-35 3.3E-39 271.9 33.8 319 23-377 24-362 (425)
68 4aez_A CDC20, WD repeat-contai 100.0 4.7E-34 1.6E-38 265.6 36.8 290 43-377 85-381 (401)
69 4a11_B DNA excision repair pro 100.0 1E-34 3.5E-39 270.3 32.4 317 22-378 21-367 (408)
70 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-33 4.7E-38 253.1 36.4 272 15-341 30-305 (313)
71 1gxr_A ESG1, transducin-like e 100.0 3.8E-33 1.3E-37 252.8 38.9 267 16-330 65-335 (337)
72 3k26_A Polycomb protein EED; W 100.0 3.4E-35 1.2E-39 269.5 25.4 289 15-332 35-366 (366)
73 3dw8_B Serine/threonine-protei 100.0 1.4E-34 4.9E-39 272.9 30.0 311 48-375 27-445 (447)
74 3mkq_A Coatomer beta'-subunit; 100.0 4.1E-34 1.4E-38 290.0 35.4 319 15-376 26-386 (814)
75 1k8k_C P40, ARP2/3 complex 41 100.0 5.7E-34 2E-38 262.0 33.0 279 15-335 21-364 (372)
76 1pgu_A Actin interacting prote 100.0 2.9E-33 1E-37 274.7 38.5 311 13-375 28-365 (615)
77 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-33 5.4E-38 285.7 37.2 292 40-376 4-302 (814)
78 3dwl_C Actin-related protein 2 100.0 3.4E-35 1.2E-39 270.9 22.7 244 48-331 10-280 (377)
79 1p22_A F-BOX/WD-repeat protein 100.0 5.5E-34 1.9E-38 268.0 31.2 270 13-338 142-420 (435)
80 3bg1_A Protein SEC13 homolog; 100.0 5.2E-35 1.8E-39 262.8 22.8 250 44-376 8-293 (316)
81 3v7d_B Cell division control p 100.0 5.9E-33 2E-37 263.3 37.6 294 41-377 113-422 (464)
82 3i2n_A WD repeat-containing pr 100.0 1.5E-33 5.1E-38 257.7 32.3 282 17-335 34-356 (357)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-33 5.5E-38 262.1 32.4 282 16-376 49-342 (402)
84 3ei3_B DNA damage-binding prot 100.0 3E-33 1E-37 258.5 32.3 269 15-332 87-382 (383)
85 4e54_B DNA damage-binding prot 100.0 4.1E-34 1.4E-38 268.8 26.6 290 7-336 122-434 (435)
86 1p22_A F-BOX/WD-repeat protein 100.0 8.9E-33 3E-37 259.8 35.0 272 47-377 131-415 (435)
87 4a11_B DNA excision repair pro 100.0 1.2E-32 4E-37 256.4 34.0 324 15-376 57-405 (408)
88 4gga_A P55CDC, cell division c 100.0 9.3E-32 3.2E-36 251.6 39.1 270 66-377 117-396 (420)
89 2pm7_B Protein transport prote 100.0 7.5E-33 2.6E-37 246.5 30.1 235 15-331 22-284 (297)
90 3jrp_A Fusion protein of prote 100.0 7.1E-33 2.4E-37 255.2 30.0 255 40-376 2-287 (379)
91 3mmy_A MRNA export factor; mRN 100.0 1.8E-32 6.2E-37 251.4 32.6 292 40-376 30-346 (368)
92 1yfq_A Cell cycle arrest prote 100.0 1.2E-32 4E-37 250.3 31.0 282 43-374 5-322 (342)
93 4h5i_A Guanine nucleotide-exch 100.0 2.5E-32 8.5E-37 250.2 32.0 279 25-332 44-343 (365)
94 3gre_A Serine/threonine-protei 100.0 2E-33 6.7E-38 264.5 25.2 285 15-329 77-437 (437)
95 3f3f_A Nucleoporin SEH1; struc 100.0 9.5E-32 3.3E-36 244.5 34.5 275 42-339 4-344 (351)
96 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-33 7.3E-38 267.3 24.3 232 124-376 174-428 (524)
97 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-31 3.8E-36 253.1 35.7 282 41-377 110-392 (445)
98 3bg1_A Protein SEC13 homolog; 100.0 9.7E-33 3.3E-37 248.0 25.8 235 15-331 26-292 (316)
99 3dwl_C Actin-related protein 2 100.0 6.8E-33 2.3E-37 255.5 25.0 274 15-330 24-377 (377)
100 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-32 3.8E-37 250.8 25.9 273 62-374 45-331 (343)
101 4ggc_A P55CDC, cell division c 100.0 1.4E-30 5E-35 234.0 39.0 273 62-377 34-316 (318)
102 3vu4_A KMHSV2; beta-propeller 100.0 4.2E-32 1.5E-36 247.8 27.4 286 40-376 10-336 (355)
103 3dw8_B Serine/threonine-protei 100.0 2.2E-31 7.5E-36 251.1 28.7 292 15-331 41-445 (447)
104 1yfq_A Cell cycle arrest prote 100.0 1.4E-30 4.9E-35 236.5 31.8 276 15-329 24-321 (342)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.1E-30 1.1E-34 243.4 34.9 290 51-376 6-391 (450)
106 1l0q_A Surface layer protein; 100.0 2.3E-29 7.9E-34 233.1 39.6 274 15-340 3-283 (391)
107 2w18_A PALB2, fancn, partner a 100.0 4.4E-30 1.5E-34 224.7 32.1 299 38-374 24-355 (356)
108 3jro_A Fusion protein of prote 100.0 3.4E-31 1.2E-35 265.2 28.7 252 43-376 3-285 (753)
109 2w18_A PALB2, fancn, partner a 100.0 2.4E-30 8.1E-35 226.4 29.5 279 9-330 49-355 (356)
110 2xyi_A Probable histone-bindin 100.0 4.1E-30 1.4E-34 241.1 32.7 258 44-333 123-411 (430)
111 3jrp_A Fusion protein of prote 100.0 2.1E-30 7.2E-35 238.7 28.5 241 15-337 24-292 (379)
112 3f3f_A Nucleoporin SEH1; struc 100.0 5.2E-30 1.8E-34 233.0 30.7 248 101-377 9-338 (351)
113 3bws_A Protein LP49; two-domai 100.0 5.8E-29 2E-33 233.6 37.5 312 19-376 94-432 (433)
114 2j04_A TAU60, YPL007P, hypothe 100.0 6.1E-31 2.1E-35 244.7 23.1 262 54-375 18-296 (588)
115 3mmy_A MRNA export factor; mRN 100.0 8.8E-30 3E-34 233.4 29.9 275 15-331 55-345 (368)
116 2xyi_A Probable histone-bindin 100.0 6.2E-30 2.1E-34 239.9 27.2 253 102-377 127-411 (430)
117 3lrv_A PRE-mRNA-splicing facto 100.0 1E-29 3.5E-34 231.2 25.8 262 15-331 49-332 (343)
118 4gq1_A NUP37; propeller, trans 100.0 1.8E-30 6.2E-35 240.4 20.7 228 124-373 102-386 (393)
119 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-29 3.5E-34 236.4 25.3 235 125-378 49-301 (402)
120 1l0q_A Surface layer protein; 100.0 1.2E-27 4E-32 221.6 36.0 266 66-377 3-276 (391)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.1E-28 1.4E-32 229.0 32.9 243 54-332 105-391 (450)
122 4gq1_A NUP37; propeller, trans 100.0 1.7E-29 5.7E-34 233.9 22.8 246 15-331 102-388 (393)
123 3jro_A Fusion protein of prote 100.0 2.1E-29 7.2E-34 252.2 24.4 236 15-332 22-285 (753)
124 2j04_A TAU60, YPL007P, hypothe 100.0 5.1E-29 1.7E-33 231.9 24.1 253 15-331 28-296 (588)
125 3vu4_A KMHSV2; beta-propeller 100.0 2.4E-27 8.1E-32 216.4 32.2 262 16-334 33-338 (355)
126 3bws_A Protein LP49; two-domai 100.0 1.2E-26 4.2E-31 217.7 34.1 268 15-332 135-432 (433)
127 1nir_A Nitrite reductase; hemo 100.0 1.5E-25 5.1E-30 215.0 33.5 313 15-378 150-516 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.6E-24 8.9E-29 200.3 33.4 290 17-359 78-410 (415)
129 1nir_A Nitrite reductase; hemo 99.9 3.4E-23 1.2E-27 198.6 32.8 290 15-339 191-521 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.6E-24 2.3E-28 197.5 26.8 222 124-376 144-387 (415)
131 2ojh_A Uncharacterized protein 99.9 1.4E-23 4.8E-28 185.9 25.4 256 19-366 17-292 (297)
132 3u4y_A Uncharacterized protein 99.9 2.7E-22 9.3E-27 181.1 30.9 273 14-377 10-305 (331)
133 1pby_B Quinohemoprotein amine 99.9 1.4E-22 4.8E-27 183.2 27.9 279 16-342 3-320 (337)
134 1ri6_A Putative isomerase YBHE 99.9 1.4E-21 4.9E-26 177.0 33.0 297 17-358 8-334 (343)
135 3vgz_A Uncharacterized protein 99.9 2E-21 6.9E-26 176.9 34.0 260 56-360 45-327 (353)
136 1ri6_A Putative isomerase YBHE 99.9 5.7E-21 1.9E-25 173.1 31.2 270 67-376 6-308 (343)
137 1pby_B Quinohemoprotein amine 99.9 1.2E-21 4.2E-26 177.0 26.5 267 66-377 2-311 (337)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-21 4.1E-26 195.3 26.5 311 15-377 36-436 (706)
139 1k32_A Tricorn protease; prote 99.9 3.1E-21 1E-25 200.2 30.4 191 164-375 297-501 (1045)
140 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-21 5.9E-26 194.8 27.2 307 14-360 27-423 (723)
141 2ecf_A Dipeptidyl peptidase IV 99.9 3.3E-21 1.1E-25 193.2 28.5 310 15-375 49-458 (741)
142 2ecf_A Dipeptidyl peptidase IV 99.9 4.9E-21 1.7E-25 192.0 26.2 294 54-375 39-412 (741)
143 2oit_A Nucleoporin 214KDA; NH2 99.9 3.3E-22 1.1E-26 186.7 16.3 210 163-377 37-279 (434)
144 1k32_A Tricorn protease; prote 99.9 1.6E-20 5.5E-25 194.8 29.6 298 21-378 262-639 (1045)
145 1xfd_A DIP, dipeptidyl aminope 99.9 2.9E-21 9.8E-26 193.2 21.5 292 54-376 19-393 (723)
146 3scy_A Hypothetical bacterial 99.9 1.7E-18 5.9E-23 158.2 35.7 301 15-355 14-360 (361)
147 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-19 4.3E-24 164.7 25.9 239 62-342 8-335 (349)
148 3hfq_A Uncharacterized protein 99.9 1.2E-18 4.2E-23 158.2 31.4 278 21-337 13-324 (347)
149 3o4h_A Acylamino-acid-releasin 99.9 3.9E-20 1.3E-24 180.2 22.0 268 54-375 24-314 (582)
150 2z3z_A Dipeptidyl aminopeptida 99.9 5.3E-19 1.8E-23 176.3 30.4 281 18-334 95-437 (706)
151 3vgz_A Uncharacterized protein 99.8 2E-18 7E-23 156.9 29.6 228 132-377 68-304 (353)
152 2ojh_A Uncharacterized protein 99.8 3.5E-19 1.2E-23 157.5 23.4 219 130-377 19-259 (297)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 2.4E-19 8.4E-24 167.3 22.9 196 124-333 49-279 (434)
154 3u4y_A Uncharacterized protein 99.8 2E-18 7E-23 155.6 26.9 226 124-377 11-253 (331)
155 3hfq_A Uncharacterized protein 99.8 1.8E-17 6.1E-22 150.5 31.7 238 125-376 52-317 (347)
156 1jmx_B Amine dehydrogenase; ox 99.8 3.2E-18 1.1E-22 155.4 25.4 231 124-377 12-326 (349)
157 1z68_A Fibroblast activation p 99.8 5.3E-19 1.8E-23 176.6 21.5 325 14-376 26-443 (719)
158 3scy_A Hypothetical bacterial 99.8 1.1E-16 3.9E-21 146.0 35.0 238 125-376 63-337 (361)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.3E-17 2.5E-21 147.5 33.0 284 15-333 3-342 (365)
160 3o4h_A Acylamino-acid-releasin 99.8 4.7E-18 1.6E-22 165.5 26.3 257 15-332 34-315 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-16 4.4E-21 145.9 27.9 236 125-376 53-341 (365)
162 2oiz_A Aromatic amine dehydrog 99.8 7E-16 2.4E-20 140.5 30.7 294 22-359 29-360 (361)
163 3pe7_A Oligogalacturonate lyas 99.8 5.3E-17 1.8E-21 149.7 23.6 292 40-376 21-382 (388)
164 1z68_A Fibroblast activation p 99.8 2.5E-18 8.5E-23 171.8 15.3 286 56-376 20-391 (719)
165 4a5s_A Dipeptidyl peptidase 4 99.8 8.3E-17 2.8E-21 161.0 24.1 243 15-337 28-358 (740)
166 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-15 3.6E-20 137.6 27.9 208 163-376 91-322 (329)
167 4a5s_A Dipeptidyl peptidase 4 99.7 1.5E-16 5.3E-21 159.0 21.2 195 166-376 65-353 (740)
168 1q7f_A NHL, brain tumor CG1071 99.7 1.3E-14 4.3E-19 127.8 29.3 227 125-376 43-280 (286)
169 1q7f_A NHL, brain tumor CG1071 99.7 2E-14 7E-19 126.5 30.6 245 54-334 32-282 (286)
170 3azo_A Aminopeptidase; POP fam 99.7 3.7E-15 1.3E-19 147.3 28.1 194 163-374 130-365 (662)
171 3dsm_A Uncharacterized protein 99.7 9.6E-14 3.3E-18 124.7 31.7 269 21-341 14-310 (328)
172 3c5m_A Oligogalacturonate lyas 99.7 8.8E-16 3E-20 141.8 18.4 268 62-375 44-381 (396)
173 2oiz_A Aromatic amine dehydrog 99.7 3.3E-14 1.1E-18 129.4 26.1 269 63-377 13-335 (361)
174 3pe7_A Oligogalacturonate lyas 99.7 1.6E-14 5.5E-19 133.0 24.4 202 163-377 81-330 (388)
175 3fvz_A Peptidyl-glycine alpha- 99.7 4E-14 1.4E-18 127.3 25.9 202 163-376 24-277 (329)
176 3dsm_A Uncharacterized protein 99.7 5.8E-14 2E-18 126.1 26.8 269 72-376 14-302 (328)
177 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-12 5.3E-17 124.5 36.1 316 15-378 168-540 (567)
178 3no2_A Uncharacterized protein 99.6 5.7E-13 2E-17 116.2 29.3 241 12-339 3-259 (276)
179 2z2n_A Virginiamycin B lyase; 99.6 1.7E-11 6E-16 108.1 38.3 276 54-375 17-294 (299)
180 1qks_A Cytochrome CD1 nitrite 99.6 1.8E-12 6.1E-17 124.1 33.7 290 16-339 210-545 (567)
181 2dg1_A DRP35, lactonase; beta 99.6 7.5E-13 2.6E-17 119.2 28.2 257 62-360 14-293 (333)
182 2xdw_A Prolyl endopeptidase; a 99.6 2.9E-13 9.9E-18 134.7 27.7 198 166-376 174-414 (710)
183 3no2_A Uncharacterized protein 99.6 3.2E-13 1.1E-17 117.8 23.5 214 123-364 5-230 (276)
184 3azo_A Aminopeptidase; POP fam 99.6 8.2E-14 2.8E-18 137.7 22.0 196 167-375 81-322 (662)
185 2gop_A Trilobed protease; beta 99.6 7.4E-13 2.5E-17 119.9 26.0 242 74-375 42-330 (347)
186 3c5m_A Oligogalacturonate lyas 99.6 1.1E-12 3.7E-17 120.9 27.1 273 24-336 60-388 (396)
187 3e5z_A Putative gluconolactona 99.6 1.4E-12 4.7E-17 115.4 26.6 220 125-374 42-284 (296)
188 1rwi_B Serine/threonine-protei 99.6 7.8E-13 2.7E-17 115.2 24.7 223 130-378 43-266 (270)
189 2dg1_A DRP35, lactonase; beta 99.6 5.7E-12 2E-16 113.3 30.1 255 17-323 20-301 (333)
190 3e5z_A Putative gluconolactona 99.6 4.3E-12 1.5E-16 112.2 26.5 228 17-337 43-291 (296)
191 1rwi_B Serine/threonine-protei 99.5 3.1E-12 1.1E-16 111.3 25.0 241 54-335 26-267 (270)
192 3sjl_D Methylamine dehydrogena 99.5 4.8E-11 1.6E-15 107.4 31.8 293 15-348 45-379 (386)
193 2qc5_A Streptogramin B lactona 99.5 3.2E-10 1.1E-14 100.0 37.1 273 54-373 22-297 (300)
194 1kb0_A Quinohemoprotein alcoho 99.5 1.3E-11 4.3E-16 121.4 30.1 307 14-360 77-533 (677)
195 1yiq_A Quinohemoprotein alcoho 99.5 1.9E-11 6.4E-16 120.5 30.9 307 14-360 70-531 (689)
196 2z2n_A Virginiamycin B lyase; 99.5 3.5E-10 1.2E-14 99.7 35.2 269 13-334 24-297 (299)
197 2bkl_A Prolyl endopeptidase; m 99.5 4.6E-12 1.6E-16 125.7 24.0 193 166-376 171-397 (695)
198 2mad_H Methylamine dehydrogena 99.5 2.4E-10 8.4E-15 103.9 32.5 270 62-378 29-352 (373)
199 2bkl_A Prolyl endopeptidase; m 99.5 1.7E-11 5.8E-16 121.7 26.8 242 54-335 123-400 (695)
200 3q7m_A Lipoprotein YFGL, BAMB; 99.5 8.8E-11 3E-15 107.5 29.7 307 14-373 53-375 (376)
201 2mad_H Methylamine dehydrogena 99.5 1.2E-09 4.2E-14 99.3 36.8 282 15-339 33-357 (373)
202 2gop_A Trilobed protease; beta 99.5 2.1E-11 7.3E-16 110.2 24.8 241 23-334 42-332 (347)
203 2xdw_A Prolyl endopeptidase; a 99.5 3.2E-12 1.1E-16 127.2 21.0 196 164-374 126-366 (710)
204 1xip_A Nucleoporin NUP159; bet 99.5 1.6E-12 5.3E-17 117.5 16.3 180 163-360 38-227 (388)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 9.8E-11 3.4E-15 104.2 26.9 198 163-376 71-299 (314)
206 3sjl_D Methylamine dehydrogena 99.4 1E-10 3.6E-15 105.2 26.4 272 62-378 41-365 (386)
207 3g4e_A Regucalcin; six bladed 99.4 5.4E-10 1.8E-14 98.7 29.8 211 125-360 27-255 (297)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-10 4.1E-15 103.6 25.7 239 56-332 22-299 (314)
209 2qc5_A Streptogramin B lactona 99.4 4.1E-09 1.4E-13 92.8 34.8 266 15-331 31-299 (300)
210 1yr2_A Prolyl oligopeptidase; 99.4 8.5E-11 2.9E-15 117.5 26.3 196 166-376 212-441 (741)
211 3c75_H MADH, methylamine dehyd 99.4 6.5E-10 2.2E-14 101.8 29.5 275 24-339 99-409 (426)
212 1yr2_A Prolyl oligopeptidase; 99.4 1.7E-10 5.8E-15 115.3 26.7 239 54-334 165-443 (741)
213 3hxj_A Pyrrolo-quinoline quino 99.4 2.2E-10 7.5E-15 102.7 23.0 295 13-376 29-324 (330)
214 1xip_A Nucleoporin NUP159; bet 99.3 2.7E-11 9.2E-16 109.4 16.8 168 124-319 50-231 (388)
215 3hrp_A Uncharacterized protein 99.3 2.3E-09 7.7E-14 99.0 27.7 224 125-373 144-407 (409)
216 3c75_H MADH, methylamine dehyd 99.3 5.1E-10 1.8E-14 102.5 22.9 273 62-379 81-405 (426)
217 2ghs_A AGR_C_1268P; regucalcin 99.3 9.3E-09 3.2E-13 92.0 30.5 207 125-360 63-285 (326)
218 1fwx_A Nitrous oxide reductase 99.3 1.5E-09 5E-14 101.9 24.7 265 68-360 18-401 (595)
219 3hrp_A Uncharacterized protein 99.3 6.7E-09 2.3E-13 95.8 29.0 239 54-330 133-408 (409)
220 3dr2_A Exported gluconolactona 99.3 3.8E-09 1.3E-13 93.5 26.0 207 125-360 59-290 (305)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.2 6.2E-09 2.1E-13 95.2 26.9 260 14-329 103-375 (376)
222 1kv9_A Type II quinohemoprotei 99.2 1.1E-08 3.7E-13 100.5 29.9 300 15-342 67-498 (668)
223 2ad6_A Methanol dehydrogenase 99.2 5.5E-09 1.9E-13 100.5 26.9 186 167-360 239-520 (571)
224 2hz6_A Endoplasmic reticulum t 99.2 2E-12 6.8E-17 117.9 2.3 181 173-378 8-194 (369)
225 3iuj_A Prolyl endopeptidase; h 99.2 2.2E-09 7.4E-14 106.4 24.1 178 184-376 208-405 (693)
226 1yiq_A Quinohemoprotein alcoho 99.2 4.7E-09 1.6E-13 103.4 26.0 286 66-378 71-507 (689)
227 2hz6_A Endoplasmic reticulum t 99.2 6E-12 2.1E-16 114.7 4.9 203 124-358 10-215 (369)
228 2iwa_A Glutamine cyclotransfer 99.2 6E-09 2E-13 88.8 22.5 207 154-376 12-237 (266)
229 1kb0_A Quinohemoprotein alcoho 99.2 4.3E-09 1.5E-13 103.5 23.7 280 67-378 79-509 (677)
230 3g4e_A Regucalcin; six bladed 99.2 9.6E-09 3.3E-13 90.6 23.7 217 62-320 21-260 (297)
231 1w6s_A Methanol dehydrogenase 99.2 2.4E-08 8.2E-13 96.0 27.4 188 167-360 245-529 (599)
232 1mda_H Methylamine dehydrogena 99.2 1E-08 3.5E-13 92.3 23.1 266 25-340 47-354 (368)
233 2ghs_A AGR_C_1268P; regucalcin 99.1 5.6E-08 1.9E-12 86.9 27.4 215 62-321 57-291 (326)
234 2qe8_A Uncharacterized protein 99.1 5.6E-09 1.9E-13 94.1 20.6 205 162-375 66-320 (343)
235 3dr2_A Exported gluconolactona 99.1 7.2E-09 2.5E-13 91.8 20.5 192 163-376 45-267 (305)
236 3nol_A Glutamine cyclotransfer 99.1 2.2E-08 7.5E-13 84.2 20.3 190 153-360 33-238 (262)
237 1flg_A Protein (quinoprotein e 99.1 1.4E-07 4.8E-12 90.8 28.7 187 167-360 250-542 (582)
238 1fwx_A Nitrous oxide reductase 99.0 1.3E-07 4.3E-12 89.0 25.6 245 55-337 90-436 (595)
239 3iuj_A Prolyl endopeptidase; h 99.0 6.6E-09 2.3E-13 102.9 17.3 193 164-376 130-359 (693)
240 3mbr_X Glutamine cyclotransfer 99.0 3.2E-07 1.1E-11 76.5 23.7 190 154-360 12-217 (243)
241 2qe8_A Uncharacterized protein 99.0 3.5E-08 1.2E-12 88.9 19.0 205 163-374 17-276 (343)
242 2ece_A 462AA long hypothetical 99.0 3.3E-07 1.1E-11 83.2 25.0 226 125-364 98-399 (462)
243 3hxj_A Pyrrolo-quinoline quino 99.0 2.2E-08 7.5E-13 89.5 17.2 177 174-375 107-283 (330)
244 1mda_H Methylamine dehydrogena 99.0 4.3E-08 1.5E-12 88.3 18.8 210 153-378 58-348 (368)
245 3nok_A Glutaminyl cyclase; bet 99.0 2.7E-07 9.1E-12 77.6 21.5 189 154-360 46-248 (268)
246 1npe_A Nidogen, entactin; glyc 98.9 8.6E-06 2.9E-10 70.2 31.5 207 125-359 50-263 (267)
247 2ece_A 462AA long hypothetical 98.9 7.5E-07 2.6E-11 80.9 25.1 197 172-375 93-351 (462)
248 1kv9_A Type II quinohemoprotei 98.9 3.7E-07 1.3E-11 89.6 24.9 286 66-378 67-490 (668)
249 4a2l_A BT_4663, two-component 98.8 0.00021 7E-09 72.0 39.3 313 14-374 273-612 (795)
250 4a2l_A BT_4663, two-component 98.8 0.00017 5.8E-09 72.6 38.2 319 15-375 226-570 (795)
251 2ad6_A Methanol dehydrogenase 98.7 3.7E-06 1.3E-10 80.9 24.9 279 67-378 64-496 (571)
252 2iwa_A Glutamine cyclotransfer 98.7 7.3E-06 2.5E-10 69.8 23.7 143 176-333 77-238 (266)
253 3nol_A Glutamine cyclotransfer 98.7 1.1E-05 3.8E-10 67.9 22.8 124 182-321 105-244 (262)
254 2fp8_A Strictosidine synthase; 98.6 2.1E-05 7.1E-10 69.9 25.0 200 164-376 81-313 (322)
255 3qqz_A Putative uncharacterize 98.6 2.7E-05 9.3E-10 65.8 23.2 200 163-374 27-251 (255)
256 1w6s_A Methanol dehydrogenase 98.6 1.8E-05 6E-10 76.2 24.8 286 67-379 64-506 (599)
257 1npe_A Nidogen, entactin; glyc 98.6 7.3E-05 2.5E-09 64.3 26.3 195 163-376 36-238 (267)
258 1flg_A Protein (quinoprotein e 98.6 2.8E-05 9.4E-10 74.9 25.4 284 67-379 70-519 (582)
259 3mbr_X Glutamine cyclotransfer 98.5 0.00022 7.4E-09 59.5 25.9 126 180-321 81-223 (243)
260 3v9f_A Two-component system se 98.5 0.00082 2.8E-08 67.5 35.4 318 15-376 222-568 (781)
261 3v9f_A Two-component system se 98.4 0.0014 4.7E-08 65.8 34.6 319 14-374 268-609 (781)
262 2xe4_A Oligopeptidase B; hydro 98.4 2E-05 6.7E-10 78.7 20.7 195 164-372 175-394 (751)
263 2fp8_A Strictosidine synthase; 98.4 3.4E-05 1.2E-09 68.5 20.3 201 164-375 20-268 (322)
264 3nok_A Glutaminyl cyclase; bet 98.4 0.00027 9.3E-09 59.5 23.6 170 125-320 67-253 (268)
265 2p4o_A Hypothetical protein; p 98.4 0.00026 9E-09 62.2 24.8 195 162-376 31-242 (306)
266 1k3i_A Galactose oxidase precu 98.3 0.0001 3.5E-09 72.4 22.8 190 166-365 290-530 (656)
267 3amr_A 3-phytase; beta-propell 98.3 0.00018 6.1E-09 63.2 21.1 188 173-375 39-262 (355)
268 3v65_B Low-density lipoprotein 98.3 0.0025 8.7E-08 57.9 30.2 233 67-339 89-325 (386)
269 3qqz_A Putative uncharacterize 98.2 0.0015 5.2E-08 55.1 25.8 171 153-330 60-251 (255)
270 4hw6_A Hypothetical protein, I 98.2 0.00035 1.2E-08 64.6 23.0 198 164-375 140-373 (433)
271 3ei3_A DNA damage-binding prot 98.2 0.0046 1.6E-07 64.2 32.5 230 125-377 708-1000(1158)
272 3v64_C Agrin; beta propeller, 98.2 0.0026 9E-08 56.9 27.1 197 162-374 72-273 (349)
273 3v65_B Low-density lipoprotein 98.1 0.0045 1.5E-07 56.3 28.0 197 162-374 115-316 (386)
274 3tc9_A Hypothetical hydrolase; 98.1 0.00032 1.1E-08 64.8 20.4 155 164-331 138-300 (430)
275 1ijq_A LDL receptor, low-densi 98.1 0.0042 1.4E-07 54.7 31.1 198 162-375 29-237 (316)
276 2xzh_A Clathrin heavy chain 1; 98.1 0.0039 1.3E-07 53.8 29.2 236 62-335 75-335 (365)
277 3ei3_A DNA damage-binding prot 98.1 0.016 5.3E-07 60.3 36.4 325 11-377 520-914 (1158)
278 3p5b_L Low density lipoprotein 98.1 0.007 2.4E-07 55.3 31.2 200 161-375 110-319 (400)
279 3v64_C Agrin; beta propeller, 98.0 0.0064 2.2E-07 54.4 30.5 162 163-339 116-282 (349)
280 2p4o_A Hypothetical protein; p 98.0 0.0061 2.1E-07 53.4 28.3 234 55-323 35-279 (306)
281 3amr_A 3-phytase; beta-propell 98.0 0.0054 1.9E-07 53.9 24.2 204 63-297 38-272 (355)
282 3sov_A LRP-6, low-density lipo 98.0 0.0072 2.5E-07 53.2 25.8 197 163-376 35-238 (318)
283 4hw6_A Hypothetical protein, I 97.9 0.0036 1.2E-07 57.8 22.7 197 162-373 181-430 (433)
284 2xe4_A Oligopeptidase B; hydro 97.9 0.0002 6.9E-09 71.4 15.2 114 215-333 175-305 (751)
285 3tc9_A Hypothetical hydrolase; 97.9 0.00032 1.1E-08 64.9 15.3 153 215-376 138-301 (430)
286 1bpo_A Protein (clathrin); cla 97.8 0.015 5.3E-07 52.3 29.1 236 62-335 74-334 (494)
287 1ijq_A LDL receptor, low-densi 97.8 0.018 6E-07 50.7 32.3 236 67-339 3-245 (316)
288 3m0c_C LDL receptor, low-densi 97.7 0.02 6.8E-07 57.0 26.3 198 162-373 423-629 (791)
289 1n7d_A LDL receptor, low-densi 97.7 0.00027 9.2E-09 69.6 12.5 198 163-375 406-613 (699)
290 2p9w_A MAL S 1 allergenic prot 97.7 0.0054 1.9E-07 53.4 18.2 162 164-332 14-215 (334)
291 1k3i_A Galactose oxidase precu 97.6 0.0023 8E-08 62.7 18.0 188 167-366 247-476 (656)
292 2xbg_A YCF48-like protein; pho 97.6 0.019 6.4E-07 50.8 21.4 195 164-374 123-320 (327)
293 2xzh_A Clathrin heavy chain 1; 97.6 0.031 1.1E-06 48.4 29.5 191 167-376 71-332 (365)
294 3p5b_L Low density lipoprotein 97.5 0.051 1.7E-06 49.5 34.3 238 67-339 85-327 (400)
295 3sov_A LRP-6, low-density lipo 97.5 0.041 1.4E-06 48.3 28.8 163 163-339 79-245 (318)
296 1bpo_A Protein (clathrin); cla 97.4 0.074 2.5E-06 48.0 27.9 191 167-376 70-331 (494)
297 2be1_A Serine/threonine-protei 97.4 0.00069 2.4E-08 59.7 9.0 151 174-334 10-185 (339)
298 2p9w_A MAL S 1 allergenic prot 97.4 0.012 3.9E-07 51.4 16.5 158 215-375 14-214 (334)
299 3sre_A PON1, serum paraoxonase 97.3 0.055 1.9E-06 48.1 21.0 201 165-373 52-295 (355)
300 1n7d_A LDL receptor, low-densi 97.3 0.002 6.9E-08 63.4 12.7 162 165-339 455-621 (699)
301 3kya_A Putative phosphatase; s 97.3 0.11 3.6E-06 48.4 25.7 163 164-337 248-480 (496)
302 3pbp_A Nucleoporin NUP82; beta 97.3 0.081 2.8E-06 47.7 21.0 147 172-328 30-208 (452)
303 3kya_A Putative phosphatase; s 97.2 0.0091 3.1E-07 55.5 15.4 155 215-376 140-341 (496)
304 4a0p_A LRP6, LRP-6, low-densit 97.2 0.17 5.8E-06 49.0 31.4 220 130-375 12-236 (628)
305 1xi4_A Clathrin heavy chain; a 97.2 0.058 2E-06 56.1 21.4 235 62-334 74-333 (1630)
306 2xbg_A YCF48-like protein; pho 97.0 0.15 5.1E-06 44.9 21.6 191 163-370 80-273 (327)
307 3sre_A PON1, serum paraoxonase 97.0 0.045 1.5E-06 48.6 17.1 152 217-376 53-252 (355)
308 3m0c_C LDL receptor, low-densi 97.0 0.32 1.1E-05 48.4 32.9 164 163-339 471-639 (791)
309 3pbp_A Nucleoporin NUP82; beta 96.8 0.071 2.4E-06 48.0 16.0 128 153-285 53-208 (452)
310 2vpj_A Kelch-like protein 12; 96.6 0.16 5.4E-06 44.0 17.2 146 173-336 62-235 (301)
311 2be1_A Serine/threonine-protei 96.5 0.11 3.8E-06 45.7 15.4 202 66-294 11-236 (339)
312 3a9g_A Putative uncharacterize 96.4 0.055 1.9E-06 48.3 13.3 140 214-360 29-211 (354)
313 2xn4_A Kelch-like protein 2; s 96.3 0.22 7.6E-06 43.1 16.6 146 173-336 61-233 (302)
314 3s94_A LRP-6, low-density lipo 96.3 0.84 2.9E-05 44.1 29.5 162 163-338 84-249 (619)
315 2ism_A Putative oxidoreductase 96.2 0.11 3.9E-06 46.2 14.4 102 214-320 31-153 (352)
316 1cru_A Protein (soluble quinop 96.2 0.4 1.4E-05 44.4 18.3 106 214-321 27-163 (454)
317 2ism_A Putative oxidoreductase 96.2 0.63 2.1E-05 41.4 26.5 60 259-320 268-333 (352)
318 3s94_A LRP-6, low-density lipo 96.1 1.1 3.7E-05 43.3 30.2 197 163-375 349-550 (619)
319 3ii7_A Kelch-like protein 7; p 96.1 0.33 1.1E-05 42.1 16.5 145 173-335 55-228 (306)
320 1xi4_A Clathrin heavy chain; a 96.1 0.26 9E-06 51.5 17.3 107 167-288 70-187 (1630)
321 2vpj_A Kelch-like protein 12; 96.1 0.47 1.6E-05 40.9 17.3 185 173-376 14-231 (301)
322 3ii7_A Kelch-like protein 7; p 95.8 0.8 2.7E-05 39.6 17.6 144 175-336 13-182 (306)
323 1tl2_A L10, protein (tachylect 95.6 0.74 2.5E-05 37.5 16.4 143 164-325 42-203 (236)
324 3das_A Putative oxidoreductase 95.6 1.2 3.9E-05 39.4 17.5 149 163-318 32-218 (347)
325 3a9g_A Putative uncharacterize 95.6 1.2 4.1E-05 39.6 28.4 61 259-320 259-330 (354)
326 4a0p_A LRP6, LRP-6, low-densit 95.4 2 6.9E-05 41.5 32.4 232 67-338 8-243 (628)
327 1tl2_A L10, protein (tachylect 95.4 0.084 2.9E-06 42.9 8.8 112 259-375 41-162 (236)
328 2xn4_A Kelch-like protein 2; s 95.3 0.42 1.4E-05 41.3 14.1 145 173-335 108-279 (302)
329 3sbq_A Nitrous-oxide reductase 95.3 1.9 6.7E-05 40.3 25.9 92 239-333 300-409 (638)
330 1zgk_A Kelch-like ECH-associat 95.3 0.52 1.8E-05 40.8 14.5 104 226-336 121-244 (308)
331 3ott_A Two-component system se 95.2 2.8 9.7E-05 41.5 24.9 188 163-375 63-259 (758)
332 2g8s_A Glucose/sorbosone dehyd 95.0 1.8 6E-05 38.4 27.5 61 259-319 271-340 (353)
333 1zgk_A Kelch-like ECH-associat 95.0 1.2 4.1E-05 38.5 15.9 183 173-376 24-240 (308)
334 2g8s_A Glucose/sorbosone dehyd 94.9 1.1 3.9E-05 39.7 15.7 149 163-318 18-214 (353)
335 4asc_A Kelch repeat and BTB do 94.8 0.91 3.1E-05 39.4 14.9 105 226-336 98-225 (315)
336 2woz_A Kelch repeat and BTB do 94.5 2.2 7.5E-05 37.0 17.2 105 226-336 109-235 (318)
337 3s25_A Hypothetical 7-bladed b 94.4 2.3 7.7E-05 36.8 17.0 139 169-334 59-218 (302)
338 4asc_A Kelch repeat and BTB do 94.1 1 3.5E-05 39.1 13.5 145 173-335 98-280 (315)
339 3ott_A Two-component system se 93.9 5.6 0.00019 39.4 33.4 200 163-375 324-544 (758)
340 2woz_A Kelch repeat and BTB do 92.7 1.6 5.5E-05 37.9 12.4 146 173-336 109-291 (318)
341 2uvk_A YJHT; unknown function, 92.5 1.9 6.6E-05 38.1 12.9 61 281-344 286-354 (357)
342 2uvk_A YJHT; unknown function, 92.4 3.2 0.00011 36.6 14.1 144 173-330 19-224 (357)
343 3s25_A Hypothetical 7-bladed b 91.3 6.6 0.00023 33.8 15.7 101 224-336 61-180 (302)
344 3das_A Putative oxidoreductase 91.2 7.4 0.00025 34.3 29.5 242 55-320 35-326 (347)
345 2zwa_A Leucine carboxyl methyl 90.6 14 0.00047 36.2 18.2 155 172-334 396-579 (695)
346 3sbq_A Nitrous-oxide reductase 89.9 13 0.00045 35.0 28.0 102 214-320 323-453 (638)
347 2zwa_A Leucine carboxyl methyl 89.2 4.8 0.00016 39.5 12.9 151 173-336 451-639 (695)
348 1cru_A Protein (soluble quinop 89.0 14 0.00047 34.0 27.6 120 54-182 29-163 (454)
349 2wg3_C Hedgehog-interacting pr 87.6 16 0.00053 33.7 14.5 106 215-322 15-159 (463)
350 1zi0_A DNA gyrase subunit A; b 87.3 13 0.00046 31.9 24.8 212 63-288 1-225 (307)
351 3qhy_B Beta-lactamase inhibito 83.7 19 0.00066 30.5 12.9 184 164-377 64-247 (282)
352 1suu_A DNA gyrase subunit A; t 82.7 23 0.00077 30.6 25.6 213 63-289 6-231 (312)
353 4gq2_M Nucleoporin NUP120; bet 82.6 12 0.00043 38.1 12.3 40 302-341 236-275 (950)
354 3zwu_A Alkaline phosphatase PH 82.0 5.1 0.00017 38.1 8.6 59 261-319 478-548 (592)
355 3qhy_B Beta-lactamase inhibito 81.3 24 0.00081 29.9 14.2 183 164-376 25-207 (282)
356 1wp5_A Topoisomerase IV; broke 79.2 31 0.0011 29.9 23.8 210 63-289 3-225 (323)
357 3uc1_A DNA gyrase subunit A; D 79.2 31 0.0011 30.0 23.0 175 103-288 94-278 (327)
358 4fhn_B Nucleoporin NUP120; pro 78.3 69 0.0024 33.4 16.7 37 261-297 240-276 (1139)
359 4gq2_M Nucleoporin NUP120; bet 77.9 64 0.0022 32.9 22.7 38 260-297 237-274 (950)
360 4a9v_A PHOX; hydrolase, beta-p 75.2 16 0.00055 34.5 9.5 60 260-319 477-548 (592)
361 3l6v_A GYRA, DNA gyrase subuni 74.6 46 0.0016 29.5 25.2 163 63-245 5-179 (370)
362 4fhn_B Nucleoporin NUP120; pro 73.9 14 0.00047 38.7 9.8 39 303-341 239-277 (1139)
363 3no0_A DNA gyrase subunit A; D 73.0 41 0.0014 28.3 21.7 205 103-331 23-245 (276)
364 1zi0_A DNA gyrase subunit A; b 69.8 53 0.0018 28.2 22.8 197 124-331 4-225 (307)
365 1suu_A DNA gyrase subunit A; t 69.5 54 0.0018 28.2 24.7 204 124-332 9-231 (312)
366 3q6k_A 43.2 kDa salivary prote 66.7 70 0.0024 28.4 16.4 137 238-376 124-306 (381)
367 3zwu_A Alkaline phosphatase PH 63.5 17 0.00057 34.6 7.1 56 304-361 478-545 (592)
368 3q6k_A 43.2 kDa salivary prote 59.6 95 0.0033 27.6 20.7 169 185-360 124-337 (381)
369 3f7f_A Nucleoporin NUP120; nuc 59.3 15 0.00053 35.6 6.1 37 303-341 223-259 (729)
370 3f7f_A Nucleoporin NUP120; nuc 58.5 18 0.00063 35.1 6.5 37 260-298 223-259 (729)
371 1wp5_A Topoisomerase IV; broke 56.6 97 0.0033 26.7 24.6 215 16-246 7-225 (323)
372 4a9v_A PHOX; hydrolase, beta-p 54.4 39 0.0013 31.9 7.7 57 302-360 476-544 (592)
373 3kci_A Probable E3 ubiquitin-p 49.9 1.4E+02 0.0047 26.5 25.7 245 125-376 64-345 (389)
374 3uc1_A DNA gyrase subunit A; D 48.4 1.3E+02 0.0046 25.9 24.4 208 66-288 4-227 (327)
375 2wg3_C Hedgehog-interacting pr 39.5 2.2E+02 0.0077 26.0 31.0 70 250-320 266-354 (463)
376 3al9_A Plexin-A2; beta-propell 33.0 1.5E+02 0.005 27.9 8.2 68 260-327 401-476 (539)
377 3mez_B Mannose-specific lectin 32.7 1.3E+02 0.0043 21.1 7.9 26 305-332 59-84 (113)
378 1q47_A Semaphorin 3A; beta pro 31.8 2.5E+02 0.0084 26.0 9.4 68 260-327 405-487 (495)
379 4hvt_A Ritya.17583.B, post-pro 29.6 4E+02 0.014 25.9 23.7 96 235-331 318-429 (711)
380 4hvt_A Ritya.17583.B, post-pro 28.0 4.3E+02 0.015 25.8 17.7 198 167-373 133-378 (711)
381 3b7f_A Glycosyl hydrolase, BNR 27.9 3.1E+02 0.01 24.0 17.6 68 260-327 116-203 (394)
382 3b7f_A Glycosyl hydrolase, BNR 27.7 3.1E+02 0.011 24.0 12.3 100 227-328 22-143 (394)
383 1ic9_A TH10AOX; three stranded 27.0 21 0.0007 17.1 0.6 12 5-16 10-21 (29)
384 3a0c_A Mannose/sialic acid-bin 27.0 1.6E+02 0.0054 20.4 10.1 43 219-274 55-97 (110)
385 1zvt_A Topoisomerase IV subuni 26.5 2.7E+02 0.0093 22.9 15.3 150 67-246 4-163 (256)
386 1vc3_B L-aspartate-alpha-decar 26.3 76 0.0026 21.6 3.5 29 323-351 18-46 (96)
387 3oug_A Aspartate 1-decarboxyla 25.9 98 0.0034 21.7 4.1 51 301-351 15-73 (114)
388 1b2p_A Protein (lectin); manno 25.0 1.8E+02 0.0063 20.5 11.0 40 224-274 68-107 (119)
389 1q47_A Semaphorin 3A; beta pro 24.9 2.4E+02 0.0082 26.1 8.0 57 228-284 422-487 (495)
390 3hx6_A Type 4 fimbrial biogene 24.9 4.4E+02 0.015 24.8 15.2 159 173-334 84-286 (570)
391 3l6v_A GYRA, DNA gyrase subuni 23.7 3.8E+02 0.013 23.6 27.2 164 16-193 9-180 (370)
392 3al9_A Plexin-A2; beta-propell 23.3 1.7E+02 0.0059 27.4 6.8 69 216-284 402-476 (539)
393 3plx_B Aspartate 1-decarboxyla 21.8 99 0.0034 21.3 3.5 28 323-351 18-45 (102)
394 1pqh_A Aspartate 1-decarboxyla 21.1 1.2E+02 0.0041 22.3 3.9 28 323-350 59-86 (143)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-44 Score=323.15 Aligned_cols=295 Identities=14% Similarity=0.239 Sum_probs=249.2
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc--eeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
.+...+.+|.+.|..++++.+..+++.+|++|+.|++|+||++.+++... .+. ++...+.++.+.+..
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~--------gh~~~v~~~~~~~~~-- 92 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE--------GHQLGVVSVDISHTL-- 92 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC--------CCSSCEEEEEECSSS--
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec--------cCCCCEEEEEECCCC--
Confidence 44566788999988888877666678899999999999999987665322 233 345578877776543
Q ss_pred cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI 197 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 197 (430)
..+++++.|+.+++|++.... .+..+. .+...+.+++|+|++++|++++.++.|++|++++++..
T Consensus 93 ------~~l~s~s~D~~i~lWd~~~~~--------~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~ 157 (321)
T 3ow8_A 93 ------PIAASSSLDAHIRLWDLENGK--------QIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157 (321)
T ss_dssp ------SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred ------CEEEEEeCCCcEEEEECCCCC--------EEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee
Confidence 488999999999999975332 444444 45667889999999999999999999999999999888
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
..+..+. ..|.+++| +|++++|++|+.|+.|++||+++++ ++..+.+|..+|.+++|+|++++|++|+
T Consensus 158 ~~~~~~~---------~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 158 YSLDTRG---------KFILSIAY--SPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp EEEECSS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred EEecCCC---------ceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 7776654 66999999 8999999999999999999999865 5888999999999999999999999999
Q ss_pred CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
.|+.|++||+++++.+..+.+| ...|.+++|+|++.+|++++.|+.|+|||+.+++++.. +.+| ...|++++|+|+
T Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~h-~~~v~~v~~s~~ 301 (321)
T 3ow8_A 226 DDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT--FFDH-QDQVWGVKYNGN 301 (321)
T ss_dssp TTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCC-SSCEEEEEECTT
T ss_pred CCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE--EcCC-CCcEEEEEECCC
Confidence 9999999999999999999998 89999999999999999999999999999999999988 5567 455799999999
Q ss_pred ccc-cccCCCCceEecCCC
Q 014154 358 EVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 358 g~~-~~~~~d~~i~~~~~~ 375 (430)
+.+ ++++.|+.|++|+.+
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 988 999999999999965
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-43 Score=346.59 Aligned_cols=340 Identities=12% Similarity=0.123 Sum_probs=266.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.++++|+.|++|++||...+ ++...+.+|...|..+ .| +|+|++||+|+.|++|+|||+.+++.+..+..
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~H~~~V~~v--~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~- 230 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSV--RY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFED- 230 (611)
T ss_dssp CEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEE--EE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBC-
T ss_pred eEEEEEeCCCeEEEEECCCC-----eEeeeeccccCceEEE--EE--CCCCCEEEEEECCCcEEEEECCCCcEeeeecc-
Confidence 36999999999999998876 7788899999985544 44 67889999999999999999998887766531
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc------------------------cccCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS 150 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~------------------------~~~~~ 150 (430)
......+|.+.+.++.+.+.. ..+++++.|+++++|++..... ++++.
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg--------~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDG--------TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred ccccccccCCCEEEEEECCCC--------CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 001112466788888876644 4899999999999999753211 34556
Q ss_pred CcceEEeee----------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC-CCCCCC------------
Q 014154 151 CSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNS------------ 207 (430)
Q Consensus 151 ~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~------------ 207 (430)
++.+++|+. .|...|.+++|+|++++|++++.|++|++||+.++.....+. .|....
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 788888874 356789999999999999999999999999998776543321 110000
Q ss_pred ------------------------------------------------------------CCCcCCcceeEEEEeecCCC
Q 014154 208 ------------------------------------------------------------LGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 208 ------------------------------------------------------------~~~~~~~~v~~~~~~~~~~~ 227 (430)
..+.+...+.+++| +|++
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~--spdg 460 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL--SNDK 460 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE--CTTS
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE--eCCC
Confidence 00011234678899 8999
Q ss_pred CEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEee--eeCCCCCCe
Q 014154 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGC--FIGKCSGSI 304 (430)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~--~~~~~~~~v 304 (430)
++|++|+.|+.|++||+...........+|...|++++|+|++++|++++.|+.|++||+.+ ++++.. +.+| ...|
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-~~~V 539 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKV 539 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCE
T ss_pred CEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-ccce
Confidence 99999999999999999864321122367999999999999999999999999999999987 666554 2336 8999
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
.+++|+|++++|++|+.|++|+|||+.++.......+.+|....|.+++|+|++++++++.|++|++|+.+
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEecc
Confidence 99999999999999999999999999887633211156774456799999999999999999999999873
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-43 Score=328.05 Aligned_cols=288 Identities=13% Similarity=0.213 Sum_probs=250.8
Q ss_pred eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
...+.+|...|.++ .| +|++++|++|+.||+|+|||+.+++....+.+| .+.+.++.+.+..
T Consensus 101 ~~~l~gh~~~V~~~--~~--~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h--------~~~V~~v~~~~~~------ 162 (410)
T 1vyh_C 101 KYALSGHRSPVTRV--IF--HPVFSVMVSASEDATIKVWDYETGDFERTLKGH--------TDSVQDISFDHSG------ 162 (410)
T ss_dssp SCEEECCSSCEEEE--EE--CSSSSEEEEEESSSCEEEEETTTCCCCEEECCC--------SSCEEEEEECTTS------
T ss_pred eEeecccCCcEEEE--EE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc--------CCcEEEEEEcCCC------
Confidence 34566788885554 44 778889999999999999999999988887654 4578888776543
Q ss_pred cCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC
Q 014154 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 122 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 201 (430)
..+++++.|+.+++|++.... .++.+. .|...|.+++|+|++++|++|+.|++|++||+.++..+..+.
T Consensus 163 --~~l~sgs~D~~i~iwd~~~~~--------~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 163 --KLLASCSADMTIKLWDFQGFE--------CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp --SEEEEEETTSCCCEEETTSSC--------EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CEEEEEeCCCeEEEEeCCCCc--------eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 489999999999999975322 333333 577899999999999999999999999999999999988887
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC------------
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD------------ 269 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~------------ 269 (430)
.|. .+|.++.| +|++.+|++|+.|+.|++||+.++. ....+..|...|.+++|+|+
T Consensus 232 ~h~---------~~v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 299 (410)
T 1vyh_C 232 GHR---------EWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGS 299 (410)
T ss_dssp CCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred CCC---------ccEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence 765 77999999 8999999999999999999999865 47788899999999999996
Q ss_pred --------CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 270 --------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 270 --------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
+.+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++.+|++|+.|+.|++||+.+++++.. +
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~--~ 376 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT--L 376 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE--E
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE--E
Confidence 678999999999999999999999999998 89999999999999999999999999999999998887 5
Q ss_pred eccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 342 KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 342 ~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
.+| ...|++++|+|++.+ ++++.|+.|++|+.
T Consensus 377 ~~h-~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 377 NAH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECC-SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cCC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 677 556799999999998 99999999999985
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-41 Score=303.74 Aligned_cols=293 Identities=15% Similarity=0.164 Sum_probs=242.1
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
++..+|.+|...|.. +.| +|+|++|++|+.||+|+|||+.++..+..+..+ ...+..+.+.+..
T Consensus 4 ~~~~~~~~h~~~V~~--~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~--------~~~v~~~~~~~~~---- 67 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKG--IDF--HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT--------ETPVRAGKFIARK---- 67 (304)
T ss_dssp CCEEEEEEECSCEEE--EEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEEEEEEEGGG----
T ss_pred eeEEeecCCCCceEE--EEE--CCCCCEEEEEcCCCcEEEEECCCCceeEEeecc--------CCcEEEEEEeCCC----
Confidence 355678889888554 445 778999999999999999999999888777653 3467777776654
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeE
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIW 198 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~ 198 (430)
..+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++|+.|++|++||++++ ....
T Consensus 68 ----~~l~s~s~d~~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 68 ----NWIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp ----TEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred ----CEEEEECCCCEEEEEECCCCc--------EEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence 489999999999999976432 455554 67899999999999999999999999999999876 4445
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC--CCCEEEE
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP--DSFNIYI 275 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp--~~~~l~~ 275 (430)
.+..|. ..|.+++| +| ++.+|++|+.|+.|++||++...........|...+..+.|+| ++.+|++
T Consensus 135 ~~~~h~---------~~v~~v~~--~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 135 TFEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp EECCCC---------SCEEEEEE--CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred hhcccC---------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence 566654 77999999 77 6789999999999999999886654444456678899999986 7789999
Q ss_pred EeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 276 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 355 (430)
|+.|+.|++||+++++++..+.+| ...|.+++|+|++++|++|+.||.|++||+.+++++.. +..+ ...+++++|+
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~~~~-~~~~~~~~~~ 279 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--LNVG-LERSWCIATH 279 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE--ECCS-SSSEEEEEEC
T ss_pred EcCCCeEEEEeCCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee--ccCC-CccEEEEEEC
Confidence 999999999999999999999998 89999999999999999999999999999999999988 5556 3457999999
Q ss_pred cccc--ccccCCCCceEecCCCC
Q 014154 356 DKEV--ANAAADAPMLEIQNGND 376 (430)
Q Consensus 356 ~~g~--~~~~~~d~~i~~~~~~~ 376 (430)
|++. +++++.++.+.+|+...
T Consensus 280 ~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 280 PTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp TTCGGGCEEEEETTEEEEEECC-
T ss_pred CCCCceEEEEecCCceEEEEecc
Confidence 9875 35556666677776543
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-41 Score=307.52 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=246.6
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+....+.+|...|.. +.| +|++++|++|+.||+|+|||+.+++.+..+..+ ...+.++.+.+..
T Consensus 46 ~~~~~l~gH~~~v~~--~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~--------~~~v~~~~~s~~~---- 109 (340)
T 1got_B 46 RTRRTLRGHLAKIYA--MHW--GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR--------SSWVMTCAYAPSG---- 109 (340)
T ss_dssp CEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECS--------SSCEEEEEECTTS----
T ss_pred hhheeecCCCCceEE--EEE--CCCCCEEEEEeCCCcEEEEECCCCCcceEeecC--------CccEEEEEECCCC----
Confidence 456778899998554 445 678899999999999999999998887776653 3467766665543
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
..+++++.++.+.+|++..... .....+.+ ..|...|.++.|++++ .+++++.|++|++||+.+++.+..
T Consensus 110 ----~~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~-~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 110 ----NYVACGGLDNICSIYNLKTREG----NVRVSREL-AGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp ----SEEEEEETTCEEEEEETTTCSB----SCEEEEEE-ECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred ----CEEEEEeCCCeEEEEECccCCC----cceeEEEe-cCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEE
Confidence 4899999999999999753321 00112222 3678899999999876 488999999999999999999988
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (430)
+..|. ..|.+++| +|++.+|++|+.|+.|++||++++. ++..+.+|...|.+++|+|++++|++|+.|
T Consensus 180 ~~~h~---------~~v~~~~~--~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 180 FTGHT---------GDVMSLSL--APDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EcCCC---------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 88765 67999999 8999999999999999999999865 578899999999999999999999999999
Q ss_pred CcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
+.|++||+++++.+..+..+ +...|.+++|+|++.+|++|+.|+.|++||+.+++.+.. +.+| ...|.+++|+|+|
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--~~~h-~~~v~~~~~s~dg 324 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGH-DNRVSCLGVTDDG 324 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECC-SSCEEEEEECTTS
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE--eecC-CCcEEEEEEcCCC
Confidence 99999999999887776532 135799999999999999999999999999999998887 6688 5567999999999
Q ss_pred cc-cccCCCCceEecC
Q 014154 359 VA-NAAADAPMLEIQN 373 (430)
Q Consensus 359 ~~-~~~~~d~~i~~~~ 373 (430)
.+ ++++.|+.|++|+
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 98 9999999999996
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-41 Score=308.84 Aligned_cols=298 Identities=12% Similarity=0.113 Sum_probs=248.6
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+....+.+|...|.++ .| +|++++|++|+.||+|+|||..+++....+..+ ...+.++.+.+..
T Consensus 55 ~~~~~l~gH~~~V~~~--~~--s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--------~~~v~~~~~sp~g---- 118 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCM--DW--CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP--------CTWVMACAYAPSG---- 118 (354)
T ss_dssp CEEEEEECCSSCEEEE--EE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--------SSCCCEEEECTTS----
T ss_pred EEEEEecCCCCeEEEE--EE--CCCCCEEEEEeCCCeEEEEECCCCCcceEEecC--------CCCEEEEEECCCC----
Confidence 4556788999995554 44 678899999999999999999888877666543 2356666665543
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
..+++++.++.+.+|.+....... .......+. .|...|.+++|+|++..|++++.|++|++||+++++.+..
T Consensus 119 ----~~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 119 ----CAIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191 (354)
T ss_dssp ----SEEEEESTTSEEEEEECCCCTTCC--SGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ----CEEEEeeCCCCEEEEEEecccccc--ccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Confidence 489999999999999987543210 011223333 5778999999999999999999999999999999999888
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (430)
+..|. ..|.+++|.+++++.+|++|+.|+.|++||+++++ ++..+..|...|.+++|+|++.+|++|+.|
T Consensus 192 ~~~h~---------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 192 FHGHG---------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp EECCS---------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EcCCC---------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 87765 67999999655578899999999999999999866 588899999999999999999999999999
Q ss_pred CcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
++|++||+++++.+..+..+ +...+.+++|+|++.+|++|+.|+.|++||+.+++.+.. +.+| ...|++++|+|+|
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--l~~h-~~~v~~l~~spdg 338 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI--LFGH-ENRVSTLRVSPDG 338 (354)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--ECCC-SSCEEEEEECTTS
T ss_pred CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE--EECC-CCcEEEEEECCCC
Confidence 99999999999887776643 134789999999999999999999999999999998877 6678 5567999999999
Q ss_pred cc-cccCCCCceEecC
Q 014154 359 VA-NAAADAPMLEIQN 373 (430)
Q Consensus 359 ~~-~~~~~d~~i~~~~ 373 (430)
.+ ++++.|+.|++|+
T Consensus 339 ~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEcCCCCEEecC
Confidence 98 9999999999995
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.1e-41 Score=329.02 Aligned_cols=312 Identities=18% Similarity=0.271 Sum_probs=263.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++++.||.|++|+... +.+..+.+|...+.. +.+ +|++++|++++.|+.|++||. +++.+..+.+
T Consensus 234 ~~l~~~~~d~~i~~w~~~~------~~~~~~~~~~~~v~~--v~~--~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~- 301 (577)
T 2ymu_A 234 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVNG--VAF--RPDGQTIASASDDKTVKLWNR-NGQLLQTLTG- 301 (577)
T ss_dssp SCEEEEETTSCEEEECTTS------CEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTSCEEEEET-TSCEEEEECC-
T ss_pred CEEEEEeCCCEEEEEeCCC------CEEEEEecCCCCEEE--EEE--cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEec-
Confidence 4688999999999999876 577788889888554 455 778899999999999999996 4565665554
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee------------------ecCc----cccCCCc
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE------------------VTKV----SAESSCS 152 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~------------------~~~~----~~~~~~~ 152 (430)
+...+.++.+.+.. ..+++++.++.+++|++. +.++ +++..++
T Consensus 302 -------h~~~v~~~~~~~~~--------~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 366 (577)
T 2ymu_A 302 -------HSSSVWGVAFSPDG--------QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366 (577)
T ss_dssp -------CSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -------CCCCeEEEEECCCC--------CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 34577777765543 478888999999998743 2222 4566788
Q ss_pred ceEEeeec---------CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee
Q 014154 153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 153 ~i~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+++|+.. |...|.+++|+|++++|++++.|+.|++||. +++.+..+..+. ..|.+++|
T Consensus 367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~-- 434 (577)
T 2ymu_A 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVWGVAF-- 434 (577)
T ss_dssp EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC---------CCeEEEEE--
Confidence 99999853 4577999999999999999999999999996 466666666654 67999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 303 (430)
+|++.+|++++.|+.|++||... + .+..+.+|...|.+++|+|++++|++++.|+.|++||. +++++..+.+| ...
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~ 510 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS 510 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred CCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCC
Confidence 89999999999999999999754 3 47888999999999999999999999999999999995 78889999998 899
Q ss_pred eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 304 v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
|++++|+|++++|++++.||.|+|||. +++++.. +.+| ...|++++|+|||++ ++++.|+.|++||
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~--~~~h-~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT--LTGH-SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE--EECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE--EcCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999996 6788877 6688 556799999999998 8999999999997
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.4e-41 Score=329.44 Aligned_cols=332 Identities=11% Similarity=0.075 Sum_probs=246.9
Q ss_pred CCc-ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc--c
Q 014154 13 PPL-RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--V 89 (430)
Q Consensus 13 ~~~-~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~--~ 89 (430)
|.. .+++++ ++.|++|++..+ +....+.+|...|.+++| +|+|++||+|+.||+|+|||+.+++.. .
T Consensus 28 pdg~~l~~~~-~~~v~l~~~~~~-----~~~~~~~~h~~~v~~~~~----spdg~~lasg~~d~~v~lWd~~~~~~~~~~ 97 (611)
T 1nr0_A 28 PAGDKIQYCN-GTSVYTVPVGSL-----TDTEIYTEHSHQTTVAKT----SPSGYYCASGDVHGNVRIWDTTQTTHILKT 97 (611)
T ss_dssp TTSSEEEEEE-TTEEEEEETTCS-----SCCEEECCCSSCEEEEEE----CTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred CCCCEEEeCC-CCEEEEecCCCc-----ccCeEecCCCCceEEEEE----CCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence 444 455554 679999999876 677788999998665554 678999999999999999999755432 2
Q ss_pred eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC---------------------CeeEEEEeeecCc---
Q 014154 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---------------------GKASMRSIEVTKV--- 145 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------g~~~v~~~~~~~~--- 145 (430)
.+.. +...+.++.|.+... .+++++.+ |.-.|+++.+.++
T Consensus 98 ~~~~--------~~~~v~~v~fs~dg~--------~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~ 161 (611)
T 1nr0_A 98 TIPV--------FSGPVKDISWDSESK--------RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 161 (611)
T ss_dssp EEEC--------SSSCEEEEEECTTSC--------EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred eecc--------cCCceEEEEECCCCC--------EEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCe
Confidence 3332 223555555443322 33333321 2233445555553
Q ss_pred --cccCCCcceEEeee----------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154 146 --SAESSCSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 146 --~~~~~~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
++++.|+.+++|+. .|...|.+++|+|++++|++++.|++|++||+.+++.+..+.... .....|.
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--~~~~~h~ 239 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--LKNVAHS 239 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--SSSCSSS
T ss_pred EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--ccccccC
Confidence 45667777777764 356789999999999999999999999999999988877663211 0011345
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------------------------------------------ce
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------------------------------------------PV 251 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------------~~ 251 (430)
..|.+++| +|++.+|++++.|++|++||+.+++. +.
T Consensus 240 ~~V~~v~~--spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~ 317 (611)
T 1nr0_A 240 GSVFGLTW--SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID 317 (611)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE
T ss_pred CCEEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc
Confidence 78999999 89999999999999999999987542 12
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee-CC-------------------------------
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GK------------------------------- 299 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~------------------------------- 299 (430)
..+.+|...|++++|+|++++|++++.|+.|++||+.+++....+. +|
T Consensus 318 ~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 318 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCC
Confidence 3445788999999999999999999999999999998765533220 00
Q ss_pred -------------------------------------------------CCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 300 -------------------------------------------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 300 -------------------------------------------------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
+...+.+++|+|++++|++|+.|+.|++||+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~ 477 (611)
T 1nr0_A 398 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 477 (611)
T ss_dssp SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred ccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEc
Confidence 0234678999999999999999999999999
Q ss_pred CCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.++...... ..+| ...|.+++|+|||++ ++++.|+.|++|+...
T Consensus 478 ~~~~~~~~~-~~~h-~~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 478 SGASVSEVK-TIVH-PAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp ETTEEEEEE-EEEC-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred cCCceeeee-ccCC-CCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 876543222 2456 556799999999999 9999999999999764
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-41 Score=301.65 Aligned_cols=272 Identities=17% Similarity=0.147 Sum_probs=231.8
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..++||+.||+|+||++..+ ...+...+.+|...+..++ + +|++.++++++.|++|++||+.+++.+..+..+
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~---~~~~~~~l~gh~~~v~~~~--~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~ 121 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDE---RLDLQWSLEGHQLGVVSVD--I--SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121 (321)
T ss_dssp CEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEE--E--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEcCCCCEEEEECCCC---CeeeeeeeccCCCCEEEEE--E--CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence 46999999999999999874 1123446788988855444 4 667889999999999999999999888777653
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+..+.+.+.. ..+++++.++.+.+|++.... .+..+. .+...|.+++|+|++
T Consensus 122 --------~~~~~~~~~spdg--------~~l~~g~~dg~v~i~~~~~~~--------~~~~~~-~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 122 --------PVDAWTLAFSPDS--------QYLATGTHVGKVNIFGVESGK--------KEYSLD-TRGKFILSIAYSPDG 176 (321)
T ss_dssp --------TTCCCCEEECTTS--------SEEEEECTTSEEEEEETTTCS--------EEEEEE-CSSSCEEEEEECTTS
T ss_pred --------CccEEEEEECCCC--------CEEEEEcCCCcEEEEEcCCCc--------eeEEec-CCCceEEEEEECCCC
Confidence 1234445554433 489999999999999975432 333333 456789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
++|++|+.|+.|++||+.+++.+..+..+. ..|.+++| +|++.+|++|+.|+.|++||++++. ....+
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~--spd~~~l~s~s~dg~i~iwd~~~~~-~~~~~ 244 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHA---------MPIRSLTF--SPDSQLLVTASDDGYIKIYDVQHAN-LAGTL 244 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCCCEEEE--CTTSCEEEEECTTSCEEEEETTTCC-EEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccC---------CceeEEEE--cCCCCEEEEEcCCCeEEEEECCCcc-eeEEE
Confidence 999999999999999999999998888765 67999999 8999999999999999999999865 47889
Q ss_pred eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 255 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.+|...|.+++|+|++.+|++++.|+.|++||+++++++..+.+| ...|.+++|+|++.+|++++.||.|+|||+.
T Consensus 245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999963
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.1e-42 Score=316.23 Aligned_cols=321 Identities=14% Similarity=0.088 Sum_probs=255.6
Q ss_pred CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE 102 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 102 (430)
+..+..|+.... .....+.+|.+.|.+++ | +|++++|++|+.||+|+|||+.+++....+..+.
T Consensus 45 ~~~~~~~~~~~~-----~~~~~l~gH~~~V~~~~--~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~------- 108 (380)
T 3iz6_a 45 GRTAVSFNPTDL-----VCCRTLQGHSGKVYSLD--W--TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC------- 108 (380)
T ss_dssp GGGCCCCCCCCC-----EEEEEECCCSSCEEEEE--E--CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC-------
T ss_pred ccccccccccee-----EEeecccccccEEEEEE--E--cCCCCEEEEEeCCCeEEEEECCCCccceEEecCC-------
Confidence 345566776665 67788999999965544 4 6788999999999999999999998888777642
Q ss_pred CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEe
Q 014154 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGG 181 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 181 (430)
..+.++.+.+.. ..+++++.|+.+.+|++.......+ .....+.+ ..|.+.+.++.|.|+ +..|++|+
T Consensus 109 -~~v~~~~~s~~g--------~~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s 177 (380)
T 3iz6_a 109 -PWVMECAFAPNG--------QSVACGGLDSACSIFNLSSQADRDG-NMPVSRVL-TGHKGYASSCQYVPDQETRLITGS 177 (380)
T ss_dssp -TTCCCCEECTTS--------SEEEECCSSSCCEEEECCCCSSCCC-SSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEEC
T ss_pred -CCEEEEEECCCC--------CEEEEeeCCCcEEEEECCCCccccC-Cccceeec-cCCCcceEEEEEecCCCCEEEEEC
Confidence 355555555433 4899999999999999864321100 00111222 257788999999986 56799999
Q ss_pred CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCe
Q 014154 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i 261 (430)
.|++|++||+.+++.+..+.... ...|...|.+++|. ++++.+|++|+.|+.|++||++....++..+.+|...|
T Consensus 178 ~D~~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~~~~~-~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v 252 (380)
T 3iz6_a 178 GDQTCVLWDVTTGQRISIFGSEF----PSGHTADVLSLSIN-SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI 252 (380)
T ss_dssp TTSCEEEECTTTCCEEEEECCCS----SSSCCSCEEEEEEC-SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC
T ss_pred CCCcEEEEEcCCCcEEEEeeccc----CCCCccCeEEEEee-cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe
Confidence 99999999999998887663321 11234779999994 34889999999999999999986556688999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
.+++|+|++++|++|+.|++|++||+++++.+..+..+. ...|++++|+|++.+|++|+.||.|++||+.+++.
T Consensus 253 ~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence 999999999999999999999999999999988876541 12489999999999999999999999999999988
Q ss_pred eeEEE--eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 336 LSAVF--LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ~~~~~--~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+..+. ..+| ...|++++|+|+|.+ ++++.|+.|++|+...
T Consensus 333 ~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 333 VLNLGTLQNSH-EGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEECCSCSSC-CCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEecccCCC-CCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 77642 1456 556799999999998 9999999999999765
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-41 Score=314.57 Aligned_cols=270 Identities=11% Similarity=0.148 Sum_probs=236.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||+|+|||+.++ ++...+.+|...|..++ | +|+|++|++|+.||+|+|||+.+++.+..+.+
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~h~~~V~~v~--~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~- 190 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDIS--F--DHSGKLLASCSADMTIKLWDFQGFECIRTMHG- 190 (410)
T ss_dssp SEEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEEEEE--E--CTTSSEEEEEETTSCCCEEETTSSCEEECCCC-
T ss_pred CEEEEEeCCCeEEEEECCCC-----cEEEEEeccCCcEEEEE--E--cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-
Confidence 46899999999999999987 67788999999855544 4 67888999999999999999998887777654
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+...+.++.+.+.. ..+++++.|+.+++|++.... .+..+. .|...|.++.++|++
T Consensus 191 -------h~~~V~~v~~~p~~--------~~l~s~s~D~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 191 -------HDHNVSSVSIMPNG--------DHIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDG 246 (410)
T ss_dssp -------CSSCEEEEEECSSS--------SEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTS
T ss_pred -------CCCCEEEEEEeCCC--------CEEEEEeCCCeEEEEECCCCc--------EEEEEe-CCCccEEEEEECCCC
Confidence 34578888877654 489999999999999986432 455554 678899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC--------------------CCEEEEEe
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--------------------HRKFVAGT 234 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~~~l~s~~ 234 (430)
.+|++|+.|++|++||+.+++....+..|. ..|.+++| +|+ +.+|++|+
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISW--APESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCC---------ceEEEEEE--cCcccccchhhhccccccccCCCCCEEEEEe
Confidence 999999999999999999998888887765 67999999 554 67899999
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 314 (430)
.|+.|++||++++. ++..+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+| ...|++++|+|++.
T Consensus 316 ~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 316 RDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAP 393 (410)
T ss_dssp TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCC
Confidence 99999999999865 58889999999999999999999999999999999999999999999998 89999999999999
Q ss_pred eEEEEeCCCcEEEEECC
Q 014154 315 IIASCGLDSYLRFWDIK 331 (430)
Q Consensus 315 ~l~s~~~dg~i~iwd~~ 331 (430)
+|++|+.||.|+||+++
T Consensus 394 ~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEETTSEEEEEC--
T ss_pred EEEEEeCCCcEEEEeCC
Confidence 99999999999999863
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.1e-41 Score=303.83 Aligned_cols=289 Identities=16% Similarity=0.163 Sum_probs=223.7
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccC---CCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG---DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
+.++.| +|||++|++++ |+++++||.............. ......+...+.++.|.+. +.+++++
T Consensus 33 v~~~~f--s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~l~~~s 100 (344)
T 4gqb_B 33 LEAARY--RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE---------RGILVAS 100 (344)
T ss_dssp EEEEEE--CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT---------TEEEEEE
T ss_pred EEEEEE--CCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC---------CeEEEEE
Confidence 445555 78899888776 7888888742111000000000 0000012346777777653 4889999
Q ss_pred cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
.+|.++||++..... ....+.....|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|.
T Consensus 101 ~dg~v~lWd~~~~~~-----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~------ 169 (344)
T 4gqb_B 101 DSGAVELWELDENET-----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA------ 169 (344)
T ss_dssp TTSEEEEEEECTTSS-----CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS------
T ss_pred CCCEEEEEeccCCCc-----eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC------
Confidence 999999999875431 112223334688999999999999999999999999999999999999998876
Q ss_pred cCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCC-CCEEEEEeCCCcEEEEE
Q 014154 211 FTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPD-SFNIYIGNGSGDLASVD 286 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd 286 (430)
..|.+++| ++++ .+|++++.|++|++||+++++. ...+. .|...+.+++|+|+ +++|++|+.|+.|++||
T Consensus 170 ---~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 170 ---AQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp ---SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ---CceEEEEe--cCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 77999999 7776 5889999999999999998664 55543 45567999999995 57889999999999999
Q ss_pred ccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--ccc
Q 014154 287 IRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAA 363 (430)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~ 363 (430)
+++++++..+.+| ...|++++|+|++ .+|++|+.|++|+|||+.+++++. +.+| ...|++++|+|++.. +++
T Consensus 244 ~~~~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---~~~H-~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 244 TKSTSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---SQAH-RDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp SCC--CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---ECCC-SSCEEEEEECSSSTTEEEEE
T ss_pred CCCCcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---EcCC-CCCEEEEEEeCCCCeEEEEE
Confidence 9999999999998 8999999999998 589999999999999999887653 5678 556799999999875 578
Q ss_pred CCCCceEecCCCC
Q 014154 364 ADAPMLEIQNGND 376 (430)
Q Consensus 364 ~~d~~i~~~~~~~ 376 (430)
+.|++|++|+.+.
T Consensus 319 s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 319 GWDHQVVHHVVPT 331 (344)
T ss_dssp ETTSCEEEEECCC
T ss_pred cCCCeEEEEECCC
Confidence 8999999999876
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-41 Score=308.59 Aligned_cols=314 Identities=14% Similarity=0.125 Sum_probs=229.4
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec------CCeEEEecCCCCcccc
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK------NGLTDILNPLNGDLRV 89 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~------dg~i~iwd~~~~~~~~ 89 (430)
.++.++.+.....|++... ....|...|.+ +.| +|||++||+|+. |+.|++|+..++....
T Consensus 18 ~~~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~--v~f--SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVT---------APACMEVQIGA--VRY--RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -------------------------------CCCSEEEE--EEE--CSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred eEEecCCCccccccCCCCC---------CcccccCCEEE--EEE--CCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3455566677888887653 12357777554 455 788999999997 7889999988776554
Q ss_pred eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
.+... ...+...+.++.|.+. +.+++++.+|.++||++...... .....-...|...|.+++
T Consensus 85 ~~~~~----~~~~~~~V~~~~~s~d---------~~~l~~s~dg~v~lWd~~~~~~~-----~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 85 SLCTA----GVQTEAGVTDVAWVSE---------KGILVASDSGAVELWEILEKESL-----LVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp GGCSE----EEECSSCEEEEEEETT---------TEEEEEETTSCEEEC-------------CCCCEEECCCSSCEEEEE
T ss_pred eEecc----cCCCCCCEEEEEEcCC---------CCEEEEECCCEEEEeecccccee-----EEEeeccCCCCCCEEEEE
Confidence 43220 1124457888887653 47788899999999998654320 011222336788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCC
Q 014154 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 248 (430)
|+|++++|++|+.|+.|++||+++++.+..+..|. ..|.+++| ++++ .++++++.|+.|++||+++++
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---------~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~ 215 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---------SEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPK 215 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--ccCCCceeeeeccCCceEEEECCCCc
Confidence 99999999999999999999999999999988765 77999999 6766 478999999999999999865
Q ss_pred cceEEE--eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCc
Q 014154 249 RPVMSF--DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSY 324 (430)
Q Consensus 249 ~~~~~~--~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~ 324 (430)
. ...+ ..|...+.+++|+|++ .+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++|+.|++
T Consensus 216 ~-~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 216 P-ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp C-BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred e-eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 3 3333 3466789999999975 68889999999999999999999999998 8999999999987 68999999999
Q ss_pred EEEEECCCCceeeEEEeeccccceEEeeeccc-cccc-cccCCCCceEecCCCCC
Q 014154 325 LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 325 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
|+|||+++++++.. .+| ...|++++|+| ++.+ ++++.|+.|++|+.+..
T Consensus 294 i~iwd~~~~~~~~~---~~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 294 VAVLDADFSEVFRD---LSH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEECTTSCEEEEE---CCC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEEECCCCcEeEE---CCC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999988765 357 55689999998 6777 89999999999998763
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.7e-39 Score=315.38 Aligned_cols=315 Identities=19% Similarity=0.264 Sum_probs=262.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++++.||.|++|+... +.+..+.+|...+..+ .+ +|+|++|++++.|+.|++||. +++.+..+.+
T Consensus 193 ~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~v~~~--~~--s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~- 260 (577)
T 2ymu_A 193 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGV--AF--SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG- 260 (577)
T ss_dssp SCEEEEETTSEEEEECTTS------CEEEEEECCSSCEEEE--EE--CTTSSCEEEEETTSCEEEECT-TSCEEEEECC-
T ss_pred CEEEEEcCCCEEEEEeCCC------cEEEEEecCCCCEEEE--EE--CCCCCEEEEEeCCCEEEEEeC-CCCEEEEEec-
Confidence 4688999999999999876 5777888898885544 44 678889999999999999996 5666666554
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe------------------eecCc----cccCCCc
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI------------------EVTKV----SAESSCS 152 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~------------------~~~~~----~~~~~~~ 152 (430)
+...+.++.+.+.. ..+++++.++.+++|+. .+.++ ++++.++
T Consensus 261 -------~~~~v~~v~~~~d~--------~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~ 325 (577)
T 2ymu_A 261 -------HSSSVNGVAFRPDG--------QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 325 (577)
T ss_dssp -------CSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -------CCCCEEEEEEcCCC--------CEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCC
Confidence 33467777665433 37788888888888763 23332 5667889
Q ss_pred ceEEeeec---------CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee
Q 014154 153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS 223 (430)
Q Consensus 153 ~i~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 223 (430)
.+++|+.. +...+.+++|+|++++|++++.|+.|++||. +++.+..+..+. ..|.+++|
T Consensus 326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~-- 393 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVRGVAF-- 393 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC---------CCeEEEEE--
Confidence 99999854 3467899999999999999999999999996 456666666654 67999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 303 (430)
+|++++|++++.|+.|++||... + .+..+.+|...|++++|+|++++|++++.|+.|++||+ +++.+..+.+| ...
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~~~-~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~ 469 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS 469 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECTTC-C-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred CCCCCEEEEEeCCCEEEEEeCCC-C-EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC-CCC
Confidence 89999999999999999999753 3 57888999999999999999999999999999999996 67788889998 899
Q ss_pred eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 304 v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
|++++|+|++++|++++.|+.|++||. +++++.. +.+| ...|++++|+|+|++ ++++.|+.|++|+.+.
T Consensus 470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~--~~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT--LTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE--EECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE--EeCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 999999999999999999999999995 6787777 6677 455799999999998 8899999999999653
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=295.52 Aligned_cols=303 Identities=11% Similarity=0.070 Sum_probs=237.2
Q ss_pred eeeeecCCCCC-CcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154 40 KVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
.++.++.+|.. . +.+++| +|+|++||+|+.|++|+|||+.++........ ..+|...+.++.+.+..
T Consensus 6 ~~~~~~~~h~~~~--v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-----~~~h~~~v~~~~~sp~g--- 73 (345)
T 3fm0_A 6 VLLGRVPAHPDSR--CWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-----SEGHQRTVRKVAWSPCG--- 73 (345)
T ss_dssp EEEEEECCSTTSC--EEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-----CSSCSSCEEEEEECTTS---
T ss_pred EEeeeecCCCCCc--EEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-----ccccCCcEEEEEECCCC---
Confidence 56778888877 6 445555 78899999999999999999977653322211 12455688888876644
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--- 195 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--- 195 (430)
..+++++.|+.+.+|++..... ..+..+. .|...|.+++|+|++++|++|+.|++|++||+.++.
T Consensus 74 -----~~l~s~s~D~~v~iw~~~~~~~------~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 74 -----NYLASASFDATTCIWKKNQDDF------ECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp -----SEEEEEETTSCEEEEEECCC-E------EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred -----CEEEEEECCCcEEEEEccCCCe------EEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 4899999999999999753310 1233333 578899999999999999999999999999998753
Q ss_pred eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecCCCCEEE
Q 014154 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (430)
.+..+..|. ..|.+++| +|++.+|++++.|+.|++||+..+. .....+.+|...|.+++|+|++++|+
T Consensus 142 ~~~~~~~h~---------~~v~~~~~--~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 142 CVSVLNSHT---------QDVKHVVW--HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp EEEEECCCC---------SCEEEEEE--CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEecCcC---------CCeEEEEE--CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence 344555544 67999999 8999999999999999999998754 23567889999999999999999999
Q ss_pred EEeCCCcEEEEEccCC---------------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce----
Q 014154 275 IGNGSGDLASVDIRTG---------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL---- 335 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~---- 335 (430)
+++.|++|++||.... +++..+.+.|...|++++|+|++..|++++.|+.|++|+...+..
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 9999999999997432 345566664588999999999999999999999999999875431
Q ss_pred eeEE---EeeccccceEEeeecccccc-c-cccCCCCceEecCCCCCc
Q 014154 336 LSAV---FLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 336 ~~~~---~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~~~~~~~~ 378 (430)
...+ ...+| ...|++++|+|++. + ++++.||.|++|+....+
T Consensus 291 ~~~~~~~~~~~h-~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 291 TFSLTAHLHQAH-SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp CEEEEEEETTSS-SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eEEEEeeecccc-cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 1111 12456 55679999999984 4 899999999999987643
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-39 Score=290.10 Aligned_cols=291 Identities=18% Similarity=0.246 Sum_probs=242.6
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.+...+.+|...|. ++.+ +|+|++|++|+.||.|++|++.+++....+.. +...+.++.+.+..
T Consensus 14 ~~~~~~~gh~~~v~--~~~~--s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--------h~~~v~~~~~~~~~---- 77 (312)
T 4ery_A 14 ALKFTLAGHTKAVS--SVKF--SPNGEWLASSSADKLIKIWGAYDGKFEKTISG--------HKLGISDVAWSSDS---- 77 (312)
T ss_dssp EEEEEECCCSSCEE--EEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTS----
T ss_pred eeEEEEcccCCcEE--EEEE--CCCCCEEEEeeCCCeEEEEeCCCcccchhhcc--------CCCceEEEEEcCCC----
Confidence 56677889999855 4455 67889999999999999999998887776654 34578877776543
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
..+++++.++.+.+|++.... .+..+. .|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus 78 ----~~l~s~~~d~~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 144 (312)
T 4ery_A 78 ----NLLVSASDDKTLKIWDVSSGK--------CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 144 (312)
T ss_dssp ----SEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ----CEEEEECCCCEEEEEECCCCc--------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence 489999999999999976332 444554 5778999999999999999999999999999999998888
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEeC
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
+..+. ..|.+++| +|++.+|++++.|+.|++||+++++. +..+ ..+...+.+++|+|++++|++++.
T Consensus 145 ~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 145 LPAHS---------DPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred ecCCC---------CcEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCce-eeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 87764 67999999 89999999999999999999998664 4443 456678999999999999999999
Q ss_pred CCcEEEEEccCCeEEeeeeCCCCCCe---EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154 279 SGDLASVDIRTGKLLGCFIGKCSGSI---RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~~~~~v---~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 355 (430)
|+.|++||+++++++..+.+| ...+ ......+++.+|++|+.||.|++||+.+++.+.. +.+| ...|.+++|+
T Consensus 213 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h-~~~v~~~~~~ 288 (312)
T 4ery_A 213 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGH-TDVVISTACH 288 (312)
T ss_dssp TTEEEEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE--ECCC-SSCEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh--hhcc-CCcEEEEeec
Confidence 999999999999999999887 4432 2233346788999999999999999999998887 6678 5567999999
Q ss_pred ccccc-cccC--CCCceEecCCC
Q 014154 356 DKEVA-NAAA--DAPMLEIQNGN 375 (430)
Q Consensus 356 ~~g~~-~~~~--~d~~i~~~~~~ 375 (430)
|++.+ ++++ .|+.|++|+.+
T Consensus 289 p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 289 PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSSEEEEEECTTTCCEEEEECC
T ss_pred CcCCceEEEEccCCccEEEecCC
Confidence 99998 5554 69999999864
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4e-39 Score=292.86 Aligned_cols=267 Identities=13% Similarity=0.195 Sum_probs=224.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc----cce
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~----~~~ 90 (430)
..+++|+.||+|+|||+..+ +.+..+..|...+ .++.+ +|+|++|++|+.|+.|++|++.++.. ...
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~~~~~~v--~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 138 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTT-----NKVHAIPLRSSWV--MTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp SEEEEEETTTEEEEEETTTC-----CEEEEEECSSSCE--EEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCC-----CcceEeecCCccE--EEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence 46899999999999999887 6777788888874 45555 77899999999999999999976542 222
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
+. ++...+.++.+.+. +.+++++.++.+++|++.... .+..+. .|...|.+++|
T Consensus 139 ~~--------~h~~~v~~~~~~~~---------~~l~s~s~d~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~ 192 (340)
T 1got_B 139 LA--------GHTGYLSCCRFLDD---------NQIVTSSGDTTCALWDIETGQ--------QTTTFT-GHTGDVMSLSL 192 (340)
T ss_dssp EE--------CCSSCEEEEEEEET---------TEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEE
T ss_pred ec--------CCCccEEEEEECCC---------CcEEEEECCCcEEEEECCCCc--------EEEEEc-CCCCceEEEEE
Confidence 22 24456776666432 479999999999999975332 344443 57889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
+|++++|++|+.|+.|++||+.++.....+..|. ..|.+++| +|++.+|++|+.|+.|++||++.+..
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~d~~v~iwd~~~~~~- 260 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICF--FPNGNAFATGSDDATCRLFDLRADQE- 260 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc---------CCEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCcE-
Confidence 9999999999999999999999999888887765 67999999 89999999999999999999998553
Q ss_pred eEEEee--cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154 251 VMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 251 ~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw 328 (430)
+..+.. +...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| ...|.+++|+|++.+|++|+.|+.|+||
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 444442 2347999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred E
Q 014154 329 D 329 (430)
Q Consensus 329 d 329 (430)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
No 18
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-40 Score=305.46 Aligned_cols=332 Identities=11% Similarity=0.087 Sum_probs=256.8
Q ss_pred ceeee----------cCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-
Q 014154 16 RALTF----------DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN- 84 (430)
Q Consensus 16 ~l~t~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~- 84 (430)
.+++| +.||.|+||++..+. ..+.+..+ .|... +.++.| +|++++|++|+.||.|++||+.+
T Consensus 27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~--~~~~~~~~-~~~~~--v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~ 99 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFSTDSSLELWSLLAAD--SEKPIASL-QVDSK--FNDLDW--SHNNKIIAGALDNGSLELYSTNEA 99 (416)
T ss_dssp EEEEBCBSSCCCSSCCCCCCCEEEESSSGG--GCSCSCCC-CCSSC--EEEEEE--CSSSSCEEEEESSSCEEEECCSST
T ss_pred EEEEEecCcccccccCCCCeEEEEEccCCC--CCcEEEEE-ecCCc--eEEEEE--CCCCCeEEEEccCCeEEEeecccc
Confidence 57777 889999999998851 11123333 36666 455555 77899999999999999999987
Q ss_pred ---CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE-eeec
Q 014154 85 ---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNVC 160 (430)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~-~~~~ 160 (430)
.+.+..+.. +...+.++.+.+... ..+++++.++.+.+|++......... .....+ ....
T Consensus 100 ~~~~~~~~~~~~--------h~~~v~~~~~~~~~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 163 (416)
T 2pm9_A 100 NNAINSMARFSN--------HSSSVKTVKFNAKQD-------NVLASGGNNGEIFIWDMNKCTESPSN-YTPLTPGQSMS 163 (416)
T ss_dssp TSCCCEEEECCC--------SSSCCCEEEECSSST-------TBEEEECSSSCEEBCBTTTTSSCTTT-CCCBCCCCSCC
T ss_pred cccccchhhccC--------CccceEEEEEcCCCC-------CEEEEEcCCCeEEEEECCCCcccccc-ccccccccccC
Confidence 234444433 445777788766533 58999999999999998654310000 001111 1124
Q ss_pred CCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCC-
Q 014154 161 ASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDH- 237 (430)
Q Consensus 161 ~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg- 237 (430)
|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+... ..+...|.+++| +|++ .+|++++.|+
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---SGIKQQLSVVEW--HPKNSTRVATATGSDN 238 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---SCCCCCEEEEEE--CSSCTTEEEEEECCSS
T ss_pred CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---cccCCceEEEEE--CCCCCCEEEEEECCCC
Confidence 6788999999998 789999999999999999999988887765211 111367999999 7876 6999999999
Q ss_pred --cEEEEECCCCCcceEEEe-ecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 238 --QVRLYDTSAQRRPVMSFD-FRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 238 --~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
.|++||++++..++..+. +|...|.+++|+| ++++|++++.|+.|++||+++++++..+.+| ...|.+++|+|++
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~ 317 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEA 317 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTC
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCC
Confidence 999999998756677888 8999999999999 8999999999999999999999999999998 8899999999999
Q ss_pred -CeEEEEeCCCcEEEEECCCCceeeEEE--------------eecc------------------ccceEEeeeccccccc
Q 014154 314 -PIIASCGLDSYLRFWDIKTRQLLSAVF--------------LKQH------------------LNEVVFDSAFADKEVA 360 (430)
Q Consensus 314 -~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~------------------~~~~v~~~~~s~~g~~ 360 (430)
.+|++++.|+.|++||+.++....... ..+. ....+.+++|+|+|++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 899999999999999998765432210 0000 1344578999999999
Q ss_pred -cccCCCCceEecCCCC
Q 014154 361 -NAAADAPMLEIQNGND 376 (430)
Q Consensus 361 -~~~~~d~~i~~~~~~~ 376 (430)
++++.|+.|++|+...
T Consensus 398 la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKI 414 (416)
T ss_dssp ECBCTTSSCBCCBCCCC
T ss_pred EEEeCCCCeEEEEEecc
Confidence 8889999999999875
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-38 Score=285.26 Aligned_cols=292 Identities=12% Similarity=0.136 Sum_probs=236.2
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----ccceeeccCCCCCCCCCCceEEEEEeec
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQPEDDGIVGLHLFKR 114 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (430)
.+..++.+|.+.|..++++.+ ++++|++|+.|++|++|++.... ++..+.+ |...+.++.+.+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~s~d 76 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------HSHIVQDCTLTAD 76 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--------CSSCEEEEEECTT
T ss_pred EEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCccccccceEEeC--------CcccEEEEEECCC
Confidence 566788999999766665431 23789999999999999986432 2334443 4557777776554
Q ss_pred CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 194 (430)
. ..+++++.|+.+++|++.... .+..+. .|...|.+++|+|++.+|++|+.|++|++||++ +
T Consensus 77 g--------~~l~s~s~D~~v~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~ 138 (319)
T 3frx_A 77 G--------AYALSASWDKTLRLWDVATGE--------TYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G 138 (319)
T ss_dssp S--------SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-S
T ss_pred C--------CEEEEEeCCCEEEEEECCCCC--------eeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-C
Confidence 3 489999999999999976432 444444 678899999999999999999999999999996 4
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeecC------CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID------DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp 268 (430)
..+..+..|. ..|.++.| .| ++..|++++.|+.|++||+++.. ....+.+|...|.+++|+|
T Consensus 139 ~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 139 QCLATLLGHN---------DWVSQVRV--VPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASP 206 (319)
T ss_dssp CEEEEECCCS---------SCEEEEEE--CCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECT
T ss_pred CeEEEEeccC---------CcEEEEEE--ccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcC
Confidence 5566666654 77999999 45 35589999999999999999854 4778889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee------
Q 014154 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK------ 342 (430)
Q Consensus 269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------ 342 (430)
++++|++|+.|+.|++||+++++++..+..+ ..|.+++|+|++.+|++++.+ .+++|++..+..+..+...
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc
Confidence 9999999999999999999999999998864 689999999999999988765 4999999987776653211
Q ss_pred ccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 343 QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 343 ~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.+ ...+.+++|+|||++ ++++.|+.|++|+...
T Consensus 284 ~~-~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 284 AA-EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GG-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred Cc-CcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 12 345789999999998 8999999999998753
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-38 Score=283.32 Aligned_cols=274 Identities=14% Similarity=0.085 Sum_probs=228.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||+|++||+.++ ..+..+..|...+..+++ .|++++|++|+.|++|++||+.+++.+..+.+|
T Consensus 26 ~~l~s~~~dg~v~lWd~~~~-----~~~~~~~~~~~~v~~~~~----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 96 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYETQ-----VEVRSIQVTETPVRAGKF----IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (304)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEE----EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEcCCCcEEEEECCCC-----ceeEEeeccCCcEEEEEE----eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC
Confidence 46899999999999999987 777888888888655555 567789999999999999999999988887764
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~ 173 (430)
.+.+.++.+.+.. ..+++++.|+.+++|++..... ....+ ..|...|.+++|+| +
T Consensus 97 --------~~~v~~~~~~~~~--------~~l~sgs~D~~v~lWd~~~~~~-------~~~~~-~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 97 --------PDYIRSIAVHPTK--------PYVLSGSDDLTVKLWNWENNWA-------LEQTF-EGHEHFVMCVAFNPKD 152 (304)
T ss_dssp --------SSCEEEEEECSSS--------SEEEEEETTSCEEEEEGGGTTE-------EEEEE-CCCCSCEEEEEECTTC
T ss_pred --------CCcEEEEEEcCCC--------CEEEEECCCCeEEEEECCCCcc-------hhhhh-cccCCcEEEEEECCCC
Confidence 4578888876654 4899999999999999864321 22333 36788999999999 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
+.+|++|+.|++|++||+.++.....+..+. ...+..+.|.+.+++.+|++|+.|+.|++||++++. ++..
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~ 223 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT 223 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-ccee
Confidence 7899999999999999998776655543321 256888899656688999999999999999999865 5889
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC--eEEEEeCCCcEEEEECC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIK 331 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~iwd~~ 331 (430)
+.+|...|.+++|+|++.+|++|+.||.|++||+++++++..+..| ...+.+++|+|++. ++++|+.|| +.+|++.
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 9999999999999999999999999999999999999999999988 88999999999875 577777665 7788875
Q ss_pred C
Q 014154 332 T 332 (430)
Q Consensus 332 ~ 332 (430)
+
T Consensus 302 ~ 302 (304)
T 2ynn_A 302 N 302 (304)
T ss_dssp -
T ss_pred c
Confidence 4
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.2e-38 Score=291.90 Aligned_cols=315 Identities=18% Similarity=0.150 Sum_probs=242.5
Q ss_pred CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCC--
Q 014154 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-- 99 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 99 (430)
.+....+|+......-..++...+ +|...|.+++| +|+|++||+|+ ++.++||++.+++.+..+..+.....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~f----spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~ 111 (393)
T 1erj_A 38 TNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKF----SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 111 (393)
T ss_dssp CSSCEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEE----CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred CCceEEEECCCCCcccCceeEEec-CCCCEEEEEEE----CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc
Confidence 344455777665311111222333 48888665555 67888999986 68999999999988777654321100
Q ss_pred --------CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 100 --------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 100 --------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
..+...+.++.+.+.. ..+++++.++.+++|++.... .+..+. .|...|.+++|+
T Consensus 112 ~~~~~~~~~~~~~~v~~v~~s~dg--------~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~ 174 (393)
T 1erj_A 112 ENLNTSSSPSSDLYIRSVCFSPDG--------KFLATGAEDRLIRIWDIENRK--------IVMILQ-GHEQDIYSLDYF 174 (393)
T ss_dssp ---------CCCCBEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEC
T ss_pred ccccccccCCCceeEEEEEECCCC--------CEEEEEcCCCeEEEEECCCCc--------EEEEEc-cCCCCEEEEEEc
Confidence 0122246666665543 489999999999999975322 334443 678899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
|++++|++++.|++|++||+.+++....+..+ ..+.+++| +| ++.+|++|+.|+.|++||++++..
T Consensus 175 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~--~~~~~~~l~~~s~d~~v~iwd~~~~~~- 241 (393)
T 1erj_A 175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE----------DGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSETGFL- 241 (393)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEE--CSTTCCEEEEEETTSCEEEEETTTCCE-
T ss_pred CCCCEEEEecCCCcEEEEECCCCeeEEEEEcC----------CCcEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCcE-
Confidence 99999999999999999999999887766532 56889999 66 899999999999999999998653
Q ss_pred eEEE-------eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC------------eEEeeeeCCCCCCeEEEEecC
Q 014154 251 VMSF-------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------------KLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 251 ~~~~-------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~v~~i~~~~ 311 (430)
+..+ .+|...|.+++|+|++++|++|+.|+.|++||+++. .+...+.+| ...|.+++|+|
T Consensus 242 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~ 320 (393)
T 1erj_A 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQ 320 (393)
T ss_dssp EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECG
T ss_pred EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECC
Confidence 4444 578899999999999999999999999999999753 345677788 88999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc------cccc-cccCCCCceEecCCCC
Q 014154 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD------KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~-~~~~~d~~i~~~~~~~ 376 (430)
++.+|++|+.|+.|++||+.+++.+.. +.+| ...|.+++|++ ++.+ ++++.|+.|++|+...
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~~~~~~--l~~h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSGNPLLM--LQGH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTCCEEEE--EECC-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEE--ECCC-CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999999999998877 6788 45568898876 6776 9999999999998754
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.2e-38 Score=286.52 Aligned_cols=297 Identities=12% Similarity=0.135 Sum_probs=230.3
Q ss_pred eeeeecCCCCCCcceeeeeecC--CCCCceeEEeecCCeEEEecCCCCcc-------cceeeccCCCCCCCCCCceEEEE
Q 014154 40 KVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLH 110 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~--~p~g~~l~~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~ 110 (430)
++...+.+|...|..+++.+.. .+++++|++|+.|++|+|||+.+.+. ...+. .|...+.++.
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--------~h~~~V~~~~ 83 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--------GHNHFVSDLA 83 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--------CCSSCEEEEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--------cCCCceEEEE
Confidence 4556788999998888775432 23889999999999999999875432 22222 3556788887
Q ss_pred EeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 014154 111 LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWD 190 (430)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d 190 (430)
+.+.. ..+++++.|+.+++|++.... .+..+. .|...|.+++|+|++++|++++.|++|++||
T Consensus 84 ~~~~~--------~~l~s~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 84 LSQEN--------CFAISSSWDKTLRLWDLRTGT--------TYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp ECSST--------TEEEEEETTSEEEEEETTSSC--------EEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred ECCCC--------CEEEEEcCCCcEEEEECCCCc--------EEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 76543 488999999999999986432 444444 6788999999999999999999999999999
Q ss_pred CCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC----------CEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154 191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----------RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP 260 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 260 (430)
+... ........ ..|...|.+++| +|++ .+|++++.|+.|++||... .....+.+|...
T Consensus 147 ~~~~-~~~~~~~~------~~~~~~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~ 215 (343)
T 2xzm_R 147 ILGE-CKFSSAEK------ENHSDWVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESN 215 (343)
T ss_dssp SSSC-EEEECCTT------TSCSSCEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSC
T ss_pred ccCC-ceeeeecc------cCCCceeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCcccc
Confidence 9743 33332211 113477999999 6665 7999999999999999543 346788899999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
|.+++|+|++++|++|+.|+.|++||++. ......+.. ...|.+++|+|++.+|+++ .|+.|++||+.+++.....
T Consensus 216 v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~ 292 (343)
T 2xzm_R 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC 292 (343)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE
T ss_pred ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE
Confidence 99999999999999999999999999954 344444433 4579999999999887655 5778999999887765422
Q ss_pred Eee-----------ccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 340 FLK-----------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 340 ~~~-----------~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.+. +| ...+.+++|+|+|.+ ++++.||.|++|+...
T Consensus 293 ~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 293 TIEAEPITKAEGQKGK-NPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ECCCCSGGGBTTBCCS-CCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EeecCcchhhhhhcCC-CCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 232 44 445799999999998 8999999999998643
No 23
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-38 Score=283.36 Aligned_cols=302 Identities=10% Similarity=0.065 Sum_probs=225.8
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
+++..+.+|...|..++++ |+ +||+|+.|++|++||+..+. ....+. ...|...+.++.+.+..
T Consensus 5 ~~~~~~~~h~~~v~~~~~s----~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------~~~h~~~v~~v~~sp~~-- 70 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFS----QG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------ETAHKKAIRSVAWRPHT-- 70 (330)
T ss_dssp EEEEEEECCSSCEEEEEEE----TT--EEEEEESSSCEEEEECSSSCCEEEEEEC------TTCCCSCEEEEEECTTS--
T ss_pred ccceeeccCCCceeeeccC----CC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------cCCccCCEEEEEECCCC--
Confidence 5677888999996665554 33 89999999999999997653 222221 11255688888876644
Q ss_pred cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 014154 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--- 194 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--- 194 (430)
..+++++.|+.+++|++....... .....+..+. .|...|.+++|+|++++|++|+.|++|++||+...
T Consensus 71 ------~~las~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 71 ------SLLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp ------SEEEEEETTSCEEEEEC--------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred ------CEEEEEeCCCcEEEEEcccCcCcc-ccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 489999999999999975321100 0011233332 57889999999999999999999999999999432
Q ss_pred -eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecCC--C
Q 014154 195 -EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD--S 270 (430)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp~--~ 270 (430)
+.+..+..|. ..|.+++| +|++.+|++|+.|++|++||...+. .++..+.+|...|.+++|+|+ +
T Consensus 143 ~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 143 YECISVLQEHS---------QDVKHVIW--HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211 (330)
T ss_dssp CEEEEEECCCS---------SCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred eEEEEEeccCC---------CceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence 4455666654 77999999 8999999999999999999987642 357788999999999999998 6
Q ss_pred CEEEEEeCCCcEEEEEccCC--------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce--eeEEE
Q 014154 271 FNIYIGNGSGDLASVDIRTG--------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL--LSAVF 340 (430)
Q Consensus 271 ~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~ 340 (430)
.+|++|+.|++|++||++.+ .+...+...|...|++++|++++ +|++++.||.|+|||..+++. +...
T Consensus 212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~- 289 (330)
T 2hes_X 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR- 289 (330)
T ss_dssp CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-
T ss_pred eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-
Confidence 78999999999999999764 44555665338899999999765 899999999999999987742 2221
Q ss_pred eeccccceEEeeeccc--cccc-cccCCCCceEecCCCC
Q 014154 341 LKQHLNEVVFDSAFAD--KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 341 ~~~~~~~~v~~~~~s~--~g~~-~~~~~d~~i~~~~~~~ 376 (430)
..+|....+.+++|+| ++.+ ++++.|+.|++|+...
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3566443689999999 6776 8999999999998754
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-37 Score=284.32 Aligned_cols=268 Identities=14% Similarity=0.197 Sum_probs=223.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc------c
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------R 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~------~ 88 (430)
.+++||+.||+|+|||...+ +....+..|...+. ++.+ +|+|.+|++|+.|+.+++|++..... .
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~~~~v~--~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~ 147 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-----NKEHAVTMPCTWVM--ACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAAKK 147 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-----CEEEEEECSSSCCC--EEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred CEEEEEeCCCeEEEEECCCC-----CcceEEecCCCCEE--EEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence 57999999999999999886 56666777777754 4455 77899999999999999999864421 1
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
..+. .|...+..+.+.+.. ..+++++.|+++++|++.... .+..+. .|...|.++
T Consensus 148 ~~~~--------~h~~~v~~~~~~~~~--------~~l~t~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~~ 202 (354)
T 2pbi_B 148 KSVA--------MHTNYLSACSFTNSD--------MQILTASGDGTCALWDVESGQ--------LLQSFH-GHGADVLCL 202 (354)
T ss_dssp EEEE--------ECSSCEEEEEECSSS--------SEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEE
T ss_pred eeee--------ccCCcEEEEEEeCCC--------CEEEEEeCCCcEEEEeCCCCe--------EEEEEc-CCCCCeEEE
Confidence 2222 345577777766544 489999999999999986432 455554 678899999
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 169 KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 169 ~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
+++| ++++|++|+.|+.|++||+++++.+..+..|. ..|.+++| +|++.+|++|+.|++|++||++.
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---------SDVNSVRY--YPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCeEEEEE--eCCCCEEEEEeCCCeEEEEECCC
Confidence 9988 46899999999999999999999988887765 77999999 89999999999999999999998
Q ss_pred CCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCc
Q 014154 247 QRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 247 ~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~ 324 (430)
... +..+..+ ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| ...|++++|+|++.+|++|+.|+.
T Consensus 272 ~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 272 DRE-VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp TEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSCEEEEETTSE
T ss_pred CcE-EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-CCcEEEEEECCCCCEEEEEcCCCC
Confidence 543 4455433 347899999999999999999999999999999999999998 899999999999999999999999
Q ss_pred EEEEE
Q 014154 325 LRFWD 329 (430)
Q Consensus 325 i~iwd 329 (430)
|+||+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=296.82 Aligned_cols=313 Identities=10% Similarity=0.069 Sum_probs=251.3
Q ss_pred ceeeecCCCceEEEEc----cCCCC-----CcceeeeecCC------CCCCcceeeeeecCCCCCceeEEeecCCeEEEe
Q 014154 16 RALTFDSLGLIKVIEA----RGEHG-----GVPKVVERWGD------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL 80 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~----~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iw 80 (430)
.|++|+.||.|++|++ ..+.. ....+...+.. |... +.++.| +|++++|++|+.||.|++|
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~--s~~~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQ--VTCLAW--SHDGNSIVTGVENGELRLW 135 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBC--EEEEEE--CTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCc--eEEEEE--cCCCCEEEEEeCCCeEEEE
Confidence 6899999999999999 76510 11112222222 4556 455555 7788999999999999999
Q ss_pred cCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec
Q 014154 81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
| .+++.+..+.. +...+.++.+.+.. ..+++++.++.+.+|++.... .+..+..
T Consensus 136 ~-~~~~~~~~~~~--------~~~~v~~~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~- 189 (425)
T 1r5m_A 136 N-KTGALLNVLNF--------HRAPIVSVKWNKDG--------THIISMDVENVTILWNVISGT--------VMQHFEL- 189 (425)
T ss_dssp E-TTSCEEEEECC--------CCSCEEEEEECTTS--------SEEEEEETTCCEEEEETTTTE--------EEEEECC-
T ss_pred e-CCCCeeeeccC--------CCccEEEEEECCCC--------CEEEEEecCCeEEEEECCCCc--------EEEEeec-
Confidence 9 56776666654 34578878776543 489999999999999985332 3333332
Q ss_pred CCCc---------------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 161 ASGT---------------IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 161 ~~~~---------------i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+... +.+++|+|+ ..+++++.++.|++||+.+++.+..+..+. ..|.+++| +|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~ 257 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH---------GPISVLEF--ND 257 (425)
T ss_dssp C---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS---------SCEEEEEE--ET
T ss_pred cccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC---------CceEEEEE--CC
Confidence 1222 888999986 468889999999999999988887777654 67999999 78
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
++.+|++++.|+.|++||+++++ ++..+..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+..| ...|.
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~ 334 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIF 334 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEE
Confidence 99999999999999999999855 578888899999999999999 9999999999999999999999999988 88999
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCc--------------------eeeEEEeeccccc-eEEeeeccccccc-ccc
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQ--------------------LLSAVFLKQHLNE-VVFDSAFADKEVA-NAA 363 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~-~v~~~~~s~~g~~-~~~ 363 (430)
+++|+|++.+|++++.||.|++||+.+++ .+.. +.+|... .|.+++|+|++++ +++
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS--YQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE--ECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh--hcCcccCCceEEEEccCCCceEEEE
Confidence 99999999999999999999999999887 6666 5566443 6899999999998 899
Q ss_pred CCCCceEecCCC
Q 014154 364 ADAPMLEIQNGN 375 (430)
Q Consensus 364 ~~d~~i~~~~~~ 375 (430)
+.||.|++|+.+
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999875
No 26
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.3e-39 Score=295.24 Aligned_cols=282 Identities=13% Similarity=0.151 Sum_probs=224.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||+|+|||+.++ +....+..|...+..+ .| +|+|++|++|+.|+.|++||+.+.........
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~-----~~~~~~~~h~~~v~~~--~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~- 148 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTS-----QKTHAIKLHCPWVMEC--AF--APNGQSVACGGLDSACSIFNLSSQADRDGNMP- 148 (380)
T ss_dssp SCEEEEETTSEEEEEETTTT-----EEEEEEECCCTTCCCC--EE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSST-
T ss_pred CEEEEEeCCCeEEEEECCCC-----ccceEEecCCCCEEEE--EE--CCCCCEEEEeeCCCcEEEEECCCCccccCCcc-
Confidence 56999999999999999987 7778888898885544 44 77899999999999999999865331110000
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee----ecCCCceEEEEE
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----VCASGTIAFSKV 170 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~----~~~~~~i~~~~~ 170 (430)
....+.+|...+..+.+.+... ..+++++.|+.+++|++.... .+..+. ..|...|.++++
T Consensus 149 ~~~~~~gh~~~v~~~~~~~~~~-------~~l~s~s~D~~i~~wd~~~~~--------~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 149 VSRVLTGHKGYASSCQYVPDQE-------TRLITGSGDQTCVLWDVTTGQ--------RISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp TCCBCCCCSSCCCCCBCCSSSS-------SCEEEECTTSCEEEECTTTCC--------EEEEECCCSSSSCCSCEEEEEE
T ss_pred ceeeccCCCcceEEEEEecCCC-------CEEEEECCCCcEEEEEcCCCc--------EEEEeecccCCCCccCeEEEEe
Confidence 0001223445565555555433 579999999999999976433 344432 346788999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 171 DI-SEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 171 ~~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
++ ++++|++|+.|++|++||++ ....+..+..|. ..|.+++| +|++.+|++|+.|++|++||++++.
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE---------GDINSVKF--FPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS---------SCCCEEEE--CTTSSEEEEECSSSCEEEEETTTTE
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC---------CCeEEEEE--ecCCCeEEEEcCCCeEEEEECCCCc
Confidence 87 88999999999999999997 446666777665 77999999 8999999999999999999999865
Q ss_pred cceEEEeecC-------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee----eCCCCCCeEEEEecCCCCeEE
Q 014154 249 RPVMSFDFRE-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 249 ~~~~~~~~~~-------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~ 317 (430)
. +..+..+. ..|++++|+|++++|++|+.||.|++||+.+++.+..+ .+| ...|++++|+|++.+|+
T Consensus 283 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 283 Q-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALC 360 (380)
T ss_dssp E-EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEEE
T ss_pred E-EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEEE
Confidence 3 55555432 24899999999999999999999999999999887777 456 88999999999999999
Q ss_pred EEeCCCcEEEEECCCCc
Q 014154 318 SCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~ 334 (430)
+|+.|+.|+||++...+
T Consensus 361 sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EECTTSCEEEEECCSSS
T ss_pred EeeCCCCEEEEecCCCc
Confidence 99999999999998654
No 27
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-37 Score=279.67 Aligned_cols=275 Identities=9% Similarity=0.112 Sum_probs=225.6
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||+|++|++..........+..+.+|...+..++ + +|+|++|++|+.|++|+|||+.+++.+..+.+|
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~--~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h 106 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--L--TADGAYALSASWDKTLRLWDVATGETYQRFVGH 106 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEE--E--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEE--E--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC
Confidence 468999999999999997532222245667889999855544 4 678899999999999999999999988877664
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
...+.++.+.+.. ..+++++.|+.+++|++.. ..+..+ ..|...|.++.++|.
T Consensus 107 --------~~~v~~~~~~~~~--------~~l~s~s~D~~i~vwd~~~---------~~~~~~-~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 107 --------KSDVMSVDIDKKA--------SMIISGSRDKTIKVWTIKG---------QCLATL-LGHNDWVSQVRVVPNE 160 (319)
T ss_dssp --------SSCEEEEEECTTS--------CEEEEEETTSCEEEEETTS---------CEEEEE-CCCSSCEEEEEECCC-
T ss_pred --------CCcEEEEEEcCCC--------CEEEEEeCCCeEEEEECCC---------CeEEEE-eccCCcEEEEEEccCC
Confidence 4578877776543 4899999999999999742 133333 367788999999985
Q ss_pred -----CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 174 -----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 174 -----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
+..|++++.|+.|++||+.+.+....+..|. ..|.+++| +|++.+|++|+.|+.|++||+.+++
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~--sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN---------SNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCC---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC---------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4589999999999999999998888887765 77999999 8999999999999999999999855
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-------CCCCeEEEEecCCCCeEEEEeC
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
++..+..+ ..|.+++|+|++.+|++++.+ .+++|++..+..+..+..+ +...+.+++|+|+|++|++|+.
T Consensus 230 -~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 230 -AMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp -EEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred -EEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 46666654 689999999999999988755 5999999888777666432 2567899999999999999999
Q ss_pred CCcEEEEECCCC
Q 014154 322 DSYLRFWDIKTR 333 (430)
Q Consensus 322 dg~i~iwd~~~~ 333 (430)
||.|+|||+.++
T Consensus 307 Dg~i~vWd~~t~ 318 (319)
T 3frx_A 307 DNVIRVWQVMTA 318 (319)
T ss_dssp TSCEEEEEEEEC
T ss_pred CceEEEEEEeec
Confidence 999999998764
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=286.08 Aligned_cols=285 Identities=12% Similarity=0.051 Sum_probs=214.2
Q ss_pred CCcceeeecCCCceEEEEccCCC----C--CcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154 13 PPLRALTFDSLGLIKVIEARGEH----G--GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD 86 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~ 86 (430)
|..++++++.|+++|+||..... . ...........+...|. ++.| +|++ +|++|+.||+|+|||+.+++
T Consensus 40 ~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~ 114 (344)
T 4gqb_B 40 SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA--DLTW--VGER-GILVASDSGAVELWELDENE 114 (344)
T ss_dssp TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE--EEEE--ETTT-EEEEEETTSEEEEEEECTTS
T ss_pred CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEE--EEEE--eCCC-eEEEEECCCEEEEEeccCCC
Confidence 34566666678899999854210 0 00001111112344544 4444 4554 58899999999999999988
Q ss_pred ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
.+..+... ...|.+.|.++.+.+.. ..+++++.++.+++|++.... .+..+. .|...|.
T Consensus 115 ~~~~~~~~----~~~H~~~V~~v~~spdg--------~~l~sgs~d~~i~iwd~~~~~--------~~~~~~-~h~~~V~ 173 (344)
T 4gqb_B 115 TLIVSKFC----KYEHDDIVSTVSVLSSG--------TQAVSGSKDICIKVWDLAQQV--------VLSSYR-AHAAQVT 173 (344)
T ss_dssp SCEEEEEE----EECCSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEE
T ss_pred ceeEeecc----ccCCCCCEEEEEECCCC--------CEEEEEeCCCeEEEEECCCCc--------EEEEEc-CcCCceE
Confidence 76654421 12355688888876654 489999999999999976432 444554 6889999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEEC
Q 014154 167 FSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 167 ~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~ 244 (430)
+++|+|++ .+|++++.|++|++||+++++....+.... +...+.+++| +| ++.+|++|+.|+.|++||+
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~--~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA-------PGYLPTSLAW--HPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------CCCEEEEEE--CSSCTTEEEEEETTSEEEEEES
T ss_pred EEEecCCCCCceeeeccccccccccccccceeeeeecce-------eeccceeeee--cCCCCcceEEeccCCcEEEEEC
Confidence 99999987 578999999999999999988877765432 1245889999 55 5678999999999999999
Q ss_pred CCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCC
Q 014154 245 SAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLD 322 (430)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d 322 (430)
++++ ++..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++++ .+.+| ...|++++|+|++. +|++++.|
T Consensus 245 ~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H-~~~V~~v~~sp~~~~llas~s~D 321 (344)
T 4gqb_B 245 KSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAH-RDFVRDATWSPLNHSLLTTVGWD 321 (344)
T ss_dssp CC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCC-SSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCC-CCCEEEEEEeCCCCeEEEEEcCC
Confidence 9865 588999999999999999998 57999999999999999998865 57788 89999999999986 56799999
Q ss_pred CcEEEEECCCCce
Q 014154 323 SYLRFWDIKTRQL 335 (430)
Q Consensus 323 g~i~iwd~~~~~~ 335 (430)
++|++|++.+...
T Consensus 322 ~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 322 HQVVHHVVPTEPL 334 (344)
T ss_dssp SCEEEEECCC---
T ss_pred CeEEEEECCCCCC
Confidence 9999999987543
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-38 Score=295.71 Aligned_cols=323 Identities=11% Similarity=0.094 Sum_probs=251.8
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.++++++.||.|++||+..+ +....+..| .+ .....+ +|++++|++|+.||.|++||+.+++....+..
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~--~~-~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 137 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIR-----DGSKMLKRA--DY-TAVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREIDQA- 137 (420)
T ss_dssp TTEEEEEETTEEEEEECCSE-----ETTTTSCSC--CE-EEEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEETTS-
T ss_pred CeEEEEEcCCcEEEEEeccc-----ceeeEEecC--Cc-eEEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeeeccc-
Confidence 56899999999999999886 444444444 22 222234 67889999999999999999988876665443
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+...+.++.+.+.. ..+++++.++.+.+|++.... .+..+. .|...|.+++|+|++
T Consensus 138 -------h~~~v~~~~~~~~~--------~~l~s~s~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 138 -------HVSEITKLKFFPSG--------EALISSSQDMQLKIWSVKDGS--------NPRTLI-GHRATVTDIAIIDRG 193 (420)
T ss_dssp -------SSSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTCC--------CCEEEE-CCSSCEEEEEEETTT
T ss_pred -------ccCccEEEEECCCC--------CEEEEEeCCCeEEEEeCCCCc--------CceEEc-CCCCcEEEEEEcCCC
Confidence 45688888876644 489999999999999986432 444554 678999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC---------------CcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG---------------IFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
++|++++.|+.|++||+.+++.+..+..+...... ..+...+.+++| +|++.+|++++.||.|
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF--GTYGKYVIAGHVSGVI 271 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS--SCTTEEEEEEETTSCE
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE--cCCCCEEEEEcCCCeE
Confidence 99999999999999999999998888754322111 011244556666 7899999999999999
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
++||++++.........|...|.+++|+|++. +|++|+.||.|++||+++++. +..+..|+...|.++.| +++.+|+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~ 350 (420)
T 3vl1_A 272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFV 350 (420)
T ss_dssp EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE
T ss_pred EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE
Confidence 99999987654444455888999999999998 999999999999999998754 77788765888988865 5778999
Q ss_pred EEeCCCcEEEEECCCCceeeE-------EEeeccccceEEeeecccccc----ccccCCCCceEecCCCC
Q 014154 318 SCGLDSYLRFWDIKTRQLLSA-------VFLKQHLNEVVFDSAFADKEV----ANAAADAPMLEIQNGND 376 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~g~----~~~~~~d~~i~~~~~~~ 376 (430)
+++.|+.|++|++........ ..+.++ ...+.+++|+|++. +++++.+|.+.+|+...
T Consensus 351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 351 SSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EecCCccEEEEeccCCCCCccceeccCccEEccC-CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999999999876322111 013344 45579999999999 58888999999998754
No 30
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-36 Score=287.05 Aligned_cols=305 Identities=14% Similarity=0.196 Sum_probs=258.2
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
...+++|+.||.|++||+.++ +.+..+.+|...+..++++ +++|++|+.||.|++||+.+++.+..+.+
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 197 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMR------DNIIISGSTDRTLKVWNAETGECIHTLYG 197 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEECCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEec------CCEEEEEeCCCeEEEEECCcCcEEEEECC
Confidence 467899999999999999987 7888899999986655553 35899999999999999999988877765
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
+ ...+.++.+. . ..+++++.+|.+.+|++.... .+..+. .|...|.++++ +
T Consensus 198 h--------~~~v~~~~~~---~-------~~l~s~s~dg~i~~wd~~~~~--------~~~~~~-~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 198 H--------TSTVRCMHLH---E-------KRVVSGSRDATLRVWDIETGQ--------CLHVLM-GHVAAVRCVQY--D 248 (445)
T ss_dssp C--------SSCEEEEEEE---T-------TEEEEEETTSEEEEEESSSCC--------EEEEEE-CCSSCEEEEEE--C
T ss_pred C--------CCcEEEEEec---C-------CEEEEEeCCCEEEEEECCCCc--------EEEEEc-CCcccEEEEEE--C
Confidence 3 4477777662 2 589999999999999986432 344444 57789999999 6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
++++++++.|+.|++||+.+++.+..+..+. ..|.++.| ++.++++++.|+.|++||+++++ ++..
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~-~~~~ 314 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETGN-CIHT 314 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEecCCC---------CceEEEEE----CCCEEEEEeCCCeEEEEECCCCC-EEEE
Confidence 8899999999999999999999998887765 67899988 78899999999999999999866 5788
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC---CCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
+.+|...+.++.++ +++|++|+.||.|++||+++++.+..+.. | ...|++++|+ +.+|++++.||.|++||+
T Consensus 315 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 89999999988875 56999999999999999999999999886 5 7899999995 579999999999999999
Q ss_pred CCCceeeEEEe--eccccceEEeeeccccccc-cccCCCCc----eEecCCCCC
Q 014154 331 KTRQLLSAVFL--KQHLNEVVFDSAFADKEVA-NAAADAPM----LEIQNGNDT 377 (430)
Q Consensus 331 ~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~-~~~~~d~~----i~~~~~~~~ 377 (430)
.+++.+..+.. .+.....+++++|+|++.+ ++++.||. +.+|+....
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 390 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999887521 1223667899999999999 88999997 999998763
No 31
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.1e-36 Score=273.20 Aligned_cols=310 Identities=11% Similarity=0.062 Sum_probs=245.1
Q ss_pred eeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 18 ~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
+++..++.+.+|..... .......+|...+..+++ +|++++|++++ ||.|++||+.++.....+....
T Consensus 25 ~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~-- 92 (337)
T 1gxr_A 25 PVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTI----SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD-- 92 (337)
T ss_dssp ECCCCTTSSSSTTCCSE-----EEEEEEECCSSCCCEEEE----CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE--
T ss_pred EeecCCCcEeccccCCc-----cccceeccCCCceEEEEE----ecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc--
Confidence 34555555555544432 222233468888665554 67888999998 9999999998776444433211
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
...+...+.++.+.+.. ..+++++.++.+.+|++..... ........+...|.+++|+|++++|
T Consensus 93 -~~~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 93 -CLNRDNYIRSCKLLPDG--------CTLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp -CSCTTSBEEEEEECTTS--------SEEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred -ccCCCCcEEEEEEcCCC--------CEEEEEcCCCcEEEEECCCCCc-------ceeeecccCCCceEEEEECCCCCEE
Confidence 11345678888776643 4889999999999999864321 1222233567889999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec
Q 014154 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR 257 (430)
Q Consensus 178 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 257 (430)
++++.|+.|++||+++++.+..+..+. ..+.+++| +|++.+|++++.|+.|++||+++++ .+..+ .+
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~-~~ 223 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDI--SNDGTKLWTGGLDNTVRSWDLREGR-QLQQH-DF 223 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTE-EEEEE-EC
T ss_pred EEEeCCCcEEEEeCCCCceeeeeeccc---------CceEEEEE--CCCCCEEEEEecCCcEEEEECCCCc-eEeee-cC
Confidence 999999999999999999888887654 67999999 8999999999999999999999865 34444 46
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154 258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 337 (430)
...+.+++|+|++++|++++.++.|++||+++++.. .+..| ...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 789999999999999999999999999999988764 56676 8899999999999999999999999999999998875
Q ss_pred EEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
.. .| ...+.+++|+|++++ ++++.|+.|++|+.
T Consensus 302 ~~---~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 302 QS---KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE---EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred Ee---cC-CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 42 24 455799999999998 88999999999975
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.7e-36 Score=273.16 Aligned_cols=319 Identities=11% Similarity=0.100 Sum_probs=236.6
Q ss_pred eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
+|...|+..+|-.... .+...+..+|.+|.+.|.++++ +|+ +++||+|+.||+|+|||+.+++........
T Consensus 9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~GH~~~V~~v~~----sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~--- 80 (340)
T 4aow_A 9 SGVDLGTENLYFQSMM-TEQMTLRGTLKGHNGWVTQIAT----TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR--- 80 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEE----CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE---
T ss_pred cccCCCCccEEEEEcc-CCceEEEEEECCccCCEEEEEE----eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE---
Confidence 4445565444422221 1222566789999999766665 454 579999999999999999766533221110
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
.+.++...+.++.+.+.. ..+++++.++.+.+|..... ........+...+..+.+++++++|
T Consensus 81 ~l~~h~~~V~~~~~s~dg--------~~l~s~~~d~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l 143 (340)
T 4aow_A 81 ALRGHSHFVSDVVISSDG--------QFALSGSWDGTLRLWDLTTG---------TTTRRFVGHTKDVLSVAFSSDNRQI 143 (340)
T ss_dssp EECCCSSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EEeCCCCCEEEEEECCCC--------CEEEEEcccccceEEeeccc---------ceeeeecCCCCceeEEEEeecCccc
Confidence 022355688888776544 48999999999999986533 2233333556788889999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154 178 LFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256 (430)
Q Consensus 178 ~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 256 (430)
++++.|+.+++||+........ ...+ ...+..++|.+.+...++++++.|+.|++||+++++ .+..+.+
T Consensus 144 ~s~s~d~~~~~~d~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~ 213 (340)
T 4aow_A 144 VSGSRDKTIKLWNTLGVCKYTVQDESH---------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIG 213 (340)
T ss_dssp EEEETTSCEEEECTTSCEEEEECSSSC---------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECC
T ss_pred eeecCCCeEEEEEeCCCceEEEEeccc---------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecC
Confidence 9999999999999976554332 2222 367899999544556789999999999999999865 5788899
Q ss_pred cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 336 (430)
|...|++++|+|++++|++|+.|+.|++||+++.+++..+..+ ..|.++.|+|++.+ ++++.|+.|++||++++..+
T Consensus 214 h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEE
Confidence 9999999999999999999999999999999999999988874 68999999998764 56667999999999988777
Q ss_pred eEEE-------eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 337 SAVF-------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~-------~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
..+. ..+| ...|++++|+|+|++ ++++.||.|++|+...
T Consensus 291 ~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 291 DELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 6532 1244 455799999999998 9999999999998754
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=276.33 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=216.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~ 92 (430)
..|++|+.||+|+||++..+. .........+|...|. ++.| +|+|++|++|+.|++|+||++..+. .+..+.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~--~~~~~~~~~~h~~~v~--~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 102 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRTVR--KVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLE 102 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTE--EEEEEEECSSCSSCEE--EEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred CEEEEEcCCCeEEEEEcCCCc--ceeeeeeccccCCcEE--EEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence 568899999999999998751 0001122357888855 4555 7788999999999999999987664 334444
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
+ |...+.++.+.+.. ..+++++.|+.+++|++..... ...+..+. .|...|.+++|+|
T Consensus 103 ~--------h~~~v~~v~~sp~~--------~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~-~h~~~v~~~~~~p 160 (345)
T 3fm0_A 103 G--------HENEVKSVAWAPSG--------NLLATCSRDKSVWVWEVDEEDE-----YECVSVLN-SHTQDVKHVVWHP 160 (345)
T ss_dssp C--------CSSCEEEEEECTTS--------SEEEEEETTSCEEEEEECTTSC-----EEEEEEEC-CCCSCEEEEEECS
T ss_pred C--------CCCCceEEEEeCCC--------CEEEEEECCCeEEEEECCCCCC-----eEEEEEec-CcCCCeEEEEECC
Confidence 3 45688888876644 4899999999999999864321 01233333 5778899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe--eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-- 248 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-- 248 (430)
++++|++++.|+.|++||+.++. ....+..|. ..|.+++| +|++++|++++.|++|++||.....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---------~~v~~l~~--sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHE---------STVWSLAF--DPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---------CceEEEEE--CCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99999999999999999998765 345666654 77999999 8999999999999999999964321
Q ss_pred ------------cceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--------E-EeeeeCCCCCCeEE
Q 014154 249 ------------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------L-LGCFIGKCSGSIRS 306 (430)
Q Consensus 249 ------------~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------~-~~~~~~~~~~~v~~ 306 (430)
..+..+.+ |...|.+++|+|++..|++++.|+.|++|+..... . ...+.+| ...|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 308 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNC 308 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeE
Confidence 11233444 78899999999999999999999999999987542 1 1223466 889999
Q ss_pred EEecCCC-CeEEEEeCCCcEEEEECCCCceeeE
Q 014154 307 IARHPTL-PIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 307 i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
++|+|++ .+|++|+.||.|++|++.+++....
T Consensus 309 v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 309 VAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 9999998 4999999999999999998876654
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-36 Score=280.41 Aligned_cols=283 Identities=17% Similarity=0.197 Sum_probs=223.9
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCC----------------CcceeeeeecCCCCCceeEEeecCCe
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS----------------SNCVLAASIDDSQNDPLLAVARKNGL 76 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~p~g~~l~~g~~dg~ 76 (430)
|..++++.+.++.++||++..+ +.+..+..+.. ...+.+++| +|+|++|++|+.||.
T Consensus 74 pdg~~la~g~~~~v~i~~~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 74 NDGEYLATGCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRL 146 (393)
T ss_dssp TTSSEEEEECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEE--CTTSSEEEEEETTSC
T ss_pred CCCCEEEEEcCCcEEEEEecCC-----CEEEEecCccccccccccccccccCCCceeEEEEEE--CCCCCEEEEEcCCCe
Confidence 4444444455899999999887 55555554431 223556777 889999999999999
Q ss_pred EEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE
Q 014154 77 TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS 156 (430)
Q Consensus 77 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~ 156 (430)
|+|||+.+++.+..+.+| ...+.++.+.+.. ..+++++.|+.+++|++.... .+..
T Consensus 147 i~iwd~~~~~~~~~~~~h--------~~~v~~~~~~p~~--------~~l~s~s~d~~v~iwd~~~~~--------~~~~ 202 (393)
T 1erj_A 147 IRIWDIENRKIVMILQGH--------EQDIYSLDYFPSG--------DKLVSGSGDRTVRIWDLRTGQ--------CSLT 202 (393)
T ss_dssp EEEEETTTTEEEEEECCC--------SSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTTE--------EEEE
T ss_pred EEEEECCCCcEEEEEccC--------CCCEEEEEEcCCC--------CEEEEecCCCcEEEEECCCCe--------eEEE
Confidence 999999998877776653 4578888876654 489999999999999975332 2222
Q ss_pred eeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154 157 WNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 235 (430)
..+...+.+++++| ++++|++|+.|+.|++||+.++..+..+..... ....|...|.+++| +|++.+|++|+.
T Consensus 203 --~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~--~~~g~~l~s~s~ 276 (393)
T 1erj_A 203 --LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--SGTGHKDSVYSVVF--TRDGQSVVSGSL 276 (393)
T ss_dssp --EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEE--CTTSSEEEEEET
T ss_pred --EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc--CCCCCCCCEEEEEE--CCCCCEEEEEeC
Confidence 33567899999999 899999999999999999999887776643211 01224478999999 899999999999
Q ss_pred CCcEEEEECCCCC-----------cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 236 DHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 236 dg~i~iwd~~~~~-----------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
|+.|++||++... .....+.+|...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+| ...|
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v 355 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSV 355 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCE
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCE
Confidence 9999999997532 134567789999999999999999999999999999999999999999998 8999
Q ss_pred EEEEecC------CCCeEEEEeCCCcEEEEECCCC
Q 014154 305 RSIARHP------TLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 305 ~~i~~~~------~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
.+++|++ ++.+|++|+.||.|+||++...
T Consensus 356 ~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999886 6789999999999999998643
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.8e-37 Score=281.40 Aligned_cols=281 Identities=14% Similarity=0.111 Sum_probs=209.6
Q ss_pred cceeeecC------CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 15 LRALTFDS------LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 15 ~~l~t~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
..|++|+. ||.|++|+...+. ....+.....+|...|..++| +|++. +++++.||+|+|||+.+++..
T Consensus 55 ~~las~s~d~~~~wd~~v~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~----s~d~~-~l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 55 ALLLAASSLSSRTWGGSIWVFKDPEGA-PNESLCTAGVQTEAGVTDVAW----VSEKG-ILVASDSGAVELWEILEKESL 128 (357)
T ss_dssp CEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEEEECSSCEEEEEE----ETTTE-EEEEETTSCEEEC--------
T ss_pred CEEEEEcCCCCccccCeEEEEECCCCC-cceeEecccCCCCCCEEEEEE----cCCCC-EEEEECCCEEEEeecccccee
Confidence 45777776 6789999887652 111223334457777555554 45655 566788999999999887754
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS 168 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~ 168 (430)
..... ....|.+.+.++.+.+.. ..+++++.++.+++|++.... .+..+. .|...|.++
T Consensus 129 ~~~~~----~~~~h~~~V~~v~~spdg--------~~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~h~~~v~~v 187 (357)
T 4g56_B 129 LVNKF----AKYEHDDIVKTLSVFSDG--------TQAVSGGKDFSVKVWDLSQKA--------VLKSYN-AHSSEVNCV 187 (357)
T ss_dssp CCCCE----EECCCSSCEEEEEECSSS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEE
T ss_pred EEEee----ccCCCCCCEEEEEECCCC--------CEEEEEeCCCeEEEEECCCCc--------EEEEEc-CCCCCEEEE
Confidence 43321 012355688888887654 389999999999999975332 444444 578899999
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCC
Q 014154 169 KVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 169 ~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 246 (430)
+|++++. ++++++.|+.|++||+++++....+.... +...+.+++| +|+ +.+|++|+.|+.|++||+++
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-------~~~~v~~v~~--sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA-------SDTIPTSVTW--HPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT-------CCSCEEEEEE--CTTSTTEEEEEESSSCEEEEESSC
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeecc-------ccccccchhh--hhcccceEEEeecccceeEEECCC
Confidence 9999874 78999999999999999887765544322 2266899999 665 56899999999999999998
Q ss_pred CCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC-CCCeEEEEeCCCc
Q 014154 247 QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSY 324 (430)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~ 324 (430)
++ ++..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++++..+ +| ...|++++|+| ++.+|++++.||+
T Consensus 259 ~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 259 PD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp GG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEEETTSC
T ss_pred Cc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEEcCCCe
Confidence 65 588899999999999999987 67999999999999999999887655 66 89999999999 7899999999999
Q ss_pred EEEEECCCCc
Q 014154 325 LRFWDIKTRQ 334 (430)
Q Consensus 325 i~iwd~~~~~ 334 (430)
|++|++.+..
T Consensus 336 v~iW~~~~~~ 345 (357)
T 4g56_B 336 VLHHHLPSEG 345 (357)
T ss_dssp EEEEECC---
T ss_pred EEEEECCCCC
Confidence 9999997543
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-36 Score=276.01 Aligned_cols=276 Identities=12% Similarity=0.088 Sum_probs=217.6
Q ss_pred cceeeecCCCceEEEEccCCCCC--cceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..|+||+.||+|++||+..+... .......+.+|...|..++ + +|++.+|++|+.|++|++||+.+++.+..+.
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~--~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 115 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--L--SQENCFAISSSWDKTLRLWDLRTGTTYKRFV 115 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE--E--CSSTTEEEEEETTSEEEEEETTSSCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEE--E--CCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 56899999999999999764211 1234567888998855554 4 6788899999999999999999998888776
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEE
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV 170 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~ 170 (430)
+| ...+.++.+.+.. ..+++++.++.+++|++... ...... ..|...|.+++|
T Consensus 116 ~h--------~~~v~~v~~sp~~--------~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 116 GH--------QSEVYSVAFSPDN--------RQILSAGAEREIKLWNILGE---------CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp CC--------CSCEEEEEECSST--------TEEEEEETTSCEEEEESSSC---------EEEECCTTTSCSSCEEEEEE
T ss_pred CC--------CCcEEEEEECCCC--------CEEEEEcCCCEEEEEeccCC---------ceeeeecccCCCceeeeeee
Confidence 54 4578888876644 48999999999999997521 111111 146678999999
Q ss_pred cCCC----------CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154 171 DISE----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 171 ~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
+|++ .+|++++.|+.|++||. .......+..|. ..|.+++| +|++.+|++|+.|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~---------~~v~~~~~--s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE---------SNVNHLSI--SPNGKYIATGGKDKKLL 238 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTCEEE
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc---------ccceEEEE--CCCCCEEEEEcCCCeEE
Confidence 9976 79999999999999994 456666666654 67999999 89999999999999999
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe--eee-----------CCCCCCeEEE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFI-----------GKCSGSIRSI 307 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~-----------~~~~~~v~~i 307 (430)
+||+.....+...+. +...|.+++|+|++.+++++ .|+.|++||+.+++... .+. +| ...|.++
T Consensus 239 iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 315 (343)
T 2xzm_R 239 IWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSL 315 (343)
T ss_dssp EEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEE
T ss_pred EEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEE
Confidence 999965444455543 45679999999999887655 57889999998776533 333 45 7789999
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~ 334 (430)
+|+|++++|++|+.||.|++|++.++.
T Consensus 316 ~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 316 AWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EECCCCCeEEEecCCceEEEEEEEccC
Confidence 999999999999999999999987653
No 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.5e-36 Score=284.74 Aligned_cols=317 Identities=9% Similarity=0.113 Sum_probs=252.8
Q ss_pred CCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
...+..+++|+.||+|++||+.++ +.+..+.+|...+..+++ .|++ +|++|+.||+|++||+.+++.+..
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~h~~~V~~l~~----~~~~-~l~s~s~dg~i~vwd~~~~~~~~~ 198 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKY----AHGG-ILVSGSTDRTVRVWDIKKGCCTHV 198 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEE----CSTT-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred EECCCEEEEEcCCCcEEEEECCCC-----cEEEEEeCCCcCEEEEEE----cCCC-EEEEEeCCCCEEEEECCCCcEEEE
Confidence 334568999999999999999998 788889999999665555 4455 899999999999999999988777
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccC--------------CCc-ceE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES--------------SCS-TVK 155 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~--------------~~~-~i~ 155 (430)
+.+ +...+.++.+.+... ...+++++.++.+.+|++......... ... .+.
T Consensus 199 ~~~--------h~~~v~~l~~~~~~~------~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 199 FEG--------HNSTVRCLDIVEYKN------IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp ECC--------CSSCEEEEEEEESSS------CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred ECC--------CCCccEEEEEecCCC------CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 664 345888888775322 148999999999999998754321000 000 122
Q ss_pred EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154 156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 235 (430)
.. ..|...+.++ ++++++|++++.|+.|++||+.+++.+..+..+. ..|.+++| +|++.+|++|+.
T Consensus 265 ~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~sg~~ 330 (464)
T 3v7d_B 265 VL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---------DRIYSTIY--DHERKRCISASM 330 (464)
T ss_dssp EE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--ETTTTEEEEEET
T ss_pred Ec-cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCEEEEEE--cCCCCEEEEEeC
Confidence 22 2455666665 5678999999999999999999999998887765 77999999 889999999999
Q ss_pred CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe
Q 014154 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 315 (430)
|+.|++||+++++ ++..+.+|...|.+++|+ +.+|++++.||.|++||++++.....+.. ...+..++|+|++.+
T Consensus 331 dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 331 DTTIRIWDLENGE-LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNI 405 (464)
T ss_dssp TSCEEEEETTTTE-EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSE
T ss_pred CCcEEEEECCCCc-EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCE
Confidence 9999999999865 588899999999999998 46999999999999999999887666643 667888999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecC
Q 014154 316 IASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN 373 (430)
Q Consensus 316 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~ 373 (430)
|++++ ||.|++||+.+++.+..+ +.++ ...|++++|+++..+++++.|+.+.+|-
T Consensus 406 l~~~~-dg~i~iwd~~~g~~~~~~-~~~~-~~~v~~v~~~~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLRSGKLVHAN-ILKD-ADQIWSVNFKGKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEE-TTEEEEEETTTCCEEESC-TTTT-CSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEec-CCeEEEEECCCCcEEehh-hccC-CCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence 99998 899999999999998763 3445 5668999997433336666777666553
No 38
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-36 Score=274.42 Aligned_cols=300 Identities=13% Similarity=0.151 Sum_probs=245.7
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
.....+.+|...|..+ .+ +|+|++|++|+.||.|++||+.+++.+..+.. +...+.++.+.+..
T Consensus 23 ~~~~~l~~h~~~v~~~--~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~~~~~~~~---- 86 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQV--KY--NKEGDLLFSCSKDSSASVWYSLNGERLGTLDG--------HTGTIWSIDVDCFT---- 86 (369)
T ss_dssp EEEEEEECCSSCEEEE--EE--CTTSCEEEEEESSSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTS----
T ss_pred cccEEEEEeeceEEEE--EE--cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh--------cCCcEEEEEEcCCC----
Confidence 4445678899885554 45 67888999999999999999999988887765 34578888776543
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKC 194 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~ 194 (430)
..+++++.++.+.+|++.... .+..+. +...+.+++|+|++++|++++.+ +.|++||+...
T Consensus 87 ----~~l~s~~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 87 ----KYCVTGSADYSIKLWDVSNGQ--------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ----SEEEEEETTTEEEEEETTTCC--------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred ----CEEEEEeCCCeEEEEECCCCc--------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 489999999999999976332 444444 67899999999999999999999 99999999764
Q ss_pred eeeEeeCCCCCCCC--CCcC--CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC
Q 014154 195 EKIWTAKPPPKNSL--GIFT--PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS 270 (430)
Q Consensus 195 ~~~~~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~ 270 (430)
.....+........ ...+ ...+.+++| +|++.+|++++.||.|++||+++...++..+..|...|.+++|+|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGW--STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEE--CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred ccceeecccccceeeeccCCcCccceeEEEE--cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 32211111000000 0001 137999999 88999999999999999999998555688889999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC--------------cEEEEECCCCcee
Q 014154 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--------------YLRFWDIKTRQLL 336 (430)
Q Consensus 271 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~~ 336 (430)
++|++++.|+.|++||+++++.+..+.. ...+..++|+|++.++++++.++ .+++||+.+++.+
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9999999999999999999999988884 67899999999999999999988 8999999999998
Q ss_pred eEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 337 SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.. +.+| ...|.+++|+|++.+ ++++.||.|++|+...
T Consensus 309 ~~--~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 309 GR--VQGH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EE--EECC-SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred hh--eecc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 87 5677 456799999999998 8999999999999865
No 39
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.7e-37 Score=299.75 Aligned_cols=329 Identities=12% Similarity=0.116 Sum_probs=243.8
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCC---CcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCccccee
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
.+++++.||.|++||+..+ +.+..+.+|.. .+ .++.+ +|+ +++|++++.||.|++||+.+++.+..+
T Consensus 175 ~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPF-----KFSASDRTHHKQGSFV--RDVEF--SPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEEEEETTTEEEEEETTTB-----EEEEEECSSSCTTCCE--EEEEE--CSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred EEEEEeCCCcEEEEeCCCc-----ceeeeecccCCCCceE--EEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 6999999999999999987 78888888887 64 45555 678 889999999999999999999887776
Q ss_pred -eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-------------------------
Q 014154 92 -SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------- 145 (430)
Q Consensus 92 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~------------------------- 145 (430)
.. ...+...+.++.+. .. ..+++++.++.+.+|++.....
T Consensus 246 ~~~-----~~~~~~~v~~~~~~--~~-------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (615)
T 1pgu_A 246 EDD-----QEPVQGGIFALSWL--DS-------QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311 (615)
T ss_dssp CBT-----TBCCCSCEEEEEES--SS-------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred ccc-----ccccCCceEEEEEc--CC-------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence 30 00233456655555 22 3666666677777776532110
Q ss_pred -cccCCCcceEEeeec-------------------------------------------CCCceEEEEEcCCCCEEEEEe
Q 014154 146 -SAESSCSTVKSWNVC-------------------------------------------ASGTIAFSKVDISEKFSLFGG 181 (430)
Q Consensus 146 -~~~~~~~~i~~~~~~-------------------------------------------~~~~i~~~~~~~~~~~l~~~~ 181 (430)
++++.++.+++|+.. |...|.+++| +++..|++++
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~ 390 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS 390 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe
Confidence 223344555555432 4445555566 4466777777
Q ss_pred CCCeEEEEECCCCee-----------------------eEeeCCCCCC-CCCCcCCcceeEEEEeecCCCCEEEEEeC-C
Q 014154 182 KGVEVNVWDLDKCEK-----------------------IWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D 236 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~-----------------------~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d 236 (430)
.|+.|++|++.+++. +..+...... ...+.+...+.+++| + +.+|++++. |
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~~~d 466 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL--S--QNYVAVGLEEG 466 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE--C--SSEEEEEETTT
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE--c--CCEEEEeecCC
Confidence 777777777653221 0000000000 000112366888888 4 889999999 9
Q ss_pred CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC-CCCCCeEEEEecC----
Q 014154 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-KCSGSIRSIARHP---- 311 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~---- 311 (430)
+.|++||+..+......+..|...|++++|+|++++|++++.|+.|++||+.+++++..+.+ | ...|++++|+|
T Consensus 467 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~ 545 (615)
T 1pgu_A 467 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAEKG 545 (615)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC--
T ss_pred CeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC-CCceeEEEEcCcccc
Confidence 99999999974421156677889999999999999999999999999999999999999888 6 89999999999
Q ss_pred ------CCCeEEEEeCCCcEEEEECCCC-ceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 312 ------TLPIIASCGLDSYLRFWDIKTR-QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 312 ------~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
++++|++++.||.|++||+.++ +++.. +.+| ...|.+++|+|++.+++++.|+.|++|+...
T Consensus 546 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~h-~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--LNAH-KDGVNNLLWETPSTLVSSGADACIKRWNVVL 614 (615)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEE--TTSS-TTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred ccccccCCCEEEEEcCCCcEEEEECCCCceechh--hhcC-ccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence 9999999999999999999987 66666 6777 5567999999999988899999999998754
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-36 Score=272.93 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=207.3
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeec-C-CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC------
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERW-G-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG------ 85 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~------ 85 (430)
+..|++|+.||+|++|++..+. ......+ . +|...|. ++.| +|++++|++|+.|++|+|||+...
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~---~~~~~~~~~~~h~~~v~--~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~ 96 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDD---FTLIDVLDETAHKKAIR--SVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFE 96 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSC---CEEEEEECTTCCCSCEE--EEEE--CTTSSEEEEEETTSCEEEEEC-------CC
T ss_pred CCEEEEEcCCCEEEEEEecCCC---eEEEEEEecCCccCCEE--EEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcccc
Confidence 3489999999999999998741 1234444 3 3888754 4555 778899999999999999998532
Q ss_pred -cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc
Q 014154 86 -DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (430)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~ 164 (430)
+.+..+. .|...+.++.+.+.. ..+++++.|+.+++|++..... ....+..+. .|...
T Consensus 97 ~~~~~~~~--------~h~~~V~~v~~sp~g--------~~las~s~D~~v~iwd~~~~~~----~~~~~~~~~-~h~~~ 155 (330)
T 2hes_X 97 MDLLAIIE--------GHENEVKGVAWSNDG--------YYLATCSRDKSVWIWETDESGE----EYECISVLQ-EHSQD 155 (330)
T ss_dssp CEEEEEEC------------CEEEEEECTTS--------CEEEEEETTSCEEEEECCTTCC----CCEEEEEEC-CCSSC
T ss_pred ceeEEEEc--------CCCCcEEEEEECCCC--------CEEEEEeCCCEEEEEeccCCCC----CeEEEEEec-cCCCc
Confidence 2223333 345678888876543 4899999999999999842210 111233333 57889
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEE
Q 014154 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVR 240 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~ 240 (430)
|.+++|+|++.+|++++.|++|++||+.++ +++..+..|. ..|.+++| +|+ +.+|++|+.|++|+
T Consensus 156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE---------GTVWSSDF--DKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CCSSSSCEEEEEETTSCEE
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC---------CcEEEEEe--cCCCCeeEEEEEeCCCeEE
Confidence 999999999999999999999999998766 5667777765 77999999 666 67999999999999
Q ss_pred EEECCCCC-------cceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--EEee-eeCCCCC-CeEEEE
Q 014154 241 LYDTSAQR-------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGC-FIGKCSG-SIRSIA 308 (430)
Q Consensus 241 iwd~~~~~-------~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~~~~-~~~~~~~-~v~~i~ 308 (430)
+||+..+. .....+.. |...|.+++|++++ +|++++.||.|++||..+++ .+.. +.+| .. .|.+++
T Consensus 225 iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~ 302 (330)
T 2hes_X 225 VWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVK 302 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEE
T ss_pred EEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEE
Confidence 99987531 12334444 88899999999765 89999999999999998874 3333 3566 55 899999
Q ss_pred ecC--CCCeEEEEeCCCcEEEEECCC
Q 014154 309 RHP--TLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 309 ~~~--~~~~l~s~~~dg~i~iwd~~~ 332 (430)
|+| ++.+|++|+.||.|+|||+++
T Consensus 303 ~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 303 WLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EC-----CCEEEEETTSEEEEEEC--
T ss_pred EecCCCceEEEEecCCCcEEEEEecc
Confidence 999 689999999999999999864
No 41
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-36 Score=281.83 Aligned_cols=293 Identities=14% Similarity=0.127 Sum_probs=233.0
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
++...+.+|...+.+++ | +|++ ++|++|+.||.|+|||+.+++....+.. ..+...+.++.+.+...
T Consensus 64 ~~~~~~~~h~~~v~~~~--~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~-- 131 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLE--W--HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNT-- 131 (383)
T ss_dssp EEEEEECCCSSCEEEEE--E--CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEE--
T ss_pred ceEEeccCCCCCEEEEE--E--CCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCCCC--
Confidence 56778888998855554 4 5677 7999999999999999998876665542 23556888888876333
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 196 (430)
..+++++.++.+.+|++.. ..+..+... +...|.+++|+|++++|++++.|+.|++||+ +++.
T Consensus 132 -----~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 132 -----NQLFVSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp -----EEEEEEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred -----CEEEEEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 5899999999999999762 244444422 2467999999999999999999999999999 5677
Q ss_pred eEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCC---cceEEEeecCCCeEEEEecC-CCC
Q 014154 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEP-DSF 271 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~sp-~~~ 271 (430)
+..+..+. ..|.+++| +|++. +|++++.|+.|++||+++.. .++..+ .|...|.+++|+| ++.
T Consensus 197 ~~~~~~h~---------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 197 IFKEKLHK---------AKVTHAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp EEEEECSS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred EEEeccCC---------CcEEEEEE--CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC
Confidence 77776654 77999999 88888 99999999999999998732 234444 6899999999999 999
Q ss_pred EEEEEeCCCcEEEEEccCCeEEeeeeCCC----------------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 272 NIYIGNGSGDLASVDIRTGKLLGCFIGKC----------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 272 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
+|++++.|+.|++||+++++.+..+.+|. ...+..++|+|++.+ +++.|+.|++||+.+++.
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 99999999999999999888766666441 134455777777766 778999999999999999
Q ss_pred eeEEEeecc-ccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 336 LSAVFLKQH-LNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ~~~~~~~~~-~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+..+ .++ ....+..++|+|++.+ +++ .|+.|++|+...
T Consensus 343 ~~~l--~~~~~~~~~~~~~~s~~g~~l~s~-sd~~i~iw~~~~ 382 (383)
T 3ei3_B 343 VHQL--RDPNAAGIISLNKFSPTGDVLASG-MGFNILIWNRED 382 (383)
T ss_dssp EEEE--CBTTBCSCCCEEEECTTSSEEEEE-ETTEEEEEECC-
T ss_pred eeee--cCCCCCceEEEEEEecCccEEEEe-cCCcEEEEecCC
Confidence 8884 443 2556677899999999 555 599999999864
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7e-36 Score=268.25 Aligned_cols=271 Identities=15% Similarity=0.150 Sum_probs=226.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|++|++..+ +....+.+|...+. ++.| +|++++|++|+.||.|++||+.+++.+..+..+
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~h~~~v~--~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 106 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGIS--DVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106 (312)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEE--EEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEeeCCCeEEEEeCCCc-----ccchhhccCCCceE--EEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence 46889999999999999887 67778888988854 5555 778899999999999999999999888877654
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+.++.+.+.. ..+++++.++.+.+|++.... .+..+. .|...|.+++|+|++
T Consensus 107 --------~~~v~~~~~~~~~--------~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~ 161 (312)
T 4ery_A 107 --------SNYVFCCNFNPQS--------NLIVSGSFDESVRIWDVKTGK--------CLKTLP-AHSDPVSAVHFNRDG 161 (312)
T ss_dssp --------SSCEEEEEECSSS--------SEEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred --------CCCEEEEEEcCCC--------CEEEEEeCCCcEEEEECCCCE--------EEEEec-CCCCcEEEEEEcCCC
Confidence 3467777765543 489999999999999975332 344443 567889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
++|++++.|+.|++||+.+++.+..+.... ...+..++| +|++.+|++++.|+.|++||+++++ .+..+
T Consensus 162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~ 230 (312)
T 4ery_A 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKF--SPNGKYILAATLDNTLKLWDYSKGK-CLKTY 230 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSS--------CCCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTE-EEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeEEeccC--------CCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEE
Confidence 999999999999999999988877664332 256888999 8999999999999999999999865 47778
Q ss_pred eecCCCeE---EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEE
Q 014154 255 DFRETPIK---AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWD 329 (430)
Q Consensus 255 ~~~~~~i~---~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd 329 (430)
.+|...+. .....+++.+|++|+.||.|++||+++++.+..+.+| ...|.+++|+|++.+|++++ .|+.|++|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-CCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 87765433 2233467889999999999999999999999999998 89999999999999999997 699999998
Q ss_pred CC
Q 014154 330 IK 331 (430)
Q Consensus 330 ~~ 331 (430)
..
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 43
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.9e-36 Score=279.18 Aligned_cols=307 Identities=14% Similarity=0.160 Sum_probs=239.7
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc------ccceeeccCCCCCCCCCCceEEEEEee
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFK 113 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~ 113 (430)
.....+.+|...|.++++ +| ++|++|+.||.|++||+.+++ .+..+.. +...+.++.+.+
T Consensus 7 ~~~~~~~~h~~~i~~~~~----~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~ 72 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSA----CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV--------HKSGLHHVDVLQ 72 (397)
T ss_dssp EEEEESSCSSSCEEEEEE----CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC--------CTTCEEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEe----cC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec--------CCCcEEEEEEec
Confidence 455678889998665555 34 689999999999999998877 4444443 456888888877
Q ss_pred c----CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-----CCceEEEEEc----CCCCE-EEE
Q 014154 114 R----QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----SGTIAFSKVD----ISEKF-SLF 179 (430)
Q Consensus 114 ~----~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-----~~~i~~~~~~----~~~~~-l~~ 179 (430)
. .... ..+++++.++.+.+|++...... ....+..+. .+ ...|.+++|+ |++++ |++
T Consensus 73 ~~~~~g~~~-----~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 143 (397)
T 1sq9_A 73 AIERDAFEL-----CLVATTSFSGDLLFYRITREDET---KKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVA 143 (397)
T ss_dssp EEETTTEEE-----EEEEEEETTSCEEEEEEEECTTT---CCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEE
T ss_pred ccccCCccc-----cEEEEEcCCCCEEEEEccCCccc---ccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEE
Confidence 6 3000 28899999999999998754310 000044443 34 4889999999 99999 999
Q ss_pred EeCCCeEEEEECCC------CeeeE-----eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 180 GGKGVEVNVWDLDK------CEKIW-----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 180 ~~~d~~i~~~d~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
++.||.|++||+.+ ++.+. .+... ......+...|.+++| +|++ +|++++.|+.|++||+++++
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT--VESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE--ECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTE
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeee--eccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCCc
Confidence 99999999999987 55443 33210 0000112367999999 8899 99999999999999999854
Q ss_pred cceEEEee---c---CCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeC-------------CCCCCeEE
Q 014154 249 RPVMSFDF---R---ETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIG-------------KCSGSIRS 306 (430)
Q Consensus 249 ~~~~~~~~---~---~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~~v~~ 306 (430)
++..+.. | ...|.+++|+|++++|++++.| +.|++||+++++.+..+.+ | ...|.+
T Consensus 219 -~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~ 296 (397)
T 1sq9_A 219 -PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMS 296 (397)
T ss_dssp -EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEE
T ss_pred -eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEE
Confidence 5788888 8 8999999999999999999999 9999999999999999988 7 899999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee----cc--------------ccceEEeeeccccc----------
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK----QH--------------LNEVVFDSAFADKE---------- 358 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~--------------~~~~v~~~~~s~~g---------- 358 (430)
++|+|++.+|++++.||.|++||+.+++.+..+... +| ....|.+++|+|+|
T Consensus 297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 999999999999999999999999999998885311 33 04557999999998
Q ss_pred cc-cccCCCCceEecCCCC
Q 014154 359 VA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 359 ~~-~~~~~d~~i~~~~~~~ 376 (430)
.+ ++++.|+.|++|+...
T Consensus 377 ~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC
T ss_pred ceEEEecCCCcEEEEEcCC
Confidence 45 8999999999998754
No 44
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=307.48 Aligned_cols=152 Identities=12% Similarity=0.151 Sum_probs=126.9
Q ss_pred EEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---eEEEe-------ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI 287 (430)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~ 287 (430)
.++| +|++++|++|+.|++|++||+.++... ..... +|...|.+++|+|++++|++|+.||+|+|||+
T Consensus 440 sv~~--spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 440 QKLP--AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp CCCC--CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cccc--cccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence 3444 678999999999999999999875321 12221 78889999999999999999999999999999
Q ss_pred cCC---------------------------------------------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154 288 RTG---------------------------------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 288 ~~~---------------------------------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 322 (430)
.++ +++..+.+| .+.|++++|+|+| +||+|+.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D 595 (902)
T 2oaj_A 518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-KGKTSAINNSNIG-FVGIAYAA 595 (902)
T ss_dssp EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC-SCSEEEEEECBTS-EEEEEETT
T ss_pred cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC-CCcEEEEEecCCc-EEEEEeCC
Confidence 866 346778887 8999999999999 99999999
Q ss_pred CcEEEEECCCCceeeEEEe---e-ccccceEEeeecc-----ccc---cc-cccCCCCceEecCC
Q 014154 323 SYLRFWDIKTRQLLSAVFL---K-QHLNEVVFDSAFA-----DKE---VA-NAAADAPMLEIQNG 374 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~~---~-~~~~~~v~~~~~s-----~~g---~~-~~~~~d~~i~~~~~ 374 (430)
++|+|||++++..+....+ . +| ...|++++|+ ||| .+ ++++.|++|++|+.
T Consensus 596 ~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 596 GSLMLIDRRGPAIIYMENIREISGAQ-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp SEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CcEEEEECCCCeEEEEeehhHhcccc-ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9999999988877653222 2 66 5568999999 885 56 99999999999998
No 45
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.4e-36 Score=279.53 Aligned_cols=302 Identities=10% Similarity=0.031 Sum_probs=235.8
Q ss_pred cCCCCCCCcceeeecCCCceEEEEccCCCC-CcceeeeecCCCCCCcceeeeeecCCCCC---ceeEEeecCCeEEEecC
Q 014154 7 LECPGCPPLRALTFDSLGLIKVIEARGEHG-GVPKVVERWGDPHSSNCVLAASIDDSQND---PLLAVARKNGLTDILNP 82 (430)
Q Consensus 7 ~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~g---~~l~~g~~dg~i~iwd~ 82 (430)
+.+....+..+++|+.||.|++|++..+.. ...+.+..+.+|...+..++++.+..++| ++|++++.||.|++||+
T Consensus 19 i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~ 98 (397)
T 1sq9_A 19 IFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI 98 (397)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEE
T ss_pred eEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEc
Confidence 333444447899999999999999998610 11125667778988866666655312237 89999999999999999
Q ss_pred CCCcc-----cceeeccCCCCCCCC--CCceEEEEEe----ecCcccccccCce-EEEEccCCeeEEEEeee------cC
Q 014154 83 LNGDL-----RVAISNAGDSGAQPE--DDGIVGLHLF----KRQREESSSRSRT-LLTCTTKGKASMRSIEV------TK 144 (430)
Q Consensus 83 ~~~~~-----~~~~~~~~~~~~~~~--~~~i~~~~~~----~~~~~~~~~~~~~-~~~~~~~g~~~v~~~~~------~~ 144 (430)
.+++. +..+..+. .+ ...+.++.+. +.. .. +++++.++.+.+|++.. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~--------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 99 TREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGASNDRLL--------SHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EECTTTCCEEEEEECCSC-----TTGGGSCEEEEEEECCC------------CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred cCCcccccccceeecccc-----cccCCCcEEEEEEeeccCCCC--------ceEEEEEeCCCcEEEEeCCccccccccc
Confidence 88876 55554431 01 3578888887 433 37 89999999999999986 32
Q ss_pred ccccCCCcceEEee------ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC---CCCCCCCCcCCcc
Q 014154 145 VSAESSCSTVKSWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP---PPKNSLGIFTPTW 215 (430)
Q Consensus 145 ~~~~~~~~~i~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~ 215 (430)
..... ....+. ..+...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. |.. ....
T Consensus 166 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~------~~~~ 235 (397)
T 1sq9_A 166 TLNWS---PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN------NSNS 235 (397)
T ss_dssp TTCCC---CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C------CCCC
T ss_pred eeecc---CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc------cCCc
Confidence 11100 000222 3467889999999999 999999999999999999998888776 400 0167
Q ss_pred eeEEEEeecCCCCEEEEEeCC---CcEEEEECCCCCcceEEEee-------------cCCCeEEEEecCCCCEEEEEeCC
Q 014154 216 FTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d 279 (430)
|.+++| +|++.+|++++.| +.|++||+++++ ++..+.. |...|.+++|+|++++|++++.|
T Consensus 236 i~~i~~--~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 236 IRSVKF--SPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp EEEEEE--CSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred cceEEE--CCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 999999 8999999999999 999999999865 5788888 99999999999999999999999
Q ss_pred CcEEEEEccCCeEEeeee------CC--------------CCCCeEEEEecCCC----------CeEEEEeCCCcEEEEE
Q 014154 280 GDLASVDIRTGKLLGCFI------GK--------------CSGSIRSIARHPTL----------PIIASCGLDSYLRFWD 329 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~i~~~~~~----------~~l~s~~~dg~i~iwd 329 (430)
+.|++||+++++++..+. +| |...|++++|+|++ .+|++++.||.|++|+
T Consensus 313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999999999999998 54 26899999999998 7999999999999999
Q ss_pred CCCCc
Q 014154 330 IKTRQ 334 (430)
Q Consensus 330 ~~~~~ 334 (430)
+.+|+
T Consensus 393 ~~~g~ 397 (397)
T 1sq9_A 393 EAGGK 397 (397)
T ss_dssp EEC--
T ss_pred cCCCC
Confidence 98763
No 46
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.8e-37 Score=283.03 Aligned_cols=291 Identities=9% Similarity=0.012 Sum_probs=212.8
Q ss_pred CCcceeeeeecCCCCCceeEEeecC-------CeEEEecCCCCcccc--eeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 50 SSNCVLAASIDDSQNDPLLAVARKN-------GLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 50 ~~~~~~~~~~~~~p~g~~l~~g~~d-------g~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
-+|++++| +|||++|++|+.+ +.|++|++..+.... .+..+....+.++.+.+.++.+-.
T Consensus 15 ~PV~sv~f----s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~------- 83 (365)
T 4h5i_A 15 YPAYGAKF----LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK------- 83 (365)
T ss_dssp SCEEEEEE----EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET-------
T ss_pred CCEEEEEE----eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC-------
Confidence 35555554 6688899998753 359999987554321 222222223444555665554321
Q ss_pred ccCceEEEE-----------ccCCeeEEEEeeecCccccCCCcceEEeee-------cCCCceEEEEEcCCCCEEEEEe-
Q 014154 121 SRSRTLLTC-----------TTKGKASMRSIEVTKVSAESSCSTVKSWNV-------CASGTIAFSKVDISEKFSLFGG- 181 (430)
Q Consensus 121 ~~~~~~~~~-----------~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-------~~~~~i~~~~~~~~~~~l~~~~- 181 (430)
..++++ ..++.+++|.+..... .+..+.. .+...+.+++|+|+|+++++++
T Consensus 84 ---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~ 153 (365)
T 4h5i_A 84 ---GIILVGCNENSTKITQGKGNKHLRKFKYDKVND-------QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS 153 (365)
T ss_dssp ---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-------EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred ---CEEEEEECCCccEEEEecCCCcEEEEEecCCCc-------eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence 234433 3455667776543221 2222111 1224578999999999987554
Q ss_pred -CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce-EEEeecCC
Q 014154 182 -KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRET 259 (430)
Q Consensus 182 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 259 (430)
.|++|++||+++++.+..+..+ ..|.+++| +|++++|++++.+ .+.+|+..++.... .....|..
T Consensus 154 ~~d~~i~iwd~~~~~~~~~~~~~----------~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 154 KVPAIMRIIDPSDLTEKFEIETR----------GEVKDLHF--STDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp CSSCEEEEEETTTTEEEEEEECS----------SCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred CCCCEEEEeECCCCcEEEEeCCC----------CceEEEEE--ccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence 6899999999999998877532 56999999 8999999998854 56677766655432 23456788
Q ss_pred CeEEEEecCCCCEEEEEeCCC----cEEEEEccCCeE----EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 260 PIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.|.+++|+|+++++++++.|+ .+++||+..... ...+.+| ...|++++|+|+|++||+|+.|++|+|||++
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 899999999999999999887 688999887654 3456777 8899999999999999999999999999999
Q ss_pred CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+++++..+ +.+| ...|++++|+|||++ ++++.|++|+||+.+..
T Consensus 300 ~~~~~~~~-~~gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 300 DLSMSKIF-KQAH-SFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTEEEEEE-TTSS-SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCcEEEEe-cCcc-cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99998875 5788 556799999999998 99999999999998753
No 47
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-36 Score=320.06 Aligned_cols=330 Identities=14% Similarity=0.246 Sum_probs=252.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||+|++||+.++ +.+..+.+|...+.+ +.| +|+|++|++|+.||.|+|||+.+++.+..+..+
T Consensus 628 ~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~h~~~v~~--~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 698 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLC--CAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698 (1249)
T ss_dssp SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCC-----CEEEEeccCCCCEEE--EEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 46889999999999999997 778888999998554 444 678889999999999999999999988887763
Q ss_pred CCCCCCCCCCceEEEEEeec--------------------Ccccc----------------cccCceEEEEccCCeeEEE
Q 014154 95 GDSGAQPEDDGIVGLHLFKR--------------------QREES----------------SSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~--------------------~~~~~----------------~~~~~~~~~~~~~g~~~v~ 138 (430)
. ..+.++.+.+. ..... ...+..+++++.+|.+.+|
T Consensus 699 ~--------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw 770 (1249)
T 3sfz_A 699 S--------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770 (1249)
T ss_dssp S--------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred C--------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence 2 23333333322 11000 0011244445555555555
Q ss_pred EeeecCc-----------------------------------cccCCCcceEEeee-----------cCCCceEEEEEcC
Q 014154 139 SIEVTKV-----------------------------------SAESSCSTVKSWNV-----------CASGTIAFSKVDI 172 (430)
Q Consensus 139 ~~~~~~~-----------------------------------~~~~~~~~i~~~~~-----------~~~~~i~~~~~~~ 172 (430)
++..... .....++.+.+|+. .+...|.+++|+|
T Consensus 771 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp EGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred eCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC
Confidence 4321100 00011233444433 2345678899999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc---
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--- 249 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--- 249 (430)
++.++++++.++.|++||+.++..+..+..|. ..|.+++| +|++.+|++++.|+.|++||+.....
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~s~s~dg~v~vw~~~~~~~~~~ 919 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHL---------SWVHGVMF--SPDGSSFLTASDDQTIRVWETKKVCKNSA 919 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEHHHHHSCCS
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeeecCCCc---------cceEEEEE--CCCCCEEEEEeCCCeEEEEEccccceeee
Confidence 99999999999999999999999988888765 78999999 89999999999999999999653100
Q ss_pred -------------------------ceEE--------EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154 250 -------------------------PVMS--------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 250 -------------------------~~~~--------~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 296 (430)
.... ...+...+.+++|+|+++++++|+.+|.|++||+.+++.+..+
T Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~ 999 (1249)
T 3sfz_A 920 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999 (1249)
T ss_dssp SSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC
T ss_pred ecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec
Confidence 0011 1123467999999999999999999999999999999999999
Q ss_pred eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
.+| ...|++++|+|++++|++++.||.|++||+.+++... ..+| ...+.+++|+|++.+++++.|+.|++|+...
T Consensus 1000 ~~h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---~~~~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1000 VGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---LQAH-QETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp CCC-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC---CBCC-SSCEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred ccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE---EecC-CCcEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence 998 8999999999999999999999999999999988765 3455 4567999999999999999999999999865
Q ss_pred C
Q 014154 377 T 377 (430)
Q Consensus 377 ~ 377 (430)
.
T Consensus 1075 ~ 1075 (1249)
T 3sfz_A 1075 G 1075 (1249)
T ss_dssp T
T ss_pred C
Confidence 4
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-36 Score=283.31 Aligned_cols=274 Identities=14% Similarity=0.134 Sum_probs=225.1
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|+|++|++|+.||.|++||+.+++....+.. ..+..+.++.... ..+++++.++.+.+|++.
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~----------~~~~~~~~~~~~~-------~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR----------ADYTAVDTAKLQM-------RRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECCSEETTTTSCS----------CCEEEEEEECSSS-------CEEEEEETTSCEEEECTT
T ss_pred eecCCeEEEEEcCCcEEEEEecccceeeEEec----------CCceEEEEEecCC-------CEEEEEECCCCEEEEeCC
Confidence 67888999999999999999988776655543 2555566666554 689999999999999865
Q ss_pred ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (430)
... .+..+ ..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|. ..|.+++|
T Consensus 128 ~~~--------~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~---------~~v~~~~~ 189 (420)
T 3vl1_A 128 FNL--------QREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR---------ATVTDIAI 189 (420)
T ss_dssp SCE--------EEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS---------SCEEEEEE
T ss_pred Ccc--------eeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC---------CcEEEEEE
Confidence 321 22222 3678999999999999999999999999999999998888877654 77999999
Q ss_pred eecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec---C---------------------CCeEEEEecCCCCEEEEEe
Q 014154 222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR---E---------------------TPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~---------------------~~i~~~~~sp~~~~l~~~~ 277 (430)
+|++.+|++++.|+.|++||+++++ .+..+..| . ..+.+++|+|++++|++|+
T Consensus 190 --~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 190 --IDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp --ETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred --cCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 8899999999999999999999865 46666642 3 3444555688999999999
Q ss_pred CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCce-eeEEEeeccccceEEeeecc
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s 355 (430)
.||.|++||+++++.+..+...|...|.+++|+|++. +|++++.||.|++||+++++. +.. +.+|....+.++.|.
T Consensus 267 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE--FLINEGTPINNVYFA 344 (420)
T ss_dssp TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--EEESTTSCEEEEEEE
T ss_pred CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh--hhccCCCCceEEEeC
Confidence 9999999999999988887764488999999999998 999999999999999998755 555 445446677888665
Q ss_pred ccccc-cccCCCCceEecCCCC
Q 014154 356 DKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 356 ~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
++.+ ++++.|+.|++|+...
T Consensus 345 -~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 345 -AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -TTEEEEEETTTEEEEEEEECC
T ss_pred -CCCEEEEecCCccEEEEeccC
Confidence 5655 9999999999999766
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-35 Score=295.73 Aligned_cols=296 Identities=10% Similarity=0.141 Sum_probs=233.1
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc-----cceeeccCCCCCCCCCCceEEEEEeec
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKR 114 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (430)
++...+.+|.+.|.+++++.+ ++++|++|+.||+|+||++.+... ...+. .|...+.++.+.+.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--------GHSHFVEDVVLSSD 441 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--------CCSSCEEEEEECTT
T ss_pred chhhhcccCCceeEEEEecCC---CCCEEEEEeCCCcEEEEEccCCCcccccccceec--------CCCCcEEEEEECCC
Confidence 344567889999777766542 346899999999999999976432 22333 34567887777654
Q ss_pred CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC 194 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 194 (430)
. ..+++++.|+.++||++.... .++.+. .|...|.+++|+|++++|++++.|++|++||+...
T Consensus 442 g--------~~l~sgs~Dg~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 442 G--------QFALSGSWDGELRLWDLAAGV--------STRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp S--------SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred C--------CEEEEEeCCCcEEEEECCCCc--------ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence 4 489999999999999975332 344443 68899999999999999999999999999998654
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC--CEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN 272 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 272 (430)
......... ..|...|.+++| +|++ ..|++++.|+.|++||+++.+ ....+.+|...|++++|+|++++
T Consensus 505 ~~~~~~~~~------~~h~~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 505 CKYTISEGG------EGHRDWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp EEEEECSST------TSCSSCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSE
T ss_pred cceeeccCC------CCCCCcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCE
Confidence 433222211 123478999999 6665 689999999999999999855 57888999999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc--------
Q 014154 273 IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH-------- 344 (430)
Q Consensus 273 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------- 344 (430)
|++|+.|+.|++||+++++.+..+.. ...|.+++|+|++.+|++++ |+.|+|||+++++.+..+.....
T Consensus 576 l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 576 CASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp EEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------
T ss_pred EEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc
Confidence 99999999999999999999888876 46899999999998887765 56699999999988876421100
Q ss_pred --------ccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 345 --------LNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 345 --------~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
....+++++|+|+|++ ++++.||.|++|+..
T Consensus 653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 0012678999999999 999999999999874
No 50
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.3e-35 Score=266.90 Aligned_cols=277 Identities=11% Similarity=0.111 Sum_probs=219.6
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|+||+.||+|+|||+.............+.+|...|.. +.| +|+|++|++|+.|+.|++|+.............
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~--~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 127 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD--VVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEE--EEE--CCCCCEEEEEcccccceEEeecccceeeeecCC
Confidence 4688999999999999987643334456778899988554 445 678999999999999999999877665554432
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
...+....+ .... ..+++++.++.+.+|++.... ........+...+..++|+++
T Consensus 128 --------~~~~~~~~~-~~~~-------~~l~s~s~d~~~~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 128 --------TKDVLSVAF-SSDN-------RQIVSGSRDKTIKLWNTLGVC--------KYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp --------SSCEEEEEE-CTTS-------SCEEEEETTSCEEEECTTSCE--------EEEECSSSCSSCEEEEEECSCS
T ss_pred --------CCceeEEEE-eecC-------ccceeecCCCeEEEEEeCCCc--------eEEEEeccccCcccceEEccCC
Confidence 123433333 3332 589999999999999864321 222333456788999999875
Q ss_pred -CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 174 -EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 174 -~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
..++++++.|+.|++||+.+++.+..+..+. ..|++++| +|++++|++|+.|+.|++||+++.. ++.
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~---------~~v~~~~~--s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~ 251 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT---------GYLNTVTV--SPDGSLCASGGKDGQAMLWDLNEGK-HLY 251 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE-EEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCC---------CcEEEEEE--CCCCCEEEEEeCCCeEEEEEeccCc-eee
Confidence 4678899999999999999999998888765 77999999 8999999999999999999999855 466
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee---------CCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
.+..+ ..|.++.|+|++.+ ++++.|+.|++||++++..+..+. +| ...|++++|+|++++|++|+.||
T Consensus 252 ~~~~~-~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg 328 (340)
T 4aow_A 252 TLDGG-DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDN 328 (340)
T ss_dssp EEECS-SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTS
T ss_pred eecCC-ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCC
Confidence 66654 68999999998754 556679999999999988776654 34 78999999999999999999999
Q ss_pred cEEEEECCCCc
Q 014154 324 YLRFWDIKTRQ 334 (430)
Q Consensus 324 ~i~iwd~~~~~ 334 (430)
.|+|||+++|.
T Consensus 329 ~v~iW~~~tGt 339 (340)
T 4aow_A 329 LVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEeCCCcC
Confidence 99999999875
No 51
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-35 Score=262.65 Aligned_cols=288 Identities=13% Similarity=0.189 Sum_probs=239.7
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
++...+.+|...|.++++ . ++++|++|+.||.|++||+.+++....+..+ ...+.++.+.+..
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~--------~~~v~~~~~~~~~---- 71 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDDQWLGTVVYTG--------QGFLNSVCYDSEK---- 71 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESSSEEEEEEEEC--------SSCEEEEEEETTT----
T ss_pred HHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCCCEEEEEeecC--------CccEEEEEECCCC----
Confidence 677889999999777666 3 5678999999999999999888777766653 3578878776644
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 199 (430)
..+++++.++.+.+|++..... ...+..+. .|...|.+++| ++++|++++.|+.|++|| .+.....
T Consensus 72 ----~~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 72 ----ELLLFGGKDTMINGVPLFATSG-----EDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp ----TEEEEEETTSCEEEEETTCCTT-----SCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred ----CEEEEecCCCeEEEEEeeecCC-----CCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 4899999999999999864321 12333333 57789999999 578999999999999999 5666666
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeC
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG 278 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~ 278 (430)
+..+. ..+.++.|. ++++.+|++++.|+.|++||.. .....+.. |...+.+++|+|++. +++++.
T Consensus 138 ~~~~~---------~~v~~~~~~-~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 138 LQAHN---------ASVWDAKVV-SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp EECCS---------SCEEEEEEE-ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred cccCC---------CceeEEEEc-cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence 66654 678999995 3488999999999999999943 34666776 889999999999998 999999
Q ss_pred CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
|+.|++||+++++++..+.+| ...|++++|+|++ .|++++.||.|++||+.+++.+.. +..| ...+.+++|+|++
T Consensus 204 dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~--~~~~-~~~i~~~~~~~~~ 278 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV--ITLP-AISIWSVDCMSNG 278 (313)
T ss_dssp TSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE--EECS-SSCEEEEEECTTS
T ss_pred CCeEEEEECCchhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE--Eecc-CceEEEEEEccCC
Confidence 999999999999999999998 8999999999999 689999999999999999999887 4556 4457999999999
Q ss_pred cccccCCCCceEecCCCCC
Q 014154 359 VANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 359 ~~~~~~~d~~i~~~~~~~~ 377 (430)
.+++++.|+.|++|+....
T Consensus 279 ~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 279 DIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CEEEEETTSCEEEEESCGG
T ss_pred CEEEEeCCCcEEEEeCCCC
Confidence 9988999999999998763
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.6e-36 Score=321.01 Aligned_cols=337 Identities=16% Similarity=0.184 Sum_probs=267.6
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
...+++|+.||.|++||+..+ +.+..+.+|...+. ++.+ +|+|++|++|+.||.|++||+.+++....+..
T Consensus 713 ~~~l~sg~~d~~v~vwd~~~~-----~~~~~~~~h~~~v~--~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 713 HLLLATGSNDFFLKLWDLNQK-----ECRNTMFGHTNSVN--HCRF--SPDDELLASCSADGTLRLWDVRSANERKSINV 783 (1249)
T ss_dssp CCEEEEEETTSCEEEEETTSS-----SEEEEECCCSSCEE--EEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred ceEEEEEeCCCeEEEEECCCc-----chhheecCCCCCEE--EEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence 357889999999999999997 77888889998855 4455 67888999999999999999988766555432
Q ss_pred -----------------cCCCCCCCCCCceE-----EEEEeecCcccc-----------------cccCceEEEEccCCe
Q 014154 94 -----------------AGDSGAQPEDDGIV-----GLHLFKRQREES-----------------SSRSRTLLTCTTKGK 134 (430)
Q Consensus 94 -----------------~~~~~~~~~~~~i~-----~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~ 134 (430)
+....+++....+. .+.+|+...... ...+..+++++.++.
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 12222333222221 111221110000 011247788888888
Q ss_pred eEEEEee-------------------ecCc----cccCCCcceEEeeecC------------------------------
Q 014154 135 ASMRSIE-------------------VTKV----SAESSCSTVKSWNVCA------------------------------ 161 (430)
Q Consensus 135 ~~v~~~~-------------------~~~~----~~~~~~~~i~~~~~~~------------------------------ 161 (430)
+.+|++. ++++ ++++.|+.+++|+...
T Consensus 864 v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1249)
T 3sfz_A 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI 943 (1249)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS
T ss_pred EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCC
Confidence 8888753 2222 5667788899998431
Q ss_pred -----------------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154 162 -----------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 162 -----------------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
...+.+++|+|+++++++|+.+|.|++||+.++.....+..|. ..|.+++| +
T Consensus 944 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~---------~~v~~l~~--s 1012 (1249)
T 3sfz_A 944 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK---------KAVRHIQF--T 1012 (1249)
T ss_dssp SSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS---------SCCCCEEE--C
T ss_pred cceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC---------CceEEEEE--C
Confidence 2458899999999999999999999999999988887777654 67999999 8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
|++.+|++++.||.|++||+.++. ...+..|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+.+| ...|
T Consensus 1013 ~dg~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v 1088 (1249)
T 3sfz_A 1013 ADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCH-QGTV 1088 (1249)
T ss_dssp SSSSCEEEECSSSBEEEEETTTTE--EECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECC-SSCC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCc--eEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEccc-CCcE
Confidence 999999999999999999999865 34566788999999999976 6788999999999999999999999998 8999
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
.+++|+|++.+|++++.|+.|++||+.+++.+.. +.+| ...|.+++|+|+|.+ ++++.||.|++|+....
T Consensus 1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~--l~~h-~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--LKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp CCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC--CCCC-SSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCcceeee--eccC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999999999999999999998887 6677 456799999999998 99999999999998754
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=285.30 Aligned_cols=310 Identities=14% Similarity=0.163 Sum_probs=237.1
Q ss_pred EEEccCCCCCcceeeeec-CCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCC---CcccceeeccCCCCCCCC
Q 014154 28 VIEARGEHGGVPKVVERW-GDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLN---GDLRVAISNAGDSGAQPE 102 (430)
Q Consensus 28 vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~ 102 (430)
.|+... +++..+ .+|...|..+++ +| ++++|++|+.||+|+|||+.+ +........ ..+
T Consensus 47 ~w~~~g------~~~~~~~~~h~~~V~~~~~----s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~h 110 (437)
T 3gre_A 47 MGNLRG------KLIATLMENEPNSITSSAV----SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT------YDC 110 (437)
T ss_dssp GGGCCC------CEEEEECTTTTSCEEEEEE----ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE------EEC
T ss_pred cccccc------eEEeeeccCCCCceEEEEE----CCCCCCEEEEecCCceEEEeECcccccCcccceeee------ccC
Confidence 488665 677778 788888665555 56 778999999999999999876 332211110 024
Q ss_pred CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec---CccccCCCcceEEeeec---CCCceEEEE--EcCCC
Q 014154 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT---KVSAESSCSTVKSWNVC---ASGTIAFSK--VDISE 174 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~~~i~~~~~~---~~~~i~~~~--~~~~~ 174 (430)
...+.++.+.+.. ..+++++.+|.+.+|++... ..........++.+... +...+.++. +++++
T Consensus 111 ~~~v~~~~~~~~~--------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 111 SSTVTQITMIPNF--------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp SSCEEEEEECTTS--------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred CCCEEEEEEeCCC--------CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 5688888887643 48999999999999998632 11000001122222222 456677777 56889
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
.+|++++.|+.|++||+++++.+..+..+. |...|++++| +|++.+|++|+.||.|++||++++. ++..+
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------h~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~ 252 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSP-------RHGAVSSICI--DEECCVLILGTTRGIIDIWDIRFNV-LIRSW 252 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCG-------GGCCEEEEEE--CTTSCEEEEEETTSCEEEEETTTTE-EEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCC-------CCCceEEEEE--CCCCCEEEEEcCCCeEEEEEcCCcc-EEEEE
Confidence 999999999999999999999988887621 2267999999 8999999999999999999999854 56666
Q ss_pred e-ecCCCeEEEEec----CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-------------------------CCCCe
Q 014154 255 D-FRETPIKAVAEE----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------------CSGSI 304 (430)
Q Consensus 255 ~-~~~~~i~~~~~s----p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~~~v 304 (430)
. .|...|.+++|+ |++.+|++|+.|+.|++||+++++++..+.+| |...|
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 332 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL 332 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence 5 677899999555 56889999999999999999999988888754 35568
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee-----------------------------------ccccceE
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-----------------------------------QHLNEVV 349 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~~v 349 (430)
++++|+ ++.+|++|+.|+.|++||+.+++.+..+.-. .| ...|
T Consensus 333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I 410 (437)
T 3gre_A 333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDII 410 (437)
T ss_dssp CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------------CCCE
T ss_pred EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccce
Confidence 889999 7789999999999999999998877764210 14 5567
Q ss_pred Eeeecccc--ccc-cccCCCCceEecC
Q 014154 350 FDSAFADK--EVA-NAAADAPMLEIQN 373 (430)
Q Consensus 350 ~~~~~s~~--g~~-~~~~~d~~i~~~~ 373 (430)
.+++|+++ +.+ ++++.||.|++|+
T Consensus 411 ~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 411 NSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeEeeeccCCceEEEEEcCCceEEEeC
Confidence 99999998 666 9999999999995
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-35 Score=263.94 Aligned_cols=252 Identities=12% Similarity=0.104 Sum_probs=200.2
Q ss_pred eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS 121 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 121 (430)
+..+.+|...|..++| +|+|++||+|+.|++|+|||+..+... .+
T Consensus 2 ~~~~~~h~~~V~~~~~----s~~g~~las~s~D~~v~iw~~~~~~~~----------------~~--------------- 46 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVM----DYYGKRMATCSSDKTIKIFEVEGETHK----------------LI--------------- 46 (297)
T ss_dssp CEECCSCSSCEEEEEE----CTTSSEEEEEETTSCEEEEEBCSSCBC----------------CC---------------
T ss_pred ceeccCCcCceEEEEE----CCCCCEEEEEeCCCEEEEEecCCCCcE----------------EE---------------
Confidence 3457789888655554 678889999999999999998532100 00
Q ss_pred cCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe--ee
Q 014154 122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE--KI 197 (430)
Q Consensus 122 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~--~~ 197 (430)
..+ ..|...|.+++|++ ++++|++|+.|++|++||+++++ .+
T Consensus 47 ---------------------------------~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 47 ---------------------------------DTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI 92 (297)
T ss_dssp ---------------------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred ---------------------------------EEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence 011 14667888999976 38999999999999999998764 34
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCC-----
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPD----- 269 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~----- 269 (430)
..+..|. ..|.+++| +|+ +.+|++++.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 93 ~~~~~h~---------~~v~~v~~--~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 93 AVHAVHS---------ASVNSVQW--APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEeecCC---------CceeEEEe--CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 4444443 67999999 665 88999999999999999987532 24677889999999999997
Q ss_pred --------CCEEEEEeCCCcEEEEEccCCe----EEeeeeCCCCCCeEEEEecCCC---CeEEEEeCCCcEEEEECCCCc
Q 014154 270 --------SFNIYIGNGSGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 270 --------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~~dg~i~iwd~~~~~ 334 (430)
+++|++|+.|+.|++||+++++ +...+.+| ...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 5799999999999999998765 56778888 8999999999985 799999999999999998753
Q ss_pred e--eeEEEe--eccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 335 L--LSAVFL--KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 335 ~--~~~~~~--~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
. .... + .+| ...+++++|+|+|++ ++++.|+.|++|+...
T Consensus 241 ~~~~~~~-~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 241 GPWKKTL-LKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SCCEEEE-SSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred Cccceee-eecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 2 1111 2 344 556899999999998 8899999999998754
No 55
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-36 Score=303.20 Aligned_cols=329 Identities=9% Similarity=0.012 Sum_probs=231.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||+|+||+.... +....+. |...|.. +.| +| |++|++++.|++|+|||+.+++.+..+..
T Consensus 30 ~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~-~~~~V~~--l~f--sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~- 97 (902)
T 2oaj_A 30 NLLAIATVTGEVHIYGQQQV-----EVVIKLE-DRSAIKE--MRF--VK-GIYLVVINAKDTVYVLSLYSQKVLTTVFV- 97 (902)
T ss_dssp TEEEEEETTSEEEEECSTTC-----EEEEECS-SCCCEEE--EEE--ET-TTEEEEEETTCEEEEEETTTCSEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----EEEEEcC-CCCCEEE--EEE--cC-CCEEEEEECcCeEEEEECCCCcEEEEEcC-
Confidence 46889999999999998875 4444443 6666544 444 45 67999999999999999999887777642
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee------------------------------cC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV------------------------------TK 144 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~------------------------------~~ 144 (430)
...+.++.+.+.. ..+++++.+|.+++|++.. ++
T Consensus 98 --------~~~V~~v~~sp~g--------~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 98 --------PGKITSIDTDASL--------DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp --------SSCEEEEECCTTC--------SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred --------CCCEEEEEECCCC--------CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 2366666665443 4888888999999887531 11
Q ss_pred c-----cccCCCcceEEeeecC----------------------------CCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 014154 145 V-----SAESSCSTVKSWNVCA----------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 145 ~-----~~~~~~~~i~~~~~~~----------------------------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~ 191 (430)
. ++++.++.+ +|++.. ...|.+++|+|++.+|++++.|+.|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 1 556678888 998643 246999999999999999999999999999
Q ss_pred CCCeeeEe--eC---CCCCCC---C-CCcCCcceeEEEEeec--CC----------------------------------
Q 014154 192 DKCEKIWT--AK---PPPKNS---L-GIFTPTWFTSAAFLSI--DD---------------------------------- 226 (430)
Q Consensus 192 ~~~~~~~~--~~---~~~~~~---~-~~~~~~~v~~~~~~~~--~~---------------------------------- 226 (430)
.+++.+.. +. .+.... . ...+...|.+++|.+. |+
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 98877643 21 111000 0 0001123444444321 11
Q ss_pred -------------------------------------------CCEEEEEeCCCcEEEEECCCCCcceE-----------
Q 014154 227 -------------------------------------------HRKFVAGTNDHQVRLYDTSAQRRPVM----------- 252 (430)
Q Consensus 227 -------------------------------------------~~~l~s~~~dg~i~iwd~~~~~~~~~----------- 252 (430)
...+++++.|+.|++||+.++.....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 22445555566677777654321000
Q ss_pred -----------------------------EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE--eee----e
Q 014154 253 -----------------------------SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCF----I 297 (430)
Q Consensus 253 -----------------------------~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~----~ 297 (430)
.+.+|...+.+++|+|++++|++|+.|++|++||+.++... ..+ .
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence 01233344455667899999999999999999999887421 111 1
Q ss_pred -----CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc--------------------------------------
Q 014154 298 -----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ-------------------------------------- 334 (430)
Q Consensus 298 -----~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------------- 334 (430)
+| ...|++++|+|++++||+|+.||+|+|||+.+++
T Consensus 481 ~~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (902)
T 2oaj_A 481 RTLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT 559 (902)
T ss_dssp HHTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCT
T ss_pred hhcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCC
Confidence 56 7899999999999999999999999999998763
Q ss_pred -------eeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 335 -------LLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 335 -------~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
++.. +.+| ...|++++|+|||.+++++.|++|++||...
T Consensus 560 ~~~~g~~~~~~--l~~h-~~~V~svafSpdG~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 560 GVRQGFMPSTA--VHAN-KGKTSAINNSNIGFVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp TCSEEEEEEEE--ECCC-SCSEEEEEECBTSEEEEEETTSEEEEEETTT
T ss_pred CCCCccceeEE--EEcC-CCcEEEEEecCCcEEEEEeCCCcEEEEECCC
Confidence 2333 5677 5567999999999339999999999999765
No 56
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.1e-35 Score=271.99 Aligned_cols=273 Identities=14% Similarity=0.167 Sum_probs=217.6
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecC--CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
+++.+.|++|+|||+.++ ++...+. +|... +.+++| +|+|++||+|+.||.|+|||+.+++.+..+.+|
T Consensus 118 ~lAvgld~tV~lWd~~tg-----~~~~~~~~~~~~~~--V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h 188 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEY--ISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 188 (420)
T ss_dssp EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCC--EEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCc--EEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC
Confidence 555567999999999997 5665554 45555 556666 788999999999999999999999988887664
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+.++.+- . ..+++++.++.+.+|+..... ..+..+. .|...+..+.++|++
T Consensus 189 --------~~~v~~~s~~---~-------~~l~sgs~d~~i~~~d~~~~~-------~~~~~~~-~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 189 --------SARVGSLSWN---S-------YILSSGSRSGHIHHHDVRVAE-------HHVATLS-GHSQEVCGLRWAPDG 242 (420)
T ss_dssp --------SSCEEEEEEE---T-------TEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred --------CCceEEEeeC---C-------CEEEEEeCCCceeEeeecccc-------eeeEEec-ccccceeeeeecCCC
Confidence 3456555432 1 488999999999999875432 2444444 678899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCee----eEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEE--eCCCcEEEEECCCC
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAG--TNDHQVRLYDTSAQ 247 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~--~~dg~i~iwd~~~~ 247 (430)
.++++++.|+.+++|+..+++. +.....+ ...|.+++| +|. ..+++++ +.|+.|++||+.++
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~---------~~~V~~~~~--~p~~~~~la~~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---------QGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCCSEEECCC---------SSCEEEEEE--CTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred CeeeeeeccccceEEeeccccccceeeeeeccc---------CCceeeeee--CCCcccEEEEEeecCCCEEEEEeCCcc
Confidence 9999999999999999987643 2233333 367999999 554 4566654 47999999999986
Q ss_pred CcceEEEeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 325 (430)
. ....+..| ..+.++.|+|+++.+++++ .|+.|+|||+.+++++.++.+| ...|++++|+|+|.+|+||+.|++|
T Consensus 312 ~-~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 312 A-CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp E-EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEE
T ss_pred c-cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeE
Confidence 5 36666655 6789999999999998876 6899999999999999999998 8999999999999999999999999
Q ss_pred EEEECCCCceeeE
Q 014154 326 RFWDIKTRQLLSA 338 (430)
Q Consensus 326 ~iwd~~~~~~~~~ 338 (430)
+|||+.+..+...
T Consensus 389 riWdv~~~~~~~~ 401 (420)
T 4gga_A 389 RLWRCFELDPARR 401 (420)
T ss_dssp EEECCSCSSCC--
T ss_pred EEEECCCCCccch
Confidence 9999987665554
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-35 Score=270.44 Aligned_cols=276 Identities=15% Similarity=0.182 Sum_probs=223.1
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCC-CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
+..+++++.||.|++|++.++ +....+.. |... +.++.| +|+|++|++|+.||.|++||+.+++.+..+.
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~-----~~~~~~~~~~~~~--v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 173 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSG-----SVSALAETDESTY--VASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTC-----CEEEEEECCTTCC--EEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEECCCeEEEeeCCCC-----cEeEeeecCCCCC--EEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence 356899999999999999987 45544443 6666 455555 7788999999999999999999998887766
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
. +...+.++.+ + . ..+++++.++.+.+|++.... ..+..+. .|...|.+++|+|
T Consensus 174 ~--------~~~~v~~~~~-~--~-------~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~ 227 (401)
T 4aez_A 174 G--------HQARVGCLSW-N--R-------HVLSSGSRSGAIHHHDVRIAN-------HQIGTLQ-GHSSEVCGLAWRS 227 (401)
T ss_dssp C--------CSSCEEEEEE-E--T-------TEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECT
T ss_pred C--------CCCceEEEEE-C--C-------CEEEEEcCCCCEEEEecccCc-------ceeeEEc-CCCCCeeEEEEcC
Confidence 4 3457777776 2 2 489999999999999986332 1344444 6788999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEe--CCCcEEEEECCCCCc
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGT--NDHQVRLYDTSAQRR 249 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~--~dg~i~iwd~~~~~~ 249 (430)
++++|++++.|+.|++||+.+++.+..+..+. ..|.+++| +|++ .++++++ .|+.|++||+.++.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~--~p~~~~ll~~~~gs~d~~i~i~d~~~~~- 295 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHN---------AAVKAVAW--CPWQSNLLATGGGTMDKQIHFWNAATGA- 295 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCS---------SCCCEEEE--CTTSTTEEEEECCTTTCEEEEEETTTCC-
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCc---------ceEEEEEE--CCCCCCEEEEecCCCCCEEEEEECCCCC-
Confidence 99999999999999999999998888877654 77999999 7755 5666665 79999999999865
Q ss_pred ceEEEeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 325 (430)
++..+. +...|.+++|+|++++|++++ .||.|++||+.+++... .+.+| ...|.+++|+|++.+|++++.||.|
T Consensus 296 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 296 RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEE
T ss_pred EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcE
Confidence 466665 567899999999999999954 89999999999976544 46677 8899999999999999999999999
Q ss_pred EEEECCCCceeeE
Q 014154 326 RFWDIKTRQLLSA 338 (430)
Q Consensus 326 ~iwd~~~~~~~~~ 338 (430)
++|++.+++.+..
T Consensus 374 ~iw~~~~~~~~~~ 386 (401)
T 4aez_A 374 KFWRVYDGDHVKR 386 (401)
T ss_dssp EEEECCC------
T ss_pred EEEECCCCccccc
Confidence 9999999887765
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-37 Score=291.13 Aligned_cols=326 Identities=10% Similarity=-0.005 Sum_probs=222.9
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecC--CCCCceeEEeecCCeEEEecCCCCcccce--ee
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDLRVA--IS 92 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~g~~l~~g~~dg~i~iwd~~~~~~~~~--~~ 92 (430)
+++++.||+|+||++..+. ........+..|.+.+..++++++. .+++.+||+|+.||+|+|||+.++..... +.
T Consensus 176 laS~s~D~tI~iWd~~~~~-~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTST-LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp ------CEEEEEEEEETTT-CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hccCCCCceEEEEEccCCC-CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 5678899999999998752 1111223456677776666665531 24578999999999999999977643210 00
Q ss_pred ccCC-CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE--E
Q 014154 93 NAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS--K 169 (430)
Q Consensus 93 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~--~ 169 (430)
...+ ..+.++...+.++.+.+. +.+++++.||++++|++..... .+..+. .|...|.++ +
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~---------~~lasgs~DgtV~lWD~~~~~~-------~~~~~~-~H~~~V~sv~~~ 317 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP---------TTVVCGFKNGFVAEFDLTDPEV-------PSFYDQ-VHDSYILSVSTA 317 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS---------SEEEEEETTSEEEEEETTBCSS-------CSEEEE-CSSSCEEEEEEE
T ss_pred ecCceEEEEcCCCCEEEEEecCC---------CeEEEEeCCCEEEEEECCCCCC-------ceEEee-cccccEEEEEEE
Confidence 0000 012345567888777542 4899999999999999864321 233333 678899999 5
Q ss_pred EcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 170 VDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 170 ~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
|+|++ .+|++++.|++|+|||+++++....+..+.. ...|.+++| +|++..|++++.|++|++||++++.
T Consensus 318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~-------~~~v~~v~f--sp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR-------GSNLVPVVY--CPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS-------CCSCCCEEE--ETTTTEEEEECSSSEEEEEETTCTT
T ss_pred cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc-------cCcccceEe--CCCcCeEEEeCCCCcEEEEECcccc
Confidence 68887 8999999999999999988766554443321 024788999 8999999999999999999999866
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC----CCCCCeEEEEecCCCCeEEEEeCCCc
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG----KCSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~s~~~dg~ 324 (430)
. +..+.+|...|++|+|+|++++|++|+.|++|++||+... .+..+.. +....|..++|+|++..+. .. | .
T Consensus 389 ~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~-~-~ 463 (524)
T 2j04_B 389 A-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID-S-S 463 (524)
T ss_dssp C-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-EC-C-C
T ss_pred c-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-cc-C-C
Confidence 4 6778899999999999999999999999999999998653 2222211 1123578999999998552 22 2 2
Q ss_pred EEEEECC-CCceeeEEEeeccccceEEeeecccccc---c-cccCCCCceEecCCCCC
Q 014154 325 LRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEV---A-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 325 i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~-~~~~~d~~i~~~~~~~~ 377 (430)
+.+|+.. ++.++.. +.+| ...|++++|+|++. . ++++.+|.|+||+....
T Consensus 464 ~~~~~~~~~g~~~~~--l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 464 YEVYPLTVNDVSKAK--IDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCC---------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ceecccccCCcceee--ecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 4444433 4566655 6677 45679999999975 5 88889999999998664
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.2e-36 Score=273.23 Aligned_cols=305 Identities=12% Similarity=0.065 Sum_probs=238.4
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
...+|...|..++++++......++++++.++.|++||+.+++.+..+..+... .+...+.++.+.+.... ..
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~----~~ 85 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSNT----SH 85 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTTT----CC
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCCC----CC
Confidence 345788997777776531122446777777889999999988887777654221 24467888888776321 11
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..+++++.+|.+.+|++.... .+..+. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQ--------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCC--------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CEEEEecCCCEEEEEEchhce--------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 479999999999999875332 444544 5789999999999 999999999999999999999988888732
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---------------------------eEEEe
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---------------------------VMSFD 255 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~~~ 255 (430)
.. .|...|.+++| +|++.+|++++.|+.|++||+++++.. .....
T Consensus 157 ~~------~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VE------GHRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TT------SCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cc------cccCceeEEEE--CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 11 12377999999 899999999999999999999874321 12233
Q ss_pred ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--------------EEeeeeCCCCCCeEEEEecCC--CCeEEEE
Q 014154 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------LLGCFIGKCSGSIRSIARHPT--LPIIASC 319 (430)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~v~~i~~~~~--~~~l~s~ 319 (430)
.|...|.+++|+ +++|++++.|+.|++||+++++ .+..+..| ...|++++|+|+ +.+|+++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEE
Confidence 488999999998 6799999999999999998764 37778887 889999999999 9999999
Q ss_pred eCCCcEEEEECCCCceee--EEEeeccc-cceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 320 GLDSYLRFWDIKTRQLLS--AVFLKQHL-NEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~~~~--~~~~~~~~-~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
+.||.|++||+.+++... ...+.+|. ...|.+++|+|++++ ++++.||.|++|+..
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999886543 11144442 456899999999998 899999999999874
No 60
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.5e-36 Score=280.59 Aligned_cols=294 Identities=13% Similarity=0.118 Sum_probs=220.6
Q ss_pred ecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154 44 RWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
....|...|++++ | +| ++++||+|+.||.|+|||+.++.....+. +.+|.+.|.++.|.+...
T Consensus 114 ~~~~~~~~V~~l~--~--~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~------~~gH~~~V~~l~f~p~~~------ 177 (435)
T 4e54_B 114 KAAPFDRRATSLA--W--HPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK------GIGAGGSITGLKFNPLNT------ 177 (435)
T ss_dssp EEEECSSCEEEEE--E--CSSCTTCEEEEETTSCEEEECSSCCSCCEEEC------CCSSSCCCCEEEECSSCT------
T ss_pred cCCCCCCCEEEEE--E--eCCCCCEEEEEeCCCEEEEEECCCCCceeEEE------ccCCCCCEEEEEEeCCCC------
Confidence 3445666655544 4 55 45689999999999999998776544433 234567888888875444
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC--CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
..+++++.||++++|++... .+..+...+ ...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus 178 -~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~ 246 (435)
T 4e54_B 178 -NQFYASSMEGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL 246 (435)
T ss_dssp -TEEEEECSSSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred -CEEEEEeCCCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence 58999999999999997422 333333222 34578899999999999999999999999864 445555
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcc--eEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDSFNIYIGN 277 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (430)
..|. ..|.+++| +|++. +|++|+.|+.|++||+++.... +....+|...|++++|+|++++|++++
T Consensus 247 ~~h~---------~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 247 RMHK---------KKVTHVAL--NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp BCCS---------SCEEEEEE--CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred eccc---------ceEEeeee--cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 5443 77999999 77765 7889999999999999875432 233457889999999999999999999
Q ss_pred CCCcEEEEEccCCeEEeeeeCCCC-----CCeEEEEecCCCCeEEEEe------------CCCcEEEEECCCCceeeEEE
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHPTLPIIASCG------------LDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~ 340 (430)
.|+.|++||++++.....+..|.. ..+....|+|++.++++++ .++.|++||..+++.+..+
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l- 394 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL- 394 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-
T ss_pred CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-
Confidence 999999999999988777765511 1234556778777777664 3457999999999998874
Q ss_pred eeccccceEEee-eccccccccccCCCCceEecCCCCC
Q 014154 341 LKQHLNEVVFDS-AFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 341 ~~~~~~~~v~~~-~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
..+| ...|.++ +|+|+|.+++++.|+.|+||+....
T Consensus 395 ~~~~-~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~g 431 (435)
T 4e54_B 395 YDPE-SSGISSLNEFNPMGDTLASAMGYHILIWSQQEA 431 (435)
T ss_dssp CCSS-CCCCCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred eCCC-CCcEEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence 3455 3445665 7999999955566899999998653
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-34 Score=263.30 Aligned_cols=283 Identities=13% Similarity=0.140 Sum_probs=234.0
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|++||+..+ +.+..+.+|...+. ++.+ +|++++|++++.||.|++||+.+++.+..+..
T Consensus 45 ~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~--~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 114 (369)
T 3zwl_B 45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGHTGTIW--SIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWKS- 114 (369)
T ss_dssp CEEEEEESSSCEEEEETTTC-----CEEEEECCCSSCEE--EEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc-----hhhhhhhhcCCcEE--EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-
Confidence 46889999999999999987 78888999988854 4555 67889999999999999999999988777652
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC-----CeeEEEEeeecCcc---ccCCCcceEEeeecCCC--c
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVS---AESSCSTVKSWNVCASG--T 164 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~v~~~~~~~~~---~~~~~~~i~~~~~~~~~--~ 164 (430)
...+.++.+.+.. ..++++..+ +.+.+|++...... .......+.... .+.. .
T Consensus 115 --------~~~v~~~~~~~~~--------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 177 (369)
T 3zwl_B 115 --------PVPVKRVEFSPCG--------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDA 177 (369)
T ss_dssp --------SSCEEEEEECTTS--------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCC
T ss_pred --------CCCeEEEEEccCC--------CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccc
Confidence 2467777776544 478888888 99999999765431 000111222222 2233 8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 165 IAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
+.+++|+|++++|++++.||.|++||+.+ ...+..+..+. ..|.+++| +|++.+|++++.|+.|++||
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE---------KSISDMQF--SPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC---------CceeEEEE--CCCCCEEEEecCCceEEEEE
Confidence 99999999999999999999999999998 67777776654 67999999 89999999999999999999
Q ss_pred CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC--------------cEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------------DLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
++++. .+..+. +...+.+++|+|+++++++++.++ .+++||+.+++.+..+.+| ...|++++|
T Consensus 247 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~ 323 (369)
T 3zwl_B 247 VSTLQ-VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAI 323 (369)
T ss_dssp TTTCC-EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEE
T ss_pred CCCCc-eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEE
Confidence 99865 355555 678999999999999999999988 8999999999999999998 899999999
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
+|++++|++++.||.|++|+++++.....
T Consensus 324 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 324 SPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred CCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 99999999999999999999987665443
No 62
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=277.31 Aligned_cols=285 Identities=17% Similarity=0.276 Sum_probs=228.1
Q ss_pred CCCCc-eeEEe----------ecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154 62 SQNDP-LLAVA----------RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 62 ~p~g~-~l~~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
+|+|+ +|++| +.||.|+|||+.++.....+.. ..+...+.++.+.+.. ..+++++
T Consensus 21 sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~--------~~l~~~~ 86 (416)
T 2pm9_A 21 SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS------LQVDSKFNDLDWSHNN--------KIIAGAL 86 (416)
T ss_dssp CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC------CCCSSCEEEEEECSSS--------SCEEEEE
T ss_pred CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE------EecCCceEEEEECCCC--------CeEEEEc
Confidence 67776 88998 8899999999987763322111 1244678888875543 4889999
Q ss_pred cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe------eeEeeCCC
Q 014154 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE------KIWTAKPP 203 (430)
Q Consensus 131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~ 203 (430)
.+|.+.+|++..... ....+..+. .|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....+..
T Consensus 87 ~dg~v~vw~~~~~~~----~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~- 160 (416)
T 2pm9_A 87 DNGSLELYSTNEANN----AINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ- 160 (416)
T ss_dssp SSSCEEEECCSSTTS----CCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-
T ss_pred cCCeEEEeecccccc----cccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc-
Confidence 999999999864210 011333333 57889999999998 8999999999999999998876 2222211
Q ss_pred CCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCC-CEEEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDS-FNIYI 275 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~-~~l~~ 275 (430)
...|...|.+++| +|+ +.+|++++.|+.|++||+++++ .+..+..| ...|.+++|+|++ .+|++
T Consensus 161 -----~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 161 -----SMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp -----SCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred -----ccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 1123477999999 787 7899999999999999999855 46777766 7889999999997 68999
Q ss_pred EeCCC---cEEEEEccCC-eEEeeee-CCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceE
Q 014154 276 GNGSG---DLASVDIRTG-KLLGCFI-GKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV 349 (430)
Q Consensus 276 ~~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 349 (430)
++.|+ .|++||++++ +++..+. +| ...|.+++|+| ++.+|++++.||.|++||+.+++.+.. +.+| ...+
T Consensus 233 ~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~--~~~~-~~~v 308 (416)
T 2pm9_A 233 ATGSDNDPSILIWDLRNANTPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ--FPAR-GNWC 308 (416)
T ss_dssp EECCSSSCCCCEEETTSTTSCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE--EECS-SSCC
T ss_pred EECCCCCceEEEEeCCCCCCCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee--ecCC-CCce
Confidence 99998 9999999986 6677777 77 89999999999 899999999999999999999999887 5567 4557
Q ss_pred Eeeeccccc-cc-cccCCCCceEecCCCCCc
Q 014154 350 FDSAFADKE-VA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 350 ~~~~~s~~g-~~-~~~~~d~~i~~~~~~~~~ 378 (430)
.+++|+|++ .+ ++++.|+.|++|+.....
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 999999998 56 899999999999987654
No 63
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=257.46 Aligned_cols=275 Identities=14% Similarity=0.150 Sum_probs=212.1
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
+++.+.|++|+|||+.++ +++..+..|.....+.++.+ +|+|++||+|+.||+|++||+.+++.+..+.+|.
T Consensus 38 ~lAvg~D~tV~iWd~~tg-----~~~~~~~~~~~~~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~- 109 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS- 109 (318)
T ss_dssp EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-
T ss_pred EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCcc-
Confidence 566667999999999987 66666554444433566666 7889999999999999999999999888877642
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
..+..+... . ..+++++.++.+.+|...... ..+... ..|...+..+.+++++++
T Consensus 110 -------~~~~~~~~~---~-------~~l~s~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (318)
T 4ggc_A 110 -------ARVGSLSWN---S-------YILSSGSRSGHIHHHDVRVAE-------HHVATL-SGHSQEVCGLRWAPDGRH 164 (318)
T ss_dssp -------SCEEEEEEE---T-------TEEEEEETTSEEEEEETTSSS-------CEEEEE-ECCSSCEEEEEECTTSSE
T ss_pred -------ceEEEeecC---C-------CEEEEEecCCceEeeecCCCc-------eeEEEE-cCccCceEEEEEcCCCCE
Confidence 244433321 2 488899999999999865332 133333 367889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EE--EEEeCCCcEEEEECCCCCcceEE
Q 014154 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF--VAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l--~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
|++++.|+.|++||+.+++........ ...+...|.++.+ .|++. .+ ++++.++.|++||..... ...
T Consensus 165 l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~i~lwd~~~~~--~~~ 235 (318)
T 4ggc_A 165 LASGGNDNLVNVWPSAPGEGGWVPLQT-----FTQHQGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSGA--CLS 235 (318)
T ss_dssp EEEEETTSCEEEEESSCBTTBSCCSEE-----ECCCCSCEEEEEE--CTTSTTEEEEEECTTTCEEEEEETTTCC--EEE
T ss_pred EEEEecCcceeEEECCCCcccccceee-----ecccCCceEEEEe--cCCCCcEEEEEecCCCCEEEEEeccccc--ccc
Confidence 999999999999999876532211110 0012266888888 55443 33 456788999999999755 334
Q ss_pred EeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
...+...+..+.|+|++..+++++ .|+.|++||+++++++.++.+| ...|++++|+|++++|++|+.||+|+|||+.
T Consensus 236 ~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 236 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 445667899999999999888765 7899999999999999999998 8999999999999999999999999999997
Q ss_pred CCc
Q 014154 332 TRQ 334 (430)
Q Consensus 332 ~~~ 334 (430)
+..
T Consensus 315 ~~d 317 (318)
T 4ggc_A 315 ELD 317 (318)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=268.64 Aligned_cols=300 Identities=12% Similarity=0.122 Sum_probs=229.5
Q ss_pred eecCCCCCCcceeeeeecCCCCCc-eeEEeec---CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDP-LLAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE 118 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 118 (430)
..+.+|...+. ++.| +|+++ ++++|+. ||.|+|||+.+++....... .+...+.++.+.+....
T Consensus 12 ~~~~~h~~~v~--~~~~--~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~- 79 (357)
T 3i2n_A 12 HIQKGFNYTVF--DCKW--VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSLQ- 79 (357)
T ss_dssp EEEEECSSCEE--EEEE--CTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCTT-
T ss_pred hhccCCCCceE--EEEE--cCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCCC-
Confidence 34566888855 4555 66775 4556766 99999999988875544321 23457787777665300
Q ss_pred ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE------EcCCCCEEEEEeCCCeEEEEECC
Q 014154 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLD 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~i~~~d~~ 192 (430)
+..+++++.+|.+.+|++.... ..+..+. .|...|.++. |+|++++|++++.|+.|++||+.
T Consensus 80 ----~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 80 ----QRYLATGDFGGNLHIWNLEAPE-------MPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp ----TCCEEEEETTSCEEEECTTSCS-------SCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred ----CceEEEecCCCeEEEEeCCCCC-------ccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence 1589999999999999976432 1344444 6788899995 56889999999999999999999
Q ss_pred CCe-eeEeeCCCCCCCCCCcCCcceeEEEEe--ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-
Q 014154 193 KCE-KIWTAKPPPKNSLGIFTPTWFTSAAFL--SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP- 268 (430)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp- 268 (430)
++. .+..+..+.... ...+.+++|. .+|++.+|++++.|+.|++||++++.. .....|...|.+++|+|
T Consensus 148 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 148 QKDDPVANMEPVQGEN-----KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRK 220 (357)
T ss_dssp SCSSCSEEECCCTTSC-----CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCS
T ss_pred CCCCcceeccccCCCC-----CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCC
Confidence 876 566665544221 1468888841 178999999999999999999998653 44567889999999999
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCeEEeeee-----CCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCc------
Q 014154 269 --DSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ------ 334 (430)
Q Consensus 269 --~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~------ 334 (430)
++.+|++++.||.|++||+++++.+..+. +| ...|++++|+|++. +|++++.||.|++||++++.
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 99999999999999999999877655554 77 89999999999998 89999999999999998643
Q ss_pred -------------eeeEEEeeccccceEEeeeccccccc-c-ccCCCCceEecCCCCC
Q 014154 335 -------------LLSAVFLKQHLNEVVFDSAFADKEVA-N-AAADAPMLEIQNGNDT 377 (430)
Q Consensus 335 -------------~~~~~~~~~~~~~~v~~~~~s~~g~~-~-~~~~d~~i~~~~~~~~ 377 (430)
.+.. +.+| ...|.+++|+|++.+ + +++.|+.|++|+....
T Consensus 300 ~~g~~~~~~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQN--VTLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TTSCCCCCCCEEEEEEE--EECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCCccccccccceeec--cccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 3333 5567 556799999999998 5 7899999999998653
No 65
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.3e-35 Score=268.00 Aligned_cols=289 Identities=10% Similarity=0.067 Sum_probs=230.8
Q ss_pred CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
..|...+..+++ +|+|++|++|+.||.|++||+.+++ .+..+.. +...+.++.+.+..
T Consensus 5 ~~~~~~i~~~~~----s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~-------- 64 (372)
T 1k8k_C 5 SFLVEPISCHAW----NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE--------HNGQVTGVDWAPDS-------- 64 (372)
T ss_dssp ESCSSCCCEEEE----CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEEETTT--------
T ss_pred cccCCCeEEEEE----CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC--------CCCcccEEEEeCCC--------
Confidence 347777555544 6788899999999999999998876 5666654 34578888877643
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEe-eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEe
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWT 199 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~ 199 (430)
..+++++.++.+.+|++.... ..... ...+...|.+++|+|++++|++++.|+.|++||++.+.. ...
T Consensus 65 ~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 65 NRIVTCGTDRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp TEEEEEETTSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCe--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 489999999999999986432 12222 235678999999999999999999999999999987653 222
Q ss_pred e-CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-----------------CCcceEEEeecCCCe
Q 014154 200 A-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----------------QRRPVMSFDFRETPI 261 (430)
Q Consensus 200 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------------~~~~~~~~~~~~~~i 261 (430)
+ ..+ ...|.+++| +|++.+|++++.|+.|++||++. ...++..+..|...|
T Consensus 137 ~~~~~---------~~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 205 (372)
T 1k8k_C 137 IKKPI---------RSTVLSLDW--HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205 (372)
T ss_dssp ECTTC---------CSCEEEEEE--CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred eeccc---------CCCeeEEEE--cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence 2 222 367999999 88999999999999999999641 133577788899999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC--Cce--ee
Q 014154 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT--RQL--LS 337 (430)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~--~~~--~~ 337 (430)
.+++|+|++++|++++.|+.|++||+++++++..+..| ...|.+++|+|++.+|+++ .|+.|++|++.+ +.. +.
T Consensus 206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEee
Confidence 99999999999999999999999999999999999988 8899999999999988877 899999999987 421 00
Q ss_pred E----------------------------------EEe-eccccceEEeeecc-ccc---cc-cccCCCCceEecCCCC
Q 014154 338 A----------------------------------VFL-KQHLNEVVFDSAFA-DKE---VA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 338 ~----------------------------------~~~-~~~~~~~v~~~~~s-~~g---~~-~~~~~d~~i~~~~~~~ 376 (430)
. ..+ .+| ...|++++|. ++| .+ ++++.||.|++|+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCC--------CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccCccccchhhhcchhhhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 112 366 4567999966 565 66 9999999999999765
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-34 Score=288.90 Aligned_cols=284 Identities=11% Similarity=0.100 Sum_probs=224.8
Q ss_pred ccCCCCCCC---cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC
Q 014154 6 TLECPGCPP---LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP 82 (430)
Q Consensus 6 ~~~~~~~~~---~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~ 82 (430)
.+.|...++ ..|+||+.||+|++|++.............+.+|...|..+ ++ +|+|++|++|+.||+|+|||+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v--~~--s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV--VL--SSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEE--EE--CTTSSEEEEEETTSEEEEEET
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEE--EE--CCCCCEEEEEeCCCcEEEEEC
Confidence 344444432 46899999999999999874222234556788899886554 44 678899999999999999999
Q ss_pred CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ec
Q 014154 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VC 160 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~ 160 (430)
.++..+..+.+| ...+.++.+.+.. ..+++++.|+.+++|++.... ...+.. ..
T Consensus 460 ~~~~~~~~~~~h--------~~~v~~~~~s~~~--------~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~ 515 (694)
T 3dm0_A 460 AAGVSTRRFVGH--------TKDVLSVAFSLDN--------RQIVSASRDRTIKLWNTLGEC--------KYTISEGGEG 515 (694)
T ss_dssp TTTEEEEEEECC--------SSCEEEEEECTTS--------SCEEEEETTSCEEEECTTSCE--------EEEECSSTTS
T ss_pred CCCcceeEEeCC--------CCCEEEEEEeCCC--------CEEEEEeCCCEEEEEECCCCc--------ceeeccCCCC
Confidence 999888777654 4578888776544 489999999999999853211 111111 24
Q ss_pred CCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154 161 ASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 161 ~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 238 (430)
|...|.+++|+|++ ..|++++.|++|++||+.+++....+..|. ..|++++| +|++.+|++|+.|+.
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~sg~~Dg~ 584 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---------GYVSTVAV--SPDGSLCASGGKDGV 584 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSB
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--eCCCCEEEEEeCCCe
Confidence 66789999999976 689999999999999999998888887765 77999999 899999999999999
Q ss_pred EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC------------------
Q 014154 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------------------ 300 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------ 300 (430)
|++||+++++. +..+.. ...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+.
T Consensus 585 i~iwd~~~~~~-~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (694)
T 3dm0_A 585 VLLWDLAEGKK-LYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661 (694)
T ss_dssp CEEEETTTTEE-EECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred EEEEECCCCce-EEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence 99999998653 555554 46899999999998887765 5669999999999887775431
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
...+++++|+|++++|++|+.||.|+||++.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1137899999999999999999999999985
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-35 Score=271.88 Aligned_cols=319 Identities=13% Similarity=0.133 Sum_probs=235.9
Q ss_pred CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecC----CCCcc------ccee
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP----LNGDL------RVAI 91 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~----~~~~~------~~~~ 91 (430)
...+.+|+++.. ........|...+. ++.+ +|+|+ +||+|+.||.|++|++ .+++. ...+
T Consensus 24 ~~~~~~~~~~~~-----~~~~~~~~~~~~v~--~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 94 (425)
T 1r5m_A 24 NSIDSSDDLDGF-----VKILKEIVKLDNIV--SSTW--NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL 94 (425)
T ss_dssp ----------CC-----CEECEEEEECSCCS--EEEE--CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE
T ss_pred ccccccccchhh-----hhheeeeeccCceE--EEEE--CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc
Confidence 345667877663 22222233456654 4455 77888 9999999999999999 88773 3333
Q ss_pred eccCC--CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154 92 SNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 92 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
..... .....+...+.++.+.+.. ..+++++.+|.+.+|+.. ...+..+. .|...|.+++
T Consensus 95 ~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~l~~~~~dg~i~i~~~~---------~~~~~~~~-~~~~~v~~~~ 156 (425)
T 1r5m_A 95 RHPFALSASSGKTTNQVTCLAWSHDG--------NSIVTGVENGELRLWNKT---------GALLNVLN-FHRAPIVSVK 156 (425)
T ss_dssp ECCCCCC------CBCEEEEEECTTS--------SEEEEEETTSCEEEEETT---------SCEEEEEC-CCCSCEEEEE
T ss_pred cccccccccccCCCCceEEEEEcCCC--------CEEEEEeCCCeEEEEeCC---------CCeeeecc-CCCccEEEEE
Confidence 32100 0011245578888876643 489999999999999821 12444443 5788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC------CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG------IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
|+|++++|++++.|+.|++||+.+++.+..+..+...... ......+.++.| +++ ..+++++.++.|++||
T Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~i~~~d 233 (425)
T 1r5m_A 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW--VDD-DKFVIPGPKGAIFVYQ 233 (425)
T ss_dssp ECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE--EET-TEEEEECGGGCEEEEE
T ss_pred ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE--cCC-CEEEEEcCCCeEEEEE
Confidence 9999999999999999999999999988887765422100 000112888899 555 4688999999999999
Q ss_pred CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
+.++. ++..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ +|++++.|+
T Consensus 234 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~d~ 310 (425)
T 1r5m_A 234 ITEKT-PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-KVISCSMDG 310 (425)
T ss_dssp TTCSS-CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-EEEEEETTS
T ss_pred cCCCc-eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-EEEEEeCCC
Confidence 99865 57888899999999999999999999999999999999999999899887 8899999999999 999999999
Q ss_pred cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
.|++||+.+++.+.. +..| ...+.+++|+|++.+ ++++.|+.|++|+....
T Consensus 311 ~i~i~d~~~~~~~~~--~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 311 SVRLWSLKQNTLLAL--SIVD-GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEEEEETTTTEEEEE--EECT-TCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred cEEEEECCCCcEeEe--cccC-CccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999998887 4455 455799999999998 88999999999998653
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-34 Score=265.57 Aligned_cols=290 Identities=15% Similarity=0.127 Sum_probs=237.4
Q ss_pred eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
....+|...+.+..+.+ ++ ..+++++.||.|++||+.+++....+.. .+...+.++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~--s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~------- 146 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDW--SN--LNVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSHDG------- 146 (401)
T ss_dssp EECTTCCCCTTCBCEEE--CT--TSEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECTTS-------
T ss_pred eeCCCCcCCceEEEEee--cC--CCEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECCCC-------
Confidence 33445666677777777 32 4588889999999999999987766554 134678888876643
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEeeC
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAK 201 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~ 201 (430)
..+++++.+|.+.+|++.... .+..+. .|...|.+++| ++++|++++.||.|++||++ .......+.
T Consensus 147 -~~l~~~~~dg~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 147 -SFLSVGLGNGLVDIYDVESQT--------KLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp -SEEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred -CEEEEECCCCeEEEEECcCCe--------EEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 489999999999999975332 445554 67889999999 46799999999999999998 455566666
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEe--C
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN--G 278 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~--~ 278 (430)
.+. ..|.+++| +|++.+|++|+.|+.|++||++++. ++..+..|...|.+++|+|++. ++++++ .
T Consensus 215 ~~~---------~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 215 GHS---------SEVCGLAW--RSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp CCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred CCC---------CCeeEEEE--cCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 554 77999999 8899999999999999999999855 5778888999999999999774 555554 6
Q ss_pred CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 356 (430)
|+.|++||+++++++..+.. ...|.+++|+|++.+|++++ .||.|++||+.+++......+.+| ...|.+++|+|
T Consensus 283 d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~ 359 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSP 359 (401)
T ss_dssp TCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECT
T ss_pred CCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECC
Confidence 99999999999999988874 57899999999999999954 899999999999887777667777 45579999999
Q ss_pred cccc-cccCCCCceEecCCCCC
Q 014154 357 KEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 357 ~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+|.+ ++++.|+.|++|+....
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC-
T ss_pred CCCEEEEEeCCCcEEEEECCCC
Confidence 9998 88999999999998764
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=270.28 Aligned_cols=317 Identities=9% Similarity=0.064 Sum_probs=247.4
Q ss_pred CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccceeecc-----C
Q 014154 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNA-----G 95 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~ 95 (430)
.++.+++|++..+ +....+.+|...+.+ +.+ +| ++++|++|+.||.|++||+.++.....+... .
T Consensus 21 ~~~~~~v~~~~~~-----~~~~~~~~h~~~v~~--~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 91 (408)
T 4a11_B 21 AESTRRVLGLELN-----KDRDVERIHGGGINT--LDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIG 91 (408)
T ss_dssp HHHHHHHHTEEEC-----TTEEECCCCSSCEEE--EEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEEC
T ss_pred ccCcceeeccccC-----cceeeeeccCCcEEE--EEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccc
Confidence 4467889988876 566677889988554 445 67 8889999999999999999988766655420 1
Q ss_pred CCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC---
Q 014154 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--- 172 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--- 172 (430)
......+...+.++.+.+... ..+++++.++.+.+|++.... .+..+. +...+.++.+++
T Consensus 92 ~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~d~~i~iwd~~~~~--------~~~~~~--~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 92 RDHPDVHRYSVETVQWYPHDT-------GMFTSSSFDKTLKVWDTNTLQ--------TADVFN--FEETVYSHHMSPVST 154 (408)
T ss_dssp TTCTTCCSSCEEEEEECTTCT-------TCEEEEETTSEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSCS
T ss_pred ccccccCCCcEEEEEEccCCC-------cEEEEEeCCCeEEEeeCCCCc--------cceecc--CCCceeeeEeecCCC
Confidence 111123667888888876444 589999999999999976332 333433 567899999988
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcce
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
++.++++++.++.|++||+.+++.+..+..+. ..|.+++| +|++. +|++++.||.|++||++....++
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~ll~~~~~dg~i~i~d~~~~~~~~ 223 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR---------QEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCL 223 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCC---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCC---------CcEEEEEE--CCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence 45599999999999999999998888887665 77999999 78887 69999999999999999866555
Q ss_pred EEE---------------eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEEEecCC
Q 014154 252 MSF---------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIARHPT 312 (430)
Q Consensus 252 ~~~---------------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i~~~~~ 312 (430)
..+ ..|...|.+++|+|++++|++++.|+.|++||+++++....+..+. ...+........
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence 555 5688899999999999999999999999999999988765544320 112222223334
Q ss_pred CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
+..+++++.|+.|++||+.+++.+.. +.+| ...|.+++|+|++.+ ++++.||.|++|+.....
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYSGEQITM--LKGH-YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SSCEEEEEETTEEEEEETTTCCEEEE--ECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CceEEEEecCCEEEEEECcCCcceee--eccC-CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 55677778899999999999999988 6677 556799999999998 899999999999987743
No 70
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=253.06 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=220.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc---cccee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI 91 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~ 91 (430)
..+++|+.||.|++||+..+ +....+..|...+.. +.+ +|++++|++|+.||.|++|++.+.. .+..+
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~~~~v~~--~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~ 100 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQ-----WLGTVVYTGQGFLNS--VCY--DSEKELLLFGGKDTMINGVPLFATSGEDPLYTL 100 (313)
T ss_dssp TEEEEEETTSEEEEEEESSS-----EEEEEEEECSSCEEE--EEE--ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred CEEEEEEcCCcEEEEECCCC-----EEEEEeecCCccEEE--EEE--CCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence 56899999999999999887 677777778887554 445 6688899999999999999987543 33333
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
. .+...+.++.+ + . ..+++++.++.+.+|+. ...+..+. .+...+.++++.
T Consensus 101 ~--------~~~~~i~~~~~-~--~-------~~l~~~~~d~~i~~~d~----------~~~~~~~~-~~~~~v~~~~~~ 151 (313)
T 3odt_A 101 I--------GHQGNVCSLSF-Q--D-------GVVISGSWDKTAKVWKE----------GSLVYNLQ-AHNASVWDAKVV 151 (313)
T ss_dssp C--------CCSSCEEEEEE-E--T-------TEEEEEETTSEEEEEET----------TEEEEEEE-CCSSCEEEEEEE
T ss_pred h--------hcccCEEEEEe-c--C-------CEEEEEeCCCCEEEEcC----------CcEEEecc-cCCCceeEEEEc
Confidence 3 34567777776 2 2 58999999999999981 11344444 577899999998
Q ss_pred C-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 172 I-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 172 ~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
| +++++++++.|+.|++||. ......+... +...+.+++| +|++. +++++.|+.|++||+++++ +
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~--------~~~~i~~~~~--~~~~~-~~~~~~dg~i~i~d~~~~~-~ 217 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQN--DKVIKTFSGI--------HNDVVRHLAV--VDDGH-FISCSNDGLIKLVDMHTGD-V 217 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEET--TEEEEEECSS--------CSSCEEEEEE--EETTE-EEEEETTSEEEEEETTTCC-E
T ss_pred cCCCCEEEEEECCCCEEEEec--CceEEEEecc--------CcccEEEEEE--cCCCe-EEEccCCCeEEEEECCchh-h
Confidence 8 8999999999999999994 4455555441 1267999999 67777 9999999999999999865 5
Q ss_pred eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
+..+..|...|.+++|+|++ .|++++.|+.|++||+++++++..+..| ...|.+++|+|++. +++++.||.|++||+
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 88889999999999999999 6899999999999999999999999998 88999999999998 667899999999999
Q ss_pred CCCceeeEEEe
Q 014154 331 KTRQLLSAVFL 341 (430)
Q Consensus 331 ~~~~~~~~~~~ 341 (430)
++++.+....+
T Consensus 295 ~~~~~~~~~~~ 305 (313)
T 3odt_A 295 EKSRWASEDEI 305 (313)
T ss_dssp CGGGCCC----
T ss_pred CCCceeehhhh
Confidence 99887766433
No 71
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.8e-33 Score=252.77 Aligned_cols=267 Identities=11% Similarity=0.099 Sum_probs=215.7
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecC--CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc--ccee
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAI 91 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~--~~~~ 91 (430)
.+++++ ||.|++|++..+. ....+..+. .|... +.++.+ +|++++|++++.||.|++||+.+++. ...+
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~--v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPG--NKSPVSQLDCLNRDNY--IRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTT--CCSCSEEEECSCTTSB--EEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred EEEEcC-CCeEEEEECCCCC--ceeeeecccccCCCCc--EEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence 455665 9999999998752 112222333 56666 555556 77889999999999999999988763 3333
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.. +...+.++.+.+.. ..+++++.++.+.+|++.... .+..+. .|...|.+++|+
T Consensus 138 ~~--------~~~~i~~~~~~~~~--------~~l~~~~~dg~v~~~d~~~~~--------~~~~~~-~~~~~i~~~~~~ 192 (337)
T 1gxr_A 138 TS--------SAPACYALAISPDS--------KVCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDIS 192 (337)
T ss_dssp EC--------SSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEC
T ss_pred cc--------CCCceEEEEECCCC--------CEEEEEeCCCcEEEEeCCCCc--------eeeeee-cccCceEEEEEC
Confidence 32 33467777776543 488999999999999975332 344443 467899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
|++++|++++.|+.|++||+++++.+..+... ..+.+++| +|++.+|++++.++.|++||+.+.. .
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------~~v~~~~~--s~~~~~l~~~~~~~~i~~~~~~~~~--~ 258 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT----------SQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPD--K 258 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSC--E
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeecCC----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCC--e
Confidence 99999999999999999999998887766432 66899999 8999999999999999999999854 4
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... | ...|.+++|+|++++|++++.||.|++|++
T Consensus 259 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-C-CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 5678899999999999999999999999999999999998875544 4 789999999999999999999999999996
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.4e-35 Score=269.47 Aligned_cols=289 Identities=15% Similarity=0.223 Sum_probs=223.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecC--CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..+++++.++.|++|++..+ .....+..+. .|...+..++++.+..++|++|++|+.||.|++||+.+++.+..+.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp CEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred ceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence 44778888889999999975 1112222222 2557777777777655558899999999999999999998887776
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEE
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV 170 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~ 170 (430)
. +...+.++.+.+... ..+++++.+|.+.+|++.... .+..+. ..+...|.+++|
T Consensus 113 ~--------~~~~i~~~~~~~~~~-------~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 113 G--------HGNAINELKFHPRDP-------NLLLSVSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp S--------CCSCEEEEEECSSCT-------TEEEEEETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEEE
T ss_pred C--------CCCcEEEEEECCCCC-------CEEEEEeCCCeEEEEEeecCe--------EEEEecccccccCceeEEEE
Confidence 5 345888888876333 589999999999999985332 344442 357889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC-------------------CCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------------------PKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
+|++++|++++.|+.|++||+.+++....+... ........|...|.+++| + +.+|+
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~ 245 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--L--GDLIL 245 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE--E--TTEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE--c--CCEEE
Confidence 999999999999999999999876544322210 000000114478999999 4 77999
Q ss_pred EEeCCCcEEEEECCCCCc-------------ceEEEeecCCCeEEEEecCC--CCEEEEEeCCCcEEEEEccCCeE----
Q 014154 232 AGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKL---- 292 (430)
Q Consensus 232 s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~---- 292 (430)
+++.|+.|++||+.+... .+..+..|...|.+++|+|+ +++|++|+.||.|++||+.+++.
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 999999999999987542 36778889999999999999 99999999999999999998763
Q ss_pred EeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 293 LGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 293 ~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
...+.+| +...|++++|+|++++|++++.||.|++||+.+
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 3466665 258999999999999999999999999999853
No 73
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=272.89 Aligned_cols=311 Identities=14% Similarity=0.144 Sum_probs=221.4
Q ss_pred CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----------ccceeeccCCC----CCCCCCCceEEEEEe
Q 014154 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----------LRVAISNAGDS----GAQPEDDGIVGLHLF 112 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----------~~~~~~~~~~~----~~~~~~~~i~~~~~~ 112 (430)
+.+. +.++.| +|+|++||+|+.||.|+|||+.+++ ....+.+|... ........|.++.|.
T Consensus 27 ~~~~--V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 27 EADI--ISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GGGS--EEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccCc--EEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 4455 555556 7789999999999999999998776 24444443200 000001567788887
Q ss_pred ecCcccccccCceEEEEccCCeeEEEEeeecCccc-----cCCC--------------------------cceEEeeecC
Q 014154 113 KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA-----ESSC--------------------------STVKSWNVCA 161 (430)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-----~~~~--------------------------~~i~~~~~~~ 161 (430)
+.... ..+++++.|+.+++|++....... ...+ ...+.+...|
T Consensus 103 ~~~~~------~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 103 PQKNA------AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CCCSS------SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred CCCCc------ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 65420 379999999999999987532100 0000 1123444468
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i 239 (430)
...|.+++|+|++++|++| .|+.|++||+.+. ..+..+..... ....|...|.+++| +|++ .+|++|+.||.|
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPA--NMEELTEVITAAEF--HPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS--SGGGCCCCEEEEEE--CSSCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccc--cccccCcceEEEEE--CCCCCcEEEEEeCCCeE
Confidence 8899999999999999998 7999999999843 33332211100 01123477999999 8888 999999999999
Q ss_pred EEEECCCCCc---ceEEEeecCC------------CeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCC
Q 014154 240 RLYDTSAQRR---PVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS 303 (430)
Q Consensus 240 ~iwd~~~~~~---~~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~ 303 (430)
++||++++.. .+..+..|.. .|.+++|+|++++|++++. +.|++||+++ ++++..+.+| ...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYL 329 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGG
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccc
Confidence 9999998653 1577888775 8999999999999999998 9999999997 8888888887 421
Q ss_pred ---------------eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee--------------------------
Q 014154 304 ---------------IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-------------------------- 342 (430)
Q Consensus 304 ---------------v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------- 342 (430)
+..++|+|++.+|++|+.||.|++||+.+++.+......
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence 334999999999999999999999999998876421000
Q ss_pred ---ccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 343 ---QHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 343 ---~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
-.....+..++|+|++.+++.+..+.+.+|...
T Consensus 410 ~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp GGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred ccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 011234688999999999554455568888643
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.1e-34 Score=289.98 Aligned_cols=319 Identities=12% Similarity=0.063 Sum_probs=253.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|+|||+.++ +.+..+..|...+..+++ +|+|++|++|+.||.|++||+.+++.+..+..+
T Consensus 26 ~~la~~~~~g~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~----s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 96 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIWNYETQ-----VEVRSIQVTETPVRAGKF----IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (814)
T ss_dssp SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEE----EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEeCCCEEEEEECCCC-----ceEEEEecCCCcEEEEEE----eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 46889999999999999987 788888899988655554 567889999999999999999999988877653
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~ 173 (430)
...+.++.+.+.. ..+++++.+|.+.+|++.... ..+..+. .|...|.+++|+| +
T Consensus 97 --------~~~v~~~~~s~~~--------~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~-~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 97 --------PDYIRSIAVHPTK--------PYVLSGSDDLTVKLWNWENNW-------ALEQTFE-GHEHFVMCVAFNPKD 152 (814)
T ss_dssp --------SSCEEEEEECSSS--------SEEEEEETTSEEEEEEGGGTS-------EEEEEEE-CCSSCEEEEEEETTE
T ss_pred --------CCCEEEEEEeCCC--------CEEEEEcCCCEEEEEECCCCc-------eEEEEEc-CCCCcEEEEEEEcCC
Confidence 4578877776654 389999999999999986432 1333443 6778999999999 8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
++.|++++.||.|++||+.++.....+..+. ...+.+++|.+.+++.+|++++.||.|++||+.++. ++..
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~ 223 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT 223 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-EEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEE
Confidence 8999999999999999998877766655432 256889999433499999999999999999999865 5788
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe-EEEEeCCCcEEEEECCC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIKT 332 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg~i~iwd~~~ 332 (430)
+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ...+.+++|+|++.. +++++.|+.+.+|++..
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 8899999999999999999999999999999999999999999988 889999999999863 24444567789998765
Q ss_pred CceeeEEEee----------------------------------------ccccceEEeeeccccccccccCCCCceEec
Q 014154 333 RQLLSAVFLK----------------------------------------QHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 333 ~~~~~~~~~~----------------------------------------~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~ 372 (430)
......+... .+....+.+++|+|+|++++.+.++.+.+|
T Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~ 382 (814)
T 3mkq_A 303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIY 382 (814)
T ss_dssp CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEE
T ss_pred CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEE
Confidence 4322211000 111223578899999988444448889998
Q ss_pred CCCC
Q 014154 373 NGND 376 (430)
Q Consensus 373 ~~~~ 376 (430)
+...
T Consensus 383 ~~~~ 386 (814)
T 3mkq_A 383 TALA 386 (814)
T ss_dssp ETTT
T ss_pred ECcc
Confidence 8654
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.7e-34 Score=262.03 Aligned_cols=279 Identities=11% Similarity=0.089 Sum_probs=223.8
Q ss_pred cceeeecCCCceEEEEccCCCCCcce--eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPK--VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
..+++++.||.|++|++..+ + .+..+.+|...+..++ + +|++++|++++.||.|++||+.+++....+.
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~-----~~~~~~~~~~h~~~v~~~~--~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 91 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGN-----KWVQVHELKEHNGQVTGVD--W--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLV 91 (372)
T ss_dssp SEEEEECSSSEEEEEEEETT-----EEEEEEEEECCSSCEEEEE--E--ETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred CEEEEEeCCCEEEEEeCCCC-----cEEeeeeecCCCCcccEEE--E--eCCCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence 46788889999999999986 4 7778888988855554 4 5678899999999999999998776544433
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
. ..+...+.++.+.+.. ..+++++.++.+.+|++..... ..........|...|.+++|+|
T Consensus 92 ~------~~~~~~v~~~~~~~~~--------~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 92 I------LRINRAARCVRWAPNE--------KKFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp C------CCCSSCEEEEEECTTS--------SEEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECT
T ss_pred e------ecCCCceeEEEECCCC--------CEEEEEeCCCEEEEEEecCCCc-----ceeeeeeecccCCCeeEEEEcC
Confidence 2 1234577777776543 4899999999999999875431 0113333345678999999999
Q ss_pred CCCEEEEEeCCCeEEEEECC------------------CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154 173 SEKFSLFGGKGVEVNVWDLD------------------KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 234 (430)
++++|++++.|+.|++||+. .++.+..+..+. ..|.+++| +|++.+|++++
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~ 221 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---------GWVHGVCF--SANGSRVAWVS 221 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---------SCEEEEEE--CSSSSEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC---------CeEEEEEE--CCCCCEEEEEe
Confidence 99999999999999999954 556666665543 67999999 89999999999
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC--CeE--E-----------------
Q 014154 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKL--L----------------- 293 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~--~~~--~----------------- 293 (430)
.|+.|++||+++++ ++..+..|...|.+++|+|++.+|++| .|+.|++||+++ ++. +
T Consensus 222 ~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (372)
T 1k8k_C 222 HDSTVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 299 (372)
T ss_dssp TTTEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred CCCEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchh
Confidence 99999999999865 588889999999999999999988887 899999999988 431 0
Q ss_pred -------------------eee-eCCCCCCeEEEEec-CCC---CeEEEEeCCCcEEEEECCCCce
Q 014154 294 -------------------GCF-IGKCSGSIRSIARH-PTL---PIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 294 -------------------~~~-~~~~~~~v~~i~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
..+ .+| ...|++++|+ +++ .+|++|+.||.|++||+.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 300 ERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp HHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 233 366 8899999976 666 8999999999999999987553
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.9e-33 Score=274.67 Aligned_cols=311 Identities=13% Similarity=0.063 Sum_probs=247.5
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCC--CCceeEEeecCCeEEEecCCCC----
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQ--NDPLLAVARKNGLTDILNPLNG---- 85 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p--~g~~l~~g~~dg~i~iwd~~~~---- 85 (430)
|..+++..+.++.|+||++.++ ....+....+.+|... +..+++ +| ++++|++|+.||.|+|||+.++
T Consensus 28 pdg~~l~~~~~~~v~v~~~~~~-~~~~~~~~~~~~h~~~~v~~~~~----sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 28 PTTNAIAYPCGKSAFVRCLDDG-DSKVPPVVQFTGHGSSVVTTVKF----SPIKGSQYLCSGDESGKVIVWGWTFDKESN 102 (615)
T ss_dssp TTTTEEEEEETTEEEEEECCSS-CCSSCSEEEECTTTTSCEEEEEE----CSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred CCCCEEEEecCCeEEEEECCCC-CCccccceEEecCCCceEEEEEE----CcCCCCCEEEEecCCCEEEEEeCCCCcccc
Confidence 3344444344899999999864 1112356678888887 766665 56 8889999999999999999755
Q ss_pred ----cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC----CeeEEEEeeecCccccCCCcceEEe
Q 014154 86 ----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSW 157 (430)
Q Consensus 86 ----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~i~~~ 157 (430)
+.+..+.. +...+.++.+.+.. ..+++++.+ +.+.+|+. . ..+..+
T Consensus 103 ~~~~~~~~~~~~--------~~~~v~~~~~s~~~--------~~l~~~~~~~~~~~~v~~~d~--~--------~~~~~~ 156 (615)
T 1pgu_A 103 SVEVNVKSEFQV--------LAGPISDISWDFEG--------RRLCVVGEGRDNFGVFISWDS--G--------NSLGEV 156 (615)
T ss_dssp EEEEEEEEEEEC--------CSSCEEEEEECTTS--------SEEEEEECCSSCSEEEEETTT--C--------CEEEEC
T ss_pred cccccccchhhc--------ccccEEEEEEeCCC--------CEEEEeccCCCCccEEEEEEC--C--------Ccceee
Confidence 44444433 34578877776544 377777766 56777751 1 134444
Q ss_pred eecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCc---ceeEEEEeecCC-CCEEEE
Q 014154 158 NVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT---WFTSAAFLSIDD-HRKFVA 232 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~-~~~l~s 232 (430)
. .|...|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..+. . .|.+++| +|+ +++|++
T Consensus 157 ~-~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---------~~~~~v~~~~~--~~~~~~~l~~ 224 (615)
T 1pgu_A 157 S-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH---------KQGSFVRDVEF--SPDSGEFVIT 224 (615)
T ss_dssp C-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS---------CTTCCEEEEEE--CSTTCCEEEE
T ss_pred e-cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC---------CCCceEEEEEE--CCCCCCEEEE
Confidence 3 5778999999999997 89999999999999999999988887764 4 7999999 889 999999
Q ss_pred EeCCCcEEEEECCCCCcceEEE-e---ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeE
Q 014154 233 GTNDHQVRLYDTSAQRRPVMSF-D---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIR 305 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~-~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~ 305 (430)
++.|+.|++||+.+++ .+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+..+ ....+.
T Consensus 225 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 225 VGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp EETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred EeCCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 9999999999999866 46677 5 899999999999 9999999999999999999999999888865 136788
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
++.|+ ++.++++++.||.|++||+.+++.+.. +.+| ...|.+++| |+ +++++.|+.|++|+..
T Consensus 303 ~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~--~~~~-~~~v~~~~~-~~--l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 303 GVVAT-GNGRIISLSLDGTLNFYELGHDEVLKT--ISGH-NKGITALTV-NP--LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEE-ETTEEEEEETTSCEEEEETTEEEEEEE--ECCC-SSCEEEEET-TT--TEEEETTSCEEETTTT
T ss_pred EEEeC-CCCeEEEEECCCCEEEEECCCCcEEEE--EeCC-CCCEEEEEe-cC--cEEECCCCeEEEEEch
Confidence 88886 889999999999999999999888876 5666 455688888 77 7777888888888764
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-33 Score=285.70 Aligned_cols=292 Identities=15% Similarity=0.183 Sum_probs=244.6
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
++...+.+|...+. +++| +|+|++||+|+.||.|+|||+.+++.+..+..+ ...+.++.|.+..
T Consensus 4 ~~~~~~~~h~~~v~--~i~~--sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~~---- 67 (814)
T 3mkq_A 4 DIKKTFSNRSDRVK--GIDF--HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT--------ETPVRAGKFIARK---- 67 (814)
T ss_dssp CCEEEEEEECSCEE--EEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEEEEEEEGGG----
T ss_pred ccceeeecCCCceE--EEEE--CCCCCEEEEEeCCCEEEEEECCCCceEEEEecC--------CCcEEEEEEeCCC----
Confidence 34566788888855 4555 778999999999999999999999888877653 4578888877654
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeE
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIW 198 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~ 198 (430)
..+++++.+|.+.+|++.... .+..+. .|...|.+++|+|++++|++++.||.|++||+.++ ....
T Consensus 68 ----~~l~~~~~dg~i~vw~~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 134 (814)
T 3mkq_A 68 ----NWIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (814)
T ss_dssp ----TEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred ----CEEEEEeCCCeEEEEECCCCc--------EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 489999999999999975332 444444 57889999999999999999999999999999876 5555
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecC--CCCEEE
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEP--DSFNIY 274 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp--~~~~l~ 274 (430)
.+..+. ..|.+++| +| ++..|++++.||.|++||+.++.. ...+.. +...+.+++|+| ++.+|+
T Consensus 135 ~~~~~~---------~~v~~~~~--~p~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 135 TFEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEECCS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEcCCC---------CcEEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 555554 67999999 77 788999999999999999988664 445544 448999999999 999999
Q ss_pred EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec
Q 014154 275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 354 (430)
+++.||.|++||+++++.+..+.+| ...|.+++|+|++.+|++++.||.|++||+.+++.+.. +..+ ...+++++|
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~~-~~~v~~~~~ 278 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--LNVG-LERSWCIAT 278 (814)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE--ECCS-SSSEEEEEE
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--eecC-CCcEEEEEE
Confidence 9999999999999999999999998 88999999999999999999999999999999998887 4455 445799999
Q ss_pred ccccc--ccccCCCCceEecCCCC
Q 014154 355 ADKEV--ANAAADAPMLEIQNGND 376 (430)
Q Consensus 355 s~~g~--~~~~~~d~~i~~~~~~~ 376 (430)
+|+|. +++++.++.+.+|+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 279 HPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp CTTCGGGEEEEEETTEEEEEECSC
T ss_pred ccCCCceEEEEEeCCCEEEEEcCC
Confidence 99987 36677788888887654
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-35 Score=270.92 Aligned_cols=244 Identities=9% Similarity=0.043 Sum_probs=188.2
Q ss_pred CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC--cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154 48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
+...|.+ +.+ +|+|++||+|+.||.|+|||+.++ +.+..+.+ +...+.++.+.+.. ..
T Consensus 10 ~~~~v~~--~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~s~~~--------~~ 69 (377)
T 3dwl_C 10 LPKPSYE--HAF--NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD--------HDKIVTCVDWAPKS--------NR 69 (377)
T ss_dssp CSSCCSC--CEE--CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC--------CSSCEEEEEECTTT--------CC
T ss_pred CCCcEEE--EEE--CCCCCEEEEecCCCEEEEEEccCCceEEEEEEec--------CCceEEEEEEeCCC--------CE
Confidence 4456544 444 678889999999999999999877 55555543 45688888876654 48
Q ss_pred EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEeeCC
Q 014154 126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKP 202 (430)
Q Consensus 126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~ 202 (430)
+++++.++.+++|++..... -..+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++. ...+..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGT-----WKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp EEEEETTSSEEEC------C-----CCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred EEEEeCCCeEEEEEcCCCCc-----eeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 99999999999999865420 0112222 35778999999999999999999999999999988763 455544
Q ss_pred -CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC-----------------CcceEEEeecCCCeEEE
Q 014154 203 -PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----------------RRPVMSFDFRETPIKAV 264 (430)
Q Consensus 203 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~i~~~ 264 (430)
|. ..|.+++| +|++.+|++++.|+.|++||+... ..++..+ .|...|.++
T Consensus 144 ~h~---------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 144 PLR---------STILSLDW--HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp SCC---------SCEEEEEE--CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred ccC---------CCeEEEEE--cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 33 77999999 899999999999999999998531 1234445 788999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEEccCCeE----EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 265 AEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 265 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
+|+|++++|++++.|+.|++||+++++. +..+.+| ...|.+++|+|++.+|++++.|+.+ +|+..
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999999999999999887 7888888 8899999999999999998876655 77664
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.5e-34 Score=268.00 Aligned_cols=270 Identities=14% Similarity=0.219 Sum_probs=220.4
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
....+++|+.||.|++||+.++ +....+.+|...+.++ .+ ++++|++|+.||.|++||+.+++.+..+.
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l--~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCL--QY----DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEEEE--EC----CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeCCCC-----eEEEEEcCCCCcEEEE--EE----CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 4467899999999999999987 7788889999885544 44 45699999999999999999998887776
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI 172 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 172 (430)
.+ ...+.++.+. . +.+++++.+|.+.+|++..... .........|...|.++++
T Consensus 211 ~h--------~~~v~~l~~~---~-------~~l~s~s~dg~i~vwd~~~~~~------~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 211 HH--------CEAVLHLRFN---N-------GMMVTCSKDRSIAVWDMASPTD------ITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp CC--------CSCEEEEECC---T-------TEEEEEETTSCEEEEECSSSSC------CEEEEEECCCSSCEEEEEE--
T ss_pred CC--------CCcEEEEEEc---C-------CEEEEeeCCCcEEEEeCCCCCC------ceeeeEecCCCCcEEEEEe--
Confidence 53 4477766653 2 5899999999999999864331 0111223367789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
++++|++|+.||.|++||+.+++.+..+..+. ..|.++.| ++.+|++|+.||.|++||++++. ++.
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~g~~dg~i~iwd~~~~~-~~~ 330 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGA-CLR 330 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCC-EEE
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---------CcEEEEEe----CCCEEEEEeCCCeEEEEECCCCC-EEE
Confidence 78899999999999999999999988887765 67888888 46899999999999999999865 588
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe---------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
.+.+|...|.+++| ++.+|++|+.||.|++||+++++ ++..+.+| ...|.+++| ++.+|++++.||
T Consensus 331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~Dg 405 (435)
T 1p22_A 331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF--DEFQIVSSSHDD 405 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE--CSSCEEECCSSS
T ss_pred EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe--CCCEEEEEeCCC
Confidence 89999999999999 67899999999999999998766 78888888 899999999 788899999999
Q ss_pred cEEEEECCCCceeeE
Q 014154 324 YLRFWDIKTRQLLSA 338 (430)
Q Consensus 324 ~i~iwd~~~~~~~~~ 338 (430)
.|++||+.+......
T Consensus 406 ~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 406 TILIWDFLNDPAAQA 420 (435)
T ss_dssp EEEEEC---------
T ss_pred EEEEEECCCCCCccc
Confidence 999999988766554
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-35 Score=262.84 Aligned_cols=250 Identities=13% Similarity=0.101 Sum_probs=193.7
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS 123 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 123 (430)
.+.+|...|..++| +|+|++||+|+.|++|+|||+.++...
T Consensus 8 ~~~~H~~~V~~v~~----s~~g~~lasgs~D~~v~lwd~~~~~~~----------------------------------- 48 (316)
T 3bg1_A 8 VDTSHEDMIHDAQM----DYYGTRLATCSSDRSVKIFDVRNGGQI----------------------------------- 48 (316)
T ss_dssp ------CCEEEEEE----CGGGCEEEEEETTTEEEEEEEETTEEE-----------------------------------
T ss_pred ecccccCeEEEeeE----cCCCCEEEEEeCCCeEEEEEecCCCcE-----------------------------------
Confidence 45678888665555 567889999999999999997543210
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe--eeEe
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE--KIWT 199 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~--~~~~ 199 (430)
+ +..+ ..|...|.+++|++ ++++|++|+.|++|++||++++. ....
T Consensus 49 --~---------------------------~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 49 --L---------------------------IADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp --E---------------------------EEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred --E---------------------------EEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence 0 0011 14667889999976 48999999999999999998763 4555
Q ss_pred eCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCCc--ceEEEeecCCCeEEEEecCC------
Q 014154 200 AKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPD------ 269 (430)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~sp~------ 269 (430)
+..|. ..|.+++| +|+ +.+|++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 99 ~~~h~---------~~V~~v~~--~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 99 HAGHD---------SSVNSVCW--APHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp ECCCS---------SCCCEEEE--CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred ccCCC---------CceEEEEE--CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 55554 67999999 665 78999999999999999987532 13445678889999999997
Q ss_pred -----------CCEEEEEeCCCcEEEEEccCC---eEEeeeeCCCCCCeEEEEecCCC----CeEEEEeCCCcEEEEECC
Q 014154 270 -----------SFNIYIGNGSGDLASVDIRTG---KLLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 270 -----------~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~----~~l~s~~~dg~i~iwd~~ 331 (430)
+++|++|+.|+.|++||++.. +++..+.+| ...|.+++|+|++ .+|++++.|++|+||++.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 478999999999999999765 467788888 8999999999986 789999999999999998
Q ss_pred CCc---eeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 332 TRQ---LLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 332 ~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+.. ..... +.+| ...|++++|+|+|.+ ++++.|+.|++|+...
T Consensus 247 ~~~~~~~~~~~-~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 247 DASSNTWSPKL-LHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp STTCCCCBCCE-EEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred Cccccchhhhh-hhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 631 11111 3445 556899999999998 8899999999998753
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.9e-33 Score=263.29 Aligned_cols=294 Identities=12% Similarity=0.141 Sum_probs=230.8
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
....+.+|...+. .++.+ ++++|++|+.||.|++||+.+++.+..+.+ +...+.++.+.+.
T Consensus 113 ~~~~l~~h~~~v~-~~~~~----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~--------h~~~V~~l~~~~~------ 173 (464)
T 3v7d_B 113 QRTTLRGHMTSVI-TCLQF----EDNYVITGADDKMIRVYDSINKKFLLQLSG--------HDGGVWALKYAHG------ 173 (464)
T ss_dssp EEEEEECCSSSCE-EEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECC--------CSSCEEEEEECST------
T ss_pred ceEEEcCCCCCcE-EEEEE----CCCEEEEEcCCCcEEEEECCCCcEEEEEeC--------CCcCEEEEEEcCC------
Confidence 4557788888752 24444 346899999999999999999998887765 3458888777432
Q ss_pred ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc--CCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~ 198 (430)
+.+++++.+|.+.+|++.... .+..+. .|...|.+++|+ +++++|++++.|+.|++||+.++....
T Consensus 174 ---~~l~s~s~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 174 ---GILVSGSTDRTVRVWDIKKGC--------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp ---TEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred ---CEEEEEeCCCCEEEEECCCCc--------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 489999999999999975332 444444 578899999998 578999999999999999998765432
Q ss_pred eeCCCCCC--------------CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEE
Q 014154 199 TAKPPPKN--------------SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV 264 (430)
Q Consensus 199 ~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 264 (430)
........ .....|...+.++. +++.+|++++.|+.|++||+++++ ++..+.+|...|.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~ 316 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYST 316 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEE
Confidence 21110000 00011224455553 478899999999999999999855 588889999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc
Q 014154 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH 344 (430)
Q Consensus 265 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 344 (430)
+|+|++++|++|+.|+.|++||+++++++..+.+| ...|.++.|+ +.+|++++.||.|++||+.++...... +
T Consensus 317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----~ 389 (464)
T 3v7d_B 317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----H 389 (464)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----E
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----c
Confidence 99999999999999999999999999999999998 8999999997 579999999999999999988776553 2
Q ss_pred ccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 345 LNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 345 ~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
....+..++|++++.+++++.|+.|++|+....
T Consensus 390 ~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g 422 (464)
T 3v7d_B 390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSG 422 (464)
T ss_dssp CTTCCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred CCCCccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence 244567889999999954455999999998764
No 82
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=257.70 Aligned_cols=282 Identities=13% Similarity=0.087 Sum_probs=212.1
Q ss_pred eeeecC---CCceEEEEccCCCCCcceeeee-cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-cccee
Q 014154 17 ALTFDS---LGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAI 91 (430)
Q Consensus 17 l~t~~~---dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~ 91 (430)
+++|+. ||.|+||++..+ +.... ..+|...+..++++.+ .|+|++|++|+.||.|++||+.+++ .+..+
T Consensus 34 ~~~~s~~~~d~~v~iw~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 107 (357)
T 3i2n_A 34 VTMGNFARGTGVIQLYEIQHG-----DLKLLREIEKAKPIKCGTFGAT-SLQQRYLATGDFGGNLHIWNLEAPEMPVYSV 107 (357)
T ss_dssp EEEEC--CCCEEEEEEEECSS-----SEEEEEEEEESSCEEEEECTTC-CTTTCCEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEecCccCCCcEEEEEeCCCC-----cccceeeecccCcEEEEEEcCC-CCCCceEEEecCCCeEEEEeCCCCCccEEEE
Confidence 445655 999999999986 33222 2257777555444331 1227899999999999999999887 66665
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC---CCceEEE
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAFS 168 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~---~~~i~~~ 168 (430)
.. +...+.++.+.+.-... .....+++++.++.+.+|++..... .+..+.... ...+.++
T Consensus 108 ~~--------~~~~v~~~~~~~~~~~s--~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 108 KG--------HKEIINAIDGIGGLGIG--EGAPEIVTGSRDGTVKVWDPRQKDD-------PVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp CC--------CSSCEEEEEEESGGGCC---CCCEEEEEETTSCEEEECTTSCSS-------CSEEECCCTTSCCCCEEEE
T ss_pred Ee--------cccceEEEeeccccccC--CCccEEEEEeCCCeEEEEeCCCCCC-------cceeccccCCCCCCceEEE
Confidence 54 34578877664310000 0115899999999999999764321 344443222 2378888
Q ss_pred E----EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC---CCCEEEEEeCCCcEEE
Q 014154 169 K----VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID---DHRKFVAGTNDHQVRL 241 (430)
Q Consensus 169 ~----~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~i 241 (430)
+ |+|++++|++++.|+.|++||+++++...... + ...|.+++| +| ++.+|++++.||.|++
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~---------~~~v~~~~~--~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I---------KNGVCSLEF--DRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C---------SSCEEEEEE--SCSSSSCCEEEEEESTTEEEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-C---------CCceEEEEc--CCCCCCCCEEEEECCCCeEEE
Confidence 8 78899999999999999999999988755432 2 267999999 78 8999999999999999
Q ss_pred EECCCCCcceEE-----EeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCC-------------------eEEeee
Q 014154 242 YDTSAQRRPVMS-----FDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG-------------------KLLGCF 296 (430)
Q Consensus 242 wd~~~~~~~~~~-----~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~-------------------~~~~~~ 296 (430)
||++++.. ... +..|...|++++|+|++. +|++++.||.|++||++++ +.+..+
T Consensus 239 ~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 239 FDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred EeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 99987442 333 348999999999999998 8999999999999999854 467778
Q ss_pred eCCCCCCeEEEEecCCCCeEE-EEeCCCcEEEEECCCCce
Q 014154 297 IGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 297 ~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~iwd~~~~~~ 335 (430)
.+| ...|++++|+|++++|+ +++.||.|+|||+.+.+.
T Consensus 318 ~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 318 TLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 888 89999999999999998 899999999999987654
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-33 Score=262.06 Aligned_cols=282 Identities=14% Similarity=0.096 Sum_probs=218.1
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++++.||.|+||++... ......+..+.+|...|. ++.| +| ++++|++|+.||.|+|||+.++........
T Consensus 49 ~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h~~~V~--~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~- 122 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKT-GRVDKNVPLVCGHTAPVL--DIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE- 122 (402)
T ss_dssp EEBCCSSSCCEEEEETTCC-EECCTTCCCBCCCSSCEE--EEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS-
T ss_pred EEEEEcCCCEEEEEECccC-CCCCCCCceEecCCCCEE--EEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCccccCC-
Confidence 3446889999999999663 122234456778988855 4445 66 778999999999999999977653221100
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
.+..+. .|...|.+++|+|++
T Consensus 123 ----------------------------------------------------------~~~~~~-~h~~~v~~~~~~p~~ 143 (402)
T 2aq5_A 123 ----------------------------------------------------------PVITLE-GHTKRVGIVAWHPTA 143 (402)
T ss_dssp ----------------------------------------------------------CSEEEE-CCSSCEEEEEECSSB
T ss_pred ----------------------------------------------------------ceEEec-CCCCeEEEEEECcCC
Confidence 111222 466889999999997
Q ss_pred -CEEEEEeCCCeEEEEECCCCeeeEee--CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154 175 -KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 175 -~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
++|++++.|+.|++||+.+++.+..+ ..+. ..|.+++| +|++.+|++++.|+.|++||++++. .+
T Consensus 144 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~-~~ 211 (402)
T 2aq5_A 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP---------DTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGT-VV 211 (402)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECTTTCC---------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTE-EE
T ss_pred CCEEEEEcCCCEEEEEECCCCCccEEEecCCCC---------CceEEEEE--CCCCCEEEEEecCCcEEEEeCCCCc-ee
Confidence 79999999999999999999998888 4544 77999999 8899999999999999999999865 46
Q ss_pred EEE-eecCCC-eEEEEecCCCCEEEEE---eCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEE-EeCCCc
Q 014154 252 MSF-DFRETP-IKAVAEEPDSFNIYIG---NGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIAS-CGLDSY 324 (430)
Q Consensus 252 ~~~-~~~~~~-i~~~~~sp~~~~l~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg~ 324 (430)
..+ ..|... +.++.|+|++.+|++| +.|+.|++||+++++. +......+...+.+++|+|++.+|++ ++.||.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 666 678765 8999999999999999 7899999999998764 33333222678999999999999865 557999
Q ss_pred EEEEECCCCce-eeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 325 LRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 325 i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
|++||+.+++. +..+....+ ...+.+++|+|++.++++ .++.+++|+...
T Consensus 292 i~i~d~~~~~~~~~~l~~~~~-~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 292 IRYFEITSEAPFLHYLSMFSS-KESQRGMGYMPKRGLEVN-KCEIARFYKLHE 342 (402)
T ss_dssp EEEEEECSSTTCEEEEEEECC-SSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred EEEEEecCCCcceEeeccccc-CCcccceEEeccccccee-cceeEEEEEcCC
Confidence 99999999884 444322222 456799999999998443 456999999865
No 84
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3e-33 Score=258.48 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=210.0
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeec--CCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCccccee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~ 91 (430)
..+++|+.||.|+|||+..+ +....+ .+|...+.. +.| +| ++++|++++.||.|++||+.. ..+..+
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~--~~~--~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~ 156 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQ-----NKTSFIQGMGPGDAITG--MKF--NQFNTNQLFVSSIRGATTLRDFSG-SVIQVF 156 (383)
T ss_dssp TEEEEEEBTSCEEEEETTST-----TCEEEECCCSTTCBEEE--EEE--ETTEEEEEEEEETTTEEEEEETTS-CEEEEE
T ss_pred CEEEEEcCCCeEEEEeCCCc-----ccceeeecCCcCCceeE--EEe--CCCCCCEEEEEeCCCEEEEEECCC-CceEEE
Confidence 47999999999999999975 333333 357777554 444 55 568999999999999999974 444444
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
..+ ..+...+.++.+.+.. ..+++++.++.+.+|++.. ..+..+. .|...|.+++|+
T Consensus 157 ~~~-----~~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~i~d~~~---------~~~~~~~-~h~~~v~~~~~~ 213 (383)
T 3ei3_B 157 AKT-----DSWDYWYCCVDVSVSR--------QMLATGDSTGRLLLLGLDG---------HEIFKEK-LHKAKVTHAEFN 213 (383)
T ss_dssp ECC-----CCSSCCEEEEEEETTT--------TEEEEEETTSEEEEEETTS---------CEEEEEE-CSSSCEEEEEEC
T ss_pred ecc-----CCCCCCeEEEEECCCC--------CEEEEECCCCCEEEEECCC---------CEEEEec-cCCCcEEEEEEC
Confidence 432 1233567777776544 4899999999999999731 1444444 578899999999
Q ss_pred CCCC-EEEEEeCCCeEEEEECCC----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECC
Q 014154 172 ISEK-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 172 ~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 245 (430)
|+++ +|++++.|+.|++||+.+ +..+..+ .+. ..|.+++| +| ++.+|++++.|+.|++||++
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~---------~~v~~~~~--s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE---------KPVNAAYF--NPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS---------SCEEEEEE--CTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC---------CceEEEEE--cCCCCCEEEEEcCCCcEEEEECC
Confidence 9998 999999999999999987 4455544 232 77999999 88 99999999999999999999
Q ss_pred CCCcceEEEeecC-----------------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-CCCCeEEE
Q 014154 246 AQRRPVMSFDFRE-----------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI 307 (430)
Q Consensus 246 ~~~~~~~~~~~~~-----------------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i 307 (430)
++.. ...+..|. ..+..++|+|++++ +++.|+.|++||+.+++++..+.++ +...+..+
T Consensus 282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~ 358 (383)
T 3ei3_B 282 DWSK-PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN 358 (383)
T ss_dssp BTTS-CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEE
T ss_pred CCcc-ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEE
Confidence 8664 44454442 34455677777766 7779999999999999999999874 25677888
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCC
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
+|+|++.+|++++ |+.|+|||+++
T Consensus 359 ~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 359 KFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEecCccEEEEec-CCcEEEEecCC
Confidence 9999999999997 99999999874
No 85
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-34 Score=268.76 Aligned_cols=290 Identities=13% Similarity=0.088 Sum_probs=208.0
Q ss_pred cCCCCCCC---cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC
Q 014154 7 LECPGCPP---LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL 83 (430)
Q Consensus 7 ~~~~~~~~---~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~ 83 (430)
++|....| ..|++|+.||.|+|||+..+. ......+.+|...|..++|++ .++++|++|+.||+|+|||+.
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~---~~~~~~~~gH~~~V~~l~f~p---~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD---KPTFIKGIGAGGSITGLKFNP---LNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCS---CCEEECCCSSSCCCCEEEECS---SCTTEEEEECSSSCEEEEETT
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC---ceeEEEccCCCCCEEEEEEeC---CCCCEEEEEeCCCEEEEeecc
Confidence 44555433 468899999999999998741 123445678999977666643 156799999999999999997
Q ss_pred CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
++.. ..+.... .....+.++.+.+.. ..+++++.+|.+.+|++... .+..+. .|..
T Consensus 196 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~~--------~~l~~g~~dg~i~~wd~~~~---------~~~~~~-~h~~ 251 (435)
T 4e54_B 196 GNIL-RVFASSD-----TINIWFCSLDVSASS--------RMVVTGDNVGNVILLNMDGK---------ELWNLR-MHKK 251 (435)
T ss_dssp SCEE-EEEECCS-----SCSCCCCCEEEETTT--------TEEEEECSSSBEEEEESSSC---------BCCCSB-CCSS
T ss_pred CCce-eEEeccC-----CCCccEEEEEECCCC--------CEEEEEeCCCcEeeeccCcc---------eeEEEe-cccc
Confidence 5543 3332211 111234445554433 48999999999999997522 222232 5678
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 164 TIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 164 ~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
.|.+++|+|++. +|++++.|+.|++||+.+.+....+.. ...|...|++++| +|++.+|++++.|+.|++|
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~------~~~h~~~v~~~~~--spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY------SLPHRHPVNAACF--SPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB------CCBCSSCEEECCB--CTTSSEEEEEESSSCEEEE
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE------eeeccccccceeE--CCCCCeeEEEcCCCEEEEE
Confidence 999999999875 788999999999999987654433221 1123478999999 8999999999999999999
Q ss_pred ECCCCCcceEEEeecCC------CeEEEEecCCCCEEEEEe------------CCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 243 DTSAQRRPVMSFDFRET------PIKAVAEEPDSFNIYIGN------------GSGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~------~i~~~~~sp~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
|+.++.. ...+..|.. .+..+.|+|++.++++++ .++.|++||..+++++..+..+|...|
T Consensus 324 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v 402 (435)
T 4e54_B 324 SASQWDC-PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI 402 (435)
T ss_dssp ESSSSSS-EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCC
T ss_pred ECCCCcc-ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcE
Confidence 9998664 445544432 233456777777777664 235799999999999988876558888
Q ss_pred EEE-EecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154 305 RSI-ARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 305 ~~i-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 336 (430)
.++ +|+|+|.+|++|+ |+.|+||++++++..
T Consensus 403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 403 SSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 887 6999999999876 889999999988753
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.9e-33 Score=259.76 Aligned_cols=272 Identities=15% Similarity=0.238 Sum_probs=222.0
Q ss_pred CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+|... +.++.+ ++++|++|+.||.|++||+.+++.+..+.+| ...+.++.+ .. ..+
T Consensus 131 ~~~~~--v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--------~~~v~~l~~---~~-------~~l 186 (435)
T 1p22_A 131 ETSKG--VYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGH--------TGSVLCLQY---DE-------RVI 186 (435)
T ss_dssp SSCCC--EEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCC--------SSCEEEEEC---CS-------SEE
T ss_pred CCCCc--EEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC--------CCcEEEEEE---CC-------CEE
Confidence 34444 445544 5679999999999999999999888777653 457777766 22 589
Q ss_pred EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EeeCCC
Q 014154 127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPP 203 (430)
Q Consensus 127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~ 203 (430)
++++.+|.+.+|++.... .+..+. .|...|.+++|+ ++++++|+.||.|++||+.++... ..+..+
T Consensus 187 ~sg~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGE--------MLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp EEEETTSCEEEEESSSCC--------EEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred EEEcCCCeEEEEECCCCc--------EEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence 999999999999986432 444444 577889999996 469999999999999999887654 444444
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
. ..|.+++| ++.+|++|+.||.|++||++++. ++..+.+|...|.++.|+ +.+|++|+.||.|+
T Consensus 256 ~---------~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 256 R---------AAVNVVDF----DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR 319 (435)
T ss_dssp S---------SCEEEEEE----ETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred C---------CcEEEEEe----CCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence 3 67899988 67899999999999999999865 588899999999999985 67999999999999
Q ss_pred EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc---------eeeEEEeeccccceEEeeec
Q 014154 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ---------LLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~ 354 (430)
+||+++++++..+.+| ...|.+++| ++.+|++|+.||.|++||+.++. .+.. +.+| ...|.+++|
T Consensus 320 iwd~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~h-~~~v~~l~~ 393 (435)
T 1p22_A 320 LWDIECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT--LVEH-SGRVFRLQF 393 (435)
T ss_dssp EEETTTCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE--ECCC-SSCCCCEEE
T ss_pred EEECCCCCEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheee--ccCC-CCCeEEEEe
Confidence 9999999999999998 899999999 78899999999999999998766 5655 5677 455789999
Q ss_pred cccccc-cccCCCCceEecCCCCC
Q 014154 355 ADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 355 s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
++.+ ++++.||.|++|+....
T Consensus 394 --~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 394 --DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp --CSSCEEECCSSSEEEEEC----
T ss_pred --CCCEEEEEeCCCEEEEEECCCC
Confidence 5666 99999999999998764
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=256.36 Aligned_cols=324 Identities=9% Similarity=0.027 Sum_probs=212.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeee---------ecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCC
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVE---------RWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~ 84 (430)
..+++|+.||.|++|++..+.. ...... ...+|...+.. +.| +| ++.+|++++.||.|++||+.+
T Consensus 57 ~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~l~s~~~d~~i~iwd~~~ 131 (408)
T 4a11_B 57 RYMLSGGSDGVIVLYDLENSSR-QSYYTCKAVCSIGRDHPDVHRYSVET--VQW--YPHDTGMFTSSSFDKTLKVWDTNT 131 (408)
T ss_dssp CEEEEEETTSCEEEEECCCCSS-SSCEEECEEEEECTTCTTCCSSCEEE--EEE--CTTCTTCEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEECCCCcc-cceEeccccccccccccccCCCcEEE--EEE--ccCCCcEEEEEeCCCeEEEeeCCC
Confidence 5789999999999999998621 111110 01247777554 444 55 667999999999999999998
Q ss_pred CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc
Q 014154 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT 164 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~ 164 (430)
++....+.. ...+..+.+.+..... ..+++++.++.+.+|++.... .+..+. .|...
T Consensus 132 ~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~ 188 (408)
T 4a11_B 132 LQTADVFNF---------EETVYSHHMSPVSTKH-----CLVAVGTRGPKVQLCDLKSGS--------CSHILQ-GHRQE 188 (408)
T ss_dssp TEEEEEEEC---------SSCEEEEEECSSCSSC-----CEEEEEESSSSEEEEESSSSC--------CCEEEC-CCCSC
T ss_pred CccceeccC---------CCceeeeEeecCCCCC-----cEEEEEcCCCeEEEEeCCCcc--------eeeeec-CCCCc
Confidence 887766653 2356666666543311 488999999999999986432 344444 57789
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-eeEeeCCCCCC------CCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154 165 IAFSKVDISEK-FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKN------SLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 165 i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 236 (430)
|.+++|+|++. +|++++.||.|++||++++. .+..+..+... .....+...|.+++| +|++.+|++++.|
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d 266 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF--TSDGLHLLTVGTD 266 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE--CTTSSEEEEEETT
T ss_pred EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE--cCCCCEEEEecCC
Confidence 99999999988 58899999999999998765 33433222111 111235578999999 8999999999999
Q ss_pred CcEEEEECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154 237 HQVRLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~ 311 (430)
+.|++||+.++.. ...+..+ ...+........+..+++++.++.|++||+.+++++..+.+| ...|++++|+|
T Consensus 267 g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~ 344 (408)
T 4a11_B 267 NRMRLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQS 344 (408)
T ss_dssp SCEEEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEET
T ss_pred CeEEEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcC
Confidence 9999999998654 2222221 112222223344567777788999999999999999999998 89999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc--ccccccCCCCceEecCCCC
Q 014154 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK--EVANAAADAPMLEIQNGND 376 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~~~~~~d~~i~~~~~~~ 376 (430)
++.+|++++.||.|++||+.+++.+.... ... ....+.+. ..+.+.+.++.+++|+.+.
T Consensus 345 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 345 NFQELYSGSRDCNILAWVPSLYEPVPDDD--ETT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred CCCEEEEECCCCeEEEEeCCCCCccCCCC--ceE----eccccccccceeecccCccCceeecCCcc
Confidence 99999999999999999999988876531 111 12233332 2337778899999998764
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.3e-32 Score=251.58 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=221.6
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
++||+|. |++|+|||+.+++.+..+..+ .+.+.|.++.|.+.. ..+++++.||.+.+|++....
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg--------~~lasgs~Dg~v~iWd~~~~~- 180 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEG--------NYLAVGTSSAEVQLWDVQQQK- 180 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE-
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCC--------CEEEEEECCCeEEEEEcCCCc-
Confidence 5777774 899999999999987776642 344578888887654 489999999999999976432
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
.++.+. .|...+.+++++ +.+|++|+.|+.+++||..... .+..+..|. ..+..+.+ .
T Consensus 181 -------~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~---------~~~~~~~~--~ 239 (420)
T 4gga_A 181 -------RLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---------QEVCGLRW--A 239 (420)
T ss_dssp -------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEEE--C
T ss_pred -------EEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccc---------cceeeeee--c
Confidence 444444 577788887774 6899999999999999987643 445555554 66889999 8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCC-EEEEE--eCCCcEEEEEccCCeEEeeeeC
Q 014154 225 DDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSF-NIYIG--NGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 225 ~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~-~l~~~--~~d~~i~iwd~~~~~~~~~~~~ 298 (430)
|++.++++++.|+.|++|+...++. .+.....|...|.+++|+|.+. +++++ +.|+.|++||+++++++..+..
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~ 319 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence 9999999999999999999987542 3567778899999999999764 45543 4799999999999999988887
Q ss_pred CCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 299 KCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 299 ~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
+ ..+.++.|+|++..+++++ .|+.|+|||+.+++++.. +.+| ...|++++|+|||.+ ++++.|++|++|+..
T Consensus 320 ~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--l~gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 320 H--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGH-TSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp S--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred c--cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE--EcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 5 5789999999999888765 789999999999999988 7788 556799999999998 999999999999986
Q ss_pred CC
Q 014154 376 DT 377 (430)
Q Consensus 376 ~~ 377 (430)
..
T Consensus 395 ~~ 396 (420)
T 4gga_A 395 EL 396 (420)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.5e-33 Score=246.54 Aligned_cols=235 Identities=15% Similarity=0.131 Sum_probs=185.2
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+|++|+.||+|+||++..+ ..+.+..+.+|...|..++|+. .++|++|++|+.||+|+|||+.+++...
T Consensus 22 ~~las~s~D~~v~iw~~~~~---~~~~~~~l~gH~~~V~~v~~s~--~~~g~~l~s~s~D~~v~iWd~~~~~~~~----- 91 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVMIWKEENGRWSQ----- 91 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSS---CBCCCEEECCCSSCEEEEEECC--GGGCSEEEEEETTTEEEEEEBSSSCBCC-----
T ss_pred CEEEEEeCCCEEEEEecCCC---CcEEEEEEccccCCeEEEEecC--CCcCCEEEEEcCCCEEEEEEcCCCceEE-----
Confidence 57999999999999999752 1145678899999977666654 2347899999999999999986543110
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
+. .+ ..|...|.+++|+|+
T Consensus 92 -----------~~------------------------------------------------~~-~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 92 -----------IA------------------------------------------------VH-AVHSASVNSVQWAPHE 111 (297)
T ss_dssp -----------CE------------------------------------------------EE-CCCSSCEEEEEECCGG
T ss_pred -----------EE------------------------------------------------Ee-ecCCCceeEEEeCcCC
Confidence 00 00 134567889999997
Q ss_pred -CCEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCC-------------CCEEEEEeCCC
Q 014154 174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-------------HRKFVAGTNDH 237 (430)
Q Consensus 174 -~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~l~s~~~dg 237 (430)
+.+|++++.|+.|++||++++.. ...+..|. ..|.+++| +|+ +.+|++|+.|+
T Consensus 112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~---------~~v~~~~~--~p~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA---------IGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS---------SCEEEEEE--CCCC------------CCEEEEEETTS
T ss_pred CCcEEEEEECCCcEEEEEecCCCceeeeeeeccc---------CccceEee--cCCcccccccCCCCCCcceEEEEcCCC
Confidence 88999999999999999986532 22333333 67999999 565 57999999999
Q ss_pred cEEEEECCCCCc---ceEEEeecCCCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCe---EEeee--eCCCCCCeEE
Q 014154 238 QVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGK---LLGCF--IGKCSGSIRS 306 (430)
Q Consensus 238 ~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~---~~~~~--~~~~~~~v~~ 306 (430)
.|++||++++.. ....+.+|...|.+++|+|++ .+|++++.|++|++||+++.. ....+ ..| ...|.+
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~ 259 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR 259 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEE
T ss_pred cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEE
Confidence 999999987542 356788999999999999984 899999999999999998743 12223 345 789999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECC
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
++|+|++++|++++.|+.|+||+..
T Consensus 260 ~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 260 ASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999999999999999999999976
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-33 Score=255.23 Aligned_cols=255 Identities=11% Similarity=0.097 Sum_probs=204.1
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+++..+.+|...|.+++ | +|++++||+|+.||.|+|||+..+..
T Consensus 2 ~~~~~~~~h~~~v~~~~--~--s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------- 45 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAV--L--DYYGKRLATCSSDKTIKIFEVEGETH-------------------------------- 45 (379)
T ss_dssp ---CCEEECCCCEEEEE--E--CSSSSEEEEEETTSCEEEEEEETTEE--------------------------------
T ss_pred CccEEecCCcccEEEEE--E--cCCCCEEEEEECCCcEEEEecCCCcc--------------------------------
Confidence 35567788999855554 4 67888999999999999999752210
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE-- 195 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-- 195 (430)
. .+..+ ..|...|.+++|+++ +++|++++.||.|++||+.+++
T Consensus 46 -----~---------------------------~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 46 -----K---------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS 92 (379)
T ss_dssp -----E---------------------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred -----e---------------------------eeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence 0 00011 145678899999876 8999999999999999999886
Q ss_pred eeEeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecC----
Q 014154 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEP---- 268 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp---- 268 (430)
.+..+..+. ..|.+++| +|+ +.+|++++.|+.|++||++.... ....+..|...|.+++|+|
T Consensus 93 ~~~~~~~~~---------~~v~~~~~--~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 93 QIAVHAVHS---------ASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EeeeecCCC---------cceEEEEe--CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 566665554 67999999 777 89999999999999999997632 3556778999999999999
Q ss_pred ---------CCCEEEEEeCCCcEEEEEccCCe----EEeeeeCCCCCCeEEEEecCC---CCeEEEEeCCCcEEEEECCC
Q 014154 269 ---------DSFNIYIGNGSGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPT---LPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 269 ---------~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~i~iwd~~~ 332 (430)
++.+|++++.|+.|++||++++. .+..+.+| ...|.+++|+|+ +.+|++++.||.|++||+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998764 45677777 899999999999 89999999999999999998
Q ss_pred Ccee---eEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 333 RQLL---SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 333 ~~~~---~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+... ..+....+ ...+++++|+|+|.+ ++++.||.|++|+...
T Consensus 241 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 7522 22112224 556899999999998 8889999999999874
No 91
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=251.38 Aligned_cols=292 Identities=16% Similarity=0.137 Sum_probs=227.9
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-Cccc-ceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQRE 117 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (430)
+.+..+.+|...|.+++++.+. ++|++|++|+.||.|+|||+.+ +..+ ..+.. +...+.++.+.+..
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~-- 98 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPT-LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------HTGPVLDVCWSDDG-- 98 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTT-SSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE--------CSSCEEEEEECTTS--
T ss_pred ceeEeccCCCCceEEEEEcCCC-CCceEEEEECCCCcEEEEEcCCCCceeEEEecc--------ccCCEEEEEECcCC--
Confidence 5666788899996666664421 1268999999999999999987 4443 44443 34578888876643
Q ss_pred cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE--cCCCCEEEEEeCCCeEEEEECCCCe
Q 014154 118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV--DISEKFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~ 195 (430)
..+++++.+|.+.+|++.... .+. ...|...|.+++| +|++++|++++.|+.|++||+++++
T Consensus 99 ------~~l~s~~~dg~v~iwd~~~~~--------~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 99 ------SKVFTASCDKTAKMWDLSSNQ--------AIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp ------SEEEEEETTSEEEEEETTTTE--------EEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred ------CEEEEEcCCCcEEEEEcCCCC--------cee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 489999999999999976332 233 2357899999999 8899999999999999999999988
Q ss_pred eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCE--
Q 014154 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFN-- 272 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~-- 272 (430)
.+..+..+ ..+.++.+ ....+++++.++.+.+|+++........+.. +...+.++.+.++...
T Consensus 163 ~~~~~~~~----------~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 163 PMMVLQLP----------ERCYCADV----IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp CSEEEECS----------SCEEEEEE----ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred EEEEEecC----------CCceEEEe----cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence 87777654 34666666 3458888999999999999975543333322 3456677777666554
Q ss_pred --EEEEeCCCcEEEEEccCC---eEEeeeeCCCCC------------CeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 273 --IYIGNGSGDLASVDIRTG---KLLGCFIGKCSG------------SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 273 --l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~------------~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
+++++.|+.|++||++.. ..+..+.+| .. .|++++|+|++.+|++++.||.|++||+.++++
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHSEEEECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CeEEEecCCCcEEEEecCCCCccccceeeeee-ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 999999999999999987 556777776 44 699999999999999999999999999999999
Q ss_pred eeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 336 LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+.. +.+| ...+.+++|+|+|.+ ++++.|+..+.|+...
T Consensus 308 ~~~--~~~~-~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 308 LKT--SEQL-DQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEE--CCCC-SSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEE--ecCC-CCCceEEEECCCCCeEEEEecccccccccccC
Confidence 887 5666 556799999999998 8888888776666443
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-32 Score=250.33 Aligned_cols=282 Identities=12% Similarity=0.052 Sum_probs=225.1
Q ss_pred eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc---cceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
....+|...+..+++ +|++++|++|+.||.|+||++.++.. ...+. .+...+.++.+.+. .
T Consensus 5 ~~~~~h~~~v~~~~~----s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~-~--- 68 (342)
T 1yfq_A 5 QIEQAPKDYISDIKI----IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--------RYKHPLLCCNFIDN-T--- 68 (342)
T ss_dssp ECSSCCSSCEEEEEE----EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--------ECSSCEEEEEEEES-S---
T ss_pred ecccCCCCcEEEEEE----cCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--------ecCCceEEEEECCC-C---
Confidence 334578888555554 55788999999999999999987762 22222 23457888877654 3
Q ss_pred cccCc-eEEEEccCCeeEEEEe-eecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Q 014154 120 SSRSR-TLLTCTTKGKASMRSI-EVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-- 193 (430)
Q Consensus 120 ~~~~~-~~~~~~~~g~~~v~~~-~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-- 193 (430)
. .+++++.+|.+.+|++ ... ....+. . |...|.+++|+| +++|++++.|+.|++||+.+
T Consensus 69 ----~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~ 133 (342)
T 1yfq_A 69 ----DLQIYVGTVQGEILKVDLIGSP---------SFQALT-NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp ----SEEEEEEETTSCEEEECSSSSS---------SEEECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHT
T ss_pred ----CcEEEEEcCCCeEEEEEeccCC---------ceEecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccc
Confidence 5 7899999999999997 533 233333 4 788999999999 99999999999999999976
Q ss_pred -------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-CCcc-eEEEeecCCCeEEE
Q 014154 194 -------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRP-VMSFDFRETPIKAV 264 (430)
Q Consensus 194 -------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~i~~~ 264 (430)
++.+..+. +...|.+++| ++++ +++++.|+.|++||++. +... ......|...|.++
T Consensus 134 ~~~~~~~~~~~~~~~----------~~~~v~~~~~--~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i 199 (342)
T 1yfq_A 134 DGVIAVKNLNSNNTK----------VKNKIFTMDT--NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199 (342)
T ss_dssp TBCEEEEESCSSSSS----------SCCCEEEEEE--CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred cccccccCCeeeEEe----------eCCceEEEEe--cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence 44443333 3377999999 6665 99999999999999997 5442 33445678899999
Q ss_pred EecC-CCCEEEEEeCCCcEEEEEccCC------eEEeeeeCCCCC---------CeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154 265 AEEP-DSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSG---------SIRSIARHPTLPIIASCGLDSYLRFW 328 (430)
Q Consensus 265 ~~sp-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~---------~v~~i~~~~~~~~l~s~~~dg~i~iw 328 (430)
+|+| ++++|++++.||.|++||++.. +....+..| .. .|.+++|+|++.+|++++.||.|++|
T Consensus 200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 9999 9999999999999999999887 777788876 44 89999999999999999999999999
Q ss_pred ECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCc-eEecCC
Q 014154 329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM-LEIQNG 374 (430)
Q Consensus 329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~-i~~~~~ 374 (430)
|+.+++.+.. +.+|....|.+++ |++.+ ++++.|+. .+.|..
T Consensus 279 d~~~~~~~~~--~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 279 NLQTRKKIKN--FAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ETTTTEEEEE--CCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred cCccHhHhhh--hhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 9999998887 5565345578888 99988 99999999 766664
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.5e-32 Score=250.18 Aligned_cols=279 Identities=10% Similarity=0.039 Sum_probs=194.9
Q ss_pred ceEEEEccCCCCCcc---e--eeeecCCCCCCcceeeeeec-----CCCCCceeEEeecCCeEEEecCCCCcccceee-c
Q 014154 25 LIKVIEARGEHGGVP---K--VVERWGDPHSSNCVLAASID-----DSQNDPLLAVARKNGLTDILNPLNGDLRVAIS-N 93 (430)
Q Consensus 25 ~i~vw~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~-----~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~ 93 (430)
.|++|++..+..... . ....+..|...+.++++..+ ..+.+..|++|+.|+.+++|++........+. .
T Consensus 44 ~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~ 123 (365)
T 4h5i_A 44 KLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS 123 (365)
T ss_dssp EEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee
Confidence 599999986522111 1 11245667766544433210 01223344455678889999986554322221 1
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEE--EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL--TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.........+..+..+.+.+.. ..++ +++.++.++||++.... . ++.+.+...|.+++|+
T Consensus 124 ~~~~~~~~~~~~~~~v~fSpDg--------~~la~as~~~d~~i~iwd~~~~~--------~--~~~~~~~~~V~~v~fs 185 (365)
T 4h5i_A 124 VDFDASTNADDYTKLVYISREG--------TVAAIASSKVPAIMRIIDPSDLT--------E--KFEIETRGEVKDLHFS 185 (365)
T ss_dssp ECSSCCCCTTCCEEEEEECTTS--------SCEEEEESCSSCEEEEEETTTTE--------E--EEEEECSSCCCEEEEC
T ss_pred eceeecCCcccCEEEEEEcCCC--------CEEEEEECCCCCEEEEeECCCCc--------E--EEEeCCCCceEEEEEc
Confidence 1111112233445555554433 2444 34468999999975322 2 3344577889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC----cEEEEECCCC
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQ 247 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~ 247 (430)
|++++|++++.+ .+.+|+..++..+....... +...|.+++| +|++.++++++.|+ .+++|++...
T Consensus 186 pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~f--spdg~~l~~~s~d~~~~~~i~~~~~~~~ 255 (365)
T 4h5i_A 186 TDGKVVAYITGS-SLEVISTVTGSCIARKTDFD-------KNWSLSKINF--IADDTVLIAASLKKGKGIVLTKISIKSG 255 (365)
T ss_dssp TTSSEEEEECSS-CEEEEETTTCCEEEEECCCC-------TTEEEEEEEE--EETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred cCCceEEeccce-eEEEEEeccCcceeeeecCC-------CCCCEEEEEE--cCCCCEEEEEecCCcceeEEeecccccc
Confidence 999999999865 57777777766654332211 2367999999 88999999999887 6888998764
Q ss_pred Ccc---eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 248 RRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 248 ~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
... ...+.+|...|++++|+|+|++|++|+.|+.|+|||+++++++..+ .+| ...|++++|+|||++|++||.|+
T Consensus 256 ~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 256 NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEEEEETTS
T ss_pred eecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCC
Confidence 421 3456778899999999999999999999999999999999999886 577 99999999999999999999999
Q ss_pred cEEEEECCC
Q 014154 324 YLRFWDIKT 332 (430)
Q Consensus 324 ~i~iwd~~~ 332 (430)
+|+|||+..
T Consensus 335 tvrvw~ip~ 343 (365)
T 4h5i_A 335 TIHIIKLPL 343 (365)
T ss_dssp EEEEEECCT
T ss_pred eEEEEEcCC
Confidence 999999964
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=264.47 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=215.9
Q ss_pred cceeeecCCCceEEEEccCCCCCc-ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC---CCcccce
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~---~~~~~~~ 90 (430)
..|++|+.||+|+|||+.....+. .+....+ .|...+. ++.+ +|++++|++|+.||.|++||+. +++.+..
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~--~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 151 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVT--QITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF 151 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEE--EEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEE--EEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence 579999999999999997721111 1222233 3777744 5555 6788899999999999999994 5655554
Q ss_pred eecc--CCCCCCC--CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec-CCCce
Q 014154 91 ISNA--GDSGAQP--EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTI 165 (430)
Q Consensus 91 ~~~~--~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i 165 (430)
+..+ ....+.+ +...+.++.+..... ...+++++.++.+.+|++.... .+..+... |...|
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v 217 (437)
T 3gre_A 152 LNCECIRKINLKNFGKNEYAVRMRAFVNEE------KSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAV 217 (437)
T ss_dssp EEEEEEEEEEGGGGSSCCCEEEEEEEECSS------CEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCE
T ss_pred cccceeEEEEccCcccccCceEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCce
Confidence 4431 1222223 445666555443221 1589999999999999986432 45555532 67899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC-CCCCCCCCCcCCcceeEEEEee--cCCCCEEEEEeCCCcEEEE
Q 014154 166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~~dg~i~iw 242 (430)
.+++|+|++++|++|+.||.|++||+++++.+..+. .+. ..|.+++|.+ ++++.+|++|+.|+.|++|
T Consensus 218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 218 SSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH---------APITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC---------EEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC---------CceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 999999999999999999999999999998888765 332 6799997632 3678899999999999999
Q ss_pred ECCCCCcceEEEee--------------------------cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154 243 DTSAQRRPVMSFDF--------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 243 d~~~~~~~~~~~~~--------------------------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 296 (430)
|+++++. +..+.+ |...|++++|+ ++++|++|+.|+.|++||+.+++.+..+
T Consensus 289 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 289 NFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp ETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred EcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 9998653 555553 44568888998 7789999999999999999998877777
Q ss_pred eCC------------------------------------CCCCeEEEEecCC--CCeEEEEeCCCcEEEEE
Q 014154 297 IGK------------------------------------CSGSIRSIARHPT--LPIIASCGLDSYLRFWD 329 (430)
Q Consensus 297 ~~~------------------------------------~~~~v~~i~~~~~--~~~l~s~~~dg~i~iwd 329 (430)
.+| |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 663 4889999999998 78999999999999995
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.5e-32 Score=244.45 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=210.8
Q ss_pred eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc----cceeeccCCCCCCCCCCceEEEEEeec-Cc
Q 014154 42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKR-QR 116 (430)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 116 (430)
...+.+|...|.+++ | +|++++|++|+.||.|++||+.++.. ...+. .+...+.++.+.+. ..
T Consensus 4 ~~~~~gH~~~v~~~~--~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVV--Y--DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--------AHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CCEECCCSSCEEEEE--E--CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--------CCSSCEEEEEECCGGGC
T ss_pred cccCcccccceeEEE--E--cCCCCEEEEeeCCCeEEEEECCCCCCcceecceec--------cCCCcEEEEEEcCCCCC
Confidence 345678988855544 4 67888999999999999999987643 33333 34568888888764 12
Q ss_pred ccccccCceEEEEccCCeeEEEEeeecCccccC-CCcceEEeeecCCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 014154 117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDK 193 (430)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~ 193 (430)
..+++++.++.+.+|++......... ....+..+. .|...|.+++|+|+ +++|++++.|+.|++||+.+
T Consensus 72 -------~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 72 -------RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp -------SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred -------CEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 58999999999999998754321100 002234443 57789999999999 99999999999999999987
Q ss_pred CeeeEeeCCC----CCCCCCCcCCcceeEEEEeecCC---CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEE
Q 014154 194 CEKIWTAKPP----PKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVA 265 (430)
Q Consensus 194 ~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~ 265 (430)
++.+..+... ........+...+.+++| +|+ +.+|++++.++.+.+|+...+.. .+..+.+|...|++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE--CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred hHHhccccccccccccccccCCcccceeEEEe--ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence 6543322110 000001123467899999 676 88999999999998888776442 3566778999999999
Q ss_pred ecCCC----CEEEEEeCCCcEEEEEccCC----------------------------------------------eEEee
Q 014154 266 EEPDS----FNIYIGNGSGDLASVDIRTG----------------------------------------------KLLGC 295 (430)
Q Consensus 266 ~sp~~----~~l~~~~~d~~i~iwd~~~~----------------------------------------------~~~~~ 295 (430)
|+|++ ++|++++.||.|++||++++ +.+..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 99998 89999999999999999875 56777
Q ss_pred eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 296 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
+.+| ...|++++|+|++++|++++.||.|+|||+.+++.+..+
T Consensus 302 ~~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 302 HDDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ECTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred Eecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 8887 889999999999999999999999999999988766653
No 96
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=267.31 Aligned_cols=232 Identities=12% Similarity=0.038 Sum_probs=182.6
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEee-ecCCCceEEEEEcCC------CCEEEEEeCCCeEEEEECCCCee
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDIS------EKFSLFGGKGVEVNVWDLDKCEK 196 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~~~d~~~~~~ 196 (430)
..+++++.|++++||++..... ....... ..+.+.|.+++|+|+ +.+|++++.||+|++||+.++..
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTL------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp --------CEEEEEEEEETTTC------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred hhhccCCCCceEEEEEccCCCC------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence 3678889999999999864321 0111111 134678999999996 57999999999999999986542
Q ss_pred e-----------EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEE-
Q 014154 197 I-----------WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV- 264 (430)
Q Consensus 197 ~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~- 264 (430)
. ..+.. |...|++++| +++ ..|++|+.||+|++||++++..+...+.+|...|.+|
T Consensus 248 ~~~~~~~~~~p~~~l~~---------h~~~v~sv~~--s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSL---------ADSLITTFDF--LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp SSSEEECCCSCSEEECC---------TTTCEEEEEE--SSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred ccccceeecCceEEEEc---------CCCCEEEEEe--cCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 1 12222 3377999999 554 4899999999999999997666677889999999999
Q ss_pred -EecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCC-CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 265 -AEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 265 -~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
+|+|++ ++|++++.|++|+|||+++++++..+.+|.. ..|.+++|+|++..|++++.|++|++||++++.++.. +
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--l 393 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--L 393 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--E
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee--e
Confidence 678887 8999999999999999999888777777622 3588999999999999999999999999999988777 5
Q ss_pred eccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 342 KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 342 ~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
.+| ...|++++|+|+|++ ++++.|++|++|+...
T Consensus 394 ~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 394 VSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred ecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 577 556799999999998 9999999999999643
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-31 Score=253.09 Aligned_cols=282 Identities=13% Similarity=0.208 Sum_probs=232.6
Q ss_pred eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154 41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120 (430)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 120 (430)
....+.+|...+. .++.+ +|++|++|+.||.|++||+.+++.+..+.+ +...+.++.+. .
T Consensus 110 ~~~~l~~h~~~v~-~~~~~----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~~~~~---~---- 169 (445)
T 2ovr_B 110 SPKVLKGHDDHVI-TCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVG--------HTGGVWSSQMR---D---- 169 (445)
T ss_dssp CCEEEECSTTSCE-EEEEE----ETTEEEEEETTSCEEEEETTTCCEEEECCC--------CSSCEEEEEEE---T----
T ss_pred eeEEecccCCCcE-EEEEE----cCCEEEEEECCCcEEEEECCCCcEEEEEcC--------CCCCEEEEEec---C----
Confidence 4456778887652 34444 467999999999999999999988877665 34577777664 2
Q ss_pred ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
..+++++.+|.+.+|++.... .+..+. .|...|.+++++ ++.+++|+.||.|++||+.+++.+..+
T Consensus 170 ---~~l~s~~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 170 ---NIIISGSTDRTLKVWNAETGE--------CIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp ---TEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred ---CEEEEEeCCCeEEEEECCcCc--------EEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 589999999999999975332 344443 577889999995 678999999999999999999988888
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 280 (430)
..+. ..|.++.| ++.+|++|+.|+.|++||++++. ++..+.+|...|.++.| ++.++++++.|+
T Consensus 236 ~~~~---------~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 236 MGHV---------AAVRCVQY----DGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp ECCS---------SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred cCCc---------ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 7654 67899988 67899999999999999999855 58888999999999999 788999999999
Q ss_pred cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
.|++||+++++++..+.+| ...+.++.+ ++.+|++++.||.|++||+.+++.+..+.........|.+++|+ +.+
T Consensus 300 ~i~i~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGH-QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp CEEEEETTTCCEEEEECCC-CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred eEEEEECCCCCEEEEEcCC-cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence 9999999999999999998 888988887 56799999999999999999999988743211125567999996 455
Q ss_pred -cccCCCCceEecCCCCC
Q 014154 361 -NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 361 -~~~~~d~~i~~~~~~~~ 377 (430)
++++.||.|++|+....
T Consensus 375 l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEEETTSEEEEEETTTC
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 99999999999998764
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.7e-33 Score=248.02 Aligned_cols=235 Identities=11% Similarity=0.084 Sum_probs=184.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.|++|+|||+..+ ....+..+.+|...|..++++. ..++++|++|+.|++|+|||+.++....
T Consensus 26 ~~lasgs~D~~v~lwd~~~~---~~~~~~~l~gH~~~V~~v~~~~--~~~~~~l~s~s~D~~v~iWd~~~~~~~~----- 95 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNG---GQILIADLRGHEGPVWQVAWAH--PMYGNILASCSYDRKVIIWREENGTWEK----- 95 (316)
T ss_dssp CEEEEEETTTEEEEEEEETT---EEEEEEEEECCSSCEEEEEECC--GGGSSCEEEEETTSCEEEECCSSSCCCE-----
T ss_pred CEEEEEeCCCeEEEEEecCC---CcEEEEEEcCCCccEEEEEeCC--CCCCCEEEEEECCCEEEEEECCCCcceE-----
Confidence 57899999999999999874 1124667889999977766654 2247899999999999999986543100
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
+ ..+ ..|...|.+++|+|+
T Consensus 96 -----------~------------------------------------------------~~~-~~h~~~V~~v~~~p~~ 115 (316)
T 3bg1_A 96 -----------S------------------------------------------------HEH-AGHDSSVNSVCWAPHD 115 (316)
T ss_dssp -----------E------------------------------------------------EEE-CCCSSCCCEEEECCTT
T ss_pred -----------E------------------------------------------------EEc-cCCCCceEEEEECCCC
Confidence 0 000 135678889999997
Q ss_pred -CCEEEEEeCCCeEEEEECCCCeee---EeeCCCCCCCCCCcCCcceeEEEEeecCC-----------------CCEEEE
Q 014154 174 -EKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-----------------HRKFVA 232 (430)
Q Consensus 174 -~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~l~s 232 (430)
+.+|++|+.|++|++||+..+... ..+..| ...|.+++| +|+ +.+|++
T Consensus 116 ~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h---------~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAH---------TIGCNAVSW--APAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS---------SSCBCCCEE--CCCCCC------CCSCCCCCCCBEEC
T ss_pred CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc---------cCCcceEEE--ccccCCccccccccccCccccceEEE
Confidence 789999999999999999865321 222222 366888888 555 468999
Q ss_pred EeCCCcEEEEECCCCC--cceEEEeecCCCeEEEEecCCC----CEEEEEeCCCcEEEEEccCC---e-EEeeeeCCCCC
Q 014154 233 GTNDHQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG---K-LLGCFIGKCSG 302 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~ 302 (430)
|+.|+.|++||++... .++..+.+|...|.+++|+|++ .+|++++.|++|++||+++. + ....+..| ..
T Consensus 185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~ 263 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-ND 263 (316)
T ss_dssp CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SS
T ss_pred ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CC
Confidence 9999999999997542 3466788999999999999986 88999999999999999762 1 22345556 78
Q ss_pred CeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 303 SIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.|.+++|+|++.+|++++.|+.|+||+..
T Consensus 264 ~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 264 VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999999999999999999999976
No 99
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-33 Score=255.52 Aligned_cols=274 Identities=11% Similarity=0.089 Sum_probs=200.5
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc---cccee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI 91 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~ 91 (430)
..+++|+.||.|+||++..+ .++.+..+.+|...+.. +.| +|++++|++|+.||.|++||+.+++ ....+
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~h~~~v~~--~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~ 96 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGN---GWKHARTFSDHDKIVTC--VDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL 96 (377)
T ss_dssp SEEECCCSSSCBCEEEEETT---EEEECCCBCCCSSCEEE--EEE--CTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred CEEEEecCCCEEEEEEccCC---ceEEEEEEecCCceEEE--EEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence 46888989999999999974 12356678889888554 445 6788899999999999999998876 23332
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
. .+...+.++.+.+.. ..+++++.++.+.+|++..... ...++.+...|...|.+++|+
T Consensus 97 ~--------~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 97 L--------RLNRAATFVRWSPNE--------DKFAVGSGARVISVCYFEQEND-----WWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp C--------CCSSCEEEEECCTTS--------SCCEEEESSSCEEECCC----------CCCCEEECSSCCSCEEEEEEC
T ss_pred c--------ccCCceEEEEECCCC--------CEEEEEecCCeEEEEEECCccc-----ceeeeEeecccCCCeEEEEEc
Confidence 2 345678877776643 4899999999999999864421 012444443478999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC------------------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDK------------------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 233 (430)
|++++|++++.|+.|++||+.. ++.+..+ . |...|.+++| +|++.+|+++
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~v~~~~~--sp~~~~l~~~ 223 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P---------SGGWVHAVGF--SPSGNALAYA 223 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C---------CSSSEEEEEE--CTTSSCEEEE
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c---------CCceEEEEEE--CCCCCEEEEE
Confidence 9999999999999999999863 2233333 2 3477999999 8999999999
Q ss_pred eCCCcEEEEECCCCCcc---eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--E----------------
Q 014154 234 TNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--L---------------- 292 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~---------------- 292 (430)
+.|+.|++||+.++..+ +..+..|...|.+++|+|++++|++|+.++.+ +|+..... .
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT 302 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence 99999999999986642 56788899999999999999999998766655 67654211 0
Q ss_pred ------------E------eee----------------eCCCCCCeEEEEecCCC-C---eEEEEeCCCcEEEEEC
Q 014154 293 ------------L------GCF----------------IGKCSGSIRSIARHPTL-P---IIASCGLDSYLRFWDI 330 (430)
Q Consensus 293 ------------~------~~~----------------~~~~~~~v~~i~~~~~~-~---~l~s~~~dg~i~iwd~ 330 (430)
+ ..+ ..| ...|+++.+.+.. . .|+|||.||.|+|||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSBCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 011 115 8899999976644 3 5999999999999985
No 100
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=250.77 Aligned_cols=273 Identities=7% Similarity=0.017 Sum_probs=204.5
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
.+++.+|++|+.||.|++||+.+++.+..+.. ..+..+.+ . ..+++++.|+.+.+|+..
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~----------~~v~~~~~---~--------~~~~s~s~D~~i~~w~~~ 103 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITT----------PNPRTGGE---H--------PAIISRGPCNRLLLLYPG 103 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEEE----------ECCCTTCC---C--------CSEEEECSTTEEEEEETT
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEec----------CCceeeee---C--------CceEEecCCCeEEEEEcc
Confidence 45678999999999999999999987766642 01111111 1 127889999999999754
Q ss_pred ecCccccC-CCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeE
Q 014154 142 VTKVSAES-SCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 142 ~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
........ ....++.+...+...|.+++|+| ++++|++++.|++|++||+++++.......+. ...+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~~i~~ 175 (343)
T 3lrv_A 104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------DVEYSS 175 (343)
T ss_dssp TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------SCCCCE
T ss_pred CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------CCceEE
Confidence 21100000 11235555556668899999999 99999999999999999999988866554332 246899
Q ss_pred EEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
++| +|++.+|++|+.||.|++||++++......+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+.
T Consensus 176 ~~~--~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 176 GVL--HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp EEE--CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred EEE--CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence 999 899999999999999999999997754377888 999999999999999999999 5599999999987765554
Q ss_pred C---CCCCCeE--EEEecCCCCeEEEEeC-CCcEEEEECCCCceeeEEEeeccccceEEeeeccc---cccc-cccCCCC
Q 014154 298 G---KCSGSIR--SIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD---KEVA-NAAADAP 367 (430)
Q Consensus 298 ~---~~~~~v~--~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~-~~~~~d~ 367 (430)
. | ...+. +++|+|++++|++++. |+.|+||++.+...... . ..+..++|++ +... ++++.|+
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 253 TYTIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT--K-----DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE--E-----EEEEECCC----CCCCEEEEEEETT
T ss_pred ccccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE--e-----cCceeEecCccccccceeEEEecCC
Confidence 3 2 33343 6999999999999998 99999999976654433 1 2357788888 6666 7788888
Q ss_pred ceEecCC
Q 014154 368 MLEIQNG 374 (430)
Q Consensus 368 ~i~~~~~ 374 (430)
.+.++-.
T Consensus 325 ~~~~~~~ 331 (343)
T 3lrv_A 325 GIAAILK 331 (343)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 8887743
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=233.95 Aligned_cols=273 Identities=18% Similarity=0.216 Sum_probs=217.4
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
++++ +||+| .|++|+|||+.+++.+..+..+ .+...+.++.+.+.. ..+++++.|+.+++|++.
T Consensus 34 S~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~--------~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 34 SSGN-VLAVA-LDNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEG--------NYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CTTS-EEEEE-ETTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTS--------SEEEEEETTSEEEEEETT
T ss_pred CCCC-EEEEE-eCCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCC--------CEEEEEECCCcEEEeecC
Confidence 5554 67766 5899999999999988877643 344578888876654 489999999999999976
Q ss_pred ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEE
Q 014154 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAA 220 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 220 (430)
... .++.+. .|...+.++.+ ++..+++++.++.+++|+..... .+..+..+. ..+..+.
T Consensus 98 ~~~--------~~~~~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 157 (318)
T 4ggc_A 98 QQK--------RLRNMT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---------QEVCGLR 157 (318)
T ss_dssp TTE--------EEEEEE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEE
T ss_pred Cce--------eEEEec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCcc---------CceEEEE
Confidence 432 444444 55666665544 57899999999999999987653 344455543 6688899
Q ss_pred EeecCCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCCEE---EEEeCCCcEEEEEccCCeEEe
Q 014154 221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNI---YIGNGSGDLASVDIRTGKLLG 294 (430)
Q Consensus 221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l---~~~~~d~~i~iwd~~~~~~~~ 294 (430)
+ .+++.+|++++.|+.|++||+++++. .......+...|.+++++|++..+ ++++.++.|++||.+......
T Consensus 158 ~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 158 W--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp E--CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred E--cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 9 88999999999999999999987542 245566678899999999987543 356678999999999988876
Q ss_pred eeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEe
Q 014154 295 CFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI 371 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~ 371 (430)
.... ...+..+.|+|++..+++++ .|+.|+|||+.+++++.. +.+| ...|++++|+|+|++ ++++.|++|++
T Consensus 236 ~~~~--~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 236 AVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGH-TSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCC-SSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cccc--eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--EcCC-CCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 6654 56899999999999887765 799999999999999988 6788 556799999999998 99999999999
Q ss_pred cCCCCC
Q 014154 372 QNGNDT 377 (430)
Q Consensus 372 ~~~~~~ 377 (430)
|+..+.
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 998653
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.2e-32 Score=247.83 Aligned_cols=286 Identities=11% Similarity=0.019 Sum_probs=199.8
Q ss_pred eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154 40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES 119 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 119 (430)
+.+..+..|...|.+++| +|||++|++|+.+| ++||++.+++....... ..+..+.+.....
T Consensus 10 ~~~~~~~~h~~~V~~v~f----s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~~--- 71 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEF----NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------RHLSKVRMLHRTN--- 71 (355)
T ss_dssp ---------CCCCCEEEE----CTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------SCCCEEEECTTSS---
T ss_pred CCccccccCCCceEEEEE----CCCCCEEEEEcCCE-EEEEecCCcceeeeeec----------CCeEEEEEcCCCC---
Confidence 455566778888666555 67888999998765 78999887665443321 1233334433322
Q ss_pred cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeE
Q 014154 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIW 198 (430)
Q Consensus 120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~ 198 (430)
..+++++.++.+++|++.... .+..+ .+...|.+++++++. ++++ .++.|++||+.++ +.+.
T Consensus 72 ----~~~~~~~~d~~v~iWd~~~~~--------~~~~~--~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 72 ----YVAFVTGVKEVVHIWDDVKKQ--------DVSRI--KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp ----EEEEECSSTTEEEEEETTTTE--------EEEEE--ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS
T ss_pred ----EEEEEECCccEEEEEECCCCc--------EEEEE--ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE
Confidence 244667778899999975332 33433 356789999998754 4443 4779999999876 4443
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE--EeCCCcEEEEECCCCC--------------cc-eEEEeecCCCe
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQR--------------RP-VMSFDFRETPI 261 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~--------------~~-~~~~~~~~~~i 261 (430)
.+.. ....+++ ++ .++++ |+.+|.|++||+.++. .+ +..+.+|...|
T Consensus 135 ~~~~------------~~~~~~~--s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 135 DDIR------------FGGVCEF--SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp CCEE------------EEEEEEE--ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE
T ss_pred Eecc------------CCceEEE--Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence 3221 2334455 44 55665 5899999999999754 12 67889999999
Q ss_pred EEEEecCCCCEEEEEeCCCc-EEEEEccCCeEEeeee-CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 262 KAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
++++|+|++++|++|+.|++ |++||+++++++..+. ++|...|++++|+|++.+|++++.|++|+|||+..+......
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~ 278 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH 278 (355)
T ss_dssp EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc
Confidence 99999999999999999998 9999999999999998 523899999999999999999999999999999765322111
Q ss_pred E--------------------eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 340 F--------------------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 340 ~--------------------~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
. +..........++|+++|.. ++++.||.+++|+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 0 11111111256899999988 8899999999998765
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=251.11 Aligned_cols=292 Identities=13% Similarity=0.092 Sum_probs=210.1
Q ss_pred cceeeecCCCceEEEEccCCCC------CcceeeeecCCCC------------CCcceeeeeecCCCCC--ceeEEeecC
Q 014154 15 LRALTFDSLGLIKVIEARGEHG------GVPKVVERWGDPH------------SSNCVLAASIDDSQND--PLLAVARKN 74 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~~p~g--~~l~~g~~d 74 (430)
..|++|+.||.|+||++..+.. ...++...+.+|. ..|..+++ +|++ .+|++++.|
T Consensus 41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~----~~~~~~~~l~s~s~d 116 (447)
T 3dw8_B 41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW----LPQKNAAQFLLSTND 116 (447)
T ss_dssp SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE----CCCCSSSEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE----cCCCCcceEEEeCCC
Confidence 5789999999999999987521 1223567788887 66555554 5555 689999999
Q ss_pred CeEEEecCCCCcccceeec-------------cCCCC-------------------CCCCCCceEEEEEeecCccccccc
Q 014154 75 GLTDILNPLNGDLRVAISN-------------AGDSG-------------------AQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~-------------~~~~~-------------------~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
|.|++||+.++........ ..... ...+...+.++.+.+..
T Consensus 117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------- 189 (447)
T 3dw8_B 117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY------- 189 (447)
T ss_dssp SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-------
T ss_pred CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-------
Confidence 9999999976543211000 00000 12456677777776643
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEe------eecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW------NVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE 195 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~ 195 (430)
..++++ .++.+.+|++..... .+.++ ...|...|.+++|+|++ ++|++|+.||.|++||+++++
T Consensus 190 -~~l~s~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~ 260 (447)
T 3dw8_B 190 -ETYLSA-DDLRINLWHLEITDR-------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA 260 (447)
T ss_dssp -SEEEEE-CSSEEEEEETTEEEE-------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred -CEEEEe-CCCeEEEEECCCCCc-------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence 377777 799999999863221 23332 12467889999999998 999999999999999999877
Q ss_pred e----eEeeCCCCCCCC---CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC--------
Q 014154 196 K----IWTAKPPPKNSL---GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-------- 260 (430)
Q Consensus 196 ~----~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------- 260 (430)
. ...+..+..... ...+...|.+++| +|++.+|++++. +.|++||++....++..+..|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKF--SHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEE--CTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEE--CCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 6 566665531000 0001127999999 899999999999 999999999744567788887532
Q ss_pred -------eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC--------------------------------CC
Q 014154 261 -------IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------------------------CS 301 (430)
Q Consensus 261 -------i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~ 301 (430)
+..++|+|++++|++|+.||.|++||+.+++.+. +..+ ..
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccC
Confidence 3349999999999999999999999999988753 2221 13
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
..|..++|+|++.+|++++.++ +++|..+
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 5688999999999999998776 8888753
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-30 Score=236.55 Aligned_cols=276 Identities=12% Similarity=0.062 Sum_probs=212.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecC-CCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP-LNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~-~~~~~~~~~~ 92 (430)
..+++++.||.|+||++..+. .......+..|...+..+ .+ +|+++ +|++|+.||.|++||+ .+++. ..+.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~~~v~~~--~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~ 96 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQA--KNVDLLQSLRYKHPLLCC--NF--IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT 96 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTT--TEEEEEEEEECSSCEEEE--EE--EESSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred CEEEEEcCCCeEEEEEeCCCC--ccccceeeeecCCceEEE--EE--CCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence 468899999999999999851 011233444677775544 44 56788 9999999999999999 77754 3332
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccC-CCcceEEeeecCCCceEEEEEc
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
. ..+...+.++.+.+ . ..+++++.++.+.+|++......... ....+.. +.+...|.+++|+
T Consensus 97 ~------~~~~~~v~~l~~~~-~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 97 N------NEANLGICRICKYG-D--------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTN 159 (342)
T ss_dssp S------CCCCSCEEEEEEET-T--------TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEEC
T ss_pred c------cCCCCceEEEEeCC-C--------CEEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeCCceEEEEec
Confidence 2 01556888888876 3 59999999999999998641000000 0001222 2367889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-Ceee--EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCC
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDK-CEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~-~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 247 (430)
|++ +++++.++.|++||+++ +... .....+ ...+.+++| +| ++.+|++++.||.|++|++...
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~i~~i~~--~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGL---------KYQIRDVAL--LPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSC---------SSCEEEEEE--CSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCC---------CCceeEEEE--CCCCCCEEEEEecCCcEEEEEEcCC
Confidence 877 99999999999999987 4432 222222 267999999 88 9999999999999999999876
Q ss_pred -----CcceEEEeecCC---------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 248 -----RRPVMSFDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 248 -----~~~~~~~~~~~~---------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
..+...+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+.+||...|.+++ |++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD 304 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence 256788888865 9999999999999999999999999999999999999987688999999 999
Q ss_pred CeEEEEeCCCc-EEEEE
Q 014154 314 PIIASCGLDSY-LRFWD 329 (430)
Q Consensus 314 ~~l~s~~~dg~-i~iwd 329 (430)
.+|++++.||. .+.|.
T Consensus 305 ~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 305 NILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEEECTHHHHCSS
T ss_pred CeEEEEecCCccccccc
Confidence 99999999998 55554
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-30 Score=243.43 Aligned_cols=290 Identities=14% Similarity=0.110 Sum_probs=217.2
Q ss_pred CcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc---ccceeeccCC-------------------------------
Q 014154 51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGD------------------------------- 96 (430)
Q Consensus 51 ~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~------------------------------- 96 (430)
++.+++ + +|+|++|+++ .++.|++||+.+|+ .+..+.....
T Consensus 6 p~~~v~--~--s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 6 PLQNLL--T--SRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCEEE--E--CSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred cEEEEE--e--cCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 444555 4 6778866655 67899999999998 5555543211
Q ss_pred ---------------CCCCCCCCceEEEEEeecCcccccccCceE-EEEccCCeeEEEEeeecCccccCCCcceEEeee-
Q 014154 97 ---------------SGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV- 159 (430)
Q Consensus 97 ---------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~- 159 (430)
....++.+.+.++.+.+... .+ ++++.+|.+.+|++... ....+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--------~l~~~~~~dg~v~iwd~~~~------~~~~~~~~~~~ 146 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--------RLIACADSDKSLLVFDVDKT------SKNVLKLRKRF 146 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSS--------EEEEEEGGGTEEEEEEECSS------SSSCEEEEEEE
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCC--------EEEEEECCCCeEEEEECcCC------CCceeeeeecc
Confidence 00012333577777665443 54 78889999999998621 0124444432
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----eeCCCCCCCCCCcCCcceeEEEEeecCC---CCEEEE
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVA 232 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~s 232 (430)
.+...|.+++|+|++++|++++.+|.|++|++.++.... .+.. |...|.+++| +|+ +.+|++
T Consensus 147 ~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~--sp~~~~~~~l~s 215 (450)
T 2vdu_B 147 CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG---------HVSMLTDVHL--IKDSDGHQFIIT 215 (450)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE---------CSSCEEEEEE--EECTTSCEEEEE
T ss_pred cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec---------ccCceEEEEE--cCCCCCCcEEEE
Confidence 456889999999999999999999999999998765432 2222 3377999999 778 889999
Q ss_pred EeCCCcEEEEECCCCCcceEE-EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------------
Q 014154 233 GTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------ 299 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------ 299 (430)
|+.|+.|++||+.++.. +.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++++..+..+
T Consensus 216 ~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (450)
T 2vdu_B 216 SDRDEHIKISHYPQCFI-VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHL 293 (450)
T ss_dssp EETTSCEEEEEESCTTC-EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSB
T ss_pred EcCCCcEEEEECCCCce-eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccc
Confidence 99999999999998664 444 66899999999999 9999999999999999999999988887632
Q ss_pred ------------CCCCeEEEEecCCCCeEEEEe-CCCcEEEEEC--CCC---ceeeEEEeeccccceEEeeecccccccc
Q 014154 300 ------------CSGSIRSIARHPTLPIIASCG-LDSYLRFWDI--KTR---QLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 300 ------------~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 361 (430)
....|.+++|+|++++|++++ .|+.|+||++ .++ +.+.. +.++ ..+.+++|+|++.++
T Consensus 294 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~--~~~~--~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 294 APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQI--ITFP--YNVISLSAHNDEFQV 369 (450)
T ss_dssp C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEE--EECS--SCEEEEEEETTEEEE
T ss_pred ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccE--eccC--CceEEEEecCCcEEE
Confidence 135789999999999999998 8999999999 555 44444 4455 457999999977664
Q ss_pred ccCC-------CCceEecCCCC
Q 014154 362 AAAD-------APMLEIQNGND 376 (430)
Q Consensus 362 ~~~~-------d~~i~~~~~~~ 376 (430)
+.+. +..|.+|..+.
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEET
T ss_pred EEecccCCCCCCcceEEEEEEc
Confidence 4332 55688887654
No 106
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.3e-29 Score=233.07 Aligned_cols=274 Identities=14% Similarity=0.100 Sum_probs=217.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeec
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++++.|+.|++||+.++ +++..+..|.. +.++.+ +|+|++| ++++.|+.|++||+.+++.+..+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-----~~~~~~~~~~~---~~~~~~--s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-----KVTATIPVGSN---PMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-----EEEEEEECSSS---EEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCC-----eEEEEeecCCC---cceEEE--CCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence 35788999999999999987 77777776654 455666 7888877 6677999999999999988777654
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS 173 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~ 173 (430)
. ..+.++.+.+... ..++++..++.+.+|++.... .+... .+...+.+++|+|+
T Consensus 73 ~---------~~v~~~~~spdg~-------~l~~~~~~~~~v~v~d~~~~~--------~~~~~--~~~~~~~~~~~s~d 126 (391)
T 1l0q_A 73 G---------SSPQGVAVSPDGK-------QVYVTNMASSTLSVIDTTSNT--------VAGTV--KTGKSPLGLALSPD 126 (391)
T ss_dssp S---------SSEEEEEECTTSS-------EEEEEETTTTEEEEEETTTTE--------EEEEE--ECSSSEEEEEECTT
T ss_pred C---------CCccceEECCCCC-------EEEEEECCCCEEEEEECCCCe--------EEEEE--eCCCCcceEEECCC
Confidence 2 3666676655433 233566677999999975332 33333 34567899999999
Q ss_pred CCEE-EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE-EEEeCCCcEEEEECCCCCcce
Q 014154 174 EKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 174 ~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~ 251 (430)
+++| ++++.++.|++||+.+++.+..+..+ ..+.+++| +|++..| ++++.++.|++||++++. .+
T Consensus 127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~dg~~l~~~~~~~~~v~~~d~~~~~-~~ 193 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAV--TPDGTKVYVANFDSMSISVIDTVTNS-VI 193 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTE-EE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEecC----------CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCe-EE
Confidence 9987 67788999999999999888777654 34688899 8899877 677788999999999864 34
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEe---CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE-EEEeCCCcEEE
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLRF 327 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~i~i 327 (430)
..+. +...+.+++|+|++++|++++ .++.|++||+++++.+..+..+ ..+.+++|+|++++| ++++.|+.|++
T Consensus 194 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 194 DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSV 270 (391)
T ss_dssp EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEE
Confidence 4554 456889999999999999888 6899999999999999888875 358899999999877 67788999999
Q ss_pred EECCCCceeeEEE
Q 014154 328 WDIKTRQLLSAVF 340 (430)
Q Consensus 328 wd~~~~~~~~~~~ 340 (430)
||+.+++.+..+.
T Consensus 271 ~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 271 IDTATNTITATMA 283 (391)
T ss_dssp EETTTTEEEEEEE
T ss_pred EECCCCcEEEEEE
Confidence 9999999888753
No 107
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=4.4e-30 Score=224.73 Aligned_cols=299 Identities=9% Similarity=0.030 Sum_probs=199.0
Q ss_pred cceeeeecCCCCCCcceee---eeecCCCCCc--eeEEeecCCeEEEecCCCC---cccceeeccCCCCCCCCCCceEEE
Q 014154 38 VPKVVERWGDPHSSNCVLA---ASIDDSQNDP--LLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGL 109 (430)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~---~~~~~~p~g~--~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~ 109 (430)
..+++..++...+.. .+. +-|. .+..+ -++++ ....|++|+..++ +.++++.. +..++.++
T Consensus 24 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~-~~~~v~lw~~~~~~~~~~~~~~~~--------~~~~v~~~ 92 (356)
T 2w18_A 24 NLQLVSELKNPSGSC-SVDVSAMFWE-RAGCKEPCIITA-CEDVVSLWKALDAWQWEKLYTWHF--------AEVPVLQI 92 (356)
T ss_dssp CEEEEEEECCCCSSC-EEEEEEEEEC-----CEEEEEEE-ESSEEEEEEESSSSBEEEEEEEEC--------CSSCEEEE
T ss_pred eeeeeehhcCCCCCe-EEEEeeeeec-cCCCCccEEEEe-ccceEEEcccCCCccceeeEEEec--------cCceeEEE
Confidence 346677777665442 232 2231 22222 34444 4589999999988 66666654 33466666
Q ss_pred EEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe--CCCeEE
Q 014154 110 HLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVN 187 (430)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~ 187 (430)
.+.+... +-.+++-+.-....|+.+.++++ |+.+..+....+..+.-..+ ++++++.+++ .|+.|+
T Consensus 93 ~~~~~~~------~~~~~~~~~~~~~~v~sla~spd-----~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 93 VPVPDVY------NLVCVALGNLEIREIRALFCSSD-----DESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVE 160 (356)
T ss_dssp CCCTTCC------SCEEEEECSSSEEEEEEECC-----------CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEE
T ss_pred EEcCccc------ceeeeeeccccccceEEEEECCC-----ccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEE
Confidence 5554333 02344444445667777777663 22333333222222222223 4666666644 599999
Q ss_pred EEEC-CCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC---CCeE
Q 014154 188 VWDL-DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIK 262 (430)
Q Consensus 188 ~~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~i~ 262 (430)
+|++ .+++.+..+..+. ..+..++|.+ +-++.+|++++.|++|+|||+.+++ .+.++.+|. ..+.
T Consensus 161 ~~~~s~dG~~~~s~~~~~---------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~ 230 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMP---------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVC 230 (356)
T ss_dssp EEEECTTSCEEEEEEECC---------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCE
T ss_pred EEEECCCCceeeeeccCC---------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeE
Confidence 9999 4477766665554 5578888842 2277999999999999999999976 477887653 3677
Q ss_pred EEEecCCCCEE------------EEEeCCCcEEEEEccCCeEEeee-----eCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154 263 AVAEEPDSFNI------------YIGNGSGDLASVDIRTGKLLGCF-----IGKCSGSIRSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 263 ~~~~sp~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 325 (430)
+++|+|++.++ ++|+.|++|++||..+++.+..+ .+| ...+.+..+ ++.++++++.|++|
T Consensus 231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~--sg~~lASgS~DgTI 307 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV--KDHCAAAILTSGTI 307 (356)
T ss_dssp EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTC-CCCEEEEEE--ETTEEEEEETTSCE
T ss_pred EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC-cceeEcccc--CCCEEEEEcCCCcE
Confidence 88999999876 56788999999999999987765 255 455554444 48899999999999
Q ss_pred EEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154 326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
+|||+.+++++.+ +.+|....+..++|+|||++ ++++.|++|+||+.
T Consensus 308 kIWDl~tGk~l~t--L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTAL--LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEE--ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEE--ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999998 67786666567899999998 89999999999974
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-31 Score=265.16 Aligned_cols=252 Identities=11% Similarity=0.083 Sum_probs=201.8
Q ss_pred eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154 43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR 122 (430)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 122 (430)
..+.+|.+.|.++ .+ +|+|++|++|+.||.|+|||+.++..
T Consensus 3 ~~l~gH~~~V~~l--~~--s~dg~~latg~~dg~I~vwd~~~~~~----------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDA--VL--DYYGKRLATCSSDKTIKIFEVEGETH----------------------------------- 43 (753)
T ss_dssp -----CCCCEEEE--CC--CSSSCCEEEEETTTEEEEEEEETTEE-----------------------------------
T ss_pred eecccCcceeEEE--EE--CCCCCeEEEEECCCcEEEEecCCCCC-----------------------------------
Confidence 4577899885544 44 67888999999999999999752210
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeE
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE--KIW 198 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~--~~~ 198 (430)
. .+..+ ..|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+.
T Consensus 44 --~---------------------------~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 93 (753)
T 3jro_A 44 --K---------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 93 (753)
T ss_dssp --E---------------------------EEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred --c---------------------------cceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc
Confidence 0 00011 145678999999987 9999999999999999999886 556
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecC-------
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEP------- 268 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp------- 268 (430)
.+..+. ..|.+++| +|+ +.++++|+.||.|++||++.+. .....+..|...|.+++|+|
T Consensus 94 ~~~~h~---------~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 94 VHAVHS---------ASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred cccCCC---------CCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 665554 77999999 777 9999999999999999998753 23566788999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEEccCC----eEEeeeeCCCCCCeEEEEecCC---CCeEEEEeCCCcEEEEECCCCce
Q 014154 269 ------DSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIRSIARHPT---LPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 269 ------~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
++.+|++|+.||.|++||++++ .+...+.+| ...|++++|+|+ +.+|++++.||.|++||+.+++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999887 566778887 899999999999 89999999999999999998642
Q ss_pred eeE---EEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 336 LSA---VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ~~~---~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
... ....+| ...+++++|+|+|.+ ++++.||.|++|+...
T Consensus 242 ~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 211 112334 556799999999998 8899999999999875
No 109
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.4e-30 Score=226.42 Aligned_cols=279 Identities=10% Similarity=-0.014 Sum_probs=174.1
Q ss_pred CCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCe---EEEecCCC
Q 014154 9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGL---TDILNPLN 84 (430)
Q Consensus 9 ~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~---i~iwd~~~ 84 (430)
.++|..+.++++++ ..|++|+...+ -..+.+.+|..|+.+|..+.+ .||-. ++.++-.+=. |+..-+..
T Consensus 49 ~~~~~~~~~~~~~~-~~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 49 RAGCKEPCIITACE-DVVSLWKALDA--WQWEKLYTWHFAEVPVLQIVP----VPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp ----CEEEEEEEES-SEEEEEEESSS--SBEEEEEEEECCSSCEEEECC----CTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred cCCCCccEEEEecc-ceEEEcccCCC--ccceeeEEEeccCceeEEEEE----cCcccceeeeeeccccccceEEEEECC
Confidence 45666677888876 57999999984 444677888888877443333 33222 2222211100 11000000
Q ss_pred C-cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc---cCCeeEEEEeeecCccccCCCcceEEeeec
Q 014154 85 G-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 85 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
. +........ .+ ....+|.... +.++..+ .++.+++|++.. ++....=...
T Consensus 122 d~~~~~~~l~s--------~g--~~~~v~~l~~-------g~lv~ss~~g~d~~V~~~~~s~--------dG~~~~s~~~ 176 (356)
T 2w18_A 122 DDESEKQVLLK--------SG--NIKAVLGLTK-------RRLVSSSGTLSDQQVEVMTFAE--------DGGGKENQFL 176 (356)
T ss_dssp ----CCEEEEE--------EE--EEEEEEEETT-------TEEEEEESSSTTCEEEEEEECT--------TSCEEEEEEE
T ss_pred CccccccEEEe--------CC--CeEEEEecCC-------CcEEEecccCCCCcEEEEEECC--------CCceeeeecc
Confidence 0 000000000 00 0012222222 3444443 366677776532 1222221224
Q ss_pred CCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE-------
Q 014154 161 ASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF------- 230 (430)
Q Consensus 161 ~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l------- 230 (430)
|...+..++|++ ++.+|++++.|++|+|||+.+++.+.++..+... ...+.+++| +|++.++
T Consensus 177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------v~~v~~vaf--SpdG~~lvs~s~~~ 248 (356)
T 2w18_A 177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------QASVCHKAY--SEMGLLFIVLSHPC 248 (356)
T ss_dssp CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CCCEEEEE--EETTEEEEEEC---
T ss_pred CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------eeeeEEEEE--CCCCCEEEEeccCC
Confidence 566777888888 7899999999999999999999999988754311 135777889 7788876
Q ss_pred -----EEEeCCCcEEEEECCCCCcceEEE-----eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154 231 -----VAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 231 -----~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 300 (430)
++|+.|++|++||..+++. +..+ .+|...+.+..++ +.++++|+.|++|+|||+.+++++.++.+|+
T Consensus 249 ~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~ 325 (356)
T 2w18_A 249 AKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVS 325 (356)
T ss_dssp ---------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC-
T ss_pred CcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCC
Confidence 6688999999999998653 4443 3565555444444 7799999999999999999999999999883
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
...+..++|+|+|++|++|+.|++|+|||+
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 334556899999999999999999999995
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.1e-30 Score=241.07 Aligned_cols=258 Identities=14% Similarity=0.140 Sum_probs=203.5
Q ss_pred ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC----------CcccceeeccCCCCCCCCCCceEEEEEee
Q 014154 44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----------GDLRVAISNAGDSGAQPEDDGIVGLHLFK 113 (430)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 113 (430)
....|.+.+..++++.+ ++.+||+++.+|.|++|++.+ ...+..+.. +...+.++.|.+
T Consensus 123 ~~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~ 191 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG--------HQKEGYGLSWNP 191 (430)
T ss_dssp EEEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC--------CSSCCCCEEECT
T ss_pred EEEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC--------CCCCeEEEEeCC
Confidence 34458888776666541 257899999999999999976 344444443 344667777766
Q ss_pred cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 014154 114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLD 192 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~ 192 (430)
... +.+++++.+|.+.+|++....... ..-.....+. .|...|.+++|+| ++.+|++++.|+.|++||++
T Consensus 192 ~~~-------~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 192 NLN-------GYLLSASDDHTICLWDINATPKEH-RVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp TST-------TEEEEECTTSCEEEEETTSCCBGG-GEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCC-------CeEEEEeCCCeEEEEeCCCCCCCC-ceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 543 589999999999999986532100 0000123333 5778999999999 78899999999999999998
Q ss_pred CC---eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC
Q 014154 193 KC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP 268 (430)
Q Consensus 193 ~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp 268 (430)
++ ..+..+..+. ..|++++| +|++. +|++|+.||.|++||++....++..+..|...|.+++|+|
T Consensus 263 ~~~~~~~~~~~~~~~---------~~v~~i~~--~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHT---------AEVNCLSF--NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp CSCSSSCSEEEECCS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred CCCCCcceeEeecCC---------CCeEEEEe--CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence 76 3455554443 67999999 78776 7999999999999999986667889999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEEccC--------------CeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCC
Q 014154 269 DSF-NIYIGNGSGDLASVDIRT--------------GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 269 ~~~-~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~ 332 (430)
++. +|++++.|+.|++||+.. .+++..+.+| ...|++++|+|+++ +|++++.||.|+||++..
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 985 689999999999999987 3667777787 88999999999998 899999999999999875
Q ss_pred C
Q 014154 333 R 333 (430)
Q Consensus 333 ~ 333 (430)
.
T Consensus 411 ~ 411 (430)
T 2xyi_A 411 N 411 (430)
T ss_dssp H
T ss_pred c
Confidence 3
No 111
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.1e-30 Score=238.69 Aligned_cols=241 Identities=15% Similarity=0.119 Sum_probs=190.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||.|+||++..+ ..+.+..+.+|...+..++++. ..++++|++|+.||.|++||+.+++...
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~----- 93 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVLIWKEENGRWSQ----- 93 (379)
T ss_dssp SEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECC--GGGCSEEEEEETTSCEEEEEEETTEEEE-----
T ss_pred CEEEEEECCCcEEEEecCCC---cceeeeEecCCCCcEEEEEeCC--CCCCCEEEEeccCCEEEEEEcCCCceeE-----
Confidence 46889999999999999842 1156778889999876666654 3347899999999999999986543100
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
+..+ ..|...|.+++|+|+
T Consensus 94 -----------------------------------------------------------~~~~-~~~~~~v~~~~~~~~~ 113 (379)
T 3jrp_A 94 -----------------------------------------------------------IAVH-AVHSASVNSVQWAPHE 113 (379)
T ss_dssp -----------------------------------------------------------EEEE-CCCSSCEEEEEECCGG
T ss_pred -----------------------------------------------------------eeee-cCCCcceEEEEeCCCC
Confidence 0000 134577899999998
Q ss_pred -CCEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecC-------------CCCEEEEEeCCC
Q 014154 174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDH 237 (430)
Q Consensus 174 -~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~s~~~dg 237 (430)
+.+|++++.|+.|++||+.+... ...+..+. ..|.+++| +| ++.+|++++.|+
T Consensus 114 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg 182 (379)
T 3jrp_A 114 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA---------IGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN 182 (379)
T ss_dssp GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT---------TCEEEEEE--CCCC----------CTTCEEEEEETTS
T ss_pred CCCEEEEecCCCcEEEEecCCCCceeeEEecCCC---------CceEEEEE--cCccccccccccCCCCCCEEEEEeCCC
Confidence 99999999999999999987633 22333332 67999999 66 689999999999
Q ss_pred cEEEEECCCCCc---ceEEEeecCCCeEEEEecCC---CCEEEEEeCCCcEEEEEccCCe-----EEeeeeCCCCCCeEE
Q 014154 238 QVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRS 306 (430)
Q Consensus 238 ~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~ 306 (430)
.|++||++.+.. +...+.+|...|.+++|+|+ +.+|++++.||.|++||++++. .+.....| ...|++
T Consensus 183 ~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~ 261 (379)
T 3jrp_A 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR 261 (379)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEE
T ss_pred eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEE
Confidence 999999987543 34567789999999999999 8999999999999999999863 22222335 789999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 337 (430)
++|+|++.+|++++.||.|++|++.......
T Consensus 262 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 262 ASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292 (379)
T ss_dssp EEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred EEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence 9999999999999999999999998654433
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=5.2e-30 Score=232.96 Aligned_cols=248 Identities=19% Similarity=0.226 Sum_probs=201.5
Q ss_pred CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEE
Q 014154 101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSL 178 (430)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~ 178 (430)
+|.+.|.++.+.+.. ..+++++.+|.+++|++..... ....+..+. .|...|.+++|+| ++++|+
T Consensus 9 gH~~~v~~~~~~~~~--------~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYG--------RHVATCSSDQHIKVFKLDKDTS----NWELSDSWR-AHDSSIVAIDWASPEYGRIIA 75 (351)
T ss_dssp CCSSCEEEEEECSSS--------SEEEEEETTSEEEEEEECSSSC----CEEEEEEEE-CCSSCEEEEEECCGGGCSEEE
T ss_pred ccccceeEEEEcCCC--------CEEEEeeCCCeEEEEECCCCCC----cceecceec-cCCCcEEEEEEcCCCCCCEEE
Confidence 456788888886644 4899999999999999864321 001233333 5788999999999 599999
Q ss_pred EEeCCCeEEEEECCCC---------eeeEeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCC
Q 014154 179 FGGKGVEVNVWDLDKC---------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 179 ~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 247 (430)
+++.||.|++||+.++ +.+..+..+. ..|.+++| +|+ +.+|++++.|+.|++||++++
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK---------GSLYSVKF--APAHLGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTCEEEEEECSST
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccC---------CceeEEEE--cCCCCCcEEEEecCCCcEEEecCCCh
Confidence 9999999999999876 4456666554 77999999 788 999999999999999999876
Q ss_pred CcceEEEe-------------ecCCCeEEEEecCC---CCEEEEEeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEe
Q 014154 248 RRPVMSFD-------------FRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 248 ~~~~~~~~-------------~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~ 309 (430)
.. +..+. .|...+.+++|+|+ +.+|++++.++.+.+|+...++. +..+.+| ...|++++|
T Consensus 145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~ 222 (351)
T 3f3f_A 145 SD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-KSLIRSISW 222 (351)
T ss_dssp TC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC-CSCEEEEEE
T ss_pred HH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC-CcceeEEEE
Confidence 53 22211 46778999999997 89999999999998888887765 6677787 899999999
Q ss_pred cCCC----CeEEEEeCCCcEEEEECCCC----------------------------------------------ceeeEE
Q 014154 310 HPTL----PIIASCGLDSYLRFWDIKTR----------------------------------------------QLLSAV 339 (430)
Q Consensus 310 ~~~~----~~l~s~~~dg~i~iwd~~~~----------------------------------------------~~~~~~ 339 (430)
+|++ .+|++++.||.|++||++++ +.+..
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 301 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE- 301 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE-
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE-
Confidence 9998 79999999999999999875 33333
Q ss_pred EeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 340 FLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 340 ~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+.+| ...|++++|+|++.+ ++++.|+.|++|+....
T Consensus 302 -~~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 302 -HDDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp -ECTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred -Eecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 5567 456799999999998 99999999999998764
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=5.8e-29 Score=233.60 Aligned_cols=312 Identities=8% Similarity=-0.014 Sum_probs=232.5
Q ss_pred eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCC
Q 014154 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG 98 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 98 (430)
++.+++.++||.+... .+..+.+..+..+.. ..++.+ +|++.++++++.++.|++||+.+++....+... .
T Consensus 94 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~---~~~~~~--s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~ 164 (433)
T 3bws_A 94 RKPEELNEKLIALDKE-GITHRFISRFKTGFQ---PKSVRF--IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE---K 164 (433)
T ss_dssp SSGGGGTTCEEECCBT-TCSEEEEEEEECSSC---BCCCEE--SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH---H
T ss_pred cccCCCceEEEEECCC-CCcceEEEEEcCCCC---ceEEEE--eCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc---c
Confidence 5667776777766542 112234444544433 234555 667778888889999999999988876533210 0
Q ss_pred CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEE
Q 014154 99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178 (430)
Q Consensus 99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~ 178 (430)
+..+...+.++.+ .... ..+++++.++.+.+|++.... .+..+. .+...+.+++|+|++++++
T Consensus 165 ~~~~~~~v~~~~~-~~~~-------~~~~s~~~d~~v~~~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~ 227 (433)
T 3bws_A 165 YKKKLGFVETISI-PEHN-------ELWVSQMQANAVHVFDLKTLA--------YKATVD-LTGKWSKILLYDPIRDLVY 227 (433)
T ss_dssp HHTTCCEEEEEEE-GGGT-------EEEEEEGGGTEEEEEETTTCC--------EEEEEE-CSSSSEEEEEEETTTTEEE
T ss_pred ccccCCceeEEEE-cCCC-------EEEEEECCCCEEEEEECCCce--------EEEEEc-CCCCCeeEEEEcCCCCEEE
Confidence 1133456776666 3322 478889999999999975322 344443 5677899999999999886
Q ss_pred EEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe--------CCCcEEEEECCCCCc
Q 014154 179 FGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------NDHQVRLYDTSAQRR 249 (430)
Q Consensus 179 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~ 249 (430)
+++ .++.|++||+.+++.+..+..+ ..+.+++| +|++.+|++++ .|+.|++||+.+++.
T Consensus 228 ~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~ 295 (433)
T 3bws_A 228 CSNWISEDISVIDRKTKLEIRKTDKI----------GLPRGLLL--SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL 295 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEECCCC----------SEEEEEEE--CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred EEecCCCcEEEEECCCCcEEEEecCC----------CCceEEEE--cCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence 554 7999999999999888776653 45889999 89999999888 588999999998642
Q ss_pred ceEEEeecCCCeEEEEecCCCCEE-EEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC-------
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------- 321 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------- 321 (430)
+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.
T Consensus 296 -~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 296 -IDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp -EEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred -Eeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 4433 455688999999999755 5668899999999999998888863 678999999999998888876
Q ss_pred --------CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC-CCCceEecCCCC
Q 014154 322 --------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPMLEIQNGND 376 (430)
Q Consensus 322 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~~i~~~~~~~ 376 (430)
||.|++||+.+++.+..+. .+ ..+.+++|+|+|++ ++++ .|+.|++|+.+.
T Consensus 372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 372 GYLKKGLVLGKVYVIDTTTDTVKEFWE--AG--NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CTTSCCSSCCEEEEEETTTTEEEEEEE--CS--SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccccceEEEEEECCCCcEEEEec--CC--CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5799999999999888743 32 34689999999988 5554 599999998753
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.1e-31 Score=244.74 Aligned_cols=262 Identities=9% Similarity=0.030 Sum_probs=193.4
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
+.+++| +|||+++|+++.|++|+ |...++ .+.+ |...+.++.+.+. + .++
T Consensus 18 v~sv~~--SpDG~~iASas~D~TV~--d~~~~~---~l~g--------h~~~v~~V~FsPd---------g------~~~ 67 (588)
T 2j04_A 18 KNNLTW--ARDGTLYLTTFPDISIG--QPKYAK---DINC--------NSKNLFHVKEFPL---------E------FEN 67 (588)
T ss_dssp SCCEEE--CTTSCEEEECSSSEEEE--EECCCS---CCSS--------BGGGTEEEEEECC---------C------CCC
T ss_pred EEEEEE--CCCCCEEEEEcCCceee--cccccc---eecC--------CCccEEEEEECCC---------C------Ccc
Confidence 445555 88999999999999999 643333 2222 3345555555442 1 122
Q ss_pred eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP 213 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 213 (430)
...+|... ...+....+...|.+++|+|+|.+||+++.||.|++||.+. .+..+. +.... ..
T Consensus 68 ~~~~~~~~-----------~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~----~~ 129 (588)
T 2j04_A 68 KLDFELAQ-----------QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL----SS 129 (588)
T ss_dssp TTTTSCCC-----------SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS----TT
T ss_pred eEEEEeCC-----------CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc----cc
Confidence 22222211 11122334467899999999999999999999999999654 444444 32110 01
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------ceEEE----eecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSF----DFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
..+.+++| +|+|++|++|+.||+|++||+..+.. .+..+ .+|...|.+++|+|+| +++++.|+.|+
T Consensus 130 ~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr 205 (588)
T 2j04_A 130 RTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF 205 (588)
T ss_dssp TCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred ccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence 35899999 99999999999999999999998542 25666 5577899999999999 88889999999
Q ss_pred EEEccCCeE---Eeeee-CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec--ccc
Q 014154 284 SVDIRTGKL---LGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF--ADK 357 (430)
Q Consensus 284 iwd~~~~~~---~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--s~~ 357 (430)
+||+..++. ..++. +| ...|.+++|+ +.+|++++ ++.|++||+.+++.... ..+| ...+++++| +||
T Consensus 206 lWd~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~--~~gh-~~~V~~va~~~s~d 278 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL--KTGS-LENFHIIPLNHEKE 278 (588)
T ss_dssp EECCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--ECSC-CSCCCEEEETTCSS
T ss_pred EEECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--EcCC-CceEEEEEeeeCCC
Confidence 999988773 34564 55 7899999999 68899987 69999999998777433 2267 555799999 999
Q ss_pred ccc-cccCCCCceEecCCC
Q 014154 358 EVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 358 g~~-~~~~~d~~i~~~~~~ 375 (430)
+.. +++..+|. ++|..+
T Consensus 279 ~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEEECSSCEE-EEEESS
T ss_pred CCEEEEEcCCCC-EEEeec
Confidence 988 88888999 999876
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.8e-30 Score=233.44 Aligned_cols=275 Identities=9% Similarity=0.043 Sum_probs=207.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..|++|+.||.|+||++.... ..+...+.+|...+. ++.| +|++++|++|+.||.|++||+.+++.+... .
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~--~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~- 125 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSG---QTIPKAQQMHTGPVL--DVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQIA-Q- 125 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTS---CEEEEEEEECSSCEE--EEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEE-E-
T ss_pred eEEEEECCCCcEEEEEcCCCC---ceeEEEeccccCCEE--EEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceeec-c-
Confidence 579999999999999998620 133366777888854 5555 678889999999999999999888765532 2
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
+...+.++.+.+... ...+++++.++.+.+|++.... .+..+.. ...+.++.+. .
T Consensus 126 -------~~~~v~~~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~--~~~~~~~~~~--~ 180 (368)
T 3mmy_A 126 -------HDAPVKTIHWIKAPN------YSCVMTGSWDKTLKFWDTRSSN--------PMMVLQL--PERCYCADVI--Y 180 (368)
T ss_dssp -------CSSCEEEEEEEECSS------CEEEEEEETTSEEEEECSSCSS--------CSEEEEC--SSCEEEEEEE--T
T ss_pred -------ccCceEEEEEEeCCC------CCEEEEccCCCcEEEEECCCCc--------EEEEEec--CCCceEEEec--C
Confidence 345788888743222 1478999999999999986433 4444442 3456666665 4
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC--CEEEEEeCCCcEEEEECCCCC--cc
Q 014154 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQR--RP 250 (430)
Q Consensus 175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~--~~ 250 (430)
..+++++.++.+.+|++............. ....+.++.+...+.. ..+++++.|+.|++||++... ..
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESP-------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCS-------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhcccc-------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence 588889999999999998765544332221 1133555555323322 339999999999999999753 34
Q ss_pred eEEEeecCC------------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154 251 VMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 251 ~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 318 (430)
+..+..|.. .|++++|+|++++|++++.||.|++||+++++++..+.+| ...|++++|+|++.+|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNGNIFAY 332 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTSSCEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCCCeEEE
Confidence 667777765 7999999999999999999999999999999999999998 899999999999999999
Q ss_pred EeCCCcEEEEECC
Q 014154 319 CGLDSYLRFWDIK 331 (430)
Q Consensus 319 ~~~dg~i~iwd~~ 331 (430)
++.|+..+.|++-
T Consensus 333 ~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 333 ASSYDWSKGHEFY 345 (368)
T ss_dssp EECCCSTTCGGGC
T ss_pred Eeccccccccccc
Confidence 9998865555543
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=6.2e-30 Score=239.88 Aligned_cols=253 Identities=15% Similarity=0.195 Sum_probs=201.1
Q ss_pred CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcccc--CCCcceEEeeecCCCceEEEEEcCCCC-EEE
Q 014154 102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--SSCSTVKSWNVCASGTIAFSKVDISEK-FSL 178 (430)
Q Consensus 102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~--~~~~~i~~~~~~~~~~i~~~~~~~~~~-~l~ 178 (430)
+.+.+..+.+.+... ..+++++.+|.+.+|++........ .....+..+. .|...|.+++|+|++. +|+
T Consensus 127 h~~~v~~l~~~p~~~-------~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 127 HEGEVNRARYMPQNA-------CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp ESSCCSEEEEETTEE-------EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEE
T ss_pred CCCcEEEEEECCCCC-------cEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEE
Confidence 345666677666433 4888999999999999875322110 1122344444 6788999999999988 999
Q ss_pred EEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCC--
Q 014154 179 FGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQR-- 248 (430)
Q Consensus 179 ~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~-- 248 (430)
+|+.||.|++|++.++.. ...+..| ...|.+++| +| ++.+|++++.|+.|++||+++..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h---------~~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGH---------TAVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCC---------SSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCC---------CCCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 999999999999987322 2333333 367999999 67 67899999999999999999863
Q ss_pred cceEEEeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcE
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYL 325 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i 325 (430)
.++..+..|...|++++|+|++. +|++|+.||.|++||+++ .+++..+..| ...|.+++|+|++. +|++++.|+.|
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 46778889999999999999987 688999999999999998 5678888888 89999999999995 68999999999
Q ss_pred EEEECCCC--------------ceeeEEEeeccccceEEeeecccccc-c-cccCCCCceEecCCCCC
Q 014154 326 RFWDIKTR--------------QLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 326 ~iwd~~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~~~~~~~ 377 (430)
+|||+... +++.. +.+| ...|.+++|+|++. + ++++.|+.|++|+....
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFI--HGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEE--CCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEeCCCCccccCccccccCCcceEEE--cCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999872 34443 5566 55579999999998 5 88999999999998653
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=231.17 Aligned_cols=262 Identities=9% Similarity=0.017 Sum_probs=194.0
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC---------C
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---------G 85 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~---------~ 85 (430)
..+++|+.||.|++||+..+ +.+..+. ...+. ++.+ +|+ +++++.|++|++|+... +
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~-----~~~~~~~--~~~v~--~~~~--~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDS-----KTITTIT--TPNPR--TGGE--HPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEETTEEEEEEESSS-----SCEEEEE--EECCC--TTCC--CCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred CEEEEECCCCcEEEEECCCC-----cEEEEEe--cCCce--eeee--CCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 56899999999999999987 4554444 23333 3333 554 99999999999997753 2
Q ss_pred cccceeeccCCCCCCCCCCceEEEEEee--cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154 86 DLRVAISNAGDSGAQPEDDGIVGLHLFK--RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
+.+..+. .++.+.+.++.+.+ .. ..+++++.+|.+.+|++.... .+.+....+..
T Consensus 115 ~~~~~~~-------~~~~~~v~~~~~~~~~~~--------~~l~s~s~dg~i~~wd~~~~~--------~~~~~~~~~~~ 171 (343)
T 3lrv_A 115 KVLREIE-------VDSANEIIYMYGHNEVNT--------EYFIWADNRGTIGFQSYEDDS--------QYIVHSAKSDV 171 (343)
T ss_dssp CEEEEEE-------CCCSSCEEEEECCC---C--------CEEEEEETTCCEEEEESSSSC--------EEEEECCCSSC
T ss_pred ceeEEee-------cCCCCCEEEEEcCCCCCC--------CEEEEEeCCCcEEEEECCCCc--------EEEEEecCCCC
Confidence 2222222 12345677777765 33 488999999999999986432 44555445666
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EeeCC-CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKP-PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
.+.+++|+|++.+|++|+.||.|++||+++++.. ..+.. |. ..|.+++| +|++.+|++++ ++.|++
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~---------~~v~~l~f--s~~g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE---------AKIKEVKF--ADNGYWMVVEC-DQTVVC 239 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT---------SCEEEEEE--CTTSSEEEEEE-SSBEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC---------CCEEEEEE--eCCCCEEEEEe-CCeEEE
Confidence 8999999999999999999999999999998876 56655 43 78999999 89999999999 559999
Q ss_pred EECCCCCcceEEEe---ecCCCe--EEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC---C
Q 014154 242 YDTSAQRRPVMSFD---FRETPI--KAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---T 312 (430)
Q Consensus 242 wd~~~~~~~~~~~~---~~~~~i--~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~---~ 312 (430)
||++.... +..+. .|...+ .+++|+|++++|++++. |+.|++|++.+....... .++..+.|+| +
T Consensus 240 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 240 FDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTAD 313 (343)
T ss_dssp EETTSSTT-CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CC
T ss_pred EEcCCCCc-ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccc
Confidence 99998653 33222 233344 36999999999999998 999999999765543332 3577888998 8
Q ss_pred CCeEEEEeCCCcEEEEECC
Q 014154 313 LPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~ 331 (430)
...|++++.|+.++++-..
T Consensus 314 ~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CCEEEEEEETTEEEEEEEC
T ss_pred cceeEEEecCCceEEEEec
Confidence 8899999999999987543
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.8e-30 Score=240.43 Aligned_cols=228 Identities=11% Similarity=0.071 Sum_probs=155.3
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEe--eecCCCceEEEEEcC--------CCCEEEEEeCCCeEEEEECCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDI--------SEKFSLFGGKGVEVNVWDLDK 193 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~ 193 (430)
..+++++.|+++++|++...... ..... ...|...|.+++|+| ++++|++++.|++|+|||+.+
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETII------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEE------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CEEEEEeCCCcEEEEECCCCccc------eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 35666777777777776533210 00111 124778899999987 788999999999999999988
Q ss_pred CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcce---------------------
Q 014154 194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPV--------------------- 251 (430)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~--------------------- 251 (430)
+..+..+..+. ..+.+++| +|++ .+|++++.|++|++||+++++...
T Consensus 176 ~~~~~~~~~~~---------~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 176 EGPILAGYPLS---------SPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TEEEEEEEECS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CceeeeecCCC---------CCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 87776665554 67999999 6776 589999999999999998754311
Q ss_pred ---EEEeecCCCeEEEEec-CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEE------------------e
Q 014154 252 ---MSFDFRETPIKAVAEE-PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA------------------R 309 (430)
Q Consensus 252 ---~~~~~~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~------------------~ 309 (430)
....+|...+.++.|+ |+++.|++++.|+.+++||+..++....+..| ...+..+. |
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEEccccccccccCcceeEEE
Confidence 1123566788899986 89999999999999999999988776666554 33333333 3
Q ss_pred cC--CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154 310 HP--TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 310 ~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
+| ++.++++|+.||.|++||+.+++.+.. +.+| ...|.+++|+|||++ ++++++| +.+|.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~--~~~~-~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSI--PIQL-GMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEE--EEEC-SSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEE--ecCC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 33 334677888999999999999988876 4455 456899999999999 6565554 55554
No 119
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1e-29 Score=236.38 Aligned_cols=235 Identities=12% Similarity=0.075 Sum_probs=189.6
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ee
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC-------EK 196 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-------~~ 196 (430)
.+++++.+|.+.||++..... ....+..+. .|...|.+++|+| ++++|++|+.||.|++||+.++ +.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~----~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 123 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGR----VDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP 123 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEE----CCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSC
T ss_pred EEEEEcCCCEEEEEECccCCC----CCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCc
Confidence 334568889999999743211 011222232 5788999999999 9999999999999999999887 44
Q ss_pred eEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEE--eecCCCeEEEEecCCCCEE
Q 014154 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNI 273 (430)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~sp~~~~l 273 (430)
+..+..|. ..|.+++| +|++ .+|++++.|+.|++||+.+++ .+..+ ..|...|.+++|+|++++|
T Consensus 124 ~~~~~~h~---------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 124 VITLEGHT---------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp SEEEECCS---------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred eEEecCCC---------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCEE
Confidence 55555544 77999999 7887 699999999999999999865 47777 7799999999999999999
Q ss_pred EEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeEEEE---eCCCcEEEEECCCCce-eeEEEeeccccce
Q 014154 274 YIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASC---GLDSYLRFWDIKTRQL-LSAVFLKQHLNEV 348 (430)
Q Consensus 274 ~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~ 348 (430)
++++.|+.|++||+++++.+..+ ..|....+.++.|+|++.+|++| +.|+.|++||+++++. +... ...+ ...
T Consensus 192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~-~~~ 269 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDT-SSG 269 (402)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCC-CSS
T ss_pred EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccC-CCc
Confidence 99999999999999999999988 67733348999999999999999 7999999999998765 3332 2223 344
Q ss_pred EEeeeccccccc-c-ccCCCCceEecCCCCCc
Q 014154 349 VFDSAFADKEVA-N-AAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 349 v~~~~~s~~g~~-~-~~~~d~~i~~~~~~~~~ 378 (430)
+.+++|+|++.+ + +++.|+.|++|+.....
T Consensus 270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 789999999988 3 56689999999987643
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.2e-27 Score=221.62 Aligned_cols=266 Identities=12% Similarity=0.073 Sum_probs=210.9
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
.++++++.|+.|++||+.+++.+..+..+ ..+.++.+.+... ..+++++.++.+.+|++....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~-------~l~~~~~~d~~i~v~d~~~~~- 65 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGT-------KVYVANAHSNDVSIIDTATNN- 65 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSS-------EEEEEEGGGTEEEEEETTTTE-
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC---------CCcceEEECCCCC-------EEEEECCCCCeEEEEECCCCe-
Confidence 36788999999999999999888777653 3456666655433 234677799999999975322
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
.+..+. ....+.+++|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++| +
T Consensus 66 -------~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~--s 124 (391)
T 1l0q_A 66 -------VIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLAL--S 124 (391)
T ss_dssp -------EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEE--C
T ss_pred -------EEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------CCcceEEE--C
Confidence 333333 345899999999999886554 6799999999999887776543 45789999 8
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEE-EEEeCCCcEEEEEccCCeEEeeeeCCCCC
Q 014154 225 DDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 225 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 302 (430)
|+++.| ++++.++.|++||+.+++ .+..+..+ ..+.+++|+|++++| ++++.++.|++||+++++.+..+.. ..
T Consensus 125 ~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~ 200 (391)
T 1l0q_A 125 PDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EA 200 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SS
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CC
Confidence 999877 678889999999999865 46666655 567999999999888 5677889999999999998877765 46
Q ss_pred CeEEEEecCCCCeEEEEe---CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154 303 SIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~ 377 (430)
.+.+++|+|++++|++++ .++.|++||+.+++.+..+ ..+ . .+.+++|+|+|++ ++++.|+.|++|+....
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~-~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG-P-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--ecC-C-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 789999999999998888 6899999999999888774 334 2 2588999999986 56688999999998753
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-28 Score=228.96 Aligned_cols=243 Identities=8% Similarity=0.058 Sum_probs=187.0
Q ss_pred eeeeeecCCCCCcee-EEeecCCeEEEecCC--CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154 54 VLAASIDDSQNDPLL-AVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT 130 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 130 (430)
+.++.| +|+|++| ++|+.||.|+|||+. +++.+..+..+ .+...+.++.+.+.. ..+++++
T Consensus 105 v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~--------~~l~~~~ 168 (450)
T 2vdu_B 105 IRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAEDD--------TTVIIAD 168 (450)
T ss_dssp EEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECTTS--------SEEEEEE
T ss_pred eEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcCCC--------CEEEEEe
Confidence 556666 8889986 889999999999998 78877776532 123467777776544 4889999
Q ss_pred cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCC
Q 014154 131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKN 206 (430)
Q Consensus 131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~ 206 (430)
.+|.+.+|++....... ..+..+. .|...|.+++|+|+ +++|++++.|+.|++||+.++..+.. +..|.
T Consensus 169 ~~g~v~~~~~~~~~~~~----~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~-- 241 (450)
T 2vdu_B 169 KFGDVYSIDINSIPEEK----FTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK-- 241 (450)
T ss_dssp TTSEEEEEETTSCCCSS----CCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--
T ss_pred CCCcEEEEecCCccccc----ccceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--
Confidence 99999999875332100 0111222 46789999999999 99999999999999999998887766 33443
Q ss_pred CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-------------------------cCCCe
Q 014154 207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------RETPI 261 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~~i 261 (430)
..|.+++| + ++.+|++++.|+.|++||+.+++. +..+.. ....|
T Consensus 242 -------~~v~~~~~--s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 242 -------HFVSSICC--G-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV 310 (450)
T ss_dssp -------SCEEEEEE--C-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred -------CceEEEEE--C-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence 77999999 7 999999999999999999998663 555552 23578
Q ss_pred EEEEecCCCCEEEEEe-CCCcEEEEEc--cCC---eEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEE
Q 014154 262 KAVAEEPDSFNIYIGN-GSGDLASVDI--RTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWD 329 (430)
Q Consensus 262 ~~~~~sp~~~~l~~~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd 329 (430)
.+++|+|++++|++++ .++.|++||+ .++ +.+..+..+ ..|.+++|+|++.++++++. +..|.+|.
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 9999999999999999 8999999999 665 677778875 68999999996544443333 45578887
Q ss_pred CCC
Q 014154 330 IKT 332 (430)
Q Consensus 330 ~~~ 332 (430)
+..
T Consensus 389 ~~~ 391 (450)
T 2vdu_B 389 YNL 391 (450)
T ss_dssp EET
T ss_pred EEc
Confidence 653
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.7e-29 Score=233.93 Aligned_cols=246 Identities=9% Similarity=-0.043 Sum_probs=167.4
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeec----CCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID----DSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
..+++|+.|++|+|||+..+.......+..+.+|.+.|..++|++. ...||++||+|+.|++|+|||+.++..+..
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 4688999999999999998622222345568899999888888752 234788999999999999999865432211
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
+ ..+...+.+++|
T Consensus 182 ~-------------------------------------------------------------------~~~~~~v~~v~~ 194 (393)
T 4gq1_A 182 G-------------------------------------------------------------------YPLSSPGISVQF 194 (393)
T ss_dssp E-------------------------------------------------------------------EECSSCEEEEEE
T ss_pred e-------------------------------------------------------------------cCCCCCcEEEEE
Confidence 1 123467788899
Q ss_pred cCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC----------------CCCcCCcceeEEEEeecCCCCEEEEE
Q 014154 171 DISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS----------------LGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 171 ~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~~~~~~~~~~~~~l~s~ 233 (430)
+|++ .+|++++.|++|++||+.+++.......+.... ....+...+.++.|. .+++..|+++
T Consensus 195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~ 273 (393)
T 4gq1_A 195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAM 273 (393)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEE
T ss_pred CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEE
Confidence 9876 478899999999999998776544332211100 011244678888885 6899999999
Q ss_pred eCCCcEEEEECCCCCcceEEEeecCCCeEEEEe------------------cC--CCCEEEEEeCCCcEEEEEccCCeEE
Q 014154 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE------------------EP--DSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~------------------sp--~~~~l~~~~~d~~i~iwd~~~~~~~ 293 (430)
+.|+.+++||+..+.. ...+..|...+..+.+ +| ++.++++|+.||.|++||+.+++++
T Consensus 274 s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 274 CKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp CTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred eCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 9999999999987542 3444444433333333 22 3446777889999999999999988
Q ss_pred eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
..+.+| ..+|++++|+|+|++||+++.+| +.+|.+.
T Consensus 353 ~~~~~~-~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 353 SIPIQL-GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEEC-SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEecCC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 888887 78999999999999999999776 6666653
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=252.17 Aligned_cols=236 Identities=15% Similarity=0.121 Sum_probs=189.2
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
..+++|+.||.|+||++..+ ..+.+..+.+|...|..++++. .+++++|++|+.||.|++||+.+++...
T Consensus 22 ~~latg~~dg~I~vwd~~~~---~~~~~~~l~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I~vwd~~~~~~~~----- 91 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVLIWKEENGRWSQ----- 91 (753)
T ss_dssp CCEEEEETTTEEEEEEEETT---EEEEEEEECCCSSCEEEEEECC--TTSCSEEEEEETTSCEEEEEEETTEEEE-----
T ss_pred CeEEEEECCCcEEEEecCCC---CCccceeccCCcCceEEEEecC--CCCCCEEEEEeCCCeEEEEECCCCcccc-----
Confidence 46899999999999999842 1256778889999966666654 3348899999999999999976543100
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS- 173 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~- 173 (430)
+..+ ..|...|.+++|+|+
T Consensus 92 -----------------------------------------------------------~~~~-~~h~~~V~~v~~sp~~ 111 (753)
T 3jro_A 92 -----------------------------------------------------------IAVH-AVHSASVNSVQWAPHE 111 (753)
T ss_dssp -----------------------------------------------------------EEEE-CCCSSCEEEEEECCGG
T ss_pred -----------------------------------------------------------cccc-cCCCCCeEEEEECCCC
Confidence 0000 135678999999998
Q ss_pred -CCEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecC-------------CCCEEEEEeCCC
Q 014154 174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDH 237 (430)
Q Consensus 174 -~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~s~~~dg 237 (430)
++++++|+.||.|++||+.++.. ...+..+ ...|.+++| +| ++.+|++|+.||
T Consensus 112 ~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~---------~~~v~~l~~--~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH---------AIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp GCSEEEEEETTSEEEEEECCSSSCCCCEEEECC---------SSCEEEEEE--CCCC---------CGGGCCEEEEETTS
T ss_pred CCCEEEEEeCCCcEEEEEeecCCCcceeEeecC---------CCceEEEEe--cCcccccccccccCCCCCEEEEEECCC
Confidence 99999999999999999987632 2233333 367999999 66 588999999999
Q ss_pred cEEEEECCCCC---cceEEEeecCCCeEEEEecCC---CCEEEEEeCCCcEEEEEccCCe-----EEeeeeCCCCCCeEE
Q 014154 238 QVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRS 306 (430)
Q Consensus 238 ~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~ 306 (430)
.|++||++++. .+...+.+|...|++++|+|+ +.+|++++.||.|++||+++++ .+.....| ...|++
T Consensus 181 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~ 259 (753)
T 3jro_A 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR 259 (753)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCC
T ss_pred eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEE
Confidence 99999998754 345677889999999999999 8999999999999999999864 23333445 789999
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
++|+|++.+|++++.||.|++|++.+
T Consensus 260 l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 260 ASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999999999874
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-29 Score=231.90 Aligned_cols=253 Identities=11% Similarity=0.034 Sum_probs=189.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
-.++|++.|++|+ |... ...+.+|...+..++| +|+| .++.+.+|+. +....+..
T Consensus 28 ~~iASas~D~TV~--d~~~--------~~~l~gh~~~v~~V~F----sPdg-------~~~~~~~~~~---~~~~~~~~- 82 (588)
T 2j04_A 28 TLYLTTFPDISIG--QPKY--------AKDINCNSKNLFHVKE----FPLE-------FENKLDFELA---QQNGLLNS- 82 (588)
T ss_dssp CEEEECSSSEEEE--EECC--------CSCCSSBGGGTEEEEE----ECCC-------CCCTTTTSCC---CSSCSSTT-
T ss_pred CEEEEEcCCceee--cccc--------cceecCCCccEEEEEE----CCCC-------CcceEEEEeC---CCceEeec-
Confidence 4688999999999 6443 3344688888766666 4555 4555555553 32222211
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC----CCceEEEEE
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKV 170 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~----~~~i~~~~~ 170 (430)
.+.+.+.++.|.+.. ..+++++.+|.+.+|+.. +.+.... .+ ...+.+++|
T Consensus 83 ------~~~~~V~~vawSPdG--------~~LAs~s~dg~V~iwd~~----------~~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 83 ------QPVCYPRVCKPSPID--------DWMAVLSNNGNVSVFKDN----------KMLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp ------SCSCCEEEEEECSSS--------SCEEEEETTSCEEEEETT----------EEEEECC-CSSCSTTTCEEEEEE
T ss_pred ------CCCCcEEEEEECCCC--------CEEEEEeCCCcEEEEeCC----------ceeeecc-CCCccccccEEEEEE
Confidence 124678877777654 489999999999999842 1333333 22 125999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 171 DISEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
+|+|++|++|+.||+|++||+.++.. +..+..+.. .|..+|.+++| +|++ +++++.|+.|++||
T Consensus 138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~-----gh~~~V~sVaw--SPdg--Laass~D~tVrlWd 208 (588)
T 2j04_A 138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA-----GSKDWVTHIVW--YEDV--LVAALSNNSVFSMT 208 (588)
T ss_dssp CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT-----TCCCCEEEEEE--ETTE--EEEEETTCCEEEEC
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc-----cccccEEEEEE--cCCc--EEEEeCCCeEEEEE
Confidence 99999999999999999999988742 455432221 13378999999 7888 88889999999999
Q ss_pred CCCCCc--ceEEE-eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe--cCCCCeEEE
Q 014154 244 TSAQRR--PVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIAS 318 (430)
Q Consensus 244 ~~~~~~--~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s 318 (430)
+..... ....+ .+|...|.+++|+ ++.|++++ ++.|++||+.+++......+| ...|..+.| +|++..|++
T Consensus 209 ~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~ 284 (588)
T 2j04_A 209 VSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLM 284 (588)
T ss_dssp CCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEE
T ss_pred CCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEE
Confidence 987552 23556 4788899999999 68888887 699999999988874444476 899999999 999999999
Q ss_pred EeCCCcEEEEECC
Q 014154 319 CGLDSYLRFWDIK 331 (430)
Q Consensus 319 ~~~dg~i~iwd~~ 331 (430)
++.||+ ++|...
T Consensus 285 a~edG~-klw~~d 296 (588)
T 2j04_A 285 SNKTSY-KVLLED 296 (588)
T ss_dssp CSSCEE-EEEESS
T ss_pred EcCCCC-EEEeec
Confidence 999999 999874
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.4e-27 Score=216.38 Aligned_cols=262 Identities=8% Similarity=-0.034 Sum_probs=185.9
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeecc
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
.+++|+.+ .++||++..+ +....... ..+.++++.+ +++++ ++|+.|++|+|||+.+++.+..+..
T Consensus 33 ~la~g~~~-~~~iw~~~~~-----~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~- 99 (355)
T 3vu4_A 33 CLILSTLK-SFEIYNVHPV-----AHIMSQEM--RHLSKVRMLH----RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV- 99 (355)
T ss_dssp EEEEECSS-EEEEEEETTE-----EEEEEEEC--SCCCEEEECT----TSSEEEEECSSTTEEEEEETTTTEEEEEEEC-
T ss_pred EEEEEcCC-EEEEEecCCc-----ceeeeeec--CCeEEEEEcC----CCCEEEEEECCccEEEEEECCCCcEEEEEEC-
Confidence 45555555 5899998875 33333222 2355666654 34455 5688889999999999988877653
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~ 174 (430)
...+.++.+.+ ..++. ..++.+.+|++...+. .+..+.. ....+++++
T Consensus 100 --------~~~v~~v~~~~----------~~~~~-~~~~~i~i~d~~~~~~-------~~~~~~~----~~~~~~~s~-- 147 (355)
T 3vu4_A 100 --------DAPVKDLFLSR----------EFIVV-SYGDVISVFKFGNPWK-------RITDDIR----FGGVCEFSN-- 147 (355)
T ss_dssp --------SSCEEEEEECS----------SEEEE-EETTEEEEEESSTTCC-------BSSCCEE----EEEEEEEET--
T ss_pred --------CCceEEEEEcC----------CEEEE-EEcCEEEEEECCCCce-------eeEEecc----CCceEEEEc--
Confidence 13666666532 23333 3578899999764411 2222221 334456666
Q ss_pred CEEEE--EeCCCeEEEEECCCCe----------------eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154 175 KFSLF--GGKGVEVNVWDLDKCE----------------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 175 ~~l~~--~~~d~~i~~~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 236 (430)
.++++ |+.+|.|++||+.++. .+..+..|. ..|.+++| +|++.+|++|+.|
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---------~~v~~~~~--s~~g~~l~s~s~d 216 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---------NPIKMVRL--NRKSDMVATCSQD 216 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS---------SCEEEEEE--CTTSSEEEEEETT
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---------CceEEEEE--CCCCCEEEEEeCC
Confidence 66666 5889999999998765 144555554 78999999 8999999999999
Q ss_pred Cc-EEEEECCCCCcceEEEe-e-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE--ee----------------
Q 014154 237 HQ-VRLYDTSAQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GC---------------- 295 (430)
Q Consensus 237 g~-i~iwd~~~~~~~~~~~~-~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~---------------- 295 (430)
++ |++||+++++. +..+. + |...|.+++|+|++++|++++.|+.|++||++.+... ..
T Consensus 217 ~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
T 3vu4_A 217 GTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL 295 (355)
T ss_dssp CSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred CCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence 98 99999998664 77777 5 8999999999999999999999999999999765311 11
Q ss_pred ----eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154 296 ----FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 296 ----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~ 334 (430)
+..........++|++++.+|++++.||.+++|++..+.
T Consensus 296 ~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 296 CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 111112234678999999999999999999999986543
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.2e-26 Score=217.72 Aligned_cols=268 Identities=12% Similarity=0.081 Sum_probs=207.1
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeee-----ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVE-----RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV 89 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~ 89 (430)
..+++++.++.|++||+.++ +... .+.+|...+.. +.+ +|++.++++++.|+.|++||+.+++.+.
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSG-----QTVRLSPPEKYKKKLGFVET--ISI--PEHNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTC-----CEEEECCCHHHHTTCCEEEE--EEE--GGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-----eEeeecCcccccccCCceeE--EEE--cCCCEEEEEECCCCEEEEEECCCceEEE
Confidence 34667778899999999986 4444 34567666444 444 6678899999999999999999888777
Q ss_pred eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154 90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
.+..+ ...+.++.+.+... ..++++..++.+.+|++.... .+ ........+.+++
T Consensus 206 ~~~~~--------~~~~~~~~~~~~~~-------~l~~~~~~~~~i~~~d~~~~~--------~~--~~~~~~~~~~~~~ 260 (433)
T 3bws_A 206 TVDLT--------GKWSKILLYDPIRD-------LVYCSNWISEDISVIDRKTKL--------EI--RKTDKIGLPRGLL 260 (433)
T ss_dssp EEECS--------SSSEEEEEEETTTT-------EEEEEETTTTEEEEEETTTTE--------EE--EECCCCSEEEEEE
T ss_pred EEcCC--------CCCeeEEEEcCCCC-------EEEEEecCCCcEEEEECCCCc--------EE--EEecCCCCceEEE
Confidence 76542 23666666655433 233566689999999975321 22 2334456799999
Q ss_pred EcCCCCEEEEEe--------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEE
Q 014154 170 VDISEKFSLFGG--------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR 240 (430)
Q Consensus 170 ~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~ 240 (430)
|+|++++|++++ .|+.|++||+.+++.+..+.. ...+.+++| +|+++ ++++++.++.|+
T Consensus 261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~----------~~~~~~~~~--~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP----------PGNKRHIVS--GNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE----------EECEEEEEE--CSSTTEEEEEETTTTEEE
T ss_pred EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC----------CCCcceEEE--CCCCCEEEEEecCCCEEE
Confidence 999999999888 488999999998877665422 145788999 88886 456668999999
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC---------------CCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
+||+.+++ .+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.+..+..+ ..+.
T Consensus 329 v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~ 404 (433)
T 3bws_A 329 VYDLKEKK-VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPT 404 (433)
T ss_dssp EEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEE
T ss_pred EEECCCCc-EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCc
Confidence 99999754 355554 6678999999999999998876 579999999999999888874 5789
Q ss_pred EEEecCCCCeEEEEeC-CCcEEEEECCC
Q 014154 306 SIARHPTLPIIASCGL-DSYLRFWDIKT 332 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~-dg~i~iwd~~~ 332 (430)
+++|+|++++|++++. |+.|++|++..
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999999988875 99999999863
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.5e-25 Score=214.98 Aligned_cols=313 Identities=12% Similarity=0.127 Sum_probs=226.8
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC--CCCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP--LNGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~--~~~~~~~~~~ 92 (430)
..++++..|++|.+||..++ +++.++..+.. + ..+.+ +|+|++|++++.|+.|.+||+ .+++.+..+.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~-----~~~~~i~~g~~-~--~~v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA-V--HISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC-----CEEEEEECSTT-E--EEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred EEEEEEcCCCeEEEEECCCc-----eEEEEEecCcc-c--ceEEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 45678888999999999987 67777763322 3 34445 789999999999999999999 7777776665
Q ss_pred ccCCCCCCCCCCceEEEEEee----cCcccccccCceEEEEc-cCCeeEEEEeeecCccccCCCcceEEeeec-------
Q 014154 93 NAGDSGAQPEDDGIVGLHLFK----RQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC------- 160 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------- 160 (430)
. ......+.+.+ .. ..++++. .++++.||+..... .++.+...
T Consensus 220 ~---------g~~p~~va~sp~~~~dg--------~~l~v~~~~~~~v~v~D~~t~~--------~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 220 I---------GIEARSVESSKFKGYED--------RYTIAGAYWPPQFAIMDGETLE--------PKQIVSTRGMTVDTQ 274 (543)
T ss_dssp C---------CSEEEEEEECCSTTCTT--------TEEEEEEEESSEEEEEETTTCC--------EEEEEECCEECSSSC
T ss_pred c---------CCCcceEEeCCCcCCCC--------CEEEEEEccCCeEEEEeccccc--------cceeecccCcccCcc
Confidence 3 13455566654 32 3555555 58999999864322 34444321
Q ss_pred ---CCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154 161 ---ASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 161 ---~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 234 (430)
....+..+.++|++.. +++...++.|.+||+.+.+.+. .+.. ...+..+.| +|++++|++++
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----------~~~~~~~~~--spdg~~l~va~ 342 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----------APFLHDGGW--DSSHRYFMTAA 342 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----------CSSCCCEEE--CTTSCEEEEEE
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----------CcCccCceE--CCCCCEEEEEe
Confidence 1236889999997655 5566778999999998765433 2221 145778899 89999776655
Q ss_pred -CCCcEEEEECCCCCcceEEEee----cCCCeEEEEecCC-CCEEEEEe-CCCcEEEEEccC-------CeEEeeeeCCC
Q 014154 235 -NDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPD-SFNIYIGN-GSGDLASVDIRT-------GKLLGCFIGKC 300 (430)
Q Consensus 235 -~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~sp~-~~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~ 300 (430)
.+++|.+||+.+++ .+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ .+++.++.+|
T Consensus 343 ~~~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~- 419 (543)
T 1nir_A 343 NNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ- 419 (543)
T ss_dssp GGGTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-
T ss_pred cCCCeEEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-
Confidence 58899999999865 4666664 44333333 4777 55666665 579999999998 8999999998
Q ss_pred CCCeEEEEecCCCCeEEEEe-------CCCcEEEEECCCCcee-eEEEe------eccccceEEeeeccccccc-ccc--
Q 014154 301 SGSIRSIARHPTLPIIASCG-------LDSYLRFWDIKTRQLL-SAVFL------KQHLNEVVFDSAFADKEVA-NAA-- 363 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~-~~~~~------~~~~~~~v~~~~~s~~g~~-~~~-- 363 (430)
...+..++|+|++++|++++ .+++|.|||+.+++.. ..+.+ ..+ ...+..++|+|+|+. .++
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCEEEEEEECSSSSEEEEEEE
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-CCceEeccCCCCCCEEEEEee
Confidence 77889999999999999987 2779999999999887 33211 222 456799999999998 322
Q ss_pred ---CCCCceEecCCCCCc
Q 014154 364 ---ADAPMLEIQNGNDTQ 378 (430)
Q Consensus 364 ---~~d~~i~~~~~~~~~ 378 (430)
+.++.|.|||.....
T Consensus 499 ~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CCTTSCCEEEEEETTTTE
T ss_pred cCCCCCCeEEEEECCCce
Confidence 257999999987754
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.6e-24 Score=200.27 Aligned_cols=290 Identities=9% Similarity=0.014 Sum_probs=207.1
Q ss_pred eeeec----CCC----ceEEEEc--cCCCCCcceee--eecCCCCCCcceeeeeec----------CCCCCceeEEeecC
Q 014154 17 ALTFD----SLG----LIKVIEA--RGEHGGVPKVV--ERWGDPHSSNCVLAASID----------DSQNDPLLAVARKN 74 (430)
Q Consensus 17 l~t~~----~dg----~i~vw~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~p~g~~l~~g~~d 74 (430)
+++|+ .+| .|+|||+ .++ +.+ ..+.+|...+..+++.+. ..+.+..++.++.+
T Consensus 78 ~~~g~~~~~~~G~~~~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~ 152 (415)
T 2hqs_A 78 VVVGQVTPNPDGSYNVAYQLVDTGGAPG-----TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQT 152 (415)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECSSSTT-----CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEEEeCCCCCC-----CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEec
Confidence 44665 567 9999999 776 444 457777776655544421 11224567666654
Q ss_pred ------CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC---eeEEEEeeecCc
Q 014154 75 ------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKV 145 (430)
Q Consensus 75 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~ 145 (430)
+.|++||+. +.....+..+ ...+.++.|.+.. ..++.++.++ .+.+|++...
T Consensus 153 ~~~~~~~~i~i~d~~-g~~~~~l~~~--------~~~v~~~~~Spdg--------~~la~~s~~~~~~~i~~~d~~tg-- 213 (415)
T 2hqs_A 153 NGGQFPYELRVSDYD-GYNQFVVHRS--------PQPLMSPAWSPDG--------SKLAYVTFESGRSALVIQTLANG-- 213 (415)
T ss_dssp SSSSCCEEEEEEETT-SCSCEEEEEE--------SSCEEEEEECTTS--------SEEEEEECTTSSCEEEEEETTTC--
T ss_pred CCCCccceEEEEcCC-CCCCEEEeCC--------CCcceeeEEcCCC--------CEEEEEEecCCCcEEEEEECCCC--
Confidence 799999996 4445555443 2466666665543 3677777664 8889987532
Q ss_pred cccCCCcceEEeeecCCCceEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
..... ..+...+.+++|+|++++|+ +++.++. |++||+.+++. ..+..+. ..+.+++|
T Consensus 214 -------~~~~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---------~~~~~~~~- 274 (415)
T 2hqs_A 214 -------AVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR---------SNNTEPTW- 274 (415)
T ss_dssp -------CEEEE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS---------SCEEEEEE-
T ss_pred -------cEEEe-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC---------CcccceEE-
Confidence 22222 24567899999999999888 5665554 99999988765 3444432 56889999
Q ss_pred ecCCCCEEEEEeC-CC--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeee
Q 014154 223 SIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCF 296 (430)
Q Consensus 223 ~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~ 296 (430)
+|+++.|++++. ++ .|.+||+.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++.. .+
T Consensus 275 -spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l 350 (415)
T 2hqs_A 275 -FPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL 350 (415)
T ss_dssp -CTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred -CCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence 899999988886 45 67788988754 45556677789999999999999988764 58999999988874 45
Q ss_pred eCCCCCCeEEEEecCCCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154 297 IGKCSGSIRSIARHPTLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 359 (430)
..+ . .+.+++|+|+|++|++++.++ .|++||+.. ..... +.++ ...|.+++|+|...
T Consensus 351 ~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~--l~~~-~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 351 SST-F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKAR--LPAT-DGQVKFPAWSPYLH 410 (415)
T ss_dssp CCS-S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEE--CCCS-SSEEEEEEECCCCC
T ss_pred cCC-C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEE--eeCC-CCCCcCCccccccc
Confidence 554 3 889999999999999988777 799999974 44444 5566 55679999999654
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=3.4e-23 Score=198.61 Aligned_cols=290 Identities=12% Similarity=0.047 Sum_probs=211.6
Q ss_pred cceeeecCCCceEEEEc--cCCCCCcceeeeecCCCCCCcceeeeeecCCC----CCceeEEee-cCCeEEEecCCCCcc
Q 014154 15 LRALTFDSLGLIKVIEA--RGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ----NDPLLAVAR-KNGLTDILNPLNGDL 87 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~g~~l~~g~-~dg~i~iwd~~~~~~ 87 (430)
-.|++++.|+.|++||+ .++ +++.++..+. . ...+.+ +| +|++|++++ .+++|.|||..++++
T Consensus 191 ~~l~v~~~d~~V~v~D~~~~t~-----~~~~~i~~g~-~--p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 191 RYLLVIGRDARIDMIDLWAKEP-----TKVAEIKIGI-E--ARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp CEEEEEETTSEEEEEETTSSSC-----EEEEEEECCS-E--EEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred CEEEEECCCCeEEEEECcCCCC-----cEEEEEecCC-C--cceEEe--CCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 46888899999999999 665 6666666332 2 345555 78 999999987 489999999999988
Q ss_pred cceeeccCC----CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154 88 RVAISNAGD----SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG 163 (430)
Q Consensus 88 ~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~ 163 (430)
+..+..... ..+. ....+..+.+.+... ..+++...++.+.+|++.... .+.+..+.+..
T Consensus 261 ~~~i~~~g~~~~~~~~~-~~~~v~~i~~s~~~~-------~~~vs~~~~g~i~vvd~~~~~--------~l~~~~i~~~~ 324 (543)
T 1nir_A 261 KQIVSTRGMTVDTQTYH-PEPRVAAIIASHEHP-------EFIVNVKETGKVLLVNYKDID--------NLTVTSIGAAP 324 (543)
T ss_dssp EEEEECCEECSSSCCEE-SCCCEEEEEECSSSS-------EEEEEETTTTEEEEEECTTSS--------SCEEEEEECCS
T ss_pred ceeecccCcccCccccc-cCCceEEEEECCCCC-------EEEEEECCCCeEEEEEecCCC--------cceeEEeccCc
Confidence 887764210 0001 112455555554333 466777788899999875322 33334445567
Q ss_pred ceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEe-CCCcEE
Q 014154 164 TIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGT-NDHQVR 240 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~-~dg~i~ 240 (430)
.+..+.|+|++++|++++ .+++|.+||+.+++.+..+.... ..|+.... .|. +|+ +..++++. .|++|.
T Consensus 325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~-----~ph~g~g~--~~~-~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-----TPHPGRGA--NFV-HPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SBCCTTCE--EEE-ETTTEEEEEEEBSSSSEEE
T ss_pred CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-----CCCCCCCc--ccC-CCCCccEEEeccCCCceEE
Confidence 788999999999877655 58899999999999887765421 11222222 232 455 66677765 589999
Q ss_pred EEECCCC------CcceEEEeecCCCeEEEEecCCCCEEEEEe-------CCCcEEEEEccCCeEE-eee--------eC
Q 014154 241 LYDTSAQ------RRPVMSFDFRETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIRTGKLL-GCF--------IG 298 (430)
Q Consensus 241 iwd~~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-------~d~~i~iwd~~~~~~~-~~~--------~~ 298 (430)
+||+.+. .+.+..+..|...+..++++|++++|++++ .+++|.+||+.+++.. ..+ ..
T Consensus 397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~ 476 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 476 (543)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence 9999871 235889999988889999999999999987 2679999999998876 333 23
Q ss_pred CCCCCeEEEEecCCCCeEEEEe-----CCCcEEEEECCCCceeeEE
Q 014154 299 KCSGSIRSIARHPTLPIIASCG-----LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 299 ~~~~~v~~i~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~ 339 (430)
+ ...+..+.|+|+|+.|+++. .|+.|.|||.++++++.++
T Consensus 477 ~-~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 477 G-AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp S-CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred C-CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 3 67899999999999888763 4799999999999999884
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=6.6e-24 Score=197.54 Aligned_cols=222 Identities=9% Similarity=0.010 Sum_probs=169.2
Q ss_pred ceEEEEccC------CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCC
Q 014154 124 RTLLTCTTK------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKC 194 (430)
Q Consensus 124 ~~~~~~~~~------g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~ 194 (430)
..++.++.+ +.+.+|++... .++.+. .+...+.+++|+|++++|++++.++ .|++||+.++
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~---------~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY---------NQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC---------SCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC---------CCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 355555543 67888886421 233332 4567899999999999999999875 9999999988
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCc--EEEEECCCCCcceEEEeecCCCeEEEEecCCCC
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF 271 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~ 271 (430)
+... +..+. ..+.+++| +|+++.|+ +++.++. |++||+.++. ...+..|...+.+++|+|+|+
T Consensus 214 ~~~~-l~~~~---------~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~ 279 (415)
T 2hqs_A 214 AVRQ-VASFP---------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQ 279 (415)
T ss_dssp CEEE-EECCS---------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSS
T ss_pred cEEE-eecCC---------CcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCC
Confidence 7653 33332 56889999 89999887 6666655 9999998754 466777888999999999999
Q ss_pred EEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccc
Q 014154 272 NIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHL 345 (430)
Q Consensus 272 ~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 345 (430)
+|++++.+ + .|++||+.+++.. .+..+ ...+.+++|+|+|++|++++.+ ..|++||+.+++... +..+
T Consensus 280 ~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~---l~~~- 353 (415)
T 2hqs_A 280 NLAFTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV---LSST- 353 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCCE-ECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE---CCCS-
T ss_pred EEEEEECCCCCcEEEEEECCCCCEE-EEecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE---ecCC-
Confidence 99988864 4 6888899887643 44444 6688999999999999888764 589999999887743 3334
Q ss_pred cceEEeeeccccccc-cccCCCC---ceEecCCCC
Q 014154 346 NEVVFDSAFADKEVA-NAAADAP---MLEIQNGND 376 (430)
Q Consensus 346 ~~~v~~~~~s~~g~~-~~~~~d~---~i~~~~~~~ 376 (430)
. .+.+++|+|||++ ++++.++ .|.+|+...
T Consensus 354 ~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 354 F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 2 5689999999997 6666666 788888764
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.4e-23 Score=185.92 Aligned_cols=256 Identities=11% Similarity=0.012 Sum_probs=182.8
Q ss_pred eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCC
Q 014154 19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDS 97 (430)
Q Consensus 19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~ 97 (430)
.++.++.|++||+.++ +.. .+..|...+ .++.+ +|+|++|++++ ++.|.+||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~-----~~~-~~~~~~~~v--~~~~~--spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-----KMR-VVWQTPELF--EAPNW--SPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---- 81 (297)
T ss_dssp -CCCCEEEEEEETTTT-----EEE-EEEEESSCC--EEEEE--CTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT----
T ss_pred CCCcceeEEEEeCCCC-----cee-eeccCCcce--EeeEE--CCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc----
Confidence 4567899999999986 433 344466664 45555 78899999886 78999999876 542211100
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS 177 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l 177 (430)
.+...+.+++|+|++++|
T Consensus 82 --------------------------------------------------------------~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 82 --------------------------------------------------------------FATICNNDHGISPDGALY 99 (297)
T ss_dssp --------------------------------------------------------------TCCCBCSCCEECTTSSEE
T ss_pred --------------------------------------------------------------cccccccceEECCCCCEE
Confidence 112345678899999999
Q ss_pred EEEeC--CC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEECCCCCcceE
Q 014154 178 LFGGK--GV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 178 ~~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~ 252 (430)
++++. ++ .|..|++.++. ...+... ..+..++| +|+++.|+ ++..++.++||++........
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~----------~~~~~~~~--spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPSTGGT-PRLMTKN----------LPSYWHGW--SPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp EEEECTTTSSCEEEEEETTCCC-CEECCSS----------SSEEEEEE--CTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EEEEeCCCCcceEEEEECCCCc-eEEeecC----------CCccceEE--CCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 99883 33 45555555443 2222222 34778899 89999777 778899999998643223356
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC--------
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-------- 322 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-------- 322 (430)
.+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..+ ...+..+.|+|++++|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-CcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 6677778899999999999888766 58999999986 45566677776 6789999999999999888766
Q ss_pred ---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC
Q 014154 323 ---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA 366 (430)
Q Consensus 323 ---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d 366 (430)
+.|++||+.+++......+.+| ...+..++|+|+|+. ++++.+
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEEEEec
Confidence 5699999998876554434455 344689999999997 555443
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.7e-22 Score=181.07 Aligned_cols=273 Identities=11% Similarity=0.005 Sum_probs=191.3
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec-CCeEEEecCCCCcc-ccee
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDL-RVAI 91 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~-~~~~ 91 (430)
...++++..++.|.+||+.++ +++..+..+... . .+.+ +|+|++|++++. ++.|.+||+.+++. ...+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~--~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-----EILNQITLGYDF--V-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-----CEEEEEECCCCE--E-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred CEEEEEecCCCeEEEEeCccc-----ceeeeEEccCCc--c-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 345778889999999999987 555555544333 2 5555 788887766554 88999999876653 1110
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
. .+.....+++|+
T Consensus 80 ~-------------------------------------------------------------------~~~~~~~~~~~s 92 (331)
T 3u4y_A 80 Q-------------------------------------------------------------------EGQSSMADVDIT 92 (331)
T ss_dssp E-------------------------------------------------------------------ECSSCCCCEEEC
T ss_pred c-------------------------------------------------------------------cCCCCccceEEC
Confidence 0 011223347899
Q ss_pred CCCCEEEEEeCCC---eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCc-EEEEECCC
Q 014154 172 ISEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQ-VRLYDTSA 246 (430)
Q Consensus 172 ~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~-i~iwd~~~ 246 (430)
|++++|+++..++ .|.+||+.+++.+..+... ..+.+++| +|++++|+ +...++. |.+|++..
T Consensus 93 ~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----------~~~~~~~~--spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 93 PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----------YDAVGIAI--SPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC----------TTEEEEEE--CTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC----------CCccceEE--CCCCCEEEEEecCCCceEEEEEECC
Confidence 9999999555553 8999999998887766543 34688999 89998554 4456688 99999986
Q ss_pred CCcce---EEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeE---EeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 247 QRRPV---MSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 247 ~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
..... ............++|+|+++++++++ .++.|.+||+.+++. +..+.. ...+..++|+|+|++|+.+
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEE
Confidence 44321 11112345689999999999766555 689999999999887 777775 4567899999999977665
Q ss_pred e-CCCcEEEEECCCCce--eeEEEee----ccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154 320 G-LDSYLRFWDIKTRQL--LSAVFLK----QHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 320 ~-~dg~i~iwd~~~~~~--~~~~~~~----~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~ 377 (430)
+ .++.|.+||+.+++. +..+... .........++|+|||++ ++...++.|.+|+....
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 4 578899999999887 3332111 111111245899999987 55667789999998764
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1.4e-22 Score=183.18 Aligned_cols=279 Identities=12% Similarity=0.020 Sum_probs=193.7
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCC--CcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceee
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS--SNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
.+++++.++.|.+||+.++ +++..+..... .+ ..+.+ +|+|+++ +++..++.|.+||+.+++.+..+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~--~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTP--MVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCC--CCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCeEEEEECCCC-----cEEEEEEcCCCCCCc--cceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 4788999999999999987 66665553221 22 33445 6788765 456668899999999888776654
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------------cCCeeEEEEeeecCccccCCCcceEEeeec
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVC 160 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~ 160 (430)
..... .+...+..+.+.+.. ..++++. .++.+.+|++.... .+..+.
T Consensus 74 ~~~~~---~~~~~~~~~~~s~dg--------~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~-- 132 (337)
T 1pby_B 74 LSTPE---ERVKSLFGAALSPDG--------KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFE-- 132 (337)
T ss_dssp CCBTT---EEEECTTCEEECTTS--------SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEE--
T ss_pred cCCcc---cccccccceEECCCC--------CEEEEEecccccccccccccCceEEEEECCCCc--------EEEEEe--
Confidence 31000 000012223433322 2555553 45788888864221 233333
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---
Q 014154 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--- 237 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--- 237 (430)
....+.+++|+|++++|+++ ++.|++||+.+++....+..... ...+.| +|++..++..+..+
T Consensus 133 ~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~----------~~~~~~--s~dg~~l~~~~~~~~~~ 198 (337)
T 1pby_B 133 APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW----------EAETYA--QPDVLAVWNQHESSGVM 198 (337)
T ss_dssp CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT----------TTTTBC--CCBCCCCCCCCTTTTEE
T ss_pred CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc----------CCCcee--CCCccEEeeeccCCCce
Confidence 34567889999999988887 67899999999988776654321 011244 66666554433222
Q ss_pred ---------------------cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154 238 ---------------------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296 (430)
Q Consensus 238 ---------------------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 296 (430)
.|.+||+.+++.....+..+...+.+++|+|++++|+++ ++.|.+||+.+++.+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence 478999998764334455566678899999999999988 799999999999988887
Q ss_pred eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 342 (430)
..+ ..+.+++|+|++++|++++.++.|++||+.+++.+..+...
T Consensus 277 ~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 277 PLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred cCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 753 46789999999999999999999999999999998886543
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.4e-21 Score=176.99 Aligned_cols=297 Identities=9% Similarity=0.039 Sum_probs=188.3
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC-CeEEEecCC--CCccc--cee
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPL--NGDLR--VAI 91 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d-g~i~iwd~~--~~~~~--~~~ 91 (430)
+++++.++.|++|++... +..+.+..+. +...+. .+.+ +|+|++|++++.+ +.|.+|++. +++.. ..+
T Consensus 8 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~~~~~--~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHE--GALTLTQVVD-VPGQVQ--PMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEGGGTEEEEEEECTT--SCEEEEEEEE-CSSCCC--CEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCC--CcEEEeeeEe-cCCCCc--eEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 444578999999999642 1122333333 444433 3445 7788888888776 999999987 44422 222
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEE-EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
... ..+..+.+.+.. ..++ ++..++.+.+|++. ... ....+.. ......+.+++|
T Consensus 81 ~~~---------~~~~~~~~s~dg--------~~l~~~~~~~~~i~~~d~~-~~~----~~~~~~~--~~~~~~~~~~~~ 136 (343)
T 1ri6_A 81 ALP---------GSLTHISTDHQG--------QFVFVGSYNAGNVSVTRLE-DGL----PVGVVDV--VEGLDGCHSANI 136 (343)
T ss_dssp ECS---------SCCSEEEECTTS--------SEEEEEETTTTEEEEEEEE-TTE----EEEEEEE--ECCCTTBCCCEE
T ss_pred ccC---------CCCcEEEEcCCC--------CEEEEEecCCCeEEEEECC-CCc----ccccccc--ccCCCCceEEEE
Confidence 211 133445554432 2454 44558899999984 110 0012222 233456889999
Q ss_pred cCCCCEEEEEe-CCCeEEEEECCC-CeeeE----eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEE
Q 014154 171 DISEKFSLFGG-KGVEVNVWDLDK-CEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD 243 (430)
Q Consensus 171 ~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd 243 (430)
+|++++|++++ .++.|++||+.+ ++... ...... ...+..++| +|++++|++++ .++.|.+|+
T Consensus 137 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 137 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--------GAGPRHMVF--HPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC--------CCCcceEEE--CCCCCEEEEEeCCCCEEEEEE
Confidence 99999888887 889999999987 54322 111111 135778999 89999776555 789999999
Q ss_pred CCC--CCc-ceEEEee---c---CCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc----CCeEEeeeeCCCCCCeEEEEe
Q 014154 244 TSA--QRR-PVMSFDF---R---ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR----TGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 244 ~~~--~~~-~~~~~~~---~---~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~----~~~~~~~~~~~~~~~v~~i~~ 309 (430)
+.. +.. ....+.. . ...+.+++|+|++++|+++. .++.|.+||+. +.+.+..+..+ . .+..++|
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~ 284 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNV 284 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEE
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEE
Confidence 964 221 1222221 1 23566899999998887554 78999999998 23455556554 3 3889999
Q ss_pred cCCCCeEEEEe-CCCcEEEEE--CCCCceeeEEEeeccccceEEeeeccccc
Q 014154 310 HPTLPIIASCG-LDSYLRFWD--IKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 310 ~~~~~~l~s~~-~dg~i~iwd--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
+|++++|++++ .++.|.+|+ ..+++......+.. .....+++|.++.
T Consensus 285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 285 DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNAHE 334 (343)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEEEC
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--CCCCeeEEEEccc
Confidence 99999888887 689999994 44664433222222 1223567777654
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2e-21 Score=176.89 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=192.5
Q ss_pred eeeecCCCCCceeEEeec-------CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE
Q 014154 56 AASIDDSQNDPLLAVARK-------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
.+.+ +|+|++|++++. ++.|.+||..+++.+..+... .....+.+.+... ..+++
T Consensus 45 ~~~~--s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~-------~l~v~ 106 (353)
T 3vgz_A 45 EMAY--SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINNTTQ-------TLWFG 106 (353)
T ss_dssp EEEE--ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEETTTT-------EEEEE
T ss_pred ceEE--CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECCCCC-------EEEEE
Confidence 4445 678888888763 578999999999877776541 1222344443322 24555
Q ss_pred EccCCeeEEEEeeecCccccCCCcceEEeeecCCC--------ceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeE
Q 014154 129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------TIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIW 198 (430)
Q Consensus 129 ~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~--------~i~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~ 198 (430)
...++.+.+|++.... .+..+...... .+.+++|+|+++++++++ .++.|.+||+.+++...
T Consensus 107 ~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~ 178 (353)
T 3vgz_A 107 NTVNSAVTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT 178 (353)
T ss_dssp ETTTTEEEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred ecCCCEEEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence 6667889998865322 33444432222 268899999999888776 47889999999999888
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee----cCCCeEEEEecCCCCEEE
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~ 274 (430)
.+.... ..+.+++| +|++++|++++.++.|.+||+.+++. +..+.. +...+.+++|+|++++++
T Consensus 179 ~~~~~~---------~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 179 AIQNTG---------KMSTGLAL--DSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EECCCC---------TTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EecCCC---------CccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 776332 34677889 89999999999999999999998653 555543 445688899999999887
Q ss_pred EEeCC-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEee
Q 014154 275 IGNGS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS 352 (430)
Q Consensus 275 ~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 352 (430)
+++.+ +.|.+||+.+++.+..+... . ...++|+|++++++.++ .++.|.+||+.+++.+..+.. . ....++
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~--~~~~~~ 319 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAP-E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--P--THPNSL 319 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECS-S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--C--SEEEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcC-C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--C--CCCCeE
Confidence 77654 99999999999998888764 2 25799999999665555 689999999999998887532 2 246899
Q ss_pred eccccccc
Q 014154 353 AFADKEVA 360 (430)
Q Consensus 353 ~~s~~g~~ 360 (430)
+|+|+|++
T Consensus 320 ~~s~dg~~ 327 (353)
T 3vgz_A 320 ALSADGKT 327 (353)
T ss_dssp EECTTSCE
T ss_pred EEcCCCCE
Confidence 99999986
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=5.7e-21 Score=173.07 Aligned_cols=270 Identities=11% Similarity=0.077 Sum_probs=177.2
Q ss_pred eeEE-eecCCeEEEecCCC-Cc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC-CeeEEEEee
Q 014154 67 LLAV-ARKNGLTDILNPLN-GD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-GKASMRSIE 141 (430)
Q Consensus 67 ~l~~-g~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~ 141 (430)
++++ ++.++.|.+|++.. +. .+..+. +...+..+.+.+.. ..++++..+ +.+.+|++.
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~spdg--------~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVD---------VPGQVQPMVVSPDK--------RYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEE---------CSSCCCCEEECTTS--------SEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEe---------cCCCCceEEECCCC--------CEEEEeecCCCeEEEEEec
Confidence 4444 47899999999853 32 122221 11233345554432 356666655 899999986
Q ss_pred ecCccccCCCcceE-EeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECC---CCeeeEeeCCCCCCCCCCcCCcce
Q 014154 142 VTKVSAESSCSTVK-SWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 142 ~~~~~~~~~~~~i~-~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
... +.+. +-.......+..++|+|++++|++++. ++.|.+||+. .......+... ..+
T Consensus 69 ~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------~~~ 131 (343)
T 1ri6_A 69 PDD-------GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL----------DGC 131 (343)
T ss_dssp TTT-------CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC----------TTB
T ss_pred CCC-------CceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC----------CCc
Confidence 211 1221 222223347889999999998877665 8899999994 33444444332 347
Q ss_pred eEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceE----EEee-cCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccC
Q 014154 217 TSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM----SFDF-RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT 289 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~----~~~~-~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~ 289 (430)
.+++| +|++++|++++ .++.|.+||+.+...... .+.. ....+.+++|+|++++|++++ .++.|.+||+..
T Consensus 132 ~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 132 HSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp CCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred eEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 78899 89999888877 899999999987222221 2232 235788999999999776655 789999999953
Q ss_pred --CeE--EeeeeCC---C--CCCeEEEEecCCCCeEEE-EeCCCcEEEEECC--CC--ceeeEEEeeccccceEEeeecc
Q 014154 290 --GKL--LGCFIGK---C--SGSIRSIARHPTLPIIAS-CGLDSYLRFWDIK--TR--QLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 290 --~~~--~~~~~~~---~--~~~v~~i~~~~~~~~l~s-~~~dg~i~iwd~~--~~--~~~~~~~~~~~~~~~v~~~~~s 355 (430)
++. ...+... + ...+..++|+|++++|++ +..++.|++||+. ++ +.+.. +..+ .. +..++|+
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~-~~-~~~~~~s 285 (343)
T 1ri6_A 210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF--QPTE-TQ-PRGFNVD 285 (343)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE--EECS-SS-CCCEEEC
T ss_pred CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee--ecCC-Cc-cceEEEC
Confidence 432 2223211 0 235678999999988774 4578999999998 33 33333 3333 22 6889999
Q ss_pred ccccc-cccC-CCCceEecCCCC
Q 014154 356 DKEVA-NAAA-DAPMLEIQNGND 376 (430)
Q Consensus 356 ~~g~~-~~~~-~d~~i~~~~~~~ 376 (430)
|+|++ ++++ .++.+.+|+.+.
T Consensus 286 ~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 286 HSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp TTSSEEEEECTTTCEEEEEEEET
T ss_pred CCCCEEEEecCCCCeEEEEEEcC
Confidence 99986 4444 689999996653
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.2e-21 Score=176.99 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=191.6
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCC-ceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD-GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 144 (430)
++|++++.++.|.+||+.+++.+..+.... .. .+..+.+.+... ..++++..++.+.+|++....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~-------~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIAD-------AGPTPMVPMVAPGGR-------IAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTT-------CTTCCCCEEECTTSS-------EEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCC-------CCCCccceEEcCCCC-------EEEEEeCCCCeEEEEECCCCC
Confidence 478999999999999999988777665310 00 133344443322 244566677899999864322
Q ss_pred ccccCCCcceEEeeecC----CCceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154 145 VSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~----~~~i~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~ 208 (430)
.+..+.... ...+..++|+|++++|+++. .++.|.+||+.+++.+..+...
T Consensus 68 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----- 134 (337)
T 1pby_B 68 --------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP----- 134 (337)
T ss_dssp --------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----
T ss_pred --------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----
Confidence 333344322 12577899999999999886 5789999999998877666542
Q ss_pred CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC--------
Q 014154 209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-------- 280 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-------- 280 (430)
..+.+++| +|++++|+++ ++.|.+||+.+++ ....+..+.. ...+.|+|++.+|+..+..+
T Consensus 135 -----~~~~~~~~--s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 203 (337)
T 1pby_B 135 -----RQITMLAW--ARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFY 203 (337)
T ss_dssp -----SSCCCEEE--CTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred -----CCcceeEE--CCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeee
Confidence 34677888 8999988887 6899999999865 3555554431 11337899998776554332
Q ss_pred ----------------cEEEEEccCCeEE-eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154 281 ----------------DLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 281 ----------------~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 343 (430)
.|.+||+.+++.. ..+..+ ...+.+++|+|++++|+++ ++.|++||+.+++.+..+...
T Consensus 204 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~- 279 (337)
T 1pby_B 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP- 279 (337)
T ss_dssp EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-
T ss_pred ccccccccccccccccceEEEeCCCCCceEeecCCC-CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-
Confidence 4689999998874 223344 5678899999999999888 789999999999888775322
Q ss_pred cccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 344 HLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 344 ~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
..+.+++|+|+|++ ++++.++.|.+|+....
T Consensus 280 ---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 280 ---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ---SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ---CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 23578999999987 66788999999998764
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.2e-21 Score=195.33 Aligned_cols=311 Identities=11% Similarity=0.038 Sum_probs=200.2
Q ss_pred cceeeecCCCceEEEEccCCCCCcceee-eecCCCCC---------------CcceeeeeecCCCCCceeEEeecCCeEE
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVV-ERWGDPHS---------------SNCVLAASIDDSQNDPLLAVARKNGLTD 78 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~p~g~~l~~g~~dg~i~ 78 (430)
.++++++.+| | +||+.++ +.+ ..+..+.. ...+.++.+ +|| .+++.+ .++.|.
T Consensus 36 ~~~~~~~~~~-i-~~d~~tg-----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~--spd-~~~~~~-~~~~i~ 104 (706)
T 2z3z_A 36 DNYVFIEGDD-L-VFNKANG-----KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD--AGR-GLVVLF-TQGGLV 104 (706)
T ss_dssp TEEEEEETTE-E-EEEC------------CEEEEHHHHHTTC-----------CCCEEEEE--TTT-TEEEEE-ETTEEE
T ss_pred CeEEEEeCCc-E-EEECCCC-----cEeeEEeechhHhhhhccchhccccccccCceeEEE--CCC-CeEEEE-ECCEEE
Confidence 4577777788 8 9999986 221 11111110 022455556 777 455555 459999
Q ss_pred EecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee-----cCccccCCCcc
Q 014154 79 ILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-----TKVSAESSCST 153 (430)
Q Consensus 79 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~~~~~~~~~~ 153 (430)
+||+.+++....... ...+..+.|.+.. ..++. ..++.+.+|++.. ...
T Consensus 105 ~~d~~~~~~~~l~~~---------~~~~~~~~~SpdG--------~~la~-~~~~~i~v~~~~~~~~~~g~~-------- 158 (706)
T 2z3z_A 105 GFDMLARKVTYLFDT---------NEETASLDFSPVG--------DRVAY-VRNHNLYIARGGKLGEGMSRA-------- 158 (706)
T ss_dssp EEETTTTEEEEEECC---------TTCCTTCEECTTS--------SEEEE-EETTEEEEEECBCTTSCCCCC--------
T ss_pred EEECCCCceEEccCC---------cccccCCcCCCCC--------CEEEE-EECCeEEEEecCcccccCCCc--------
Confidence 999988765433221 1122223343322 24444 5788999999865 321
Q ss_pred eEEeeecC-------------CCceEEEEEcCCCCEEEEEe---------------------------------CCCeEE
Q 014154 154 VKSWNVCA-------------SGTIAFSKVDISEKFSLFGG---------------------------------KGVEVN 187 (430)
Q Consensus 154 i~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~---------------------------------~d~~i~ 187 (430)
.++..... ...+.+++|+|++++|++++ .+..|+
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 11111111 11257899999999999987 446799
Q ss_pred EEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----cEEEEECCCCCcceEEEee-cCC--
Q 014154 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFDF-RET-- 259 (430)
Q Consensus 188 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~-~~~-- 259 (430)
+||+.+++........ .+...+.+++| +|+++.|++++.++ .|++||+.++......... +..
T Consensus 239 ~~d~~~~~~~~~~~~~-------~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGE-------PKEKFLTNLSW--SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEETTTTEEEECCCCS-------CTTCEEEEEEE--CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred EEECCCCceEeeccCC-------CCceeEeeEEE--ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 9999988765433211 12256889999 89999999887775 8999999986332332322 222
Q ss_pred -CeEEEEecC--CCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEeC-CC----cEEEEE
Q 014154 260 -PIKAVAEEP--DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGL-DS----YLRFWD 329 (430)
Q Consensus 260 -~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~~-dg----~i~iwd 329 (430)
.+.+++|+| +|++|++++.++.++||++. ++..+..+..+ ...+.. ++|+|+++.|+.++. ++ .|+.||
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 246789999 99999999999999999886 66777777776 667776 799999987766554 44 677788
Q ss_pred CCCCceeeEEEeeccccceEEeeeccccccc-cccCC-C---CceEecCCCCC
Q 014154 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-A---PMLEIQNGNDT 377 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~-d---~~i~~~~~~~~ 377 (430)
+.+++. .. +. + ...+.+++|+|||++ ++... + +.+.+|+....
T Consensus 389 ~~~~~~-~~--l~-~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 389 IKGGKT-KD--LT-P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp TTCCCC-EE--SC-C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred cCCCCc-ee--cc-C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 877663 33 22 3 334689999999987 44322 2 56999987653
No 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=3.1e-21 Score=200.20 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=156.0
Q ss_pred ceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCc-ceeEEEEeecCCCCEEEEEeCCCcEE-
Q 014154 164 TIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTNDHQVR- 240 (430)
Q Consensus 164 ~i~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~- 240 (430)
.+..++|+ |++++|++++ ++.|++|++..+.... +..+. . .+..++| + ++..|++++.+..+.
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~---------~~~~~~~~~--s-dg~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPL---------RIRYVRRGG--D-TKVAFIHGTREGDFLG 362 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCS---------CEEEEEECS--S-SEEEEEEEETTEEEEE
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCC---------cceEEeeeE--c-CCCeEEEEECCCceEE
Confidence 57889999 9999998887 7799999998766443 33322 4 6888999 8 999999999888898
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
+||+..+. ...+..|...+.+++|+|||++|++++.++.|++||+.+++....+.+| ...+..++|+|||++|++++
T Consensus 363 ~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 363 IYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp EEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEE
T ss_pred EEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECCCCCeEEEEe
Confidence 99998754 3445577789999999999999999999999999999999988777777 78899999999999998887
Q ss_pred CCC----------cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 321 LDS----------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 321 ~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
.++ .|++||+.+++ +.. +..+ ...+..++|+|||+. ++++.++...+|+..
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~--l~~~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRK-IFA--ATTE-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTE-EEE--CSCS-SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cCccccccCCCCCeEEEEECCCCc-EEE--eeCC-CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 654 89999999887 333 4455 334578999999998 777777877777754
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.7e-21 Score=194.78 Aligned_cols=307 Identities=9% Similarity=0.015 Sum_probs=192.3
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCCCCceeEEeecC---------CeEEEecCC
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKN---------GLTDILNPL 83 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~d---------g~i~iwd~~ 83 (430)
..+++..+.||+|++||+.++ +....+..|... ..+..+.+ +|||++|++++.+ +.|.+||+.
T Consensus 27 dg~~~~~~~dg~i~~~d~~~g-----~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 27 DTEFIYREQKGTVRLWNVETN-----TSTVLIEGKKIESLRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp SSCBCCCCSSSCEEEBCGGGC-----CCEEEECTTTTTTTTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CCcEEEEeCCCCEEEEECCCC-----cEEEEeccccccccccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 345666688999999999987 455555555431 12445556 8899999998764 788899998
Q ss_pred CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC-
Q 014154 84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS- 162 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~- 162 (430)
+++. ..+... ..+...+..+.|.+. . ..++.++. +.+.+|++.... ..++......
T Consensus 100 ~~~~-~~l~~~-----~~~~~~~~~~~~SPd-G-------~~la~~~~-~~i~~~~~~~g~--------~~~~~~~~~~~ 156 (723)
T 1xfd_A 100 HGDP-QSLDPP-----EVSNAKLQYAGWGPK-G-------QQLIFIFE-NNIYYCAHVGKQ--------AIRVVSTGKEG 156 (723)
T ss_dssp SCCC-EECCCT-----TCCSCCCSBCCBCSS-T-------TCEEEEET-TEEEEESSSSSC--------CEEEECCCBTT
T ss_pred CCce-EeccCC-----ccccccccccEECCC-C-------CEEEEEEC-CeEEEEECCCCc--------eEEEecCCCCC
Confidence 8875 222211 011111222333222 1 24554443 678888765332 2222221111
Q ss_pred ----------------CceEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECC
Q 014154 163 ----------------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLD 192 (430)
Q Consensus 163 ----------------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~d~~ 192 (430)
..+.+++|+|++++|++++.++ .|++||+.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 1237899999999999887553 79999998
Q ss_pred CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC----CCcEEEEECCCCCcceEEEee-cCCCe----EE
Q 014154 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDF-RETPI----KA 263 (430)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~-~~~~i----~~ 263 (430)
+++....+..+.. ...+...+..++| +||+++|++... +..|++||+.+++. ...+.. +...+ ..
T Consensus 237 ~~~~~~~l~~~~~---~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 237 GPTHDLEMMPPDD---PRMREYYITMVKW--ATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp SSCCCEECCCCCC---GGGSSEEEEEEEE--SSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCC
T ss_pred CCceeEEeeCCcc---CCCccceeEEEEE--eCCCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEeccCCEEeccCCC
Confidence 8775455543210 0011256889999 899998877653 35799999998663 444433 33433 37
Q ss_pred EEecCCCCEEEE--EeCCC------cEEEEE-ccCCe--EEeeeeCCCCCCeEE-EEecCCCCeEEEEeCC---CcEEEE
Q 014154 264 VAEEPDSFNIYI--GNGSG------DLASVD-IRTGK--LLGCFIGKCSGSIRS-IARHPTLPIIASCGLD---SYLRFW 328 (430)
Q Consensus 264 ~~~sp~~~~l~~--~~~d~------~i~iwd-~~~~~--~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~~d---g~i~iw 328 (430)
++|+|||+.|+. +..++ .|.+|| ...++ +...+..+ ...+.. ++|+|+|+.|+..+.+ +.++||
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 899999997775 44566 577778 34444 14455543 344554 6999999998766655 789999
Q ss_pred ECCCCc--eeeEEEeec---cccceEEeeeccccccc
Q 014154 329 DIKTRQ--LLSAVFLKQ---HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 329 d~~~~~--~~~~~~~~~---~~~~~v~~~~~s~~g~~ 360 (430)
++.... .... +.. + ...+..++|+|||++
T Consensus 390 ~~~~~~~~~~~~--l~~~~~~-~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 390 SANTVGNFNRQC--LSCDLVE-NCTYFSASFSHSMDF 423 (723)
T ss_dssp EECSSTTCCCBC--SSTTSSS-SCCCCEEEECTTSSE
T ss_pred EEeCCCCCCcce--ecccccC-CCCeEEEEECCCCCE
Confidence 986432 2222 322 2 344678999999987
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=3.3e-21 Score=193.25 Aligned_cols=310 Identities=8% Similarity=0.005 Sum_probs=204.6
Q ss_pred cceeeecC-CC-----ceEEEEccCCCCCcceeeeecCCCCCC----------------------cceeeeeecCCCCCc
Q 014154 15 LRALTFDS-LG-----LIKVIEARGEHGGVPKVVERWGDPHSS----------------------NCVLAASIDDSQNDP 66 (430)
Q Consensus 15 ~~l~t~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~p~g~ 66 (430)
.+|++++. || .|++||+.++ +....+..+... ..+..+.| +|||+
T Consensus 49 ~~la~~~~~d~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~ 121 (741)
T 2ecf_A 49 SRVTFLRGKDSDRNQLDLWSYDIGSG-----QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQ 121 (741)
T ss_dssp SEEEEEECCSSCTTEEEEEEEETTTC-----CEEEEECGGGTC--------------------CCEESCCCEE--CTTSS
T ss_pred CEEEEEeccCCCCcccEEEEEECCCC-----ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE--CCCCC
Confidence 35777777 88 8999999986 343333322211 12345556 89999
Q ss_pred eeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154 67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 144 (430)
+|++++. +.|.+||+.++. ....+.. +...+..+.|.+.. ..++.++ ++.+.+|++....
T Consensus 122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l~~--------~~~~~~~~~~SPDG--------~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 122 RLLFPLG-GELYLYDLKQEGKAAVRQLTH--------GEGFATDAKLSPKG--------GFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EEEEEET-TEEEEEESSSCSTTSCCBCCC--------SSSCEEEEEECTTS--------SEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeC-CcEEEEECCCCCcceEEEccc--------CCcccccccCCCCC--------CEEEEEe-CCcEEEEecCCCC
Confidence 9999876 999999998772 2223222 22356666655432 2455444 5688888864321
Q ss_pred ccccCCCcceEEeeecCCC----------------ceEEEEEcCCCCEEEEEeCCC------------------------
Q 014154 145 VSAESSCSTVKSWNVCASG----------------TIAFSKVDISEKFSLFGGKGV------------------------ 184 (430)
Q Consensus 145 ~~~~~~~~~i~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~d~------------------------ 184 (430)
.......+.. .+..++|+|++++|++++.|+
T Consensus 184 ---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 184 ---------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp ---------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred ---------EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 1111111111 247799999999999988765
Q ss_pred ---------eEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----CCcEEEEECCCCCc
Q 014154 185 ---------EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRR 249 (430)
Q Consensus 185 ---------~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~ 249 (430)
.|++||+.+ ++........ .+...+..++| |+++.|++++. +..|++||+.+++.
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~---pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~ 324 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDLGK-------EQDIYLARVNW---RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECCCS-------CSSEEEEEEEE---EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecCCC-------CcceEEEEEEe---CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence 788999987 7654332220 12256788888 47888887653 56799999998663
Q ss_pred ceEEEeecCC----CeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEEE-EecCCCCeEEE-EeCC
Q 014154 250 PVMSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSI-ARHPTLPIIAS-CGLD 322 (430)
Q Consensus 250 ~~~~~~~~~~----~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~s-~~~d 322 (430)
...+..+.. .+.+++|+|||+++++++.++.++||.+. .++ ...+..+ ...+..+ .|+|+++.|+. ++.+
T Consensus 325 -~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 325 -RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp -EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSS
T ss_pred -EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCC
Confidence 455555443 45689999999999999999988887765 445 6677776 6778887 59999987754 4455
Q ss_pred C--cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCC----CceEecCCC
Q 014154 323 S--YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA----PMLEIQNGN 375 (430)
Q Consensus 323 g--~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d----~~i~~~~~~ 375 (430)
+ .++||++.. +..... +.. ...+..++|+|||+. +....+ ..+.+|+..
T Consensus 402 ~~~~~~l~~~~~~g~~~~~--l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 402 SARESQIYAVPLQGGQPQR--LSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CTTCBEEEEEETTCCCCEE--CCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCceEEEEEEEcCCCCeee--ccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 5 899999864 554554 333 233579999999997 333222 467777654
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=4.9e-21 Score=191.99 Aligned_cols=294 Identities=13% Similarity=0.056 Sum_probs=195.4
Q ss_pred eeeeeecCCCCCceeEEeec-CC-----eEEEecCCCCcccceeeccCCC----CCCCCC------------CceEEEEE
Q 014154 54 VLAASIDDSQNDPLLAVARK-NG-----LTDILNPLNGDLRVAISNAGDS----GAQPED------------DGIVGLHL 111 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~----~~~~~~------------~~i~~~~~ 111 (430)
+..+.| +|||++|++++. |+ .|.+||+.+++....+...... ..+... ..+..+.|
T Consensus 39 ~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 39 LMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 455666 889999999988 88 8999999988765555432110 000000 11233333
Q ss_pred eecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 014154 112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL 191 (430)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~ 191 (430)
.+.. ..++.++. +.+.+|++..... ..++.. ..+...+..++|+|+|++|++++. +.|++||+
T Consensus 117 SpDg--------~~l~~~~~-~~i~~~d~~~~~~------~~~~~l-~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~ 179 (741)
T 2ecf_A 117 SPDA--------QRLLFPLG-GELYLYDLKQEGK------AAVRQL-THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDL 179 (741)
T ss_dssp CTTS--------SEEEEEET-TEEEEEESSSCST------TSCCBC-CCSSSCEEEEEECTTSSEEEEEET-TEEEEEET
T ss_pred CCCC--------CEEEEEeC-CcEEEEECCCCCc------ceEEEc-ccCCcccccccCCCCCCEEEEEeC-CcEEEEec
Confidence 3322 35555554 8899998754310 011111 134567899999999999998875 59999999
Q ss_pred CCCeeeEeeCCCCCCCCCCcCC--------cceeEEEEeecCCCCEEEEEeCCC--------------------------
Q 014154 192 DKCEKIWTAKPPPKNSLGIFTP--------TWFTSAAFLSIDDHRKFVAGTNDH-------------------------- 237 (430)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~dg-------------------------- 237 (430)
.+++.......+.... ..... ..+..++| +|||++|++++.|+
T Consensus 180 ~~g~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTI-GNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp TTTEEEECCCCCCSSE-EESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred CCCCEEEeccCCccce-eccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 9877654433321100 00000 11477899 89999999988765
Q ss_pred -------cEEEEECCC-CCcceEEEe--ecCCCeEEEEecCCCCEEEEEeC-----CCcEEEEEccCCeEEeeeeCCCCC
Q 014154 238 -------QVRLYDTSA-QRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 238 -------~i~iwd~~~-~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~ 302 (430)
.|.+||+.+ ++. ..... .|...+..++| |||++|++++. +..|++||+.+++....+..+...
T Consensus 257 g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT 334 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence 788999987 653 33222 36678999999 99999997764 567999999999887777655222
Q ss_pred ---CeEEEEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEee-eccccccc--cccCCCC--ceEecC
Q 014154 303 ---SIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDS-AFADKEVA--NAAADAP--MLEIQN 373 (430)
Q Consensus 303 ---~v~~i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~--~~~~~d~--~i~~~~ 373 (430)
.+..++|+|+|+++++++.||.++||.+. ++. ... +..+ ...+..+ .|+|+|+. ++++.++ .+++|+
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~--l~~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA--LTHG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE--SCCS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee--eeec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 45689999999999999999988888765 344 444 4445 3335666 69999986 4455555 889998
Q ss_pred CC
Q 014154 374 GN 375 (430)
Q Consensus 374 ~~ 375 (430)
.+
T Consensus 411 ~~ 412 (741)
T 2ecf_A 411 VP 412 (741)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=3.3e-22 Score=186.74 Aligned_cols=210 Identities=10% Similarity=0.029 Sum_probs=155.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC------CCCCCCcCCcceeEEEEeecCCCCEEE----E
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHRKFV----A 232 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~----s 232 (430)
..+..+++++++.++++++.++ +++|+............+. .....+.+...|.+++| +|++++|+ +
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCCEEEEEEec
Confidence 4578899999999999999887 8998764211100000000 00001122356999999 89999999 7
Q ss_pred EeCCCcEEEEECCCC-----C--cc---eEEEeecCCCeEEEEecCC-CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCC
Q 014154 233 GTNDHQVRLYDTSAQ-----R--RP---VMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~-----~--~~---~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 301 (430)
++.|+.|++||+.+. . .+ +..+.+|...|.+++|+|+ +.+|++++.||.|++||++++..+....+| .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-T 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-G
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-C
Confidence 888999999998753 1 11 3455668899999999998 789999999999999999999877777777 8
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc----cceEEeeecccccccc--ccCCCC------ce
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL----NEVVFDSAFADKEVAN--AAADAP------ML 369 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~s~~g~~~--~~~~d~------~i 369 (430)
..|++++|+|+|.+|++|+.||.|++||++ ++....+...... ...+.+++|++++.++ +...+| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 899999999999999999999999999998 6655553221111 2267999999998883 233343 37
Q ss_pred EecCCCCC
Q 014154 370 EIQNGNDT 377 (430)
Q Consensus 370 ~~~~~~~~ 377 (430)
++|+....
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 88987653
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=1.6e-20 Score=194.80 Aligned_cols=298 Identities=16% Similarity=0.110 Sum_probs=208.7
Q ss_pred cCCCceEEEEccCCCCCcceeeeecCCC-----------CCCcceeeeeecCC-CCCceeEEeecCCeEEEecCCCCccc
Q 014154 21 DSLGLIKVIEARGEHGGVPKVVERWGDP-----------HSSNCVLAASIDDS-QNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 21 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
..++.|.+|++... .+..+..+ ... +..+.| + |+|++|++++ ++.|.+|++..+...
T Consensus 262 ~~~~~i~~~d~~~~------~l~~l~~~~~~~~~~~~~~~~~--v~~~~~--S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 262 SKGGSIYIFNPDTE------KIEKIEIGDLESPEDRIISIPS--KFAEDF--SPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp EETTEEEEECTTTC------CEEECCCCCCCBCCSEEEECGG--GGEEEE--EECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred EeCCEEEEecCCce------EeeeeccCcccccccccccccc--cceeee--cCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 36889999999543 22244432 223 344555 7 8899999887 789999999776533
Q ss_pred ceeeccCCCCCCCCCC-ceEEEEEeecCcccccccCceEEEEccCCeeE-EEEeeecCccccCCCcceEEeeecCCCceE
Q 014154 89 VAISNAGDSGAQPEDD-GIVGLHLFKRQREESSSRSRTLLTCTTKGKAS-MRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
. +.. +.. .+..+.|. .. ..++.++.++.+. +|++.. +.++... .+...+.
T Consensus 331 ~-~~~--------~~~~~~~~~~~s--dg-------~~l~~~s~~~~l~~~~d~~~---------~~~~~l~-~~~~~~~ 382 (1045)
T 1k32_A 331 K-VPE--------PLRIRYVRRGGD--TK-------VAFIHGTREGDFLGIYDYRT---------GKAEKFE-ENLGNVF 382 (1045)
T ss_dssp E-CSC--------CSCEEEEEECSS--SE-------EEEEEEETTEEEEEEEETTT---------CCEEECC-CCCCSEE
T ss_pred E-ccC--------CCcceEEeeeEc--CC-------CeEEEEECCCceEEEEECCC---------CCceEec-CCcccee
Confidence 2 211 122 34444443 32 3566666655555 665432 1233333 4567899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---------
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--------- 237 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--------- 237 (430)
.++|+|++++|++++.++.|++||+.+++.......+. ..+.+++| +|++++|++++.++
T Consensus 383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~---------~~v~~~~~--SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE---------AMITDFTI--SDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS---------SCCCCEEE--CTTSCEEEEEEEECSSTTCSCCE
T ss_pred eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC---------CCccceEE--CCCCCeEEEEecCccccccCCCC
Confidence 99999999999999999999999999988766654443 56788999 89999998887654
Q ss_pred -cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE------------------------
Q 014154 238 -QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------------------------ 292 (430)
Q Consensus 238 -~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~------------------------ 292 (430)
.|++||+.+++ ...+..|...+.+++|+|+|++|++++.++...+|+......
T Consensus 452 ~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1045)
T 1k32_A 452 QAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 529 (1045)
T ss_dssp EEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred CeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccC
Confidence 89999999754 567777888899999999999999999887777776433211
Q ss_pred -------------------EeeeeCCCCCCeEEEEecCCCCeEEE-------------EeCCCcEEEEECCCCceeeEEE
Q 014154 293 -------------------LGCFIGKCSGSIRSIARHPTLPIIAS-------------CGLDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 293 -------------------~~~~~~~~~~~v~~i~~~~~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~ 340 (430)
+..+..+ ...+..+.++|++.++++ ......|++||+.+++....
T Consensus 530 ~~~~~~~~~~~d~~g~~~~~~~l~~~-~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l-- 606 (1045)
T 1k32_A 530 PRSMTSEAGEYDLNDMYKRSSPINVD-PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-- 606 (1045)
T ss_dssp CGGGSCCCCCCCCTTGGGGCEECSCC-CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE--
T ss_pred cCccccccccccccCHhHceEEcCCC-CCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe--
Confidence 1122233 567889999999987775 12345788999988875432
Q ss_pred eeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154 341 LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 341 ~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
. ..+..++|||||+.+..+.++.+++|+.....
T Consensus 607 -~----~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 607 -K----NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp -E----EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred -e----cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 1 33678899999998444445589999987644
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=2.9e-21 Score=193.16 Aligned_cols=292 Identities=8% Similarity=-0.049 Sum_probs=190.2
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC-
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK- 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (430)
...+.| +|||+++++ +.||.|++||+.+++....+..+... ...+..+.+.+.. ..++.++.+
T Consensus 19 ~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~-----~~~v~~~~~SpDg--------~~l~~~~~~~ 82 (723)
T 1xfd_A 19 DPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE-----SLRAIRYEISPDR--------EYALFSYNVE 82 (723)
T ss_dssp CCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT-----TTTCSEEEECTTS--------SEEEEEESCC
T ss_pred ccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc-----ccccceEEECCCC--------CEEEEEecCc
Confidence 344555 889998776 68999999999998876665442110 0124455554433 356666543
Q ss_pred --------CeeEEEEeeecCccccCCCcceEEeee--cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154 133 --------GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 133 --------g~~~v~~~~~~~~~~~~~~~~i~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
+.+.+|++.... .+.... .+...+..++|+|+|+.|++++. +.|++||+.+++.......
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGD---------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCC---------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred cceeecceeeEEEEECCCCc---------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 567788765332 111111 12234788999999999999886 6999999998776654443
Q ss_pred CCCCCCCCcCC---------cceeEEEEeecCCCCEEEEEeCCC----------------------------------cE
Q 014154 203 PPKNSLGIFTP---------TWFTSAAFLSIDDHRKFVAGTNDH----------------------------------QV 239 (430)
Q Consensus 203 ~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 239 (430)
+........++ ..+.+++| +|||+.|++++.++ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 22110000000 12378899 99999999987553 79
Q ss_pred EEEECCCCCcceEEEeec------CCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCeEEeeeeCCCCCCeE----
Q 014154 240 RLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIR---- 305 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~---- 305 (430)
++||+.++.. ...+..+ ...+.+++|+|||++|++... +..|++||+.++++...+..++...+.
T Consensus 231 ~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 231 HVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 9999987653 3455543 567899999999998877653 357999999999887666543244443
Q ss_pred EEEecCCCCeEEE--EeCCC------cEEEEE-CCCCce--eeEEEeeccccceEEeeeccccccc-ccc-CCC--CceE
Q 014154 306 SIARHPTLPIIAS--CGLDS------YLRFWD-IKTRQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADA--PMLE 370 (430)
Q Consensus 306 ~i~~~~~~~~l~s--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d--~~i~ 370 (430)
.++|+|||+.|+. +..++ .|++|| ..++.. ... +..+.......++|+|||+. ++. ..+ +.++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS--ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB--SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE--eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 7899999997775 45666 577788 344441 333 22221333344799999997 444 444 7899
Q ss_pred ecCCCC
Q 014154 371 IQNGND 376 (430)
Q Consensus 371 ~~~~~~ 376 (430)
+|..+.
T Consensus 388 l~~~~~ 393 (723)
T 1xfd_A 388 LYSANT 393 (723)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 998753
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.7e-18 Score=158.16 Aligned_cols=301 Identities=10% Similarity=0.037 Sum_probs=182.7
Q ss_pred cceeee----cCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC----CeEEEecCCC--
Q 014154 15 LRALTF----DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN----GLTDILNPLN-- 84 (430)
Q Consensus 15 ~~l~t~----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d----g~i~iwd~~~-- 84 (430)
..++.| +.++.|.+|.+... .+....+..+ +...... +.+ +|+|++|++++.+ +.|.+|++..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~-~g~~~~~~~~--~~~~p~~--l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEE-TGESLPLSDA--EVANPSY--LIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEK 86 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETT-TCCEEEEEEE--ECSCCCS--EEE--CTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred eEEEEEeccCCCCCCEEEEEEeCC-CCCEEEeecc--cCCCCce--EEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence 345555 45678999988653 2222333333 3344333 444 7788999998875 7999998865
Q ss_pred CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec----
Q 014154 85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---- 160 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~---- 160 (430)
++. ..+.... ........+.+ + .. ..+++...++.+.+|++....... .........
T Consensus 87 g~~-~~~~~~~-----~~~~~p~~~~~-d-g~-------~l~~~~~~~~~v~~~~~~~~g~~~----~~~~~~~~~g~~~ 147 (361)
T 3scy_A 87 GTL-HLLNTQK-----TMGADPCYLTT-N-GK-------NIVTANYSGGSITVFPIGQDGALL----PASDVIEFKGSGP 147 (361)
T ss_dssp TEE-EEEEEEE-----CSSSCEEEEEE-C-SS-------EEEEEETTTTEEEEEEBCTTSCBC----SCSEEEECCCCCS
T ss_pred CcE-EEeeEec-----cCCCCcEEEEE-C-CC-------EEEEEECCCCEEEEEEeCCCCcCc----ccceeEEccCCCC
Confidence 332 2221110 01123444444 2 11 134444467899999986322100 011111111
Q ss_pred -----CCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee------e------EeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 161 -----ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK------I------WTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 161 -----~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~------~------~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
+...+.+++|+|++++|++++ .++.|.+|++..... + ....... ...+..++|
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~- 218 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP--------GSGPRHLIF- 218 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT--------TCCEEEEEE-
T ss_pred CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC--------CCCCeEEEE-
Confidence 123468899999999776665 478999999875331 1 1111111 144678999
Q ss_pred ecCCCCEEEEEe-CCCcEEEEECCCCCc-ceEEEee---cCCCeEEEEecCCCCEEEEEeCC--CcEEEEEcc--CCe--
Q 014154 223 SIDDHRKFVAGT-NDHQVRLYDTSAQRR-PVMSFDF---RETPIKAVAEEPDSFNIYIGNGS--GDLASVDIR--TGK-- 291 (430)
Q Consensus 223 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d--~~i~iwd~~--~~~-- 291 (430)
+|+++++++++ .++.|.+||+.++.. .+..+.. +......++|+|+|++|+++..+ +.|.+|++. +++
T Consensus 219 -spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~ 297 (361)
T 3scy_A 219 -NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT 297 (361)
T ss_dssp -CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred -cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence 89999887777 689999999986432 1222222 23456799999999999777665 899999995 454
Q ss_pred EEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEE--ECCCCceeeEEEeeccccceEEeeecc
Q 014154 292 LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFW--DIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~s 355 (430)
.+..+.. ...+..++|+|+|++|++++ .++.|.+| |..++++.... ...+.. .+.+++|.
T Consensus 298 ~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~-~~~~~~-~p~~v~~~ 360 (361)
T 3scy_A 298 KVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK-KDIKVD-KPVCLKFV 360 (361)
T ss_dssp EEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS-CCEECS-SEEEEEEE
T ss_pred EeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc-eeeeCC-CCeEEEEc
Confidence 3444443 34678999999999888887 67899996 55577765431 112222 35777775
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=1.2e-19 Score=164.67 Aligned_cols=239 Identities=12% Similarity=0.040 Sum_probs=170.5
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
.+++.++++++.++.|.+||+.+++.+..+.... ......+.+.+... ..+++...++.+.+|++.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~-------~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-------KFGPGTAMMAPDNR-------TAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-------CCSSCEEEECTTSS-------EEEEEETTTTEEEEEETT
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-------CCCCceeEECCCCC-------EEEEEeCCCCcEEEEeCC
Confidence 5567789999999999999999988777665421 01233445543322 244566678899999864
Q ss_pred ecCccccCCCcceEEeeecC-----CCceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCeee---EeeC
Q 014154 142 VTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFSLFGGKG------------VEVNVWDLDKCEKI---WTAK 201 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~---~~~~ 201 (430)
... .+......+ ...+..++|+|++++|++++.+ +.|.+||+.+++.. ..+.
T Consensus 74 t~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 145 (349)
T 1jmx_B 74 TCK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP 145 (349)
T ss_dssp TTE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred CCc--------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence 321 233333322 2337789999999999998865 89999999874432 2222
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC-----------------------
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE----------------------- 258 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------- 258 (430)
. +..+.+++| +|+++ +++++ +.|.+||+.+++. +..+..+.
T Consensus 146 ~----------~~~~~~~~~--s~dg~-l~~~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (349)
T 1jmx_B 146 M----------PRQVYLMRA--ADDGS-LYVAG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 209 (349)
T ss_dssp C----------CSSCCCEEE--CTTSC-EEEES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred C----------CCcccceeE--CCCCc-EEEcc--CcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCccee
Confidence 2 134778889 89998 55543 3499999987553 33333221
Q ss_pred ---------------------------------------------CCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeE
Q 014154 259 ---------------------------------------------TPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 259 ---------------------------------------------~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
..+.+++|+| ++++++++ ++.|.+||+.+++.
T Consensus 210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 1345677889 99999988 88999999999998
Q ss_pred EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 342 (430)
+..+... ..+.+++|+|++++|++++.++.|++||+.+++.+..+.+.
T Consensus 288 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 288 IKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 8887753 45789999999998888888999999999999988886543
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.2e-18 Score=158.23 Aligned_cols=278 Identities=10% Similarity=0.037 Sum_probs=172.6
Q ss_pred cCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec---CCeEEEecCCCCcc--cceeeccC
Q 014154 21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLNGDL--RVAISNAG 95 (430)
Q Consensus 21 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~~~~--~~~~~~~~ 95 (430)
+.++.|.+|.+... .+....+.... +.... ..+.+ +|+|+ |++++. ++.|.+|++.++.. +..+..+
T Consensus 13 ~~~~~i~v~~~d~~-tg~~~~~~~~~-~~~~p--~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~- 84 (347)
T 3hfq_A 13 KTSQGIYQGTLDTT-AKTLTNDGLLA-ATQNP--TYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAP- 84 (347)
T ss_dssp SSCCEEEEEEEETT-TTEEEEEEEEE-ECSCC--CCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEE-
T ss_pred CCCCCEEEEEEcCC-CCeEEEeeeee-ccCCc--ceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecC-
Confidence 44667888887652 12222222222 22332 33444 77888 555544 68999999976652 2221111
Q ss_pred CCCCCCCCCceEEEEEeecCcccccccCceEEEEc-cCCeeEEEEeeecCccccCCCcceEEeeec--------CCCceE
Q 014154 96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIA 166 (430)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--------~~~~i~ 166 (430)
...+..+.+.+.. ..++++. .++.+.+|++..... ...+...... ....+.
T Consensus 85 -------~~~p~~~a~spdg--------~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 85 -------GTPPAYVAVDEAR--------QLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp -------SCCCSEEEEETTT--------TEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEE
T ss_pred -------CCCCEEEEECCCC--------CEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCce
Confidence 1233345554433 3455555 678999999853211 0112222111 123488
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCCCcEEEE
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLY 242 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw 242 (430)
+++|+|+++++++...++.|.+|++. +++... .+.... ...+..++| +|++++|++ +..++.|.+|
T Consensus 145 ~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--------g~~p~~~~~--spdg~~l~v~~~~~~~v~v~ 214 (347)
T 3hfq_A 145 YTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA--------GFGPRHLVF--SPDGQYAFLAGELSSQIASL 214 (347)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEE
T ss_pred EEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC--------CCCCceEEE--CCCCCEEEEEeCCCCEEEEE
Confidence 89999999966666678899999998 444322 111111 134678899 899996655 5568899999
Q ss_pred ECCC--CCc-ceEEEeecC------CCeEEEEecCCCCEEE-EEeCCCcEEEEEcc---CCeEEeeeeCCCCCCeEEEEe
Q 014154 243 DTSA--QRR-PVMSFDFRE------TPIKAVAEEPDSFNIY-IGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 243 d~~~--~~~-~~~~~~~~~------~~i~~~~~sp~~~~l~-~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~i~~ 309 (430)
++.. +.. .+..+.... ..+..++|+|+|++|+ +...++.|.+||+. ..+.+..+..+ ...+..++|
T Consensus 215 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~ 293 (347)
T 3hfq_A 215 KYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDL 293 (347)
T ss_dssp EEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEE
T ss_pred EecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEE
Confidence 9874 221 122232222 3488899999999875 45568999999997 23556666665 567899999
Q ss_pred cCCCCeEEEEeCC-CcEEEE--ECCCCceee
Q 014154 310 HPTLPIIASCGLD-SYLRFW--DIKTRQLLS 337 (430)
Q Consensus 310 ~~~~~~l~s~~~d-g~i~iw--d~~~~~~~~ 337 (430)
+|+|++|++++.+ +.|.+| |..++++..
T Consensus 294 spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 9999988888754 899999 556677654
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=3.9e-20 Score=180.17 Aligned_cols=268 Identities=11% Similarity=-0.018 Sum_probs=180.1
Q ss_pred eeeeeecCCCCCceeEEeec-CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-
Q 014154 54 VLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT- 131 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (430)
+.++.+ +|||++||+++. ||+++||++..++.. .+..+ +...+..+.|. .+ ..++++..
T Consensus 24 ~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~-------~~~~~~~~~~s-pd--------~~l~~~~~~ 84 (582)
T 3o4h_A 24 KYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNRE-------PINSVLDPHYG-VG--------RVILVRDVS 84 (582)
T ss_dssp EEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEE-ECCSS-------CCSEECEECTT-CS--------EEEEEEECS
T ss_pred hheeec--CCCCCeEEEEEccCCceeEEEEcCCCcE-eeecc-------cccccccccCC-CC--------eEEEEeccC
Confidence 344444 678889999876 999999998655433 22221 01123323322 11 14444443
Q ss_pred --CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154 132 --KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 132 --~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 208 (430)
+....+|.+.... ++.... +.....+...+|+|+++. +++.+.++.+.+||+.+++.......+
T Consensus 85 ~g~~~~~l~~~~~~~------~g~~~~--l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~----- 151 (582)
T 3o4h_A 85 KGAEQHALFKVNTSR------PGEEQR--LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP----- 151 (582)
T ss_dssp TTSCCEEEEEEETTS------TTCCEE--CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-----
T ss_pred CCCcceEEEEEeccC------CCcccc--ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-----
Confidence 3345677665310 111111 122233446677887753 333344445669999888765443221
Q ss_pred CCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC--cE
Q 014154 209 GIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DL 282 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i 282 (430)
. .+++| +|||++|++++.+ +.|++||+.+++ ...+..|...+..++|||||++|+++..++ .|
T Consensus 152 -----~--~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i 220 (582)
T 3o4h_A 152 -----G--FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLETAREARL 220 (582)
T ss_dssp -----S--CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEE
T ss_pred -----C--ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEccCCCeeEE
Confidence 2 66788 8999999988877 789999998765 457778888899999999999999888888 89
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEE--------ecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIA--------RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~--------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 354 (430)
++||+.+++.. .+.++ ...+..+. |+|||.++++++.|+.+++|++ ++.+.. . ...+.+++|
T Consensus 221 ~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~-~~~v~~~~~ 290 (582)
T 3o4h_A 221 VTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----P-QGNHGRVVL 290 (582)
T ss_dssp EEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----C-SSEEEEEEE
T ss_pred EEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----C-CCceEEEEe
Confidence 99999999887 66666 66677777 9999988999999999999999 665542 2 244689999
Q ss_pred cccccc-cccCCC---CceEecCCC
Q 014154 355 ADKEVA-NAAADA---PMLEIQNGN 375 (430)
Q Consensus 355 s~~g~~-~~~~~d---~~i~~~~~~ 375 (430)
+ +|++ ++++.+ ..+.+|+..
T Consensus 291 s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 291 W-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp E-TTEEEEEEEETTEEEEEEEETTC
T ss_pred c-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 9 8887 555555 346666654
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=5.3e-19 Score=176.26 Aligned_cols=281 Identities=12% Similarity=0.046 Sum_probs=175.1
Q ss_pred eeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-----Ccccceee
Q 014154 18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAIS 92 (430)
Q Consensus 18 ~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~ 92 (430)
+....++.|++||+.++ +... +..+...+ ..+.| +|||++|+++ .++.|.+||+.+ ++......
T Consensus 95 ~~~~~~~~i~~~d~~~~-----~~~~-l~~~~~~~--~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 95 VVLFTQGGLVGFDMLAR-----KVTY-LFDTNEET--ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp EEEEETTEEEEEETTTT-----EEEE-EECCTTCC--TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred EEEEECCEEEEEECCCC-----ceEE-ccCCcccc--cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence 33335699999999886 4433 33344443 34455 8899999985 679999999987 66543322
Q ss_pred ccCCCC------CCCCCCceEEEEEeecCcccccccCceEEEEcc---------------------------------CC
Q 014154 93 NAGDSG------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------------------------------KG 133 (430)
Q Consensus 93 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~g 133 (430)
...... .......+.++.|.+. . ..++.++. +.
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g-------~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPK-G-------SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTT-S-------SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCC-C-------CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 210000 0000001122333332 2 34554441 22
Q ss_pred eeEEEEeeecCccccCCCcceEEee-ecCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCC
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~ 207 (430)
.+.+|++.... ...+.. ..+...+..++|+|++++|++++.++ .|++||+.+++....+.......
T Consensus 236 ~l~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 236 TVGIYHLATGK--------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp EEEEEETTTTE--------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred EEEEEECCCCc--------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 34444432111 111110 12345688999999999999988775 89999999883332222110000
Q ss_pred CCCcCCcceeEEEEeecC--CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEEEEeCC-C---
Q 014154 208 LGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGS-G--- 280 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d-~--- 280 (430)
....+..++| +| ++++|+++..++.++||++......+..+..|...+.. ++|+|+++.|+.++.+ +
T Consensus 308 ----~~~~~~~~~~--sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~ 381 (706)
T 2z3z_A 308 ----YVEPLHPLTF--LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLE 381 (706)
T ss_dssp ----CCCCCSCCEE--CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred ----eECccCCcee--ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence 0012467789 88 99999999999999999876323346677777777876 7999999888766554 3
Q ss_pred -cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC----CcEEEEECCCCc
Q 014154 281 -DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQ 334 (430)
Q Consensus 281 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~ 334 (430)
.|..||+.+++. ..+. + ...+.+++|+|+|++|+....+ +.|++||+.+++
T Consensus 382 ~~l~~~d~~~~~~-~~l~-~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 382 RHFYCIDIKGGKT-KDLT-P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp BEEEEEETTCCCC-EESC-C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEEEcCCCCc-eecc-C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 677778877663 3343 3 5678999999999988776443 569999998877
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=2e-18 Score=156.94 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=169.3
Q ss_pred CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 132 ~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
++.+.+|+..... .+..+.. ...+..++++|++++++++ ..++.|.+||+.+++.+..+..+.......
T Consensus 68 ~~~v~~~d~~~~~--------~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 137 (353)
T 3vgz_A 68 GGVVYRLDPVTLE--------VTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE 137 (353)
T ss_dssp SEEEEEECTTTCC--------EEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred CccEEEEcCCCCe--------EEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence 4567777653221 3344433 4557889999999966555 557899999999998877765543211111
Q ss_pred cCCcceeEEEEeecCCCCEEEEEe--CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
..+..+.+++| +|+++++++++ .++.|.+||+.+++ .+..+..+...+.+++|+|++++|++++.++.|.+||+.
T Consensus 138 ~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 138 VRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp CCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred cCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 11223678899 88998877766 47889999999865 466666555668899999999999999999999999999
Q ss_pred CCeEEeeeeCC---CCCCeEEEEecCCCCeEEEEeC-CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cc
Q 014154 289 TGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NA 362 (430)
Q Consensus 289 ~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~ 362 (430)
+++.+..+... +...+..++|+|++++|++++. ++.|.+||+.+++.+..+.... . ..++|+|+|+. ++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~-~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 215 DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----S-LAVLFNPARNEAYVT 289 (353)
T ss_dssp TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----C-CCEEEETTTTEEEEE
T ss_pred CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----C-ceEEECCCCCEEEEE
Confidence 99988777641 1456788999999997776664 4899999999999888754321 1 57899999985 55
Q ss_pred cCCCCceEecCCCCC
Q 014154 363 AADAPMLEIQNGNDT 377 (430)
Q Consensus 363 ~~~d~~i~~~~~~~~ 377 (430)
...++.|.+|+....
T Consensus 290 ~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSY 304 (353)
T ss_dssp ETTTTEEEEEETTTT
T ss_pred ECCCCeEEEEECCCC
Confidence 667899999998654
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=3.5e-19 Score=157.51 Aligned_cols=219 Identities=7% Similarity=-0.014 Sum_probs=157.2
Q ss_pred ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCC
Q 014154 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSL 208 (430)
Q Consensus 130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~ 208 (430)
..++.+.+|++... .+... ..+...+.+++|+|++++|++++ ++.|++||+.+ ++.......+.
T Consensus 19 ~~~~~i~~~d~~~~---------~~~~~-~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~---- 83 (297)
T 2ojh_A 19 SMRSSIEIFNIRTR---------KMRVV-WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA---- 83 (297)
T ss_dssp CCCEEEEEEETTTT---------EEEEE-EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC----
T ss_pred CcceeEEEEeCCCC---------ceeee-ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc----
Confidence 45667788876422 22222 23567899999999999999876 77999999988 76654443321
Q ss_pred CCcCCcceeEEEEeecCCCCEEEEEe--CCCcEEEE--ECCCCCcceEEEeecCCCeEEEEecCCCCEEE-EEeCCCcEE
Q 014154 209 GIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLA 283 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~d~~i~ 283 (430)
...+.+++| +|++++|++++ .++.+.|| ++.++. ...+..+ ..+..++|+|++++|+ ++..++.++
T Consensus 84 ----~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~ 154 (297)
T 2ojh_A 84 ----TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFD 154 (297)
T ss_dssp ----CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred ----cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceE
Confidence 145788999 89999999998 33455555 444433 4445444 3589999999999887 777899999
Q ss_pred EEEcc--CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECC-CCceeeEEEeeccccceEEeeecccccc
Q 014154 284 SVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 284 iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 359 (430)
+|++. +++ ...+..+ ...+.++.|+|++++|+.++ .++.++||++. .+..+.. +..+ ...+..++|+|+|+
T Consensus 155 l~~~~~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~--~~~~-~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 155 IYSMDIDSGV-ETRLTHG-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER--ITDS-AYGDWFPHPSPSGD 229 (297)
T ss_dssp EEEEETTTCC-EEECCCS-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE--CCCC-SEEEEEEEECTTSS
T ss_pred EEEEECCCCc-ceEcccC-CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE--EecC-CcccCCeEECCCCC
Confidence 99864 343 3455555 67899999999999887766 58999999886 4444544 4444 45578999999999
Q ss_pred c-cccCCC-----------CceEecCCCCC
Q 014154 360 A-NAAADA-----------PMLEIQNGNDT 377 (430)
Q Consensus 360 ~-~~~~~d-----------~~i~~~~~~~~ 377 (430)
+ ++++.+ +.|.+|+....
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 7 555554 56899987653
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2.4e-19 Score=167.30 Aligned_cols=196 Identities=7% Similarity=-0.021 Sum_probs=141.1
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCC--cceEE----eeecCCCceEEEEEcCCCCEEE----EEeCCCeEEEEECCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSC--STVKS----WNVCASGTIAFSKVDISEKFSL----FGGKGVEVNVWDLDK 193 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~i~~----~~~~~~~~i~~~~~~~~~~~l~----~~~~d~~i~~~d~~~ 193 (430)
+.+++++.++ +.||............+ ..+.. ..+.+...|.+++|+|++++|+ +++.|+.|++||+.+
T Consensus 49 ~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~ 127 (434)
T 2oit_A 49 GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRT 127 (434)
T ss_dssp TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccc
Confidence 4777777666 77776432111000000 11111 1123456799999999999999 788899999999865
Q ss_pred C--------ee---eEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCe
Q 014154 194 C--------EK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI 261 (430)
Q Consensus 194 ~--------~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i 261 (430)
+ +. +..+.. |...|.+++| +|+ +.+|++++.||+|++||++++. .+.....|...|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~---------h~~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~v 195 (434)
T 2oit_A 128 FSNEAKQQKRPFAYHKLLKD---------AGGMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVAV 195 (434)
T ss_dssp HHCTTCSSCCCSEEEECCCS---------GGGSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGCE
T ss_pred cccCCcCCcceeeeeeccCC---------CCCceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCce
Confidence 4 11 122222 3478999999 776 7899999999999999999864 355566788899
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------CCCCeEEEEecCCCCeEEEE-eCCC------cEEEE
Q 014154 262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------CSGSIRSIARHPTLPIIASC-GLDS------YLRFW 328 (430)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~s~-~~dg------~i~iw 328 (430)
.+++|+|+|++|++|+.||.|++||++ ++....+..+ |...|.++.|++++.++++. +.|| .+++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999998 5555555443 12379999999988777543 3443 38999
Q ss_pred ECCCC
Q 014154 329 DIKTR 333 (430)
Q Consensus 329 d~~~~ 333 (430)
++.+.
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99865
No 154
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=2e-18 Score=155.59 Aligned_cols=226 Identities=8% Similarity=0.008 Sum_probs=162.4
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCee-eEeeC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEK-IWTAK 201 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~-~~~~~ 201 (430)
..+++...++.+.+|++.... .+...... ...+ .++|+|+++++++++. ++.|.+||+.+++. ...+.
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLE--------ILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCC--------EEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred EEEEEecCCCeEEEEeCcccc--------eeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 357788889999999875332 34444432 4455 9999999997777665 88999999998876 54444
Q ss_pred CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-e
Q 014154 202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-N 277 (430)
Q Consensus 202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~ 277 (430)
.+. ....+++| +|++++|+++..++ .|.+||+.+++ .+..+..+ ....+++|+|+|++|+++ .
T Consensus 81 ~~~---------~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~-~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 81 EGQ---------SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPIP-YDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp ECS---------SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEECC-TTEEEEEECTTSSCEEEEEE
T ss_pred cCC---------CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEECC-CCccceEECCCCCEEEEEec
Confidence 332 23334888 89999998555553 89999999865 35555543 567999999999866655 5
Q ss_pred CCCc-EEEEEccCCeEE----eeeeCCCCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCce---eeEEEeeccccce
Q 014154 278 GSGD-LASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQL---LSAVFLKQHLNEV 348 (430)
Q Consensus 278 ~d~~-i~iwd~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~ 348 (430)
.++. |.+|++.....+ ...... ...+..++|+|+|++|+.+ ..++.|++||+.+++. +..+. .+ ..
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~--~~ 222 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISG-GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TN--NL 222 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECS-SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CS--SC
T ss_pred CCCceEEEEEECCCCcEeecCCccccC-CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CC--CC
Confidence 5588 999998754322 111122 4568999999999966554 4689999999999988 66542 22 33
Q ss_pred EEeeeccccccc--cccCCCCceEecCCCCC
Q 014154 349 VFDSAFADKEVA--NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 349 v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~ 377 (430)
+..++|+|||++ ++...++.|.+|+....
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 578999999995 45556888999998653
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.8e-17 Score=150.50 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=154.2
Q ss_pred eEEEEcc---CCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC-C--e
Q 014154 125 TLLTCTT---KGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDK-C--E 195 (430)
Q Consensus 125 ~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~--~ 195 (430)
.+++++. ++.+.+|++... ..+... ..+...+..++|+|++++|++++ .++.|.+|++.. + .
T Consensus 52 ~l~~~~~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 52 CLYSVDKEDDEGGIAAWQIDGQ---------TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETT---------EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred eEEEEEecCCCceEEEEEecCC---------cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 3555544 578888887422 222221 12456788999999999998887 678999999963 2 2
Q ss_pred eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce--EEEeec-CCCeEEEEecCCCCE
Q 014154 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFDFR-ETPIKAVAEEPDSFN 272 (430)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~i~~~~~sp~~~~ 272 (430)
.+..+...............+.+++| +|+++++++...++.|.+|++....... ..+..+ ...+..++|+|+|++
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~--spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~ 200 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDL--TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY 200 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEE--CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred ecceeecCCCCCCccccCCCceEEEE--CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence 23322211100000011245788999 8999966666678899999998322212 222222 336788999999997
Q ss_pred EEEE-eCCCcEEEEEccC--CeE--EeeeeCCCC-----CCeEEEEecCCCCeE-EEEeCCCcEEEEECCC-C--ceeeE
Q 014154 273 IYIG-NGSGDLASVDIRT--GKL--LGCFIGKCS-----GSIRSIARHPTLPII-ASCGLDSYLRFWDIKT-R--QLLSA 338 (430)
Q Consensus 273 l~~~-~~d~~i~iwd~~~--~~~--~~~~~~~~~-----~~v~~i~~~~~~~~l-~s~~~dg~i~iwd~~~-~--~~~~~ 338 (430)
|+++ ..++.|.+|++.. ++. +..+..... ..+..++|+|+|++| ++...++.|.+|++.. + +.+..
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence 6664 5678999999874 553 333333211 358899999999977 5556789999999973 3 23333
Q ss_pred EEeeccccceEEeeeccccccc-ccc-CCCCceEecCCCC
Q 014154 339 VFLKQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQNGND 376 (430)
Q Consensus 339 ~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d~~i~~~~~~~ 376 (430)
+..+ ...+..++|+|||++ +++ ..++.+.+|+.+.
T Consensus 281 --~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 281 --ISTE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp --EECS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred --EecC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 3333 233578999999986 444 4568999996643
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.2e-18 Score=155.36 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=166.7
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~ 202 (430)
..++++..++.+.+|++.... .+..+.......+..++|+|+++++++ ...++.|.+||+.+++....+..
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASDT--------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp EEEEEEETTTEEEEEETTTTE--------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred EEEEEeCCCCeEEEEECCCCc--------EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 467788889999999875322 344444332225788999999987654 45688999999999888766543
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC------------CcEEEEECCCCCc--ceEEEeecCCCeEEEEecC
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------------HQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEP 268 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~sp 268 (430)
..... .....+..++| +|++++|++++.+ +.|.+||+.+++. .+..+..+ ..+.+++|+|
T Consensus 84 ~~~~~---~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 157 (349)
T 1jmx_B 84 SSVPG---EVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAAD 157 (349)
T ss_dssp CCSTT---EEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECT
T ss_pred ccccc---cccccccceEE--CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECC
Confidence 21000 00123678889 8999999998865 8999999987432 23344433 4688999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC------------------------------------------------
Q 014154 269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------------------------------------------------ 300 (430)
Q Consensus 269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------ 300 (430)
+++ +++++ +.|.+||+.+++.+..+..+.
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 66654 349999999988776665321
Q ss_pred -------------------CCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 301 -------------------SGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 301 -------------------~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
...+..++|+| ++++|+++ ++.|.+||+.+++.+..+... ..+.+++|+|+|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGDK 308 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSSSSC
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCCCCE
Confidence 01345677889 99998888 889999999999988775322 22578999999987
Q ss_pred -cccCCCCceEecCCCCC
Q 014154 361 -NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 361 -~~~~~d~~i~~~~~~~~ 377 (430)
++++.++.|.+|+....
T Consensus 309 l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEESBSSEEEEEETTTT
T ss_pred EEEecCCCeEEEEecccc
Confidence 66778899999998764
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=5.3e-19 Score=176.61 Aligned_cols=325 Identities=10% Similarity=0.023 Sum_probs=195.1
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCCCCceeEEeec---------CCeEEEecCC
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARK---------NGLTDILNPL 83 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~---------dg~i~iwd~~ 83 (430)
...++..+.||.|++||+.++ +....+..+... ..+..+.+ +|||++|++++. ++.|++||+.
T Consensus 26 dg~~~~~~~d~~i~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 26 GQEYLHQSADNNIVLYNIETG-----QSYTILSNRTMKSVNASNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp SSEEEEECTTSCEEEEESSSC-----CEEEEECHHHHHTTTCSEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred CCeEEEEcCCCCEEEEEcCCC-----cEEEEEccccccccceeeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 346677778999999999987 444444433220 11345555 889999999876 7899999998
Q ss_pred CCccc--ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCc-ceEEeeec
Q 014154 84 NGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVC 160 (430)
Q Consensus 84 ~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~-~i~~~~~~ 160 (430)
+++.+ ..+. ..+..+.|.+.. ..++.+ .++.+.+|++.......-..++ ...++. .
T Consensus 99 ~g~~~~~~~l~-----------~~~~~~~~SPDG--------~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~-g 157 (719)
T 1z68_A 99 NGEFVRGNELP-----------RPIQYLCWSPVG--------SKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFN-G 157 (719)
T ss_dssp TTEECCSSCCC-----------SSBCCEEECSST--------TCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEE-S
T ss_pred CCccccceecC-----------cccccceECCCC--------CEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEc-c
Confidence 88752 1111 133334444332 244444 5778999987533210000000 000111 1
Q ss_pred CC---------CceEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCeee
Q 014154 161 AS---------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDKCEKI 197 (430)
Q Consensus 161 ~~---------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~d~~~~~~~ 197 (430)
+. ....+++|+|+|++|++++.|. .|++||+.+++..
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 11 1125899999999999987652 7889999887642
Q ss_pred --EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEE----CCCCCcceEEE----eecCCCeE-
Q 014154 198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYD----TSAQRRPVMSF----DFRETPIK- 262 (430)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~i~- 262 (430)
..+.... . ...+...+..++| +||+.++++.... ..|.+|| +.+++. ...+ ..|...+.
T Consensus 238 ~~~~~~~~~--~-~~~~~~~~~~~~~--SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~ 311 (719)
T 1z68_A 238 GPQEVPVPA--M-IASSDYYFSWLTW--VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEHIEESRTGWAGG 311 (719)
T ss_dssp CCEECCCCH--H-HHTSCEEEEEEEE--SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEEEEECSSSCSSS
T ss_pred ceeEccCCc--c-CCCCcceEEEeEE--eCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEecccccCCceEcc
Confidence 1211100 0 0012367899999 8998777775433 2488999 766442 2222 45666666
Q ss_pred ----EEEecCCCCEEEE--EeCCC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC-----CcEEEEE
Q 014154 263 ----AVAEEPDSFNIYI--GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWD 329 (430)
Q Consensus 263 ----~~~~sp~~~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~iwd 329 (430)
.+.|+|||+.|+. +..++ .|.+||+.+++ ...+..+ ...+..+.++ ++..|+..+.+ +.+++|.
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 8899999986654 43455 57777887766 3455554 5567887777 77777666654 7888888
Q ss_pred CCC--Cce-eeEEE--eeccccceEEeeeccccccc-c-ccCCC--CceEecCCCC
Q 014154 330 IKT--RQL-LSAVF--LKQHLNEVVFDSAFADKEVA-N-AAADA--PMLEIQNGND 376 (430)
Q Consensus 330 ~~~--~~~-~~~~~--~~~~~~~~v~~~~~s~~g~~-~-~~~~d--~~i~~~~~~~ 376 (430)
+.. +.. ...+. +.++ ...+..+.|+|+++. + ..+.+ ..+.+|+...
T Consensus 389 ~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 389 ISIGSYPPSKKCVTCHLRKE-RCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp EECSSSSCCEEESSTTTTTT-TBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred EeCCCCCCCceeccCccCCC-CCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence 753 421 22211 1112 234578999999987 3 23333 4677787643
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1.1e-16 Score=146.00 Aligned_cols=238 Identities=10% Similarity=0.063 Sum_probs=153.6
Q ss_pred eEEEEccC----CeeEEEEeeecCccccCCCcceEEe-eec-CCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeee
Q 014154 125 TLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSW-NVC-ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKI 197 (430)
Q Consensus 125 ~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~i~~~-~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~ 197 (430)
.+++++.+ +.+.+|.+.... +.+... ... +......+++ ++++|+++. .++.|.+|++.....+
T Consensus 63 ~l~~~~~~~~~~~~v~~~~~~~~~-------g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~ 133 (361)
T 3scy_A 63 FVYSVNEFSKDQAAVSAFAFDKEK-------GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL 133 (361)
T ss_dssp EEEEEECCSSTTCEEEEEEEETTT-------TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB
T ss_pred EEEEEEccCCCCCcEEEEEEeCCC-------CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC
Confidence 56666654 788999886321 233222 222 3456677777 778777766 5789999999754332
Q ss_pred Eee------CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCc------ce------EEEeecC
Q 014154 198 WTA------KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR------PV------MSFDFRE 258 (430)
Q Consensus 198 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~~------~~~~~~~ 258 (430)
... ...... ....+...+.+++| +|++++|++++ .++.|.+|++..... .. .....+.
T Consensus 134 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 210 (361)
T 3scy_A 134 LPASDVIEFKGSGPD-KERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG 210 (361)
T ss_dssp CSCSEEEECCCCCSC-TTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred cccceeEEccCCCCC-ccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence 211 111000 00011234678999 89999766655 488999999875431 11 1122234
Q ss_pred CCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeE--EeeeeCC--CCCCeEEEEecCCCCeEEEEeCC--CcEEEEECC
Q 014154 259 TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL--LGCFIGK--CSGSIRSIARHPTLPIIASCGLD--SYLRFWDIK 331 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d--g~i~iwd~~ 331 (430)
..+..++|+|+|++|++++ .++.|.+||+.+++. +..+... +...+..++|+|+|++|+++..+ +.|.+|++.
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 5678999999999888877 689999999998765 3333221 13457899999999988776654 899999995
Q ss_pred --CCceeeEEEeeccccceEEeeeccccccc-ccc-CCCCceEecCCCC
Q 014154 332 --TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQNGND 376 (430)
Q Consensus 332 --~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d~~i~~~~~~~ 376 (430)
+++......+.. ...+.+++|+|||++ +++ ..++.|.+|..+.
T Consensus 291 ~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 291 ETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp TTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 455332211222 334578999999997 444 4789999987654
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=7.3e-17 Score=147.54 Aligned_cols=284 Identities=12% Similarity=0.024 Sum_probs=171.7
Q ss_pred cceeeecCC--CceEEEEccCCCCCcceeeeecC-CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CCcccce
Q 014154 15 LRALTFDSL--GLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVA 90 (430)
Q Consensus 15 ~~l~t~~~d--g~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~ 90 (430)
.+++.|+.. +.|.+|++... .+....+.... ..... ...+.+ +|+|++|++++.+ .|.+|++. +++....
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~~-~g~l~~~~~~~~~~~~~--~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~ 76 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIPQDEP--ISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHE 76 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECCTTCC--CSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEE
T ss_pred EEEEEEEccCCCcEEEEEEECC-CCCEEEeeEEccCCCCC--CcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEe
Confidence 345666543 56888876432 12222222221 12223 334455 7889999998887 99999997 6765432
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCce--EEEEc-------------cCCeeEEEEeeecCccccCCCcceE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT--LLTCT-------------TKGKASMRSIEVTKVSAESSCSTVK 155 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~g~~~v~~~~~~~~~~~~~~~~i~ 155 (430)
...... .....+.+ ..+. .. ++++. .++.+.+|.+..... ....+.
T Consensus 77 ~~~~~~-------g~~~~~~~-spdg-------~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~ 137 (365)
T 1jof_A 77 ASHPIG-------GHPRANDA-DTNT-------RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQ 137 (365)
T ss_dssp EEEECC-------SSGGGGCT-TSCC-------EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEE
T ss_pred eEeecC-------CCCccEEE-CCCC-------CEEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEe
Confidence 221000 00000111 1111 11 22332 577889998752110 001223
Q ss_pred EeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 156 SWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD-KCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
.+...+...+.+++|+|++++|+++.. ++.|++|++. +++.. ..+.... +...+..++| +|++++|+
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------~g~~p~~~~~--spdg~~l~ 208 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAM--HPTGNYLY 208 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEE--CTTSSEEE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------CCCCCCEeEE--CCCCCEEE
Confidence 332234567999999999998887764 6799999998 66543 2221100 0145788999 89999988
Q ss_pred EEeC-CCcEEEEECC--CCCcc--eEEEee-------cCC------CeEEEE-ecCCCCEEEEEeCC-C-----cEEEEE
Q 014154 232 AGTN-DHQVRLYDTS--AQRRP--VMSFDF-------RET------PIKAVA-EEPDSFNIYIGNGS-G-----DLASVD 286 (430)
Q Consensus 232 s~~~-dg~i~iwd~~--~~~~~--~~~~~~-------~~~------~i~~~~-~sp~~~~l~~~~~d-~-----~i~iwd 286 (430)
+++. ++.|.+|++. +++.. ...+.. |.. .+..++ |+|||++|+++..+ + .|.+|+
T Consensus 209 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~ 288 (365)
T 1jof_A 209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK 288 (365)
T ss_dssp EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred EEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence 8775 6899999875 33321 112221 121 478999 99999998877643 2 899999
Q ss_pred cc-CCeEEe---eeeCCCCCCeEEEEecC---CCCeEEEEeCC-CcEEEEECCCC
Q 014154 287 IR-TGKLLG---CFIGKCSGSIRSIARHP---TLPIIASCGLD-SYLRFWDIKTR 333 (430)
Q Consensus 287 ~~-~~~~~~---~~~~~~~~~v~~i~~~~---~~~~l~s~~~d-g~i~iwd~~~~ 333 (430)
+. +++... .+..+ ...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 289 ~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 289 LRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 96 666543 23333 44567889999 89999999864 89999998765
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=4.7e-18 Score=165.49 Aligned_cols=257 Identities=12% Similarity=0.034 Sum_probs=173.8
Q ss_pred cceeeecC-CCceEEEEccCCCCCcceeeeecCCCC-CCcceeeeeecCCCCCceeEEeec---CCeEEEecCCC---Cc
Q 014154 15 LRALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN---GD 86 (430)
Q Consensus 15 ~~l~t~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~---~~ 86 (430)
.+++.++. ||+++||++.++ +.. .+..+. .. +....| +|| +++++++. +....||.+.. +.
T Consensus 34 ~~la~~s~~~g~~~lw~~~~g-----~~~-~lt~~~~~~--~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~ 102 (582)
T 3o4h_A 34 DKLLVVGFSEGSVNAYLYDGG-----ETV-KLNREPINS--VLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGE 102 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETT-----EEE-ECCSSCCSE--ECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred CeEEEEEccCCceeEEEEcCC-----CcE-eeecccccc--cccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence 34666555 999999999775 333 344443 34 344455 677 77777664 45566765533 22
Q ss_pred ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154 87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA 166 (430)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 166 (430)
.. .+... .......+.+... ..+++....+...+|++.... ..++... . . .
T Consensus 103 ~~-~l~~~---------~~~~~~~~s~dg~-------~~~~~s~~~~~~~l~d~~~g~--------~~~l~~~-~-~--~ 153 (582)
T 3o4h_A 103 EQ-RLEAV---------KPMRILSGVDTGE-------AVVFTGATEDRVALYALDGGG--------LRELARL-P-G--F 153 (582)
T ss_dssp CE-ECTTS---------CSBEEEEEEECSS-------CEEEEEECSSCEEEEEEETTE--------EEEEEEE-S-S--C
T ss_pred cc-cccCC---------CCceeeeeCCCCC-------eEEEEecCCCCceEEEccCCc--------EEEeecC-C-C--c
Confidence 11 22110 1222234433332 344555555555599875332 2233321 1 2 7
Q ss_pred EEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--cEE
Q 014154 167 FSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVR 240 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~ 240 (430)
+++|+|+|++|++++.+ +.|++||+.+++.. .+..+. ..+..++| +|||+.|+++..++ .|+
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~---------~~~~~~~~--SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE---------GSFSSASI--SPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS---------CEEEEEEE--CTTSCEEEEEECSSCEEEE
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC---------CccccceE--CCCCCEEEEccCCCeeEEE
Confidence 89999999999988877 78999999887654 444432 56789999 99999999888888 899
Q ss_pred EEECCCCCcceEEEeecCCCeEEEE--------ecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVA--------EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~--------~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
+||+.+++. . .+..|...+..++ |+|||.++++++.++.+++|++ ++.+. .. ...+.+++|+ +
T Consensus 222 ~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~-~~~v~~~~~s-d 292 (582)
T 3o4h_A 222 TVDPRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP-QGNHGRVVLW-R 292 (582)
T ss_dssp EECTTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC-SSEEEEEEEE-T
T ss_pred EEcCCCCcE-E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC-CCceEEEEec-C
Confidence 999998653 4 6667777777777 9999988899999999999999 76654 22 4678999999 9
Q ss_pred CCeEEEEeCCC---cEEEEECCC
Q 014154 313 LPIIASCGLDS---YLRFWDIKT 332 (430)
Q Consensus 313 ~~~l~s~~~dg---~i~iwd~~~ 332 (430)
++++++++.+. .+++||..+
T Consensus 293 g~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 293 GKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TEEEEEEEETTEEEEEEEETTCC
T ss_pred CEEEEEEcCCCCCCeEEEEcCCC
Confidence 99988888774 477777653
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.3e-16 Score=145.87 Aligned_cols=236 Identities=12% Similarity=0.018 Sum_probs=152.8
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE--EEEEe-------------CCCeEEEE
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF--SLFGG-------------KGVEVNVW 189 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~--l~~~~-------------~d~~i~~~ 189 (430)
.++++..+ .+.+|++.... ....+......+....++|+|++++ ++++. .++.+.+|
T Consensus 53 ~l~~~~~~-~v~~~~~~~~g-------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 53 NIYGAAMK-KWSSFAVKSPT-------EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp EEEEEEBT-EEEEEEEEETT-------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred EEEEEccc-eEEEEEECCCC-------CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence 56666666 89999875211 1222222221233556889999994 44553 68899999
Q ss_pred ECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECC-CCCcc-eEEEe--ecCCCeEE
Q 014154 190 DLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTS-AQRRP-VMSFD--FRETPIKA 263 (430)
Q Consensus 190 d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~-~~~~~--~~~~~i~~ 263 (430)
++. +++....+..... .+...+.+++| +|+|++|+++.. ++.|++||+. +++.. +..+. .|...+..
T Consensus 125 ~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 125 SVSETGKLEKNVQNYEY-----QENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp EECTTCCEEEEEEEEEC-----CTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ccCCCCcCcceEeeEEe-----CCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 997 4544332221000 01145888999 899998887664 6799999998 55421 22333 23567899
Q ss_pred EEecCCCCEEEEEeC-CCcEEEEEcc--CCeEE---eeee---CCC---CC------CeEEEE-ecCCCCeEEEEeCCC-
Q 014154 264 VAEEPDSFNIYIGNG-SGDLASVDIR--TGKLL---GCFI---GKC---SG------SIRSIA-RHPTLPIIASCGLDS- 323 (430)
Q Consensus 264 ~~~sp~~~~l~~~~~-d~~i~iwd~~--~~~~~---~~~~---~~~---~~------~v~~i~-~~~~~~~l~s~~~dg- 323 (430)
++|+|+|++|++++. ++.|.+|++. +++.. ..+. ... .. .+..++ |+|+|++|+++..+.
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 999999999988775 6899999765 56542 1222 110 11 488999 999999887775432
Q ss_pred -----cEEEEECC-CCceeeEEE-eeccccceEEeeeccc---cccc-cccCC-CCceEecCCCC
Q 014154 324 -----YLRFWDIK-TRQLLSAVF-LKQHLNEVVFDSAFAD---KEVA-NAAAD-APMLEIQNGND 376 (430)
Q Consensus 324 -----~i~iwd~~-~~~~~~~~~-~~~~~~~~v~~~~~s~---~g~~-~~~~~-d~~i~~~~~~~ 376 (430)
.|.+|++. +++...... ...+ ......++|+| ||++ ++++. ++.|.+|+.+.
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 89999996 666543221 2222 22346789999 8988 55554 58999998765
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=7e-16 Score=140.45 Aligned_cols=294 Identities=10% Similarity=0.024 Sum_probs=184.6
Q ss_pred CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCccccee
Q 014154 22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI 91 (430)
Q Consensus 22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~ 91 (430)
.|+.|.+||..++ +++..+..+..+ .+.+ +|||++|+++. .++.|.+||..+++.+..+
T Consensus 29 ~d~~v~v~D~~t~-----~~~~~i~~g~~p----~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i 97 (361)
T 2oiz_A 29 TESRVHVYDYTNG-----KFLGMVPTAFNG----HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI 97 (361)
T ss_dssp GGCEEEEEETTTC-----CEEEEEECCEEE----EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred ccCeEEEEECCCC-----eEEEEecCCCCC----ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence 4789999999887 566666544332 4455 88999999876 3678999999888877776
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK 169 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 169 (430)
..... .+. .......+.+.+.. ..++++.. ++.+.+|++.... .+... +.... ...+.
T Consensus 98 ~~~~~-~~~-~g~~p~~i~~spdg--------~~l~v~n~~~~~~v~v~d~~~~~--------~~~~~-i~~~~-~~~v~ 157 (361)
T 2oiz_A 98 SLPPK-RVQ-GLNYDGLFRQTTDG--------KFIVLQNASPATSIGIVDVAKGD--------YVEDV-TAAAG-CWSVI 157 (361)
T ss_dssp EECTT-BCC-BCCCGGGEEECTTS--------SEEEEEEESSSEEEEEEETTTTE--------EEEEE-GGGTT-EEEEE
T ss_pred EcCcc-ccc-cCCCcceEEECCCC--------CEEEEECCCCCCeEEEEECCCCc--------EEEEE-ecCCC-cceeE
Confidence 53210 000 01122224443332 35555443 4678888764221 22210 12122 22245
Q ss_pred EcCCC-CEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154 170 VDISE-KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247 (430)
Q Consensus 170 ~~~~~-~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 247 (430)
+.|++ ..+++.+.||.+.+|++.. ++........ ..... . .....+.+ .+++..++..+.++.|.++|+...
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~--~~~~~-~-~~~~~~~~--~~~g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK--QMFSV-K-DDPIFIAP--ALDKDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC--CCSCT-T-TSCBCSCC--EECSSEEEEEBTTSEEEEEECSSS
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc--ceEcC-C-CCceEEEe--cccCCEEEEEeCCCeEEEEEecCC
Confidence 66754 6778888999999999865 4443221100 00000 0 01112223 456677777788999999999754
Q ss_pred Ccce-EEEee------cC----CCeEEEEecCCCCEEEEEeC-----------CCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154 248 RRPV-MSFDF------RE----TPIKAVAEEPDSFNIYIGNG-----------SGDLASVDIRTGKLLGCFIGKCSGSIR 305 (430)
Q Consensus 248 ~~~~-~~~~~------~~----~~i~~~~~sp~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~ 305 (430)
...+ ..+.. +. .....++|+|+++.++++.. .+.|.+||+.+++.+.++..+ . +.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~ 308 (361)
T 2oiz_A 232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--AL 308 (361)
T ss_dssp SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CC
T ss_pred CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--ee
Confidence 3211 12111 00 11123789999888887653 358999999999999999987 4 89
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCC--ceeeEEEeeccccceEEeeecccccc
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAVFLKQHLNEVVFDSAFADKEV 359 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~ 359 (430)
+++|+|+|++|++++. +.|.+||..++ +.+..+ ... ......++++|+|.
T Consensus 309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i--~~~-G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI--EGA-AEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE--TTS-CSSEEEEEECCCSC
T ss_pred EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe--ccC-CCCcEEEEecCCCC
Confidence 9999999999998887 99999999999 888773 222 33347889999985
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=5.3e-17 Score=149.68 Aligned_cols=292 Identities=10% Similarity=0.019 Sum_probs=179.1
Q ss_pred eeeeecCCCCCCcce---eeeeecCCCCCceeEEeec-CC--eEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEee
Q 014154 40 KVVERWGDPHSSNCV---LAASIDDSQNDPLLAVARK-NG--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK 113 (430)
Q Consensus 40 ~~~~~~~~~~~~~~~---~~~~~~~~p~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 113 (430)
..+..+..|...... ....| +|||++|+.++. +| .|.+||+.+++......... ..+.... |.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~--------~~~~~~~-~s 89 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCF--TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG--------DNTFGGF-LS 89 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCB--CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC--------BCSSSCE-EC
T ss_pred cceEEecCCcccccchhhcCccC--CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC--------CCccceE-Ec
Confidence 445556655543211 11344 899999999876 67 48888988777554433211 1111123 33
Q ss_pred cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE--EEEcCCCCEEEEE-----------
Q 014154 114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF--SKVDISEKFSLFG----------- 180 (430)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~--~~~~~~~~~l~~~----------- 180 (430)
... ..++....++.+.+|++.... ...++.. +...+.. ..++|++.+++..
T Consensus 90 pdg-------~~l~~~~~~~~l~~~d~~~g~--------~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 90 PDD-------DALFYVKDGRNLMRVDLATLE--------ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp TTS-------SEEEEEETTTEEEEEETTTCC--------EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred CCC-------CEEEEEeCCCeEEEEECCCCc--------ceeeeec-hhhcccccceeECCCCCeeccccccCccccccc
Confidence 332 467777777888888875332 3334442 2333332 3348899888742
Q ss_pred -----------eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC------CcEEEE
Q 014154 181 -----------GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLY 242 (430)
Q Consensus 181 -----------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~iw 242 (430)
..+..|++||+.+++....... ...+..++| +| ++..|+.+..+ ..|.++
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----------NQWLGHPIY--RPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred ccchhhhhhccCCcceEEEEECCCCceEEeecC----------CccccccEE--CCCCCCEEEEEEecCCCCCcceEEEE
Confidence 2346799999998765433322 145788899 89 99988887764 378888
Q ss_pred ECCCCCcceEEEeecC--CCeEEEEecCCCCEEEEEeC-CC----cEEEEEccCCeEE--eeeeCCCCC---CeEEEEec
Q 014154 243 DTSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGNG-SG----DLASVDIRTGKLL--GCFIGKCSG---SIRSIARH 310 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~-d~----~i~iwd~~~~~~~--~~~~~~~~~---~v~~i~~~ 310 (430)
|+.... ...+..+. ..+..++|+|||+.|+..+. ++ .|++||+.+++.. ..+.++ .. ....+.|+
T Consensus 222 d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~s 298 (388)
T 3pe7_A 222 NEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGSLMV 298 (388)
T ss_dssp ETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSSEEE
T ss_pred eCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCCeEc
Confidence 887543 34444443 25778999999997765443 22 3999999988753 233321 00 01223799
Q ss_pred CCCCeEEEE---------eCCCcEEEEECCCCceeeEEEeeccccc----------eEEeeeccccccc-c-ccCCCCce
Q 014154 311 PTLPIIASC---------GLDSYLRFWDIKTRQLLSAVFLKQHLNE----------VVFDSAFADKEVA-N-AAADAPML 369 (430)
Q Consensus 311 ~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~v~~~~~s~~g~~-~-~~~~d~~i 369 (430)
|+|+.|+.. ..+..|++||+.+++.... ..+... .+..++|+|||+. + ++..++..
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~ 375 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV---ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKP 375 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTEEEEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSC
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe---ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCce
Confidence 999887754 4566899999998776432 223220 3578899999987 3 44567777
Q ss_pred EecCCCC
Q 014154 370 EIQNGND 376 (430)
Q Consensus 370 ~~~~~~~ 376 (430)
.+|..+.
T Consensus 376 ~l~~~~l 382 (388)
T 3pe7_A 376 ALYLATL 382 (388)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 7876543
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=171.76 Aligned_cols=286 Identities=7% Similarity=-0.081 Sum_probs=178.2
Q ss_pred eeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc----
Q 014154 56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---- 131 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---- 131 (430)
...| +|+|++++++ .|+.|++||+.+++....+..+... ...+..+.+.+.. ..++.++.
T Consensus 20 ~~~~--s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~SpDg--------~~la~~~~~~~~ 83 (719)
T 1z68_A 20 FPNW--ISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK-----SVNASNYGLSPDR--------QFVYLESDYSKL 83 (719)
T ss_dssp CCEE--SSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH-----TTTCSEEEECTTS--------SEEEEEEEEEEC
T ss_pred ccEE--CCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc-----ccceeeEEECCCC--------CeEEEEecCcee
Confidence 3445 8889766655 6899999999988866555432100 0013444544332 35555554
Q ss_pred -----CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154 132 -----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 132 -----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 206 (430)
++.+.+|++..... +....+ ...+..++|+|+|+.|+++. ++.|++|++.+++...........
T Consensus 84 ~~~s~~~~i~~~d~~~g~~--------~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~ 152 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEF--------VRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN 152 (719)
T ss_dssp SSSCEEEEEEEEETTTTEE--------CCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT
T ss_pred EEeecceEEEEEECCCCcc--------ccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC
Confidence 56788887643220 000111 24578899999999999886 679999999887765332211110
Q ss_pred CCCCcCCcc---------eeEEEEeecCCCCEEEEEeCCC----------------------------------cEEEEE
Q 014154 207 SLGIFTPTW---------FTSAAFLSIDDHRKFVAGTNDH----------------------------------QVRLYD 243 (430)
Q Consensus 207 ~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iwd 243 (430)
.....++.+ ..+++| +|||+.|++++.|. .|++||
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred CeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 000001122 257899 99999999988652 788999
Q ss_pred CCCCCcc--eE-----EEeecCCCeEEEEecCCCCEEEEEeCC----CcEEEEE----ccCCeEEeee----eCCCCCCe
Q 014154 244 TSAQRRP--VM-----SFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVD----IRTGKLLGCF----IGKCSGSI 304 (430)
Q Consensus 244 ~~~~~~~--~~-----~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~----~~~~~~~v 304 (430)
+.++... +. .+..|...+.+++|+||++++++.... ..|.+|| +.++++...+ .+| ...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceE
Confidence 9875421 11 123467789999999998777775433 2488999 8888776555 354 6666
Q ss_pred E-----EEEecCCCCeEEE--EeCCC--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC-----CCce
Q 014154 305 R-----SIARHPTLPIIAS--CGLDS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-----APML 369 (430)
Q Consensus 305 ~-----~i~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~-----d~~i 369 (430)
. .+.|+|+|+.|+. ...+| .|++||+.+++. .. +..+ ...+..+.++ ++.. ++.+. ++..
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~--lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQ--ITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EE--CSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Ee--cccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 6 7899999986554 44555 577788877663 23 3333 2234566666 6655 44333 4788
Q ss_pred EecCCCC
Q 014154 370 EIQNGND 376 (430)
Q Consensus 370 ~~~~~~~ 376 (430)
++|..+.
T Consensus 385 ~l~~~~~ 391 (719)
T 1z68_A 385 NIYRISI 391 (719)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887653
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=8.3e-17 Score=160.98 Aligned_cols=243 Identities=7% Similarity=-0.057 Sum_probs=154.7
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcce---eeeeecCCCCCceeEEeecC---------CeEEEecC
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCV---LAASIDDSQNDPLLAVARKN---------GLTDILNP 82 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~g~~l~~g~~d---------g~i~iwd~ 82 (430)
..++..+ ||.|++||+.++ +....+..|...... ..+.+ +|||++|+.++.+ +.+.+||+
T Consensus 28 g~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 28 HEYLYKQ-ENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp SEEEEEE-TTEEEEEETTTC-----CEEEEECTTTTTTCCSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CcEEEEc-CCcEEEEECCCC-----ceEEEEechhhhhhcccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 3444444 899999999987 445556666543221 12455 8999999998876 33446665
Q ss_pred CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC
Q 014154 83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS 162 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~ 162 (430)
.+++... + ..+.
T Consensus 100 ~~~~~~~-l-------------------------------------------------------------------~~~~ 111 (740)
T 4a5s_A 100 NKRQLIT-E-------------------------------------------------------------------ERIP 111 (740)
T ss_dssp TTTEECC-S-------------------------------------------------------------------SCCC
T ss_pred CCCcEEE-c-------------------------------------------------------------------ccCC
Confidence 5443111 0 0122
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc---------eeEEEEeecCCCCEEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW---------FTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~ 233 (430)
..+...+|+|+|+.|+.+. ++.|++|++.++.................++.+ ...+.| +|||+.|+.+
T Consensus 112 ~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~ 188 (740)
T 4a5s_A 112 NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYA 188 (740)
T ss_dssp TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEE
T ss_pred CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEE
Confidence 4567889999999999885 679999999887654322111100000001111 234788 9999999987
Q ss_pred eCCC------------------------------------cEEEEECCC---CCc-ceEEEee------cCCCeEEEEec
Q 014154 234 TNDH------------------------------------QVRLYDTSA---QRR-PVMSFDF------RETPIKAVAEE 267 (430)
Q Consensus 234 ~~dg------------------------------------~i~iwd~~~---~~~-~~~~~~~------~~~~i~~~~~s 267 (430)
+.|. .|++||+.+ +.. ....+.. |...+..++|+
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 5332 478899887 631 1233432 66778999999
Q ss_pred CCCCEEEEEeC----CCcEEEEEccCCe----EE--eee--eCCCCCCeE-----EEEecCCCCeEE-EEeC-C--CcEE
Q 014154 268 PDSFNIYIGNG----SGDLASVDIRTGK----LL--GCF--IGKCSGSIR-----SIARHPTLPIIA-SCGL-D--SYLR 326 (430)
Q Consensus 268 p~~~~l~~~~~----d~~i~iwd~~~~~----~~--~~~--~~~~~~~v~-----~i~~~~~~~~l~-s~~~-d--g~i~ 326 (430)
|||+.++.... +..|++||+.+++ +. ..+ ..+ ...|. .+.|+|||+.|+ ..+. + ..|+
T Consensus 269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~ 347 (740)
T 4a5s_A 269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHIC 347 (740)
T ss_dssp ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEE
T ss_pred CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEE
Confidence 99997665543 2379999999887 32 222 334 44444 788999999876 6653 3 4688
Q ss_pred EEECCCCceee
Q 014154 327 FWDIKTRQLLS 337 (430)
Q Consensus 327 iwd~~~~~~~~ 337 (430)
+||+.+++...
T Consensus 348 ~~~~~~~~~~~ 358 (740)
T 4a5s_A 348 YFQIDKKDCTF 358 (740)
T ss_dssp EEETTCSSCEE
T ss_pred EEECCCCceEe
Confidence 99988776554
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=1.1e-15 Score=137.63 Aligned_cols=208 Identities=10% Similarity=-0.004 Sum_probs=148.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEe-CCCcE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT-NDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~-~dg~i 239 (430)
.....++++++++++++...++.|++||..... .+..+...........+...+..+++ +| ++.++++.+ .++.|
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEE
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeE
Confidence 467889999999988888888999999986442 34444221100000112246789999 78 788888876 68999
Q ss_pred EEEECCCCCcceEEEeecC----------CCeEEEEecCC-CCEEEEEeCCCcEEEEEccCCeEEeeeeCC-CCCCeEEE
Q 014154 240 RLYDTSAQRRPVMSFDFRE----------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI 307 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~----------~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i 307 (430)
++||.. +. .+..+.... .....|+++|+ +.++++...++.|++||..+++.+..+... +...+..+
T Consensus 169 ~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 169 VQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 999954 33 345553322 23789999998 677777778899999999889988887532 15678899
Q ss_pred EecCCCCeEEEE-------eCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 308 ARHPTLPIIASC-------GLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 308 ~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+|+| +..+++. ..+..|++|++.+++.+..+.. .++.. ...+++++|+|.+ ++...++.|++|+...
T Consensus 247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 9999 4333333 3455899999999998887421 23433 3589999999977 8888899999998754
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=1.5e-16 Score=159.04 Aligned_cols=195 Identities=10% Similarity=-0.006 Sum_probs=132.1
Q ss_pred EEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154 166 AFSKVDISEKFSLFGGKG---------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 236 (430)
..++|+|++++|++++.+ +.+.+||+.+++... +..+ ...+...+| +|||+.|+.+. +
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~---------~~~~~~~~~--SPdG~~la~~~-~ 131 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERI---------PNNTQWVTW--SPVGHKLAYVW-N 131 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCC---------CTTEEEEEE--CSSTTCEEEEE-T
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccC---------CCcceeeEE--CCCCCEEEEEE-C
Confidence 357889999999988875 567799999887543 3322 256889999 99999999874 6
Q ss_pred CcEEEEECCCCCcceEEEeecCCCe-----------------EEEEecCCCCEEEEEeCCC-------------------
Q 014154 237 HQVRLYDTSAQRRPVMSFDFRETPI-----------------KAVAEEPDSFNIYIGNGSG------------------- 280 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~i-----------------~~~~~sp~~~~l~~~~~d~------------------- 280 (430)
+.|++||+.++.....+..++...+ ..+.|||||++|+.++.|.
T Consensus 132 ~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~ 211 (740)
T 4a5s_A 132 NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP 211 (740)
T ss_dssp TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence 8999999987653222222332222 3589999999999875321
Q ss_pred -----------------cEEEEEccC---C---eEEeeee------CCCCCCeEEEEecCCCCeEEEEeC----CCcEEE
Q 014154 281 -----------------DLASVDIRT---G---KLLGCFI------GKCSGSIRSIARHPTLPIIASCGL----DSYLRF 327 (430)
Q Consensus 281 -----------------~i~iwd~~~---~---~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~----dg~i~i 327 (430)
.|++||+.+ + +.. .+. ++ ...+..++|+|||++++.... +..|++
T Consensus 212 ~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~-~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~ 289 (740)
T 4a5s_A 212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIG-DHYLCDVTWATQERISLQWLRRIQNYSVMDI 289 (740)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTS-CEEEEEEEEEETTEEEEEEEESSTTEEEEEE
T ss_pred cceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCC-CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEE
Confidence 488899988 7 333 333 24 677999999999997665532 347999
Q ss_pred EECCCCc----ee--eEEEeeccccceE-----Eeeeccccccc-c-ccC-CCC--ceEecCCCC
Q 014154 328 WDIKTRQ----LL--SAVFLKQHLNEVV-----FDSAFADKEVA-N-AAA-DAP--MLEIQNGND 376 (430)
Q Consensus 328 wd~~~~~----~~--~~~~~~~~~~~~v-----~~~~~s~~g~~-~-~~~-~d~--~i~~~~~~~ 376 (430)
||+.+++ +. ..+...++ ...+ ..++|+|||+. + ..+ .+| .|.+|+.+.
T Consensus 290 ~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 290 CDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 9999887 22 22111333 2222 37899999986 4 343 444 456666554
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=1.3e-14 Score=127.84 Aligned_cols=227 Identities=12% Similarity=0.037 Sum_probs=160.0
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeee-----cCCCceEEEEEc-CCCCEEEEEeC-CCeEEEEECCCCeee
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVD-ISEKFSLFGGK-GVEVNVWDLDKCEKI 197 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-----~~~~~i~~~~~~-~~~~~l~~~~~-d~~i~~~d~~~~~~~ 197 (430)
.+++...++.+.+|+... ..+..+.. .+...+..++++ +++.++++... ++.|.+|| .+++.+
T Consensus 43 l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~ 112 (286)
T 1q7f_A 43 IIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFV 112 (286)
T ss_dssp EEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEE
T ss_pred EEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEE
Confidence 556667788888887431 12333321 122467889994 66666655533 78999999 566666
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCCCCEEEE
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~ 275 (430)
..+.... ...+..+++ +++++++++...++.|.+||... . .+..+. .+...+.+++++|+++++++
T Consensus 113 ~~~~~~~--------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 113 RKFGATI--------LQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEECTTT--------CSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEecCcc--------CCCceEEEE--eCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 6553321 145788999 88998888877889999999753 3 344443 23456899999999987777
Q ss_pred EeCCCcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCC-cEEEEECCCCceeeEEEeeccccceEEeee
Q 014154 276 GNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVFLKQHLNEVVFDSA 353 (430)
Q Consensus 276 ~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 353 (430)
...++.|++||. .++.+..+..+ +...+..++++++|.++++...++ .|.+||. +++.+..+..... ...+.+++
T Consensus 181 ~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~-~~~~~~i~ 257 (286)
T 1q7f_A 181 DNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK-HAQCFDVA 257 (286)
T ss_dssp EGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC-CSCEEEEE
T ss_pred ECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC-CCcceeEE
Confidence 778899999997 55666666542 125789999999999888887776 9999995 5677766533222 22357899
Q ss_pred ccccccccccCCCCceEecCCCC
Q 014154 354 FADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 354 ~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
++|+|.+++++.++.|++|+...
T Consensus 258 ~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 258 LMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EETTTEEEEEETTTEEEEEECSC
T ss_pred ECCCCcEEEECCCCeEEEEEccc
Confidence 99999984446789999998754
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=2e-14 Score=126.50 Aligned_cols=245 Identities=9% Similarity=0.107 Sum_probs=164.8
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-- 131 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-- 131 (430)
...+.+ .|+|+++++...++.|.+||.. ++.+..+..... ...+...+..+.+.+.. +.++.+..
T Consensus 32 p~~v~~--~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--~~~~~~~p~~i~~~~~~--------g~l~v~~~~~ 98 (286)
T 1q7f_A 32 PSGVAV--NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK--RDSQLLYPNRVAVVRNS--------GDIIVTERSP 98 (286)
T ss_dssp EEEEEE--CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS--STTCBSSEEEEEEETTT--------TEEEEEECGG
T ss_pred CceEEE--CCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC--CcccccCceEEEEEcCC--------CeEEEEcCCC
Confidence 344555 5778888888889999999975 655554432100 01112345555553332 34444442
Q ss_pred CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154 132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 132 ~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 211 (430)
++.+.+|+.. ...+..+.......+..++++++++++++...++.|.+||.. ++.+..+....
T Consensus 99 ~~~i~~~d~~---------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~------- 161 (286)
T 1q7f_A 99 THQIQIYNQY---------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK------- 161 (286)
T ss_dssp GCEEEEECTT---------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------
T ss_pred CCEEEEECCC---------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC-------
Confidence 6777777621 113344433344578899999999988877788899999964 45554443211
Q ss_pred CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCC-cEEEEEcc
Q 014154 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSG-DLASVDIR 288 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~ 288 (430)
+...+..+++ +++++++++...++.|++||... . .+..+..+ ...+..++++|+|+++++...++ .|.+||.
T Consensus 162 ~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~- 236 (286)
T 1q7f_A 162 HLEFPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ- 236 (286)
T ss_dssp TCSSEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred ccCCcEEEEE--CCCCCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-
Confidence 1145788999 88898888877899999999864 3 34555433 25789999999998888887776 9999995
Q ss_pred CCeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154 289 TGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 289 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~ 334 (430)
+++.+..+..+. ...+.+++++|+|.++++ +.|+.|++|++....
T Consensus 237 ~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 237 DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 566666666541 234789999999987766 679999999986543
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=3.7e-15 Score=147.35 Aligned_cols=194 Identities=15% Similarity=0.008 Sum_probs=132.8
Q ss_pred CceEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------CeeeEeeC-CCCCCCCCCcCCcceeEEEEeecC
Q 014154 163 GTIAFSKVDISEKFSLFGGKG----------VEVNVWDLDK------CEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
..+..++|+|+++.|++++.+ ..|++||+.+ +... .+. .+ ...+..++| +|
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~---------~~~~~~~~~--Sp 197 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA---------HRFVTGPRL--SP 197 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC---------SSEECCCEE--CT
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecC---------CCcccCceE--CC
Confidence 456678999999999988876 5899999987 4433 333 22 156778889 89
Q ss_pred CCCEEEEEeCC--------CcEEEEECC-CCC--cceEEEeecCCCeEEEEecCCCCEEEEEeCCC--cEEEEEccCCeE
Q 014154 226 DHRKFVAGTND--------HQVRLYDTS-AQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKL 292 (430)
Q Consensus 226 ~~~~l~s~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~ 292 (430)
||++|+.++.+ ..|++||+. ++. ........|...+..+.|+|||++++++..++ .|.+||+.+++.
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 99999987755 379999998 441 33444445578899999999999888888888 677777767776
Q ss_pred EeeeeCCCCCC--------eEEEEecCCCCeEEEEeCCCcEEEE--ECCCCceeeEEEeeccccceEEee-eccccccc-
Q 014154 293 LGCFIGKCSGS--------IRSIARHPTLPIIASCGLDSYLRFW--DIKTRQLLSAVFLKQHLNEVVFDS-AFADKEVA- 360 (430)
Q Consensus 293 ~~~~~~~~~~~--------v~~i~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~- 360 (430)
......+ ... +..++|+|++.++++++. +.++|| |+.+++ +.. +..+ ...+..+ +++++..+
T Consensus 278 ~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~--l~~~-~~~~~~~~s~~~~~~~~ 351 (662)
T 3azo_A 278 TQLCRRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD--AAGP-WTEWAATLTVSGTRAVG 351 (662)
T ss_dssp EESSCCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE--CCSS-CCEEEEEEEEETTEEEE
T ss_pred eeccccc-ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE--ecCC-CCeEEEEEecCCCEEEE
Confidence 5444432 222 567899999999999998 999999 655555 444 4444 3334555 44433333
Q ss_pred cccCCCCceEecCC
Q 014154 361 NAAADAPMLEIQNG 374 (430)
Q Consensus 361 ~~~~~d~~i~~~~~ 374 (430)
++++.+....+|..
T Consensus 352 ~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 352 VAASPRTAYEVVEL 365 (662)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEcCCCCCCEEEEE
Confidence 44455554455543
No 171
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=9.6e-14 Score=124.66 Aligned_cols=269 Identities=8% Similarity=-0.022 Sum_probs=174.9
Q ss_pred cCCCceEEEEccCCCCCcceeeeecC----CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 21 DSLGLIKVIEARGEHGGVPKVVERWG----DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 21 ~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
..++.|.+||..++ ++...+. ...-......+.++ ++.++++...++.|.+||..+++.+..+...
T Consensus 14 ~~~~~l~~~d~~t~-----~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-- 83 (328)
T 3dsm_A 14 YSNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-- 83 (328)
T ss_dssp SCCBEEEEEETTTT-----EEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEEECC--
T ss_pred CCCceEEEEECCCC-----EEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEcCCC--
Confidence 34899999999987 5544331 11111112233332 2345566667899999999999987777431
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC----CceEEEEEcC
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVDI 172 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~----~~i~~~~~~~ 172 (430)
.....+.+.+.. ..+++...++.+.+++..... .+..+..... .....+++
T Consensus 84 -------~~p~~i~~~~~g--------~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~-- 138 (328)
T 3dsm_A 84 -------TSPRYIHFLSDE--------KAYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ-- 138 (328)
T ss_dssp -------SSEEEEEEEETT--------EEEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE--
T ss_pred -------CCCcEEEEeCCC--------eEEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE--
Confidence 244445543321 133444367888888754221 2223333220 14556677
Q ss_pred CCCEEEEEe--CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----------CcEE
Q 014154 173 SEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVR 240 (430)
Q Consensus 173 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~ 240 (430)
++..|+++. .++.|.++|+.+++.+..+... .....+++ ++++++++++..+ +.|.
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------~~p~~i~~--~~dG~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG----------IQPTSLVM--DKYNKMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS----------SCBCCCEE--CTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----------CCccceEE--cCCCCEEEEECCCccCCccccCCceEE
Confidence 355555555 4889999999999887766542 23466788 8889877776554 7899
Q ss_pred EEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee--eeCCCCCCeEEEEecC-CCCeE
Q 014154 241 LYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP-TLPII 316 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~-~~~~l 316 (430)
++|..+++ ....+... ......++|+|++++|+++.. .|.+||+.+++.... +... ......++++| ++.++
T Consensus 207 ~id~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~ly 282 (328)
T 3dsm_A 207 RIDAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVY 282 (328)
T ss_dssp EEETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEE
T ss_pred EEECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEE
Confidence 99998755 34455432 236899999999999988765 899999988876421 2221 35689999999 45555
Q ss_pred EEE----eCCCcEEEEECCCCceeeEEEe
Q 014154 317 ASC----GLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 317 ~s~----~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
++. ..++.|.+||.. ++.+.++..
T Consensus 283 va~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 283 VADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 555 578899999998 999888654
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=8.8e-16 Score=141.79 Aligned_cols=268 Identities=10% Similarity=0.013 Sum_probs=162.8
Q ss_pred CCCCceeEEeecC---CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEE
Q 014154 62 SQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 62 ~p~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~ 138 (430)
+|||++|+..... ..|.+||+.+++........ ........|.... ..++....++.+.+|
T Consensus 44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~---------~~~~~~~~~spdg-------~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 44 TQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK---------GDNTFGGFISTDE-------RAFFYVKNELNLMKV 107 (396)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS---------CBCTTTCEECTTS-------SEEEEEETTTEEEEE
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC---------CCccccceECCCC-------CEEEEEEcCCcEEEE
Confidence 8899998876443 46888898777643322211 0111001233332 466666677777777
Q ss_pred EeeecCccccCCCcceEEeeecCCCceEE-------------------EEEcCCCCEEEEE-----eCCCeEEEEECCCC
Q 014154 139 SIEVTKVSAESSCSTVKSWNVCASGTIAF-------------------SKVDISEKFSLFG-----GKGVEVNVWDLDKC 194 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~i~~~d~~~~ 194 (430)
++.... ...+.... ...... +.++|+++.++.. ..+..|++||+.++
T Consensus 108 d~~~~~--------~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 108 DLETLE--------EQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp ETTTCC--------EEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred ECCCCC--------cEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 754221 11222211 111111 3467777776654 35668999999887
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC------CcEEEEECCCCCcceEEEeec--CCCeEEEE
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFR--ETPIKAVA 265 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~~i~~~~ 265 (430)
+....... ...+..+.| +| ++..|+..+.+ ..|.+||+..+. ...+..+ ...+..++
T Consensus 179 ~~~~~~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 179 ELEVIHQD----------TAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEE
T ss_pred cEEeeccC----------CcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceE
Confidence 65443321 145788889 78 78777766653 368889987643 2333333 23578899
Q ss_pred ecCCCCEEEEEeCC-----CcEEEEEccCCeEEeeeeCCCCCCeEEEEecC-CCCeEEEEe----------------CCC
Q 014154 266 EEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCG----------------LDS 323 (430)
Q Consensus 266 ~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~----------------~dg 323 (430)
|+|+|++|+.++.+ +.|++||+.+++....... . ... +.|+| +|+++++++ .+.
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 99999988777544 4499999998876443322 1 233 88999 999888765 347
Q ss_pred cEEEEECCCCceeeEEEeeccccc----------eEEeeeccccccc-cc-cCCCCceEecCCC
Q 014154 324 YLRFWDIKTRQLLSAVFLKQHLNE----------VVFDSAFADKEVA-NA-AADAPMLEIQNGN 375 (430)
Q Consensus 324 ~i~iwd~~~~~~~~~~~~~~~~~~----------~v~~~~~s~~g~~-~~-~~~d~~i~~~~~~ 375 (430)
.|++||+.+++... +..+... .+..++|+|||+. ++ +..++...+|..+
T Consensus 321 ~i~~~d~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 321 FLYVLNTKAKSAQK---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEEEEETTTTBCCE---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cEEEEecccCceEE---ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 89999998877543 2223221 1467899999986 44 3446666676554
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=3.3e-14 Score=129.36 Aligned_cols=269 Identities=11% Similarity=0.072 Sum_probs=172.1
Q ss_pred CCCceeEEee------cCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154 63 QNDPLLAVAR------KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 63 p~g~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
|+++++++.. .|+.|.+||..+++.+..+... ... .+.+.+.. ..+.++.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g---------~~p-~i~~spdg--------~~lyv~~~~~~~~ 74 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA---------FNG-HVQVSNDG--------KKIYTMTTYHERI 74 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC---------EEE-EEEECTTS--------SEEEEEEEEETTS
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC---------CCC-ceEECCCC--------CEEEEEEeccccc
Confidence 3455555543 4789999999999877665531 112 45554433 2555443
Q ss_pred ----cCCeeEEEEeeecCccccCCCcceEEeeec-----CCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEe
Q 014154 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC-----ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT 199 (430)
Q Consensus 131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~ 199 (430)
.++.+.+|++.... .+...... ++.....++++|++++|+++.. ++.|.+||+.+++.+..
T Consensus 75 ~~g~~~~~v~v~d~~t~~--------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 75 TRGKRSDVVEVWDADKLT--------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp SSSCEEEEEEEEETTTCC--------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred ccCCCCCEEEEEECcCCc--------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 24568888754221 23333322 2345667999999999998864 57999999999988776
Q ss_pred -eCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEE------eecCCCeEEEEecCCCC
Q 014154 200 -AKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSF------DFRETPIKAVAEEPDSF 271 (430)
Q Consensus 200 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~sp~~~ 271 (430)
+.... ...+.+ .|++ ..+++.+.||.+.+|++.......... ..+..++ .+.++|++.
T Consensus 147 ~i~~~~-----------~~~v~~--~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 212 (361)
T 2oiz_A 147 VTAAAG-----------CWSVIP--QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD 212 (361)
T ss_dssp EGGGTT-----------EEEEEE--CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred EecCCC-----------cceeEE--cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence 54321 122344 3443 678888999999999987533322111 1112222 334467787
Q ss_pred EEEEEeCCCcEEEEEccCCeE--EeeeeCC---------CCCCeEEEEecCCCCeEEEEeC-----------CCcEEEEE
Q 014154 272 NIYIGNGSGDLASVDIRTGKL--LGCFIGK---------CSGSIRSIARHPTLPIIASCGL-----------DSYLRFWD 329 (430)
Q Consensus 272 ~l~~~~~d~~i~iwd~~~~~~--~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~-----------dg~i~iwd 329 (430)
.++..+.++.|.++|+..... +..+... .......++|+|++..++++.. .+.|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 888888899999999975432 2222110 0011223789999888776643 34899999
Q ss_pred CCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154 330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT 377 (430)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~ 377 (430)
+.+++.+.++. .+. ..+++|+|||++ ++++. +.|.+||....
T Consensus 293 ~~t~~~v~~i~--~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 293 TKTKQRVARIP--GRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTTEEEEEEE--CTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCcEEEEEe--cCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99999999853 342 689999999998 44444 99999987664
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=1.6e-14 Score=133.01 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=138.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE---------
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--------- 233 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--------- 233 (430)
..+..+.|+|+++.|++++.++.|++||+.+++.......+. ..+....|..++++.+++..
T Consensus 81 ~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 81 DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA---------EWVGYGTWVANSDCTKLVGIEIRREDWVP 151 (388)
T ss_dssp BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------TEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechh---------hcccccceeECCCCCeeccccccCccccc
Confidence 344467899999999999999999999999887665444332 34444444447899888743
Q ss_pred -------------eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCC------CcEEEEEccCCeEE
Q 014154 234 -------------TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGS------GDLASVDIRTGKLL 293 (430)
Q Consensus 234 -------------~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d------~~i~iwd~~~~~~~ 293 (430)
..+..|.+||+.+++ ...+..+...+..+.|+| +++.|+....+ ..|.++|+..+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred ccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 234689999999865 445555667899999999 99988877753 37888888665543
Q ss_pred eeeeCCCC-CCeEEEEecCCCCeEEEEeCC-C----cEEEEECCCCceeeEEEeeccccce---EEeeeccccccc-ccc
Q 014154 294 GCFIGKCS-GSIRSIARHPTLPIIASCGLD-S----YLRFWDIKTRQLLSAVFLKQHLNEV---VFDSAFADKEVA-NAA 363 (430)
Q Consensus 294 ~~~~~~~~-~~v~~i~~~~~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~-~~~ 363 (430)
.+..+.. ..+..+.|+|||+.|+..+.+ + .|++||+.+++......+.++ ... ...++|+|||+. ++.
T Consensus 230 -~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 230 -KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp -ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSSEEEEEECCC---
T ss_pred -EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCCeEccCCCcceeE
Confidence 3433312 357889999999977665432 2 399999999886443223331 111 123479999997 432
Q ss_pred ---------CCCCceEecCCCCC
Q 014154 364 ---------ADAPMLEIQNGNDT 377 (430)
Q Consensus 364 ---------~~d~~i~~~~~~~~ 377 (430)
..+..|.+|+....
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp ---------CCCCEEEEEETTTT
T ss_pred eeeccccccCCCCEEEEEeccCC
Confidence 45678999988753
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=4e-14 Score=127.30 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=153.5
Q ss_pred CceEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeE
Q 014154 163 GTIAFSKVDISEKFSLFGGKG------------------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS 218 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 218 (430)
+.+.+++++|+++++++...+ +.|.+||..+++.+..+.... ...+..
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--------~~~p~g 95 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL--------FYLPHG 95 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT--------CSSEEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc--------cCCceE
Confidence 578999999999999887777 479999998888776554211 145788
Q ss_pred EEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe---------ecCCCeEEEEecC-CCCEEEEEe-CCCcEEEEEc
Q 014154 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---------FRETPIKAVAEEP-DSFNIYIGN-GSGDLASVDI 287 (430)
Q Consensus 219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~sp-~~~~l~~~~-~d~~i~iwd~ 287 (430)
+++ +++++++++...++.|++||.......+..+. .+-.....++++| ++.++++.+ .++.|++||
T Consensus 96 ia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 96 LSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp EEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred EEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 999 89999888888899999999875422355552 3334688999999 787777776 689999999
Q ss_pred cCCeEEeeeeCC---------CCCCeEEEEecCC-CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc-
Q 014154 288 RTGKLLGCFIGK---------CSGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD- 356 (430)
Q Consensus 288 ~~~~~~~~~~~~---------~~~~v~~i~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~- 356 (430)
.+++.+..+... +-.....++++|+ +.++++...++.|++||..+++.+..+....+ ...+.+++|+|
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~pg 251 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-GRNVFAISYIPG 251 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-TTCEEEEEEETT
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-CCCcceeeecCC
Confidence 577777666422 0234899999998 77777778889999999998998887543334 34467888888
Q ss_pred -----cccc-cccCCCCceEecCCCC
Q 014154 357 -----KEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 357 -----~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+|.. ++...+..+.+|+...
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 7766 6666777899998654
No 176
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=5.8e-14 Score=126.09 Aligned_cols=269 Identities=9% Similarity=-0.018 Sum_probs=178.6
Q ss_pred ecCCeEEEecCCCCcccceeec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCC
Q 014154 72 RKNGLTDILNPLNGDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS 150 (430)
Q Consensus 72 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 150 (430)
+.++.|.++|..+++....+.. ... .+-.+....+.+. .. ..+++...++.+.+++.....
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~---~~lg~~~~~i~~~-~~--------~lyv~~~~~~~v~viD~~t~~------ 75 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANG---FKLGDVAQSMVIR-DG--------IGWIVVNNSHVIFAIDINTFK------ 75 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHS---SCCBSCEEEEEEE-TT--------EEEEEEGGGTEEEEEETTTCC------
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcC---cccCccceEEEEE-CC--------EEEEEEcCCCEEEEEECcccE------
Confidence 3489999999998886654421 000 0111233445442 22 356666677889998865322
Q ss_pred CcceEEeeecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (430)
Q Consensus 151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (430)
.+..+ ........+++++++ .++++. .++.|.+||+.+++....+...... ........+++ ++..
T Consensus 76 --~~~~i--~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----~~~~~p~~i~~----~~~~ 142 (328)
T 3dsm_A 76 --EVGRI--TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMD----MESGSTEQMVQ----YGKY 142 (328)
T ss_dssp --EEEEE--ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCC----TTTCBCCCEEE----ETTE
T ss_pred --EEEEc--CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcc----ccCCCcceEEE----ECCE
Confidence 33333 335678899998888 455555 7899999999998877665432200 00013556666 2344
Q ss_pred EEEEe--CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC----------CcEEEEEccCCeEEeeee
Q 014154 230 FVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 230 l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~ 297 (430)
|+++. .++.|.+||+.+++ .+..+... .....++++|+|+++++...+ +.|.+||..+++....+.
T Consensus 143 lyv~~~~~~~~v~viD~~t~~-~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDK-VVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTE-EEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCEEEEEECCCCe-EEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 44444 48899999999865 35555543 345788999999877766554 789999999999887776
Q ss_pred CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc-cccc-ccc----CCCCceEe
Q 014154 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NAA----ADAPMLEI 371 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~-~~~----~~d~~i~~ 371 (430)
.........++|+|++.+|+++.. .|.+||+.+++......+... ......++++| ++.+ ++. ..++.|.+
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 431236899999999998888755 899999998876432112211 23468899999 5555 665 57899999
Q ss_pred cCCCC
Q 014154 372 QNGND 376 (430)
Q Consensus 372 ~~~~~ 376 (430)
|+...
T Consensus 298 ~d~~g 302 (328)
T 3dsm_A 298 YSPQG 302 (328)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 99873
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=1.6e-12 Score=124.53 Aligned_cols=316 Identities=12% Similarity=0.107 Sum_probs=203.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC--CCcccceee
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAIS 92 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~--~~~~~~~~~ 92 (430)
..+++...+++|.++|..++ +++.++..... ...+.+ +|||++|++++.++.|.+||+. +++.+..+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-----~v~~~i~~g~~---p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGYA---VHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-----CEEEEEECSSC---EEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCC-----eEEEEEeCCCC---ccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 45667778899999999987 67766653322 223445 7899999999999999999995 676666554
Q ss_pred ccCCCCCCCCCCceEEEEEee---cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC--------
Q 014154 93 NAGDSGAQPEDDGIVGLHLFK---RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-------- 161 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-------- 161 (430)
. ......+.+.+ .+. +-.+++....+.+.|++..... .+....+..
T Consensus 238 ~---------G~~P~~ia~s~~~~pDG------k~l~v~n~~~~~v~ViD~~t~~--------~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 238 I---------GSEARSIETSKMEGWED------KYAIAGAYWPPQYVIMDGETLE--------PKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp C---------CSEEEEEEECCSTTCTT------TEEEEEEEETTEEEEEETTTCC--------EEEEEECCEECTTTCCE
T ss_pred c---------CCCCceeEEccccCCCC------CEEEEEEccCCeEEEEECCCCc--------EEEEEeccccccccccc
Confidence 3 12334556652 122 0244455566888888743221 333322210
Q ss_pred --CCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-C
Q 014154 162 --SGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N 235 (430)
Q Consensus 162 --~~~i~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~ 235 (430)
...+..+..++++..+ +.....|.|.++|..+.... ..+... .....+.| +|++++|+++. .
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~----------~~~~d~~~--~pdgr~~~va~~~ 362 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE----------RFLHDGGL--DGSHRYFITAANA 362 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC----------SSEEEEEE--CTTSCEEEEEEGG
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc----------ccccCceE--CCCCCEEEEEeCC
Confidence 1256778888876554 44556799999999765322 222111 34667788 89999887765 5
Q ss_pred CCcEEEEECCCCCcceEEEee-----cCCCeEEEEecCCCCEEE-EEe-CCCcEEEEEccC-------CeEEeeeeCCCC
Q 014154 236 DHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEPDSFNIY-IGN-GSGDLASVDIRT-------GKLLGCFIGKCS 301 (430)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~sp~~~~l~-~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~ 301 (430)
++.|.++|+.+++ .+..+.. |.+.-..+ ++|++..++ ++. .++.|.++|..+ .+.+.++... .
T Consensus 363 sn~V~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g 439 (567)
T 1qks_A 363 RNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-G 439 (567)
T ss_dssp GTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-C
T ss_pred CCeEEEEECCCCc-EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-C
Confidence 7899999999865 3444443 22211122 588755554 443 468999999987 6778888764 3
Q ss_pred CCeEEEEecCCCCeEEEEeC-------CCcEEEEECCCC-----cee-eEEEee-----ccccceEEeeeccccccc--c
Q 014154 302 GSIRSIARHPTLPIIASCGL-------DSYLRFWDIKTR-----QLL-SAVFLK-----QHLNEVVFDSAFADKEVA--N 361 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~-------dg~i~iwd~~~~-----~~~-~~~~~~-----~~~~~~v~~~~~s~~g~~--~ 361 (430)
..-..+..+|++++|.+... .++|.|||+.+. ... ..+... +.....+..+.|+|+|+. +
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF 519 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence 34455789999999888763 358999999877 211 222110 011345789999999987 3
Q ss_pred cc-C---CCCceEecCCCCCc
Q 014154 362 AA-A---DAPMLEIQNGNDTQ 378 (430)
Q Consensus 362 ~~-~---~d~~i~~~~~~~~~ 378 (430)
+. + .++.|.|+|.....
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTE
T ss_pred EeecCCCCCCcEEEEECCCce
Confidence 32 1 47999998877643
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=5.7e-13 Score=116.17 Aligned_cols=241 Identities=7% Similarity=-0.039 Sum_probs=167.1
Q ss_pred CCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCC-CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154 12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 12 ~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
.|...+++++.++.|.+||..++ +.+-++..+. ..+.. ... .|+|++|+ +.++.|..||. +|+.+..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG-----~~~w~~~~~~~~~~~~--~~~--~pdG~ilv--s~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK-----EIVWEYPLEKGWECNS--VAA--TKAGEILF--SYSKGAKMITR-DGRELWN 70 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT-----EEEEEEECCTTCCCCE--EEE--CTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCC-----eEEEEeCCCccCCCcC--eEE--CCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence 45677899999999999999777 7777776654 23333 334 67888887 34677888887 6664443
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
+.. .....+.++.+
T Consensus 71 ~~~------------------------------------------------------------------~~~~~~~~~~~ 84 (276)
T 3no2_A 71 IAA------------------------------------------------------------------PAGCEMQTARI 84 (276)
T ss_dssp EEC------------------------------------------------------------------CTTCEEEEEEE
T ss_pred EcC------------------------------------------------------------------CCCccccccEE
Confidence 321 00123445667
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154 171 DISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR 249 (430)
Q Consensus 171 ~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 249 (430)
.++++++++.+. ++.|..+|. +++.++++....... .+......+++ .++++++++...++.|..||.. ++.
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~---~~~~~~~~v~~--~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE---RPHAQFRQINK--NKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS---SGGGSCSCCEE--CTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC---cccccccCceE--CCCCCEEEEecCCCEEEEECCC-CCE
Confidence 788888888776 777777775 677766654321100 01123445566 7899999999999999999998 664
Q ss_pred ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC-----CCCeEEEEecCCCCeEEEEeCC--
Q 014154 250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHPTLPIIASCGLD-- 322 (430)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~s~~~d-- 322 (430)
+..+..+ ....++.+.++++++++++.++.|..+|..+++.+.++.... -..+..+...++|.++++....
T Consensus 158 -~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~ 235 (276)
T 3no2_A 158 -LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHD 235 (276)
T ss_dssp -EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTC
T ss_pred -EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcc
Confidence 6666654 456677888999999999888899999999999999886431 1237888899999988877421
Q ss_pred ------CcEEEEEC-CCCceeeEE
Q 014154 323 ------SYLRFWDI-KTRQLLSAV 339 (430)
Q Consensus 323 ------g~i~iwd~-~~~~~~~~~ 339 (430)
+..+++.+ .+++.+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 236 REAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp TTGGGSCCCSEEEECTTSBEEEEE
T ss_pred ccccccCCceEEEECCCCCEEEEe
Confidence 23356665 567777764
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=1.7e-11 Score=108.15 Aligned_cols=276 Identities=7% Similarity=0.016 Sum_probs=175.8
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
..++.. .|+|+++++...++.|.+||.. ++. ..+... .....+.++.+-+ .. ..+++...++
T Consensus 17 ~~~i~~--d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~------~~~~~~~~i~~~~-~g-------~l~v~~~~~~ 78 (299)
T 2z2n_A 17 PYGITV--SDKGKVWITQHKANMISCINLD-GKI-TEYPLP------TPDAKVMCLTISS-DG-------EVWFTENAAN 78 (299)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-CCE-EEEECS------STTCCEEEEEECT-TS-------CEEEEETTTT
T ss_pred ccceEE--CCCCCEEEEecCCCcEEEEcCC-CCe-EEecCC------cccCceeeEEECC-CC-------CEEEeCCCCC
Confidence 445555 5678766666667899999987 543 222210 0123454444432 21 2444444466
Q ss_pred eeEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
.+..++.. +.+..+... ....+..+++++++.++++...++.|.+||. +++........ .
T Consensus 79 ~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~--------~ 139 (299)
T 2z2n_A 79 KIGRITKK----------GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN--------K 139 (299)
T ss_dssp EEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------T
T ss_pred eEEEECCC----------CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------C
Confidence 67666532 234444432 3457889999999988887777889999998 54433221110 0
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
...+..+++ .+++.++++...++.|..||. ++......+..+...+.+++++++++++++...++.|.+||. +++.
T Consensus 140 ~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 140 GSYPSFITL--GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp TCCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCCCceEEE--cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 145788888 788888777767789999999 544211112333456889999999987776666889999999 7665
Q ss_pred Eee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEe
Q 014154 293 LGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 293 ~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~ 371 (430)
... +..+ ...+.+++++++|.++++...++.|.+||. +++ +..+.+..+ ...+.++++ ++|.+..+...+.+..
T Consensus 216 ~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 216 TEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIK-SAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp EEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSS-SCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred EEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCC-CCccceEEe-cCCCEEEEecCCcEEE
Confidence 332 2223 467899999999987666657789999998 454 333323333 234688899 8998844433566666
Q ss_pred cCCC
Q 014154 372 QNGN 375 (430)
Q Consensus 372 ~~~~ 375 (430)
++..
T Consensus 291 ~~~~ 294 (299)
T 2z2n_A 291 LTLI 294 (299)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6543
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=1.8e-12 Score=124.12 Aligned_cols=290 Identities=13% Similarity=0.082 Sum_probs=187.5
Q ss_pred ceeeecCCCceEEEEcc--CCCCCcceeeeecCCCCCCcceeeeeecCC----CCCceeEEee-cCCeEEEecCCCCccc
Q 014154 16 RALTFDSLGLIKVIEAR--GEHGGVPKVVERWGDPHSSNCVLAASIDDS----QNDPLLAVAR-KNGLTDILNPLNGDLR 88 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~g~~l~~g~-~dg~i~iwd~~~~~~~ 88 (430)
.+++++.||.|.+||+. +. +.+.++..... ...+.+ + |||++++++. .+++|.|+|..+.+++
T Consensus 210 ~lyv~~~dg~V~viD~~~~t~-----~~v~~i~~G~~---P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 210 YLFVIGRDGKVNMIDLWMKEP-----TTVAEIKIGSE---ARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp EEEEEETTSEEEEEETTSSSC-----CEEEEEECCSE---EEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred EEEEEcCCCeEEEEECCCCCC-----cEeEEEecCCC---CceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence 56778889999999995 44 45555543322 234444 5 6899888865 4599999999888887
Q ss_pred ceeeccC--CCCCCCC-CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154 89 VAISNAG--DSGAQPE-DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 89 ~~~~~~~--~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
..+.... ......+ ...+..+...+... ..++.....|.+.+.+.... ..+.+..+......
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-------~~vv~~~~~g~v~~vd~~~~--------~~~~v~~i~~~~~~ 344 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRP-------EFIVNVKETGKILLVDYTDL--------NNLKTTEISAERFL 344 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSS-------EEEEEETTTTEEEEEETTCS--------SEEEEEEEECCSSE
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCC-------EEEEEecCCCeEEEEecCCC--------ccceeeeeeccccc
Confidence 7765311 0000001 11344444433322 34555556677777664321 13344444556678
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCC-CCCCCCCCcCCcceeEEEEeecCCCC-EEEEEe-CCCcEEE
Q 014154 166 AFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP-PPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGT-NDHQVRL 241 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~-~dg~i~i 241 (430)
..+.|+|++++++++. .++.|.++|+.+++.+..+.. .. ..|+. ..+.|. +|++. ..+++. .++.|.+
T Consensus 345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~-----~Phpg--~g~~~~-~p~~g~v~~t~~~g~~~Vsv 416 (567)
T 1qks_A 345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-----TPHPG--RGANFV-HPTFGPVWATSHMGDDSVAL 416 (567)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-----SBCCT--TCEEEE-ETTTEEEEEEEBSSSSEEEE
T ss_pred cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc-----CCCCc--cceeeE-CCCCCcEEEeCCCCCCeEEE
Confidence 8899999999987765 578999999999987766543 21 12222 122332 67644 444543 4689999
Q ss_pred EECCCC------CcceEEEeecCCCeEEEEecCCCCEEEEEeC-------CCcEEEEEccCC-----eE-Eeeee-----
Q 014154 242 YDTSAQ------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRTG-----KL-LGCFI----- 297 (430)
Q Consensus 242 wd~~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~-----~~-~~~~~----- 297 (430)
+|.... .+.+..+......-..+..+|++++|++... .+.|.+||+.+. .. ...+.
T Consensus 417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 999862 2346666654334355788999999998763 358999999876 21 12221
Q ss_pred ---CCCCCCeEEEEecCCCCeEEEEe-----CCCcEEEEECCCCceeeEE
Q 014154 298 ---GKCSGSIRSIARHPTLPIIASCG-----LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 298 ---~~~~~~v~~i~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~ 339 (430)
.. ...+..+.|+|+|+++..+. .++.|.|+|.++++++.++
T Consensus 497 ~~~~~-~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 497 GITEG-QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp TCCSS-CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred ccCCC-CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 11 35789999999999877663 3789999999999998874
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=7.5e-13 Score=119.15 Aligned_cols=257 Identities=10% Similarity=0.007 Sum_probs=164.4
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|++..++..+.++.++.| .++....+... ...+.++.+ .... ..++++..++.+.+|+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~-~~~g-------~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 14 SGKSNSAVPIISESELQTI---TAEPWLEISKK--------GLQLEGLNF-DRQG-------QLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CGGGGCSSCCCCGGGSCEE---ECEEEEEEESS--------CCCEEEEEE-CTTS-------CEEEEETTTCEEEEECTT
T ss_pred cCCccceeEEeecccCccc---ccceeEEEecc--------CccccCcEE-CCCC-------CEEEEECCCCEEEEEeCC
Confidence 5556667777778889999 23333333321 123444444 3222 344567778888888643
Q ss_pred ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCccee
Q 014154 142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
. +.+..+.......+.+++++++++++++...+ +.|.+||..++.....+.... ....+.
T Consensus 75 ~---------~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~ 138 (333)
T 2dg1_A 75 T---------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-------TAYCID 138 (333)
T ss_dssp T---------CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-------SCCCEE
T ss_pred C---------CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc-------cCCccc
Confidence 2 23444433455779999999999888776666 689999998766543332111 114588
Q ss_pred EEEEeecCCCCEEEEEeC------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccC-
Q 014154 218 SAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRT- 289 (430)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~- 289 (430)
.+++ +|++.++++... .+.|..||..++. +..+..+...+..++|+|+++.|+++ +.++.|.+||+.+
T Consensus 139 ~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 139 DMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp EEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ceEE--CCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 8999 889987776653 3567777766433 23333333467899999999866554 4578999999964
Q ss_pred CeEEee--------eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc---cceEEeeeccccc
Q 014154 290 GKLLGC--------FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL---NEVVFDSAFADKE 358 (430)
Q Consensus 290 ~~~~~~--------~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g 358 (430)
+..+.. +.+ ...+..++++++|.++++...++.|.+||. +++.+..+...... ...+.+++|+||+
T Consensus 215 g~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 215 GVTIQPFGATIPYYFTG--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SSSEEEEEEEEEEECCS--SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CcCcccccceEEEecCC--CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 332211 112 136788999999998888778899999998 56766664332110 0146889999997
Q ss_pred cc
Q 014154 359 VA 360 (430)
Q Consensus 359 ~~ 360 (430)
..
T Consensus 292 ~~ 293 (333)
T 2dg1_A 292 NQ 293 (333)
T ss_dssp CE
T ss_pred CE
Confidence 54
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.9e-13 Score=134.73 Aligned_cols=198 Identities=11% Similarity=0.030 Sum_probs=136.6
Q ss_pred EEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCC
Q 014154 166 AFSKVDISEKFSLFGGKGVE----------------VNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH 227 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~----------------i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (430)
..++|+|+++.|+.++.++. |++|++.++... ..+.... +...+..+.| +|++
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-------~~~~~~~~~~--SpDg 244 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-------EPKWMGGAEL--SDDG 244 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTS
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC-------CCeEEEEEEE--cCCC
Confidence 34677888888877776655 999999876521 2222211 1245678888 8999
Q ss_pred CEEEEEeC-----CCcEEEEECCC------CCcceEEEeecCCCeEEEEecCCCCEEEEEeCC----CcEEEEEccCCeE
Q 014154 228 RKFVAGTN-----DHQVRLYDTSA------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTGKL 292 (430)
Q Consensus 228 ~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~ 292 (430)
++|+.++. +..|++||+.+ +......+..+...+.. .|+|+|..|+..+.. +.|.+||+.++..
T Consensus 245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 99888765 56899999976 43235666666666655 488999888777653 3599999987742
Q ss_pred --EeeeeCCCC-CCeEEEEecCCCCeEEEEeCCCc--EEEEECCCCceeeEEEeeccccceEEeeeccccccc-c----c
Q 014154 293 --LGCFIGKCS-GSIRSIARHPTLPIIASCGLDSY--LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N----A 362 (430)
Q Consensus 293 --~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~----~ 362 (430)
...+..+.. ..+..+.|++++.++++...|+. |++|++.+++.+..+ ..+ ...+..++++|++.. + +
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l--~~~-~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF--PLE-VGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE--CCC-SSEEEEEECCTTCSEEEEEEEC
T ss_pred ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec--CCC-CceEEEEecCCCCCEEEEEEeC
Confidence 234444423 36888999988888888888884 667787778876663 344 455688999999864 3 2
Q ss_pred cCCCCceEecCCCC
Q 014154 363 AADAPMLEIQNGND 376 (430)
Q Consensus 363 ~~~d~~i~~~~~~~ 376 (430)
....+.+..|+...
T Consensus 401 ~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 401 FLSPGIIYHCDLTK 414 (710)
T ss_dssp SSCCCEEEEEETTS
T ss_pred CCCCCEEEEEECCC
Confidence 33567889998765
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.60 E-value=3.2e-13 Score=117.79 Aligned_cols=214 Identities=9% Similarity=0.082 Sum_probs=161.3
Q ss_pred CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC--CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
...+++++.++.+.+|+.+.. .+ +|..... ..+.++.++|++++|+ +.++.|..||. +++.++++
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG---------~~-~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK---------EI-VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT---------EE-EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCC---------eE-EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence 357888888999999985322 22 4665544 3688999999999888 45778999999 89999988
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCCCEE
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNI 273 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l 273 (430)
..... ..+.++.+ .++++++++.+. ++.|..+|.. ++ .+..+... ......+++.++|+++
T Consensus 72 ~~~~~--------~~~~~~~~--~~dG~~lv~~~~~~~~v~~vd~~-Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 72 AAPAG--------CEMQTARI--LPDGNALVAWCGHPSTILEVNMK-GE-VLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp ECCTT--------CEEEEEEE--CTTSCEEEEEESTTEEEEEECTT-SC-EEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred cCCCC--------ccccccEE--CCCCCEEEEecCCCCEEEEEeCC-CC-EEEEEeccCCCCcccccccCceECCCCCEE
Confidence 76321 34677788 789999999887 7888888864 34 34444421 1234566788999999
Q ss_pred EEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec---cccceEE
Q 014154 274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ---HLNEVVF 350 (430)
Q Consensus 274 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~ 350 (430)
++...++.|..||.. |+.+.++... ..+.++.+.+++.++++++.++.|..+|..+|+.+.++.-.. ..-..+.
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~ 216 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVA 216 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEE
T ss_pred EEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccc
Confidence 999999999999997 9999999874 456778889999999999888899999999999998864211 1112357
Q ss_pred eeeccccccccccC
Q 014154 351 DSAFADKEVANAAA 364 (430)
Q Consensus 351 ~~~~s~~g~~~~~~ 364 (430)
.++..++|.++.++
T Consensus 217 ~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 217 QLFPLQNGGLYICN 230 (276)
T ss_dssp EEEECTTSCEEEEE
T ss_pred cceEcCCCCEEEEe
Confidence 88888899883333
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=8.2e-14 Score=137.71 Aligned_cols=196 Identities=9% Similarity=-0.023 Sum_probs=135.3
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEECC--C-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---
Q 014154 167 FSKVD--ISEKF-SLFGGK-GVEVNVWDLD--K-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--- 236 (430)
Q Consensus 167 ~~~~~--~~~~~-l~~~~~-d~~i~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--- 236 (430)
...|+ |+++. |+.++. +..|+++++. . +. ...+..... ..+...+..++| +|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~----~~~~~~~~~~~~--spDg~~l~~~~~~~~~ 153 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA----VGGGLRWADPVL--LPERGEVWCMAEEFTG 153 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC----STTCEEEEEEEE--ETTTTEEEEEEEEECS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc----CCCCccccCcEE--CCCCCEEEEEEecccC
Confidence 44454 99988 776554 5667777775 2 33 333332110 001256788999 8999999998877
Q ss_pred -------CcEEEEECCCC-----CcceEEEe-ecCCCeEEEEecCCCCEEEEEeCC--------CcEEEEEcc-CC---e
Q 014154 237 -------HQVRLYDTSAQ-----RRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIR-TG---K 291 (430)
Q Consensus 237 -------g~i~iwd~~~~-----~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d--------~~i~iwd~~-~~---~ 291 (430)
..|++||+.+. .. ...+. .+...+..++|||||++|+.++.+ ..|++||+. ++ +
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 58999999872 22 34555 555678889999999999987755 379999998 57 4
Q ss_pred EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC--cEEEEECCCCceeeEEEeeccccce--------EEeeeccccccc-
Q 014154 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--YLRFWDIKTRQLLSAVFLKQHLNEV--------VFDSAFADKEVA- 360 (430)
Q Consensus 292 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~--------v~~~~~s~~g~~- 360 (430)
......++ ...+..+.|+|||+++++++.++ .|++||+.+++.... ..++ ... +..++|+|++.+
T Consensus 233 ~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l--~~~~-~~~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 233 TRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL--CRRE-EEFAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp EEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES--SCCS-SBSSCCCCSTTCCSEEECTTSCEE
T ss_pred cEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec--cccc-ccccCccccccCceEeEeCCCEEE
Confidence 44444444 67899999999999888888888 677777767765543 2222 111 356788899988
Q ss_pred cccCCCCceEecCCC
Q 014154 361 NAAADAPMLEIQNGN 375 (430)
Q Consensus 361 ~~~~~d~~i~~~~~~ 375 (430)
+++.. +.+++|..+
T Consensus 309 ~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 309 VVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEBS-SSCEEEEEE
T ss_pred EEEEc-CccEEEEEE
Confidence 66666 899999443
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=7.4e-13 Score=119.87 Aligned_cols=242 Identities=13% Similarity=0.076 Sum_probs=150.5
Q ss_pred CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC---CeeEEEEeeecCccccCC
Q 014154 74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESS 150 (430)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~ 150 (430)
++.|.+||+.+++.. .+. .+....|.+.. ..++....+ +...||.+....
T Consensus 42 ~~~l~~~d~~~~~~~-~l~------------~~~~~~~SpDg--------~~la~~~~~~~~~~~~l~~~~~~~------ 94 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FIE------------NATMPRISPDG--------KKIAFMRANEEKKVSEIWVADLET------ 94 (347)
T ss_dssp EEEEEEEETTTCCEE-EEE------------SCEEEEECTTS--------SEEEEEEEETTTTEEEEEEEETTT------
T ss_pred cceEEEEeCCCCceE-Ecc------------cCCCeEECCCC--------CEEEEEEeccCCCcceEEEEECCC------
Confidence 677999999877632 221 23334443332 245544432 444455443211
Q ss_pred CcceEEeeecCCCceEEEEEcCCCCEEEEEeCC---------------------------CeEEEEECCCCeeeEeeCCC
Q 014154 151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---------------------------VEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~~~~~~~~ 203 (430)
.....+... .. +..++|+|+++.|+.++.+ ..|++||+.+++.+..+..
T Consensus 95 g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~- 170 (347)
T 2gop_A 95 LSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK- 170 (347)
T ss_dssp TEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-
T ss_pred CceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-
Confidence 112333332 23 8899999999999887642 5799999988876333322
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-------cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 276 (430)
. .+..+.| +|++ +++++..+. ...||.+.+ .. ...+..+ ..+..+ +|+|++|+.+
T Consensus 171 ~----------~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--spdg~~l~~~ 232 (347)
T 2gop_A 171 P----------RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DSDGERILLY 232 (347)
T ss_dssp E----------TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EECSSCEEEE
T ss_pred C----------CcccccC--CCCe-EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CCCCCEEEEE
Confidence 1 2567788 7899 777776542 334444433 32 3444444 455554 9999998887
Q ss_pred eCC--------CcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccc
Q 014154 277 NGS--------GDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 277 ~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
+.+ ..|.+|| +++.......+ ...+.. +.|+ ++ ++++++.++.++|| +.+++.... . .+ ..
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~--~-~~-~~ 302 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI--A-KG-RH 302 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE--E-CS-SS
T ss_pred EccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE--e-cC-CC
Confidence 754 3688888 66655444444 677886 9999 88 89999999999999 876665332 2 23 45
Q ss_pred eEEeeeccccccccccCCCCce-EecCCC
Q 014154 348 VVFDSAFADKEVANAAADAPML-EIQNGN 375 (430)
Q Consensus 348 ~v~~~~~s~~g~~~~~~~d~~i-~~~~~~ 375 (430)
.+.+++|+| .-+++++.++.. .+|..+
T Consensus 303 ~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 303 WIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred eEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 578999999 444555555544 666554
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=1.1e-12 Score=120.94 Aligned_cols=273 Identities=7% Similarity=-0.056 Sum_probs=150.2
Q ss_pred CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCC
Q 014154 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED 103 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 103 (430)
..|.+|++.++ +... +..+.... .....| +|||++|+.++.++.|.+||+.+++.......... +.+..
T Consensus 60 ~~l~~~d~~~~-----~~~~-l~~~~~~~-~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g 128 (396)
T 3c5m_A 60 RNYYLLNLETQ-----QAVQ-LTEGKGDN-TFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYG 128 (396)
T ss_dssp CEEEEEETTTT-----EEEE-CCCSSCBC-TTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEE
T ss_pred ceEEEEECCCC-----cEEE-eecCCCCc-cccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCC
Confidence 36778888875 3332 33222221 111345 88999999999999999999987765443332100 00000
Q ss_pred CceEEEEEeecCcc-------cccc-cCceEEEE-----ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 104 DGIVGLHLFKRQRE-------ESSS-RSRTLLTC-----TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 104 ~~i~~~~~~~~~~~-------~~~~-~~~~~~~~-----~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
. .+.+...... ..-+ ....++.. .....+.+|++... ...... .+...+..+.|
T Consensus 129 ~---~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g---------~~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 129 T---WVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG---------ELEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp E---EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC---------CEEEEE-EESSCEEEEEE
T ss_pred C---EEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC---------cEEeec-cCCcccccceE
Confidence 0 0000000000 0000 00111111 12223444443211 111111 23456788999
Q ss_pred cC-CCCEEEEEeCC------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----Cc
Q 014154 171 DI-SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQ 238 (430)
Q Consensus 171 ~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~ 238 (430)
+| ++..|+..+.+ ..|.+||+..+... .+..+.. ...+..++| +|+++.|+.++.+ +.
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~-------~~~~~~~~~--spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE-------GESCTHEFW--IPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT-------TEEEEEEEE--CTTSSCEEEEEEETTTCCEE
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC-------CccccceEE--CCCCCEEEEEecCCCCccce
Confidence 99 78877766543 36888898755432 2221110 134778899 8999987776544 44
Q ss_pred EEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEe----------------CCCcEEEEEccCCeEEeeeeCCCC
Q 014154 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGN----------------GSGDLASVDIRTGKLLGCFIGKCS 301 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~----------------~d~~i~iwd~~~~~~~~~~~~~~~ 301 (430)
|++||+.+++. ..+.... ... +.|+| +++++++++ .+..|++||+.+++.. .+..+ .
T Consensus 266 l~~~d~~~g~~--~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~ 339 (396)
T 3c5m_A 266 IYKANPETLEN--EEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH-S 339 (396)
T ss_dssp EEEECTTTCCE--EEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC-C
T ss_pred EEEEECCCCCe--EEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC-C
Confidence 99999987652 2222221 233 88999 999888765 3478999999887753 34443 2
Q ss_pred C-----------CeEEEEecCCCCeEEEEeC-CCc--EEEEECCCCcee
Q 014154 302 G-----------SIRSIARHPTLPIIASCGL-DSY--LRFWDIKTRQLL 336 (430)
Q Consensus 302 ~-----------~v~~i~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~ 336 (430)
. .+..+.|+|+|+.|+.++. ++. |+++++.+++..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 340 TSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred CccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 2 2567889999998877764 444 455555555443
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=1.4e-12 Score=115.38 Aligned_cols=220 Identities=8% Similarity=-0.073 Sum_probs=149.1
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
.+++...++.+..|+.. .+ +..+. .....+.+++++++++++++...++.|.+||..+++.........
T Consensus 42 l~~~~~~~~~i~~~~~~---------~~-~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 110 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDD---------GQ-LSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE 110 (296)
T ss_dssp EEEEEGGGTEEEEEETT---------SC-EEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred EEEEeCCCCEEEEEECC---------CC-eEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence 56777788888888743 12 44554 345678999999999988777677899999998776543322111
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----------------CCcEEEEECCCCCcceEEEeecCCCeEEEEec
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 267 (430)
.. ....+..+++ +|+|+++++... .+.|..++.. +. +..+..+......++|+
T Consensus 111 ~~-----~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 111 GK-----KLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp TE-----ECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEEC
T ss_pred CC-----CCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEEC
Confidence 10 0134677888 889998887321 2456666554 22 44455556678999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcc-CCeE---EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154 268 PDSFNIYIGNGSGDLASVDIR-TGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 268 p~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 343 (430)
|+++.|++.+.++.|.+||+. +++. ...+..+ ...+.+++++++|.++++. ++.|.+||.. ++.+..+ ..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~--~~ 254 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV--LT 254 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE--EC
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE--EC
Confidence 999988777778999999997 5554 3344223 5567889999999866665 7889999986 7777764 33
Q ss_pred cccceEEeeec-cccccc-cccCCCCceEecCC
Q 014154 344 HLNEVVFDSAF-ADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 344 ~~~~~v~~~~~-s~~g~~-~~~~~d~~i~~~~~ 374 (430)
+.. +.+++| +|+++. .+++.+ .+.-++.
T Consensus 255 ~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~ 284 (296)
T 3e5z_A 255 PQT--TSNLCFGGPEGRTLYMTVST-EFWSIET 284 (296)
T ss_dssp SSC--CCEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred CCC--ceeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence 422 688899 588876 444444 3433333
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=7.8e-13 Score=115.19 Aligned_cols=223 Identities=7% Similarity=-0.091 Sum_probs=151.2
Q ss_pred ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC
Q 014154 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG 209 (430)
Q Consensus 130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 209 (430)
..++.+.+++.... ....+.......+.+++++++++++++.. ++.|.+||....... .+...
T Consensus 43 ~~~~~i~~~~~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~------ 105 (270)
T 1rwi_B 43 GMYGRVVKLATGST---------GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD------ 105 (270)
T ss_dssp SSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC------
T ss_pred CCCCcEEEecCCCc---------ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC------
Confidence 55667777653211 12222222234678899999988665555 889999998764432 22111
Q ss_pred CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154 210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 289 (430)
....+..+++ .+++.++++...++.|.+|+..+... ..........+.+++++|+++++++...++.|.+||...
T Consensus 106 --~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 106 --GLNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp --SCSSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred --CcCCCcceEE--CCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 1145788899 78888877777788999998765332 221222234678899999998777766788999999987
Q ss_pred CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCc
Q 014154 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM 368 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~ 368 (430)
.........+ ...+.+++++++|.++++...++.|.+|+......... ...+. ..+.+++++++|.+ ++...++.
T Consensus 181 ~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--~~~~~-~~p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 181 NNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--PFTGL-NTPLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp CCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--CCCSC-SCEEEEEECTTCCEEEEEGGGTE
T ss_pred CceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--ccCCC-CCceeEEECCCCCEEEEECCCCE
Confidence 6654433333 36789999999997777777788999999876543321 11221 34689999999988 88888999
Q ss_pred eEecCCCCCc
Q 014154 369 LEIQNGNDTQ 378 (430)
Q Consensus 369 i~~~~~~~~~ 378 (430)
|++|+....+
T Consensus 257 v~~~~~~~~~ 266 (270)
T 1rwi_B 257 VVKLTSLEHH 266 (270)
T ss_dssp EEEECCCGGG
T ss_pred EEEEcCCCcc
Confidence 9999987644
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=5.7e-12 Score=113.33 Aligned_cols=255 Identities=11% Similarity=0.035 Sum_probs=157.7
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
++....++.++.| .. .....+..+... .....+ +|+|++++++..++.|.+||..+++.......
T Consensus 20 ~~~~~~~~~~~~~--~~------~~~~~~~~~~~~--~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~--- 84 (333)
T 2dg1_A 20 AVPIISESELQTI--TA------EPWLEISKKGLQ--LEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPFVS--- 84 (333)
T ss_dssp SSCCCCGGGSCEE--EC------EEEEEEESSCCC--EEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---
T ss_pred eeEEeecccCccc--cc------ceeEEEeccCcc--ccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC---
Confidence 4445678889999 22 333344444343 334455 57888777888899999999987765433211
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccC----CeeEEEEeeecCccccCCCcceE-Eee-ecCCCceEEEEE
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVK-SWN-VCASGTIAFSKV 170 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~i~-~~~-~~~~~~i~~~~~ 170 (430)
....+.++.+.+. . ..+++...+ +.+.+|+.... .+. +.. ......+..+++
T Consensus 85 -----~~~~~~~i~~~~d-g-------~l~v~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 85 -----HKANPAAIKIHKD-G-------RLFVCYLGDFKSTGGIFAATENGD---------NLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp -----SSSSEEEEEECTT-S-------CEEEEECTTSSSCCEEEEECTTSC---------SCEEEECSSSSCCCEEEEEE
T ss_pred -----CCCCcceEEECCC-C-------cEEEEeCCCCCCCceEEEEeCCCC---------EEEEEEccCccCCcccceEE
Confidence 1235555555332 2 244444444 46666654321 222 221 123456889999
Q ss_pred cCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEE
Q 014154 171 DISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYD 243 (430)
Q Consensus 171 ~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd 243 (430)
+|+++++++... .+.|..+|..+++....... ...+..++| +|+++.|+ +.+.++.|.+||
T Consensus 143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~i~~--~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----------ISVANGIAL--STDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----------ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----------CCcccceEE--CCCCCEEEEEeCCCCeEEEEE
Confidence 999987776553 35677777655443222111 134678889 89988654 445678999999
Q ss_pred CCCCCcceEEE--------eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC------CeEEEEe
Q 014154 244 TSAQRRPVMSF--------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG------SIRSIAR 309 (430)
Q Consensus 244 ~~~~~~~~~~~--------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~i~~ 309 (430)
+......+..+ .++ ..+..++++++|+++++...++.|.+||. +++.+..+..+ .. .+.+++|
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~-~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP-GRDEGHMLRSTHPQF 287 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT-TGGGTCSCBCCEEEE
T ss_pred ecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC-CCccccccCcceEEE
Confidence 96422112111 111 36788999999988887777899999998 56666666543 22 5899999
Q ss_pred cCCCCeEEEEeCCC
Q 014154 310 HPTLPIIASCGLDS 323 (430)
Q Consensus 310 ~~~~~~l~s~~~dg 323 (430)
+|++..|+.++.++
T Consensus 288 ~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 288 IPGTNQLIICSNDI 301 (333)
T ss_dssp CTTSCEEEEEEECG
T ss_pred CCCCCEEEEEeCcc
Confidence 99987776665553
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=4.3e-12 Score=112.17 Aligned_cols=228 Identities=10% Similarity=0.005 Sum_probs=148.2
Q ss_pred eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154 17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD 96 (430)
Q Consensus 17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (430)
++++..++.|..|+..+ . ...+..+... ..++.+ +|+|+++++...++.|.+||..+++........
T Consensus 43 ~~~~~~~~~i~~~~~~~------~-~~~~~~~~~~--~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-- 109 (296)
T 3e5z_A 43 IFSDVRQNRTWAWSDDG------Q-LSPEMHPSHH--QNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSF-- 109 (296)
T ss_dssp EEEEGGGTEEEEEETTS------C-EEEEESSCSS--EEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEE--
T ss_pred EEEeCCCCEEEEEECCC------C-eEEEECCCCC--cceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc--
Confidence 66777888999999887 2 3344444444 445555 678887777766789999998666522111000
Q ss_pred CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154 97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176 (430)
Q Consensus 97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~ 176 (430)
.. .....+..++++|++++
T Consensus 110 ------------------~~-------------------------------------------~~~~~~~~i~~d~~G~l 128 (296)
T 3e5z_A 110 ------------------EG-------------------------------------------KKLNSPNDVCLAPDGSL 128 (296)
T ss_dssp ------------------TT-------------------------------------------EECCCCCCEEECTTSCE
T ss_pred ------------------CC-------------------------------------------CCCCCCCCEEECCCCCE
Confidence 00 00123445667777776
Q ss_pred EEE----Ee-------------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 177 SLF----GG-------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 177 l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
+++ |+ ..+.|..++.. ++... +.... ..+..++| +|+++.+++.+.++.|
T Consensus 129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~---------~~~~gi~~--s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PIRDR---------VKPNGLAF--LPSGNLLVSDTGDNAT 195 (296)
T ss_dssp EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EECCC---------SSEEEEEE--CTTSCEEEEETTTTEE
T ss_pred EEECCccccccccccccccccCCCcEEEEECCC-CCEEE-eecCC---------CCCccEEE--CCCCCEEEEeCCCCeE
Confidence 665 22 13456666654 33322 22211 44678999 8999988777788999
Q ss_pred EEEECCCCCcc---eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe-cCCCCe
Q 014154 240 RLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR-HPTLPI 315 (430)
Q Consensus 240 ~iwd~~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~ 315 (430)
.+|++...... ...+..+...+.+++++++|+++++. ++.|.+||.. ++.+..+..+ .. +.+++| +|++..
T Consensus 196 ~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~ 270 (296)
T 3e5z_A 196 HRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRT 270 (296)
T ss_dssp EEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCE
T ss_pred EEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCE
Confidence 99999722222 22333345567789999999866655 7889999986 7888888876 55 899999 689998
Q ss_pred EEEEeCCCcEEEEECCCCceee
Q 014154 316 IASCGLDSYLRFWDIKTRQLLS 337 (430)
Q Consensus 316 l~s~~~dg~i~iwd~~~~~~~~ 337 (430)
|++++.++ +.-++.++.+..+
T Consensus 271 L~v~t~~~-l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 271 LYMTVSTE-FWSIETNVRGLEH 291 (296)
T ss_dssp EEEEETTE-EEEEECSCCBCCC
T ss_pred EEEEcCCe-EEEEEcccccccc
Confidence 88888764 6666776655443
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=3.1e-12 Score=111.34 Aligned_cols=241 Identities=7% Similarity=-0.095 Sum_probs=152.1
Q ss_pred eeeeeecCCCCCceeE-EeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154 54 VLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
..++.+ .|+|++++ +...++.|.+|+..++... .+.. .....+.++.+-+ . +.++.+..+
T Consensus 26 p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~-------~~~~~p~~i~~~~-~--------g~l~v~~~~ 86 (270)
T 1rwi_B 26 PSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPF-------NGLYQPQGLAVDG-A--------GTVYVTDFN 86 (270)
T ss_dssp EEEEEE--CTTCCEEEEECSSSCEEEEECC-----E-ECCC-------CSCCSCCCEEECT-T--------CCEEEEETT
T ss_pred ccceEE--CCCCCEEEEccCCCCcEEEecCCCcccc-eEee-------CCcCCcceeEECC-C--------CCEEEEcCC
Confidence 445555 67788666 4467899999997554321 1110 0111233344322 2 234333336
Q ss_pred CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154 133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212 (430)
Q Consensus 133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 212 (430)
+.+.+++.... .+..+.......+..++++++++++++...++.|.+|+..+..........
T Consensus 87 ~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--------- 148 (270)
T 1rwi_B 87 NRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG--------- 148 (270)
T ss_dssp TEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS---------
T ss_pred CEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc---------
Confidence 77777764311 222232222356889999999987777777889999976554333221111
Q ss_pred CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL 292 (430)
Q Consensus 213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 292 (430)
...+.++++ +++++++++...++.|.+||...... ......+...+.+++++++|.++++...++.|.+||......
T Consensus 149 ~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 149 LNDPDGVAV--DNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CCSCCCEEE--CTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred CCCceeEEE--eCCCCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 134678888 78888777777788999999886442 222222335788999999997777766788999999876544
Q ss_pred EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 293 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
......+ ...+.+++++++|.++++...++.|++|++...+.
T Consensus 226 ~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 226 TVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EECCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred eeeccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 3322222 35789999999999888888999999999876554
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=4.8e-11 Score=107.37 Aligned_cols=293 Identities=14% Similarity=0.082 Sum_probs=179.5
Q ss_pred cceeeecC-----CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEE
Q 014154 15 LRALTFDS-----LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (430)
Q Consensus 15 ~~l~t~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~i 79 (430)
-+++..+. ++.|.+.|..++ +++.++.....+ . +.+ +|||++|+++. .++.|.+
T Consensus 45 ~~vyV~~~~~~~~~~~V~ViD~~t~-----~v~~~I~vG~~P-~---va~--spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 45 RRVYVNDPAHFAAVTQQFVIDGEAG-----RVIGMIDGGFLP-N---PVV--ADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp TEEEEEECGGGCSSEEEEEEETTTT-----EEEEEEEECSSC-E---EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEEcCcccCCCCEEEEEECCCC-----eEEEEEECCCCC-c---EEE--CCCCCEEEEEcccccccccCCCCCEEEE
Confidence 45666554 679999999987 777666543333 2 444 77888888765 3678999
Q ss_pred ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc-c-CCeeEEEEeeecCccccCCCcceEEe
Q 014154 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T-KGKASMRSIEVTKVSAESSCSTVKSW 157 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~v~~~~~~~~~~~~~~~~i~~~ 157 (430)
||..+++.+..+..-....... ......+.+.+.. ..++.+. . ++.+.|+++.... .+..+
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~-g~~P~~~a~spDG--------k~lyVan~~~~~~VsVID~~t~~--------vv~tI 176 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLV-GTYPWMTSLTPDG--------KTLLFYQFSPAPAVGVVDLEGKA--------FKRML 176 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCB-SCCGGGEEECTTS--------SEEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred EECCCCeEEEEEECCCcccccc-CCCCceEEEcCCC--------CEEEEEEcCCCCeEEEEECCCCc--------EEEEE
Confidence 9999998887765310000000 0011123333332 2344333 2 5677777764332 33333
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcce-eEEEEeecCCCCEEEEEeC
Q 014154 158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWF-TSAAFLSIDDHRKFVAGTN 235 (430)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~ 235 (430)
.+. +. ...+....+.+++.+.||.+.+.++.+ ++........ +.. ....+ ....|. .++|++++ .+.
T Consensus 177 ~v~--g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~----~~~-~~~~~~~~~~~~-~~dG~~~~-vs~ 245 (386)
T 3sjl_D 177 DVP--DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHP-EDEFLINHPAYS-QKAGRLVW-PTY 245 (386)
T ss_dssp ECC--SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC----CSC-TTSCBCSCCEEE-TTTTEEEE-EBT
T ss_pred ECC--Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce----ecc-ccccccccceeE-cCCCcEEE-EeC
Confidence 321 11 122233456777888899999999876 5543222111 000 00111 123553 46775555 567
Q ss_pred CCcEEEEECCCCCc-ceEEEe----------ecCCCeEEEEecCCCCEEEEEeC----------CCcEEEEEccCCeEEe
Q 014154 236 DHQVRLYDTSAQRR-PVMSFD----------FRETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLG 294 (430)
Q Consensus 236 dg~i~iwd~~~~~~-~~~~~~----------~~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~ 294 (430)
+|.|++.|+.+... ....+. ........++++|+++.+++... .+.|.++|+.+++.+.
T Consensus 246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 89999999976431 111121 01123445778999998888753 2579999999999999
Q ss_pred eeeCCCCCCeEEEEecCCCC-eEEEE-eCCCcEEEEECCCCceeeEEEeeccccce
Q 014154 295 CFIGKCSGSIRSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348 (430)
Q Consensus 295 ~~~~~~~~~v~~i~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 348 (430)
.+.. ...+..+.+++|++ +|+++ ..++.|.++|..+++.+.++...+|....
T Consensus 326 ~i~v--g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l 379 (386)
T 3sjl_D 326 KFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV 379 (386)
T ss_dssp EEEE--EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCE
T ss_pred EEEC--CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCcee
Confidence 9886 34789999999996 66665 45899999999999999998777775443
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=3.2e-10 Score=100.03 Aligned_cols=273 Identities=8% Similarity=0.005 Sum_probs=173.0
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
..++.. .++|+++++...++.|.+||.. ++... +.. + .....+..+.+-+ .. ..+++...++
T Consensus 22 p~~i~~--d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~--~----~~~~~~~~i~~~~-~g-------~l~v~~~~~~ 83 (300)
T 2qc5_A 22 PYGITS--SEDGKVWFTQHKANKISSLDQS-GRIKE-FEV--P----TPDAKVMCLIVSS-LG-------DIWFTENGAN 83 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEE-EEC--S----STTCCEEEEEECT-TS-------CEEEEETTTT
T ss_pred cceeeE--CCCCCEEEEcCCCCeEEEECCC-CceEE-EEC--C----CCCCcceeEEECC-CC-------CEEEEecCCC
Confidence 445555 5678777766678999999986 55332 211 0 1113444454432 21 2444444456
Q ss_pred eeEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCc
Q 014154 134 KASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIF 211 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~ 211 (430)
.+.+++.. +.+..+... ....+..++++++++++++...++.|..||.. ++.... +...
T Consensus 84 ~v~~~d~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------- 144 (300)
T 2qc5_A 84 KIGKLSKK----------GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK-------- 144 (300)
T ss_dssp EEEEECTT----------SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST--------
T ss_pred eEEEECCC----------CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC--------
Confidence 66666532 233444432 23568899999999888777668899999987 544322 2111
Q ss_pred CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe
Q 014154 212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 291 (430)
...+..+++ .+++++.++...++.|..||. ++.........+...+.++++++++++.++....+.|.+||. +++
T Consensus 145 -~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 145 -GSYPAFITL--GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp -TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred -CCCceeEEE--CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 145788888 788887776666789999998 434212122233456889999999977776666778999998 555
Q ss_pred EEee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154 292 LLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 292 ~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~ 370 (430)
.... +..+ ...+.+++++++|.+.++...++.|..||. +++.. .+.+... ...+.++++.++|.+..+... .|.
T Consensus 220 ~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~-~~~~~~i~~~~~g~l~v~~~~-~i~ 294 (300)
T 2qc5_A 220 ISEYDIPTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTE-NAEPHGITFGKDGSVWFALKC-KIG 294 (300)
T ss_dssp EEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCST-TCCCCCEEECTTSCEEEECSS-EEE
T ss_pred EEEEECCCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCcc-CCccceeEeCCCCCEEEEccC-ceE
Confidence 4332 3333 467899999999987776666789999998 45443 3323322 233588999999988444444 565
Q ss_pred ecC
Q 014154 371 IQN 373 (430)
Q Consensus 371 ~~~ 373 (430)
.++
T Consensus 295 ~~~ 297 (300)
T 2qc5_A 295 KLN 297 (300)
T ss_dssp EEE
T ss_pred EeC
Confidence 554
No 194
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.53 E-value=1.3e-11 Score=121.41 Aligned_cols=307 Identities=12% Similarity=0.077 Sum_probs=191.9
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC---------cceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS---------NCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
..+++.++.++.|.-+|+.++ +.+=++...... ........ ++..|++++.|+.|..+|..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~t 147 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTG-----NRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAAT 147 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTT-----EEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTT
T ss_pred CCEEEEECCCCeEEEEECCCC-----cEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCC
Confidence 367888888999999999988 565444332111 00111222 234688889999999999999
Q ss_pred Ccccceeecc-CCCC-CCCCCCceEEEEEeecCcccccccCceEEEEcc------CCeeEEEEeeecCccccCCCcceEE
Q 014154 85 GDLRVAISNA-GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKS 156 (430)
Q Consensus 85 ~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~~~~~~~~~~i~~ 156 (430)
|+.+..+... .... ......++. . . +.++.+.. ++.+..++...... +
T Consensus 148 G~~~W~~~~~~~~~~~~~~~~~p~v----~---~-------~~v~v~~~~~~~~~~g~v~a~D~~tG~~----------~ 203 (677)
T 1kb0_A 148 GKEVWHQNTFEGQKGSLTITGAPRV----F---K-------GKVIIGNGGAEYGVRGYITAYDAETGER----------K 203 (677)
T ss_dssp CCEEEEEETTTTCCSSCBCCSCCEE----E---T-------TEEEECCBCTTTCCBCEEEEEETTTCCE----------E
T ss_pred CCEEeeecCCcCcCcCcccccCcEE----E---C-------CEEEEEecccccCCCCEEEEEECCCCcE----------E
Confidence 9988877642 1000 000011111 0 0 34444433 35555554432221 1
Q ss_pred eeecC---------------------------------CCceEEEEEcCCCCEEEEEeCCC-------------------
Q 014154 157 WNVCA---------------------------------SGTIAFSKVDISEKFSLFGGKGV------------------- 184 (430)
Q Consensus 157 ~~~~~---------------------------------~~~i~~~~~~~~~~~l~~~~~d~------------------- 184 (430)
|.... ......++++|++..++++..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 22111 11123578889999999887664
Q ss_pred eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---CEEEEEeCCCcEEEEECCCCCcceEEEeecC---
Q 014154 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--- 258 (430)
Q Consensus 185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--- 258 (430)
.|..+|..+++.++.++.................+.. ..+| ..++.++.+|.|+++|..+++. +..+....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~--~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~~ 360 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI--KIAGKPRKVILHAPKNGFFFVLDRTNGKF-ISAKNFVPVNW 360 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSS
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec--ccCCcEeeEEEEECCCCEEEEEECCCCCE-eccccccccCc
Confidence 5999999999999987653322111111111222222 2366 6789999999999999999774 44433211
Q ss_pred --------CCe------------------------EEEEecCCCCEEEEEeCC---------------------------
Q 014154 259 --------TPI------------------------KAVAEEPDSFNIYIGNGS--------------------------- 279 (430)
Q Consensus 259 --------~~i------------------------~~~~~sp~~~~l~~~~~d--------------------------- 279 (430)
.++ ..++|+|+..++++...+
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 011 156889998888876532
Q ss_pred ----------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154 280 ----------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343 (430)
Q Consensus 280 ----------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 343 (430)
+.|..||+.+++.+.++.. ..++....+...+.+++.++.||.+++||.++++.+..+.+..
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 7799999999999888864 3345555566778889999999999999999999999975433
Q ss_pred cccceEEeeeccccccc
Q 014154 344 HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 344 ~~~~~v~~~~~s~~g~~ 360 (430)
. ....-+.|..+|+.
T Consensus 519 ~--~~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 519 G--VVAAPSTYMVDGRQ 533 (677)
T ss_dssp C--CCSCCEEEEETTEE
T ss_pred C--cccCCEEEEeCCEE
Confidence 2 22245667788875
No 195
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.52 E-value=1.9e-11 Score=120.46 Aligned_cols=307 Identities=10% Similarity=0.076 Sum_probs=187.4
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCc---------ceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN---------CVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
..+++.++.++.|..+|+.++ +.+=++..+.... ....... .+..|++++.|+.|..+|..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG-----RLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEcCCCeEEEEECCCC-----ceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCC
Confidence 367888888999999999988 5554443322110 0011112 234688899999999999999
Q ss_pred Ccccceeecc-CCCC-CCCCCCceEEEEEeecCcccccccCceEEEEcc------CCeeEEEEeeecCccccCCCcceEE
Q 014154 85 GDLRVAISNA-GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKS 156 (430)
Q Consensus 85 ~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~~~~~~~~~~i~~ 156 (430)
|+.+..+... .... ......++. .+ +.++.+.. +|.+..++...... +
T Consensus 141 G~~~W~~~~~~~~~~~~~~~~sP~v----~~----------g~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~ 196 (689)
T 1yiq_A 141 GQRAWSVDTRADHKRSYTITGAPRV----VN----------GKVVIGNGGAEFGVRGYVTAYDAETGKE----------A 196 (689)
T ss_dssp CCEEEEEECCSCTTSCCBCCSCCEE----ET----------TEEEECCBCTTTCCBCEEEEEETTTCCE----------E
T ss_pred CCEeeeecCcCCCCCCccccCCcEE----EC----------CEEEEEeCCCccCCCCEEEEEECCCCcE----------E
Confidence 9988776642 1100 000111111 00 23333322 34444444322211 1
Q ss_pred eeec--------------------------------CCCceEEEEEcCCCCEEEEEeCCCe-------------------
Q 014154 157 WNVC--------------------------------ASGTIAFSKVDISEKFSLFGGKGVE------------------- 185 (430)
Q Consensus 157 ~~~~--------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~------------------- 185 (430)
|... .......++++|+..++++++.++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 2111 0111235788898899999888764
Q ss_pred EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC---EEEEEeCCCcEEEEECCCCCcceEEEeecC----
Q 014154 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---- 258 (430)
Q Consensus 186 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---- 258 (430)
|..+|.++++.++.++..............+..... ..++. .++.++.+|.++++|..+++. +.......
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~ 353 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAEL--PIDGKPRKVLMQAPKNGFFYVIDRATGEL-LSAKGIVPQSWT 353 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSSE
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEee--ccCCcEEEEEEEECCCCeEEEEECCCCCE-eccccccccccc
Confidence 999999999999987653221111101111111122 12454 788899999999999999774 32211100
Q ss_pred -----------------------------------CCeEEEEecCCCCEEEEEeC-------------------------
Q 014154 259 -----------------------------------TPIKAVAEEPDSFNIYIGNG------------------------- 278 (430)
Q Consensus 259 -----------------------------------~~i~~~~~sp~~~~l~~~~~------------------------- 278 (430)
..-..++|+|+..++++...
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 00113688898888887632
Q ss_pred --------------------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 279 --------------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 279 --------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
+|.|..||+.+++.+.++..+ .++..-.+...+.+++.++.||.|+.||.++|+.+..
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence 377999999999999888764 2334345666778999999999999999999999998
Q ss_pred EEeeccccceEEeeeccccccc
Q 014154 339 VFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 339 ~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
+.+... ....-+.|..+|+.
T Consensus 512 ~~~~~~--~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 512 QPAASG--VMAAPVTYSVDGEQ 531 (689)
T ss_dssp EECSSC--CCSCCEEEEETTEE
T ss_pred eeCCCC--cccCceEEEECCEE
Confidence 654332 22244677788875
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=3.5e-10 Score=99.65 Aligned_cols=269 Identities=8% Similarity=0.016 Sum_probs=165.5
Q ss_pred CCcceeeecC-CCceEEEEccCCCCCcceeee-ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154 13 PPLRALTFDS-LGLIKVIEARGEHGGVPKVVE-RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA 90 (430)
Q Consensus 13 ~~~~l~t~~~-dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~ 90 (430)
|...++.++. ++.|.+|+.. + ++.. ....+... ...+.+ .++|.++++...++.|..|+.. ++. ..
T Consensus 24 ~~g~l~v~~~~~~~v~~~d~~-~-----~~~~~~~~~~~~~--~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~-~~ 91 (299)
T 2z2n_A 24 DKGKVWITQHKANMISCINLD-G-----KITEYPLPTPDAK--VMCLTI--SSDGEVWFTENAANKIGRITKK-GII-KE 91 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTT-C-----CEEEEECSSTTCC--EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred CCCCEEEEecCCCcEEEEcCC-C-----CeEEecCCcccCc--eeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence 3445555554 6789999887 4 3322 11222233 455555 5678877776668899999975 432 22
Q ss_pred eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec-CCCceEEEE
Q 014154 91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSK 169 (430)
Q Consensus 91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~ 169 (430)
+.. + .....+..+.+-+ .. ..+++...++.+.+++. ++.+..+... ....+..++
T Consensus 92 ~~~--~----~~~~~~~~i~~~~-~g-------~l~v~~~~~~~i~~~d~----------~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 92 YTL--P----NPDSAPYGITEGP-NG-------DIWFTEMNGNRIGRITD----------DGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EEC--S----STTCCEEEEEECT-TS-------CEEEEETTTTEEEEECT----------TCCEEEEECSSTTCCEEEEE
T ss_pred EeC--C----CcCCCceeeEECC-CC-------CEEEEecCCceEEEECC----------CCCEEEecCCCCCCCCceEE
Confidence 221 0 0123444454432 21 24444455666766653 1233333322 345688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154 170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248 (430)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 248 (430)
++++++++++...++.|..||. +++.... .... ...+..+++ .+++.+.++...++.|.+||. ++.
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~---------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP---------ASGPVGITK--GNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---------TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCC
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC---------CCcceeEEE--CCCCCEEEEccCCceEEEECC-CCc
Confidence 9999988777767789999998 6554332 1111 145778888 788887777667889999999 544
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i 327 (430)
........+...+.+++++++|+++++...++.|..||. +++.... +..+ ...+.++++ +++.++++.. .+.|..
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~-~~~l~~ 290 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAME-CDKIGK 290 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEET-TTEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEec-CCcEEE
Confidence 212122334467899999999986666557789999998 5553322 2333 467899999 8888766655 566777
Q ss_pred EECCCCc
Q 014154 328 WDIKTRQ 334 (430)
Q Consensus 328 wd~~~~~ 334 (430)
++.++++
T Consensus 291 ~~~~~~~ 297 (299)
T 2z2n_A 291 LTLIKDN 297 (299)
T ss_dssp EEEC---
T ss_pred EEcCccc
Confidence 8876543
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=4.6e-12 Score=125.75 Aligned_cols=193 Identities=9% Similarity=-0.077 Sum_probs=133.2
Q ss_pred EEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCe----eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC
Q 014154 166 AFSKVDISEKFSLFGGKGVE-------------VNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR 228 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~-------------i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 228 (430)
..++|+|+++.|+.++.+.. |++|++.++. .+.....+ ...+..+.| +|+|+
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~---------~~~~~~~~~--SpDG~ 239 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD---------PTTFLQSDL--SRDGK 239 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC---------TTCEEEEEE--CTTSC
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC---------CEEEEEEEE--CCCCC
Confidence 57899999999999988766 9999998765 23222222 145778889 89999
Q ss_pred EEEEEeCCC----cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCeE--EeeeeC
Q 014154 229 KFVAGTNDH----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKL--LGCFIG 298 (430)
Q Consensus 229 ~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~ 298 (430)
+|+.++.++ .|.+|+..++. ...+..+...+....+ +++. |+..+. ++.|.+||+.+++. ...+..
T Consensus 240 ~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 240 YLFVYILRGWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp CEEEEEEETTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred EEEEEEeCCCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence 888877666 67777665433 4555566566666666 5666 554443 57899999987653 233333
Q ss_pred CC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEeeeccccccc-c----ccCCCCceEe
Q 014154 299 KC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEVA-N----AAADAPMLEI 371 (430)
Q Consensus 299 ~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~----~~~~d~~i~~ 371 (430)
++ ...+..++|+ ++.++++...|+..+||.+. +++.+..+ ..+....+..++++|++.. + +...++.|.+
T Consensus 316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTV--QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEEC--CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe--cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 32 4467888888 67788888999988888655 45555543 3332345678899999865 3 3345678999
Q ss_pred cCCCC
Q 014154 372 QNGND 376 (430)
Q Consensus 372 ~~~~~ 376 (430)
|+...
T Consensus 393 ~d~~~ 397 (695)
T 2bkl_A 393 TSVST 397 (695)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98765
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=2.4e-10 Score=103.95 Aligned_cols=270 Identities=11% Similarity=-0.066 Sum_probs=168.2
Q ss_pred CCCCceeEEeec--CC---eEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154 62 SQNDPLLAVARK--NG---LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 62 ~p~g~~l~~g~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
.|+++++++... .. .|.++|..+++.+..+.. + ..+ .+.+.+... .+..+.
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~----g----~~p--~i~~spDg~--------~lyv~n~~~~~~ 90 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG----G----FLP--NPVAAHSGS--------EFALASTSFSRI 90 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC----C----CCC--CeEECCCCC--------EEEEEecccccc
Confidence 366777777553 22 889999999887766543 1 111 345544332 343332
Q ss_pred ----cCCeeEEEEeeecCccccCCCcceEEeeec------CCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE
Q 014154 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW 198 (430)
Q Consensus 131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~ 198 (430)
.++.+.+++..... .+....+. .......++++|++++|+++.. ++.|.++| .+++.+.
T Consensus 91 ~rg~~~~~v~viD~~t~~--------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 91 AKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred ccCCCCCeEEEEECCCCc--------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 25667777764221 22222221 1123457899999999998874 57899999 9988876
Q ss_pred e-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe-----ecCCCe-EEEEecCCCC
Q 014154 199 T-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----FRETPI-KAVAEEPDSF 271 (430)
Q Consensus 199 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~i-~~~~~sp~~~ 271 (430)
. +... . ++.+. ......+++.+.||.+.++|. +++. ..... ....++ ....+.+++.
T Consensus 162 ~~i~~~----------~---~~~~~-~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 162 QLLSSP----------T---CYHIH-PGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEcCCC----------c---eEEEE-eCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceeecceeEecCC
Confidence 6 5432 1 13332 223345667778999999999 6553 32211 111222 2345666665
Q ss_pred EEEEEeCCCcEEEEEccCCe--EEeeeeCC---------CCCCeEEEEecCCCCeEEEEeC----------CCcEEEEEC
Q 014154 272 NIYIGNGSGDLASVDIRTGK--LLGCFIGK---------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDI 330 (430)
Q Consensus 272 ~l~~~~~d~~i~iwd~~~~~--~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~ 330 (430)
.++..+..+.+.+.|+.... .+..+... .......+.++|++..|+.+.. ++.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 55555578899999997553 22332210 0123445789999988877653 357999999
Q ss_pred CCCceeeEEEeeccccceEEeeecccccc-c-cccC-CCCceEecCCCCCc
Q 014154 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAA-DAPMLEIQNGNDTQ 378 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~-~d~~i~~~~~~~~~ 378 (430)
.+++.+.++...+ ...+++|+|||+ + +++. .++.|.++|.....
T Consensus 306 ~t~~vv~~i~~g~----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 306 LVGQTSSQISLGH----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCEEEEEEECCC----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999864332 358999999999 5 4444 58999999987644
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.48 E-value=1.7e-11 Score=121.66 Aligned_cols=242 Identities=9% Similarity=-0.083 Sum_probs=148.3
Q ss_pred eeeeeecCCCCCceeE-----EeecCCeEEEecCCCCccc-ce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154 54 VLAASIDDSQNDPLLA-----VARKNGLTDILNPLNGDLR-VA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL 126 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~-----~g~~dg~i~iwd~~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 126 (430)
+..+.+ +|||++|| .|+.+..|++||+.+++.+ .. +... ....+.|.+.. ..+
T Consensus 123 ~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~----------~~~~~~wspDg--------~~l 182 (695)
T 2bkl_A 123 LGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG----------KYATPKWTPDS--------KGF 182 (695)
T ss_dssp EEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC----------TTCCCEECTTS--------SEE
T ss_pred EEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc----------cccceEEecCC--------CEE
Confidence 555666 89999999 4555678999999988865 21 1111 00123333322 245
Q ss_pred EEEccCCe-------------eEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcCCCCEEEEEeCCC----eEEE
Q 014154 127 LTCTTKGK-------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGV----EVNV 188 (430)
Q Consensus 127 ~~~~~~g~-------------~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~----~i~~ 188 (430)
+.++.+.. +.+|++..... ....++... +...+..+.|+|+|++|++.+.++ .|++
T Consensus 183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp EEEECCCCTTSCGGGGGGGCEEEEEETTSCGG------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred EEEEecCCCCCccccCCCCCEEEEEECCCCch------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 55544333 67776543220 123344322 234678999999999998887665 6777
Q ss_pred EECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCc--ceEEEeec-CCCeE
Q 014154 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR--PVMSFDFR-ETPIK 262 (430)
Q Consensus 189 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~-~~~i~ 262 (430)
|+..++... .+..+. ..+....+ +++.+++.+. .++.|.+||+.++.. ....+..+ ...+.
T Consensus 257 ~~~~~~~~~-~l~~~~---------~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 257 KRPGEKDFR-LLVKGV---------GAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL 323 (695)
T ss_dssp ECTTCSSCE-EEEECS---------SCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred EcCCCCceE-EeecCC---------CceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence 776554332 222221 22344444 3455444443 257899999987542 12333333 44678
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCCCeEEEE----eCCCcEEEEECCCCce
Q 014154 263 AVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTRQL 335 (430)
Q Consensus 263 ~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~----~~dg~i~iwd~~~~~~ 335 (430)
.++|+ ++.++++...|+..+||.+. +++....+..+....+..+.++|++..|+.. ...++|++||+.+++.
T Consensus 324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 324 SVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88888 67788888899988887655 4655566654435678888999999766633 2347899999988774
No 200
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.48 E-value=8.8e-11 Score=107.49 Aligned_cols=307 Identities=12% Similarity=0.090 Sum_probs=186.7
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCC--------CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH--------SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
..++++++.+|.|..+|..++ +.+-.+.... .......... ++..|++++.++.|..+|..+|
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG 123 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDG-----KEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDG 123 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTC-----CEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEcCCCeEEEEEccCC-----ceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCC
Confidence 367888999999999999887 4443332211 1111111222 2346888889999999999999
Q ss_pred cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154 86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI 165 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i 165 (430)
+.+......... ...++. . . +.++.++.++.+..++..... .+|.......+
T Consensus 124 ~~~W~~~~~~~~----~~~p~~-----~--~-------~~v~v~~~~g~l~~~d~~tG~----------~~W~~~~~~~~ 175 (376)
T 3q7m_A 124 TVAWQTKVAGEA----LSRPVV-----S--D-------GLVLIHTSNGQLQALNEADGA----------VKWTVNLDMPS 175 (376)
T ss_dssp CEEEEEECSSCC----CSCCEE-----E--T-------TEEEEECTTSEEEEEETTTCC----------EEEEEECCC--
T ss_pred CEEEEEeCCCce----EcCCEE-----E--C-------CEEEEEcCCCeEEEEECCCCc----------EEEEEeCCCCc
Confidence 987666542111 001111 1 1 467777777777776643221 23443332222
Q ss_pred E------EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC-CCcCCcce-eEEEEeecCCCCEEEEEeCCC
Q 014154 166 A------FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWF-TSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 166 ~------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg 237 (430)
. .... .+..+++++.++.|..+|..+++.++.......... .+.....+ ..... .+..++.++.++
T Consensus 176 ~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~v~~~~~~g 249 (376)
T 3q7m_A 176 LSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV----VNGVVFALAYNG 249 (376)
T ss_dssp ---CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE----ETTEEEEECTTS
T ss_pred eeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE----ECCEEEEEecCc
Confidence 1 1112 245788888899999999999999887654321000 00000001 11112 345777788899
Q ss_pred cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
.+..+|..+++. +.... ......+.. ++..|++++.++.|..+|..+++.+..........+..... .+..|+
T Consensus 250 ~l~~~d~~tG~~-~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~ 322 (376)
T 3q7m_A 250 NLTALDLRSGQI-MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLV 322 (376)
T ss_dssp CEEEEETTTCCE-EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEE
T ss_pred EEEEEECCCCcE-Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEE
Confidence 999999998764 33333 233445544 35688888899999999999999887776321222333333 346788
Q ss_pred EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecC
Q 014154 318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN 373 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~ 373 (430)
.++.+|.|+++|..+++.+....+.+ ... .......++.++.++.+|.|..|+
T Consensus 323 v~~~~g~l~~~d~~tG~~~~~~~~~~--~~~-~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 323 VGDSEGYLHWINVEDGRFVAQQKVDS--SGF-QTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECCT--TCB-CSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEecCC--Ccc-eeCCEEECCEEEEEeCCCEEEEEe
Confidence 89999999999999999988754321 111 221222366778888899998885
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=1.2e-09 Score=99.29 Aligned_cols=282 Identities=10% Similarity=-0.042 Sum_probs=170.9
Q ss_pred cceeeecC--CC---ceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEE
Q 014154 15 LRALTFDS--LG---LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI 79 (430)
Q Consensus 15 ~~l~t~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~i 79 (430)
-+++..+. .+ +|.++|..++ +++.++.....+ .+.+ +|||++|+++. .++.|.+
T Consensus 33 ~~~yv~~~~~~~~~~~v~v~D~~t~-----~~~~~i~~g~~p----~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 33 RRSYINLPAHHSAIIQQWVLDAGSG-----SILGHVNGGFLP----NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred CEEEEeCCcccCCccEEEEEECCCC-----eEEEEecCCCCC----CeEE--CCCCCEEEEEeccccccccCCCCCeEEE
Confidence 34555553 33 8899999887 666665532222 4445 78999998875 3678999
Q ss_pred ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEEEEeeecCccccCCCcceEE-
Q 014154 80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKS- 156 (430)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~- 156 (430)
||..+.+.+..+..-....+... .....+.+.+.. ..++.+.. ++.+.+++ .... .+..
T Consensus 102 iD~~t~~~~~~i~~~~~~~~~~g-~~p~~~~~spDG--------~~l~v~n~~~~~~v~viD-~t~~--------~~~~~ 163 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPRFDVG-PYSWMNANTPNN--------ADLLFFQFAAGPAVGLVV-QGGS--------SDDQL 163 (373)
T ss_pred EECCCCcEEEEEECCCccccccC-CCccceEECCCC--------CEEEEEecCCCCeEEEEE-CCCC--------EEeEE
Confidence 99988877766543100000000 112234443333 35554443 46677776 4322 2222
Q ss_pred eeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc-eeEEEEeecCCCCEEEEEe
Q 014154 157 WNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW-FTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~ 234 (430)
... .. ++.+.|.+ ..+++.+.||.+.++|. +++........... . .... .....| .+++..++..+
T Consensus 164 i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~---~~~p~~~~~~~--~~~~~~~~~~~ 231 (373)
T 2mad_H 164 LSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-T---AAQNLLTQPAQ--ANKSGRIVWPV 231 (373)
T ss_pred cCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-c---CCcceeeccee--EecCCEEEEEc
Confidence 221 12 23444544 45566778999999999 77766332210000 0 0011 122344 34444444445
Q ss_pred CCCcEEEEECCCCCc-ceEEEeec----------CCCeEEEEecCCCCEEEEEeC----------CCcEEEEEccCCeEE
Q 014154 235 NDHQVRLYDTSAQRR-PVMSFDFR----------ETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLL 293 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~-~~~~~~~~----------~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~ 293 (430)
..+.+.+.|+..... .+..+... ......+.++|+++.++++.. ++.|.++|+.+++.+
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 788999999975431 11222111 122445789999998888653 357999999999999
Q ss_pred eeeeCCCCCCeEEEEecCCCC-eEEEEe-CCCcEEEEECCCCceeeEE
Q 014154 294 GCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 339 (430)
.++.. .....++.|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 312 ~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 312 SQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99876 34689999999999 777777 5899999999999998873
No 202
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.47 E-value=2.1e-11 Score=110.22 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=143.9
Q ss_pred CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC---C--eEEEecCCCCcccceeeccCCC
Q 014154 23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---G--LTDILNPLNGDLRVAISNAGDS 97 (430)
Q Consensus 23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d---g--~i~iwd~~~~~~~~~~~~~~~~ 97 (430)
++.|.+|++.++ +.. .+ .. +....| +|||++||..+.+ + .|.+|++.+++........
T Consensus 42 ~~~l~~~d~~~~-----~~~-~l----~~--~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--- 104 (347)
T 2gop_A 42 ENTIVIENLKNN-----ARR-FI----EN--ATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK--- 104 (347)
T ss_dssp EEEEEEEETTTC-----CEE-EE----ES--CEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---
T ss_pred cceEEEEeCCCC-----ceE-Ec----cc--CCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---
Confidence 567888888875 222 22 22 344556 8999999887654 3 3778888776644333221
Q ss_pred CCCCCCCceEEEEEeecCcccccccCceEEEEccC---------------------------CeeEEEEeeecCccccCC
Q 014154 98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---------------------------GKASMRSIEVTKVSAESS 150 (430)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------g~~~v~~~~~~~~~~~~~ 150 (430)
.+..+.|.+.. ..++..+.+ ..+.+|++..
T Consensus 105 -------~~~~~~wspdg--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~-------- 161 (347)
T 2gop_A 105 -------NIRSLEWNEDS--------RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES-------- 161 (347)
T ss_dssp -------EEEEEEECTTS--------SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--------
T ss_pred -------CccceeECCCC--------CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--------
Confidence 14444443322 245444421 2344444321
Q ss_pred Ccce-EEeeecCCCceEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 151 CSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKGV-------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 151 ~~~i-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
+.. +.+.. . .+..+.|+|++ +++++..+. ...+|.+.+++.. .+..+ ..+ ..+
T Consensus 162 -~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~----------~~~--~~~- 222 (347)
T 2gop_A 162 -EEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK----------VSF--YAV- 222 (347)
T ss_dssp -TEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE----------ESE--EEE-
T ss_pred -CeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC----------cce--eeE-
Confidence 122 33332 2 67788999999 777775542 3344433344332 22111 112 223
Q ss_pred ecCCCCEEEEEeCC--------CcEEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154 223 SIDDHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293 (430)
Q Consensus 223 ~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 293 (430)
+|+|+.|+.++.+ ..|.+|| +++ .......+...+.. +.|+ ++ ++++++.++.++|| +.+++..
T Consensus 223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 223 -DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp -EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE
T ss_pred -CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE
Confidence 6899988877754 3688888 333 23333445667886 8999 88 88999999999999 8866654
Q ss_pred eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcE-EEEECCCCc
Q 014154 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYL-RFWDIKTRQ 334 (430)
Q Consensus 294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i-~iwd~~~~~ 334 (430)
.+..+ ...|.+++|+| .++++++.++.. .||.+. ++
T Consensus 296 -~~~~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 296 -PIAKG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp -EEECS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred -EEecC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 34444 67899999999 677777777665 777766 54
No 203
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.47 E-value=3.2e-12 Score=127.25 Aligned_cols=196 Identities=9% Similarity=0.027 Sum_probs=137.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154 164 TIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 238 (430)
.+..++|+|++++|+.+..++ .|++||+.+++........ ..+..++| +||++.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----------~~~~~~~w--spDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----------VKFSCMAW--THDGKGMFYNAYPQQ 193 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----------ECSCCEEE--CTTSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----------cccceEEE--EeCCCEEEEEEECCc
Confidence 477899999999998776543 8999999998876532111 22567889 899999999888766
Q ss_pred ----------------EEEEECCCCCcc-eEEEee--cCCCeEEEEecCCCCEEEEEeC-----CCcEEEEEccC-----
Q 014154 239 ----------------VRLYDTSAQRRP-VMSFDF--RETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRT----- 289 (430)
Q Consensus 239 ----------------i~iwd~~~~~~~-~~~~~~--~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~----- 289 (430)
|++|++.++... ...+.. |...+..+.|+|||++|+.++. +..|++||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999876532 233333 3455789999999999988765 57899999986
Q ss_pred -Ce-EEeeeeCCCCCCeEEEEecCCCCeEEEEeCC----CcEEEEECCCCce--eeEEEeeccccceEEeeeccccccc-
Q 014154 290 -GK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQL--LSAVFLKQHLNEVVFDSAFADKEVA- 360 (430)
Q Consensus 290 -~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~- 360 (430)
+. ....+..+ ...+.. .|+|+|..|+..+.+ +.|.+||+.++.. ...+ ........+..++|++++.+
T Consensus 274 ~~~~~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 274 TGILKWVKLIDN-FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL-VPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp CSSCCCEEEECS-SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSSCEEEEEEEETTTEEE
T ss_pred CCccceEEeeCC-CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec-cCCCCCCeEEEEEEEcCCEEE
Confidence 53 34556655 444544 488999887766653 3699999987642 2332 22222235788899877777
Q ss_pred cccCCCCce--EecCC
Q 014154 361 NAAADAPML--EIQNG 374 (430)
Q Consensus 361 ~~~~~d~~i--~~~~~ 374 (430)
++...++.. .+|+.
T Consensus 351 ~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEEETTEEEEEEEET
T ss_pred EEEEECCEEEEEEEEC
Confidence 667777754 44554
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=1.6e-12 Score=117.51 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=132.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC-CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
..+..+++++...++++|+.+ .+.+|++...+....-... .........+. |+.++| ++..|+++ .++.|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEE
Confidence 368899999999999999998 5677987543310000000 00000112235 899999 78899998 8899999
Q ss_pred EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
||+.+... ......|...+.++.+.+. .+++++.||.|.+||+.+++... + ...|++++|||+| ++.|..
T Consensus 111 ~dv~sl~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 111 LDLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp EESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECSSE--EEEEET
T ss_pred EEchhhhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcCCc--eEEEEc
Confidence 99987553 5566677788888877654 38888999999999999887653 2 4589999999999 678899
Q ss_pred CCcEEEEECCCCce--eeEEEe----e---ccccceEEeeeccccccc
Q 014154 322 DSYLRFWDIKTRQL--LSAVFL----K---QHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 322 dg~i~iwd~~~~~~--~~~~~~----~---~~~~~~v~~~~~s~~g~~ 360 (430)
||.+++|+...++. ..++.. . +| ...|.++.|.+++.+
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDF 227 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeE
Confidence 99999999887775 445321 2 23 456899999999987
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.44 E-value=9.8e-11 Score=104.19 Aligned_cols=198 Identities=12% Similarity=0.050 Sum_probs=135.8
Q ss_pred CceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----
Q 014154 163 GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---- 236 (430)
Q Consensus 163 ~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---- 236 (430)
..+..++++++ +++++ ++..+.|.+||.. ++.... ...... .....+.++++ .++++++++...+
T Consensus 71 ~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~-----~~~~~~~~i~~--d~~g~l~v~~~~~~~~~ 141 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEG-----RRMQGCNDCAF--DYEGNLWITAPAGEVAP 141 (314)
T ss_dssp CCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTS-----CBCBCCCEEEE--CTTSCEEEEECBCBCTT
T ss_pred CCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCC-----ccccCCcCEEE--CCCCCEEEEecCccccc
Confidence 56889999998 65444 4545589999998 654322 111110 01145788899 8889887776554
Q ss_pred -----------CcEEEEECCCCCcceEEEeecCCCeEEEEec----CCCCEEEEE-eCCCcEEEEEcc-CCeE-----Ee
Q 014154 237 -----------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEE----PDSFNIYIG-NGSGDLASVDIR-TGKL-----LG 294 (430)
Q Consensus 237 -----------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s----p~~~~l~~~-~~d~~i~iwd~~-~~~~-----~~ 294 (430)
+.|..||.. +. ...+..+......++|+ |+++.|+++ ..++.|.+||+. +++. ..
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~ 218 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG 218 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred ccccccccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence 567777765 33 23333333457889999 999766555 467899999986 4542 23
Q ss_pred eeeCCCC-CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc-c-cccCCCCceEe
Q 014154 295 CFIGKCS-GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEI 371 (430)
Q Consensus 295 ~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~ 371 (430)
.+..+ . ..+..++++++|.++++...++.|.+||..+++.+..+. .+ ...+.+++|+|+|. + ++...++.|..
T Consensus 219 ~~~~~-~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 219 HIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CP-FEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp ECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CS-SSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ECCCC-CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CC-CCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence 33333 2 568899999999988888788899999998787776643 23 24468999999998 4 56666788998
Q ss_pred cCCCC
Q 014154 372 QNGND 376 (430)
Q Consensus 372 ~~~~~ 376 (430)
|+...
T Consensus 295 ~~~~~ 299 (314)
T 1pjx_A 295 FEWQR 299 (314)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 88754
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=1e-10 Score=105.16 Aligned_cols=272 Identities=12% Similarity=0.059 Sum_probs=176.3
Q ss_pred CCCCceeEEeec-----CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154 62 SQNDPLLAVARK-----NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 62 ~p~g~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
.|+++.+++... ++.|.+.|..+++.+..+..- . .+ .+.+.+... .++.+.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG----~----~P--~va~spDG~--------~lyVan~~~~r~ 102 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----F----LP--NPVVADDGS--------FIAHASTVFSRI 102 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----S----SC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC----C----CC--cEEECCCCC--------EEEEEccccccc
Confidence 688888888765 689999999999988887641 1 12 244444332 343332
Q ss_pred ----cCCeeEEEEeeecCccccCCCcceEEeeecC------CCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE
Q 014154 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW 198 (430)
Q Consensus 131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~ 198 (430)
.++.+.+|+..... .+..+.+.. +.....++++|++++++++.. ++.|.++|+.+++.+.
T Consensus 103 ~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 103 ARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 24567777654322 333333321 224556899999999998864 6899999999999988
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec----CCCeE-EEEec-CCCCE
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIK-AVAEE-PDSFN 272 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~-~~~~s-p~~~~ 272 (430)
++.... . ...+ +...+.+++.+.||.+.+.++............+ ..++. ...|. ++|++
T Consensus 175 tI~v~g-----------~-~~~~--P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~ 240 (386)
T 3sjl_D 175 MLDVPD-----------C-YHIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 240 (386)
T ss_dssp EEECCS-----------E-EEEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEECCC-----------c-ceee--cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence 875421 1 1233 3445677788889999999987632222222111 11222 23553 67765
Q ss_pred EEEEeCCCcEEEEEccCCe--EEeeee---------CCCCCCeEEEEecCCCCeEEEEeC----------CCcEEEEECC
Q 014154 273 IYIGNGSGDLASVDIRTGK--LLGCFI---------GKCSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIK 331 (430)
Q Consensus 273 l~~~~~d~~i~iwd~~~~~--~~~~~~---------~~~~~~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~~ 331 (430)
++ .+.+|.|++.|+.+.. .+..+. +-.......++++|++..|+.... .+.|.++|+.
T Consensus 241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~ 319 (386)
T 3sjl_D 241 VW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 319 (386)
T ss_dssp EE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence 55 5568999999997654 333332 100223445778999988877643 2579999999
Q ss_pred CCceeeEEEeeccccceEEeeecccccc-c--cccCCCCceEecCCCCCc
Q 014154 332 TRQLLSAVFLKQHLNEVVFDSAFADKEV-A--NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~--~~~~~d~~i~~~~~~~~~ 378 (430)
+++.+..+.+.. .++++++++|++ + ++...++.|.++|.....
T Consensus 320 t~kv~~~i~vg~----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 320 TGERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TCCEEEEEEEEE----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCeEEEEEECCC----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 999999976543 368999999997 4 334568999999987644
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=5.4e-10 Score=98.67 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=137.9
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
.+++...++.+..|+... +.+..+.. ...+.++++++++++++ +. ++.|.+||.++++.........
T Consensus 27 l~~~d~~~~~i~~~d~~~---------~~~~~~~~--~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFT---------KQVQRVTM--DAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp EEEEETTTTEEEEEETTT---------CCEEEEEC--SSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCT
T ss_pred EEEEECCCCEEEEEECCC---------CcEEEEeC--CCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCC
Confidence 455556667777776432 23445543 46789999999999555 44 5689999998876543222111
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEE
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI 275 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 275 (430)
.. ....++.+++ +|+|+++++.... ..-.||.+..... +..+..+......++|+|+++.|+.
T Consensus 94 ~~-----~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 94 DK-----KNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp TC-----SSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEE
T ss_pred CC-----CCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEE
Confidence 10 1145788898 8899876654321 2234444443222 2233333345689999999987755
Q ss_pred E-eCCCcEEEEEc--cCCeE-----EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccc
Q 014154 276 G-NGSGDLASVDI--RTGKL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE 347 (430)
Q Consensus 276 ~-~~d~~i~iwd~--~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 347 (430)
+ +.++.|.+||+ .++.. ...+..+ ...+..++++++|.+.++....+.|.+||..+++.+..+.+ + ..
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~--p-~~ 241 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL--P-VD 241 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC--S-SS
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC--C-CC
Confidence 4 55788999987 45543 2223332 45678999999998877777788899999999999888543 3 23
Q ss_pred eEEeeecc-ccccc
Q 014154 348 VVFDSAFA-DKEVA 360 (430)
Q Consensus 348 ~v~~~~~s-~~g~~ 360 (430)
.+++++|. |+++.
T Consensus 242 ~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 242 KTTSCCFGGKNYSE 255 (297)
T ss_dssp BEEEEEEESGGGCE
T ss_pred CceEEEEeCCCCCE
Confidence 46899998 78765
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.2e-10 Score=103.60 Aligned_cols=239 Identities=9% Similarity=0.012 Sum_probs=149.7
Q ss_pred eeeecCCCCCceeEE-------eecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE
Q 014154 56 AASIDDSQNDPLLAV-------ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT 128 (430)
Q Consensus 56 ~~~~~~~p~g~~l~~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 128 (430)
.+.+ .++|.++++ +..++.|.+||..+++....... ........+.++.+.+.. +.+..
T Consensus 22 ~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~~~~~--------g~l~v 87 (314)
T 1pjx_A 22 GPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----EVNGYGGIPAGCQCDRDA--------NQLFV 87 (314)
T ss_dssp EEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----EETTEECCEEEEEECSSS--------SEEEE
T ss_pred CceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----ccCCCCCCCceEEEecCC--------CcEEE
Confidence 4445 467877777 57789999999877764322110 000011244445543221 24444
Q ss_pred EccCCeeEEEEeeecCccccCCCcceEEe-e-e---cCCCceEEEEEcCCCCEEEEEeCC---------------CeEEE
Q 014154 129 CTTKGKASMRSIEVTKVSAESSCSTVKSW-N-V---CASGTIAFSKVDISEKFSLFGGKG---------------VEVNV 188 (430)
Q Consensus 129 ~~~~g~~~v~~~~~~~~~~~~~~~~i~~~-~-~---~~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~~ 188 (430)
+...+.+.+|+.. . .+..+ . . .....+.+++++++++++++...+ +.|..
T Consensus 88 ~~~~~~l~~~d~~-g---------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-G---------TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp EETTTEEEEEETT-S---------CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred EECCCCEEEEeCC-C---------CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence 4444456666543 1 22222 1 1 112357899999999887776554 56777
Q ss_pred EECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec----CCCCEEEEE-eCCCcEEEEECC-CCCc----ceEEEeecC
Q 014154 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI----DDHRKFVAG-TNDHQVRLYDTS-AQRR----PVMSFDFRE 258 (430)
Q Consensus 189 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~s~-~~dg~i~iwd~~-~~~~----~~~~~~~~~ 258 (430)
|+.. ++....... ......+++ + ++++.|+.+ ..++.|.+||+. .+.. ....+..+.
T Consensus 158 ~~~~-g~~~~~~~~----------~~~~~~i~~--~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 158 FTTD-GQMIQVDTA----------FQFPNGIAV--RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp ECTT-SCEEEEEEE----------ESSEEEEEE--EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred ECCC-CCEEEeccC----------CCCcceEEE--ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 7765 443322111 133567788 7 888665554 567899999976 3221 112223332
Q ss_pred -CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE-EEeCCCcEEEEECCC
Q 014154 259 -TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKT 332 (430)
Q Consensus 259 -~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~iwd~~~ 332 (430)
..+..++++++|+++++...++.|.+||..+++.+..+..+ ...+.+++|+|++..|+ +...++.|..|++..
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 56788999999988888778899999999878776677665 57899999999998554 445667899999864
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=4.1e-09 Score=92.79 Aligned_cols=266 Identities=8% Similarity=0.020 Sum_probs=161.2
Q ss_pred cceeeec-CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 15 LRALTFD-SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 15 ~~l~t~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
.+++.++ .++.|.+|+.. + ++.. +...........+.. .++|.++++...++.|..||.. ++. ..+..
T Consensus 31 g~l~v~~~~~~~v~~~~~~-~-----~~~~-~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~ 99 (300)
T 2qc5_A 31 GKVWFTQHKANKISSLDQS-G-----RIKE-FEVPTPDAKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGF-TEYPL 99 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-S-----CEEE-EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCE-EEEEC
T ss_pred CCEEEEcCCCCeEEEECCC-C-----ceEE-EECCCCCCcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCe-EEecC
Confidence 4455554 56788888877 4 3322 211111223455556 5778777766667899999986 553 22221
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcC
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDI 172 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~ 172 (430)
. .....+..+.+-+. . ..+++...++.+..++.. +.+..+... ....+..+++++
T Consensus 100 ~------~~~~~~~~i~~~~~-g-------~l~v~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~d~ 155 (300)
T 2qc5_A 100 P------QPDSGPYGITEGLN-G-------DIWFTQLNGDRIGKLTAD----------GTIYEYDLPNKGSYPAFITLGS 155 (300)
T ss_dssp S------STTCCEEEEEECST-T-------CEEEEETTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECT
T ss_pred C------CCCCCCccceECCC-C-------CEEEEccCCCeEEEECCC----------CCEEEccCCCCCCCceeEEECC
Confidence 0 01134444554322 1 244444445666665432 244444333 345688999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
++++.++...++.|..||. +++... +.... ....+..+++ .+++.+.++....+.|.+||. ++.....
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~-------~~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TGKLEE-YPLPT-------NAAAPVGITS--GNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEE-EECSS-------TTCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCCEEEEecCCCeEEEECC-CCcEEE-eeCCC-------CCCCcceEEE--CCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 9996666666788999998 444432 21111 0145788888 788887777666778999998 3332122
Q ss_pred EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE-eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.+..+...+.++++++++++.++...++.|..||. +++.. ..+... ...+.++++.++|.+.++.. . .|..+|.+
T Consensus 224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 22334567899999999986666656789999998 45443 223322 45688999999998665544 4 67777653
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=8.5e-11 Score=117.47 Aligned_cols=196 Identities=10% Similarity=-0.020 Sum_probs=131.8
Q ss_pred EEEEEcCCCCEEEEEeCCCe--------------EEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154 166 AFSKVDISEKFSLFGGKGVE--------------VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~--------------i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (430)
..++|+|+ +.|+.++.++. |++|++.++.. ...+.... +...+..+.| +|+|++
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~~--SpDG~~ 281 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE-------LPKRGHGASV--SSDGRW 281 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTSCE
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC-------CCeEEEEEEE--CCCCCE
Confidence 46889999 99988876654 89999977652 12222211 1135778888 899998
Q ss_pred EEEEeCCC-----cEEEEECCCCCcc-eEEEeecCCCeEEEEecCCCCEEEEEeCC----CcEEEEEccCC--eEEeeee
Q 014154 230 FVAGTNDH-----QVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTG--KLLGCFI 297 (430)
Q Consensus 230 l~s~~~dg-----~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~--~~~~~~~ 297 (430)
|+..+.++ .|++||+.++... ...+..+...+.... +|+++.|+..+.+ +.|.+||+.++ +....+.
T Consensus 282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 88877544 8999999875222 455555555555553 4889888887764 45999999874 3333343
Q ss_pred CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEeeeccccccc-c----ccCCCCceEe
Q 014154 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEVA-N----AAADAPMLEI 371 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~----~~~~d~~i~~ 371 (430)
.+ ...+..+.|+ ++.++++...|+..+||.+. +++.+..+ ..+....+..++++|++.. + +....+.+.+
T Consensus 361 ~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 361 ES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAV--SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp CC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEEC--BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred CC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeec--cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 33 5567778887 56678888889987777554 45555553 2222345688999999875 3 3345688999
Q ss_pred cCCCC
Q 014154 372 QNGND 376 (430)
Q Consensus 372 ~~~~~ 376 (430)
|+...
T Consensus 437 ~d~~t 441 (741)
T 1yr2_A 437 LDPAT 441 (741)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98765
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=6.5e-10 Score=101.83 Aligned_cols=275 Identities=13% Similarity=0.047 Sum_probs=167.6
Q ss_pred CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCcccceeec
Q 014154 24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~ 93 (430)
+.|.+.|..+. +++.++..-..+ .+.+ +|||++|+++. .++.|.++|..+++.+..+..
T Consensus 99 ~~VsVID~~t~-----~vv~~I~vG~~P----gia~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTG-----RILGMTDGGFLP----HPVA--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTT-----EEEEEEEECSSC----EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCC-----EEEEEEECCCCC----ceEE--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 79999999997 777666533333 3444 78888888876 467899999999988777653
Q ss_pred cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
-....+... .....+.+.+.. ..++.+.. ++.+.|.++.... .+..+.+. +. ....
T Consensus 168 ~g~~r~~~g-~~P~~~~~spDG--------k~lyV~n~~~~~~VsVID~~t~k--------vv~~I~v~--g~---~~~~ 225 (426)
T 3c75_H 168 PDAPRFLVG-TYQWMNALTPDN--------KNLLFYQFSPAPAVGVVDLEGKT--------FDRMLDVP--DC---YHIF 225 (426)
T ss_dssp TTCCCCCBS-CCGGGSEECTTS--------SEEEEEECSSSCEEEEEETTTTE--------EEEEEECC--SE---EEEE
T ss_pred CCccccccC-CCcceEEEcCCC--------CEEEEEecCCCCeEEEEECCCCe--------EEEEEEcC--Cc---eeec
Confidence 100000000 011112232222 24444332 4566666654322 23333321 11 1223
Q ss_pred CC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154 172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP 250 (430)
Q Consensus 172 ~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 250 (430)
|+ ...+++.+.||.+.+.++.+++...... . .+..........+.| .+++..++..+..+.|.+.|+......
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~--~~dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAF--SLRSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEE--CTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeee--cCCCCEEEEEeCCCcEEEEeccCCceE
Confidence 32 3556667778888888885555443211 0 000000011123456 778887777788899999998753310
Q ss_pred e-EEEee----------cCCCeEEEEecCCCCEEEEEeC----------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154 251 V-MSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 251 ~-~~~~~----------~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
+ ..+.. .......++++|+++.+++... ++.|.++|+.+.+.+.++... .....+.|
T Consensus 300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~ 377 (426)
T 3c75_H 300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINV 377 (426)
T ss_dssp ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEE
T ss_pred EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEE
Confidence 0 11110 0012223689999988877653 357999999999999999763 46899999
Q ss_pred cCCCC-eEEEEe-CCCcEEEEECCCCceeeEE
Q 014154 310 HPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 310 ~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 339 (430)
+|+++ +++++. .++.|.|+|+.+++.+.++
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99998 888887 5899999999999999885
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=1.7e-10 Score=115.30 Aligned_cols=239 Identities=11% Similarity=-0.012 Sum_probs=146.2
Q ss_pred eeeeeecCCCCCceeEEeecC-----CeEEEecCCCCccccee-ecc--CCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154 54 VLAASIDDSQNDPLLAVARKN-----GLTDILNPLNGDLRVAI-SNA--GDSGAQPEDDGIVGLHLFKRQREESSSRSRT 125 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 125 (430)
+..+.| +|||++||.+..+ ..|++||+.+++.+... ... ....+++. + .
T Consensus 165 ~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~--------------------~ 221 (741)
T 1yr2_A 165 LDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D--------------------A 221 (741)
T ss_dssp EEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S--------------------E
T ss_pred EEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-C--------------------E
Confidence 455666 8999999887644 46999999988865431 111 12222222 2 2
Q ss_pred EEEEccC--------------CeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCC-----e
Q 014154 126 LLTCTTK--------------GKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGV-----E 185 (430)
Q Consensus 126 ~~~~~~~--------------g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~-----~ 185 (430)
++.+..+ ..+.+|.+.... .....++.... ...+..+.|+|+|++|+..+.++ .
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 2222222 235555543211 11233444322 23478899999999998877544 8
Q ss_pred EEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEECCCC-CcceEEEeecC
Q 014154 186 VNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQ-RRPVMSFDFRE 258 (430)
Q Consensus 186 i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~-~~~~~~~~~~~ 258 (430)
|++||+.++ +....+..+. ..+... + .|++..|+..+.+ +.|.+||+.++ ......+..+.
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~---------~~~~~~-~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 363 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDL---------KAQWDF-V--DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK 363 (741)
T ss_dssp EEEEEEETTEECCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS
T ss_pred EEEEECCCCCCcccEEecCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC
Confidence 999999876 3123333222 122222 2 3678888777764 45999999874 23334444455
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCCCeEEEE----eCCCcEEEEECCCC
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTR 333 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~----~~dg~i~iwd~~~~ 333 (430)
..+..+.++ ++.++++...|+..+||.+. +++....+..+....+..+.++|++..|+.. ...++|++||+.++
T Consensus 364 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 364 DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 567778887 56678888888887777554 4566666654325678899999998766533 23478999999887
Q ss_pred c
Q 014154 334 Q 334 (430)
Q Consensus 334 ~ 334 (430)
+
T Consensus 443 ~ 443 (741)
T 1yr2_A 443 K 443 (741)
T ss_dssp E
T ss_pred c
Confidence 6
No 213
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.35 E-value=2.2e-10 Score=102.67 Aligned_cols=295 Identities=13% Similarity=0.059 Sum_probs=182.4
Q ss_pred CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154 13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS 92 (430)
Q Consensus 13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~ 92 (430)
....++.++.++.|..|| .++ +.+..+..+... +.++.. .++|. |.+++.+ |..+|. +++.+..+.
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g-----~~~~~~~~~~~~--~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDG-----SVKWFFKSGEII--ECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTS-----CEEESSCGGGEE--EECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred cCCeEEEEcCCCEEEEEC-CCC-----cEEEEEecCCCc--ccceEE--ecCCc-EEEecCc--EEEECC-CCcEEEEEE
Confidence 356788888899999999 665 444333322221 233333 33454 5555554 888886 666655443
Q ss_pred ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEc
Q 014154 93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVD 171 (430)
Q Consensus 93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~ 171 (430)
... .......+. . +.+..++.++.+..++.. . . ..|.... ...+.++...
T Consensus 95 ~~~--------~~~~~~~~~---~-------~~l~v~t~~~~l~~~d~~-g---------~-~~~~~~~~~~~~~~~~~~ 145 (330)
T 3hxj_A 95 TKK--------AIVSDFTIF---E-------DILYVTSMDGHLYAINTD-G---------T-EKWRFKTKKAIYATPIVS 145 (330)
T ss_dssp C-------------CCEEEE---T-------TEEEEECTTSEEEEECTT-S---------C-EEEEEECSSCCCSCCEEC
T ss_pred CCC--------CcccCceEE---C-------CEEEEEecCCEEEEEcCC-C---------C-EEEEEcCCCceeeeeEEc
Confidence 210 011111111 2 577777777777666533 1 2 2333322 2334556666
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 251 (430)
+++. |+.++.++.|..||.. ++..+.+.... ..+.++.+ .+++.+.+ ++ +.|..|| .++.. .
T Consensus 146 ~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--d~~g~l~v-~t--~~l~~~d-~~g~~-~ 207 (330)
T 3hxj_A 146 EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND---------AITSAASI--GKDGTIYF-GS--DKVYAIN-PDGTE-K 207 (330)
T ss_dssp TTSC-EEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CTTCCEEE-ES--SSEEEEC-TTSCE-E
T ss_pred CCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC---------CceeeeEE--cCCCEEEE-Ee--CEEEEEC-CCCcE-E
Confidence 6666 5567888999999998 77776665332 33555556 56666444 44 8899999 55443 4
Q ss_pred EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.........+.++...+++ .|++++.++.|..+|. +++.+..+... ...+..+.+.+++ .|..++.+|.|..+|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~- 282 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGNTD-TIYFGSYDGHLYAINP- 282 (330)
T ss_dssp EEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECTTS-CEEEECTTCEEEEECT-
T ss_pred EEEccCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcCCC-eEEEecCCCCEEEECC-
Confidence 4555455668888888877 5666777888888884 66666666654 3444556666566 5677788888999996
Q ss_pred CCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 332 TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
+++.+..+.+. ...+.++...++|.+..++.+|.+.+.....
T Consensus 283 ~g~~~~~~~~~---~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 283 DGTEKWNFETG---SWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TSCEEEEEECS---SCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred CCcEEEEEEcC---CccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 67777664332 3345677777899998899999999876655
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=2.7e-11 Score=109.43 Aligned_cols=168 Identities=10% Similarity=0.022 Sum_probs=117.7
Q ss_pred ceEEEEccCCeeEEEEeeecCcccc---CCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA 200 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~---~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 200 (430)
+.+++++.+ .+.||++..-..+.. ......... .... |..++| ++++|+++ .++.|++||+.+.......
T Consensus 50 gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~ 122 (388)
T 1xip_A 50 SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV 122 (388)
T ss_dssp TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE
T ss_pred CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc
Confidence 477777766 555687643221000 001122222 3345 999999 89999998 8899999999765543333
Q ss_pred CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154 201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 280 (430)
..+. ..+.++.+. .| .+++++.||.|.+||+.++.. . . +...|+|++|||+| ++.|..||
T Consensus 123 ~~~~---------~~v~~i~~~-~p---~~av~~~dG~L~v~dl~~~~~-~-~---~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 123 TSFE---------KPVFQLKNV-NN---TLVILNSVNDLSALDLRTKST-K-Q---LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp EECS---------SCEEEEEEC-SS---EEEEEETTSEEEEEETTTCCE-E-E---EEESEEEEEECSSE--EEEEETTS
T ss_pred ceee---------cceeeEEec-CC---CEEEEECCCCEEEEEccCCcc-c-c---ccCCceEEEEcCCc--eEEEEcCC
Confidence 3332 336677664 22 388889999999999997553 2 2 33589999999999 67899999
Q ss_pred cEEEEEccCCeE--Eeee------e---CCCCCCeEEEEecCCCCeEEEE
Q 014154 281 DLASVDIRTGKL--LGCF------I---GKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 281 ~i~iwd~~~~~~--~~~~------~---~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
.+++|+...++. ..++ . +| ...|.+|.|.+++.++++=
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEE
Confidence 999999988875 5566 2 24 6789999999999888764
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=2.3e-09 Score=98.96 Aligned_cols=224 Identities=9% Similarity=-0.071 Sum_probs=141.9
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEeeCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKP 202 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~ 202 (430)
.+++...++.+++|+... +.+..+... ..... ++|+++++.|+++..++ .|.+|+...+.....+..
T Consensus 144 lyv~d~~~~~I~~id~~~---------g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDD---------NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp EEEEETTTTEEEEEETTT---------TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred EEEEecCCCcEEEEECCC---------CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence 444445556777776431 244444322 23334 89999999999888766 799998876544333300
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-----eecCCCe--EEEEecCC-CCEEE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPI--KAVAEEPD-SFNIY 274 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i--~~~~~sp~-~~~l~ 274 (430)
... .....+.++++ +|++..|+.+..++.|+.||+.++. ...+ .++...- ..++|+|+ +.+++
T Consensus 213 ~~~-----~~~~~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 213 LGS-----TFSGKIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp CCT-----TSCSCCCBCEE--CTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ccc-----hhcCCcEEEEE--eCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 000 01145678899 7844455557778899999998754 2333 1121222 39999995 55555
Q ss_pred EEeCCCcEEEEEccCCeEEeeeeCCC--------------CCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEE
Q 014154 275 IGNGSGDLASVDIRTGKLLGCFIGKC--------------SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 275 ~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 339 (430)
+-..++.|+.|+.... +..+.++. -.....++++|+|.++++-. .++.|+.|++.++.....
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~- 360 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV- 360 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE-
T ss_pred EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE-
Confidence 5566789999997543 23333321 13478999999999777777 789999999877764432
Q ss_pred Eeeccc--------------cceEEeeeccccccc-cccCCCCceEecC
Q 014154 340 FLKQHL--------------NEVVFDSAFADKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 340 ~~~~~~--------------~~~v~~~~~s~~g~~-~~~~~d~~i~~~~ 373 (430)
.++. -.....++++++|.+ ++-...+.|+.+.
T Consensus 361 --~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 361 --AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp --EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred --eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 2220 022578999999887 7777777777654
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.31 E-value=5.1e-10 Score=102.53 Aligned_cols=273 Identities=10% Similarity=0.005 Sum_probs=173.7
Q ss_pred CCCCceeEEeecC-----CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154 62 SQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------ 130 (430)
Q Consensus 62 ~p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------ 130 (430)
.|+++++++.... +.|.++|..+++.+..+..- ..+ .+.+.+... .++.+.
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--------~~P--gia~SpDgk--------~lyVan~~~~~~ 142 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--------FLP--HPVAAEDGS--------FFAQASTVFERI 142 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--------SSC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--------CCC--ceEECCCCC--------EEEEEecccccc
Confidence 4666766665442 79999999999988887641 112 455544433 444333
Q ss_pred ----cCCeeEEEEeeecCccccCCCcceEEeeec------CCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE
Q 014154 131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW 198 (430)
Q Consensus 131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~ 198 (430)
.++.+.+++..... .+....+. .......+.++|++++|+++.. ++.|.++|+.+.+.+.
T Consensus 143 ~~G~~~~~VsviD~~t~~--------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~ 214 (426)
T 3c75_H 143 ARGKRTDYVEVFDPVTFL--------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR 214 (426)
T ss_dssp TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred ccCCCCCEEEEEECCCCc--------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence 34566666644221 23333222 1233456899999999998864 5789999999999888
Q ss_pred eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE----EeecCCCe-EEEEecCCCCEE
Q 014154 199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS----FDFRETPI-KAVAEEPDSFNI 273 (430)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~i-~~~~~sp~~~~l 273 (430)
++.... . .... +.....+++.+.||.+.+.++.+++. ... +.....++ ..+.|.+++..+
T Consensus 215 ~I~v~g-----------~--~~~~-p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 215 MLDVPD-----------C--YHIF-PASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp EEECCS-----------E--EEEE-EEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred EEEcCC-----------c--eeec-cCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 766421 1 1121 11235666777888888888854332 221 11111221 235678998888
Q ss_pred EEEeCCCcEEEEEccCCeEE--eeeeC---C------CCCCeEEEEecCCCCeEEEEeC----------CCcEEEEECCC
Q 014154 274 YIGNGSGDLASVDIRTGKLL--GCFIG---K------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIKT 332 (430)
Q Consensus 274 ~~~~~d~~i~iwd~~~~~~~--~~~~~---~------~~~~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~~~ 332 (430)
+..+..+.|.+.|+...... ..+.. . .......++++|++..++.... ++.|.++|+.+
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 87788899999998765431 11110 0 0112223689999987776642 35799999999
Q ss_pred CceeeEEEeeccccceEEeeecccccc-c-cccC-CCCceEecCCCCCcc
Q 014154 333 RQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAA-DAPMLEIQNGNDTQE 379 (430)
Q Consensus 333 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~-~d~~i~~~~~~~~~~ 379 (430)
++.+.++.+.. ..++++|+|||+ + ++.. .++.|.++|......
T Consensus 360 ~kvv~~I~vg~----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 360 GERINKIELGH----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CCEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CeEEEEEECCC----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 99999975543 258899999998 5 4444 589999999877543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=9.3e-09 Score=91.96 Aligned_cols=207 Identities=8% Similarity=-0.032 Sum_probs=134.9
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
.+++...++.+..|+.. .+.++.|.. ...+.+++++++++++++. .+ .|.+||..+++.........
T Consensus 63 l~~~d~~~~~i~~~d~~---------~~~~~~~~~--~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 63 AWWFNILERELHELHLA---------SGRKTVHAL--PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp EEEEEGGGTEEEEEETT---------TTEEEEEEC--SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSST
T ss_pred EEEEECCCCEEEEEECC---------CCcEEEEEC--CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC
Confidence 55566667777777643 124455543 4678999999998877654 44 59999998776543222111
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEEEeC------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-e
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-N 277 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~ 277 (430)
. .....+..+++ +|+|+++++... .+.|..++ +++ +..+..+......++|+|+++.|+.+ +
T Consensus 130 ~-----~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 130 D-----LPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp T-----CTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred C-----CCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 0 01145788899 889987665442 24566666 333 23333333457899999999877655 4
Q ss_pred CCCcEEEEEcc--CC-e-----EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceE
Q 014154 278 GSGDLASVDIR--TG-K-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV 349 (430)
Q Consensus 278 ~d~~i~iwd~~--~~-~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 349 (430)
.++.|.+||+. ++ + ....+... ...+..+++.++|.+.++...++.|.+||. +++.+..+.+ + ...+
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~--~-~~~~ 273 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV--P-GKQT 273 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC--S-CSBE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC--C-CCCc
Confidence 56889999986 55 3 22233322 456788999999987777766788999998 5777766432 3 2346
Q ss_pred Eeeecc-ccccc
Q 014154 350 FDSAFA-DKEVA 360 (430)
Q Consensus 350 ~~~~~s-~~g~~ 360 (430)
.+++|+ +++..
T Consensus 274 ~~~af~g~d~~~ 285 (326)
T 2ghs_A 274 TCPAFIGPDASR 285 (326)
T ss_dssp EEEEEESTTSCE
T ss_pred EEEEEecCCCCE
Confidence 899998 88664
No 218
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.28 E-value=1.5e-09 Score=101.90 Aligned_cols=265 Identities=11% Similarity=0.029 Sum_probs=171.4
Q ss_pred eEEeecCCeEEEecCCCCcccceeeccCCCCCCC---------------------------------CCCceEEEEEeec
Q 014154 68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP---------------------------------EDDGIVGLHLFKR 114 (430)
Q Consensus 68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~~~~~~ 114 (430)
+.+|+..|.|+|+-+.+++.+..+..+++....+ ++..-..+..-+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5668889999999999998888877644433221 0000111222111
Q ss_pred CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE-c-CCCCEEEEEe-----------
Q 014154 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-D-ISEKFSLFGG----------- 181 (430)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~-~~~~~l~~~~----------- 181 (430)
.. ..+-.++....++.+.+.++.... .+++..+........+++ + |++.++++++
T Consensus 98 ~~----DG~~lfVnd~~~~rVavIdl~t~~--------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 98 KY----DGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EE----EEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred Cc----CCCEEEEEcCCCCEEEEEECCCce--------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 11 011233444445567777665332 455556666677889998 5 8999998885
Q ss_pred -------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----------------
Q 014154 182 -------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----------------- 237 (430)
Q Consensus 182 -------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----------------- 237 (430)
.++.+.+.|.++.+..+++.... ....+++ +|++.++++.+.+.
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg----------~pd~~~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG----------NLDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESS----------CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCC----------CccceEE--CCCCCEEEEEecCcccCcchhhccccccceE
Confidence 34579999999988888765421 1234456 78888888877553
Q ss_pred ---------------------cEEEEECCC--CCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCe--
Q 014154 238 ---------------------QVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK-- 291 (430)
Q Consensus 238 ---------------------~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~-- 291 (430)
.|.+.|..+ +...+..+... ....++.++|||+++++++ .+++|.++|+.+.+
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 477777776 33224445433 3557899999999887766 67899999998653
Q ss_pred ----------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC----------CceeeEEEee---ccccce
Q 014154 292 ----------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT----------RQLLSAVFLK---QHLNEV 348 (430)
Q Consensus 292 ----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~---~~~~~~ 348 (430)
.+.++.. ......++|+|+|...++.-.|+.|.+||+.+ .+.+.++... +| ...
T Consensus 313 ~~~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh-~~~ 389 (595)
T 1fwx_A 313 FYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH-LKT 389 (595)
T ss_dssp HHSCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-EEE
T ss_pred cccccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-cee
Confidence 3444443 45688999999994445566899999999987 5566665432 33 111
Q ss_pred EEeeeccccccc
Q 014154 349 VFDSAFADKEVA 360 (430)
Q Consensus 349 v~~~~~s~~g~~ 360 (430)
...+.++|||++
T Consensus 390 ~~g~t~~~DGk~ 401 (595)
T 1fwx_A 390 VMGETLDATNDW 401 (595)
T ss_dssp TTTTSTTCCSSE
T ss_pred ccceEeCCCCCE
Confidence 235578999998
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=6.7e-09 Score=95.82 Aligned_cols=239 Identities=11% Similarity=0.071 Sum_probs=148.2
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG 133 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 133 (430)
...+.+ .|+|+++++...++.|++||..++......... .... +.+ .... +.++.+..++
T Consensus 133 P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------~~~~-ia~-~~~g-------~~l~~~d~~~ 192 (409)
T 3hrp_A 133 MWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------KGGK-PAV-TKDK-------QRVYSIGWEG 192 (409)
T ss_dssp EEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------CBCB-CEE-CTTS-------SEEEEEBSST
T ss_pred ceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------CCCc-eeE-ecCC-------CcEEEEecCC
Confidence 345556 578887777777899999999776654333221 1111 233 2222 3566666555
Q ss_pred --eeEEEEeeecCccccCCCcceEEe-e--ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC-CCCCCC
Q 014154 134 --KASMRSIEVTKVSAESSCSTVKSW-N--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNS 207 (430)
Q Consensus 134 --~~~v~~~~~~~~~~~~~~~~i~~~-~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~ 207 (430)
.+.+++..... ..... . ......+.+++++|++..|+++..++.|+.||..++....... .....
T Consensus 193 ~~~I~~~d~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~- 263 (409)
T 3hrp_A 193 THTVYVYMKASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS- 263 (409)
T ss_dssp TCEEEEEEGGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-
T ss_pred CceEEEEEcCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-
Confidence 44444432110 11122 0 1134567889999966666667778899999998765432200 00000
Q ss_pred CCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecC---------------CCeEEEEecCCCC
Q 014154 208 LGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------TPIKAVAEEPDSF 271 (430)
Q Consensus 208 ~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~i~~~~~sp~~~ 271 (430)
.. ..+...++| +| ++.++++-..++.|+.|+.... +..+.++. .....++++|+|+
T Consensus 264 ~~---~~P~~~ia~--~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 264 LG---TNPGPYLIY--YFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp CC---CSSCCEEEE--ETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred CC---CCccccEEE--eCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 00 011128899 77 4666666677889999998752 33443332 3478999999999
Q ss_pred EEEEEe-CCCcEEEEEccCCeEEeeeeCC--------------CCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 272 NIYIGN-GSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 272 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
++++-. .++.|+.||+.++... .+.++ .-.....+++++++.++++-..++.|+.+++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 777777 7899999998788753 33332 0135789999999887787778888888765
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=3.8e-09 Score=93.54 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=133.4
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
.+++...++.+..|+. ++.+..+.. ....+..++++++++++++...++.|.+|+.+ ++.........
T Consensus 59 l~~~d~~~~~i~~~~~----------~g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~ 126 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE----------DGTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA 126 (305)
T ss_dssp EEEEETTTTEEEEEET----------TSCEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred EEEEECCCCEEEEEeC----------CCCEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence 4666667777777753 124455543 35678899999999977665566789999986 44322211111
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEE----EeC-------------CCcEEEEECCCCCcceEEEeecCCCeEEEEec
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GTN-------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s 267 (430)
.. ....+..+++ .++|.+.++ |.. .+.|..||..+++. . .+. .......++|+
T Consensus 127 ~~-----~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~-~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 127 GK-----RLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-Q-RMA-DLDHPNGLAFS 196 (305)
T ss_dssp TE-----ECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-E-EEE-EESSEEEEEEC
T ss_pred CC-----ccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-E-EEe-cCCCCcceEEc
Confidence 00 0134677888 889988886 332 25678888765542 2 222 33567889999
Q ss_pred CCCCEEEEEeCC------CcEEEEEccCCeEE--eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 268 PDSFNIYIGNGS------GDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 268 p~~~~l~~~~~d------~~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
|+++.|+++... +.|.+||+..+... ..+.......+..++++++|++.+ +..++ |.+|+. +++.+..+
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VCVFDS-DGQLLGHI 273 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EEEECT-TSCEEEEE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EEEECC-CCCEEEEE
Confidence 999988887665 78999998765421 112111134456789999998544 44554 999998 57777765
Q ss_pred EeeccccceEEeeeccccccc
Q 014154 340 FLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 340 ~~~~~~~~~v~~~~~s~~g~~ 360 (430)
.... .+.+++|++++..
T Consensus 274 ~~~~----~~~~~~f~~d~~~ 290 (305)
T 3dr2_A 274 PTPG----TASNCTFDQAQQR 290 (305)
T ss_dssp ECSS----CCCEEEECTTSCE
T ss_pred ECCC----ceeEEEEeCCCCE
Confidence 4322 3578899998876
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=6.2e-09 Score=95.16 Aligned_cols=260 Identities=10% Similarity=0.052 Sum_probs=159.8
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN 93 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 93 (430)
..+++.++.+|.|..+|..++ +.+-.+...........+ . +..+++++.++.|..+|..+|+.+..+..
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG-----~~~W~~~~~~~~~~~p~~-~-----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDG-----TVAWQTKVAGEALSRPVV-S-----DGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTC-----CEEEEEECSSCCCSCCEE-E-----TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCEEEEEECCCC-----CEEEEEeCCCceEcCCEE-E-----CCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 367888889999999999987 554333322211111111 1 23588888999999999999998877654
Q ss_pred cCCCC-CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc--------
Q 014154 94 AGDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT-------- 164 (430)
Q Consensus 94 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 164 (430)
..+.. ......++ +. . +.++.+..++.+..++..... .+|.......
T Consensus 172 ~~~~~~~~~~~~~~----~~---~-------~~v~~g~~~g~l~~~d~~tG~----------~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 172 DMPSLSLRGESAPT----TA---F-------GAAVVGGDNGRVSAVLMEQGQ----------MIWQQRISQATGSTEIDR 227 (376)
T ss_dssp CC-----CCCCCCE----EE---T-------TEEEECCTTTEEEEEETTTCC----------EEEEEECCC---------
T ss_pred CCCceeecCCCCcE----EE---C-------CEEEEEcCCCEEEEEECCCCc----------EEEEEecccCCCCccccc
Confidence 21100 00000111 11 1 466667777777666643221 1343321110
Q ss_pred eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 165 i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
+..+...| .+..+++++.++.+..+|..+++.++..... ....+.. ++..|+.++.++.|..+
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----------~~~~~~~----~~~~l~~~~~~g~l~~~ 292 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-----------SVNDFIV----DGNRIYLVDQNDRVMAL 292 (376)
T ss_dssp --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----------CEEEEEE----ETTEEEEEETTCCEEEE
T ss_pred ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----------CCCCceE----ECCEEEEEcCCCeEEEE
Confidence 00011111 3567888888999999999999998886542 2334444 46678888899999999
Q ss_pred ECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEe
Q 014154 243 DTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCG 320 (430)
Q Consensus 243 d~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~ 320 (430)
|..+++. +.... .....+...... +..|++++.+|.|.++|..+++.+..+... ...+.. ... .+..|+.++
T Consensus 293 d~~tG~~-~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~ 366 (376)
T 3q7m_A 293 TIDGGVT-LWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQA 366 (376)
T ss_dssp ETTTCCE-EEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEB
T ss_pred ECCCCcE-EEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEe
Confidence 9998764 44433 112223333332 468889999999999999999998877753 233322 222 245788889
Q ss_pred CCCcEEEEE
Q 014154 321 LDSYLRFWD 329 (430)
Q Consensus 321 ~dg~i~iwd 329 (430)
.+|.|+.|+
T Consensus 367 ~~G~l~~~~ 375 (376)
T 3q7m_A 367 KDGTVYSIT 375 (376)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEe
Confidence 999999987
No 222
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=1.1e-08 Score=100.49 Aligned_cols=300 Identities=12% Similarity=0.063 Sum_probs=173.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcc---------eeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC---------VLAASIDDSQNDPLLAVARKNGLTDILNPLNG 85 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~ 85 (430)
.+++.++.++.|.-+|+.++ +.+=++........ ...... .+..|++++.|+.|..+|..+|
T Consensus 67 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG 137 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASG-----KELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTG 137 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTC
T ss_pred CEEEEECCCCeEEEEECCCC-----hhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCC
Confidence 67888888999999999887 55544432211100 001111 2346888889999999999999
Q ss_pred cccceeeccCCC-CCCCCCCceEEEEEeecCcccccccCceEEEEcc------CCeeEEEEeeecCc-----cc-cCCC-
Q 014154 86 DLRVAISNAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKV-----SA-ESSC- 151 (430)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~~-----~~-~~~~- 151 (430)
+.+..+...... .......++. . . +.++.+.. +|.+..++...... .. +...
T Consensus 138 ~~~W~~~~~~~~~~~~~~~~P~v----~---~-------~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~ 203 (668)
T 1kv9_A 138 KAIWSQQTTDPAKPYSITGAPRV----V---K-------GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPAL 203 (668)
T ss_dssp CEEEEEECSCTTSSCBCCSCCEE----E---T-------TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred CEeeeeccCCCCCcceecCCCEE----E---C-------CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCc
Confidence 988877652110 0000111111 0 0 23443332 24444444322111 00 0000
Q ss_pred ----cce----------EEeee-cCCCceEEEEEcCCCCEEEEEeCCC-------------------eEEEEECCCCeee
Q 014154 152 ----STV----------KSWNV-CASGTIAFSKVDISEKFSLFGGKGV-------------------EVNVWDLDKCEKI 197 (430)
Q Consensus 152 ----~~i----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~-------------------~i~~~d~~~~~~~ 197 (430)
..+ .+|.. ........++++|...+++.++.++ .|..+|..+++.+
T Consensus 204 ~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 204 PYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA 283 (668)
T ss_dssp CCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred cccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee
Confidence 000 01110 0011123468888888999888776 3999999999999
Q ss_pred EeeCCCCCCCCCCcCCcceeEEEEeecCCCC---EEEEEeCCCcEEEEECCCCCcceEEEeecC------------CC--
Q 014154 198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE------------TP-- 260 (430)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~-- 260 (430)
+.++..............+....+ ..++. .++.++.+|.++++|..+++. +....... .+
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~~~~d~~~g~p~~ 360 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAEL--NIDGKPRKVLMQAPKNGFFYVLDRTNGKL-ISAEKFGKVTWAEKVDLATGRPVE 360 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCCSEEEECTTTCCEEE
T ss_pred eEeecCCCccccccCCCCcEEEEe--ccCCcEEEEEEEECCCCEEEEEECCCCCE-eccccccccccccccccccCCccc
Confidence 988653211111100111211122 12554 688899999999999998764 32222110 00
Q ss_pred ----------------------eEEEEecCCCCEEEEEe------------------------------------CCCcE
Q 014154 261 ----------------------IKAVAEEPDSFNIYIGN------------------------------------GSGDL 282 (430)
Q Consensus 261 ----------------------i~~~~~sp~~~~l~~~~------------------------------------~d~~i 282 (430)
-..++++|+..++++.. .+|.|
T Consensus 361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l 440 (668)
T 1kv9_A 361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL 440 (668)
T ss_dssp CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence 01267788777666521 23789
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK 342 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 342 (430)
..||+.+++.+.++..+ .+.....+...+.+++.++.|+.|++||.++++.+..+.+.
T Consensus 441 ~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 99999999998887653 23333344456778999999999999999999999886543
No 223
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.24 E-value=5.5e-09 Score=100.47 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=118.1
Q ss_pred EEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeeEeeCCCCCCCCCCc-CCcceeEEEEeecCCCC-
Q 014154 167 FSKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIF-TPTWFTSAAFLSIDDHR- 228 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~- 228 (430)
.+++++....++.+..+ +.|..+|..+++.++.++.......... ...++. +.. ..+++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~--~~~G~~ 315 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQ--PVNGKM 315 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE--EETTEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eec--ccCCcE
Confidence 35667777777776642 3699999999999998765321110000 001111 111 23563
Q ss_pred --EEEEEeCCCcEEEEECCCCCcceEEEeecC-------------CCe--------------------------EEEEec
Q 014154 229 --KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEE 267 (430)
Q Consensus 229 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~s 267 (430)
.++.++.+|.++++|..+++. +..+.... .++ ..++++
T Consensus 316 ~~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d 394 (571)
T 2ad6_A 316 TPLLSHIDRNGILYTLNRENGNL-IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYD 394 (571)
T ss_dssp EEEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE
T ss_pred EEEEEEeCCCcEEEEEECCCCCE-EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceEC
Confidence 577788999999999998764 43333211 111 245788
Q ss_pred CCCCEEEEEe-------------------------------------CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154 268 PDSFNIYIGN-------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH 310 (430)
Q Consensus 268 p~~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~ 310 (430)
|+..+|++.+ .++.|..||+.+++.+.++... ..+....+.
T Consensus 395 p~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~ 472 (571)
T 2ad6_A 395 PESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLY 472 (571)
T ss_dssp TTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEE
T ss_pred CCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEE
Confidence 8877777764 2478999999999998887643 223322233
Q ss_pred CCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 311 PTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 311 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
..+..++.++.||.|+.||.++|+.+..+.+..... ...+.|..+|+.
T Consensus 473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~--~~p~~~~~~G~~ 520 (571)
T 2ad6_A 473 TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI--GSPMTYSFKGKQ 520 (571)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEE
T ss_pred ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE--eeeEEEEECCEE
Confidence 345678889999999999999999999865433211 123445677876
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.23 E-value=2e-12 Score=117.89 Aligned_cols=181 Identities=12% Similarity=0.109 Sum_probs=104.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 252 (430)
++..+++++.|+.|+.||..+++.++.+.. . . +.+..+ ..++..+++++.|+.|+.||..+++. +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-~---------~~s~p~--~~~g~~~v~~s~dg~l~a~d~~tG~~-~w 73 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-P---------VLQVPT--HVEEPAFLPDPNDGSLYTLGSKNNEG-LT 73 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-C---------SCCCC-------CCEEECTTTCCEEEC-----CC-SE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-C---------ceecce--EcCCCEEEEeCCCCEEEEEECCCCce-ee
Confidence 578899999999999999999999988765 1 1 222223 34666777778999999999988664 34
Q ss_pred EEeecCC-CeE-EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 253 SFDFRET-PIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 253 ~~~~~~~-~i~-~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
.+..+.. .+. +..+. .+..|++++.++.|+.||.++|+.+..+..+ . ...++|++..|++++.|+.|+.||.
T Consensus 74 ~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 74 KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDT 147 (369)
T ss_dssp ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCS
T ss_pred eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEEC
Confidence 4433211 110 11111 3457788888999999999999998888765 2 2346678889999999999999999
Q ss_pred CCCceeeEEEeeccccceEEeeecccc----ccccccCCCCceEecCCCCCc
Q 014154 331 KTRQLLSAVFLKQHLNEVVFDSAFADK----EVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~~~~~~d~~i~~~~~~~~~ 378 (430)
++|+.+..+..... ...+++++ +.+++++.++.+..|+.....
T Consensus 148 ~tG~~~W~~~~~~~-----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 148 KTRELRWNATYFDY-----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp SSSSCCCEEEEEEE-----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCCCEEEeEecccc-----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 99998877543222 23444443 555777889999999986543
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=2.2e-09 Score=106.37 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=111.1
Q ss_pred CeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC----CCcEEEEECCCCCcceEEEeec
Q 014154 184 VEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDFR 257 (430)
Q Consensus 184 ~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~ 257 (430)
..|++|++.++.. ...+..... +..++..+.| +|++++|+.... ...|+++|+.++......+..+
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~------~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPA------QHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGG------GCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cEEEEEECCCCcccceEEEecCCC------CCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 3589999876542 112221100 0134677888 899998765442 2489999998764345666666
Q ss_pred CCCeEEEEecCCCCEEEEEeC-C---CcEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC---cEEEE
Q 014154 258 ETPIKAVAEEPDSFNIYIGNG-S---GDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDS---YLRFW 328 (430)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~-d---~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg---~i~iw 328 (430)
....... +++++..|+..+. + +.|..+|+.++.. ...+..+ ...+. .|++++.+|+....++ .|++|
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-CCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 6666555 6666666655443 3 6799999987654 3455555 44444 8899998877665443 68999
Q ss_pred ECCCCceeeEEEeeccccceEEeeeccccccc-cccC----CCCceEecCCCC
Q 014154 329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA----DAPMLEIQNGND 376 (430)
Q Consensus 329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~----~d~~i~~~~~~~ 376 (430)
++..+ ....+.+.+ ...+..+.+++++.. +... ..+.+..|+...
T Consensus 356 d~~g~-~~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 356 DYEGK-RVREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp CTTSC-EEEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred ECCCC-eeEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 98744 444432322 234678888888875 3322 237888888754
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.22 E-value=4.7e-09 Score=103.37 Aligned_cols=286 Identities=12% Similarity=0.074 Sum_probs=170.0
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC--CCCce-EEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP--EDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~ 142 (430)
..|++++.++.|..+|..+|+.+..+.......... ....+ ....+.. +.++.++.++.+..++...
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~v~v~~~dg~l~AlDa~T 140 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK----------GKVYVGVLDGRLEAIDAKT 140 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET----------TEEEEECTTSEEEEEETTT
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC----------CEEEEEccCCEEEEEECCC
Confidence 357788888999999999999888775421100000 00000 0011111 4777777788777766533
Q ss_pred cCccccCCCcceEEeeecCC---CceEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCeeeEeeCCCCCCCCCC-
Q 014154 143 TKVSAESSCSTVKSWNVCAS---GTIAFSKVDI--SEKFSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI- 210 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~---~~i~~~~~~~--~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~- 210 (430)
.. .+|..... .....+..+| .+..+++++ .++.|+.||..+|+.++.+..........
T Consensus 141 G~----------~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 141 GQ----------RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp CC----------EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred CC----------EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 22 13443221 0001111112 134455554 36899999999999998875321110000
Q ss_pred ---------------------cCCcceeEEEEeecCCCCEEEEEeCCCc-------------------EEEEECCCCCcc
Q 014154 211 ---------------------FTPTWFTSAAFLSIDDHRKFVAGTNDHQ-------------------VRLYDTSAQRRP 250 (430)
Q Consensus 211 ---------------------~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~ 250 (430)
........+++ +|+..+++.++.++. |..||..+++.
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~- 287 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY- 287 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-
T ss_pred ccccccccccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-
Confidence 00001124667 777888998888764 99999999875
Q ss_pred eEEEee--cC-------CCeEEEEecCCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC---------------
Q 014154 251 VMSFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS--------------- 303 (430)
Q Consensus 251 ~~~~~~--~~-------~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------- 303 (430)
+-.++. |. .+........+|+ .++.++.+|.++++|.++|+++..........
T Consensus 288 ~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 288 VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence 444443 21 1222222233564 78899999999999999999875433210000
Q ss_pred -----------------------eEEEEecCCCCeEEEEeC---------------------------------------
Q 014154 304 -----------------------IRSIARHPTLPIIASCGL--------------------------------------- 321 (430)
Q Consensus 304 -----------------------v~~i~~~~~~~~l~s~~~--------------------------------------- 321 (430)
-..++|+|+..+|++...
T Consensus 368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 447 (689)
T 1yiq_A 368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL 447 (689)
T ss_dssp HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence 112678888777776532
Q ss_pred ------CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 322 ------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 322 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
+|.|+.||+.+++.+..+..... .....+...+.+ ++++.|+.++.||....+
T Consensus 448 ~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 448 EMAKSWSGKLIAWDPVKQQAAWEVPYVTI----FNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp HHHTTCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCcceeEEEEECCCCCeEeEccCCCC----ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 37899999999999988543322 233345555555 778899999999987654
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.22 E-value=6e-12 Score=114.70 Aligned_cols=203 Identities=11% Similarity=0.015 Sum_probs=113.2
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
+.+++++.++.+..|+..... .+|.... ..+.+..+..++..+++++.|+.|+.||..+++.++....+
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~----------~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGS----------IKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCC----------EEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred CEEEEEcCCCEEEEEECCCCC----------EEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 578888889988888864332 2455544 45555555567777888889999999999999887766543
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA 283 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~ 283 (430)
.. ..+.+... -..+..|++++.++.|+.||..+++. +..+..+. ...++|++..+++++.++.|+
T Consensus 79 ~~--------~~~~~sp~--~~~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 79 IP--------ELVQASPC--RSSDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp HH--------HHHTTCSC--C-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEE
T ss_pred Cc--------cccccCce--EecCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEE
Confidence 11 01100000 11345678888899999999998764 44554432 234567888999999999999
Q ss_pred EEEccCCeEEeeeeCCCCCCeEEEEecCCC---CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358 (430)
Q Consensus 284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 358 (430)
.||.++++.+..+..+ . .....+.++. ..+++++.||.|+.||..+|+.+..+.+. ...+....++++|
T Consensus 144 a~d~~tG~~~W~~~~~-~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~pv~~~~~~~~dg 215 (369)
T 2hz6_A 144 MYDTKTRELRWNATYF-D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA---SPVVAFYVWQREG 215 (369)
T ss_dssp CCCSSSSSCCCEEEEE-E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS---SCEEEEEECTTSS
T ss_pred EEECCCCCEEEeEecc-c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC---CceEEEEEecCCc
Confidence 9999999987776532 1 2223344432 46778889999999999999998875432 2223334455555
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.20 E-value=6e-09 Score=88.78 Aligned_cols=207 Identities=12% Similarity=-0.015 Sum_probs=141.9
Q ss_pred eEEeeecCCCceEEEEEcCCCCEEEEEe-C--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154 154 VKSWNVCASGTIAFSKVDISEKFSLFGG-K--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
+..+..........+.|++++ .|+.++ . ++.|.++|+.+++.+..+..... .....+++ . .+.+.
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------~fgeGi~~--~-g~~ly 79 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------YFGEGLTL--L-NEKLY 79 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEE
T ss_pred EEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------cceEEEEE--e-CCEEE
Confidence 334443333446899999986 555443 3 57999999999998887653221 12334555 2 23344
Q ss_pred EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEE
Q 014154 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRS 306 (430)
Q Consensus 231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~ 306 (430)
++.-.++.+.++|..+.+ .+..+..... ....+++|++.++++..++.|.++|..+.+.+..+.... -..++.
T Consensus 80 v~t~~~~~v~viD~~t~~-v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 80 QVVWLKNIGFIYDRRTLS-NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp EEETTCSEEEEEETTTTE-EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEecCCEEEEEECCCCc-EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 444568899999999855 4666653311 123356788888888888999999999999888776420 124678
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc----------ccceEEeeeccccccc--cccCCCCceEecCC
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH----------LNEVVFDSAFADKEVA--NAAADAPMLEIQNG 374 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~ 374 (430)
+.|. ++...+....++.|.+.|..+++.+..+.+.+- .......++|+|+++. +++...+.+.+.+.
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 8888 775555555678999999999999999766431 1135689999999875 77777888877766
Q ss_pred CC
Q 014154 375 ND 376 (430)
Q Consensus 375 ~~ 376 (430)
..
T Consensus 236 ~~ 237 (266)
T 2iwa_A 236 HL 237 (266)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.19 E-value=4.3e-09 Score=103.46 Aligned_cols=280 Identities=13% Similarity=0.106 Sum_probs=173.7
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCC-----C-CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-----Q-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 140 (430)
.|++++.++.|..+|..+|+.+..+........ . ..... +.+.. +.++.++.++.+..++.
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~a~~~----------~~v~v~~~dg~l~alD~ 145 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG---VALWK----------GKVYVGAWDGRLIALDA 145 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC---CEEET----------TEEEEECTTSEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCC---ceEEC----------CEEEEEcCCCEEEEEEC
Confidence 577777889999999999998877664211000 0 00011 11211 47777777887777765
Q ss_pred eecCccccCCCcceEEeeecCC------CceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCC
Q 014154 141 EVTKVSAESSCSTVKSWNVCAS------GTIAF-SKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNS 207 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~~~------~~i~~-~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~ 207 (430)
.... .+|..... ..+.. ..+ .+..+++++. ++.|+.||..+++.++.+.......
T Consensus 146 ~tG~----------~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~ 213 (677)
T 1kb0_A 146 ATGK----------EVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP 213 (677)
T ss_dssp TTCC----------EEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred CCCC----------EEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc
Confidence 4322 13443322 11111 111 2455666553 6899999999999998876543221
Q ss_pred CCC-----------------------cCCcceeEEEEeecCCCCEEEEEeCCC-------------------cEEEEECC
Q 014154 208 LGI-----------------------FTPTWFTSAAFLSIDDHRKFVAGTNDH-------------------QVRLYDTS 245 (430)
Q Consensus 208 ~~~-----------------------~~~~~v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~ 245 (430)
... ........+++ ++++.+|+.++.++ .|..+|..
T Consensus 214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~ 291 (677)
T 1kb0_A 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD 291 (677)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred cccccccccccccccccccCceeEeCCCcccccceeE--cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC
Confidence 000 00011134567 77888888887664 49999999
Q ss_pred CCCcceEEEee--cC-------CCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC----------C
Q 014154 246 AQRRPVMSFDF--RE-------TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG----------S 303 (430)
Q Consensus 246 ~~~~~~~~~~~--~~-------~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~ 303 (430)
+++. +-.++. |. .....+....+| ..++.++.+|.|+++|.++|+++..+...... +
T Consensus 292 TG~~-~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~ 370 (677)
T 1kb0_A 292 TGKY-KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKP 370 (677)
T ss_dssp TCCE-EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCE
T ss_pred CCCE-EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCce
Confidence 9774 444443 21 112223334467 68899999999999999999998776532000 0
Q ss_pred e------------------------EEEEecCCCCeEEEEeC--------------------------------------
Q 014154 304 I------------------------RSIARHPTLPIIASCGL-------------------------------------- 321 (430)
Q Consensus 304 v------------------------~~i~~~~~~~~l~s~~~-------------------------------------- 321 (430)
+ ..++++|+..++++...
T Consensus 371 ~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 450 (677)
T 1kb0_A 371 IGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP 450 (677)
T ss_dssp EECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSC
T ss_pred eeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccccc
Confidence 1 14678898888777543
Q ss_pred -----CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 322 -----DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 322 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
.|.|..||+.+++.+..+..... ++...+..++.+ +.++.|+.+++||.....
T Consensus 451 ~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 451 PKSKPFGRLLAWDPVAQKAAWSVEHVSP----WNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp CCSCCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCccEEEEEeCCCCcEEeecCCCCC----CcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 27899999999999988643222 244455566655 778899999999986543
No 230
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.18 E-value=9.6e-09 Score=90.57 Aligned_cols=217 Identities=11% Similarity=0.022 Sum_probs=134.1
Q ss_pred CC-CCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154 62 SQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 62 ~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 140 (430)
+| ++.++++...++.|..||..++.. ..+.. ...+.++.+.+ . +.++.+. ++.+.+++.
T Consensus 21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---------~~~~~~i~~~~-d--------G~l~v~~-~~~l~~~d~ 80 (297)
T 3g4e_A 21 EEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM---------DAPVSSVALRQ-S--------GGYVATI-GTKFCALNW 80 (297)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC---------SSCEEEEEEBT-T--------SSEEEEE-TTEEEEEET
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC---------CCceEEEEECC-C--------CCEEEEE-CCeEEEEEC
Confidence 45 345666677789999999977654 22221 12455555432 2 3455554 455666654
Q ss_pred eecCccccCCCcceEEeeec----CCCceEEEEEcCCCCEEEEEeCC---------CeEEEEECCC-CeeeEeeCCCCCC
Q 014154 141 EVTKVSAESSCSTVKSWNVC----ASGTIAFSKVDISEKFSLFGGKG---------VEVNVWDLDK-CEKIWTAKPPPKN 206 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~-~~~~~~~~~~~~~ 206 (430)
.. +.+..+... ....+..++++|+++++++.... ..-.+|.+.. +........
T Consensus 81 ~~---------g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---- 147 (297)
T 3g4e_A 81 KE---------QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---- 147 (297)
T ss_dssp TT---------TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE----
T ss_pred CC---------CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec----
Confidence 21 233322211 12357889999999976654221 2234444432 222211111
Q ss_pred CCCCcCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEECC--CCCc----ceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154 207 SLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS--AQRR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 207 ~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (430)
....+.++| +|+++.|+ +.+.++.|.+||+. ++.. .+..+..+......++++++|++.++....
T Consensus 148 ------~~~pngi~~--spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 148 ------VDISNGLDW--SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp ------ESBEEEEEE--CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred ------cccccceEE--cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence 134678899 89998664 45567889999874 3321 111222233567899999999887777778
Q ss_pred CcEEEEEccCCeEEeeeeCCCCCCeEEEEec-CCCCeEEEEe
Q 014154 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG 320 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~ 320 (430)
+.|..||..+++.+..+..+ ...+++++|. |+++.|+.++
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEE
T ss_pred CEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEc
Confidence 88999999999998888876 6789999998 8887665554
No 231
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.17 E-value=2.4e-08 Score=96.04 Aligned_cols=188 Identities=14% Similarity=0.150 Sum_probs=117.6
Q ss_pred EEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---
Q 014154 167 FSKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--- 227 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 227 (430)
.+++.+...+++.+..+ +.|..+|.++++.++.++................-+... ..++
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~-~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQK-DKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-CTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecc-ccCCcEE
Confidence 35667778888887765 389999999999998876543221111000111111210 1456
Q ss_pred CEEEEEeCCCcEEEEECCCCCcceEEEeecC-------------CCe--------------------------EEEEecC
Q 014154 228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEEP 268 (430)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~sp 268 (430)
..++.++.+|.++++|..+++. +....... .++ ..++++|
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGAL-VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEECCCcEEEEEECCCCCE-eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 4677788999999999998764 43332110 111 2456777
Q ss_pred CCCEEEEEe---------------------------------------CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154 269 DSFNIYIGN---------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 269 ~~~~l~~~~---------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
+..++++.. ..|.|..||+.+++.+.+.... .+...-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 766665531 3478999999999988777532 12221112
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
...+.+++.++.|+.|+.||.++|+.+.++.+.... ...-+.|..+|+.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~--~~~P~~y~~~G~q 529 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA--IGYPMTYTHKGTQ 529 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC--CSCCEEEEETTEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc--EeccEEEEeCCEE
Confidence 225667888999999999999999999987554321 1233556677764
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=1e-08 Score=92.34 Aligned_cols=266 Identities=12% Similarity=-0.030 Sum_probs=156.6
Q ss_pred ceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCcccceeecc
Q 014154 25 LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISNA 94 (430)
Q Consensus 25 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~~ 94 (430)
+|.+.|..++ +++.++.....+ .+.+ +|||++|+++. .++.|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~-----~v~~~i~vG~~P----~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 47 ENWVSCAGCG-----VTLGHSLGAFLS----LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp EEEEEETTTT-----EEEEEEEECTTC----EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred eEEEEECCCC-----eEEEEEeCCCCC----ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 7889999987 777776543333 2444 77888888876 4789999999999988887531
Q ss_pred CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEE--EEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154 95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASM--RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV 170 (430)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v--~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 170 (430)
....+... .....+.+.+.. ..++.+.. +..+.+ ++... ++..... +. ..+
T Consensus 116 ~~~~~~~g-~~P~~ia~SpDG--------k~lyVan~~~~~~v~V~~iD~~t-----------v~~i~v~--~~---~~~ 170 (368)
T 1mda_H 116 DAPRFSVG-PRVHIIGNCASS--------ACLLFFLFGSSAAAGLSVPGASD-----------DQLTKSA--SC---FHI 170 (368)
T ss_dssp TSCSCCBS-CCTTSEEECTTS--------SCEEEEECSSSCEEEEEETTTEE-----------EEEEECS--SC---CCC
T ss_pred CccccccC-CCcceEEEcCCC--------CEEEEEccCCCCeEEEEEEchhh-----------ceEEECC--Cc---eEE
Confidence 00000000 011123333332 24444432 344555 44321 2222221 11 112
Q ss_pred cCCC-CEEEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154 171 DISE-KFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 171 ~~~~-~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 244 (430)
.|++ ..+++.+.|+.+.+.|+++ ++...... ..... ...+. .+ +++..++..+. +.|.+.|+
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t----~~i~v-g~~P~---~~---~~~~~~~~vs~-~~V~viD~ 238 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT----GAQNC-SSQAA---QA---NYPGMLVWAVA-SSILQGDI 238 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC----TTSCB-CSCCE---EE---TTTTEEEECBS-SCCEEEEC
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee----eeeeC-CCCcc---cc---ccCCEEEEEcC-CEEEEEEC
Confidence 3333 3445567788888889876 33222110 00000 00122 23 34555555566 99999999
Q ss_pred CCCCc-ceEEEee-------c---CCCeEEEEecCCCCEEEEEeC---------CCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154 245 SAQRR-PVMSFDF-------R---ETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSI 304 (430)
Q Consensus 245 ~~~~~-~~~~~~~-------~---~~~i~~~~~sp~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v 304 (430)
..... .+..+.. + ......++++|+++.++++.. ++.+.++|+.+.+.+..+... ...
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p 316 (368)
T 1mda_H 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDS 316 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEE
T ss_pred CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCc
Confidence 75321 1111111 0 011222689999998887643 235669999999999988864 368
Q ss_pred EEEEecCCCC-eEEEEe-CCCcEEEEECCCCceeeEEE
Q 014154 305 RSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 305 ~~i~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~ 340 (430)
..+.|+|+++ ++++.. .++.|.++|+.+++.+.++.
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 9999999997 456666 59999999999999998853
No 233
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.15 E-value=5.6e-08 Score=86.86 Aligned_cols=215 Identities=8% Similarity=-0.083 Sum_probs=131.7
Q ss_pred CCC-CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154 62 SQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI 140 (430)
Q Consensus 62 ~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~ 140 (430)
+|+ +.++++...++.|.+||..+++.. .+.. ...+.++.+.+. +.++.++.+ .+.+++.
T Consensus 57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------~~~v~~i~~~~d---------g~l~v~~~~-gl~~~d~ 116 (326)
T 2ghs_A 57 DPASGTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKISD---------SKQLIASDD-GLFLRDT 116 (326)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEET---------TEEEEEETT-EEEEEET
T ss_pred eCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC---------CCcceEEEEeCC---------CeEEEEECC-CEEEEEC
Confidence 555 455666777899999998766532 2221 124555554332 344444443 3555553
Q ss_pred eecCccccCCCcceEEee-ec---CCCceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 141 EVTKVSAESSCSTVKSWN-VC---ASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
.. +.+..+. .. ....+..++++|+++++++... .+.|+.++ +++.......
T Consensus 117 ~~---------g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-------- 177 (326)
T 2ghs_A 117 AT---------GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-------- 177 (326)
T ss_dssp TT---------CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--------
T ss_pred CC---------CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--------
Confidence 21 2333222 11 1235789999999987665432 24566666 4443221111
Q ss_pred cCCcceeEEEEeecCCCCEEEEE-eCCCcEEEEECC--CC-Cc----ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTS--AQ-RR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL 282 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~--~~-~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i 282 (430)
......++| +|+++.|+.+ +.++.|.+||+. ++ .. .+..+.........++++++|++.++...++.|
T Consensus 178 --~~~~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v 253 (326)
T 2ghs_A 178 --ISIPNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV 253 (326)
T ss_dssp --ESSEEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred --CcccCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence 133578889 8999866554 457899999986 44 21 111222233457889999999877776677889
Q ss_pred EEEEccCCeEEeeeeCCCCCCeEEEEec-CCCCeEEEEeC
Q 014154 283 ASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCGL 321 (430)
Q Consensus 283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~ 321 (430)
.+||. +++.+..+..+ ...+++++|+ |++..|+.++.
T Consensus 254 ~~~d~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 254 DRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEEB
T ss_pred EEECC-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEec
Confidence 99998 67777777765 5679999998 88876655543
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.14 E-value=5.6e-09 Score=94.12 Aligned_cols=205 Identities=9% Similarity=-0.019 Sum_probs=132.8
Q ss_pred CCceEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEe-
Q 014154 162 SGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGT- 234 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~- 234 (430)
-..+..++++++++++++-.. +..|.+||+.+++.+..+...... ..+...+..+++ ++++ ..+++..
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---~~~~~~~~~v~v--d~~~g~~yvtd~~ 140 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---TLSNSFVNDLAV--DLIHNFVYISDPA 140 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---SCTTCCCCEEEE--ETTTTEEEEEECC
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh---cccccccceEEE--ecCCCEEEEEcCc
Confidence 357888999998876665433 578999999998876655432111 011245688899 6554 4445544
Q ss_pred --CCCcEEEEECCCCCcceEEEeec-----------------------------CCCeEEEEecCCCCEEEEEeCCC-cE
Q 014154 235 --NDHQVRLYDTSAQRRPVMSFDFR-----------------------------ETPIKAVAEEPDSFNIYIGNGSG-DL 282 (430)
Q Consensus 235 --~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~~i~~~~~sp~~~~l~~~~~d~-~i 282 (430)
.++.|.+||+.+++. ...+..| ...+..|+|+|+++.|+.+..++ .|
T Consensus 141 ~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp SGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred cCCCCeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence 578999999986542 3333221 02358899999999998887766 55
Q ss_pred EEEEcc---CCe-----EEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEee
Q 014154 283 ASVDIR---TGK-----LLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS 352 (430)
Q Consensus 283 ~iwd~~---~~~-----~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 352 (430)
..++.. .+. ... ...++ ......++++++|.++++...++.|.+||..+++.... ..........++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~--~~~~~~~~p~~v 296 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL--VTDEKLSWTDSF 296 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE--EECGGGSCEEEE
T ss_pred EEEEHHHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE--EECCceecCCee
Confidence 555532 111 000 11122 33567799999999888888899999999856664332 222212346899
Q ss_pred eccccccc-cccCCCCceEecCCC
Q 014154 353 AFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 353 ~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
+|.++|.+ ++.+..+.+.+|...
T Consensus 297 a~~~~g~l~v~~~~~~~~~~f~~~ 320 (343)
T 2qe8_A 297 NFGSDGYLYFDCNQLHHSAPLNAG 320 (343)
T ss_dssp EECTTSCEEEEECCGGGSGGGBTT
T ss_pred EECCCCcEEEEeCccccccccccC
Confidence 99999987 776766777666643
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=7.2e-09 Score=91.77 Aligned_cols=192 Identities=8% Similarity=-0.049 Sum_probs=126.8
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
.......|+|+++ ++++...++.|..|+.. +.. ..+.... ..+..+++ +++++++++...++.|.+
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~---------~~~~gl~~--d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDAT---------AFTNGNAV--DAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESC---------SCEEEEEE--CTTSCEEEEETTTTEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCC---------CccceeeE--CCCCCEEEEECCCCEEEE
Confidence 4566788999988 55666778899999984 432 2222111 45788899 889987766556688999
Q ss_pred EECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEE----EeC-------------CCcEEEEEccCCeEEeeeeCC
Q 014154 242 YDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYI----GNG-------------SGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~ 299 (430)
|+.. +. +..+..+ ...+..++++|+|+++++ |.. .+.|..||..+++..... .
T Consensus 112 ~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~ 186 (305)
T 3dr2_A 112 SDAD-GQ--AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D 186 (305)
T ss_dssp ECTT-SC--EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred ECCC-CC--EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence 9986 33 2222211 134678999999988876 332 256888888777654333 2
Q ss_pred CCCCeEEEEecCCCCeEEEEeCC------CcEEEEECCCCceeeE--EEeeccccceEEeeeccccccccccCCCCceEe
Q 014154 300 CSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKTRQLLSA--VFLKQHLNEVVFDSAFADKEVANAAADAPMLEI 371 (430)
Q Consensus 300 ~~~~v~~i~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~ 371 (430)
......++|+|+++.|+.+... +.|++|++..+. +.. ...... ......+++.++|.+.++..+ .|.+
T Consensus 187 -~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~-~~~pdgi~~d~~G~lwv~~~~-gv~~ 262 (305)
T 3dr2_A 187 -LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP-DGLPDGFCVDRGGWLWSSSGT-GVCV 262 (305)
T ss_dssp -ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCS-SSCCCSEEECTTSCEEECCSS-EEEE
T ss_pred -CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC-CCCCCeEEECCCCCEEEecCC-cEEE
Confidence 4567899999999988777665 689999987654 221 111111 222457889999998444444 4888
Q ss_pred cCCCC
Q 014154 372 QNGND 376 (430)
Q Consensus 372 ~~~~~ 376 (430)
|+...
T Consensus 263 ~~~~g 267 (305)
T 3dr2_A 263 FDSDG 267 (305)
T ss_dssp ECTTS
T ss_pred ECCCC
Confidence 88753
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.09 E-value=2.2e-08 Score=84.23 Aligned_cols=190 Identities=11% Similarity=0.016 Sum_probs=130.4
Q ss_pred ceEEeeecCCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF 230 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 230 (430)
.++.+......-...+.|+ ++.++.+.+.+| .|+++|+.+++.+.++..... ..-..+++ ++..|
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~--------~FgeGit~----~g~~l 99 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR--------YFGEGISD----WKDKI 99 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT--------CCEEEEEE----ETTEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc--------cceeEEEE----eCCEE
Confidence 3444544444556889998 566666666665 899999999999887754320 11233555 34444
Q ss_pred EEE-eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeE
Q 014154 231 VAG-TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIR 305 (430)
Q Consensus 231 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~ 305 (430)
... -.++.+.+||..+.+ .+.++.... ....+++++..|+.+..++.|.++|..+.+.+..+.... -..++
T Consensus 100 y~ltw~~~~v~v~D~~t~~-~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLR-QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEESSSSEEEEEETTTCC-EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECccCc-EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 444 468899999999866 466766532 223334678888887778899999999999888776421 13455
Q ss_pred EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc---------ccceEEeeeccccccc
Q 014154 306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH---------LNEVVFDSAFADKEVA 360 (430)
Q Consensus 306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~g~~ 360 (430)
.+.|. +|.+.+..-.++.|.+.|.++++.+..+.+.+- .....+.+||+|++..
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~ 238 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR 238 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence 67786 676555555688999999999999999875421 1245689999998776
No 237
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.08 E-value=1.4e-07 Score=90.80 Aligned_cols=187 Identities=13% Similarity=0.119 Sum_probs=118.0
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCCeeeEeeCCCCCCCCCCcC-CcceeEEEE
Q 014154 167 FSKVDISEKFSLFGGK--------------------G----VEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAF 221 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~--------------------d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 221 (430)
.++++|...+++++.. | +.|..+|..+++.++.++........... ...+. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4567777788887763 2 58999999999999987653211111100 01111 111
Q ss_pred eecCCC---CEEEEEeCCCcEEEEECCCCCcceEEEeecC-------------CC-------------------------
Q 014154 222 LSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TP------------------------- 260 (430)
Q Consensus 222 ~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~------------------------- 260 (430)
...++ ..++.++.+|.++++|..+++. +..+.... .+
T Consensus 329 -~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P 406 (582)
T 1flg_A 329 -KAKDGKIVKATAHADRNGFFYVVDRSNGKL-QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP 406 (582)
T ss_dssp -ECSSSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred -ecCCCCEEEEEEEECCCceEEEEECCCCCE-ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence 01356 3788899999999999998764 43333221 00
Q ss_pred -------eEEEEecCCCCEEEEEe---------------------------------CCCcEEEEEccCCeEEeeeeCCC
Q 014154 261 -------IKAVAEEPDSFNIYIGN---------------------------------GSGDLASVDIRTGKLLGCFIGKC 300 (430)
Q Consensus 261 -------i~~~~~sp~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~ 300 (430)
-..++++|+..++++.. .+|.|..||+.+++.+.+....
T Consensus 407 ~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~- 485 (582)
T 1flg_A 407 PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH- 485 (582)
T ss_dssp CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-
T ss_pred CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-
Confidence 01346677665665543 2578999999999998777643
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
.++..-.....+.+++.++.||.|+.||.++|+.+.++.+..... ..-+.|..+|+.
T Consensus 486 -~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~--a~P~~y~~~G~q 542 (582)
T 1flg_A 486 -LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV--SPPITWEQDGEQ 542 (582)
T ss_dssp -SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEE
T ss_pred -CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcc--cCceEEEECCEE
Confidence 222221122246678889999999999999999999875543211 123567778875
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.05 E-value=1.3e-07 Score=88.97 Aligned_cols=245 Identities=12% Similarity=0.044 Sum_probs=147.8
Q ss_pred eeeee-cCCCCCceeEEeec-CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEee-cCcccccccCceEEEEcc
Q 014154 55 LAASI-DDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTT 131 (430)
Q Consensus 55 ~~~~~-~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~ 131 (430)
..+++ ++.+||++|.+... ++.|.+.|+.+.+....+.. |....+.++.+.. ... ++++++.+
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p~~-------~~v~~~~~ 155 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRS-------NYVFCNGE 155 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBC-------SEEEEEEC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecCCC-------cEEEEecc
Confidence 45555 67788998888654 56799999999887775432 1112444555533 222 35554431
Q ss_pred ------------------CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC---------
Q 014154 132 ------------------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--------- 184 (430)
Q Consensus 132 ------------------~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------- 184 (430)
++.+.+.+.+. .-.+|.+.-++....++++|+++++++.+.+.
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t----------~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~ 225 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 225 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTT----------TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred cccccCCCCcccccccccCceEEEEECCC----------CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhc
Confidence 12333333221 22244443334556678888999988887553
Q ss_pred -----------------------------eEEEEECCC--Cee-eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154 185 -----------------------------EVNVWDLDK--CEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232 (430)
Q Consensus 185 -----------------------------~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 232 (430)
.|.+.|..+ +.. +..+. ......++.+ +|||+++++
T Consensus 226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip----------vg~~PhGv~~--sPDGk~v~V 293 (595)
T 1fwx_A 226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP----------IANNPHGCNM--APDKKHLCV 293 (595)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE----------EESSCCCEEE--CTTSSEEEE
T ss_pred cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe----------cCCCceEEEE--cCCCCEEEE
Confidence 244444443 222 11111 1134567888 899997776
Q ss_pred Ee-CCCcEEEEECCCCC-----------cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC----------C
Q 014154 233 GT-NDHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G 290 (430)
Q Consensus 233 ~~-~dg~i~iwd~~~~~-----------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~----------~ 290 (430)
++ .+.+|.++|+.+.+ ..+..... ......++|+|+|...++...|+.|.+||+.+ .
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 65 57899999998532 11223322 34678899999994444566789999999987 5
Q ss_pred eEEeeeeCCCCCCe-----EEEEecCCCCeEEEEe---CCCc----------EEEEECCCCceee
Q 014154 291 KLLGCFIGKCSGSI-----RSIARHPTLPIIASCG---LDSY----------LRFWDIKTRQLLS 337 (430)
Q Consensus 291 ~~~~~~~~~~~~~v-----~~i~~~~~~~~l~s~~---~dg~----------i~iwd~~~~~~~~ 337 (430)
+.+.++..| ..+- .++.++|||++|+++. .|.. -.++|+..+++..
T Consensus 373 ~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 373 PIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp CEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred eeEEEeecc-cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 677777765 2221 2234589999998885 3443 1789997655443
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.03 E-value=6.6e-09 Score=102.89 Aligned_cols=193 Identities=11% Similarity=0.048 Sum_probs=125.2
Q ss_pred ceEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-
Q 014154 164 TIAFSKVDISEKFSLFGG-----KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH- 237 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg- 237 (430)
.+..++|+|++++|+.+. ....|++||+.+++.+..... . .....++| + |++.|+.++.+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~---------~k~~~~~W--s-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-D---------VKFSGISW--L-GNEGFFYSSYDKP 196 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-E---------EESCCCEE--E-TTTEEEEEESSCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-C---------ceeccEEE--e-CCCEEEEEEecCc
Confidence 577889999999988543 235799999999876543110 0 11356788 8 999898888774
Q ss_pred ------------cEEEEECCCCCcc-eEEEe--e-cCCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCe-EEeee
Q 014154 238 ------------QVRLYDTSAQRRP-VMSFD--F-RETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGK-LLGCF 296 (430)
Q Consensus 238 ------------~i~iwd~~~~~~~-~~~~~--~-~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~ 296 (430)
.|++|++.+.... ...+. . |.....++.|+|||++|+.... .+.|+++|+.++. ....+
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 3999999875431 22332 2 3445788999999998865543 2589999998763 34455
Q ss_pred eCCCCCCeEEEEecCCCCeEEEEe-CC---CcEEEEECCCCce--eeEEEeeccccceEEeeeccccccc-cccC-CCC-
Q 014154 297 IGKCSGSIRSIARHPTLPIIASCG-LD---SYLRFWDIKTRQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAP- 367 (430)
Q Consensus 297 ~~~~~~~v~~i~~~~~~~~l~s~~-~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~- 367 (430)
..+ ....... |++++..|+..+ .+ +.|.++|+.++.. ... +..+.... . .|++++.. +... .++
T Consensus 277 ~~~-~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~-~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 277 QGD-LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD--LIPERQQV-L--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp ECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSC-E--EEEEETTEEEEEEEETTE
T ss_pred eCC-CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE--EecCCCCE-E--EEEEECCEEEEEEEECCe
Confidence 554 4444444 666666554443 33 6799999987654 223 22333333 3 88999887 4443 343
Q ss_pred -ceEecCCCC
Q 014154 368 -MLEIQNGND 376 (430)
Q Consensus 368 -~i~~~~~~~ 376 (430)
.|.+|+...
T Consensus 350 ~~l~~~d~~g 359 (693)
T 3iuj_A 350 ARVEQFDYEG 359 (693)
T ss_dssp EEEEEECTTS
T ss_pred eEEEEEECCC
Confidence 678887754
No 240
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.00 E-value=3.2e-07 Score=76.54 Aligned_cols=190 Identities=16% Similarity=0.154 Sum_probs=130.0
Q ss_pred eEEeeecCCCceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 231 (430)
++.+......-...+.|++ +.+..+.+.. ..|+.+|+.+++.+........ ..-..+++ . ++.+.+
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------~fgeGi~~--~-~~~ly~ 79 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------YFGAGIVA--W-RDRLIQ 79 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEEE
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------cceeEEEE--e-CCEEEE
Confidence 4444444456678899986 4455555554 4899999999999887754321 11234455 2 334444
Q ss_pred EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEE
Q 014154 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSI 307 (430)
Q Consensus 232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i 307 (430)
..-.++.+.+||..+.+ .+.++...... ..+ .+++..|+.+..++.|.++|..+.+.+.++.... -..++.+
T Consensus 80 ltw~~~~v~v~D~~tl~-~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLT-PRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp EESSSSEEEEEETTTTE-EEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEeeCCEEEEEECCcCc-EEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 45578899999999865 46677653322 344 4677788888889999999999999888776521 1345667
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec----------cccceEEeeeccccccc
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ----------HLNEVVFDSAFADKEVA 360 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~ 360 (430)
.|. +|...+..-.+..|.+.|.++++.+..+.+.+ ....+.+.+||+|++..
T Consensus 156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 775 66655555467899999999999999987553 12346789999998765
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.99 E-value=3.5e-08 Score=88.91 Aligned_cols=205 Identities=11% Similarity=0.004 Sum_probs=129.2
Q ss_pred CceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----
Q 014154 163 GTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----- 235 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----- 235 (430)
.....++++++++.+++.. .++.++||.+.+++. ..+...... ...+...+..+++ +++++++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~--~~~~~~~p~gv~~--d~~g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGN--AIITFDTVLGIKS--DGNGIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSS--CCCCCSCEEEEEE--CSSSEEEEEECHHHHTS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccC--cccceeEeeEEEE--cCCCcEEEEcCCCCcCC
Confidence 5788999999999888764 234244554445543 333221100 1112357889999 788876665433
Q ss_pred CCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCCCEEEEE-e---CCCcEEEEEccCCeEEeeeeCCC-----
Q 014154 236 DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIG-N---GSGDLASVDIRTGKLLGCFIGKC----- 300 (430)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~-~---~d~~i~iwd~~~~~~~~~~~~~~----- 300 (430)
++.|.+||+.+++ .+..+..+ ...+..++++|++..++.+ . .++.|.+||+.+++....+.+|.
T Consensus 92 ~~~i~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 92 VPKLVAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CCEEEEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCeEEEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 5789999998765 34555432 2346889999865555444 4 57889999998887765553320
Q ss_pred -----------------------CCCeEEEEecCCCCeEEEEeCCC-cEEEEECC---CC-----ceeeEEEeeccccce
Q 014154 301 -----------------------SGSIRSIARHPTLPIIASCGLDS-YLRFWDIK---TR-----QLLSAVFLKQHLNEV 348 (430)
Q Consensus 301 -----------------------~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~---~~-----~~~~~~~~~~~~~~~ 348 (430)
...+..|+|+|+++.|+.+..++ .|+.++.. .+ +....+...++.. .
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~ 249 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP-I 249 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC-S
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC-C
Confidence 02368899999999888887666 45444432 11 1111111112212 2
Q ss_pred EEeeeccccccc-cccCCCCceEecCC
Q 014154 349 VFDSAFADKEVA-NAAADAPMLEIQNG 374 (430)
Q Consensus 349 v~~~~~s~~g~~-~~~~~d~~i~~~~~ 374 (430)
...++++++|.+ ++...++.|.+|+.
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred CceEEECCCCCEEEEccCCCeEEEEEC
Confidence 367899999988 77778899999998
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=3.3e-07 Score=83.20 Aligned_cols=226 Identities=9% Similarity=-0.003 Sum_probs=143.5
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEee---e--c-CCCceEEEEEcCCCCEEEEEeCC------CeEEEEECC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---V--C-ASGTIAFSKVDISEKFSLFGGKG------VEVNVWDLD 192 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~---~--~-~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~d~~ 192 (430)
.++.+..++.+.|+++...+. .-..+++.. + . ....-..+.+.|++ +++++..+ +.|.++|.+
T Consensus 98 l~v~~l~s~~I~viD~~t~p~----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPR----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTT----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred EEEccCCCCeEEEEECCCCCC----CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence 566777788899998764432 011233331 0 0 11245667888999 66665554 789999999
Q ss_pred CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-------------------CCCcEEEEECCCCCcceEE
Q 014154 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------------------NDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~ 253 (430)
+.+.+.++...... ...-..+.| +|+++.+++.. ...+|.+||+.++ +.+.+
T Consensus 173 T~~v~~~~~~~~~~------~~~~Yd~~~--~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t 243 (462)
T 2ece_A 173 SFEPLGKWEIDRGD------QYLAYDFWW--NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS 243 (462)
T ss_dssp TCCEEEECCSBCTT------CCCCCCEEE--ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred CCeEEEEEccCCCC------ccccceEEE--CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence 99998887643211 011234566 88999888874 3689999999985 44666
Q ss_pred EeecC--CCeEEEEe--cCCCCEEEEEeC------CCcEEEEEccCCeE--Eeee--eCC---------C------CCCe
Q 014154 254 FDFRE--TPIKAVAE--EPDSFNIYIGNG------SGDLASVDIRTGKL--LGCF--IGK---------C------SGSI 304 (430)
Q Consensus 254 ~~~~~--~~i~~~~~--sp~~~~l~~~~~------d~~i~iwd~~~~~~--~~~~--~~~---------~------~~~v 304 (430)
+.... .....+.| +|+++++++++. +++|.+|....++. ...+ ... . ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 66531 23445555 999999988874 56887766654432 1111 110 0 1346
Q ss_pred EEEEecCCCCeEEEEeC-CCcEEEEECCC---CceeeEEEeeccc--------c---ceEEeeeccccccc-cccC
Q 014154 305 RSIARHPTLPIIASCGL-DSYLRFWDIKT---RQLLSAVFLKQHL--------N---EVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~~~~--------~---~~v~~~~~s~~g~~-~~~~ 364 (430)
..|.+|||+++|.++.. .+.|.+||+.. .+.+..+...|.. . ..-..++++|||++ .++.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 88999999999877764 67999999863 3556665444321 0 01367899999998 4444
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.98 E-value=2.2e-08 Score=89.51 Aligned_cols=177 Identities=12% Similarity=0.090 Sum_probs=123.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 253 (430)
+..|++++.++.|..+|.. ++..+...... ..+.++.. .+++. |..++.++.|..||.. +.. +..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--~~~g~-l~vgt~~~~l~~~d~~-g~~-~~~ 171 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKK---------AIYATPIV--SEDGT-IYVGSNDNYLYAINPD-GTE-KWR 171 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CTTSC-EEEECTTSEEEEECTT-SCE-EEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC---------ceeeeeEE--cCCCE-EEEEcCCCEEEEECCC-CCE-eEE
Confidence 5677788889999999998 77776655432 22444555 45555 6667888999999998 553 455
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
+......+.++.+.+++.+ ++++ +.|..|| .+++.+..+... ...+.++...+++. |..++.++.|..+|. ++
T Consensus 172 ~~~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSC-EEEEETTTEEEEECT-TS
T ss_pred EecCCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCe-EEEEcCCCeEEEECC-CC
Confidence 5555556777777777764 4454 7899999 788877777654 56788888888875 555667888988874 56
Q ss_pred ceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 334 QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
+.+..+.. . ...+..+.+.++|.+..++.++.|..++..
T Consensus 245 ~~~~~~~~--~-~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 245 TEKWRFKT--G-KRIESSPVIGNTDTIYFGSYDGHLYAINPD 283 (330)
T ss_dssp CEEEEEEC--S-SCCCSCCEECTTSCEEEECTTCEEEEECTT
T ss_pred CEeEEeeC--C-CCccccceEcCCCeEEEecCCCCEEEECCC
Confidence 66665432 2 223345666778888778888889998853
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.97 E-value=4.3e-08 Score=88.30 Aligned_cols=210 Identities=10% Similarity=-0.049 Sum_probs=129.0
Q ss_pred ceEEeeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154 153 TVKSWNVCASGTIAFSKVDISEKFSLFGG----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL 222 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 222 (430)
.+..+..... + .+.++|++++++++. .++.|.+||+.+++.+.++......... .......++|
T Consensus 58 v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~--~g~~P~~ia~- 131 (368)
T 1mda_H 58 TLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--VGPRVHIIGN- 131 (368)
T ss_dssp EEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC--BSCCTTSEEE-
T ss_pred EEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc--cCCCcceEEE-
Confidence 4445554432 3 799999999999886 3678999999999998887543100000 0022456788
Q ss_pred ecCCCCEEEEEeC--CCcEEE--EECCCCCcceEEEee---------c---------CCCeEEEEe--------------
Q 014154 223 SIDDHRKFVAGTN--DHQVRL--YDTSAQRRPVMSFDF---------R---------ETPIKAVAE-------------- 266 (430)
Q Consensus 223 ~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~---------~---------~~~i~~~~~-------------- 266 (430)
+||+++++++.. +..|.+ +|+.+ +..+.. + .+.+..+..
T Consensus 132 -SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 132 -CASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp -CTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred -cCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 899999998875 356888 88865 112211 0 000001111
Q ss_pred ------------cCCCCEEEEEeCCCcEEEEEccCC--eEEeeeeCC---------CCCCeEEEEecCCCCeEEEEeC--
Q 014154 267 ------------EPDSFNIYIGNGSGDLASVDIRTG--KLLGCFIGK---------CSGSIRSIARHPTLPIIASCGL-- 321 (430)
Q Consensus 267 ------------sp~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~-- 321 (430)
++++..++..+. +.|.+.|+... +.+..+... .......+.|+|++..++.+..
T Consensus 207 t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~ 285 (368)
T 1mda_H 207 TGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp CTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred eeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence 223333333334 66777777543 222222110 0011122689999988876543
Q ss_pred -------CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccC-CCCceEecCCCCCc
Q 014154 322 -------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAA-DAPMLEIQNGNDTQ 378 (430)
Q Consensus 322 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~-~d~~i~~~~~~~~~ 378 (430)
++.+.++|+.+++.+..+.+.. ....++|+|||+. ++.. .++.|.++|.....
T Consensus 286 ~~~~~~~~~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 286 SRSCLAAAENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred cCcccccCCCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2356699999999999875443 3588999999984 5555 58999999987754
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.95 E-value=2.7e-07 Score=77.63 Aligned_cols=189 Identities=11% Similarity=-0.004 Sum_probs=131.0
Q ss_pred eEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154 154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 233 (430)
++.+......-...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ ... . ..-..+++ . .+.+.+..
T Consensus 46 v~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~-------~FgeGit~--~-g~~Ly~lt 112 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-N-------IFAEGLAS--D-GERLYQLT 112 (268)
T ss_dssp EEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-T-------CCEEEEEE--C-SSCEEEEE
T ss_pred EEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-C-------cceeEEEE--e-CCEEEEEE
Confidence 344444444556788887 4566667778889999999999988777 321 1 11234555 2 23444445
Q ss_pred eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEEEe
Q 014154 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIAR 309 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i~~ 309 (430)
-.++.+.+||..+.+ .+.++..... -..++ ++++.|+.+..++.|.++|..+.+.+..+.... -..++.+.|
T Consensus 113 w~~~~v~V~D~~Tl~-~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQ-RERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp SSSCEEEEEETTTTE-EEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred ccCCEEEEEECCcCc-EEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 578899999999865 4666664322 23343 578888888889999999999999888776421 124567787
Q ss_pred cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc----------ccceEEeeeccccccc
Q 014154 310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH----------LNEVVFDSAFADKEVA 360 (430)
Q Consensus 310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~g~~ 360 (430)
. +|.+.+..-.+..|.+.|.++++.+..+.+.+- .....+.+||+|++..
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 6 776555554678999999999999999876421 2346789999998766
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=8.6e-06 Score=70.25 Aligned_cols=207 Identities=5% Similarity=-0.094 Sum_probs=123.7
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPP 203 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~ 203 (430)
.+++....+.+.++++... .+..+-.........+++++++..|+.+ ...+.|.+++++...........
T Consensus 50 ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~ 120 (267)
T 1npe_A 50 VYWTDISEPSIGRASLHGG---------EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG 120 (267)
T ss_dssp EEEEETTTTEEEEEESSSC---------CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred EEEEECCCCEEEEEecCCC---------CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC
Confidence 4445555667777665321 1122211222467899999976666555 45678999998643222111111
Q ss_pred CCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---CCcEEEEECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEe-C
Q 014154 204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-G 278 (430)
Q Consensus 204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~ 278 (430)
......+++ +|++..|+.+.. .+.|..+++.... ...+. ........++++|++..|+.+. .
T Consensus 121 ---------~~~P~~i~v--d~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 121 ---------LVNPRGIVT--DPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ---------CSSEEEEEE--ETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred ---------CCCccEEEE--eeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence 134678888 776555555443 3688888887432 22222 2234578999999877666555 5
Q ss_pred CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154 279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357 (430)
Q Consensus 279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 357 (430)
.+.|.++|+........+.. ......++.. +..|+.+. ..+.|.++|..+++.+..+.. +. ......+++.|+
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~--~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~-g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG--LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP-HK-QTRLYGITIALS 261 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC--CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC-SS-CCCCCCEEEECS
T ss_pred CCEEEEEecCCCceEEEecC--CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc-cc-ccccceeeecCc
Confidence 57899999975544333333 2344677664 44555444 568999999999998887532 22 112367777777
Q ss_pred cc
Q 014154 358 EV 359 (430)
Q Consensus 358 g~ 359 (430)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 247
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=7.5e-07 Score=80.87 Aligned_cols=197 Identities=10% Similarity=0.058 Sum_probs=128.0
Q ss_pred CCCCEEEE-EeCCCeEEEEECCCC----eeeEeeCCCCCC-CCCCcCCcceeEEEEeecCCCCEEEEEeCC------CcE
Q 014154 172 ISEKFSLF-GGKGVEVNVWDLDKC----EKIWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQV 239 (430)
Q Consensus 172 ~~~~~l~~-~~~d~~i~~~d~~~~----~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i 239 (430)
++.++|++ +..++.|+++|+.+. +....+...... ..+ ......+.. .|++ +++++..+ +.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g---~s~Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG---YSRLHTVHC--GPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC---EEEEEEEEE--CSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC---CCcccceeE--CCCe-EEEEcCCCcCCCCCCeE
Confidence 67777765 456788999999754 444444210000 000 012334455 7888 77776655 789
Q ss_pred EEEECCCCCcceEEEeecCC---CeEEEEecCCCCEEEEEe-------------------CCCcEEEEEccCCeEEeeee
Q 014154 240 RLYDTSAQRRPVMSFDFRET---PIKAVAEEPDSFNIYIGN-------------------GSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~ 297 (430)
.++|..+.+ .+..+..... --..+.|+|+++.+++.. .+.+|.+||+.+++.+.++.
T Consensus 167 ~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 167 LMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCe-EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 999999865 4666653222 234578899999888874 36899999999998888887
Q ss_pred CC-CCCCeEEEEe--cCCCCeEEEEe------CCCcEEEEECCCCcee--eEEEeecc---------------ccceEEe
Q 014154 298 GK-CSGSIRSIAR--HPTLPIIASCG------LDSYLRFWDIKTRQLL--SAVFLKQH---------------LNEVVFD 351 (430)
Q Consensus 298 ~~-~~~~v~~i~~--~~~~~~l~s~~------~dg~i~iwd~~~~~~~--~~~~~~~~---------------~~~~v~~ 351 (430)
.. .......+.| +|++++++.++ .+++|.+|....++.. ..+.+... .......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 52 1134455555 99999887776 5668888776654322 11111110 0133578
Q ss_pred eeccccccc--cccCCCCceEecCCC
Q 014154 352 SAFADKEVA--NAAADAPMLEIQNGN 375 (430)
Q Consensus 352 ~~~s~~g~~--~~~~~d~~i~~~~~~ 375 (430)
+.+|+||++ ++.-..+.|.+|+..
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECS
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEec
Confidence 999999998 666678899999985
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.92 E-value=3.7e-07 Score=89.64 Aligned_cols=286 Identities=12% Similarity=0.074 Sum_probs=165.3
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC--CCCce-EEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP--EDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~ 142 (430)
..|++++.++.|..+|..+|+.+..+.......... ....+ ..+.++. +.++.++.++.+..++...
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG----------DKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB----------TEEEEECTTSEEEEEETTT
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC----------CEEEEEcCCCEEEEEECCC
Confidence 357778888999999999999887765421100000 00000 0011111 4677777777766666432
Q ss_pred cCccccCCCcceEEeeecCCCc--eEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCCCCC--
Q 014154 143 TKVSAESSCSTVKSWNVCASGT--IAFSKVDI--SEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI-- 210 (430)
Q Consensus 143 ~~~~~~~~~~~i~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~-- 210 (430)
.. .+|....... ...+...| .+..++++.. ++.|+.+|..+++.++.+..........
T Consensus 137 G~----------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~ 206 (668)
T 1kv9_A 137 GK----------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYE 206 (668)
T ss_dssp CC----------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred CC----------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccc
Confidence 22 1344322100 00001111 2345555543 5899999999999999876421111000
Q ss_pred --------------------cCCcceeEEEEeecCCCCEEEEEeCCCc-------------------EEEEECCCCCcce
Q 014154 211 --------------------FTPTWFTSAAFLSIDDHRKFVAGTNDHQ-------------------VRLYDTSAQRRPV 251 (430)
Q Consensus 211 --------------------~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~ 251 (430)
........+++ .++..+++.++.++. |..+|..+++. +
T Consensus 207 ~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-~ 283 (668)
T 1kv9_A 207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-A 283 (668)
T ss_dssp SHHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-E
T ss_pred ccccccccccCCccceeeeCCCCccccceEE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-e
Confidence 00011123566 677788888877763 99999999774 4
Q ss_pred EEEee--cC-------CCeEEEEecCCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCC-----------CCCe----
Q 014154 252 MSFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSI---- 304 (430)
Q Consensus 252 ~~~~~--~~-------~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~v---- 304 (430)
-.++. |. .+.....+..+++ .++.++.+|.++++|..+|+.+..+.... ..++
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTT
T ss_pred eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccc
Confidence 44443 21 2233333334664 68899999999999999999885443210 0000
Q ss_pred --------------------EEEEecCCCCeEEEE------------------------------------eCCCcEEEE
Q 014154 305 --------------------RSIARHPTLPIIASC------------------------------------GLDSYLRFW 328 (430)
Q Consensus 305 --------------------~~i~~~~~~~~l~s~------------------------------------~~dg~i~iw 328 (430)
..++++|+..+++.. ..+|.|..|
T Consensus 364 ~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~ 443 (668)
T 1kv9_A 364 VRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAW 443 (668)
T ss_dssp TTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEE
T ss_pred ccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEE
Confidence 125677766655432 134789999
Q ss_pred ECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154 329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~ 378 (430)
|+.+++.+..+..... .....+...+.+ ++++.|+.++.|+.....
T Consensus 444 D~~tG~~~W~~~~~~~----~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 444 DPVKQKAAWKVPYPTH----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp ETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eCCCCcEEEEccCCCC----CcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 9999999887543222 122333344444 778899999999987543
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.76 E-value=0.00021 Score=71.97 Aligned_cols=313 Identities=10% Similarity=0.034 Sum_probs=178.1
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeeeecCCC-----CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP-----HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
...+..|..+ -|.+|+...+ ++....... -..-.+.++.. .++|. |..|+.++-|.+|+..++...
T Consensus 273 ~g~lWigt~~-Gl~~~~~~~~-----~~~~~~~~~~~~~~l~~~~i~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~~~~ 343 (795)
T 4a2l_A 273 QNRLWIGTFN-DLNIYHEGTD-----SFASYSSNPVENGSLSQRSVRSIFM--DSQGG-MWLGTYFGGLNYYHPIRNRFK 343 (795)
T ss_dssp TSCEEEEESS-CEEEEETTTT-----EEEEECCCTTSTTSCSSSCEEEEEE--CTTSC-EEEEESSSCEEEECGGGGSSE
T ss_pred CCCEEEEeCC-hhheEcCCCC-----eEEEEecCCCCCCCCCCCcEEEEEE--eCCcC-EEEEECCCCeEEeCCCcccce
Confidence 3455666655 4778887764 332211111 01123555555 44555 667888788999987655422
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--------
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-------- 160 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-------- 160 (430)
.+... +....-....+.++.. ... +.+..++.++-+..++... +.+..+...
T Consensus 344 -~~~~~-~~~~~l~~~~V~~i~~--d~~-------g~lWiGt~~~Gl~~~~~~~---------~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 344 -NIRNI-PYKNSLSDNVVSCIVE--DKD-------KNLWIGTNDGGLNLYNPIT---------QRFTSYTLQEDESARGI 403 (795)
T ss_dssp -EECCC-TTSSSCSCSSEEEEEE--CTT-------SCEEEEESSSCEEEECTTT---------CCEEEECCC------CC
T ss_pred -EEcCC-CCCCCCCCCeeEEEEE--CCC-------CCEEEEECCCCeEEEcCCC---------CcEEEEecCCCCcccCC
Confidence 22110 0001112234544332 222 4677777776666665321 123333211
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154 161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
....|.++...++++.|.+|+.++-|.+||..+++... +...... .....|.++.. .+++.+.+ |+. +-|.
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~----l~~~~v~~i~~--d~~g~lwi-gt~-~Gl~ 474 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQ----LVNENVYAILP--DGEGNLWL-GTL-SALV 474 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSC----CSCSCEEEEEE--CSSSCEEE-EES-SCEE
T ss_pred CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCC----cCCCeeEEEEE--CCCCCEEE-Eec-Ccee
Confidence 13568899998888856778887789999998765433 2211110 11256888887 66676554 455 4588
Q ss_pred EEECCCCCcceEEEee-------cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee------CCCCCCeEEE
Q 014154 241 LYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSI 307 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~i 307 (430)
+||..++. ...+.. ....|.++...+++++.+ |+. +-|..||..+++. .+. +.....|.++
T Consensus 475 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i 548 (795)
T 4a2l_A 475 RFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCI 548 (795)
T ss_dssp EEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEE
T ss_pred EEeCCCCe--EEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEE
Confidence 89987643 222221 235789999988886554 545 4588899887765 232 1114578999
Q ss_pred EecCCCCeEEEEeCCCcEEEEECCCCceeeEEE-eeccccceEEeeeccccccccccCCCCceEecCC
Q 014154 308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
...++|.+.++. .. -|..||..+++... +. ..+-....+.++...++|.+-.++.. -|..|+.
T Consensus 549 ~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t~~-Gl~~~~~ 612 (795)
T 4a2l_A 549 YEASNGIIWVGT-RE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLSTNR-GISCFNP 612 (795)
T ss_dssp EECTTSCEEEEE-SS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEETT-EEEEEET
T ss_pred EECCCCCEEEEe-CC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEcCC-ceEEEcC
Confidence 998998765544 44 48889987765432 21 12222345788888888888333333 3444544
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.75 E-value=0.00017 Score=72.60 Aligned_cols=319 Identities=9% Similarity=0.031 Sum_probs=179.3
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCC------CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
..+..|..++-+.+|+..++ ++. .+... -....+.++.. .++|. |..|+.+ -|.+||..++...
T Consensus 226 g~lwigt~~~Gl~~~~~~~~-----~~~-~~~~~~~~~~~l~~~~i~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~ 295 (795)
T 4a2l_A 226 TRIWVATEGAGLFLINPKTK-----EIK-NYLHSPSNPKSISSNYIRSLAM--DSQNR-LWIGTFN-DLNIYHEGTDSFA 295 (795)
T ss_dssp TEEEEEEBSSCEEEEETTTT-----EEE-EECCCTTCTTSCSCSBEEEEEE--CTTSC-EEEEESS-CEEEEETTTTEEE
T ss_pred CCEEEEECCCCeEEEeCCCC-----eEE-EeecCCCCccccCCCeEEEEEE--cCCCC-EEEEeCC-hhheEcCCCCeEE
Confidence 34555655545778887764 222 22211 01122445555 44555 5556655 5888987665532
Q ss_pred ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec------CC
Q 014154 89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC------AS 162 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~ 162 (430)
. +.........-....+.++.. ... +.+..++.++-+..++.... .+..+... ..
T Consensus 296 ~-~~~~~~~~~~l~~~~i~~i~~--D~~-------g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~~~~l~~ 356 (795)
T 4a2l_A 296 S-YSSNPVENGSLSQRSVRSIFM--DSQ-------GGMWLGTYFGGLNYYHPIRN---------RFKNIRNIPYKNSLSD 356 (795)
T ss_dssp E-ECCCTTSTTSCSSSCEEEEEE--CTT-------SCEEEEESSSCEEEECGGGG---------SSEEECCCTTSSSCSC
T ss_pred E-EecCCCCCCCCCCCcEEEEEE--eCC-------cCEEEEECCCCeEEeCCCcc---------cceEEcCCCCCCCCCC
Confidence 2 211000001112234544332 222 56777777666666653211 12222111 23
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..|.++..++++++. .|+.++-|..|+..++....-.......... .....|.++.. .+++.+|..|+.++-|.+|
T Consensus 357 ~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~~i~~--d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARG-IGSNNIKAVYV--DEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp SSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------C-CSCSCEEEEEE--ETTTTEEEEEETTTEEEEE
T ss_pred CeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccC-CCCccEEEEEE--cCCCCEEEEEeCcCceeEE
Confidence 568899988877655 4777778999998776543222111000000 01255888887 6777757778887889999
Q ss_pred ECCCCCcceEEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC-----CCCCCeEEEEecCC
Q 014154 243 DTSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-----KCSGSIRSIARHPT 312 (430)
Q Consensus 243 d~~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~i~~~~~ 312 (430)
|..+++ ...+. .+...|.++...+++.+.+ |+.+ -|.+||..+++....... .....|.++...++
T Consensus 433 d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~ 508 (795)
T 4a2l_A 433 HRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSH 508 (795)
T ss_dssp ETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTT
T ss_pred eCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCC
Confidence 998754 33333 1345789999888876544 5554 488999888765432211 11357899999988
Q ss_pred CCeEEEEeCCCcEEEEECCCCceeeEEEe----eccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 313 LPIIASCGLDSYLRFWDIKTRQLLSAVFL----KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
|.+.+.. .. -|..||..+++. .+.. .+-....|.++...++|.+..++.. -|..|+..
T Consensus 509 g~lWigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~ 570 (795)
T 4a2l_A 509 KRLWIGG-EE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK 570 (795)
T ss_dssp CCEEEEE-SS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred CCEEEEe-CC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence 8765544 44 488999877665 2211 1112345788999999998333333 46666653
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.75 E-value=3.7e-06 Score=80.86 Aligned_cols=279 Identities=14% Similarity=0.104 Sum_probs=160.7
Q ss_pred eeEEeec-CCeEEEecC-CCCcccceeeccCCCCC------CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEE
Q 014154 67 LLAVARK-NGLTDILNP-LNGDLRVAISNAGDSGA------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 67 ~l~~g~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~ 138 (430)
.|++++. ++.|..+|. .+|+.+..+..-..... ......+ .+.. +.++.++.++.+..+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~v~v~~~dg~l~al 130 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGL---AYGA----------GQIVKKQANGHLLAL 130 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCC---EEET----------TEEEEECTTSEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccccccccc---EEEC----------CEEEEEeCCCEEEEE
Confidence 4666666 889999999 89998877653111000 0000111 1111 467777777776666
Q ss_pred EeeecCccccCCCcceEEeeecCCC-----ceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCC
Q 014154 139 SIEVTKVSAESSCSTVKSWNVCASG-----TIAF-SKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~-----~i~~-~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~ 206 (430)
+..... + +|...... .+.+ ..+ .+..+++++. ++.|+.+|..+++.++++......
T Consensus 131 D~~tG~---------~-~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 198 (571)
T 2ad6_A 131 DAKTGK---------I-NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD 198 (571)
T ss_dssp ETTTCC---------E-EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred ECCCCC---------E-EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCc
Confidence 643222 1 34432221 1111 011 2345666655 789999999999999887643211
Q ss_pred ------CC-C-------------------C---cCCcceeEEEEeecCCCCEEEEEeCC----------------CcEEE
Q 014154 207 ------SL-G-------------------I---FTPTWFTSAAFLSIDDHRKFVAGTND----------------HQVRL 241 (430)
Q Consensus 207 ------~~-~-------------------~---~~~~~v~~~~~~~~~~~~~l~s~~~d----------------g~i~i 241 (430)
.. . . ........+++ .++...++.++.+ +.|..
T Consensus 199 ~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~--d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~A 276 (571)
T 2ad6_A 199 DSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAY--DPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWG 276 (571)
T ss_dssp HHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEE--ETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEE
T ss_pred cccccCcccccccccccccccccccCcccceecCCCCeeeeEEE--cCCCCeEEEECCCCccccCCccCCCceeEEEEEE
Confidence 00 0 0 00000012455 4555666666532 35999
Q ss_pred EECCCCCcceEEEee--cC--------CCeEEEEecCCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCCC-------
Q 014154 242 YDTSAQRRPVMSFDF--RE--------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCS------- 301 (430)
Q Consensus 242 wd~~~~~~~~~~~~~--~~--------~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------- 301 (430)
+|..+++. +-.++. |. .++. +...++|+ .++.++.+|.++++|..+++.+..+.....
T Consensus 277 ld~~tG~~-~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~ 354 (571)
T 2ad6_A 277 RDLDTGMA-KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV 354 (571)
T ss_dssp EETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EecCCCcE-EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccc
Confidence 99999774 444432 11 1221 22234673 677888999999999999998877653210
Q ss_pred -----CCe--------------------------EEEEecCCCCeEEEEe------------------------------
Q 014154 302 -----GSI--------------------------RSIARHPTLPIIASCG------------------------------ 320 (430)
Q Consensus 302 -----~~v--------------------------~~i~~~~~~~~l~s~~------------------------------ 320 (430)
.++ ..++++|+..+|+...
T Consensus 355 d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 434 (571)
T 2ad6_A 355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred cccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence 111 2356788777666553
Q ss_pred -------CCCcEEEEECCCCceeeEEEeeccccceEEeeeccc-cccccccCCCCceEecCCCCCc
Q 014154 321 -------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVANAAADAPMLEIQNGNDTQ 378 (430)
Q Consensus 321 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~~~~~~d~~i~~~~~~~~~ 378 (430)
.+|.|..||+.+++.+.++..... +....+.. ++.+++++.|+.|+.||.....
T Consensus 435 ~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~----~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA----AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCCCCCeEEEEECCCCCEEEEecCCCC----ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 357899999999999888643322 12222232 4555668889999999987644
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=7.3e-06 Score=69.75 Aligned_cols=143 Identities=10% Similarity=-0.049 Sum_probs=97.9
Q ss_pred EEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154 176 FSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254 (430)
Q Consensus 176 ~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 254 (430)
.|+. .-.++.+.++|..+.+.+.++...... . ..+ ++++..++++..++.|.++|..+.+. +..+
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-------g--~gl----t~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I 142 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-------G--WGL----ATDGKILYGSDGTSILYEIDPHTFKL-IKKH 142 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEEEEECCSSS-------C--CEE----EECSSSEEEECSSSEEEEECTTTCCE-EEEE
T ss_pred EEEEEEecCCEEEEEECCCCcEEEEEECCCCC-------e--EEE----EECCCEEEEECCCCeEEEEECCCCcE-EEEE
Confidence 4443 345778999999999888877543100 1 223 34777777777788999999998653 4544
Q ss_pred eec-----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------------CCCCeEEEEecCCCCe-E
Q 014154 255 DFR-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPI-I 316 (430)
Q Consensus 255 ~~~-----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~-l 316 (430)
.-. -..+..+.|. ++...+....++.|.+.|..+++.+..+... .....+.|+|+|+++. +
T Consensus 143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 422 1246788888 6754444446789999999999998888642 0135689999999865 5
Q ss_pred EEEeCCCcEEEEECCCC
Q 014154 317 ASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 317 ~s~~~dg~i~iwd~~~~ 333 (430)
+++...+.|++.++...
T Consensus 222 VTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 222 VTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTCSEEEEEEEEEC
T ss_pred EECCCCCeEEEEEEecc
Confidence 55557788888887654
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.69 E-value=1.1e-05 Score=67.86 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=86.0
Q ss_pred CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--C-
Q 014154 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E- 258 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~- 258 (430)
.++.+.+||..+.+.+.++.... . . ..+++ ++..|+.+..++.|.++|..+.+. +..+.-. .
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~-e-------G--~glt~----dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~ 169 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDG-E-------G--WGLTH----NDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGE 169 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS-C-------C--CCEEE----CSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTE
T ss_pred eCCEEEEEECccCcEEEEEECCC-C-------c--eEEec----CCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCc
Confidence 47789999999999888876532 0 1 23333 566666666678899999998653 5554431 1
Q ss_pred --CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-----------CCCCeEEEEecCCCCeEEEEeC
Q 014154 259 --TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-----------CSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 259 --~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
..++.+.|. +|+..+..-.++.|.+.|.++++.+..+... .....+.|+|+|+++.|+..+.
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 334567776 6755544446889999999999998877642 0135689999999887777664
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.65 E-value=2.1e-05 Score=69.91 Aligned_cols=200 Identities=10% Similarity=-0.042 Sum_probs=121.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeC-------
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN------- 235 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~------- 235 (430)
.+..++++++...|+++...+.|..+|..++............ .......+++ .+ ++.+.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGV-----PFKWLYAVTV--DQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTE-----ECSCEEEEEE--CTTTCCEEEEESCSSCCTTC
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCC-----cccccceEEE--ecCCCEEEEECCcccccccc
Confidence 5788999984445566655566888887755322111110000 0134677888 78 8877666432
Q ss_pred ----------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCe--EEeeeeCCCCC
Q 014154 236 ----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK--LLGCFIGKCSG 302 (430)
Q Consensus 236 ----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~ 302 (430)
++.|..||..++. +..+.........|+++|++++|+++ +..+.|.+|++.... ....+... .+
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g 230 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN 230 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS
T ss_pred cceehcccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC
Confidence 3678889987644 22222222345679999999877666 456889999987421 11122112 33
Q ss_pred CeEEEEecCCCCeEEEEeC----------CCcEEEEECCCCceeeEEEeecc-ccceEEeeeccccccc-cccCCCCceE
Q 014154 303 SIRSIARHPTLPIIASCGL----------DSYLRFWDIKTRQLLSAVFLKQH-LNEVVFDSAFADKEVA-NAAADAPMLE 370 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~-~~~~~d~~i~ 370 (430)
...+++.++|.+.++... .+.|..+|. .++.+..+..... .-..+..+++ .++.+ ++....+.|.
T Consensus 231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG 307 (322)
T ss_dssp -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence 788999999987666544 467888886 4777776543221 0122455555 46666 7777788899
Q ss_pred ecCCCC
Q 014154 371 IQNGND 376 (430)
Q Consensus 371 ~~~~~~ 376 (430)
.++...
T Consensus 308 ~~~~~~ 313 (322)
T 2fp8_A 308 ILVYDK 313 (322)
T ss_dssp EEEC--
T ss_pred EEeccc
Confidence 988754
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.61 E-value=2.7e-05 Score=65.83 Aligned_cols=200 Identities=6% Similarity=-0.000 Sum_probs=131.2
Q ss_pred CceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154 163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL 241 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 241 (430)
..+..++++|+++.|+ +...++.|...|.. ++.+..+.... ......+++ .+++.++++.-.++.+.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g--------~~D~EGIa~--~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF--------VKDLETIEY--IGDNQFVISDERDYAIYV 95 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS--------CSSEEEEEE--CSTTEEEEEETTTTEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC--------CCChHHeEE--eCCCEEEEEECCCCcEEE
Confidence 5689999999776655 46678889999997 77776653311 034667788 677776666657788999
Q ss_pred EECCCCCc--ceEEEee------cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc---CCeEEeeeeC------CCCCCe
Q 014154 242 YDTSAQRR--PVMSFDF------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---TGKLLGCFIG------KCSGSI 304 (430)
Q Consensus 242 wd~~~~~~--~~~~~~~------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~------~~~~~v 304 (430)
+++..... .+..... .......|+|+|.++.|+++.......+|.+. ....+..+.. .....+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98876442 1222221 23346899999999888887776655666554 1111121211 113457
Q ss_pred EEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccc-c-----ceEEeeeccccccccccCCCCceEecCC
Q 014154 305 RSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL-N-----EVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 305 ~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~-----~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
.+++++|.. ++++.......|.++|.. |+.+..+.+.... . ..--.++|.++|.+..++..+.++.|..
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 899999965 455666677889999965 6677776665321 1 1247899999999855577777777754
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.61 E-value=1.8e-05 Score=76.19 Aligned_cols=286 Identities=12% Similarity=0.100 Sum_probs=158.9
Q ss_pred eeEEeec-CCeEEEecC-CCCcccceeeccCCCC-----CC-CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEE
Q 014154 67 LLAVARK-NGLTDILNP-LNGDLRVAISNAGDSG-----AQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR 138 (430)
Q Consensus 67 ~l~~g~~-dg~i~iwd~-~~~~~~~~~~~~~~~~-----~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~ 138 (430)
.|++++. ++.|.-+|. .+|+.+..+..-.... .. ..... +.+++... ....+++.++.++.+..+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g---~av~p~~g----~~~~rV~v~t~dg~l~Al 136 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRG---LAYWPGDG----KTPALILKTQLDGNVAAL 136 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCC---CEEECCCS----SSCCEEEEECTTSEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccc---eEEEecCC----cceeEEEEEcCCCEEEEE
Confidence 4667776 889999999 8999887765421100 00 00011 22211111 000127777777766555
Q ss_pred EeeecCccccCCCcceEEeeecCCC-----ceEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEeeCCCCCC
Q 014154 139 SIEVTKVSAESSCSTVKSWNVCASG-----TIAF-SKVDISEKFSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKN 206 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~i~~~~~~~~~-----~i~~-~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~ 206 (430)
+.... .+ +|...... .+.+ ..+ .+..+++++ .++.|+.+|..+++.++.+......
T Consensus 137 Da~TG---------~~-~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~ 204 (599)
T 1w6s_A 137 NAETG---------ET-VWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPD 204 (599)
T ss_dssp ETTTC---------CE-EEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred ECCCC---------CE-EEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCc
Confidence 54322 21 34432221 1111 011 134566555 3789999999999999887653211
Q ss_pred CC-------CC-------------------c--CCcce-eEEEEeecCCCCEEEEEeCC----------------CcEEE
Q 014154 207 SL-------GI-------------------F--TPTWF-TSAAFLSIDDHRKFVAGTND----------------HQVRL 241 (430)
Q Consensus 207 ~~-------~~-------------------~--~~~~v-~~~~~~~~~~~~~l~s~~~d----------------g~i~i 241 (430)
.. .. . ....+ ..+++ .+...+++.++.+ +.|.-
T Consensus 205 ~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~--d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 205 KDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAY--DPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp HHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEE--ETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred cccccccccccccccccccccccccCCCcceecCCCccccceeE--eCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 00 00 0 00000 12344 5566777777655 37999
Q ss_pred EECCCCCcceEEEeecC----------CCeEEEEec-CCC---CEEEEEeCCCcEEEEEccCCeEEeeeeCCC-------
Q 014154 242 YDTSAQRRPVMSFDFRE----------TPIKAVAEE-PDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKC------- 300 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~----------~~i~~~~~s-p~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------- 300 (430)
+|..+++. +-.++... .++. +... .+| ..++.++.+|.++++|.++|+.+.......
T Consensus 283 ld~~TG~~-~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 283 RDADTGEA-KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EeCCCCce-eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 99999774 44444321 1121 2222 467 567778899999999999999887665210
Q ss_pred -----CCCe--------------------------EEEEecCCCCeEEEE------------------------------
Q 014154 301 -----SGSI--------------------------RSIARHPTLPIIASC------------------------------ 319 (430)
Q Consensus 301 -----~~~v--------------------------~~i~~~~~~~~l~s~------------------------------ 319 (430)
..++ ..++++|+..++++.
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 0111 134566665555442
Q ss_pred ---e------CCCcEEEEECCCCceeeEEEeeccccceEEeeecc-ccccccccCCCCceEecCCCCCcc
Q 014154 320 ---G------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 320 ---~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~~~~~~~~ 379 (430)
+ .+|.|..||+.+++.+........ ...-... ..+.++.++.|+.++.||......
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA----VWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC----ccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 1 357899999999999887543221 1111122 234446688899999999876543
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.59 E-value=7.3e-05 Score=64.33 Aligned_cols=195 Identities=9% Similarity=-0.026 Sum_probs=120.9
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEE
Q 014154 163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR 240 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~ 240 (430)
..+..+++++++..|+.+. .++.|..+++............ ......+++ .+++. ++++-...+.|.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~p~~ia~--d~~~~~lyv~d~~~~~I~ 104 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD---------LGSPEGIAL--DHLGRTIFWTDSQLDRIE 104 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---------CCCEEEEEE--ETTTTEEEEEETTTTEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC---------CCCccEEEE--EecCCeEEEEECCCCEEE
Confidence 3567899999766666554 5678999998765433222211 134678888 67554 445555677899
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCCeEEeeee-CCCCCCeEEEEecCCCCeE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l 316 (430)
++++..... .............++++|++..|+.+.. .+.|..+++.. .....+. .. ......++++|++..|
T Consensus 105 ~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~-~~~P~gia~d~~~~~l 181 (267)
T 1npe_A 105 VAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDN-LGLPNGLTFDAFSSQL 181 (267)
T ss_dssp EEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTT-CSCEEEEEEETTTTEE
T ss_pred EEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECC-CCCCcEEEEcCCCCEE
Confidence 999875332 2222222246789999997666666654 36888888753 3222332 22 3467899999987666
Q ss_pred EEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 317 ASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 317 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+.+ ...+.|.++|+........ ..+. .. ...++.. .+.+ ++....+.|..++...
T Consensus 182 yv~d~~~~~I~~~~~~g~~~~~~--~~~~-~~-P~gi~~d-~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 182 CWVDAGTHRAECLNPAQPGRRKV--LEGL-QY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEEETTTTEEEEEETTEEEEEEE--EECC-CS-EEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCEEEEEecCCCceEEE--ecCC-CC-ceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 555 4567899999975443332 2221 22 2455554 3444 6555678888888764
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=2.8e-05 Score=74.89 Aligned_cols=284 Identities=14% Similarity=0.123 Sum_probs=158.1
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCce-EEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV 145 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~ 145 (430)
.|++++.++.|..+|..+|+.+..+....+....+....+ ..+.++. +.++.++.++.+..++.....
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~----------~~v~~~t~dg~l~AlD~~TG~- 138 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYG----------DKVFFGTLDASVVALNKNTGK- 138 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEET----------TEEEEEETTTEEEEEESSSCC-
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEEC----------CEEEEEeCCCEEEEEECCCCC-
Confidence 3666666445999999999988877652221100000000 0011111 467777777766665543322
Q ss_pred cccCCCcceEEeeecCCC-----ceE---EEEEc-CCCC-EEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCC--
Q 014154 146 SAESSCSTVKSWNVCASG-----TIA---FSKVD-ISEK-FSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNS-- 207 (430)
Q Consensus 146 ~~~~~~~~i~~~~~~~~~-----~i~---~~~~~-~~~~-~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~-- 207 (430)
+ +|...... .+. .+.-. .+++ .+++++. ++.|+.+|..+++.++.........
T Consensus 139 --------~-~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p 209 (582)
T 1flg_A 139 --------V-VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGR 209 (582)
T ss_dssp --------E-EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEE
T ss_pred --------E-EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccccc
Confidence 1 34332111 111 01101 1223 5666553 7899999999999998764321000
Q ss_pred -----------CC----------------C----cCCcceeEEEEeecCCCCEEEEEeC--------------------C
Q 014154 208 -----------LG----------------I----FTPTWFTSAAFLSIDDHRKFVAGTN--------------------D 236 (430)
Q Consensus 208 -----------~~----------------~----~~~~~v~~~~~~~~~~~~~l~s~~~--------------------d 236 (430)
.. . ....+ ..+++ .|...+++.+.. |
T Consensus 210 ~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w-~~~a~--d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d 286 (582)
T 1flg_A 210 LNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPW-QSASF--DAETNTIIVGAGNPGPWNTWARTAKGGNPHDYD 286 (582)
T ss_dssp ETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCC-SCCEE--ETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCC
T ss_pred ccCcccccccccccccCCCccccccccccccccCCcccc-CCceE--cCCCCEEEEeCCCCCcccCcccccCCCcccccC
Confidence 00 0 00011 23455 566677776663 2
Q ss_pred ----CcEEEEECCCCCcceEEEee--cC--------CCeEEEEec-CCCC---EEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154 237 ----HQVRLYDTSAQRRPVMSFDF--RE--------TPIKAVAEE-PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 237 ----g~i~iwd~~~~~~~~~~~~~--~~--------~~i~~~~~s-p~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~ 298 (430)
+.|.-+|..+++. +-.++. |. .++. +... .+|+ .++.++.+|.++++|.++|+.+..+..
T Consensus 287 ~~~~~~v~AlD~~TG~~-~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 287 SLYTSGQVGVDPSSGEV-KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp CTTCSEEEEECTTTCCE-EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred CcccceEEEEeCCCCCE-EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 5899999999875 444432 21 1221 1221 4663 788899999999999999998876654
Q ss_pred CCC------------CCe--------------------------------EEEEecCCCCeEEEEe--------------
Q 014154 299 KCS------------GSI--------------------------------RSIARHPTLPIIASCG-------------- 320 (430)
Q Consensus 299 ~~~------------~~v--------------------------------~~i~~~~~~~~l~s~~-------------- 320 (430)
... .++ ..++++|+..++++..
T Consensus 365 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~ 444 (582)
T 1flg_A 365 VDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSY 444 (582)
T ss_dssp SSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCC
T ss_pred ccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccc
Confidence 310 000 1345666555554432
Q ss_pred -------------------CCCcEEEEECCCCceeeEEEeeccccceEEeeecc-ccccccccCCCCceEecCCCCCcc
Q 014154 321 -------------------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGNDTQE 379 (430)
Q Consensus 321 -------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~~~~~~~~ 379 (430)
.+|.|..||+.+++.+.+...... +..-... ..+.+++++.|+.++.||....+.
T Consensus 445 ~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 445 TKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP----LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC----CCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC----CcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 368899999999999887543322 1111112 244557788999999999876543
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.52 E-value=0.00022 Score=59.47 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=86.7
Q ss_pred EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--
Q 014154 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-- 257 (430)
Q Consensus 180 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-- 257 (430)
.-.++.+.+||..+.+.+.++.... . . ..++. ++..|+.+..++.|.++|..+.+. +..+.-.
T Consensus 81 tw~~~~v~v~D~~tl~~~~ti~~~~-~-------G--wglt~----dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~ 145 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLTPRARFRYPG-E-------G--WALTS----DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAG 145 (243)
T ss_dssp ESSSSEEEEEETTTTEEEEEEECSS-C-------C--CEEEE----CSSCEEEECSSSEEEEECTTTCCE-EEEEECEET
T ss_pred EeeCCEEEEEECCcCcEEEEEeCCC-C-------c--eEEee----CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccC
Confidence 3457789999999999988876532 0 2 23444 566666666788999999998653 5554432
Q ss_pred C---CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------------CCCCeEEEEecCCCCeEEEEeC
Q 014154 258 E---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 258 ~---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
. ..++.+.+. +|+..+..-.+..|.+.|.++++.+..+... .....+.|+++|++..|+..+.
T Consensus 146 g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 146 GRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 1 345666765 5654444446789999999999998877622 1235689999998877666653
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=0.00082 Score=67.46 Aligned_cols=318 Identities=13% Similarity=0.115 Sum_probs=171.9
Q ss_pred cceeeecCCCceEEEEccCCCCCcceeeeecCCC------CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154 15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR 88 (430)
Q Consensus 15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~ 88 (430)
..+..|..+ -+.+||..++ ++. .+... .....+.++.. .++|. |..|+..+-|.++|..++...
T Consensus 222 g~lwigt~~-Gl~~~d~~~~-----~~~-~~~~~~~~~~~l~~~~i~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~ 291 (781)
T 3v9f_A 222 GNIWIGTSK-GLALFNANTE-----TFT-NFHNNPGNIHGALSSYIFSIKQ--LKDNK-LWIATELNGIMILDLQQNQFL 291 (781)
T ss_dssp CCEEEEETT-EEEEEETTTT-----EEE-C-----------CCCCEEEEEE--CTTSE-EEEEESSSCEEEEETTCC---
T ss_pred CCEEEEeCC-cHheECCCCC-----cEE-EEEcCCCccccccCceEEEEEE--CCCCC-EEEEeCCCCeEEECCCCCeee
Confidence 445556555 4777887664 222 22111 01122445554 44555 666766566888888665532
Q ss_pred ceee----c--cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee---
Q 014154 89 VAIS----N--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--- 159 (430)
Q Consensus 89 ~~~~----~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~--- 159 (430)
.... . ............+.++. .... +.+-.++.++-+..++.... .+..+..
T Consensus 292 ~~~~~~f~~~~~~~~~~~l~~~~v~~i~--~D~~-------g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~ 353 (781)
T 3v9f_A 292 LPEQIRFEFIREGDNNYSLSNASARYIF--QDSF-------NNIWIGTWGGGINFISNAPP---------TFHTWSYSPT 353 (781)
T ss_dssp ------CEEECBCSSTTSBSSSCEEEEE--ECSS-------CCEEEEEBSSCEEEECSSCC---------SCEEEC----
T ss_pred eeeccccccccCCCCCCCCCCCeEEEEE--EeCC-------CCEEEEecCCeEEEeCCCCC---------cceeeccCcc
Confidence 2111 0 00000111223444332 2222 46666776665655543211 2222211
Q ss_pred ------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154 160 ------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG 233 (430)
Q Consensus 160 ------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 233 (430)
-....|.++...+++.+. .|+.++-|..|+..++.... +.... . .....|.++.. .+++. |..|
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~----~-~~~~~v~~i~~--d~~g~-lWig 423 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY-NKENR----E-LLSNSVLCSLK--DSEGN-LWFG 423 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC-C----------CCCSBEEEEEE--CTTSC-EEEE
T ss_pred ccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE-ccCCC----C-CCCcceEEEEE--CCCCC-EEEE
Confidence 123568889888777654 57766679999986543321 11100 0 11256888877 56665 4557
Q ss_pred eCCCcEEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC----CCCCeEE
Q 014154 234 TNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRS 306 (430)
Q Consensus 234 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~ 306 (430)
+.++-|..+|..+++ ...+.. ....|.++...+++. |..|+. +-|..||..+++........ ....|.+
T Consensus 424 t~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 424 TYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp ETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred eccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence 777789999987643 333321 245789998888775 555666 45889998876543222111 1357899
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
+...++|.+.+ |+.++-|..||..+++... +.. .+-....|.++...++|.+-.++..|.+..|+...
T Consensus 500 i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 500 IAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp EEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred EEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 99988887554 4443348889887665432 211 11123457888888999884444466547777643
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.0014 Score=65.81 Aligned_cols=319 Identities=10% Similarity=0.002 Sum_probs=171.6
Q ss_pred CcceeeecCCCceEEEEccCCCCCcceeee-------ecC-CC-CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154 14 PLRALTFDSLGLIKVIEARGEHGGVPKVVE-------RWG-DP-HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN 84 (430)
Q Consensus 14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~-------~~~-~~-~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~ 84 (430)
...+..|...+-|.+++...+. ...... ... .. -..-.+.++.. .++|. |-.|+.++-|..++..+
T Consensus 268 ~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~--D~~g~-lWigt~~~Gl~~~~~~~ 342 (781)
T 3v9f_A 268 DNKLWIATELNGIMILDLQQNQ--FLLPEQIRFEFIREGDNNYSLSNASARYIFQ--DSFNN-IWIGTWGGGINFISNAP 342 (781)
T ss_dssp TSEEEEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEE--CSSCC-EEEEEBSSCEEEECSSC
T ss_pred CCCEEEEeCCCCeEEECCCCCe--eeeeeccccccccCCCCCCCCCCCeEEEEEE--eCCCC-EEEEecCCeEEEeCCCC
Confidence 3456666664557778877641 100000 000 00 01122455555 34554 67787778899998765
Q ss_pred CcccceeeccCC--CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee---e
Q 014154 85 GDLRVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---V 159 (430)
Q Consensus 85 ~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~---~ 159 (430)
+... .+..... ....-....+.++.. ... +.+..++.++-+..++.... .+..+. .
T Consensus 343 ~~~~-~~~~~~~~~~~~~l~~~~v~~i~~--d~~-------g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~ 403 (781)
T 3v9f_A 343 PTFH-TWSYSPTQMNESSLSNKVVSSVCD--DGQ-------GKLWIGTDGGGINVFENGKR---------VAIYNKENRE 403 (781)
T ss_dssp CSCE-EEC----CCCSSCCSSSCEEEEEE--CTT-------SCEEEEEBSSCEEEEETTEE---------EEECC-----
T ss_pred Ccce-eeccCccccccCCCCCcceEEEEE--cCC-------CCEEEEeCCCcEEEEECCCC---------eEEEccCCCC
Confidence 5422 2211000 000111234544332 222 46667776665666653211 111111 1
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239 (430)
Q Consensus 160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 239 (430)
.....|.++...+++.+.+ |+.++-|..++..+++... +.... .....|.++.. .+++. |..|+. +-|
T Consensus 404 ~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~------~~~~~v~~i~~--d~~g~-lwigt~-~Gl 471 (781)
T 3v9f_A 404 LLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEK------NELLDVRVFYE--DKNKK-IWIGTH-AGV 471 (781)
T ss_dssp CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTT------TCCCCEEEEEE--CTTSE-EEEEET-TEE
T ss_pred CCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCC------CCCCeEEEEEE--CCCCC-EEEEEC-Cce
Confidence 1235688888887776554 7776779999987765432 22110 01256788877 56665 555566 568
Q ss_pred EEEECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC---CCCCCeEEEEecC
Q 014154 240 RLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHP 311 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~ 311 (430)
..||..++.. ....... ...|.++...++|.+. .|+.++-|..||..+++.. .+.. .....|.++...+
T Consensus 472 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 472 FVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS 548 (781)
T ss_dssp EEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECT
T ss_pred EEEeCCCCeE-EecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC
Confidence 8999886442 2222111 3578999988888654 5555444788998776543 3321 1135789999988
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccccccCCCCceEecCC
Q 014154 312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
+|.+.++ +.+|.|..||..+++... +.. .+-....+.++...++|.+-.++..| |..|+.
T Consensus 549 ~g~lWi~-T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~~ 609 (781)
T 3v9f_A 549 KGQMWLA-TGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWASTNTG-ISCYIT 609 (781)
T ss_dssp TSCEEEE-ETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEECSSC-EEEEET
T ss_pred CCCEEEE-ECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEEcCCc-eEEEEC
Confidence 8875554 447755889987765432 211 12123346788888888884444444 444443
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.43 E-value=2e-05 Score=78.65 Aligned_cols=195 Identities=13% Similarity=0.065 Sum_probs=113.0
Q ss_pred ceEEEEEc-CCCCEEEEEeC-CC----eEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154 164 TIAFSKVD-ISEKFSLFGGK-GV----EVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236 (430)
Q Consensus 164 ~i~~~~~~-~~~~~l~~~~~-d~----~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 236 (430)
.+...+|+ |++++|+.+.. +| .|+++|+.++ +.+. .. + ......++| +||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~------~--~~~~~~~~W--spDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DK------V--SGTNGEIVW--GPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CC------E--EEECSCCEE--CSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---cc------c--cCceeeEEE--ecCCCEEEEEEEC
Confidence 56788999 99998886543 22 5999999987 5321 00 0 012346788 8999888777665
Q ss_pred -----CcEEEEECCCCCcc-eEEEee-cCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCC--eE-EeeeeCCCCCC
Q 014154 237 -----HQVRLYDTSAQRRP-VMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTG--KL-LGCFIGKCSGS 303 (430)
Q Consensus 237 -----g~i~iwd~~~~~~~-~~~~~~-~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~--~~-~~~~~~~~~~~ 303 (430)
..|+++++.++... ...+.. .......+.|+|||++|+..+. ...|+++|+.++ +. +..+.......
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 36888888875421 233332 2234678899999999887663 346888999875 22 13333322455
Q ss_pred eEEEEecCCCCeEEEEeCC----CcEEEEECCCCceeeE-EEeeccccceEEeeeccccccccccCCCCceEec
Q 014154 304 IRSIARHPTLPIIASCGLD----SYLRFWDIKTRQLLSA-VFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ 372 (430)
Q Consensus 304 v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~ 372 (430)
...+.|+..+.+++....+ ..|..+++.++..... + +.......+..+.+..+.-+++...++..++|
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l-i~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL-VDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE-ECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE-ECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 5666665544444554443 3577777765321111 1 22222223455555432222555666654444
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.42 E-value=3.4e-05 Score=68.47 Aligned_cols=201 Identities=7% Similarity=-0.085 Sum_probs=121.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EeeCCCCCC---------CCCCcCCcceeEEEEeecC-CCCEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKN---------SLGIFTPTWFTSAAFLSID-DHRKFVA 232 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~-~~~~l~s 232 (430)
...++++++++++++++..++.|..|+..++... +........ .........+..+++ .+ +++ |++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~--~~~~g~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY--NLQNNQ-LYI 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE--ETTTTE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEE--cCCCCc-EEE
Confidence 4567888999887888888999999998765432 111110000 000000124678888 66 554 555
Q ss_pred EeCCCcEEEEECCCCCcceEEEee-----cCCCeEEEEecC-CCCEEEEEeC-----------------CCcEEEEEccC
Q 014154 233 GTNDHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEP-DSFNIYIGNG-----------------SGDLASVDIRT 289 (430)
Q Consensus 233 ~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~sp-~~~~l~~~~~-----------------d~~i~iwd~~~ 289 (430)
+...+.|..+|..++. +..+.. .......+++.+ +|++.++-.. ++.|..||..+
T Consensus 97 ~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 5555568888877532 222211 113467899999 8876665432 36788999877
Q ss_pred CeEEeeeeCCCCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCc--eeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQ--LLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD 365 (430)
Q Consensus 290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~ 365 (430)
++....... ......++|+|++.+|+.+ ...+.|.+|++.... ....+ .. . .. ...+++.++|.+ ++...
T Consensus 175 ~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~-~~-~-~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 175 KETTLLLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL-VK-I-PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TEEEEEEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE-EE-C-SS-EEEEEECTTSCEEEEEEE
T ss_pred CEEEEeccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE-Ee-C-CC-CCCeEECCCCCEEEEecC
Confidence 765433322 2345789999999866555 556889999987532 11121 11 1 22 477899999988 44433
Q ss_pred ----------CCceEecCCC
Q 014154 366 ----------APMLEIQNGN 375 (430)
Q Consensus 366 ----------d~~i~~~~~~ 375 (430)
.+.|..++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT
T ss_pred cccccccCCCccEEEEECCC
Confidence 3567777654
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.40 E-value=0.00027 Score=59.45 Aligned_cols=170 Identities=14% Similarity=0.027 Sum_probs=108.8
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP 204 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 204 (430)
.+++.+.+|.+.++++.... .++.. +....--..+++.. +.+.+..-.++.+.+||..+.+.+.++....
T Consensus 67 Ly~stG~~g~v~~iD~~Tgk--------v~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 67 FFESTGHQGTLRQLSLESAQ--------PVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEEEETTTTEEEECCSSCSS--------CSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred EEEEcCCCCEEEEEECCCCc--------EEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 66677777777766655332 22222 32221223355542 2333344468899999999999988876532
Q ss_pred CCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee--cC---CCeEEEEecCCCCEEEEEeCC
Q 014154 205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RE---TPIKAVAEEPDSFNIYIGNGS 279 (430)
Q Consensus 205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~sp~~~~l~~~~~d 279 (430)
.-..+++ ++..|+.+..++.|.++|..+.+. +..+.- +. ..++.+.|. +|...+..-.+
T Consensus 137 ----------eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 137 ----------EGWGLCY----WNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp ----------CCCCEEE----ETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred ----------ceeEEec----CCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 1133444 677777777789999999998653 555443 21 245667776 67544444467
Q ss_pred CcEEEEEccCCeEEeeeeCC------------CCCCeEEEEecCCCCeEEEEe
Q 014154 280 GDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 280 ~~i~iwd~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~l~s~~ 320 (430)
+.|.+.|.++++.+..+... .....+.|+|+|+++.|+..+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999998877632 123568999999876665555
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00026 Score=62.21 Aligned_cols=195 Identities=9% Similarity=-0.055 Sum_probs=117.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--cE
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i 239 (430)
......++++++++++++-..++.|..||.... ....+... ..+..+++ .++++++++..... .|
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~----------~~p~gia~--~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVE----------GKVSGLAF--TSNGDLVATGWNADSIPV 97 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECS----------SEEEEEEE--CTTSCEEEEEECTTSCEE
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC----------CCceeEEE--cCCCcEEEEeccCCcceE
Confidence 356778999999887776667889999998753 22222211 35788888 78888666554332 47
Q ss_pred EEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-Eeeee-------C-CCCCCeEEEEe
Q 014154 240 RLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFI-------G-KCSGSIRSIAR 309 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-------~-~~~~~v~~i~~ 309 (430)
..+|..+++. ...... .......++..+++..+++-..++.|+++|..+++. +.... . ..-...+.+
T Consensus 98 ~~~d~~~g~~-~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 98 VSLVKSDGTV-ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEECTTSCE-EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEcCCCCeE-EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 7777776542 222221 122334555555554444444688999999876532 21110 0 001234556
Q ss_pred cCCCCeEEEE-eCCCcEEEEECCC-Cce--eeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154 310 HPTLPIIASC-GLDSYLRFWDIKT-RQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 310 ~~~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+|++.+|+.+ ...+.|.+|++.. ++. ...+ ... .....++++++|.+ ++....+.|.+++...
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EES---CCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-ecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 7888766554 5678899999874 332 1111 111 12367888999988 6666678899998653
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.33 E-value=0.0001 Score=72.40 Aligned_cols=190 Identities=11% Similarity=-0.042 Sum_probs=101.0
Q ss_pred EEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---
Q 014154 166 AFSKVDISEKFSLFGG-KG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--- 236 (430)
Q Consensus 166 ~~~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--- 236 (430)
.+++..+++++++.|+ .+ ..+.+||..+..-... .......... ... ...+ ..++..++.++.+
T Consensus 290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~--~~~--~~~~--~~~~~iyv~Gg~~g~~ 362 (656)
T 1k3i_A 290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLT--ADK--QGLY--RSDNHAWLFGWKKGSV 362 (656)
T ss_dssp CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCC--CCT--TGGG--TTTCSCCEEECGGGCE
T ss_pred cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCcccccccc--ccc--ccee--ecCCceEEEECCCCcE
Confidence 3456667899999988 34 5699999987653221 1100000000 000 0011 2344444555444
Q ss_pred ------CcEEEEECCCCCcceEEEeecC---------CCeEEEEec-CCCCEEEEEeCCC-----------cEEEEEccC
Q 014154 237 ------HQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAEE-PDSFNIYIGNGSG-----------DLASVDIRT 289 (430)
Q Consensus 237 ------g~i~iwd~~~~~~~~~~~~~~~---------~~i~~~~~s-p~~~~l~~~~~d~-----------~i~iwd~~~ 289 (430)
..+..||..+... ......+. ..-.++.|. .++++++.|+.++ .|.+||..+
T Consensus 363 ~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~ 441 (656)
T 1k3i_A 363 FQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT 441 (656)
T ss_dssp EECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS
T ss_pred EEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCC
Confidence 3567888876442 22222111 122444443 3677778877532 688889887
Q ss_pred CeEEeee--eCCCCCC-eEEEEecCCCCeEEEEeCC-----------CcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154 290 GKLLGCF--IGKCSGS-IRSIARHPTLPIIASCGLD-----------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA 355 (430)
Q Consensus 290 ~~~~~~~--~~~~~~~-v~~i~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s 355 (430)
.+-.... ... ... -.+++..|++++++.|+.+ ..+.+||..+.+-...-.+... ........+.
T Consensus 442 ~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~-R~~hs~a~ll 519 (656)
T 1k3i_A 442 SPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLL 519 (656)
T ss_dssp CCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC-CCTTEEEEEC
T ss_pred CCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc-cccccHhhcC
Confidence 6654332 112 222 2345667899999999854 4689999987654321111111 1111234456
Q ss_pred ccccc-cccCC
Q 014154 356 DKEVA-NAAAD 365 (430)
Q Consensus 356 ~~g~~-~~~~~ 365 (430)
|+|++ ++|+.
T Consensus 520 ~dg~v~v~GG~ 530 (656)
T 1k3i_A 520 PDGRVFNGGGG 530 (656)
T ss_dssp TTSCEEEEECC
T ss_pred CCcEEEecCCC
Confidence 89988 66664
No 267
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.30 E-value=0.00018 Score=63.23 Aligned_cols=188 Identities=9% Similarity=0.100 Sum_probs=120.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee--cCCCC---EEEEEeC---CCcEEEEEC
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHR---KFVAGTN---DHQVRLYDT 244 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~---~l~s~~~---dg~i~iwd~ 244 (430)
...+++.....+-+.+||+ +++.+..+.. ..++.+...+ .-.+. ++++... +++|.+|++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-----------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-----------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-----------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-----------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 4456666667788999999 8888887754 2245544421 00222 2233333 578999977
Q ss_pred CCCCcceEEEee------cC-CCeEEEEe--cCC-CC-EEEEEeCCCcEEEEEcc-------CCeEEeeeeCCCCCCeEE
Q 014154 245 SAQRRPVMSFDF------RE-TPIKAVAE--EPD-SF-NIYIGNGSGDLASVDIR-------TGKLLGCFIGKCSGSIRS 306 (430)
Q Consensus 245 ~~~~~~~~~~~~------~~-~~i~~~~~--sp~-~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~ 306 (430)
.....++..+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+++|.. .+.+..
T Consensus 107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Eg 184 (355)
T 3amr_A 107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEG 184 (355)
T ss_dssp CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEE
T ss_pred CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcce
Confidence 422223444421 11 45666777 774 43 68888899999999883 4466778876 467889
Q ss_pred EEecCCCCeEEEEeCCCcEEEEECC-----CCceeeEEEeeccccceEEeeec--ccccc-c--cccCCCCceEecCCC
Q 014154 307 IARHPTLPIIASCGLDSYLRFWDIK-----TRQLLSAVFLKQHLNEVVFDSAF--ADKEV-A--NAAADAPMLEIQNGN 375 (430)
Q Consensus 307 i~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~v~~~~~--s~~g~-~--~~~~~d~~i~~~~~~ 375 (430)
+...+....|+.+-+|.-|..++.+ +++.+..+. .++...-+..|+. .++++ + ++.-.++.+.+|+..
T Consensus 185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999988899999998777777754 344554421 2333333566666 56666 4 333357789999886
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.25 E-value=0.0025 Score=57.90 Aligned_cols=233 Identities=8% Similarity=-0.038 Sum_probs=129.4
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 146 (430)
+|+.+. ...|+..++........+.. .....++.+-.... ..+++-...+.+..+++...
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~~~~-------~ly~~D~~~~~I~r~~~~g~--- 148 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRRE-------LVFWSDVTLDRILRANLNGS--- 148 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSC---
T ss_pred eeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEecCCC-------eEEEEeCCCCcEEEEecCCC---
Confidence 444443 36688888765443322221 12444455443332 23344445555555543211
Q ss_pred ccCCCcceEEeeecCCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
.+..+-.........+++++.+..|+. -...+.|.+++++.......+... ......+++ .|
T Consensus 149 ------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~---------l~~P~giav--dp 211 (386)
T 3v65_B 149 ------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------LEKPRAIAL--HP 211 (386)
T ss_dssp ------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS---------CSCEEEEEE--ET
T ss_pred ------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC---------CCCCcEEEE--Ec
Confidence 122221122234567888875555544 445678888888644322222211 144678888 66
Q ss_pred CCCEEEEEe-CC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCC
Q 014154 226 DHRKFVAGT-ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 226 ~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 302 (430)
.+..|+.+. .. +.|..+++..... .......-.....|+++|++..|+.+. ..+.|..+|+........+... ..
T Consensus 212 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~ 289 (386)
T 3v65_B 212 MEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LP 289 (386)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CS
T ss_pred CCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CC
Confidence 555554443 44 6788888875332 222222334578999998776666654 4578999998643332233322 34
Q ss_pred CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
....|++ ..+.++++-...+.|..++..+|+.+..+
T Consensus 290 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 290 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 5678888 34445556667788999997778777764
No 269
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.25 E-value=0.0015 Score=55.11 Aligned_cols=171 Identities=10% Similarity=0.054 Sum_probs=102.9
Q ss_pred ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154 153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK 229 (430)
Q Consensus 153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 229 (430)
.++.+.+........+++.+++.++++.-.++.+.++++.....+ ....... ...........++| +|.++.
T Consensus 60 v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~---~~~~~N~g~EGLA~--d~~~~~ 134 (255)
T 3qqz_A 60 LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL---QESPTNCGFEGLAY--SRQDHT 134 (255)
T ss_dssp EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC---SSCCCSSCCEEEEE--ETTTTE
T ss_pred EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc---ccccccCCcceEEE--eCCCCE
Confidence 444444443457788999888877676656788999988654321 2221100 01112244789999 788877
Q ss_pred EEEEeCCCcEEEEECCC--CCcceEEEee-------cCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154 230 FVAGTNDHQVRLYDTSA--QRRPVMSFDF-------RETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGKLLGCFIGK 299 (430)
Q Consensus 230 l~s~~~dg~i~iwd~~~--~~~~~~~~~~-------~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 299 (430)
|+++.......+|.+.. ....+..+.. +...+.+++++|... +++.+.....|.++|.. ++.+..+.-.
T Consensus 135 L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~ 213 (255)
T 3qqz_A 135 FWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT 213 (255)
T ss_dssp EEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS
T ss_pred EEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC
Confidence 77776655555555431 1111222211 223578999999654 55555667888899974 6665555432
Q ss_pred C--------CCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154 300 C--------SGSIRSIARHPTLPIIASCGLDSYLRFWDI 330 (430)
Q Consensus 300 ~--------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~ 330 (430)
. -.....|+|.++|++. ..++-+.+++|.-
T Consensus 214 ~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 214 KGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp TTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred CccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence 0 1266899999999744 4477777777754
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.24 E-value=0.00035 Score=64.61 Aligned_cols=198 Identities=15% Similarity=0.036 Sum_probs=117.2
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---C-
Q 014154 164 TIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H- 237 (430)
Q Consensus 164 ~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g- 237 (430)
....++++|+ ...|+.+...+.|+.+|+.++........ ......+++ +++++++++.... .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~----------~~~P~giav--d~dG~lyVad~~~~~~~~ 207 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN----------IGQCADVNF--TLNGDMVVVDDQSSDTNT 207 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC----------CSCEEEEEE--CTTCCEEEEECCSCTTSE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC----------CCCccEEEE--CCCCCEEEEcCCCCcccc
Confidence 4568899984 55666665558999999987766544331 145788999 8899854443321 1
Q ss_pred cEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCe
Q 014154 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPI 315 (430)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~ 315 (430)
.+..++..........+. .......++++| ++.++++-..++.|+.+|..++.....+ .......-..++|+|++.+
T Consensus 208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 233333332211111222 224456788999 6655555556788999999877763222 2211223357999999985
Q ss_pred EEEE-eCCCcEEEEECC--CCceeeEEEeecc---------------ccceEEeeec---------cccccc-cccCCCC
Q 014154 316 IASC-GLDSYLRFWDIK--TRQLLSAVFLKQH---------------LNEVVFDSAF---------ADKEVA-NAAADAP 367 (430)
Q Consensus 316 l~s~-~~dg~i~iwd~~--~~~~~~~~~~~~~---------------~~~~v~~~~~---------s~~g~~-~~~~~d~ 367 (430)
|+.+ ...+.|+.+++. ++.......+.+. ... ...+++ .++|.+ ++-...+
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~-P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWG-PNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSS-EEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcC-CccEEEEccccccccCCCCcEEEEECCCC
Confidence 5544 456789998865 3322110001111 111 356888 777777 6666677
Q ss_pred ceEecCCC
Q 014154 368 MLEIQNGN 375 (430)
Q Consensus 368 ~i~~~~~~ 375 (430)
.|+.++.+
T Consensus 366 ~I~~~~~~ 373 (433)
T 4hw6_A 366 TVRVLTPE 373 (433)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 88888743
No 271
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.20 E-value=0.0046 Score=64.21 Aligned_cols=230 Identities=10% Similarity=0.007 Sum_probs=132.8
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC---------------------
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--------------------- 183 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------- 183 (430)
-++. ..++.++|..+... ....++.+.-+..+..++++|..+.++.+..+
T Consensus 708 g~v~-~~~~~LrI~~i~~~--------~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1158)
T 3ei3_A 708 SLAL-ANNSTLTIGTIDEI--------QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA 778 (1158)
T ss_dssp EEEE-ECSSCEEEEEECCS--------SSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHC
T ss_pred cEEE-EcCCceEEEEeccc--------CCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhh
Confidence 3443 33456888887422 24455555566778888888877765544321
Q ss_pred ----------------------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-c-CCCCEEEEE
Q 014154 184 ----------------------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-I-DDHRKFVAG 233 (430)
Q Consensus 184 ----------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~s~ 233 (430)
+.|++.|..+.+.+..+.-.. ...+.+++... . ....+|++|
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~--------nE~~~sv~~v~~~~~~~~~lvVG 850 (1158)
T 3ei3_A 779 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ--------NEYALSLVSCKLGKDPNTYFIVG 850 (1158)
T ss_dssp SEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT--------TEEEEEEEEECCTTCCCCEEEEE
T ss_pred hhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC--------CcceEEEEEEEEccCCCEEEEEE
Confidence 135555555554443333221 13344444321 2 224688888
Q ss_pred e----------CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154 234 T----------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS 303 (430)
Q Consensus 234 ~----------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 303 (430)
+ ..|.|++|++...+..+..-....+++++++-- +| +|++|- ...|++|++...+.+..-..+ -..
T Consensus 851 Ta~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~-~~~ 926 (1158)
T 3ei3_A 851 TAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNH-YNN 926 (1158)
T ss_dssp EEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEE-CCC
T ss_pred eeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeec-ccc
Confidence 6 357899999874321111122235788888743 35 555553 578999999866543311111 112
Q ss_pred eEEEEecCCCCeEEEEeCCCcEEEEEC--CCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 304 IRSIARHPTLPIIASCGLDSYLRFWDI--KTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 304 v~~i~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
|..+.....+.+++.|..-..|.++.. ..+++... -+......++++.|-.++.++.+..+|.+.++..++.
T Consensus 927 i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~--a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 927 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI--ARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp SCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE--EECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred EEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE--EeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 333333335778888887777776554 33333332 2233355578888887777788999999999988763
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.19 E-value=0.0026 Score=56.91 Aligned_cols=197 Identities=8% Similarity=-0.028 Sum_probs=119.8
Q ss_pred CCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcE
Q 014154 162 SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i 239 (430)
...+..++|++....|+... ..+.|..+++........+.... .....+++ .+ .+.++++-...+.|
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------~~p~glav--d~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------ESPGGLAV--DWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCEEEE--ETTTTEEEEEETTTTEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC---------CCccEEEE--ecCCCeEEEEcCCCCeE
Confidence 34578899998776666554 56789999987654332222111 33567788 55 44555665667899
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CC-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
.+.++..... ...+...-.....++++|.+..|+... .. +.|..+++.... ...+....-.....|+|+|++..|+
T Consensus 141 ~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 141 EVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp EEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEE
T ss_pred EEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEE
Confidence 9999886332 233333335678999999766665554 44 778888875433 2233221144678999998776665
Q ss_pred EE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154 318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 318 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
.+ ...+.|..+|+.... ...+ +...... ...+++..+.-+++-...+.|..++.
T Consensus 219 ~aD~~~~~I~~~~~dG~~-~~~~-~~~~~~~-P~giav~~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 219 WVDAKHHVIERANLDGSH-RKAV-ISQGLPH-PFAITVFEDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp EEETTTTEEEEEETTSCS-CEEE-ECSSCSS-EEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEECCCCEEEEEeCCCCc-eEEE-EeCCCCC-ceEEEEECCEEEEecCCCCeEEEEEc
Confidence 55 456789999986433 2222 2222222 36677743333366666777777763
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.14 E-value=0.0045 Score=56.27 Aligned_cols=197 Identities=7% Similarity=-0.071 Sum_probs=120.7
Q ss_pred CCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcE
Q 014154 162 SGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQV 239 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i 239 (430)
...+..++|++.+..|+.. ...+.|..+++........+.... .....+++ .+ .+.++++-...+.|
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------~~p~glav--d~~~g~lY~~d~~~~~I 183 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------ESPGGLAV--DWVHDKLYWTDSGTSRI 183 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC---------SCCCCEEE--ETTTTEEEEEETTTTEE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC---------CCccEEEE--EeCCCeEEEEcCCCCeE
Confidence 3567889999866666655 456789999987654333222211 23456777 55 44555555667789
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
.+.++..... ...+...-.....++++|.+.+|+.... . +.|..+++............ -.....|+|+|++..|+
T Consensus 184 ~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 184 EVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEE
T ss_pred EEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEE
Confidence 9998875332 3333333356789999997776665543 3 67888887543332222222 34678999998776665
Q ss_pred EE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154 318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 318 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
.+ +..+.|..+|+.... ...+ +...... ...+++..+.-+++....+.|..++.
T Consensus 262 ~aD~~~~~I~~~d~dG~~-~~~~-~~~~~~~-P~giav~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 262 WVDAKHHVIERANLDGSH-RKAV-ISQGLPH-PFAITVFEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEETTTTEEEEECTTSCS-CEEE-ECSSCSS-EEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEECCCCEEEEEeCCCCe-eEEE-EECCCCC-ceEEEEECCEEEEeeCCCCeEEEEEC
Confidence 55 456789999986433 2322 2222222 36777744333466667778877764
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.00032 Score=64.80 Aligned_cols=155 Identities=10% Similarity=0.059 Sum_probs=99.8
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC----
Q 014154 164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH---- 237 (430)
Q Consensus 164 ~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg---- 237 (430)
....++++| ++..|+++...+.|+.+|+..+........ ......++| ++++++|+++.. ++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------~~~P~~ia~--d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------LSKVRTICW--THEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------CSCEEEEEE--CTTSSEEEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcceEEE--eCCCCEEEEEeCCCCcccc
Confidence 457889998 466777776668899999987655443331 145788999 889986666554 22
Q ss_pred cEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154 238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 316 (430)
.+.+++..........+.. ......++++| ++.++++-..++.|..|+...+................++|+|++++|
T Consensus 206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 3444444322211123322 23457888999 666666666778999999987765322222113457899999999955
Q ss_pred EE-EeCCCcEEEEECC
Q 014154 317 AS-CGLDSYLRFWDIK 331 (430)
Q Consensus 317 ~s-~~~dg~i~iwd~~ 331 (430)
+. -...+.|..++..
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 44 4567889998765
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.0042 Score=54.74 Aligned_cols=198 Identities=9% Similarity=-0.034 Sum_probs=118.9
Q ss_pred CCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeC
Q 014154 162 SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN 235 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~ 235 (430)
......++|++.++.|+.+. ..+.|..+++.. ......+... ......+++ .+ ++.+.++-..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~---------~~~p~glav--d~~~~~ly~~d~~ 97 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQAPDGLAV--DWIHSNIYWTDSV 97 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS---------CSCCCEEEE--ETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC---------CCCcCEEEE--eecCCeEEEEECC
Confidence 45678899998776666554 568899999875 1211112111 033567787 54 4445555567
Q ss_pred CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC--CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
.+.|.++++.... ....+.........++++|.+..|+..... +.|..+++. +.....+....-.....++++|++
T Consensus 98 ~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 98 LGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp TTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTT
T ss_pred CCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccC
Confidence 8899999987532 222333333567899999977666655543 688888874 333333322114567899999987
Q ss_pred CeEEEEe-CCCcEEEEECCCCceeeEEEee-ccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 314 PIIASCG-LDSYLRFWDIKTRQLLSAVFLK-QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 314 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
..|+.+. ..+.|..+|+.. .....+... ..... ...+++.. +.+ ++-...+.|..++..
T Consensus 176 ~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~-P~giav~~-~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAH-PFSLAVFE-DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp TEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSS-EEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEeecCCccCC-cEEEEEEC-CEEEEEECCCCeEEEEeCC
Confidence 7666554 567899999874 333333111 11122 35667754 444 666667788877753
No 276
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.09 E-value=0.0039 Score=53.84 Aligned_cols=236 Identities=13% Similarity=0.080 Sum_probs=140.3
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|..+.||.-. ..+++|+|+++...+..+... .. +.+|..-. ...+.--.+..+.-|++.
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~~~---------e~---VvfWkWis-------~~~L~lVT~taVyHWs~~ 134 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DD---VTFWKWIS-------LNTVALVTDNAVYHWSME 134 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SC---EEEEEECS-------SSEEEEEESSEEEEEESS
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhcceecC---------Cc---cEEEEecC-------CCeEEEEcCCcEEEEccc
Confidence 66667777754 588999999988777776541 23 44555433 344445556779999875
Q ss_pred ecCccccCCCcceEEeeecC---CCceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK-------GVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 211 (430)
. ...++++++... +..|.....+++.++++..+- .|.+.+|..+... ...+.+|..
T Consensus 135 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa------ 200 (365)
T 2xzh_A 135 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA------ 200 (365)
T ss_dssp T-------TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEE------
T ss_pred C-------CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeee------
Confidence 3 234788887432 356777788888888775442 3678899987643 233444421
Q ss_pred CCcceeEEEEeecCC-CCEEEEEeC---CCcEEEEECCCC---C-----cceEEEeec---CCCeEEEEecCCCCEEEEE
Q 014154 212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ---R-----RPVMSFDFR---ETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~-~~~l~s~~~---dg~i~iwd~~~~---~-----~~~~~~~~~---~~~i~~~~~sp~~~~l~~~ 276 (430)
....+.+.-.+. ..+++.+.. .+.++|-++... . +.+..+-.. ..---++..|+.-..++.-
T Consensus 201 ---~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 201 ---SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp ---EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred ---eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 111111100011 112222222 258899988543 1 111111111 2334577788888899999
Q ss_pred eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
+.-|.|++||+.++.++..-+-. ...|...+-+....-++.....|.|.-..++....
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS-~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred eCCcEEEEEEcccCcEEEEeccC-CCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 99999999999999998776654 55665555444433444555666666555554443
No 277
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.08 E-value=0.016 Score=60.30 Aligned_cols=325 Identities=8% Similarity=0.005 Sum_probs=162.1
Q ss_pred CCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeec--CCCCCceeEEeec-CCeEEEecCCCCcc
Q 014154 11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID--DSQNDPLLAVARK-NGLTDILNPLNGDL 87 (430)
Q Consensus 11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~g~~l~~g~~-dg~i~iwd~~~~~~ 87 (430)
.|....++.+. ++.+.++++..+ .+ ....... -...+.++++... +...++++|+|.. |++|+|+++.+.+.
T Consensus 520 s~n~~~vvva~-g~~l~~fel~~~--~L-~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~ 594 (1158)
T 3ei3_A 520 SCNSSQVVVAV-GRALYYLQIHPQ--EL-RQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL 594 (1158)
T ss_dssp EECSSEEEEEE-TTEEEEEEEETT--EE-EEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred EeCCCEEEEEE-CCEEEEEEeeCC--ce-eeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence 34333444443 577888887753 11 1111211 2345666665541 1223578999996 99999999976544
Q ss_pred cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154 88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
+..... +......++.+...... ..+..+..+|.+..+.+.... +.- ...+...+. ..++.-
T Consensus 595 ~~~~~L-------~~~~~p~si~l~~~~~~------~~L~igl~dG~l~~~~~d~~t---g~l-~d~r~~~LG-~~pv~L 656 (1158)
T 3ei3_A 595 LHKEML-------GGEIIPRSILMTTFESS------HYLLCALGDGALFYFGLNIET---GLL-SDRKKVTLG-TQPTVL 656 (1158)
T ss_dssp EEEEEC-------CSSCCEEEEEEEEETTE------EEEEEEETTSEEEEEEECTTT---CCE-EEEEEEECC-SSCCEE
T ss_pred EEEEEC-------CCCCCCcEEEEEEeCCC------cEEEEEeCCCeEEEEEEcCCC---Ccc-ccceeEEcC-CCceEE
Confidence 432221 01112333444333221 367888888887766654211 000 011111122 233333
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCccee-EEEEeecCC-CCEEEEEeCCCcEEEEEC
Q 014154 168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFT-SAAFLSIDD-HRKFVAGTNDHQVRLYDT 244 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~-~~~~~~~~~-~~~l~s~~~dg~i~iwd~ 244 (430)
..+...+..-+.+..+....+|.-+ ++.... +.. ..+. ...|. +.. ..-++.. .++.++|..+
T Consensus 657 ~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~-----------~~v~~~~~F~-se~~~~g~v~~-~~~~LrI~~i 722 (1158)
T 3ei3_A 657 RTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNL-----------KEVNYMCPLN-SDGYPDSLALA-NNSTLTIGTI 722 (1158)
T ss_dssp EEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSS-----------SCCCEEEEEC-CSSSTTEEEEE-CSSCEEEEEE
T ss_pred EEEeeCCceeEEEECCCCEEEEEcC-CceEEeccCh-----------HHhceEeccC-cccCCCcEEEE-cCCceEEEEe
Confidence 3333333333333444455555433 222211 111 1122 22342 221 2334433 3556888877
Q ss_pred CCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCC--------------------------------------------
Q 014154 245 SAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS-------------------------------------------- 279 (430)
Q Consensus 245 ~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-------------------------------------------- 279 (430)
..... .++.+.. ...+..++++|..+.++++..+
T Consensus 723 ~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 801 (1158)
T 3ei3_A 723 DEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG 801 (1158)
T ss_dssp CCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred cccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence 54322 2334443 3567888888877665544311
Q ss_pred -----CcEEEEEccCCeEEeeeeCCCCCCeEEEE---ecCC-CCeEEEEe----------CCCcEEEEECCCCceeeEEE
Q 014154 280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIA---RHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSAVF 340 (430)
Q Consensus 280 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~---~~~~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~ 340 (430)
+.|++.|..+.+.+..+.-.....+.+++ |..+ ..+|+.|. ..|.|++|++..+++...
T Consensus 802 ~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv-- 879 (1158)
T 3ei3_A 802 EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV-- 879 (1158)
T ss_dssp CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE--
T ss_pred CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE--
Confidence 23677787777776665533234455554 3322 46888875 347899999975443322
Q ss_pred eeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 341 LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 341 ~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
......+.+++++-- +|++++ +-...+++|++...
T Consensus 880 ~~~~v~g~v~al~~~-~g~Lla-~ig~~l~vy~l~~~ 914 (1158)
T 3ei3_A 880 AEKEVKGAVYSMVEF-NGKLLA-SINSTVRLYEWTTE 914 (1158)
T ss_dssp EEEEESSCEEEEEEE-TTEEEE-EETTEEEEEEECTT
T ss_pred EEEEcCCcCEEEeee-CCEEEE-EcCCEEEEEECCCC
Confidence 222234445665532 355433 34578999988653
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.05 E-value=0.007 Score=55.26 Aligned_cols=200 Identities=9% Similarity=-0.024 Sum_probs=121.7
Q ss_pred CCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe----eeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEe
Q 014154 161 ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT 234 (430)
Q Consensus 161 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~ 234 (430)
....+..++|++.+..|+... ..+.|+.+++.... ....+... ......+++ .+ .+.+.++-.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---------~~~p~glav--D~~~~~lY~~d~ 178 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQAPDGLAV--DWIHSNIYWTDS 178 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS---------CSCEEEEEE--ETTTTEEEEEET
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---------CCCcccEEE--EecCCceEEEEC
Confidence 346788999998777776654 46788888886521 11112111 134677888 55 455566666
Q ss_pred CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT 312 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~ 312 (430)
..+.|.+.++..... ...+.........|++.|.+.+|+.... .+.|...++........+... -.....|+++++
T Consensus 179 ~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glavd~~ 256 (400)
T 3p5b_L 179 VLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLL 256 (400)
T ss_dssp TTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-CSCEEEEEEETT
T ss_pred CCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-CCceEEEEEEeC
Confidence 778999999986432 3333333346789999997767766553 378888888543332222332 357899999988
Q ss_pred CCeEEEEe-CCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 313 LPIIASCG-LDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 313 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
+..|+.+. ..+.|..+|+.... ...+.. .+.... ..++++..+.-+.+....+.|..++..
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~-P~gl~v~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 257 SGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp TTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSS-EEEEEEETTEEEEEESSSCSEEEEESS
T ss_pred CCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCC-CEEEEEeCCEEEEecCCCCeEEEEEcC
Confidence 77776664 56789999986433 333211 112222 356666444344666666777777643
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.04 E-value=0.0064 Score=54.36 Aligned_cols=162 Identities=6% Similarity=-0.114 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCC-CcE
Q 014154 163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTND-HQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d-g~i 239 (430)
.....+++++.+..|+ +-...+.|.+.+++.......+... ......+++ .|.+. ++++-... +.|
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~---------l~~P~~iav--dp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------LEKPRAIAL--HPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT---------CSCEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC---------CCCcceEEE--ecCcCeEEEeccCCCCEE
Confidence 3456789987555554 4455678999998754332222211 144678888 66444 44444444 788
Q ss_pred EEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154 240 RLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
..+++.... ...+ ...-.....|+++|++..|+.+. ..+.|..+|+........+... ......+++. .+.+++
T Consensus 185 ~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~-~~~ly~ 260 (349)
T 3v64_C 185 EASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVF-EDSLYW 260 (349)
T ss_dssp EEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEE-TTEEEE
T ss_pred EEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEEE-CCEEEE
Confidence 888887532 2222 22234578999998777666654 4578999998643322223332 3456778883 444555
Q ss_pred EEeCCCcEEEEECCCCceeeEE
Q 014154 318 SCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
+-...+.|..++..+|+.+..+
T Consensus 261 td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EETTTTEEEEEETTTCCSCEEE
T ss_pred ecCCCCeEEEEEccCCCccEEe
Confidence 5556788988887777776664
No 280
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.02 E-value=0.0061 Score=53.37 Aligned_cols=234 Identities=9% Similarity=-0.042 Sum_probs=120.8
Q ss_pred eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-CC
Q 014154 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KG 133 (430)
Q Consensus 55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g 133 (430)
..+.+ .|+|+++++-..++.|..||... .....+.. .....++.+-+. +.++.+.. .+
T Consensus 35 egia~--~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---------~~~p~gia~~~d---------G~l~vad~~~~ 93 (306)
T 2p4o_A 35 ENLAS--APDGTIFVTNHEVGEIVSITPDG-NQQIHATV---------EGKVSGLAFTSN---------GDLVATGWNAD 93 (306)
T ss_dssp EEEEE--CTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---------SSEEEEEEECTT---------SCEEEEEECTT
T ss_pred ceEEE--CCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---------CCCceeEEEcCC---------CcEEEEeccCC
Confidence 34455 56777666666789999999753 33222211 123444444322 23443332 22
Q ss_pred eeEEEEeeecCccccCCCcceE-EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCc
Q 014154 134 KASMRSIEVTKVSAESSCSTVK-SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIF 211 (430)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~~~i~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~ 211 (430)
...|+.+.. .++.+. +...........++..+.+..+++-..++.|+++|...+. .+..............
T Consensus 94 ~~~v~~~d~-------~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 94 SIPVVSLVK-------SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp SCEEEEEEC-------TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred cceEEEEcC-------CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 333443321 112332 2222222233445555544444444458899999987653 2221111000000000
Q ss_pred CCcceeEEEEeecCCCCEE-EEEeCCCcEEEEECCC-CCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 212 TPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSA-QRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
.....+.+ ++++..| ++-...+.|..|++.. +.. ....+.. ......++++++|+++++....+.|.++|..
T Consensus 167 ~~~~pngi----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 167 VFPAANGL----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp CSCSEEEE----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCCcCCCc----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 00223344 3466555 4445678899999874 221 1122221 1345678999999877766677899999975
Q ss_pred CCeEEe--eeeCCCCCCeEEEEec---CCCCeEEEEeCCC
Q 014154 289 TGKLLG--CFIGKCSGSIRSIARH---PTLPIIASCGLDS 323 (430)
Q Consensus 289 ~~~~~~--~~~~~~~~~v~~i~~~---~~~~~l~s~~~dg 323 (430)
++... .+... ....++++|. |++..|+.++..+
T Consensus 242 -G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 242 -RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCCC
Confidence 65532 33322 3568999998 8887776665543
No 281
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.01 E-value=0.0054 Score=53.90 Aligned_cols=204 Identities=12% Similarity=0.152 Sum_probs=120.4
Q ss_pred CCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce-EEEEcc--CCeeEEEE
Q 014154 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTT--KGKASMRS 139 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~--~g~~~v~~ 139 (430)
|...+++.....+-+.+||+ +|+.+..+.. ..+..+.+-+.-... +..... +++.-. .+++.++.
T Consensus 38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l~-g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPLN-GKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGGCEEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEET-TEEEEEEEEEECSTTCCEEEEEE
T ss_pred CCccEEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEecccccC-CceEeEEEEeCCCCCCCeEEEEE
Confidence 34455666667789999999 8988887653 234444333211000 000012 222333 46788888
Q ss_pred eeecCccccCCCcceEEee-----ecCC-CceEEEEE--cCC-CC-EEEEEeCCCeEEEEECC-------CCeeeEeeCC
Q 014154 140 IEVTKVSAESSCSTVKSWN-----VCAS-GTIAFSKV--DIS-EK-FSLFGGKGVEVNVWDLD-------KCEKIWTAKP 202 (430)
Q Consensus 140 ~~~~~~~~~~~~~~i~~~~-----~~~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~ 202 (430)
+.-.. +.+...- +... ..+..+++ +|. +. ++++...+|.+..|++. +.+.++++..
T Consensus 106 iDp~~-------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 106 IDGKN-------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp ECTTT-------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred ECCCC-------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence 74221 1222221 0122 45666777 674 43 68888889999999883 2345555554
Q ss_pred CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----CcceEEEe-ec-CCCeEEEEe--cCCCC-EE
Q 014154 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----RRPVMSFD-FR-ETPIKAVAE--EPDSF-NI 273 (430)
Q Consensus 203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~-~~-~~~i~~~~~--sp~~~-~l 273 (430)
. ..+..+.. .+....|+.+-++.-|..|+.... ...+..+. ++ ...+..|++ .++++ +|
T Consensus 179 g----------sq~Egcvv--Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 179 N----------SQTEGMAA--DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp S----------SCEEEEEE--ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred C----------CCcceEEE--cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 3 45777777 677788999999877777775421 11233332 11 246788887 45555 67
Q ss_pred EEEe-CCCcEEEEEcc-CCeEEeeee
Q 014154 274 YIGN-GSGDLASVDIR-TGKLLGCFI 297 (430)
Q Consensus 274 ~~~~-~d~~i~iwd~~-~~~~~~~~~ 297 (430)
++++ .++...+||.. +.+.+..|.
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 7766 56799999996 666666665
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.99 E-value=0.0072 Score=53.22 Aligned_cols=197 Identities=9% Similarity=-0.020 Sum_probs=120.2
Q ss_pred CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcE
Q 014154 163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i 239 (430)
.....++|++.+..|+.. ...+.|..+++...... ..+... ......+++ .+ .+.++++-...+.|
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---------l~~p~glav--d~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---------LLSPDGLAC--DWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC---------CSCCCEEEE--ETTTTEEEEEETTTTEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC---------CCCccEEEE--EcCCCeEEEEECCCCEE
Confidence 356688898866666554 45678888988765211 111110 023567777 54 45555665667899
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPII 316 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l 316 (430)
.++++..... ...+.........+++.|.+.+|+.... .+.|..+++.. .....+ ... -...+.|+|+|++..|
T Consensus 104 ~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~-l~~Pnglavd~~~~~l 180 (318)
T 3sov_A 104 EVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE-IYWPNGLTLDYEEQKL 180 (318)
T ss_dssp EEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSS-CSCEEEEEEETTTTEE
T ss_pred EEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECC-CCCccEEEEeccCCEE
Confidence 9999875332 2233233456789999997767766653 57888888753 322233 222 3467899999977666
Q ss_pred EEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 317 ASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 317 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
+.+ +..+.|..+|+.. .....+ ..+.... ...+++..++-+.+-...+.|..++...
T Consensus 181 Y~aD~~~~~I~~~d~dG-~~~~~~-~~~~~~~-P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDG-TNRQAV-VKGSLPH-PFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp EEEETTTTEEEEEETTS-CSCEEE-ECSCCSC-EEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCEEEEEcCCC-CceEEE-ecCCCCC-ceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 555 4567899999864 333332 2222222 3667776554456666677888777643
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.90 E-value=0.0036 Score=57.76 Aligned_cols=197 Identities=10% Similarity=-0.005 Sum_probs=108.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEe
Q 014154 162 SGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT 234 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~ 234 (430)
......++++++++ |+++...+ .+..++...+... ..+. .......+++ .| ++.+.++-.
T Consensus 181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~----------~~~~P~giav--d~~~G~lyv~d~ 247 (433)
T 4hw6_A 181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC----------NARGAKTCAV--HPQNGKIYYTRY 247 (433)
T ss_dssp CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE----------ECSSBCCCEE--CTTTCCEEECBT
T ss_pred CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc----------ccCCCCEEEE--eCCCCeEEEEEC
Confidence 35688999999999 55454322 1333332211100 0000 0133456777 67 676666666
Q ss_pred CCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc--CCeE--EeeeeCC---------
Q 014154 235 NDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR--TGKL--LGCFIGK--------- 299 (430)
Q Consensus 235 ~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~--~~~~--~~~~~~~--------- 299 (430)
.++.|+.+|..++......+... ...-..++|+|++++|+.+. ..+.|+.+++. ++.. ...+.+.
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg 327 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDG 327 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCC
Confidence 77889999998654211222211 22335799999999665554 56789998865 3321 1122111
Q ss_pred -----CCCCeEEEEe---------cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc------cc---------ceEE
Q 014154 300 -----CSGSIRSIAR---------HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH------LN---------EVVF 350 (430)
Q Consensus 300 -----~~~~v~~i~~---------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~---------~~v~ 350 (430)
.-.....+++ .+++.++++-...+.|+.++. +|... ++.-.+. .. ....
T Consensus 328 ~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~ 405 (433)
T 4hw6_A 328 MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPT 405 (433)
T ss_dssp EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEE
T ss_pred cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCc
Confidence 0123677899 777777777677788999985 55433 3211110 00 1135
Q ss_pred eeecc-ccccc-cccCCCCceEecC
Q 014154 351 DSAFA-DKEVA-NAAADAPMLEIQN 373 (430)
Q Consensus 351 ~~~~s-~~g~~-~~~~~d~~i~~~~ 373 (430)
.++++ ++|.+ ++-.....|+.++
T Consensus 406 giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 406 SIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred EEEEECCCCEEEEEeCCCCEEEEEe
Confidence 67777 56666 5544555666554
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.90 E-value=0.0002 Score=71.38 Aligned_cols=114 Identities=4% Similarity=-0.042 Sum_probs=76.2
Q ss_pred ceeEEEEeec-CCCCEEEEEeC-CC----cEEEEECCCC-CcceEEEeecCCCeEEEEecCCCCEEEEEeCC-----CcE
Q 014154 215 WFTSAAFLSI-DDHRKFVAGTN-DH----QVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDL 282 (430)
Q Consensus 215 ~v~~~~~~~~-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----~~i 282 (430)
.+...+| + |||++|+.+.. +| .|+++|+.++ +.....+.. ....++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~--S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKP--APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEE--CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEe--cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 4667788 9 99998876543 33 4999999987 521111221 13468899999888777665 358
Q ss_pred EEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEe---CCCcEEEEECCCC
Q 014154 283 ASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTR 333 (430)
Q Consensus 283 ~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~ 333 (430)
+++++.+++. ...+..........+.|+|||++|+..+ ....|+++|+.++
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8888877642 2233322134567889999999887665 3346889999875
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.00032 Score=64.89 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=97.9
Q ss_pred ceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C----cEEEEEcc
Q 014154 215 WFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G----DLASVDIR 288 (430)
Q Consensus 215 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~----~i~iwd~~ 288 (430)
....+++ +| ++..|+++...+.|+.+|+.... +..+.........|+|++++++|+++... + .+.+++.
T Consensus 138 ~P~~lav--dp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSF--DPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEE--ETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEE--CCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 4567888 66 34556655555889999998643 34444344568899999999977666542 2 2444443
Q ss_pred CCeEE--eeeeCCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc-c-ccc
Q 014154 289 TGKLL--GCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAA 363 (430)
Q Consensus 289 ~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~ 363 (430)
.+... ..+.. ......++++| ++.++++-..++.|+.|+..++.......... ......++|+|+|+ + ++-
T Consensus 213 ~g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~--~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 213 ESGFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD--SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp GGTSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS--SSCCEEEEECTTSSEEEEEE
T ss_pred CCceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC--CCcceeEEEcCCCCEEEEEE
Confidence 33221 22222 23457788999 67666666677899999998765433221211 22347899999998 4 666
Q ss_pred CCCCceEecCCCC
Q 014154 364 ADAPMLEIQNGND 376 (430)
Q Consensus 364 ~~d~~i~~~~~~~ 376 (430)
...+.|..++.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 6788888887653
No 286
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.84 E-value=0.015 Score=52.29 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=142.7
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|..+.||.-. ..++.|+|+++...+..+... ..+ .+|..-. ...+.--.+..+.-|++.
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~V---vfWkWis-------~~~l~lVT~taVyHWsi~ 133 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDV---TFWKWIS-------LNTVALVTDNAVYHWSME 133 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCC---CEEEEEE-------TTEEEEECSSEEEEEESS
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCc---eEEEecC-------CCeEEEEcCCeeEEeccc
Confidence 56667777754 688999999888777766531 233 3443322 234444556779999975
Q ss_pred ecCccccCCCcceEEeeecC---CCceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK-------GVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 211 (430)
. ...++++|+... +..|.....+++.++++..+- .|.+.+|..+... ...+.+|.
T Consensus 134 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha------- 198 (494)
T 1bpo_A 134 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA------- 198 (494)
T ss_dssp S-------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSE-------
T ss_pred C-------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeee-------
Confidence 3 234888887432 356777888889998875442 4678899987543 23344442
Q ss_pred CCcceeEEEEeecCC-CCEEEEEeC---CCcEEEEECCCC---Ccc--eEEEe--e----cCCCeEEEEecCCCCEEEEE
Q 014154 212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ---RRP--VMSFD--F----RETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~-~~~l~s~~~---dg~i~iwd~~~~---~~~--~~~~~--~----~~~~i~~~~~sp~~~~l~~~ 276 (430)
.....+...-.+. ..+++.+.. .+.++|-++... ..+ ..... . ...--.++..++.-..++.-
T Consensus 199 --a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 199 --ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp --EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred --eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 1111111100001 123333333 268999988643 111 11111 1 12344577888888899999
Q ss_pred eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 335 (430)
+.-|.|++||+.++.+++.-+-. ...|...+-+....-++.....|.|.-..+.....
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred ecCceEEEEecccceeeeeeccc-CCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 99999999999999998776654 55666555555444555555777776666655443
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.77 E-value=0.018 Score=50.69 Aligned_cols=236 Identities=10% Similarity=-0.062 Sum_probs=131.3
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 146 (430)
+|+.+.. ..|+..|+........+.. .....++.+-.... ..+++-...+.+..+++.....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~---------~~~p~g~~~d~~~~-------~ly~~D~~~~~I~~~~~~g~~~- 64 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASN-------RIYWSDLSQRMICSTQLDRAHG- 64 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS---------CSSEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC---------CCceEEEEEEeCCC-------EEEEEECCCCcEEEEECCCCCC-
Confidence 3444443 5688888876654433321 12444555433322 2444445556666666542100
Q ss_pred ccCCCcceEEeeecCCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
+ .....+.. ..-.....+++++.+..|+. -...+.|.+++++.......+... ......+++ .|
T Consensus 65 -~--~~~~~~~~-~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~P~~iav--dp 129 (316)
T 1ijq_A 65 -V--SSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVV--DP 129 (316)
T ss_dssp ------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT---------TCCEEEEEE--ET
T ss_pred -C--cccEEEEe-CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECC---------CCCcceEEe--CC
Confidence 0 00111221 11245678899875555554 456789999998754332222111 134678888 66
Q ss_pred CCCEEEEEeC-C-CcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeee-eC-C
Q 014154 226 DHRKFVAGTN-D-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCF-IG-K 299 (430)
Q Consensus 226 ~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~-~~-~ 299 (430)
.+..|+.+.. . +.|..+++.... ...+ ...-.....|+++|++..|+.+. ..+.|..+|+..... ..+ .. .
T Consensus 130 ~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~ 206 (316)
T 1ijq_A 130 VHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEK 206 (316)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTT
T ss_pred CCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCC
Confidence 5555544443 3 688888886422 2322 22234678999999877776665 457899999864322 222 21 1
Q ss_pred CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 300 ~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
.......+++. .+.++++-...+.|..++..+++.+..+
T Consensus 207 ~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 12346778875 3455555566788999998888776664
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.75 E-value=0.02 Score=56.96 Aligned_cols=198 Identities=10% Similarity=-0.037 Sum_probs=115.1
Q ss_pred CCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCC----eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeC
Q 014154 162 SGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTN 235 (430)
Q Consensus 162 ~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~ 235 (430)
...+..+++++....|+.. ...+.|+.+++... .....+.... .....|++ .+.+ +++++-..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l---------~~P~GLAv--D~~~~~LY~tD~~ 491 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------QAPDGLAV--DWIHSNIYWTDSV 491 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC---------SCCCEEEE--ETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC---------CCcceeee--eecCCcEEEEecC
Confidence 3567789999866666554 44577888888642 1122222111 34567788 5555 45556567
Q ss_pred CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL 313 (430)
Q Consensus 236 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~ 313 (430)
.+.|.+.++..... ...+.........|++.|...+|+.... . +.|...++........+... -.....|++++.+
T Consensus 492 ~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~ 569 (791)
T 3m0c_C 492 LGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLS 569 (791)
T ss_dssp TTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTT
T ss_pred CCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCC
Confidence 78999999986332 2333333456889999998767766653 2 67888888644433333332 4578999999877
Q ss_pred CeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecC
Q 014154 314 PIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN 373 (430)
Q Consensus 314 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~ 373 (430)
..|+.+. ..+.|..+++........+...+.... ..+|++..+.-|++-...+.|...+
T Consensus 570 ~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~-P~glav~~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 570 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS-EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCC-CCEEEEeCCEEEEEECCCCEEEEEe
Confidence 7766664 456799999864433322111112222 2455554332224444555555544
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.72 E-value=0.00027 Score=69.62 Aligned_cols=198 Identities=9% Similarity=-0.015 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCC----eeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC
Q 014154 163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d 236 (430)
..+..++|++.+..|+... ..+.|+.+++... .....+.. . ......+++ .+ .+.++++-...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~------~---~~~P~glav--D~~~g~LY~tD~~~ 474 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------D---IQAPDGLAV--DWIHSNIYWTDSVL 474 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS------C---C--CCCEEC--CCSSSBCEECCTTT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC------C---CCCcceEEE--EeeCCcEEEEeccC
Confidence 3466788988777777654 4578888888641 11111110 0 123456677 43 44555555567
Q ss_pred CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP 314 (430)
Q Consensus 237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 314 (430)
+.|.++++..... ...+.........|+++|.+.+|+.... . +.|..+++.... ...+....-...+.|+|+|++.
T Consensus 475 ~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 475 GTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSG 552 (699)
T ss_dssp SCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTC
T ss_pred CeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCC
Confidence 8899999875331 2222222245678899997666665543 2 678888774322 2222211134567899999765
Q ss_pred eEEEE-eCCCcEEEEECCCCceeeEEE-eeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 315 IIASC-GLDSYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 315 ~l~s~-~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
.|+.+ +..+.|.++++.... ...+. ..+.... ...+++..+.-+++....+.|..++..
T Consensus 553 ~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~-P~glavd~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 553 RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSS-CCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCC-ceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence 55544 566789999986433 22221 1111111 245666555444666667788888754
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.65 E-value=0.0054 Score=53.42 Aligned_cols=162 Identities=12% Similarity=0.110 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEe-eCCCC--CCCCCCcCCcceeEEEEee-cCCCCEEEEEe----
Q 014154 164 TIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWT-AKPPP--KNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT---- 234 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~---- 234 (430)
...+++|++....|+.++ ..++|..|+...+..... +.... .. ....+..+.+.. .|++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~-----~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGD-----GEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSC-----CSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCC-----CcceeeEEEEeccCCCCcEEEEEccccc
Confidence 345788888667777666 689999999975543322 21100 00 012356777710 15666666543
Q ss_pred ---------CCCcEEEEECC---CCCcceEEEee--c----------C-CCeEEEEecCCCCEEEEEeCC-CcEEEEEcc
Q 014154 235 ---------NDHQVRLYDTS---AQRRPVMSFDF--R----------E-TPIKAVAEEPDSFNIYIGNGS-GDLASVDIR 288 (430)
Q Consensus 235 ---------~dg~i~iwd~~---~~~~~~~~~~~--~----------~-~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~ 288 (430)
.+..|..||+. +++. +..... . . .....++..++|+..++++.. +.|..++..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 15779999999 6553 433331 1 1 247889999999999999888 888888875
Q ss_pred CCeEEeeee-----CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 289 TGKLLGCFI-----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 289 ~~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
.... ..+. .......+.|+++|++..|++....|.|..+|+.+
T Consensus 168 G~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3322 2221 11123467999999999888887799999999884
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.64 E-value=0.0023 Score=62.69 Aligned_cols=188 Identities=12% Similarity=0.006 Sum_probs=101.4
Q ss_pred EEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CC-----CcE
Q 014154 167 FSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-----HQV 239 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----g~i 239 (430)
++++..++.++++|+. +..+.+||..+.+-......+. +.+-.+++. .+++++++.|+ .+ ..+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~--------~R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV--------ARGYQSSAT--MSDGRVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS--------CCSSCEEEE--CTTSCEEEECCCCCSSSCCCCE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc--------cccccceEE--ecCCeEEEEeCcccCCcccccc
Confidence 4667788999999884 4589999998764332211111 112233444 46889999988 34 468
Q ss_pred EEEECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEEEeCC---------CcEEEEEccCCeEEeeeeCCC-----
Q 014154 240 RLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKC----- 300 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~----- 300 (430)
.+||+.+.. ...+... ...-....+..++..++.|+.+ ..+..||..+.........+.
T Consensus 317 e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 317 EVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394 (656)
T ss_dssp EEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred eEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence 999998743 2222100 0000001223455555566544 356788888766433222110
Q ss_pred ---CCCeEEEEecC-CCCeEEEEeCCC-----------cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154 301 ---SGSIRSIARHP-TLPIIASCGLDS-----------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA 364 (430)
Q Consensus 301 ---~~~v~~i~~~~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~ 364 (430)
...-.++.|.. ++++++.|+.++ .|.+||..+..-.....-..+....-.+++..|+|++ ++++
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 01224455543 677888887543 6788888776544321001111111134455678888 7777
Q ss_pred CC
Q 014154 365 DA 366 (430)
Q Consensus 365 ~d 366 (430)
.+
T Consensus 475 ~~ 476 (656)
T 1k3i_A 475 QR 476 (656)
T ss_dssp BS
T ss_pred cc
Confidence 54
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.58 E-value=0.019 Score=50.80 Aligned_cols=195 Identities=8% Similarity=-0.058 Sum_probs=104.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
.+..+.+.+++..++.+ .++.|.. ..+.++.-...... ....+..+.+ .+++.+++++...+..+-+|
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~--------~~~~~~~~~~--~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQE--------AIGVMRNLNR--SPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECS--------CCCCEEEEEE--CTTSCEEEEETTSSEEEEEC
T ss_pred CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecC--------CCcceEEEEE--cCCCcEEEEECCCcEEEEeC
Confidence 45667766566555544 4554432 22223221111111 0135778888 67777776654433333444
Q ss_pred CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeEEEEecCCCCeEEEEe
Q 014154 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~ 320 (430)
-. +..-...-......+..+.+.+++..+ +++.+|.+++.+...++--..+... ....+..+.+.+++.+++++
T Consensus 191 ~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g- 267 (327)
T 2xbg_A 191 PG-QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG- 267 (327)
T ss_dssp TT-CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-
T ss_pred CC-CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-
Confidence 31 121111112344678899999988655 4556788877643324332222211 12358899999887766665
Q ss_pred CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154 321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG 374 (430)
Q Consensus 321 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~ 374 (430)
.+|.| ++....|+.-..+.........+.++.|.+++.+++++.+|.|.-++.
T Consensus 268 ~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 268 GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 46766 444554544333211101123357788887777778888898877654
No 293
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.58 E-value=0.031 Score=48.37 Aligned_cols=191 Identities=10% Similarity=0.084 Sum_probs=120.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
+.-++|..+.||.-. ..++.+||+++...+....-. ..|.-=.|. +.+.|+..+ +..|+-|++..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~----------e~VvfWkWi---s~~~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI---SLNTVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS----------SCEEEEEEC---SSSEEEEEE-SSEEEEEESST
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC----------CccEEEEec---CCCeEEEEc-CCcEEEEcccC
Confidence 355689888888766 668999999999888776553 335555664 334555444 56899999987
Q ss_pred CCcceEEEeecC----CCeEEEEecCCCCEEEEEeC-------CCcEEEEEccCCeEEeeeeCC----------------
Q 014154 247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRTGKLLGCFIGK---------------- 299 (430)
Q Consensus 247 ~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~---------------- 299 (430)
...|+..+..|. ..|..-..+++.++++..+- .|.+.+|..+.+.. +.+.+|
T Consensus 136 ~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 136 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEES 214 (365)
T ss_dssp TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCE
T ss_pred CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceeeeeeeeeEEEecCCCCCCc
Confidence 667888888763 35666667888888765542 26677887654321 111111
Q ss_pred ---------------------CC----------------------CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154 300 ---------------------CS----------------------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 300 ---------------------~~----------------------~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 336 (430)
+. .-.-++..++....++.-+.-|.|++||+.++.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 01 11223333444456777778899999999999999
Q ss_pred eEEEeeccccceEEeeecc-ccccccccCCCCceEecCCCC
Q 014154 337 SAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~~~~~ 376 (430)
..-++. ...|+..+.. ..+-++.....|.|.--..+.
T Consensus 295 ~~nrIS---~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 295 YMNRIS---GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEECC---SSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EEeccC---CCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 874432 2234444433 334446666777776554443
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.53 E-value=0.051 Score=49.49 Aligned_cols=238 Identities=9% Similarity=-0.097 Sum_probs=133.4
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 146 (430)
+|+.+ ....|+..++........+.. ...+.++.+-.... ..+++-...+.+..+++.....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~~~~-------~lywsD~~~~~I~~~~~~g~~~- 146 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASN-------RIYWSDLSQRMICSTQLDRAHG- 146 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECS---------CSCEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred eeEEe-ccceeEEEccCCcceeEeccc---------cCcceEEeeeeccC-------ceEEEecCCCeEEEEEcccCCC-
Confidence 44444 347888888865543332221 13455565544332 2344444556666555432110
Q ss_pred ccCCCcceEEeeecCCCceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
......+.. ..-.....+++++.+..|+ +-...+.|.+.+++.......+... ......+++ .|
T Consensus 147 ---~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~---------~~~P~~iav--dp 211 (400)
T 3p5b_L 147 ---VSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVV--DP 211 (400)
T ss_dssp ----CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS---------SCCEEEEEE--ET
T ss_pred ---CCcceEEEe-CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC---------CCCcceEEE--ec
Confidence 000112222 2234677899988554454 4456778999998754433222211 144678888 66
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCC-CC
Q 014154 226 DHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS 301 (430)
Q Consensus 226 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~ 301 (430)
.+..|+.... .+.|...++..... ...+...-.....|+++|++..|+.+. ..+.|..+|+........+... .-
T Consensus 212 ~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l 290 (400)
T 3p5b_L 212 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 290 (400)
T ss_dssp TTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred ccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence 5555554442 36899999875332 223333335678999998887777665 4578999998644332222221 12
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
....++++. .+.++++-...+.|..+|..+|+.+..+
T Consensus 291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 345677773 3345556566788999998888877764
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.52 E-value=0.041 Score=48.30 Aligned_cols=163 Identities=6% Similarity=-0.116 Sum_probs=99.9
Q ss_pred CceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe--CCCcE
Q 014154 163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i 239 (430)
.....+++++.+..|+ +-...+.|.+++++........... ......+++ .|.+..|+.+. ..+.|
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~---------~~~P~giav--dp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE---------LDQPRAIAL--DPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEEEEE--EGGGTEEEEEECSSSCEE
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC---------CCCccEEEE--eCCCCEEEEEecCCCCEE
Confidence 3466788887555554 4455678999998653322222111 145678888 66555555544 35788
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 318 (430)
...++..... .......-.....|+++|++..|+.+. ..+.|..+|+........+.+. ......+++.. +.++.+
T Consensus 148 ~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~glav~~-~~lywt 224 (318)
T 3sov_A 148 ERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFE-DILYWT 224 (318)
T ss_dssp EEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CSCEEEEEEET-TEEEEE
T ss_pred EEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CCCceEEEEeC-CEEEEE
Confidence 8888875322 222222234568999999777666654 5678999998643322222322 44567788753 344555
Q ss_pred EeCCCcEEEEECCCCceeeEE
Q 014154 319 CGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 319 ~~~dg~i~iwd~~~~~~~~~~ 339 (430)
-...+.|..++..+|+....+
T Consensus 225 d~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 225 DWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp ETTTTEEEEEETTTCCSCEEE
T ss_pred ecCCCeEEEEECCCCCceEEE
Confidence 556788999999888876664
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.38 E-value=0.074 Score=47.99 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=119.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
+.-++|..+.|+.-. ..++.+||+++...+....-. ..|.-=.|. + .+.|+..+ +..|+-|++..
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~----------e~VvfWkWi-s--~~~l~lVT-~taVyHWsi~~ 134 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI-S--LNTVALVT-DNAVYHWSMEG 134 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS----------SCCCEEEEE-E--TTEEEEEC-SSEEEEEESSS
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC----------CCceEEEec-C--CCeEEEEc-CCeeEEecccC
Confidence 456788888887765 669999999998888776553 234444564 3 34455443 56899999987
Q ss_pred CCcceEEEeecC----CCeEEEEecCCCCEEEEEeC-------CCcEEEEEccCCeEEeeeeCC----------------
Q 014154 247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRTGKLLGCFIGK---------------- 299 (430)
Q Consensus 247 ~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~---------------- 299 (430)
...|+..+..|. ..|..-..+++.++++..+- .|.+.+|..+.+.. +.+.+|
T Consensus 135 ~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 135 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEES 213 (494)
T ss_dssp SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEE
T ss_pred CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCc
Confidence 667888888763 35666677888888875442 36677887654321 111111
Q ss_pred ---------------------C----------------------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154 300 ---------------------C----------------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336 (430)
Q Consensus 300 ---------------------~----------------------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 336 (430)
+ ..-..++..++....++.-+.-|.|++||+.++.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 0 111233444455556777788899999999999999
Q ss_pred eEEEeeccccceEEeeecc-ccccccccCCCCceEecCCCC
Q 014154 337 SAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 337 ~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~~~~~ 376 (430)
..-.+. ...|+..+.. ..+-++.....|.|.--..+.
T Consensus 294 ~~nrIs---~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 294 YMNRIS---GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEECC---SSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eeeccc---CCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 874332 2233433333 334445556667665554443
No 297
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00069 Score=59.74 Aligned_cols=151 Identities=9% Similarity=0.119 Sum_probs=88.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEE-eCCCcEEEEECCCCCcce
Q 014154 174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAG-TNDHQVRLYDTSAQRRPV 251 (430)
Q Consensus 174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~ 251 (430)
+..+++++.||.|+.+|..+|+..+++..... .++....-...+ ++..++.. +.||.|..++..++.. .
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~--------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~ 80 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENF--------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-K 80 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGS--------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-E
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCcc--------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-E
Confidence 35788999999999999999999999876410 011111100011 23333333 5899999999887643 2
Q ss_pred EEEee----cCCCeEE---EEe-c----CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC------eEEEEec---
Q 014154 252 MSFDF----RETPIKA---VAE-E----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS------IRSIARH--- 310 (430)
Q Consensus 252 ~~~~~----~~~~i~~---~~~-s----p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------v~~i~~~--- 310 (430)
..+.. ...++.. ..+ . -.+..+++|+.+|.+...|+++|+.+.++....... ..|....
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~ 160 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK 160 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence 22221 1122221 001 0 135688999999999999999999999987531111 0011110
Q ss_pred --CCCCeEEEEeCCCcEEEEECCCCc
Q 014154 311 --PTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 311 --~~~~~l~s~~~dg~i~iwd~~~~~ 334 (430)
..+..|+.+..+..+.+.+ ++|+
T Consensus 161 ~d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 161 LQECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp ----CCEEEEEEEEEECEECC-TTSC
T ss_pred cccCCCeEEEecceEEEEEEC-CCCC
Confidence 1235677777777777777 4554
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.37 E-value=0.012 Score=51.38 Aligned_cols=158 Identities=8% Similarity=0.005 Sum_probs=102.9
Q ss_pred ceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceEEEee----cC--CCeEEEEe---cCCCCEEEEEe-------
Q 014154 215 WFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDF----RE--TPIKAVAE---EPDSFNIYIGN------- 277 (430)
Q Consensus 215 ~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~----~~--~~i~~~~~---sp~~~~l~~~~------- 277 (430)
...+++| .+....|..++ ..++|..||...+......+.. .. ..+..|.| .|+++++++..
T Consensus 14 yPE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCSCEEE--ETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred CCcCccC--cCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3567788 45444555545 7999999999754321112221 11 13578999 68887777644
Q ss_pred ------CCCcEEEEEcc---CCeEEeeeeC--C----------CCCCeEEEEecCCCCeEEEEeCC-CcEEEEECCCCce
Q 014154 278 ------GSGDLASVDIR---TGKLLGCFIG--K----------CSGSIRSIARHPTLPIIASCGLD-SYLRFWDIKTRQL 335 (430)
Q Consensus 278 ------~d~~i~iwd~~---~~~~~~~~~~--~----------~~~~v~~i~~~~~~~~l~s~~~d-g~i~iwd~~~~~~ 335 (430)
.+..|..||+. +++.+....- . .......++..++|+..++++.- +.|..++.. |+.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence 26779999999 7877654431 1 01247899999999999988888 888877765 333
Q ss_pred eeEEEeecc---ccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154 336 LSAVFLKQH---LNEVVFDSAFADKEVA-NAAADAPMLEIQNGN 375 (430)
Q Consensus 336 ~~~~~~~~~---~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~ 375 (430)
+..+.+... .....+.++++|+|.. ++....+.|..++..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 433322211 1122468999999987 555459999998876
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.34 E-value=0.055 Score=48.07 Aligned_cols=201 Identities=7% Similarity=0.010 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCEEEEE------------eCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EE
Q 014154 165 IAFSKVDISEKFSLFG------------GKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF 230 (430)
Q Consensus 165 i~~~~~~~~~~~l~~~------------~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l 230 (430)
...+++.|+|..++++ ..+|.|.++|+.+.. ....+...... .. ...-....+.+....++. +|
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~-~~-~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-LD-ISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS-CC-GGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC-CC-cCceeeeeeEEEECCCCcEEE
Confidence 3455666665444433 268999999997421 11122111000 00 001245666664333443 44
Q ss_pred EEEe-C--CCcEEEEECCCCCcc---eEEEeec-CCCeEEEEecCCCCEEEEEe-----------------CCCcEEEEE
Q 014154 231 VAGT-N--DHQVRLYDTSAQRRP---VMSFDFR-ETPIKAVAEEPDSFNIYIGN-----------------GSGDLASVD 286 (430)
Q Consensus 231 ~s~~-~--dg~i~iwd~~~~~~~---~~~~~~~-~~~i~~~~~sp~~~~l~~~~-----------------~d~~i~iwd 286 (430)
+++. . +.+|.+|++...... +..+.+. -...+.+.+.++|.+.++.. ..|.|..||
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4443 2 457788777653322 2223322 23578899999998777654 124555565
Q ss_pred ccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCC-CceeeEEEeeccccceEEeeeccc-cccc-cc
Q 014154 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NA 362 (430)
Q Consensus 287 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~-~g~~-~~ 362 (430)
. ++......+ -...+.++|+||++.|+.+. ..+.|..|++.. +.....-.+ ......-.++..+ +|.+ ++
T Consensus 210 ~--~~~~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 210 P--NDVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp T--TCCEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEE
T ss_pred C--CeEEEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEE
Confidence 5 333222222 34578999999998776664 568899999863 433221112 1133456778888 5887 43
Q ss_pred cC-CCCceEecC
Q 014154 363 AA-DAPMLEIQN 373 (430)
Q Consensus 363 ~~-~d~~i~~~~ 373 (430)
+. ..+.|..|+
T Consensus 284 ~~~~g~~v~~~~ 295 (355)
T 3sre_A 284 CHPNGMRIFFYD 295 (355)
T ss_dssp EESCHHHHHSCC
T ss_pred ecCCceEEEEEC
Confidence 43 223444443
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.32 E-value=0.002 Score=63.43 Aligned_cols=162 Identities=9% Similarity=-0.118 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC--CCcEEE
Q 014154 165 IAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--DHQVRL 241 (430)
Q Consensus 165 i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~i 241 (430)
...|++++.+..|+ +-...+.|.++++........+.... .....+++ .|.+.+|+.+.. .+.|..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~---------~~P~giav--Dp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---------SKPRAIVV--DPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS---------CCCCCEEC--CSSSSCCEECCCSSSCCEEB
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC---------CCcceEEE--ccCCCcEEEcccCCCCeEEE
Confidence 45678876544444 44556789999987543332222111 33566777 665544444332 267888
Q ss_pred EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeC-CCCCCeEEEEecCCCCeEEEE
Q 014154 242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~ 319 (430)
+++..... ...+...-.....|+|+|++..|+.+. ..+.|..+|+........+.. ........|++..+ .++++.
T Consensus 524 ~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd 601 (699)
T 1n7d_A 524 GGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTD 601 (699)
T ss_dssp CCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEEC
T ss_pred EeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEe
Confidence 87764222 222222223457899999866665554 567899999864332222211 00223445666444 344555
Q ss_pred eCCCcEEEEECCCCceeeEE
Q 014154 320 GLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 320 ~~dg~i~iwd~~~~~~~~~~ 339 (430)
...+.|..++..+++.+..+
T Consensus 602 ~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 602 IINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp STTTCEEEEETTTEEEEECC
T ss_pred CCCCeEEEEEccCCCceEEe
Confidence 56788999998888877764
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.11 Score=48.41 Aligned_cols=163 Identities=9% Similarity=0.016 Sum_probs=89.8
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCeEEEEECC-------CCee-----------eEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154 164 TIAFSKVDIS-EKFSLFGGKGVEVNVWDLD-------KCEK-----------IWTAKPPPKNSLGIFTPTWFTSAAFLSI 224 (430)
Q Consensus 164 ~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~-------~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 224 (430)
....++++|+ +.++++-..++.|+.+|+. ++.. ...+.. .....+...++| +
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-------~~~~~~p~~ia~--~ 318 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-------IADPSWEFQIFI--H 318 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-------CSSSSCCEEEEE--C
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe-------cCCCCCceEEEE--c
Confidence 4567888995 4545555677889999987 4433 111100 001145678999 8
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCCcce---EEEeec---C------------CCeE-EEEec-------CCCCEEEEEe
Q 014154 225 DDHRKF-VAGTNDHQVRLYDTSAQRRPV---MSFDFR---E------------TPIK-AVAEE-------PDSFNIYIGN 277 (430)
Q Consensus 225 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~---~~~~~~---~------------~~i~-~~~~s-------p~~~~l~~~~ 277 (430)
|+++.| ++-+..+.|+.++.......+ ..+-+. . .... .++.. +++.++++=.
T Consensus 319 p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~ 398 (496)
T 3kya_A 319 PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR 398 (496)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG
T ss_pred CCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC
Confidence 999954 444567788886654311111 223221 0 1233 44454 4566666666
Q ss_pred CCCcEEEEEccCCeEEeeeeCCC-----------------------CCCeEEEEecCC-CCeEEEEeCCCcEEEEECCCC
Q 014154 278 GSGDLASVDIRTGKLLGCFIGKC-----------------------SGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 278 ~d~~i~iwd~~~~~~~~~~~~~~-----------------------~~~v~~i~~~~~-~~~l~s~~~dg~i~iwd~~~~ 333 (430)
..+.|+.++ .++.. .++.+.. -.....|+++++ +.++++=..+..||.+++...
T Consensus 399 ~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 399 LNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp GGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred CCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 778899998 46643 3443210 023567777775 555555455667777776654
Q ss_pred ceee
Q 014154 334 QLLS 337 (430)
Q Consensus 334 ~~~~ 337 (430)
..++
T Consensus 477 ~~~~ 480 (496)
T 3kya_A 477 ENVA 480 (496)
T ss_dssp C---
T ss_pred cccc
Confidence 4443
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.27 E-value=0.081 Score=47.66 Aligned_cols=147 Identities=8% Similarity=-0.007 Sum_probs=94.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC---
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--- 248 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--- 248 (430)
.++..++++- ++.||.-++......+.+.....-.+ ..+..+.. +|+|.+|+..+ +..|.|-.+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f-----~~i~qlvl--SpsG~lLAl~g-~~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVL-----DDTFHVIS--STSGDLLCLFN-DNEIFVMEVPWGYSNV 100 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCC-----CTTCEEEE--CTTSSEEEEEC-SSEEEEEECCTTCSCC
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCccccc-----CceeEEEE--CCCCCEEEEec-CCeEEEEEecCccccC
Confidence 3566666544 35888888764433333333210000 24666777 89999999865 5688998887322
Q ss_pred ------cc--eEEEee------cCCCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCe--EEeeeeCC--------CC
Q 014154 249 ------RP--VMSFDF------RETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGK--LLGCFIGK--------CS 301 (430)
Q Consensus 249 ------~~--~~~~~~------~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~--------~~ 301 (430)
.+ ...+.. ...+|..+.|+|-+ ..|++-..|+.|++||+.... +. .+... ..
T Consensus 101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV 179 (452)
T ss_dssp CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence 01 123332 24679999999954 689999999999999998521 22 22211 12
Q ss_pred CCeEEEEecCCCCeEEEEe--CCCcEEEE
Q 014154 302 GSIRSIARHPTLPIIASCG--LDSYLRFW 328 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~--~dg~i~iw 328 (430)
..|.+++|.+++-.|...+ ..|.|+-.
T Consensus 180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 5789999999887666655 77888755
No 303
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.0091 Score=55.51 Aligned_cols=155 Identities=8% Similarity=0.014 Sum_probs=94.3
Q ss_pred ceeEEEEeecC-C-CCEEEEEeCCCcEEEEECCCCCcceEEEeec----CCCeEEEEe-------cCCCCEEEEEeCCC-
Q 014154 215 WFTSAAFLSID-D-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIKAVAE-------EPDSFNIYIGNGSG- 280 (430)
Q Consensus 215 ~v~~~~~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~-------sp~~~~l~~~~~d~- 280 (430)
....++| .| + ++++++....+.|++.|+..+. +..+-.. ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~--dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 140 DNGRLAF--DPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp SEEEEEE--ETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred CCCEEEE--ccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 4667888 66 2 4444444445779999998743 3443322 124789999 99999777776554
Q ss_pred ------cEEEEEccC-CeEE-----eeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECC-------CCce-----
Q 014154 281 ------DLASVDIRT-GKLL-----GCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIK-------TRQL----- 335 (430)
Q Consensus 281 ------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~-------~~~~----- 335 (430)
.|.+++... +... ..+.. -.....++++|++ .++++-..++.|+.+|+. ++..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 266666433 2221 12221 1234678899954 445556677889999997 5553
Q ss_pred ------eeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154 336 ------LSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 336 ------~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~ 376 (430)
...+...+. ....+.++|+|+|.. ++-.....|+.++.+.
T Consensus 294 ~~~~g~~~~l~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 294 KNNPNTFKQLFTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGCTTTEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccccccceeEecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 222211111 233478999999983 6666777888865543
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.23 E-value=0.17 Score=49.02 Aligned_cols=220 Identities=8% Similarity=-0.019 Sum_probs=131.7
Q ss_pred ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154 130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSL 208 (430)
Q Consensus 130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~ 208 (430)
+..+.+...++.... ...+..+..-..+..++|++.+..|+.+. .++.|..+++........+....
T Consensus 12 s~~~~I~~i~l~~~~--------~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~---- 79 (628)
T 4a0p_A 12 SRRADIRRISLETNN--------NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL---- 79 (628)
T ss_dssp EETTEEEEEESSCTT--------CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC----
T ss_pred EeCCcEEEEECCCCC--------cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC----
Confidence 456667666664221 11222222234678999999777776554 56889999887543322222211
Q ss_pred CCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEE
Q 014154 209 GIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASV 285 (430)
Q Consensus 209 ~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iw 285 (430)
.....+++ .+. +++.++-...+.|.+.++..... ...+...-.....|++.|...+|+.... .+.|...
T Consensus 80 -----~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 80 -----DYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp -----SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred -----CCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence 33567777 544 44555555678899999976432 2222233356789999997666666652 5678888
Q ss_pred EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccC
Q 014154 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAA 364 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 364 (430)
++........+. . -.....|++++++..|+.+. ..+.|..+|+..... .. +...... ..++++..+.-+++-.
T Consensus 152 ~~dG~~~~~l~~-~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v--~~~~l~~-P~glav~~~~ly~tD~ 225 (628)
T 4a0p_A 152 AMDGSERTTLVP-N-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV--IADDLPH-PFGLTQYQDYIYWTDW 225 (628)
T ss_dssp ETTSCSCEEEEC-S-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EEECCSC-EEEEEEETTEEEEEET
T ss_pred eCCCCceEEEEC-C-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE--eeccCCC-ceEEEEECCEEEEecC
Confidence 875443322232 2 45789999999877666664 567899999875443 22 2222233 3577776543335555
Q ss_pred CCCceEecCCC
Q 014154 365 DAPMLEIQNGN 375 (430)
Q Consensus 365 ~d~~i~~~~~~ 375 (430)
..+.|...+..
T Consensus 226 ~~~~I~~~dk~ 236 (628)
T 4a0p_A 226 SRRSIERANKT 236 (628)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEEECC
Confidence 66777777653
No 305
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.18 E-value=0.058 Score=56.14 Aligned_cols=235 Identities=13% Similarity=0.076 Sum_probs=128.8
Q ss_pred CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
+|..+.||.-. ..++.|+|+++...+..+... .. +.+|..-+ ...+.--.+..+..|++.
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~---------e~---VvfWkWis-------~~~l~lVT~~aVyHW~~~ 133 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DD---VTFWKWIS-------LNTVALVTDNAVYHWSME 133 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccC---------CC---ceEEEecC-------CCeeEEEcCCeEEEeccC
Confidence 66667777654 688999999877766665431 12 45565433 344444556678999885
Q ss_pred ecCccccCCCcceEEeeecC---CCceEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154 142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF 211 (430)
Q Consensus 142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 211 (430)
.. ..++++|+... +..|..-..+++.++++..| -.|.+.+|..+.+.. ..+.+|......
T Consensus 134 ~~-------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~-- 203 (1630)
T 1xi4_A 134 GE-------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQ-- 203 (1630)
T ss_pred CC-------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhhe--
Confidence 32 23555555321 35577777788888877543 357888888865322 222333211110
Q ss_pred CCcceeEEEEeecCC-CCEEEEEeC---CCcEEEEECCCC---Ccc-----eEEEeec---CCCeEEEEecCCCCEEEEE
Q 014154 212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ---RRP-----VMSFDFR---ETPIKAVAEEPDSFNIYIG 276 (430)
Q Consensus 212 ~~~~v~~~~~~~~~~-~~~l~s~~~---dg~i~iwd~~~~---~~~-----~~~~~~~---~~~i~~~~~sp~~~~l~~~ 276 (430)
+.....+. ..+++.+.. .+.++|-++... ..+ +..+... ..-..++..++.-..++.-
T Consensus 204 -------~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 204 -------FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred -------eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 01100011 112221111 268888887543 111 1111111 2233467777777888888
Q ss_pred eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154 277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 277 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~ 334 (430)
+.-|.|++||+.++.++..-+-. ..+|...+-+....-++.....|.|.-..+....
T Consensus 277 tk~G~~~~~d~~t~~~i~~~ris-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ecCceEEEEecccchhhhhcccc-CCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 99999999999999987654433 3445444443332233334455655555554433
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.04 E-value=0.15 Score=44.92 Aligned_cols=191 Identities=9% Similarity=-0.040 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..+..+.+++ + .++.++..+.|+. ..+.++.-........ .+..+..+.+ .+++..++. +.++.|..
T Consensus 80 ~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~------~~~~~~~i~~--~~~~~~~~~-~~~g~v~~- 146 (327)
T 2xbg_A 80 YRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQSWSQIPLDPK------LPGSPRLIKA--LGNGSAEMI-TNVGAIYR- 146 (327)
T ss_dssp CEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSSCEECCCCTT------CSSCEEEEEE--EETTEEEEE-ETTCCEEE-
T ss_pred ccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCCceECccccC------CCCCeEEEEE--ECCCCEEEE-eCCccEEE-
Confidence 3567778875 3 3444555664443 2332332111111100 1133566766 345555554 45665432
Q ss_pred ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc--cCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI--RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
....+..-..........+..+.+.|++.+++++...+..+-.|- .+-+.+. ... ...+..+.+.+++.++ .++
T Consensus 147 S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~-~~~~~~~~~~~~g~~~-~~~ 222 (327)
T 2xbg_A 147 TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTT-SRRLHNMGFTPDGRLW-MIV 222 (327)
T ss_dssp ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCS-SSCEEEEEECTTSCEE-EEE
T ss_pred EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCC-CCccceeEECCCCCEE-EEe
Confidence 122233222222334567899999999888776644433333442 2333332 122 5678899999998755 455
Q ss_pred CCCcEEEEECCCCceeeEEEee-ccccceEEeeeccccccccccCCCCceE
Q 014154 321 LDSYLRFWDIKTRQLLSAVFLK-QHLNEVVFDSAFADKEVANAAADAPMLE 370 (430)
Q Consensus 321 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~d~~i~ 370 (430)
.+|.+++.+...++.-..+... -.....+.++++.+++.+++++.++.+.
T Consensus 223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 6888877653334433322111 0111236788899888875555566663
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.03 E-value=0.045 Score=48.65 Aligned_cols=152 Identities=10% Similarity=0.072 Sum_probs=89.0
Q ss_pred eEEEEeecCCCCEEEEE------------eCCCcEEEEECCCCCcceEE--Eee-----cCCCeEEEEecC--CCC-EEE
Q 014154 217 TSAAFLSIDDHRKFVAG------------TNDHQVRLYDTSAQRRPVMS--FDF-----RETPIKAVAEEP--DSF-NIY 274 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~s~------------~~dg~i~iwd~~~~~~~~~~--~~~-----~~~~i~~~~~sp--~~~-~l~ 274 (430)
..++. .|+|..++++ ..+|.|.++|+.+....... +.+ .......+.+.+ ++. +|+
T Consensus 53 EDi~~--~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 53 EDLEI--LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CEEEE--CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred ceeEE--cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44555 5666554444 26899999999843211222 222 123567777755 343 444
Q ss_pred EE-eC--CCcEEEEEccCC--e--EEeeeeCCCCCCeEEEEecCCCCeEEEEeC-----------------CCcEEEEEC
Q 014154 275 IG-NG--SGDLASVDIRTG--K--LLGCFIGKCSGSIRSIARHPTLPIIASCGL-----------------DSYLRFWDI 330 (430)
Q Consensus 275 ~~-~~--d~~i~iwd~~~~--~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----------------dg~i~iwd~ 330 (430)
+. .. +..|.+|++... . .+..+.+..-...+.+.+.++|.+.++... .|.|+-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44 33 467788776543 2 344455443456899999999988777641 244555554
Q ss_pred CCCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154 331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND 376 (430)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~ 376 (430)
++. ..+ ..+ .. ..+.++|+||++. ++-+..+.|..|+...
T Consensus 211 --~~~-~~~-~~~-l~-~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 --NDV-RVV-AEG-FD-FANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp --TCC-EEE-EEE-ES-SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --CeE-EEe-ecC-Cc-ccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 332 221 222 12 2489999999976 5566678898888764
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.02 E-value=0.32 Score=48.40 Aligned_cols=164 Identities=9% Similarity=-0.104 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CC-CcE
Q 014154 163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-HQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-g~i 239 (430)
.....|++++.+..|+.+ ...+.|.+.++........+... ......|++ .|....|+.+. .. +.|
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~---------l~~P~gIaV--Dp~~g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVV--DPVHGFMYWTDWGTPAKI 539 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT---------TCCEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC---------CCCcceEEE--ecCCCCEEEecCCCCCeE
Confidence 456789998877655554 55778999998754332222211 144788899 66655555444 22 678
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~ 317 (430)
...++..... ...+...-.....|++++.+..|+.+. ..+.|..+++........+... .-....+|++..+ .+++
T Consensus 540 ~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYw 617 (791)
T 3m0c_C 540 KKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFW 617 (791)
T ss_dssp EEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEE
T ss_pred EEEecCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEE
Confidence 8888875332 233333335688999998777777665 4567999998644333333321 0223456766332 3444
Q ss_pred EEeCCCcEEEEECCCCceeeEE
Q 014154 318 SCGLDSYLRFWDIKTRQLLSAV 339 (430)
Q Consensus 318 s~~~dg~i~iwd~~~~~~~~~~ 339 (430)
+-...+.|...|..+|+.+..+
T Consensus 618 tD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 618 TDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTTTEEEEEETTTCCCCEEE
T ss_pred EECCCCEEEEEeCCCCcceEEe
Confidence 4456678888888777766554
No 309
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.76 E-value=0.071 Score=48.02 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=84.4
Q ss_pred ceEEeeecC---CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------------eEeeCCCCCCCCCCcCCccee
Q 014154 153 TVKSWNVCA---SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK------------IWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 153 ~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~~v~ 217 (430)
.-+++.... -..|..+..+|+|++||..+.. .|.|..+..+.. .+.+.... ........|.
T Consensus 53 ~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~---~~~~~~s~I~ 128 (452)
T 3pbp_A 53 LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE---EEVGPKSSIK 128 (452)
T ss_dssp SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG---CC--CCCCEE
T ss_pred cceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCC---cccCCCCcee
Confidence 556666652 2367889999999999988765 899988873221 11111110 0111236799
Q ss_pred EEEEee-cCCCCEEEEEeCCCcEEEEECCC-CCcceEEEee---------cCCCeEEEEecCCCCEEEEEe--CCCcEEE
Q 014154 218 SAAFLS-IDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDF---------RETPIKAVAEEPDSFNIYIGN--GSGDLAS 284 (430)
Q Consensus 218 ~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~---------~~~~i~~~~~sp~~~~l~~~~--~d~~i~i 284 (430)
.+.|+| ...+..|++-..|+.|++||+.. ...|. .++. ....|.+++|.+++-.|++.+ ..|.|+-
T Consensus 129 qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 129 KVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 999942 11356899999999999999985 23344 3321 225788999999888888766 7788765
Q ss_pred E
Q 014154 285 V 285 (430)
Q Consensus 285 w 285 (430)
.
T Consensus 208 l 208 (452)
T 3pbp_A 208 F 208 (452)
T ss_dssp E
T ss_pred E
Confidence 4
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.58 E-value=0.16 Score=44.00 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCe---eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----CcE
Q 014154 173 SEKFSLFGGKG-----VEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQV 239 (430)
Q Consensus 173 ~~~~l~~~~~d-----~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i 239 (430)
++.+++.|+.+ ..+.+||+.+.. -... ..... +..-.+++. .++.+++.|+.+ ..+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~-~~~p~-------~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~ 130 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV-APMNV-------RRGLAGATT---LGDMIYVSGGFDGSRRHTSM 130 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEE-CCCSS-------CCBSCEEEE---ETTEEEEECCBCSSCBCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEEC-CCCCC-------CccceeEEE---ECCEEEEEcccCCCcccceE
Confidence 44555566643 468899987755 2211 11110 011112222 156777777644 358
Q ss_pred EEEECCCCCcceEEEee-c--CCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEee--eeCCCCCCeEEEEe
Q 014154 240 RLYDTSAQRRPVMSFDF-R--ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIAR 309 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~ 309 (430)
.+||+.+.. ...+.. . .....++. .++++++.|+.+ ..+.+||+.+.+-... +... ......+.+
T Consensus 131 ~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~ 205 (301)
T 2vpj_A 131 ERYDPNIDQ--WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGVALL 205 (301)
T ss_dssp EEEETTTTE--EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE
T ss_pred EEEcCCCCe--EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-cccceEEEE
Confidence 899988643 222221 1 11112222 256677777654 4689999988764322 2211 112223333
Q ss_pred cCCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154 310 HPTLPIIASCGLD-----SYLRFWDIKTRQLL 336 (430)
Q Consensus 310 ~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 336 (430)
++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 206 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 206 --NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp --TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred --CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 56777777754 46899999876544
No 311
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.11 Score=45.72 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=101.0
Q ss_pred ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE--ccCCeeEEEEeeec
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVT 143 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~v~~~~~~ 143 (430)
.++++++.||.|.-.|..+|+.+..++.- . ..++.... .... ...+.++.. +.+|.+..++..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~------~~p~~~~~--~~~~----~~~~~~~vv~p~~dG~l~a~~~~-- 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-N------FQPLIEIQ--EPSR----LETYETLIIEPFGDGNIYYFNAH-- 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG-G------SCCSEECC--CSCT----TTSSEEEEECCSTTTEEEEEETT--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC-c------cCCcEEec--CCcc----ccCCcEEEEEECCCCEEEEEECC--
Confidence 46889999999999999999988887652 0 00111100 0000 000123222 456666555532
Q ss_pred CccccCCCcceEEeeecCCCceEE--EEEc-----------CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 144 KVSAESSCSTVKSWNVCASGTIAF--SKVD-----------ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~i~~--~~~~-----------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
+| ...|.......+.. +... ..+..+++|+.+|.+...|+.+|+.++++........
T Consensus 76 -------~G-~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~-- 145 (339)
T 2be1_A 76 -------QG-LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY-- 145 (339)
T ss_dssp -------TE-EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---
T ss_pred -------CC-cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc--
Confidence 12 22343321111100 1110 1466888999999999999999999999875431100
Q ss_pred cCCcceeEEE---EeecCCCCEEEEEeCCCcEEEEECCCCCcceEE---EeecCCC--e-EEEEecCCCCEEEEEeCCCc
Q 014154 211 FTPTWFTSAA---FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS---FDFRETP--I-KAVAEEPDSFNIYIGNGSGD 281 (430)
Q Consensus 211 ~~~~~v~~~~---~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~--i-~~~~~sp~~~~l~~~~~d~~ 281 (430)
.......|.. +.....+..|+.+..+..+.+.+ ++++.-... ....... + .+-..+.++.+ +.++.||.
T Consensus 146 ~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~ 223 (339)
T 2be1_A 146 FGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKS 223 (339)
T ss_dssp -------------------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTE
T ss_pred ccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCE
Confidence 0000000001 00001234666666666666666 333210011 1111000 0 00001234656 55789999
Q ss_pred EEEEEccCCeEEe
Q 014154 282 LASVDIRTGKLLG 294 (430)
Q Consensus 282 i~iwd~~~~~~~~ 294 (430)
|..+|..+|+.+.
T Consensus 224 v~A~d~~~G~~~W 236 (339)
T 2be1_A 224 LLASDLDFRIARW 236 (339)
T ss_dssp EEEECSTTCCEEE
T ss_pred EEEEECCCCcEEE
Confidence 9999999998876
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.41 E-value=0.055 Score=48.31 Aligned_cols=140 Identities=17% Similarity=0.111 Sum_probs=79.3
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe---ecCCCeEEEEecCC---CCEEEEEeC----C----
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPD---SFNIYIGNG----S---- 279 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~sp~---~~~l~~~~~----d---- 279 (430)
.....++| .|++++++ +..+|.|+++|.. +...+..+. ........|+++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~--~pdG~l~V-~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAP--LGGGRYLV-TERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEE--EETTEEEE-EETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEE--cCCCeEEE-EeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 44678899 67887555 4667999999743 332222221 12356889999998 556655543 2
Q ss_pred CcEEEEEccCC-------eEE-eeeeCCCCCCeEEEEecCCCCeEEEEeC-------------CCcEEEEECCCCce---
Q 014154 280 GDLASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGL-------------DSYLRFWDIKTRQL--- 335 (430)
Q Consensus 280 ~~i~iwd~~~~-------~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~--- 335 (430)
+.|..|+.... +.+ ..+..........|.|.|+|.++++.+. .|.|.-++.. ++.
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCC
Confidence 56777877644 111 1232211123467999999986666443 2455555553 221
Q ss_pred ----eeEEEeeccccceEEeeeccc-cccc
Q 014154 336 ----LSAVFLKQHLNEVVFDSAFAD-KEVA 360 (430)
Q Consensus 336 ----~~~~~~~~~~~~~v~~~~~s~-~g~~ 360 (430)
-..+...++ .. ...++|+| +|.+
T Consensus 184 npf~~~~i~a~G~-rn-p~Gla~d~~~g~l 211 (354)
T 3a9g_A 184 NPFPNSPIWSYGH-RN-PQGIDWHRASGVM 211 (354)
T ss_dssp SSSTTCCEEEECC-SC-CCEEEECTTTCCE
T ss_pred CCCCCCcEEEEcc-CC-cceEEEeCCCCCE
Confidence 001112233 22 26889999 6776
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.33 E-value=0.22 Score=43.06 Aligned_cols=146 Identities=13% Similarity=0.086 Sum_probs=76.3
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----cEEEE
Q 014154 173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLY 242 (430)
Q Consensus 173 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iw 242 (430)
++.+++.|+.+ ..+.+||..+.+-...-.... . . .....+.+ ++.+++.|+.++ .+.+|
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~ 129 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD-R--R----STLGAAVL----NGLLYAVGGFDGSTGLSSVEAY 129 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS-C--C----BSCEEEEE----TTEEEEEEEECSSCEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc-c--c----cceEEEEE----CCEEEEEcCCCCCccCceEEEE
Confidence 45555666643 358889987765332211111 0 0 11122223 567777777653 57788
Q ss_pred ECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-------CcEEEEEccCCeEEee--eeCCCCCCeEEEEec
Q 014154 243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH 310 (430)
Q Consensus 243 d~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-------~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~ 310 (430)
|+.+.. ...+.. ......++. -++++++.|+.+ ..+.+||+.+.+-... +... ......+.+
T Consensus 130 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~- 203 (302)
T 2xn4_A 130 NIKSNE--WFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGVL- 203 (302)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE-
T ss_pred eCCCCe--EeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEEE-
Confidence 988643 222221 111112222 256666666542 4588999987764322 2221 112223333
Q ss_pred CCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154 311 PTLPIIASCGLD-----SYLRFWDIKTRQLL 336 (430)
Q Consensus 311 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 336 (430)
++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 204 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 204 -NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp -TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred -CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 66777777754 36899999876543
No 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.32 E-value=0.84 Score=44.08 Aligned_cols=162 Identities=6% Similarity=-0.126 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC--CCcE
Q 014154 163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--DHQV 239 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i 239 (430)
.....+++++.+..|+.+ ...+.|.+.+++.......+...- .....+++ .|.+..|+.+.. .+.|
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------~~P~~Iav--dp~~g~ly~tD~g~~~~I 152 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------DQPRAIAL--DPSSGFMYWTDWGEVPKI 152 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCCEEE--ETTTTEEEEEECSSSCEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------CCCceEEE--ecCCCeEEEeccCCCCEE
Confidence 467889999866655554 557889999987543322221111 34677888 665444544442 4577
Q ss_pred EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 318 (430)
...++.... ........-.....|++++++..|+.+. ..+.|..+|+..........+. .....+|++..+ .++++
T Consensus 153 ~r~~~dG~~-~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~gi~~~~~-~ly~t 229 (619)
T 3s94_A 153 ERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFED-ILYWT 229 (619)
T ss_dssp EEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEE
T ss_pred EEEECCCCc-eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-CCCceEEEEeCC-EEEEe
Confidence 777776432 2223322334678999999776666654 4578999998654433222222 223456777555 33444
Q ss_pred EeCCCcEEEEECCCCceeeE
Q 014154 319 CGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 319 ~~~dg~i~iwd~~~~~~~~~ 338 (430)
-...+.|...|..+++....
T Consensus 230 d~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 230 DWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CTTTCSEEEEESSSCCCCEE
T ss_pred cCCCCEEEEEECCCCcccEE
Confidence 44667899999888765443
No 315
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.24 E-value=0.11 Score=46.21 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=61.7
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEe---ecCCCeEEEEecCC---CCEEEEEeCC------C
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFD---FRETPIKAVAEEPD---SFNIYIGNGS------G 280 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~---~~~~~i~~~~~sp~---~~~l~~~~~d------~ 280 (430)
.....++| .|++.++++ ..+|.|.+++ .+.. .+..+. ........|+|+|+ +..|+++... +
T Consensus 31 ~~P~~ia~--~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAF--LPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEE--CTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEE--cCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34678899 789985554 6679999998 3221 122111 12356789999998 5566555432 6
Q ss_pred cEEEEEccCCe-----EE-eeeeC--CCCCCeEEEEecCCCCeEEEEe
Q 014154 281 DLASVDIRTGK-----LL-GCFIG--KCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 281 ~i~iwd~~~~~-----~~-~~~~~--~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
.|..|+...+. .+ ..+.. ........++|.|+|.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 78888876432 12 22331 1012346899999997666543
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.21 E-value=0.4 Score=44.36 Aligned_cols=106 Identities=11% Similarity=0.041 Sum_probs=62.1
Q ss_pred cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEee------cCCCeEEEEecCC---CCEEEEEeC-----
Q 014154 214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF------RETPIKAVAEEPD---SFNIYIGNG----- 278 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~------~~~~i~~~~~sp~---~~~l~~~~~----- 278 (430)
.....++| .|+++++++-...+.|++++..++.. .+..+.. ....+..|+|+|+ +.+|++...
T Consensus 27 ~~P~~~a~--~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLW--GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEE--cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34678999 78998777644445788888754432 1222211 2356779999996 556655542
Q ss_pred --------CCcEEEEEccCC-------eEEe-eeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154 279 --------SGDLASVDIRTG-------KLLG-CFIGKCSGSIRSIARHPTLPIIASCGL 321 (430)
Q Consensus 279 --------d~~i~iwd~~~~-------~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~ 321 (430)
...|.-|++... +.+. .+..........|+|.|+|.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1122 122211235789999999987776553
No 317
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.19 E-value=0.63 Score=41.36 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=37.8
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe----E--EeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK----L--LGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~----~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
.....++| .++.++++....+.|...++.... . ...+... ...+..+++.|||.++++..
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence 35567777 467666666566778877775332 1 1222222 45789999999997666653
No 318
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.11 E-value=1.1 Score=43.32 Aligned_cols=197 Identities=8% Similarity=0.003 Sum_probs=112.4
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEE
Q 014154 163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVR 240 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~ 240 (430)
..+..++|++.+..|+.+. ..+.|+.++++.......+... ...+..+++ .+ .+++.++-+..+.|.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~---------~~~p~GlAv--D~~~~~lY~tD~~~~~I~ 417 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ---------IAHPDGIAV--DWVARNLYWTDTGTDRIE 417 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSCCCEEEE--ETTTTEEEEEETTTTEEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC---------CCCcCceEE--ecccCcEEEEeCCCCcEE
Confidence 3467888988666666554 4678888888653322222211 134667888 54 455566656678999
Q ss_pred EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 318 (430)
+.++..... ...+...-....+|++.|...+|+.... ...|...++. |.....+....-...+.|++++++..|+.
T Consensus 418 v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~ 495 (619)
T 3s94_A 418 VTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYW 495 (619)
T ss_dssp EEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred EEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEE
Confidence 999986432 2222223356789999997556655542 3567777764 33222232211457789999987777766
Q ss_pred Ee-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 319 CG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 319 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
+. ..+.|..+++.... ...+ +.+..... .+++...+.-+.+-...+.|...+..
T Consensus 496 aD~~~~~I~~~~~dG~~-~~~~-~~~~l~~P-~glav~~~~ly~tD~~~~~I~~~~k~ 550 (619)
T 3s94_A 496 GDAKTDKIEVMNTDGTG-RRVL-VEDKIPHI-FGFTLLGDYVYWTDWQRRSIERVHKR 550 (619)
T ss_dssp EETTTTEEEEEESSSCC-CEEE-EECCCCSS-CCEEEETTEEEEECTTSSCEEEEESS
T ss_pred EECCCCEEEEEecCCCc-eEEE-eccCCCCc-EEEEEECCEEEEeecCCCeEEEEEcC
Confidence 64 45678889886433 3332 22222222 44555444222444444555544443
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.10 E-value=0.33 Score=42.07 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=76.1
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC------CcEEEE
Q 014154 173 SEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLY 242 (430)
Q Consensus 173 ~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iw 242 (430)
++.+++.|+.+ ..+.+||+.+.+-.......... .....+.+ ++.+++.|+.+ ..+.+|
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~ 123 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-------DSLAACAA----EGKIYTSGGSEVGNSALYLFECY 123 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-------BSCEEEEE----TTEEEEECCBBTTBSCCCCEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-------cceeEEEE----CCEEEEECCCCCCCcEeeeEEEE
Confidence 44555666643 57888998876533221111100 11122223 56777777765 458899
Q ss_pred ECCCCCcceEEEee-c--CCCeEEEEecCCCCEEEEEeC---------CCcEEEEEccCCeEEee--eeCCCCCCeEEEE
Q 014154 243 DTSAQRRPVMSFDF-R--ETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGC--FIGKCSGSIRSIA 308 (430)
Q Consensus 243 d~~~~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~---------d~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~ 308 (430)
|+.+.. ...+.. . .....++. -++++++.|+. -..+.+||+.+.+-... +... ...-..+.
T Consensus 124 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 198 (306)
T 3ii7_A 124 DTRTES--WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVF 198 (306)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred eCCCCc--eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch-hhcceEEE
Confidence 988743 222221 1 11112222 25666666653 34588999988754322 2111 11122233
Q ss_pred ecCCCCeEEEEeCC-----CcEEEEECCCCce
Q 014154 309 RHPTLPIIASCGLD-----SYLRFWDIKTRQL 335 (430)
Q Consensus 309 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~ 335 (430)
+ ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 199 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 199 V--KDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp E--TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred E--CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 3 66677777654 3588999987653
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.08 E-value=0.26 Score=51.46 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=69.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
+.-++|..+.|+.-. ..++.+||+++...+....-. ..|.-=.|. ++ +.|+..+ +..|.-|++..
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~----------e~VvfWkWi-s~--~~l~lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI-SL--NTVALVT-DNAVYHWSMEG 134 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC----------CCceEEEec-CC--CeeEEEc-CCeEEEeccCC
Confidence 345688888777665 678999999987776655443 234444564 33 3444433 55899999976
Q ss_pred CCcceEEEeec----CCCeEEEEecCCCCEEEEEe-------CCCcEEEEEcc
Q 014154 247 QRRPVMSFDFR----ETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIR 288 (430)
Q Consensus 247 ~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~-------~d~~i~iwd~~ 288 (430)
...|+..+..| ...|..-..+++.++++..+ -.|.+.+|...
T Consensus 135 ~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 135 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 55666666655 34566666788888877543 23677788764
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.07 E-value=0.47 Score=40.92 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=91.0
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----CcEEE
Q 014154 173 SEKFSLFGG-KG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL 241 (430)
Q Consensus 173 ~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~i 241 (430)
++.+++.|+ .+ ..+.+||+.+.+-.. +...... . .....+.+ ++.+++.|+.+ ..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r----~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRK--R----RYVASVSL----HDRIYVIGGYDGRSRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSC--C----BSCEEEEE----TTEEEEECCBCSSCBCCCEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChh--h----ccccEEEE----CCEEEEEcCCCCCccCceEEE
Confidence 344555666 32 368899988764322 1111100 0 11122222 56777777755 46889
Q ss_pred EECCCCCcc-eEEEe---ecCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEe--eeeCCCCCCeEEEEec
Q 014154 242 YDTSAQRRP-VMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH 310 (430)
Q Consensus 242 wd~~~~~~~-~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~ 310 (430)
||+.+.... ...+. .......++.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+... ......+.+
T Consensus 83 ~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~- 158 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGAGLVVA- 158 (301)
T ss_dssp EETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBSCEEEEE-
T ss_pred EECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-cccceEEEE-
Confidence 998875400 11221 11111222222 56677777643 468899998776432 22221 112222233
Q ss_pred CCCCeEEEEeCC-----CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC-----CceEecCCCC
Q 014154 311 PTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND 376 (430)
Q Consensus 311 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d-----~~i~~~~~~~ 376 (430)
++.+++.|+.+ ..+.+||+.+.+-...-.+..... ....+. -++.+ +.|+.+ ..+.+|+...
T Consensus 159 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 159 -SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-GAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp -TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred -CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-cceEEE--ECCEEEEEeCCCCCcccceEEEEeCCC
Confidence 66777777654 458899988765433211111111 101111 24555 777654 3466666544
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.79 E-value=0.8 Score=39.56 Aligned_cols=144 Identities=12% Similarity=0.016 Sum_probs=75.7
Q ss_pred CEEEEEeC--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEECCCCC
Q 014154 175 KFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQR 248 (430)
Q Consensus 175 ~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~ 248 (430)
.+++.|+. ...+.+||..+.+-... ...... . .....+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p~~--r----~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDI-RCPFEK--R----RDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEEC-CCCSCC--C----BSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecC-CCCCcc--c----ceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 34555554 35789999987653321 111100 0 11122223 56677777755 568889988743
Q ss_pred cceEEEee-c--CCCeEEEEecCCCCEEEEEeCC------CcEEEEEccCCeEEee--eeCCCCCCeEEEEecCCCCeEE
Q 014154 249 RPVMSFDF-R--ETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIA 317 (430)
Q Consensus 249 ~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~ 317 (430)
...+.. . ......+.+ ++.+++.|+.+ ..+.+||+.+.+-... +... ......+.+ ++.+++
T Consensus 82 --W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv 154 (306)
T 3ii7_A 82 --WYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMVEA--NGLIYV 154 (306)
T ss_dssp --EEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--TTEEEE
T ss_pred --EEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEEEEE--CCEEEE
Confidence 222221 1 111122222 56677777755 4689999988764322 2211 111222223 666667
Q ss_pred EEeC---------CCcEEEEECCCCcee
Q 014154 318 SCGL---------DSYLRFWDIKTRQLL 336 (430)
Q Consensus 318 s~~~---------dg~i~iwd~~~~~~~ 336 (430)
.|+. -..+.+||+.+.+-.
T Consensus 155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~ 182 (306)
T 3ii7_A 155 CGGSLGNNVSGRVLNSCEVYDPATETWT 182 (306)
T ss_dssp ECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred ECCCCCCCCcccccceEEEeCCCCCeEE
Confidence 6653 345889999876543
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.60 E-value=0.74 Score=37.48 Aligned_cols=143 Identities=5% Similarity=-0.085 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH 237 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 237 (430)
.+..++|+|++.+.++ .+|.++-.+..++.. -..+-.. +. ....++.| .+++.+.++ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-----Gw---~~F~a~~f--D~~G~LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-----GW---NQFQFLFF--DPNGYLYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-----CG---GGCSEEEE--CTTSCEEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-----cc---ccceEEEE--CCCCCEEEe--CCC
Confidence 5679999998886665 777777766644211 0111000 00 11366777 889987777 569
Q ss_pred cEEEEECCCCCcc------eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe------EEeeee-CCCCCCe
Q 014154 238 QVRLYDTSAQRRP------VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------LLGCFI-GKCSGSI 304 (430)
Q Consensus 238 ~i~iwd~~~~~~~------~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~-~~~~~~v 304 (430)
.|+-++..+...- ...-...=..+..|.+.|+|.+.++. |+.++-....++. ....+- .. -..-
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~y 184 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTF 184 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGE
T ss_pred EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceE
Confidence 9988876432210 11111111467999999999766665 7775443322111 011111 11 2234
Q ss_pred EEEEecCCCCeEEEEeCCCcE
Q 014154 305 RSIARHPTLPIIASCGLDSYL 325 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i 325 (430)
.-+.|.+++.+.+.. ++.+
T Consensus 185 r~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 185 KFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEEECTTSCEEEEE--TTEE
T ss_pred EEEEECCCCcEEEEe--CCeE
Confidence 456688888766555 6633
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.56 E-value=1.2 Score=39.42 Aligned_cols=149 Identities=11% Similarity=-0.003 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC----CCEEEEEe--CC
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGT--ND 236 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~--~d 236 (430)
.....|+|.|++.++++--..|.|++++...+........... ..........++| +|+ +.+.++-+ .+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v---~~~g~~GllGia~--~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV---SPSGEGGLLGIAL--SPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC---CCBTTBSEEEEEE--CTTHHHHCEEEEEEECSSS
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce---eecCCCCceeeEe--ccccccCCEEEEEEecCCC
Confidence 4567899999998777665589999998765543211111100 0011245788999 674 43333322 34
Q ss_pred CcEEEEECCCCC-------cceE---EEee-cCCCeEEEEecCCCCEEEEEeC-------------CCcEEEEEccCCe-
Q 014154 237 HQVRLYDTSAQR-------RPVM---SFDF-RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTGK- 291 (430)
Q Consensus 237 g~i~iwd~~~~~-------~~~~---~~~~-~~~~i~~~~~sp~~~~l~~~~~-------------d~~i~iwd~~~~~- 291 (430)
+.|.-|.+.... .... .+.. .......|.|.|||.+.++.+. .|.|.-++....-
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 566666655411 1111 2221 1123467999999976666432 2455555543210
Q ss_pred ------EEeeee-CCCCCCeEEEEecCCCCeEEE
Q 014154 292 ------LLGCFI-GKCSGSIRSIARHPTLPIIAS 318 (430)
Q Consensus 292 ------~~~~~~-~~~~~~v~~i~~~~~~~~l~s 318 (430)
....+. ++ .....++|+|+|.+.++
T Consensus 187 ~~nPf~~~~i~a~G~--RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 187 PGNPFPGSPVYSYGH--RNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp TTCSSTTCCEEEBCC--SBCCEEEECTTCCEEEE
T ss_pred CCCCCCCCeEEeeCC--CCcceEEECCCCCEEEE
Confidence 001122 33 24578999998765544
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.55 E-value=1.2 Score=39.56 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=40.4
Q ss_pred CCeEEEEec-------CCCCEEEEEeCCCcEEEEEccCC-eEE--eeee-CCCCCCeEEEEecCCCCeEEEEe
Q 014154 259 TPIKAVAEE-------PDSFNIYIGNGSGDLASVDIRTG-KLL--GCFI-GKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 259 ~~i~~~~~s-------p~~~~l~~~~~d~~i~iwd~~~~-~~~--~~~~-~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
.....++|. .++.++++....+.|...++... +.. ..+. +. ...+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEe
Confidence 467788883 56777776666778888888743 332 2332 22 45788999999997666553
No 326
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.44 E-value=2 Score=41.48 Aligned_cols=232 Identities=8% Similarity=-0.092 Sum_probs=129.1
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 146 (430)
+|+.+ ....|+..++........+.. +.-....++.+-.... ..+++-...+.+..+++....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~-------~lywtD~~~~~I~r~~~~g~~-- 70 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDVTDN-------RIYWTDISLKTISRAFMNGSA-- 70 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSCS--
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEECCCC-------EEEEEECCCCeEEEEECCCCC--
Confidence 44444 457899999875442221110 0112444555543332 234444455555555432111
Q ss_pred ccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154 147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID 225 (430)
Q Consensus 147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (430)
...+.. ........+++++.+..|+.+ ...+.|.+.+++.......+... ......+++ .|
T Consensus 71 ------~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------l~~P~~iav--dp 132 (628)
T 4a0p_A 71 ------LEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------LDSPRALAL--DP 132 (628)
T ss_dssp ------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------CCCEEEEEE--ET
T ss_pred ------cEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------CCCcccEEE--cc
Confidence 112222 112456788998766655554 45678999998654322212111 144688899 66
Q ss_pred CCCEEEEEe--CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCC
Q 014154 226 DHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG 302 (430)
Q Consensus 226 ~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 302 (430)
....|+.+. ..+.|...++.... ...+-..-.....|++++++..|+.+. ..+.|..+|+..... ..+... ..
T Consensus 133 ~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~ 208 (628)
T 4a0p_A 133 AEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LP 208 (628)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CS
T ss_pred CCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CC
Confidence 444454444 25678888887533 223223345678999999877776665 457899999865433 233332 34
Q ss_pred CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 338 (430)
...++++.. +.++++-...+.|...|..+++....
T Consensus 209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~ 243 (628)
T 4a0p_A 209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTI 243 (628)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEE
Confidence 456788754 34444444578899999777765443
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.42 E-value=0.084 Score=42.93 Aligned_cols=112 Identities=7% Similarity=-0.211 Sum_probs=64.8
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE------EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
..+..++|+|+|.+.++ .+|.++-.+..+... -..+-..--....++.|.|+|.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 47789999998876665 678777777644211 11110000112478899999987776 569898887633
Q ss_pred CceeeEE----EeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 333 RQLLSAV----FLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 333 ~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
...-.-+ .+....=..+..+.|.|+|.+.++. |+.+.-...+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P 162 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP 162 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence 2111100 0111111235889999999994444 7775443333
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.34 E-value=0.42 Score=41.25 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=75.6
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-------CcEE
Q 014154 173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-------HQVR 240 (430)
Q Consensus 173 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~ 240 (430)
++..++.|+.++ .+.+||+.+.+-...-.... . . .....+.+ ++.+++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-R--R----SSVGVGVV----GGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-C--C----BSCEEEEE----TTEEEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-c--c----cCceEEEE----CCEEEEEeCCCCCCCccccEEE
Confidence 456666666543 57888887754332211111 0 0 11122223 56677776542 3588
Q ss_pred EEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEee--eeCCCCCCeEEEEec
Q 014154 241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH 310 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~ 310 (430)
+||+.+.. ...+.. .......+.+ ++.+++.|+.+ ..+.+||+.+.+-... +... ......+.+
T Consensus 177 ~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~- 250 (302)
T 2xn4_A 177 CYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCAV- 250 (302)
T ss_dssp EEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE-
T ss_pred EEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEEE-
Confidence 99988643 222211 1111122222 56677777654 4689999988764322 2111 111122222
Q ss_pred CCCCeEEEEeCCC-----cEEEEECCCCce
Q 014154 311 PTLPIIASCGLDS-----YLRFWDIKTRQL 335 (430)
Q Consensus 311 ~~~~~l~s~~~dg-----~i~iwd~~~~~~ 335 (430)
++.+++.|+.++ .+.+||+.+.+-
T Consensus 251 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 -NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp -TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred -CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 667777777553 488888876543
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.28 E-value=1.9 Score=40.33 Aligned_cols=92 Identities=11% Similarity=-0.016 Sum_probs=60.4
Q ss_pred EEEEECCC----CCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCC------eE-------EeeeeCCC
Q 014154 239 VRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG------KL-------LGCFIGKC 300 (430)
Q Consensus 239 i~iwd~~~----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~------~~-------~~~~~~~~ 300 (430)
|.+.|.+. +...+..+... .....+.++|||+++++++ .+.++.++|++.. +. ..+...
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-- 376 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-- 376 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEES-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--
T ss_pred eeEEccccccccCCceEEEEeCC-CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--
Confidence 55555554 22233333333 3446788999999998776 5788999998742 11 223332
Q ss_pred CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR 333 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~ 333 (430)
.-.....+|.++|.-..|.--|..|.-|++...
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 345678899999955555568999999999753
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.28 E-value=0.52 Score=40.84 Aligned_cols=104 Identities=12% Similarity=0.079 Sum_probs=57.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeE
Q 014154 226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL 292 (430)
Q Consensus 226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~ 292 (430)
++.+++.|+.+ ..+.+||+.+.. ...+.. ......++.+ ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 56777776643 358889988643 222211 1111122222 56677777654 4689999987764
Q ss_pred Eee--eeCCCCCCeEEEEecCCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154 293 LGC--FIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQLL 336 (430)
Q Consensus 293 ~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 336 (430)
... +... ......+.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 197 ~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 197 RMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp EECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred eeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 322 2111 112223333 66777777654 46999999876543
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.16 E-value=2.8 Score=41.53 Aligned_cols=188 Identities=16% Similarity=0.156 Sum_probs=109.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 242 (430)
..|.++....++ .|.+|+.+| +..||..+..... .... ....|.++.. .++ .|..++.+ -|..|
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----~~~~-----~~~~i~~i~~---~~g-~lWigt~~-Gl~~~ 126 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----PETD-----FPTDVRTMAL---QGD-TLWLGALN-GLYTY 126 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----CSCC-----CCSCEEEEEE---ETT-EEEEEETT-EEEEE
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----cccC-----CCceEEEEEe---cCC-cEEEEcCC-cceeE
Confidence 457777766655 566677664 7899987754321 1000 0134666544 244 56666666 67889
Q ss_pred ECCCCCcceEEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee-eeCC---CCCCeEEEEecCCC
Q 014154 243 DTSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGK---CSGSIRSIARHPTL 313 (430)
Q Consensus 243 d~~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~---~~~~v~~i~~~~~~ 313 (430)
|..+.. +..+. .....|.++....++.+. +|+..| |..||..+++.... .... ....|.++...+++
T Consensus 127 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~ 202 (758)
T 3ott_A 127 QLQSRK--LTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR 202 (758)
T ss_dssp ETTTCC--EEEECHHHHCCSCSCEEEEEECTTCCEE-EEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT
T ss_pred eCCCCe--EEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCC
Confidence 987643 33331 123468888887777554 455554 77888877664321 1111 02248888887776
Q ss_pred CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154 314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 314 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
..|..|+. +-|..+|..+++......+ ....|.++....+|.+..++.+ -+.+++..
T Consensus 203 ~~lWigt~-~Gl~~~~~~~~~~~~~~~l---~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~ 259 (758)
T 3ott_A 203 QCVWIGTE-GYLFQYFPSTGQIKQTEAF---HNNSIKSLALDGNGDLLAGTDN-GLYVYHND 259 (758)
T ss_dssp TEEEEEEE-EEEEEEETTTTEEEEEEEE---EEEEEEEEEECTTCCEEEEETT-EEEEECCT
T ss_pred CEEEEEEC-CCCeEEcCCCCeEEeccCC---CCCeEEEEEEcCCCCEEEEeCC-ceeEEecC
Confidence 65555553 4588899877654332111 1334788888888888444443 46666654
No 332
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.03 E-value=1.8 Score=38.44 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=40.9
Q ss_pred CCeEEEEecC-------CCCEEEEEeCCCcEEEEEccCCeEEee--eeCCCCCCeEEEEecCCCCeEEEE
Q 014154 259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 259 ~~i~~~~~sp-------~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
.....+.|.. ++.++++....+.|...++..++.+.. +.......+..+++.|+|.++++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 4567788853 567777766778888888877654332 211113578999999999865543
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.97 E-value=1.2 Score=38.49 Aligned_cols=183 Identities=7% Similarity=-0.012 Sum_probs=90.3
Q ss_pred CCCEEEEEeC----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC----C-----CcE
Q 014154 173 SEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----D-----HQV 239 (430)
Q Consensus 173 ~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d-----g~i 239 (430)
++.+++.|+. -..+.+||..+.+-... ...... ..-.+++. -++.+++.|+. + ..+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~-------r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVP-------RSGLAGCV---VGGLLYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSC-------CBSCEEEE---ETTEEEEECCEEEETTEEEECCCE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcc-------cccceEEE---ECCEEEEECCCcCCCCCCeecceE
Confidence 4566666663 23688999877653322 111100 11112222 15667777665 2 468
Q ss_pred EEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEee--eeCCCCCCeEEEEe
Q 014154 240 RLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIAR 309 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~ 309 (430)
.+||+.+.. ...+.. .......+.+ ++++++.|+.+ ..+.+||+.+.+-... +... ......+.+
T Consensus 93 ~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~ 167 (308)
T 1zgk_A 93 DCYNPMTNQ--WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVL 167 (308)
T ss_dssp EEEETTTTE--EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE
T ss_pred EEECCCCCe--EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEEEEE
Confidence 889988643 222211 1111222222 56666776643 4688999987764322 2211 112223333
Q ss_pred cCCCCeEEEEeCC-----CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC-----CceEecCCCC
Q 014154 310 HPTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND 376 (430)
Q Consensus 310 ~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d-----~~i~~~~~~~ 376 (430)
++.+++.|+.+ ..+.+||+.+.+-...-.+... ......+.+ ++++ +.++.+ ..+.+||...
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC
Confidence 66677777654 4588999887654322111111 111111222 5555 777654 3466666544
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.88 E-value=1.1 Score=39.66 Aligned_cols=149 Identities=10% Similarity=-0.002 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC----CCEEEEEeC---
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGTN--- 235 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~--- 235 (430)
.....|+|.|+++.|+++...|.|++++.. +.....+.... . ...........+++ +|+ +.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~-~-v~~~g~~g~~gia~--~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP-D-VWAHGQGGLLDVVL--APDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC-C-CCCSTTCSEEEEEE--CTTHHHHCEEEEEEEEECS
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc-c-cccCCCCCceeEEE--CCCCCCCCEEEEEEeCCCC
Confidence 346789999999844456678999999853 33211111100 0 00001134678899 774 444444322
Q ss_pred ----CCcEEEEECCCCC----cceEEEeec------CCCeEEEEecCCCCEEEEEeC-------------CCcEEEEEcc
Q 014154 236 ----DHQVRLYDTSAQR----RPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIR 288 (430)
Q Consensus 236 ----dg~i~iwd~~~~~----~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~-------------d~~i~iwd~~ 288 (430)
...|..|++.... .....+..- ......|+|.|||.+.++-+. .|.|.-+|..
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 2356667665321 111112110 112357999999955554332 1456666764
Q ss_pred CCe------------EEeeee-CCCCCCeEEEEecC-CCCeEEE
Q 014154 289 TGK------------LLGCFI-GKCSGSIRSIARHP-TLPIIAS 318 (430)
Q Consensus 289 ~~~------------~~~~~~-~~~~~~v~~i~~~~-~~~~l~s 318 (430)
..- ....+. ++ .....++|+| ++.++++
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G~--rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYGI--RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEECC--SEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCcCCCCCCccEEEEcC--cCccceEEECCCCCEEEE
Confidence 220 111122 32 3468899999 5554433
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.84 E-value=0.91 Score=39.41 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=57.3
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCCcceEEEee-cCCCe-EEEEecCCCCEEEEEeC-C-----CcEEEEEccC
Q 014154 226 DHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDF-RETPI-KAVAEEPDSFNIYIGNG-S-----GDLASVDIRT 289 (430)
Q Consensus 226 ~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~-~~~~i-~~~~~sp~~~~l~~~~~-d-----~~i~iwd~~~ 289 (430)
++.+++.|+.+ ..+.+||+.+.. ...+.. ..... .+++. .++++++.|+. + ..+.+||+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 56677777632 358899988642 222211 11111 12222 35667777765 2 4689999987
Q ss_pred CeEEee--eeCCCCCCeEEEEecCCCCeEEEEeCCC-----cEEEEECCCCcee
Q 014154 290 GKLLGC--FIGKCSGSIRSIARHPTLPIIASCGLDS-----YLRFWDIKTRQLL 336 (430)
Q Consensus 290 ~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 336 (430)
.+-... +... ......+.+ ++.+++.|+.++ .+.+||+.+.+-.
T Consensus 175 ~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 175 FEWKELAPMQTA-RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp TEEEECCCCSSC-CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred CeEEECCCCCCc-hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 754322 2111 111222333 667778887654 5889999876543
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.47 E-value=2.2 Score=36.98 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=56.3
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCCcceEEEeecCCCe--EEEEecCCCCEEEEEeC------CCcEEEEEccCC
Q 014154 226 DHRKFVAGTND-------HQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNG------SGDLASVDIRTG 290 (430)
Q Consensus 226 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~i--~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~ 290 (430)
++.+++.|+.+ ..+.+||+.+.. ...+.....+. .+++. .++.+++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 56777777754 357888988643 22221111111 11222 35666666653 245899999887
Q ss_pred eEEee--eeCCCCCCeEEEEecCCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154 291 KLLGC--FIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQLL 336 (430)
Q Consensus 291 ~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 336 (430)
+-... +... ......+.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 186 ~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 186 DWKDLAPMKTP-RSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEEECCCSSC-CBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEEECCCCCCC-cccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 64322 2211 111222333 66777777644 35778998876543
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.40 E-value=2.3 Score=36.78 Aligned_cols=139 Identities=4% Similarity=-0.090 Sum_probs=80.2
Q ss_pred EEcCCCCEEEEEeCC--------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154 169 KVDISEKFSLFGGKG--------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234 (430)
Q Consensus 169 ~~~~~~~~l~~~~~d--------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 234 (430)
-+++++.+|+..... ..|+..+++..+....... .+..| +++++.|+-..
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~--s~~g~~Iy~~~ 122 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--------------PCIYA--SLIGNYIYYLH 122 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--------------CEEEE--EEETTEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--------------CccEE--EEeCCEEEEEe
Confidence 346677777766543 3577777766543222111 12245 55778777765
Q ss_pred ----CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154 235 ----NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR 309 (430)
Q Consensus 235 ----~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~ 309 (430)
....|..-++.... ...+..+.. ..++|+++.|+-.+. ...|...++..+.....+.+ ... ..+
T Consensus 123 ~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~ 191 (302)
T 3s25_A 123 YDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPV 191 (302)
T ss_dssp ESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEE
T ss_pred ecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-cee
Confidence 23456566665422 344544432 457788888876654 57888888876665433332 222 345
Q ss_pred cCCCCeEEEEeCC--CcEEEEECCCCc
Q 014154 310 HPTLPIIASCGLD--SYLRFWDIKTRQ 334 (430)
Q Consensus 310 ~~~~~~l~s~~~d--g~i~iwd~~~~~ 334 (430)
+|++.+|+-...+ ..|..-++....
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred eecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 6989888776544 356666665444
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.13 E-value=1 Score=39.12 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=74.2
Q ss_pred CCCEEEEEeCC--------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-C-----Cc
Q 014154 173 SEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D-----HQ 238 (430)
Q Consensus 173 ~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-----g~ 238 (430)
++..++.|+.+ ..+.+||+.+.+-... ...... . .....+.+ ++.+++.|+. + ..
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYV--V----YGHTVLSH----MDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSC--C----BSCEEEEE----TTEEEEECCBCTTSCBCCC
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCc--c----cceeEEEE----CCEEEEEeCCCCCCcccce
Confidence 45555566532 4588999887642211 111100 0 11122223 5667777775 2 46
Q ss_pred EEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCC-----cEEEEEccCCeEEee--eeCCCCCCeEEEE
Q 014154 239 VRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGC--FIGKCSGSIRSIA 308 (430)
Q Consensus 239 i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~--~~~~~~~~v~~i~ 308 (430)
+.+||+.+.. ...+.. ......++.+ ++++++.|+.++ .+.+||+.+.+-... +... ......+.
T Consensus 167 ~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~ 241 (315)
T 4asc_A 167 MCVYDPKKFE--WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS 241 (315)
T ss_dssp EEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred EEEEeCCCCe--EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE
Confidence 8899988642 222221 1111122222 567777777654 588999988754322 2111 11222333
Q ss_pred ecCCCCeEEEEeCCC--------------cEEEEECCCCce
Q 014154 309 RHPTLPIIASCGLDS--------------YLRFWDIKTRQL 335 (430)
Q Consensus 309 ~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~ 335 (430)
+ ++.+++.|+.++ .+.+||+.+.+-
T Consensus 242 ~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 242 L--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp E--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred E--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 3 567777777542 366778776543
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.88 E-value=5.6 Score=39.41 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=111.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154 163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240 (430)
Q Consensus 163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 240 (430)
..|.++....++.+.+ |+.+ -+..++..++. ....+..... ...+ ....|.++.- ..++.+ ..|+ ++-|.
T Consensus 324 ~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~-~~~l-~~~~v~~i~~--d~~g~l-Wigt-~~GL~ 395 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIWYRMGDK-TYPL-SHNRIRHIYE--DKEQQL-WIAT-DGSIN 395 (758)
T ss_dssp CBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEEECTTCS-SSCC-SCSCEEEEEE--CTTSCE-EEEE-TTEEE
T ss_pred ceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEEeccCCc-CCCC-CCCceEEEEE--CCCCCE-EEEe-CCcHh
Confidence 4688888887776655 5555 46667665432 1111211100 0011 1245777766 566654 4456 45788
Q ss_pred EEECCCCCcceEEEe--e-----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC------CeEE--eeee---CCCCC
Q 014154 241 LYDTSAQRRPVMSFD--F-----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLL--GCFI---GKCSG 302 (430)
Q Consensus 241 iwd~~~~~~~~~~~~--~-----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~------~~~~--~~~~---~~~~~ 302 (430)
.||..++. ...+. . ....|.++...+++ .|..|+..+-|.++|..+ .... ..+. +-...
T Consensus 396 ~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 396 RYDYATRQ--FIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp EEETTTTE--EEEEEEECCC--CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred hcCcCCCc--EEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 99988743 22222 1 12357888777666 566677666688888653 1111 1111 11123
Q ss_pred CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc-ccceEEeeeccccccccccCCCCceEecCCC
Q 014154 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH-LNEVVFDSAFADKEVANAAADAPMLEIQNGN 375 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~ 375 (430)
.|.++...++|.+.+.++..+-|..+|..+++.... ..... ....+.++....+|.+-.++..| +..|+..
T Consensus 473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~-~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~ 544 (758)
T 3ott_A 473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL-FADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPK 544 (758)
T ss_dssp CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE-CTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC-
T ss_pred eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe-cCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecC
Confidence 589999988888665334444588899887654432 11111 12346777788888884344444 6666643
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.72 E-value=1.6 Score=37.89 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=73.6
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC------CCcE
Q 014154 173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQV 239 (430)
Q Consensus 173 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i 239 (430)
++..++.|+.+ ..+.+||+.+.+-........ . ..-.+++. .++.+++.|+. -..+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~-------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-K-------VYGHNVIS---HNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-C-------EESCEEEE---ETTEEEEECCEESSSCBCCCE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-c-------ccccEEEE---ECCEEEEEcCCCCCCCccceE
Confidence 45566666653 357888887754332211110 0 01111222 25667777764 2358
Q ss_pred EEEECCCCCcceEEEeec---CCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEe--eeeCCCCCCeEEEEe
Q 014154 240 RLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIAR 309 (430)
Q Consensus 240 ~iwd~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~ 309 (430)
.+||+.+.. ...+... .....++.+ ++++++.|+.+ ..+.+||+.+.+-.. .+... ......+.+
T Consensus 178 ~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~ 252 (318)
T 2woz_A 178 FIYNPKKGD--WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSSISLVSL 252 (318)
T ss_dssp EEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBSCEEEEE
T ss_pred EEEcCCCCE--EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccceEEEEE
Confidence 899998743 2222211 111122222 56677777643 357789988765432 22211 111222333
Q ss_pred cCCCCeEEEEeCC--------------CcEEEEECCCCcee
Q 014154 310 HPTLPIIASCGLD--------------SYLRFWDIKTRQLL 336 (430)
Q Consensus 310 ~~~~~~l~s~~~d--------------g~i~iwd~~~~~~~ 336 (430)
++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 253 --~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 253 --AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp --TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred --CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 56677777654 34778888765443
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.54 E-value=1.9 Score=38.06 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=31.1
Q ss_pred cEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC------cEEEEECCCCceeeEEEeecc
Q 014154 281 DLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDS------YLRFWDIKTRQLLSAVFLKQH 344 (430)
Q Consensus 281 ~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~ 344 (430)
.+.+||+.+.+- +..+... ...-.++. .++.+++.|+.++ .|.++++++++.+....+.+|
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-----
T ss_pred eEEEEecCCCceeeCCCCCCC-cccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccccc
Confidence 578899886543 3333322 22222333 3677888888653 366678888887776544443
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.42 E-value=3.2 Score=36.65 Aligned_cols=144 Identities=15% Similarity=0.019 Sum_probs=71.2
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-C---------CcEEE
Q 014154 173 SEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D---------HQVRL 241 (430)
Q Consensus 173 ~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d---------g~i~i 241 (430)
++.+++.|+. ...+.+||+.+....+........... .....+.+ ++.+++.|+. + ..+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R----~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~v~~ 90 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR----DQATSAFI----DGNLYVFGGIGKNSEGLTQVFNDVHK 90 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC----BSCEEEEE----TTEEEEECCEEECTTSCEEECCCEEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC----ccceEEEE----CCEEEEEcCCCCCCCccceeeccEEE
Confidence 4455555543 346888998742223332221110000 11122223 5667777765 2 46889
Q ss_pred EECCCCCcceEEEeec--C--CCeEEEEecCCCCEEEEEeCC--------------------------------------
Q 014154 242 YDTSAQRRPVMSFDFR--E--TPIKAVAEEPDSFNIYIGNGS-------------------------------------- 279 (430)
Q Consensus 242 wd~~~~~~~~~~~~~~--~--~~i~~~~~sp~~~~l~~~~~d-------------------------------------- 279 (430)
||+.+.. ...+... . ....++. .++++++.|+.+
T Consensus 91 yd~~~~~--W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 2uvk_A 91 YNPKTNS--WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF 166 (357)
T ss_dssp EETTTTE--EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCC
T ss_pred EeCCCCc--EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCC
Confidence 9988743 2222111 1 1122222 467777888754
Q ss_pred -CcEEEEEccCCeEEe--eeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEEC
Q 014154 280 -GDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDI 330 (430)
Q Consensus 280 -~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd~ 330 (430)
..+.+||+.+.+-.. .+... ...-.+++.. ++.+++.|+. ...+.+||+
T Consensus 167 ~~~v~~yd~~~~~W~~~~~~p~~-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 167 NKFLLSFDPSTQQWSYAGESPWY-GTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CCEEEEEETTTTEEEEEEECSSC-CCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred cccEEEEeCCCCcEEECCCCCCC-CcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 578999998776432 22211 1110222222 5666677653 235777876
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.26 E-value=6.6 Score=33.80 Aligned_cols=101 Identities=10% Similarity=-0.008 Sum_probs=61.1
Q ss_pred cCCCCEEEEEeCC--------------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe----CCCcEEEE
Q 014154 224 IDDHRKFVAGTND--------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN----GSGDLASV 285 (430)
Q Consensus 224 ~~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~----~d~~i~iw 285 (430)
++++..|+.+... ..|+..++..... ..+.. .. +..|++++++|+-.. ....|+..
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 5677877776543 3677777776442 23322 22 236778888888765 33456666
Q ss_pred EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC-CCcEEEEECCCCcee
Q 014154 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLL 336 (430)
Q Consensus 286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~ 336 (430)
++.. .....+..+ .. ..|+|+++.|+-.+. ...|++-++..+...
T Consensus 135 ~~dG-s~~~~lt~~-~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 135 RIDG-EEKKKIKNH-YL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp ETTS-CCCEEEESS-CC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred ECCC-CCeEEEeCC-Cc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 6653 333445443 22 456778888876665 567888888765533
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.23 E-value=7.4 Score=34.26 Aligned_cols=242 Identities=12% Similarity=0.127 Sum_probs=117.7
Q ss_pred eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCC
Q 014154 55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKG 133 (430)
Q Consensus 55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g 133 (430)
..+.+ .|+|.++++-...|.|.+++..+++. ..+..+ +..+.........+.+.+.-..+ +.+... +...
T Consensus 35 ~~ia~--~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~-~~v~~~g~~GllGia~~Pdf~~~-----g~lYv~yt~~~ 105 (347)
T 3das_A 35 WGLAP--LPGGDLLVSSRDEATITRVDAKTGRK-TELGEV-PGVSPSGEGGLLGIALSPDYASD-----HMVYAYFTSAS 105 (347)
T ss_dssp EEEEE--CTTSCEEEEETTTCEEEEECTTTCCE-EEEEEC-TTCCCBTTBSEEEEEECTTHHHH-----CEEEEEEECSS
T ss_pred eEEEE--cCCCcEEEEEecCCEEEEEECCCCcE-eeeccc-CceeecCCCCceeeEeccccccC-----CEEEEEEecCC
Confidence 34555 77888666665589999998755543 222211 11122334566777776531111 344332 2222
Q ss_pred eeEEEEeeecCcc-c-cCCCcceEEee-ec--CCCceEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC-
Q 014154 134 KASMRSIEVTKVS-A-ESSCSTVKSWN-VC--ASGTIAFSKVDISEKFSLFGGK-------------GVEVNVWDLDKC- 194 (430)
Q Consensus 134 ~~~v~~~~~~~~~-~-~~~~~~i~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~- 194 (430)
..+|..+...... . ......-.++. +. .......|.|.|++.+.++.+. .|.|.-++.+..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 3355555433210 0 01111222222 21 1223456999999987776543 244444444321
Q ss_pred --------eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCC--cEEEEECC--------C-------CC
Q 014154 195 --------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH--QVRLYDTS--------A-------QR 248 (430)
Q Consensus 195 --------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~--------~-------~~ 248 (430)
..++.. ++ .....++| +|++.+.++-. .++ .|.+...- . ..
T Consensus 186 p~~nPf~~~~i~a~--------G~---RNp~Gla~--dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 186 APGNPFPGSPVYSY--------GH---RNVQGLAW--DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp CTTCSSTTCCEEEB--------CC---SBCCEEEE--CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred cCCCCCCCCeEEee--------CC---CCcceEEE--CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 001111 00 23567788 67776655432 222 23222110 0 01
Q ss_pred cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE----EeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCG 320 (430)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~ 320 (430)
.|+..+..+......++|. ++..++..-..+.|....+..... ...+.+. ...+..|+..|||.++++..
T Consensus 253 ~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred CCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence 2344443332456777776 455555555566777777765442 2223333 46789999999997655543
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.58 E-value=14 Score=36.24 Aligned_cols=155 Identities=8% Similarity=0.071 Sum_probs=82.1
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCeeeEee-CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEE
Q 014154 172 ISEKFSLFGGKG----VEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVR 240 (430)
Q Consensus 172 ~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~ 240 (430)
.++..++.|+.+ ..+.+||..+.+-.... ..... .+..+-.-.+++.. ..++.+++.|+.++ .+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~---~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS---EVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS---CCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC---CCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEE
Confidence 456677777753 46888998776433222 10000 00000111222331 22677777777543 578
Q ss_pred EEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCC--cEEEEEccCCeEEeee-----eCCCCCCeEEEEec
Q 014154 241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGCF-----IGKCSGSIRSIARH 310 (430)
Q Consensus 241 iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~~~~~-----~~~~~~~v~~i~~~ 310 (430)
+||+.+.. ...+.. .... .+++.-.++.+++.|+.++ .+.+||..+.+-...- ... .....++.+.
T Consensus 472 ~yd~~t~~--W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-r~~~~a~v~~ 547 (695)
T 2zwa_A 472 IFDMKTRE--WSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-SLVSAGLEFD 547 (695)
T ss_dssp EEETTTTE--EEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-CCBSCEEEEE
T ss_pred EEeCCCCc--EEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-ccceeEEEEe
Confidence 89988732 122211 1111 2233323777888887654 6999999887643221 111 2222345555
Q ss_pred CC-CCeEEEEeC--C-----CcEEEEECCCCc
Q 014154 311 PT-LPIIASCGL--D-----SYLRFWDIKTRQ 334 (430)
Q Consensus 311 ~~-~~~l~s~~~--d-----g~i~iwd~~~~~ 334 (430)
.+ +.+++.||. + ..+.+||+.+..
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 55 667777765 2 358899998776
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.90 E-value=13 Score=34.97 Aligned_cols=102 Identities=5% Similarity=-0.126 Sum_probs=67.6
Q ss_pred cceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCC-----------Ccc-eEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154 214 TWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQ-----------RRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280 (430)
Q Consensus 214 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~-----------~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~ 280 (430)
.....+.+ +|||.+++.++ .+.++.++|+... +.. +.... -.......+|.++|+...+-.-|.
T Consensus 323 ksPHGv~v--sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNT--SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTT
T ss_pred CCCcceee--CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecc
Confidence 34556666 89999888766 5778999998731 111 11222 234567789999995555666899
Q ss_pred cEEEEEccCC----------eEEeeeeCCCCCCeEEEEe------cCCCCeEEEEe
Q 014154 281 DLASVDIRTG----------KLLGCFIGKCSGSIRSIAR------HPTLPIIASCG 320 (430)
Q Consensus 281 ~i~iwd~~~~----------~~~~~~~~~~~~~v~~i~~------~~~~~~l~s~~ 320 (430)
.|..|++... ..+..+..| - .+-.+.- .|+|++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~-Y-qpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVH-Y-QPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECS-S-CEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccc-c-CCcccccCCCccCCCCccEEEEec
Confidence 9999998753 456666665 2 2333333 57899999884
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.18 E-value=4.8 Score=39.46 Aligned_cols=151 Identities=12% Similarity=0.096 Sum_probs=80.8
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--cEEEEEC
Q 014154 173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDT 244 (430)
Q Consensus 173 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~ 244 (430)
++..++.|+.+ +.+.+||+.+..-... .... .+-.-.+++. -.++.+++.|+.++ .+.+||+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~--~~~p------~~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI--KSLS------HTRFRHSACS--LPDGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC--CCCS------BCCBSCEEEE--CTTSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC--CCCC------CCcccceEEE--EcCCEEEEECCCCCCCCEEEEEC
Confidence 56667777643 3578888877532221 1100 0011122222 13778888887655 6899999
Q ss_pred CCCCcceEEEee------cCCCeEEEEecCC-CCEEEEEeC--C-----CcEEEEEccCCe------EE--eeeeCCCCC
Q 014154 245 SAQRRPVMSFDF------RETPIKAVAEEPD-SFNIYIGNG--S-----GDLASVDIRTGK------LL--GCFIGKCSG 302 (430)
Q Consensus 245 ~~~~~~~~~~~~------~~~~i~~~~~sp~-~~~l~~~~~--d-----~~i~iwd~~~~~------~~--~~~~~~~~~ 302 (430)
.+.. ...+.. ......++.+..+ +..++.|+. + +.+.+||+.+.+ -. .........
T Consensus 521 ~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~ 598 (695)
T 2zwa_A 521 TEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY 598 (695)
T ss_dssp TTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB
T ss_pred CCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc
Confidence 8743 222221 1122233555555 666777765 2 458899998876 21 111111011
Q ss_pred CeEEEEecCCCCeEEEEeC--------CCcEEEEECCCCcee
Q 014154 303 SIRSIARHPTLPIIASCGL--------DSYLRFWDIKTRQLL 336 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~--------dg~i~iwd~~~~~~~ 336 (430)
....+.+ .++.+++.||. ...|.+||+.+.+-.
T Consensus 599 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 599 GSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp SCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred cceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 2223333 33677777774 346999999876544
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.98 E-value=14 Score=33.98 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=57.6
Q ss_pred eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCC-CCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154 54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK 132 (430)
Q Consensus 54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (430)
..++.+ .|+|+++++-...+.|.+++..++... .+..+...... .....+..+.+.+.-..+ +.+..+...
T Consensus 29 P~~~a~--~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-----g~lYv~~s~ 100 (454)
T 1cru_A 29 PHALLW--GPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNN-----PYIYISGTF 100 (454)
T ss_dssp EEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTS-----CEEEEEEEE
T ss_pred ceEEEE--cCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccccccCCCCceeEEEECCCcCcC-----CEEEEEEec
Confidence 345666 788886666544457888876555432 22221111111 134567777776531111 344433321
Q ss_pred -----------CeeEEEEeeecCccccCCCcceEEee-ec--CCCceEEEEEcCCCCEEEEEeC
Q 014154 133 -----------GKASMRSIEVTKVSAESSCSTVKSWN-VC--ASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 133 -----------g~~~v~~~~~~~~~~~~~~~~i~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
....|+.+........ .+....++. +. .......|+|.|++.+.++.+.
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~-~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDT-LEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTE-EEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccCCCccccccccEEEEEEECCCCCC-cCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1345555554321000 011112232 11 1234688999999987776543
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=87.56 E-value=16 Score=33.71 Aligned_cols=106 Identities=9% Similarity=0.053 Sum_probs=60.5
Q ss_pred ceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCC--cceEEEe---------ecCCCeEEEEecCC---CCEEEEE-eC
Q 014154 215 WFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR--RPVMSFD---------FRETPIKAVAEEPD---SFNIYIG-NG 278 (430)
Q Consensus 215 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~---------~~~~~i~~~~~sp~---~~~l~~~-~~ 278 (430)
....|+| .|++. .|+++...|.|++++..... .++..+. ..+.....|+|+|+ ..+|++. +.
T Consensus 15 ~P~~~a~--~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALH--SGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEEC--CSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CceEEEE--CCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3678888 78885 45556789999999754321 1222221 11356789999996 2344433 21
Q ss_pred --C----------CcEEEEEccC----------CeEEeeee-CCCCCCeEEEEecCCCCeEEEEeCC
Q 014154 279 --S----------GDLASVDIRT----------GKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLD 322 (430)
Q Consensus 279 --d----------~~i~iwd~~~----------~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~d 322 (430)
+ ..|.-|.+.. .+.+..+. .........|.|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455532 23333333 1112346889999999877766543
No 350
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=87.33 E-value=13 Score=31.93 Aligned_cols=212 Identities=9% Similarity=0.041 Sum_probs=105.8
Q ss_pred CCCceeEEeecCCeEEEecCCCCcccce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 63 QNDPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
|+.+++++.+.+|.|+--.+.+.+.... -.+..... ....+.+..+...+... .++..+..|.+.-..+.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-~ke~D~l~~~~~~~~~~--------~ll~fT~~G~~~~~~~~ 71 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR-IKEEDFIDRLLVANTHD--------HILCFSSRGRVYSMKVY 71 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--------EEEEEETTSEEEEEEGG
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeee-eCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEhh
Confidence 3456788899999998776654332111 00100000 01234554444444433 66667777766555544
Q ss_pred ecCccccCCCcc--eEEeeecCCCceEEEEEc---CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcce
Q 014154 142 VTKVSAESSCST--VKSWNVCASGTIAFSKVD---ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 142 ~~~~~~~~~~~~--i~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
.-|.......|. +.+..+..+..|..+..- .++.+++..+..|.++...+........ .+ .....+...+.+
T Consensus 72 elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-~G--~~~i~l~~~d~l 148 (307)
T 1zi0_A 72 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-AG--KVAIKLVDGDEL 148 (307)
T ss_dssp GSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT-TC--EESSCCCTTCCE
T ss_pred HCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc-CC--eEEEEECCCCEE
Confidence 333322112221 112233445556655432 3566888999999999987753211100 00 000011111344
Q ss_pred eEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------ceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
..+.. ......|+..+.+|.+..+....-.. -+..+.. ....|.++...+++..|++.+..|.++-.++.
T Consensus 149 v~~~~--~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 149 IGVDL--TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEEEE--eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 44444 23345677778899888887643110 0111111 23456666555555678888999998888764
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.69 E-value=19 Score=30.47 Aligned_cols=184 Identities=9% Similarity=-0.059 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
.|..++.... ..++. . ||.|+.|-......+-. + ..+ ...|..++. .. ...+.-. +|.|+.|-
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~---P----~~~--~~~v~~ia~--G~--~hs~al~-~G~v~~wG 126 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV---P----AEA--RSGVDAIAA--GA--WASYALK-DGKVIAWG 126 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC---C----GGG--SSSEEEEEE--ET--TEEEEEE-TTEEEEEE
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC---C----ccc--CCCeEEEEC--cC--CEEEEEe-CCeEEEec
Confidence 4555555422 23333 4 88999987654222110 0 000 134666666 32 2333335 99999998
Q ss_pred CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
.....+.-. .......|..++.... +.+.-. ||.|+.|-....-.+..-... ...|..|+.-.... ++. .||
T Consensus 127 ~n~~gqlg~-~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~-~~~v~~i~~G~~hs-~al--~~G 198 (282)
T 3qhy_B 127 DDSDGQTTV-PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEA-QSGVDDVAGGIFHS-LAL--KDG 198 (282)
T ss_dssp CCTTSTTSC-CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGG-GSSEEEEEECSSEE-EEE--ETT
T ss_pred CCCCCcCCC-CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceec-CCCeEEEEecCCEE-EEE--ECC
Confidence 765322110 0112245777765433 233333 789999876542222111111 34677777654433 333 599
Q ss_pred cEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT 377 (430)
Q Consensus 324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~ 377 (430)
.|+.|-......+.. +......|..++-..+..++. . |+.+..|-.+..
T Consensus 199 ~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~h~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 199 KVIAWGDNRYKQTTV---PTEALSGVSAIASGEWYSLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp EEEEEECCTTSTTCC---CGGGGSSCCEEEECSSCEEEE-E-TTEEEEESTTCC
T ss_pred eEEEEECCCCCCCCC---CcccCCCceEEEcCCCEEEEE-E-CCEEEEecCCCC
Confidence 999997654322221 111112244555443333333 3 899999987763
No 352
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=82.74 E-value=23 Score=30.59 Aligned_cols=213 Identities=13% Similarity=0.115 Sum_probs=109.2
Q ss_pred CCCceeEEeecCCeEEEecCCCCcccce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154 63 QNDPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE 141 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~ 141 (430)
|+.+++++.+.+|.|+--.+...+.... -.+..... ...++.+..+...+... .++..+..|.+.-....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-lke~D~l~~~~~~~~~~--------~ll~~T~~G~~~~~~~~ 76 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFD-LNDGDEIVIALCVNTHD--------YLFMISNEGKLYLINAY 76 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCC-CCTTCCEEEEEEEETTC--------EEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecc-cCCCCEEEEEEEECCCC--------EEEEEECCCeEEEEEHH
Confidence 3456788899999999886644332211 00110111 12335565555544433 67777777776666544
Q ss_pred ecCccccCCCcc--eEEeeecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcce
Q 014154 142 VTKVSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF 216 (430)
Q Consensus 142 ~~~~~~~~~~~~--i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v 216 (430)
.-|...-...|. .....+..+..|..+...+ +..+|+..+..|.++...+....... ........+...+.+
T Consensus 77 ~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r---~~G~~~i~L~~~d~l 153 (312)
T 1suu_A 77 EIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK---SRGVIVIKLNDKDFV 153 (312)
T ss_dssp GSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCE
T ss_pred HCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC---CCcEEEEecCCCCEE
Confidence 322211001110 0112233344555554332 46788889999999988875321111 000000111112445
Q ss_pred eEEEEeecCCCCEEEEEeCCCcEEEEECCCC----C--cceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154 217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~--~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 289 (430)
..+.. ......++..+.+|.+..+....- + .=+..+.. ....|.++..-.++..|++.+..|.....++..
T Consensus 154 v~~~~--~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 154 TSAEI--VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEE--eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 55555 233556778899999988876531 1 01111221 134566665545566788888999999888754
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.55 E-value=12 Score=38.06 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.9
Q ss_pred CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
..+.+++..++..++++-+.|+.+|||++.+++++.+..+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567778888889999999999999999999998877543
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=81.98 E-value=5.1 Score=38.14 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=44.4
Q ss_pred eEEEEecCCCCEEEEEeCC------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 261 IKAVAEEPDSFNIYIGNGS------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 261 i~~~~~sp~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
.-.|+|+|.|++++.-..+ +.+.+.+..++++..-+.+...+.++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4678999999866654322 3466677778888777777657899999999999887765
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=81.29 E-value=24 Score=29.87 Aligned_cols=183 Identities=10% Similarity=-0.010 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154 164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD 243 (430)
Q Consensus 164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 243 (430)
.|..++... .+.+.-. ||.|+.|-......+-. +. .....|..++. .. ...++. . ||.|..|-
T Consensus 25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~---p~------~~~~~i~~ia~--G~-~hs~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTM---PA------ATQSGVDAIAA--GN-YHSLAL-K-DGEVIAWG 87 (282)
T ss_dssp SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSC---CG------GGGSCCCEEEE--CS-SEEEEE-E-TTEEEEEE
T ss_pred CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCC---Cc------cCCCCEEEEEe--CC-CEEEEE-E-CCEEEEee
Confidence 455555543 2323335 89999997654222110 00 01134666666 32 233444 4 99999998
Q ss_pred CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154 244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS 323 (430)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 323 (430)
.....+.-. -..-...|..|+.... +.+.-. +|.|+.|-....-.+...... ...|..++......+ + -. ||
T Consensus 88 ~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~-~~~i~~i~~G~~~~~-~-l~-~G 159 (282)
T 3qhy_B 88 GNEDGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEA-QSGVTALDGGVYTAL-A-VK-NG 159 (282)
T ss_dssp CCTTSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGG-GSSEEEEEECSSEEE-E-EE-TT
T ss_pred CCCCCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccC-CCCeEEEEcccCEEE-E-EE-CC
Confidence 765322110 0001246777776544 344445 999999976542221111111 346777776444322 2 23 79
Q ss_pred cEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
.|+.|-......+.. +......+..++...+..++. .||.|..|-.+.
T Consensus 160 ~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~ 207 (282)
T 3qhy_B 160 GVIAWGDNYFGQTTV---PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR 207 (282)
T ss_dssp EEEEEECCTTSTTSC---CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred EEEEecCCCCCCCCC---ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence 999997654322221 111123356666555444443 589999997765
No 356
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=79.25 E-value=31 Score=29.92 Aligned_cols=210 Identities=11% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154 63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV 142 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~ 142 (430)
|+.+++++.+.+|.|+--.+...+.... .... ....+.+..+...+... .++..+..|.+.-..+..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~----~~~~-lke~D~l~~~~~~~t~d--------~ll~fT~~Gr~~~~~~~e 69 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNG----QDFA-MKDTDRLLAMLEMNTKD--------VLLLFTNKGNYLYCPVHE 69 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTT----CCCC-CCTTCCEEEEEEEETTS--------EEEEEETTSEEEEEEGGG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCc----cccc-cCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEHHH
Confidence 4566788899999998776542211000 0000 12335665555444433 666677777665555433
Q ss_pred cCccccCCCcc--eEEeeecCCCceEEE-EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCccee
Q 014154 143 TKVSAESSCST--VKSWNVCASGTIAFS-KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 143 ~~~~~~~~~~~--i~~~~~~~~~~i~~~-~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
-|.......|. .....+..+..|..+ .+.. ++.+++..+.+|.++...+........ ........+...+.+.
T Consensus 70 lp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv 147 (323)
T 1wp5_A 70 LPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVV 147 (323)
T ss_dssp SCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEE
T ss_pred CcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEE
Confidence 33221111121 112233444555554 3332 366889999999999988753221110 0000000111113444
Q ss_pred EEEEeecCCCCEEEEEeCCCcEEEEECCCC----C--cceEEEee-cCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccC
Q 014154 218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRT 289 (430)
Q Consensus 218 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~--~~~~~~~~-~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~ 289 (430)
.+.. ......|+..+.+|.+..+....- + .-+..+.. ....|.++..-+++. .|++.+..|..+..++..
T Consensus 148 ~~~~--~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 148 DVHL--TDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEE--ECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEE--eCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 4444 234556777789999888876431 1 01121221 124466654434444 788888888888877653
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.21 E-value=31 Score=29.95 Aligned_cols=175 Identities=8% Similarity=0.056 Sum_probs=96.0
Q ss_pred CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC
Q 014154 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK 182 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 182 (430)
...|.++...+....+ ..++..+..|.+....+..-.... . .-+....+..+..+..+........|+..+.
T Consensus 94 ~e~i~~~~~~~~~~~e-----~~~v~~T~~G~iKr~~l~~~~~~~--r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~ 165 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDA-----PYLVLATRNGLVKKSKLTDFDSNR--S-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSA 165 (327)
T ss_dssp TCCEEEEEEESSTTSS-----SEEEEEETTSEEEEEEGGGGCCCC--S-SCEESCBCCTTCCEEEEEEECTTCEEEEEET
T ss_pred CCEEEEEEEeccCCCC-----CEEEEEcCCCEEEEeEHHHhhccc--c-CceEEEEECCCCEEEEEEEecCCCEEEEEEC
Confidence 4567666555431111 589999999999988865432100 1 1222333334555666555556677888899
Q ss_pred CCeEEEEECC--CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC------cceEEE
Q 014154 183 GVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSF 254 (430)
Q Consensus 183 d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~ 254 (430)
.|.+..+... .-..... .........+.....|.++.. -+.+..|+..+..|.++.-.+.... .-+..+
T Consensus 166 ~G~~~rf~~~~~eip~~gr-~a~Gv~~i~L~~~d~Vv~~~~--~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 166 NGQSIRFSATDEALRPMGR-ATSGVQGMRFNIDDRLLSLNV--VREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp TSEEEEEECCTTTSCCCCT-TSBCEESSCCCTTCCEEEEEE--CCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred CCeEEEEECcccccCcCCc-CCCCeeeecCCCCCEEEEEEE--ECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 9999888876 3211100 000000111222355666665 3455688888999999887764321 112222
Q ss_pred eec--CCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 255 DFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 255 ~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
... ...+..+....+...++..+.+|.+.-++..
T Consensus 243 ~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 211 2344444444444566667778877777664
No 358
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.33 E-value=69 Score=33.44 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=31.1
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154 261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455666788899999999999999999999987754
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.93 E-value=64 Score=32.87 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=33.0
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 297 (430)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677788888999999999999999999999887653
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=75.24 E-value=16 Score=34.48 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=43.3
Q ss_pred CeEEEEecCCCCEEEEEeC------------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154 260 PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC 319 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 319 (430)
....|.|.++|.+.+.... .+.|..++..++++...+.+.....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4567999999977763321 12577778878887666654324679999999999988776
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=74.62 E-value=46 Score=29.50 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=84.8
Q ss_pred CCCceeEEeecCCeEEEecCCCCcc-------cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCee
Q 014154 63 QNDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA 135 (430)
Q Consensus 63 p~g~~l~~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 135 (430)
|+.+++++.+.+|.|+--.+.+.+. +..+.. ...+.+..+...+... .++..+..|.+
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-------ke~D~l~~~~~~~t~d--------~ll~fT~~G~~ 69 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-------KEEDFIDQLWLVNTHD--------TLLTFTSSGKV 69 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-------SCCCCEEEEEEECTTC--------EEEEEETTSEE
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-------CCCCEEEEEEEecCCC--------EEEEEeCCCeE
Confidence 5667899999999999765432211 111111 1235565555444433 56666666766
Q ss_pred EEEEeeecCccccCCCc--ceEEeeecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154 136 SMRSIEVTKVSAESSCS--TVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI 210 (430)
Q Consensus 136 ~v~~~~~~~~~~~~~~~--~i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 210 (430)
.-+.+..-|.......| .+.+..+..+..|..+..-. .+.+|+.++..|.++...+....... ........+
T Consensus 70 ~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~---~~G~~ai~L 146 (370)
T 3l6v_A 70 FWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL---ARGKIAINL 146 (370)
T ss_dssp EEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC---TTCEESSCC
T ss_pred EEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc---CCceEEEEe
Confidence 55554332221111112 12223344455566554332 45689999999999998875422110 000000111
Q ss_pred cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154 211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245 (430)
Q Consensus 211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 245 (430)
...+.+-.+.. ......|+..+..|.+..+...
T Consensus 147 ~~~d~lv~v~~--~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 147 DEGDALVGVAL--TDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CTTCCEEEEEE--ECSCCEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEEE--eCCCceEEEEeCCCeEEEEEcc
Confidence 11234444444 2344567777888988888754
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.89 E-value=14 Score=38.66 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=32.5
Q ss_pred CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
.+.+++..++..++++-+.|+++|||++.+++++.+..+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445566677888999999999999999999998887543
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.99 E-value=41 Score=28.30 Aligned_cols=205 Identities=9% Similarity=-0.025 Sum_probs=107.5
Q ss_pred CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEe
Q 014154 103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG 181 (430)
Q Consensus 103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 181 (430)
.+.+..+...+... .++.-+..|.+.-..+..-|.... .+ . +..+..|..+.... +..+++..+
T Consensus 23 gD~~~~~~~~~t~~--------~ll~fT~~G~v~~~~~~~lp~~~~--~~----l-l~~~e~i~~v~~~~~~~~~~v~~T 87 (276)
T 3no0_A 23 KAPVVNILRVPFTE--------GLFLVSNRGRVYWIAGSQALQGSK--VS----L-KSREEKIVGAFIREKFGNRLLLAT 87 (276)
T ss_dssp CCCEEEEEEEETTS--------CEEEEETTSEEEEECSHHHHTSEE--CC----C-SSTTCCEEEEEEGGGSCSEEEEEE
T ss_pred CCeEEEEEEECCCC--------EEEEEcCCCeEEEEEhhhCccCcc--cc----c-CCCCCEEEEEECCcCCCCEEEEEe
Confidence 35665444444433 565566666555433322222111 11 2 44566676664421 567899999
Q ss_pred CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----C--c--ceEE
Q 014154 182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--R--PVMS 253 (430)
Q Consensus 182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~--~--~~~~ 253 (430)
.+|.++...+.... ... . ......+...+.+..+.. ......|+..+..|.+..+....- + . ....
T Consensus 88 ~~G~iKr~~l~~~~-~~~-~--G~~~i~lkegD~l~~~~~--~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~ 161 (276)
T 3no0_A 88 KKGYVKKIPLAEFE-YKA-Q--GMPIIKLTEGDEVVSIAS--SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK 161 (276)
T ss_dssp TTSEEEEEEGGGTT-TCS-T--TEECSCCCTTCCEEEEEE--CCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC
T ss_pred CCCEEEEEEHHHhh-hhc-C--CeEEEecCCCCEEEEEEE--eCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc
Confidence 99999999876532 100 0 000111112245555554 334557778889999888875421 1 0 0111
Q ss_pred EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR 326 (430)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 326 (430)
+.. ...|.++...+++..++..+..|.++...+... +-+..+. . .+.+..+........++..+.+|.+.
T Consensus 162 L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~-~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 162 LEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-T-KDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp CCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-S-SSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-C-CCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 221 245666555556678888999999998876532 2222221 1 33444443322333455556666666
Q ss_pred E--EECC
Q 014154 327 F--WDIK 331 (430)
Q Consensus 327 i--wd~~ 331 (430)
. ++..
T Consensus 239 r~~~~~~ 245 (276)
T 3no0_A 239 YDKINQK 245 (276)
T ss_dssp EEEEEGG
T ss_pred EeeeCHH
Confidence 6 6554
No 364
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=69.79 E-value=53 Score=28.16 Aligned_cols=197 Identities=9% Similarity=-0.015 Sum_probs=102.5
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------C
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---------C 194 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~ 194 (430)
..+++.+.+|.+.-..+..-...... ..-+....+..+..+..+........|+..+..|.++-+.... |
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~-~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRG-GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccC-CCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 36777888888776655321110000 0011111222334444444444566777788888876665432 1
Q ss_pred eeeEeeCCCCCCCCCCcCCcceeEEEEeec-CCCCEEEEEeCCCcEEEEECCCCC----cceE--EEeecCCCeEEEEec
Q 014154 195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRKFVAGTNDHQVRLYDTSAQR----RPVM--SFDFRETPIKAVAEE 267 (430)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~----~~~~--~~~~~~~~i~~~~~s 267 (430)
..+..+ +.+.....|.++..... .++.+++..+..|.++-..+.... .-+. .+..+ ..+..+...
T Consensus 83 ~~i~~~-------l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~ 154 (307)
T 1zi0_A 83 RPIVNL-------LPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLT 154 (307)
T ss_dssp EEGGGT-------SCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEE
T ss_pred eEhhhc-------cCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEe
Confidence 111111 11112244555433211 345678888999999988765211 1111 12223 455555554
Q ss_pred CCCCEEEEEeCCCcEEEEEccC---------CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154 268 PDSFNIYIGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331 (430)
Q Consensus 268 p~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~ 331 (430)
.....|+..+.+|.+..++... |.....+.. ...|.++...+++..|++.+..|.++-.++.
T Consensus 155 ~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 155 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC--CCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4556788888999988887642 112222332 4567777655556678888899998888764
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=69.55 E-value=54 Score=28.18 Aligned_cols=204 Identities=8% Similarity=0.035 Sum_probs=110.8
Q ss_pred ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EeeCC
Q 014154 124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKP 202 (430)
Q Consensus 124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~ 202 (430)
..++..+..|.++-..+..-.... ....-+....+..+..+..+........++..+..|.++-+....-... +.-.+
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~-~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQG-TGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCC-SSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccc-cCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 367788888888877654322100 0001122223333455555555555667788888898877765321110 00000
Q ss_pred CC-CCCCCCcCCcceeEEEEeec--CCCCEEEEEeCCCcEEEEECCCCCc------ceEEEeecCCCeEEEEecCCCCEE
Q 014154 203 PP-KNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFDFRETPIKAVAEEPDSFNI 273 (430)
Q Consensus 203 ~~-~~~~~~~~~~~v~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~sp~~~~l 273 (430)
.. ...+.+.....|..+... . .+...|+..+..|.++...+..... ....+.. ...+..+........+
T Consensus 88 ~~i~~~l~l~~~e~i~~~~~~-~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLGDQEEILTIKNS-KDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCCTTCCEEEEEEE-SCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccCCCCCCEEEEEEEe-ccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 00 001111122445544332 2 1456788889999999887753211 1111222 3455555555455678
Q ss_pred EEEeCCCcEEEEEccC---------CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 274 YIGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 274 ~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
+..+.+|.+..+.... |.....+.. ...|..+..-.++..|++.+..|..+...+..
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~--~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE--GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT--TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC--CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 8888999999888753 222223332 34566665555566788888999999888754
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=66.68 E-value=70 Score=28.42 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=78.0
Q ss_pred cEEEEECCCC--CcceEEEeec------CCCeEEEEec---CC----CCEEEEEe-CCCcEEEEEccCCeEEeeeeCC--
Q 014154 238 QVRLYDTSAQ--RRPVMSFDFR------ETPIKAVAEE---PD----SFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-- 299 (430)
Q Consensus 238 ~i~iwd~~~~--~~~~~~~~~~------~~~i~~~~~s---p~----~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-- 299 (430)
.|.+||+.+. + .++.+... .+.+..+.+. |. +.+++... ..+-|.+||+.+++.-+.+..+
T Consensus 124 kLv~~DL~t~~~~-li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYP-EVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCC-EEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCce-eEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 4556677765 3 34444432 2356777776 32 34555554 4577999999988765444210
Q ss_pred ---------------CCCCeEEEEecCC----CCeEEEEeCCCcEEEEECC-----CCceeeEEEeecccc--ceEEeee
Q 014154 300 ---------------CSGSIRSIARHPT----LPIIASCGLDSYLRFWDIK-----TRQLLSAVFLKQHLN--EVVFDSA 353 (430)
Q Consensus 300 ---------------~~~~v~~i~~~~~----~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~--~~v~~~~ 353 (430)
-...|..|+++|+ ++.|.-....+ -++|.+. .......+..-|... .....++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 0136888899987 67776665554 2344432 222111111222211 2224566
Q ss_pred cc-ccccc-cccCCCCceEecCCCC
Q 014154 354 FA-DKEVA-NAAADAPMLEIQNGND 376 (430)
Q Consensus 354 ~s-~~g~~-~~~~~d~~i~~~~~~~ 376 (430)
+. .+|.+ ++--..+.|..|+...
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 75 67876 7777888999998765
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.50 E-value=17 Score=34.64 Aligned_cols=56 Identities=9% Similarity=-0.042 Sum_probs=39.9
Q ss_pred eEEEEecCCCCeEEEEeCC------------CcEEEEECCCCceeeEEEeeccccceEEeeecccccccc
Q 014154 304 IRSIARHPTLPIIASCGLD------------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN 361 (430)
Q Consensus 304 v~~i~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 361 (430)
.-.|+|+|.|.+++.-..+ +.+.+.+..+++...- +.++..+.++.++|+||++.+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf--~~~P~gaE~TG~~fspDg~tl 545 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRF--MVGPIGCEVTGISFSPDQKTL 545 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEE--EECCTTCEEEEEEECTTSSEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEE--EeCCCCccCcCeeECCCCCEE
Confidence 4678999999866554322 2456666667776543 567778889999999999863
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=59.63 E-value=95 Score=27.57 Aligned_cols=169 Identities=13% Similarity=0.062 Sum_probs=92.3
Q ss_pred eEEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEEEEe-ecCC----CCEEEEEe-CCCcEEEEECCCCCcceEEEe-
Q 014154 185 EVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFL-SIDD----HRKFVAGT-NDHQVRLYDTSAQRRPVMSFD- 255 (430)
Q Consensus 185 ~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~- 255 (430)
.|.+||+.+. +.++.+.-...... ..+.+..+++. ..++ +.++..+. ..+-|.++|+.+++. .+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~---~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE---KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC---CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc---cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccC
Confidence 6778899888 77777654321111 12567778874 1222 23433333 466799999998653 22221
Q ss_pred -------------ec----CCCeEEEEecCC----CCEEEEEeCCCcEEEEEcc-----CCe---EEeeeeCCC--CCCe
Q 014154 256 -------------FR----ETPIKAVAEEPD----SFNIYIGNGSGDLASVDIR-----TGK---LLGCFIGKC--SGSI 304 (430)
Q Consensus 256 -------------~~----~~~i~~~~~sp~----~~~l~~~~~d~~i~iwd~~-----~~~---~~~~~~~~~--~~~v 304 (430)
+. ...|..|+++|+ ++.|+-....+. ++|.+. ... .+..+ +.. ...-
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~ 277 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDA 277 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCE
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCc
Confidence 00 146888999998 777777665552 333332 221 11111 210 1233
Q ss_pred EEEEec-CCCCeEEEEeCCCcEEEEECCCC----ceeeEEEeeccccceEEeeeccccccc
Q 014154 305 RSIARH-PTLPIIASCGLDSYLRFWDIKTR----QLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 305 ~~i~~~-~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
..++.. .+|.++++--..+.|..|+..+. +....+. ....-.....+.+.++|.+
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~-~d~~l~~pd~~~i~~~g~L 337 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVY-TSSRFVFGTDISVDSKGGL 337 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEE-ECTTCCSEEEEEECTTSCE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEE-ECCCccccCeEEECCCCeE
Confidence 456675 57777777778889999998751 2223321 1121222455666556655
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.35 E-value=15 Score=35.63 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=30.9
Q ss_pred CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341 (430)
Q Consensus 303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 341 (430)
.|.++.+ +..++++-+.|..+|+|++++++++.+..+
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 467999999999999999999999988766
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.51 E-value=18 Score=35.11 Aligned_cols=37 Identities=11% Similarity=-0.043 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298 (430)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 298 (430)
.|.++.+ +..++++-+.|.++|+||+++++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 467999999999999999999998776653
No 371
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=56.58 E-value=97 Score=26.73 Aligned_cols=215 Identities=9% Similarity=0.014 Sum_probs=105.5
Q ss_pred ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEe---cCCCCcccce-e
Q 014154 16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL---NPLNGDLRVA-I 91 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iw---d~~~~~~~~~-~ 91 (430)
.+++.+.+|.||--.+..-... ......+...+.-+ ..+.. + ..+.|+..+..|.+.-. ++........ .
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~-~~~~~~lke~D~l~--~~~~~--~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAAS-NGQDFAMKDTDRLL--AMLEM--N-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHT-TTCCCCCCTTCCEE--EEEEE--E-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEEEeCCCEEEEeEHHHhhhc-CccccccCCCCEEE--EEEEE--C-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3678889999987765531000 00011222222221 11211 1 12356677777875444 4432221000 0
Q ss_pred eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154 92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD 171 (430)
Q Consensus 92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 171 (430)
.....+.+. ..+.+.++...+.... ...++..+..|.+....+..-..... ..-+....+..+..+..+...
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~-----~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv~~~~~ 152 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFEL-----NGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVVDVHLT 152 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTS-----SCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEEEEEEE
T ss_pred ChhhccCCC-CCCEEEEEEEecccCC-----CceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEEEEEEe
Confidence 000111122 2345665554442110 14688899999999888753321110 112333444445566665555
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
.....|+..+.+|.+..+....-..... .........+.....|.++... .++...|++.+..|..+..++..
T Consensus 153 ~~~~~i~l~T~~G~~irf~~~ev~~~gR-~a~GV~~i~L~~~d~Vv~~~~~-~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 153 DGMNELFLVTHNGYALWFDESEVSIVGV-RAAGVKGMNLKEGDYIVSGQLI-TSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSCSEEEEEETTSEEEEEEGGGSCBCCS-SCCCEECCCCCTTCCEEEEEEE-CCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEEEHHHCcccCC-CCcCEEEEEeCCCCEEEEEEEE-cCCCcEEEEEECCCceEEEEHHH
Confidence 5666788899999998888754211110 0000011111122456666553 33332678888899888777653
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.41 E-value=39 Score=31.92 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=39.4
Q ss_pred CCeEEEEecCCCCeEEEEeC------------CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154 302 GSIRSIARHPTLPIIASCGL------------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 302 ~~v~~i~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
.....|.|.++|.+.+.... .+.|..++..+++.... +.+.....++.++|+||++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~f--l~~P~~aEpnGiafSPD~kt 544 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRF--MVGPIGCEVTGISFSPDQKT 544 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEE--EECCTTCEEEEEEECTTSSE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEE--EeCCCCccccCCEECCCCCE
Confidence 34678999999987663321 12577777777776543 44444556799999999987
No 373
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=49.93 E-value=1.4e+02 Score=26.45 Aligned_cols=245 Identities=10% Similarity=-0.009 Sum_probs=117.5
Q ss_pred eEEEEccCCeeEEEEeeecCccccCCCcceEEe---eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC
Q 014154 125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW---NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK 201 (430)
Q Consensus 125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 201 (430)
..+....+|.+..|-.......-.......... .......+..++++......+.-..+|.|+.|-....-.+-.-.
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 445556777777776433222100001111111 11122345556777777777778889999999654311100000
Q ss_pred CC---CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-----------cceEEEeecCCCeEEEEec
Q 014154 202 PP---PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEE 267 (430)
Q Consensus 202 ~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~i~~~~~s 267 (430)
.. ............|..++. .....+.-..+|.|+.|-..... .|..........|..++..
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~----G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAA----GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEE----CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CccCcCCeEecccCCCeEEEEEe----CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 00 000000000124555555 34455555789999999754311 0111111122356677665
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC-e----------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce-
Q 014154 268 PDSFNIYIGNGSGDLASVDIRTG-K----------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL- 335 (430)
Q Consensus 268 p~~~~l~~~~~d~~i~iwd~~~~-~----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 335 (430)
....+.++-..+|.|+.|-.... + ....+.......|..|+.-.. +.+.-..||.|+.|=......
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCC
Confidence 43346666678999999964321 0 111122111234666665433 344446899999997643111
Q ss_pred -------eeE-EEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154 336 -------LSA-VFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND 376 (430)
Q Consensus 336 -------~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~ 376 (430)
... ..+..-....|..++..... .++...||.|..|-.+.
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h-~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIATGSLH-CVCCTEDGEVYTWGDND 345 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEECSSE-EEEEETTCCEEEEECCT
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEeccCe-EEEECCCCCEEEeeCCC
Confidence 111 00111111224444443222 25557889999998875
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=48.35 E-value=1.3e+02 Score=25.91 Aligned_cols=208 Identities=10% Similarity=0.062 Sum_probs=103.9
Q ss_pred ceeEEeecCCeEEEecCCCCcccce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154 66 PLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK 144 (430)
Q Consensus 66 ~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 144 (430)
+.+++-+.+|.|+--.+.+.+.... -.+.....+ ...+.+..+...+... .++.-+..|.+.-..+..-|
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~-ke~D~~~~~~~~~t~d--------~ll~fT~~Gr~y~~~~~~lp 74 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL-KQDDIVAHFFVCSTHD--------LILFFTTQGRVYRAKAYDLP 74 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCC-CGGGCEEEEEEEETTS--------EEEEEETTSEEEEEEGGGSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccccc-CCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEEEHHHCc
Confidence 4677788888888665432211100 000000000 1123454444433333 55555666655544433222
Q ss_pred ccccCCCcc--eEEeeecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEE
Q 014154 145 VSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219 (430)
Q Consensus 145 ~~~~~~~~~--i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 219 (430)
.......|. ..+..+..+..|..+..-+ +..+++..+.+|.++...+........ .+ .....+...+.+..+
T Consensus 75 ~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G--~~~i~lke~D~lv~~ 151 (327)
T 3uc1_A 75 EASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GG--IVAVNLRDNDELVGA 151 (327)
T ss_dssp BCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SC--EESCBCCTTCCEEEE
T ss_pred CCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-Cc--eEEEEECCCCEEEEE
Confidence 221111121 1122333445555554332 578999999999999988754221110 00 000011112445555
Q ss_pred EEeecCCCCEEEEEeCCCcEEEEECC--CC----Cc--ceE--EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154 220 AFLSIDDHRKFVAGTNDHQVRLYDTS--AQ----RR--PVM--SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288 (430)
Q Consensus 220 ~~~~~~~~~~l~s~~~dg~i~iwd~~--~~----~~--~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~ 288 (430)
.. ......|+..+..|.+..+... .- +. =+. .+. ....|.++...+.+.+|+..+..|.++.-.+.
T Consensus 152 ~~--~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 152 VL--CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EE--ECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EE--ecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 44 2344567777899998888766 21 10 011 121 23456666665566788999999999888764
No 375
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=39.47 E-value=2.2e+02 Score=25.95 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=36.2
Q ss_pred ceEEEeecC-CCeEEEEecCC-------CCEEEEEeCCCcEEEEEccCCeE---Eeee-eC-------CCCCCeEEEEec
Q 014154 250 PVMSFDFRE-TPIKAVAEEPD-------SFNIYIGNGSGDLASVDIRTGKL---LGCF-IG-------KCSGSIRSIARH 310 (430)
Q Consensus 250 ~~~~~~~~~-~~i~~~~~sp~-------~~~l~~~~~d~~i~iwd~~~~~~---~~~~-~~-------~~~~~v~~i~~~ 310 (430)
|+..+..|. ..+..+.|-.. +.+| ++...+.|....+..... ...+ .+ .....+..+...
T Consensus 266 P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~ 344 (463)
T 2wg3_C 266 SLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED 344 (463)
T ss_dssp CCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred CeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence 455554331 46777777432 3344 455557766666543321 1112 11 113578999999
Q ss_pred CCCCeEEEEe
Q 014154 311 PTLPIIASCG 320 (430)
Q Consensus 311 ~~~~~l~s~~ 320 (430)
|+|.++++..
T Consensus 345 pdG~Lyv~~~ 354 (463)
T 2wg3_C 345 ELGEVYILSS 354 (463)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEEEEec
Confidence 9998777664
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=32.96 E-value=1.5e+02 Score=27.87 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=42.8
Q ss_pred CeEEEEecCC--CCEEEEEeCCCcEEEEEccCC----eEEeeeeCCC-CCCeE-EEEecCCCCeEEEEeCCCcEEE
Q 014154 260 PIKAVAEEPD--SFNIYIGNGSGDLASVDIRTG----KLLGCFIGKC-SGSIR-SIARHPTLPIIASCGLDSYLRF 327 (430)
Q Consensus 260 ~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~-~~~v~-~i~~~~~~~~l~s~~~dg~i~i 327 (430)
..++|+.... -..++.|+.+|.|.-..+... ..+..+.... ..+|. .+.++++..+|+.++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4666665443 356778999998876655422 1233333221 45775 8999999999998887664443
No 377
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=32.67 E-value=1.3e+02 Score=21.05 Aligned_cols=26 Identities=4% Similarity=-0.272 Sum_probs=14.1
Q ss_pred EEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154 305 RSIARHPTLPIIASCGLDSYLRFWDIKT 332 (430)
Q Consensus 305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~ 332 (430)
..+.+..+|.+++.. .++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 346666777766543 23433 666543
No 378
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=31.84 E-value=2.5e+02 Score=25.98 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=42.9
Q ss_pred CeEEEEecC----CC--CEEEEEeCCCcEEEEEcc-CCe-------EEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCc
Q 014154 260 PIKAVAEEP----DS--FNIYIGNGSGDLASVDIR-TGK-------LLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSY 324 (430)
Q Consensus 260 ~i~~~~~sp----~~--~~l~~~~~d~~i~iwd~~-~~~-------~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~ 324 (430)
..++|+... ++ ..++.|+.+|.|.-.-+. .+. .+.++... ...+|..+.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666542 23 467789999987654332 211 22233321 1568999999999999999988875
Q ss_pred EEE
Q 014154 325 LRF 327 (430)
Q Consensus 325 i~i 327 (430)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 379
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.63 E-value=4e+02 Score=25.95 Aligned_cols=96 Identities=4% Similarity=-0.008 Sum_probs=55.5
Q ss_pred CCCcEEEEECCCCC------cceEE-Eee-cCCCeEEEEecCCCCEEEEEeCCCc--EEEEEccCCe-EEee-eeCCCCC
Q 014154 235 NDHQVRLYDTSAQR------RPVMS-FDF-RETPIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGK-LLGC-FIGKCSG 302 (430)
Q Consensus 235 ~dg~i~iwd~~~~~------~~~~~-~~~-~~~~i~~~~~sp~~~~l~~~~~d~~--i~iwd~~~~~-~~~~-~~~~~~~ 302 (430)
..+.|...|+.++. ..... +.. ....+..+.+..+ .++++...++. |.++|+.+++ .... +.....+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 46778889887631 11232 322 2346778888865 46666666664 6778877775 2233 2221124
Q ss_pred CeEEEEecCCCCe-EEEEe---CCCcEEEEECC
Q 014154 303 SIRSIARHPTLPI-IASCG---LDSYLRFWDIK 331 (430)
Q Consensus 303 ~v~~i~~~~~~~~-l~s~~---~dg~i~iwd~~ 331 (430)
.+..+.+++++.. +++.+ .-+.+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5666777777654 44443 23568888876
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.01 E-value=4.3e+02 Score=25.75 Aligned_cols=198 Identities=13% Similarity=0.032 Sum_probs=95.7
Q ss_pred EEE-EcCCCCEEEEE-e----CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe------
Q 014154 167 FSK-VDISEKFSLFG-G----KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------ 234 (430)
Q Consensus 167 ~~~-~~~~~~~l~~~-~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------ 234 (430)
.+. ++|++++++.+ + .-..++++|+.+++.+...-..... .+.........++|. +...++.+.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k-~~~~~~~~~~~~~W~---d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITN-SGKLLEGKFTYPTWI---NKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCT-TCCBCCEETCCEEEE---ETTEEEECCCCSTTC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccc-cccccccccceeeEE---CCCEEEEEeCCCCCC
Confidence 344 78888877653 2 2336999999998776311010000 000000011333663 223333322
Q ss_pred -----CCCcEEEEECCCCCc-ceEEEeecCCCe-EEEEecCCCCE-----EEEEeCC---CcEEEEEccC--CeEEeeee
Q 014154 235 -----NDHQVRLYDTSAQRR-PVMSFDFRETPI-KAVAEEPDSFN-----IYIGNGS---GDLASVDIRT--GKLLGCFI 297 (430)
Q Consensus 235 -----~dg~i~iwd~~~~~~-~~~~~~~~~~~i-~~~~~sp~~~~-----l~~~~~d---~~i~iwd~~~--~~~~~~~~ 297 (430)
....|+.|.+-+... -...+......+ .+...++++++ +++.+.+ ..+.+.|+.. ++.. .+.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KIN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-Eee
Confidence 234688888876432 234454433332 34455667653 4443322 4566667653 4432 232
Q ss_pred CCCCCCeEEEEecCCCCeEEEE----------eCCCcEEEEECCCCc-------eeeEEEeeccccceEEeeeccccccc
Q 014154 298 GKCSGSIRSIARHPTLPIIASC----------GLDSYLRFWDIKTRQ-------LLSAVFLKQHLNEVVFDSAFADKEVA 360 (430)
Q Consensus 298 ~~~~~~v~~i~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~g~~ 360 (430)
.. .. ..+..+.++.+++.. ...+.|.+.++.++. ....+ +.......+..+.|..+.-+
T Consensus 288 ~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~l~ 363 (711)
T 4hvt_A 288 MP-SD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL-FTPTANEVFNFISTTKDRVF 363 (711)
T ss_dssp SC-TT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE-ECCCTTEEEEEEEECSSCEE
T ss_pred cC-Cc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE-ECCCCCCeEEEEEEECCEEE
Confidence 21 11 122334455554432 146778889987642 12222 22233455678888876544
Q ss_pred cccCCCCc--eEecC
Q 014154 361 NAAADAPM--LEIQN 373 (430)
Q Consensus 361 ~~~~~d~~--i~~~~ 373 (430)
++...++. +.+++
T Consensus 364 ~~~~~~~~~~l~~~~ 378 (711)
T 4hvt_A 364 LATYDNVVAKVVTFT 378 (711)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEEEEE
Confidence 55555554 44454
No 381
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=27.93 E-value=3.1e+02 Score=24.00 Aligned_cols=68 Identities=10% Similarity=-0.058 Sum_probs=35.1
Q ss_pred CeEEEEecCC--CCEEEEEeCCCcEEEEEcc--CCeEEeeeeC---------------CCCCCeEEEEecCC-CCeEEEE
Q 014154 260 PIKAVAEEPD--SFNIYIGNGSGDLASVDIR--TGKLLGCFIG---------------KCSGSIRSIARHPT-LPIIASC 319 (430)
Q Consensus 260 ~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~---------------~~~~~v~~i~~~~~-~~~l~s~ 319 (430)
.|.++++.|. ...|+++...+-|...+-. +.+.+..+.. .....+.+|.++|. ...|+.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 4778888872 4566666666655544321 1122211110 01235789999884 3445555
Q ss_pred eCCCcEEE
Q 014154 320 GLDSYLRF 327 (430)
Q Consensus 320 ~~dg~i~i 327 (430)
..++.|..
T Consensus 196 ~~~ggl~~ 203 (394)
T 3b7f_A 196 MSSGGVFE 203 (394)
T ss_dssp EETBEEEE
T ss_pred ECCCCEEE
Confidence 44444443
No 382
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=27.75 E-value=3.1e+02 Score=23.98 Aligned_cols=100 Identities=11% Similarity=0.033 Sum_probs=49.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCCcceEEE--eecCCCeEEEEecC-CCCEEEEEeCCC----cEEEEEccCC---eEEee-
Q 014154 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEP-DSFNIYIGNGSG----DLASVDIRTG---KLLGC- 295 (430)
Q Consensus 227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~sp-~~~~l~~~~~d~----~i~iwd~~~~---~~~~~- 295 (430)
...|.+|+..| +.+++...+....... ......|.+|++.| +...|++++..+ .|...+ ..+ +.+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 34677788777 5555543211112222 12245799999998 334455555554 344332 222 22211
Q ss_pred --eeCC-------CCCCeEEEEecCC--CCeEEEEeCCCcEEEE
Q 014154 296 --FIGK-------CSGSIRSIARHPT--LPIIASCGLDSYLRFW 328 (430)
Q Consensus 296 --~~~~-------~~~~v~~i~~~~~--~~~l~s~~~dg~i~iw 328 (430)
+... ....|.++++.|. ...|..++..+.|...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 1110 0125778999872 4456666555655444
No 383
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=27.00 E-value=21 Score=17.10 Aligned_cols=12 Identities=50% Similarity=1.140 Sum_probs=8.3
Q ss_pred cccCCCCCCCcc
Q 014154 5 TTLECPGCPPLR 16 (430)
Q Consensus 5 ~~~~~~~~~~~~ 16 (430)
-++..||||.++
T Consensus 10 ytfrgpgcptlk 21 (29)
T 1ic9_A 10 YTFRGPGCPTLK 21 (29)
T ss_dssp EEEECSCCCCCC
T ss_pred eeecCCCCCccc
Confidence 355688998754
No 384
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=26.97 E-value=1.6e+02 Score=20.38 Aligned_cols=43 Identities=5% Similarity=0.099 Sum_probs=21.8
Q ss_pred EEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEE
Q 014154 219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (430)
+.+ ..+|++++.. .++. .+|...+.. ......+.+.++|++++
T Consensus 55 l~l--~~dGNLVl~~-~~~~-~~W~S~t~~---------~~g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 55 LTL--HNNGNLVIYD-QSNR-VIWQTKTNG---------KEDHYVLVLQQDRNVVI 97 (110)
T ss_dssp EEE--CTTSCEEEEC-TTCC-EEEECCCCC---------SSSCCEEEECTTSCEEE
T ss_pred EEE--eCCCCEEEEC-CCCc-EEEecCCCC---------CCCCEEEEEeCCccEEE
Confidence 445 5677766653 2333 467654311 11233556667776554
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.45 E-value=2.7e+02 Score=22.90 Aligned_cols=150 Identities=10% Similarity=0.063 Sum_probs=78.9
Q ss_pred eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154 67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS 146 (430)
Q Consensus 67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 146 (430)
.+++.+.+|.|+--...... ...+ . ...++.+..+...+... .++..+..|.+.-..+..-|..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-~~~~------~-lke~D~l~~~~~~~t~~--------~ll~~T~~Gr~~~~~~~elp~~ 67 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-APGL------N-YKAGDSFKAAVKGKSNQ--------PVVFVDSTGRSYAIDPITLPSA 67 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-STTS------C-CCTTCCEEEEEEEETTS--------CEEEEETTSEEEEECGGGSCCS
T ss_pred EEEEEeCCCEEEEeeCCcCC-ceec------c-CCCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEEEHHHCCCc
Confidence 45667788888765532211 0000 0 12335665554444433 5666677776555544332221
Q ss_pred ccCCCcc-e-EEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eeeEeeCCCCCCCCCCcCCccee
Q 014154 147 AESSCST-V-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-------EKIWTAKPPPKNSLGIFTPTWFT 217 (430)
Q Consensus 147 ~~~~~~~-i-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~v~ 217 (430)
. ..|. + ....+..+..|..+....++.+|+.++..|.++...+..- .....+.. .+.+-
T Consensus 68 r--~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~----------~d~lv 135 (256)
T 1zvt_A 68 R--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE----------NAHVM 135 (256)
T ss_dssp S--SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT----------TCCBC
T ss_pred C--CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC----------CCEEE
Confidence 1 1111 1 1233444566776644345677888999999999887532 22222221 12333
Q ss_pred EEEEeec-CCCCEEEEEeCCCcEEEEECCC
Q 014154 218 SAAFLSI-DDHRKFVAGTNDHQVRLYDTSA 246 (430)
Q Consensus 218 ~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~ 246 (430)
.+.. . ..+..|+..+.+|.+..+....
T Consensus 136 ~~~~--~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 136 PPVV--IEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp CCEE--CCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEE--ecCCCCEEEEEcCCCeEEEEEHHH
Confidence 3333 2 2445677788888888887754
No 386
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=26.27 E-value=76 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=22.5
Q ss_pred CcEEEEECCCCceeeEEEeeccccceEEe
Q 014154 323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFD 351 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 351 (430)
-.|.|||+.+|..+.++.+.|..++.+.+
T Consensus 18 E~V~IvNvnNG~Rf~TYvI~GerGSG~I~ 46 (96)
T 1vc3_B 18 EQVDIYDITNGARLTTYALPGERGSGVIG 46 (96)
T ss_dssp CEEEEEETTTCCEEEEECEEECTTTTCEE
T ss_pred CEEEEEECCCCceEEEEEEEccCCCCeEE
Confidence 36899999999999998888875544333
No 387
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=25.91 E-value=98 Score=21.69 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=32.6
Q ss_pred CCCeEEEEecCCCCeEEE------E--eCCCcEEEEECCCCceeeEEEeeccccceEEe
Q 014154 301 SGSIRSIARHPTLPIIAS------C--GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFD 351 (430)
Q Consensus 301 ~~~v~~i~~~~~~~~l~s------~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 351 (430)
...|+...++-.|..-+= + -.--.|.|||+.+|..+.++.+.|..++.+.+
T Consensus 15 ratVT~a~L~Y~GSitID~~Ll~aA~i~~~E~V~I~NvnNG~Rf~TYvI~GerGSg~I~ 73 (114)
T 3oug_A 15 YATVTGKDLFYVGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEPNSKTIA 73 (114)
T ss_dssp EEECCEEESSCC-CEEEEHHHHHHTTCCTTBEEEEEETTTCCEEEEEEEEECTTSCCEE
T ss_pred ceEEecccccccceEEECHHHHHHcCCCcCCEEEEEECCCCceEEEEEEEccCCCCEEE
Confidence 566676666655542110 0 12346999999999999998888876554333
No 388
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=25.02 E-value=1.8e+02 Score=20.45 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=20.1
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEE
Q 014154 224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY 274 (430)
Q Consensus 224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (430)
..+|++++.. .++. .+|...+.. ......+.+.++|++++
T Consensus 68 ~~dGNLVl~d-~~~~-~lW~S~~~~---------~~g~~~l~l~~~Gnlvl 107 (119)
T 1b2p_A 68 QPDGVLVVIT-NENV-TVWQSPVAG---------KAGHYVLVLQPDRNVVI 107 (119)
T ss_dssp CTTSCEEEEC-TTCC-EEEECSCCC---------CSSCEEEEECTTSCEEE
T ss_pred ccCCEEEEEe-CCCc-EEEcCCCCC---------CCCCEEEEEECCCcEEE
Confidence 5677766653 2333 467654311 11234556666776444
No 389
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.95 E-value=2.4e+02 Score=26.08 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=37.5
Q ss_pred CEEEEEeCCCcEEEEECC-CC------CcceEEEee--cCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 014154 228 RKFVAGTNDHQVRLYDTS-AQ------RRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 228 ~~l~s~~~dg~i~iwd~~-~~------~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~i 284 (430)
..++.|+.+|.|+-.-+. .. ...+..+.. ...+|..+.++++..+|++++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 367788999987543332 21 112333332 3478999999999999999988876654
No 390
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=24.88 E-value=4.4e+02 Score=24.82 Aligned_cols=159 Identities=12% Similarity=0.084 Sum_probs=82.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC---------CCCCC-CcC-----Ccc-eeEEEEeecCCCCEEEEEeC-
Q 014154 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP---------KNSLG-IFT-----PTW-FTSAAFLSIDDHRKFVAGTN- 235 (430)
Q Consensus 173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~~-~~~-----~~~-v~~~~~~~~~~~~~l~s~~~- 235 (430)
....+++|+.||.++.++.. +++.+.+.... ...+. ..| ..+ +..+.+ ...-+.++.++.
T Consensus 84 R~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~--~g~wrtvLvggmg 160 (570)
T 3hx6_A 84 RAPRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFF--GGAWHTVLIGSLR 160 (570)
T ss_dssp CCCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEE--TTEEEEEEEEECT
T ss_pred CccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEe--CCcceEEEEEecC
Confidence 34678889999999999876 66655443211 00000 001 011 222222 111233444442
Q ss_pred --CCcEEEEECCCCCcceEEEeec---------CCCeEEEEecCCCCEEEEEeC-------CCcEEEEEccCCeEEeeee
Q 014154 236 --DHQVRLYDTSAQRRPVMSFDFR---------ETPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRTGKLLGCFI 297 (430)
Q Consensus 236 --dg~i~iwd~~~~~~~~~~~~~~---------~~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~ 297 (430)
...++..|+.....+...++.. .-.--.|.--.++++++.-+. ...|+|.|+.+|.++..+.
T Consensus 161 ~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~ 240 (570)
T 3hx6_A 161 AGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLE 240 (570)
T ss_dssp TSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEE
T ss_pred CCCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEe
Confidence 2357777776643333322221 001112233335665544332 3479999999999988875
Q ss_pred CCC----CCCeEEEE-ecC--CC--CeEEEEeCCCcEEEEECCCCc
Q 014154 298 GKC----SGSIRSIA-RHP--TL--PIIASCGLDSYLRFWDIKTRQ 334 (430)
Q Consensus 298 ~~~----~~~v~~i~-~~~--~~--~~l~s~~~dg~i~iwd~~~~~ 334 (430)
... ...+..+. +.. |+ .++..|...|.|.-+|+....
T Consensus 241 ~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 241 VTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp ECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred cCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 320 12233333 222 33 578999999999999987644
No 391
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=23.69 E-value=3.8e+02 Score=23.58 Aligned_cols=164 Identities=8% Similarity=-0.012 Sum_probs=83.1
Q ss_pred ceeeecCCCceEEEEccCC---C-CCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEe---cCCCCccc
Q 014154 16 RALTFDSLGLIKVIEARGE---H-GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL---NPLNGDLR 88 (430)
Q Consensus 16 ~l~t~~~dg~i~vw~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iw---d~~~~~~~ 88 (430)
.+++.+.+|.||--.+..- . .+.-.....+.... .+ ...+.. + ..+.|+..+..|.+.-+ ++......
T Consensus 9 ~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D-~l-~~~~~~--~-t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 9 VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEED-FI-DQLWLV--N-THDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCC-CE-EEEEEE--C-TTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCC-EE-EEEEEe--c-CCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 4778889999997655321 0 00011222333322 21 111211 1 12456666677775444 44322110
Q ss_pred -ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154 89 -VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF 167 (430)
Q Consensus 89 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 167 (430)
.-.....-+.+ ...+.+.++........+ ..++.++..|.+....+..-.... . .-+....+..+..+..
T Consensus 84 a~G~~i~~ll~L-~~~e~Iv~~~~~~~~~~~-----~~ll~~T~~G~vKrt~l~e~~~~~--~-~G~~ai~L~~~d~lv~ 154 (370)
T 3l6v_A 84 ARGRPIINWIPL-ESGERVQAVLPVREYADN-----RYVFMATRNGTVKKTPLSEFAFRL--A-RGKIAINLDEGDALVG 154 (370)
T ss_dssp SCCEEGGGSCCC-CTTCCEEEEEEESCCCTT-----CEEEEEETTSEEEEEEGGGGCSCC--T-TCEESSCCCTTCCEEE
T ss_pred cCCcCHhhccCC-CCCCEEEEEEEeccCCCC-----cEEEEEeCCCeEEEeEHHHhhccc--C-CceEEEEeCCCCEEEE
Confidence 00000111112 234567666555321111 478999999999988875433211 1 1233334444556666
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC
Q 014154 168 SKVDISEKFSLFGGKGVEVNVWDLDK 193 (430)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~~d~~~ 193 (430)
+........|+..+.+|.+..++...
T Consensus 155 v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 155 VALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCceEEEEeCCCeEEEEEccc
Confidence 65555666788889999988887653
No 392
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.27 E-value=1.7e+02 Score=27.40 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=41.1
Q ss_pred eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc---ceEEEee--cCCCeE-EEEecCCCCEEEEEeCCCcEEE
Q 014154 216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDF--RETPIK-AVAEEPDSFNIYIGNGSGDLAS 284 (430)
Q Consensus 216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~--~~~~i~-~~~~sp~~~~l~~~~~d~~i~i 284 (430)
+++++.....+...++.|+.+|.|+-.-+..... .+..+.. ...+|. .+.++++..+|++++..+.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3444443223445678889999876554432211 1222222 245775 8899999999999877665444
No 393
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=21.81 E-value=99 Score=21.26 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=21.9
Q ss_pred CcEEEEECCCCceeeEEEeeccccceEEe
Q 014154 323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFD 351 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 351 (430)
-.|.|||+.+|..+.++.+.|. ++.+.+
T Consensus 18 E~V~I~NvnNG~Rf~TYvI~Ge-GSG~I~ 45 (102)
T 3plx_B 18 EKVQVVNVNNGARFETYTIATQ-EEGVVC 45 (102)
T ss_dssp CEEEEEETTTCCEEEEECEEES-STTCEE
T ss_pred CEEEEEECCCCcEEEEEEEEcC-CCCEEE
Confidence 3689999999999999888887 554333
No 394
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=21.07 E-value=1.2e+02 Score=22.26 Aligned_cols=28 Identities=7% Similarity=0.292 Sum_probs=22.6
Q ss_pred CcEEEEECCCCceeeEEEeeccccceEE
Q 014154 323 SYLRFWDIKTRQLLSAVFLKQHLNEVVF 350 (430)
Q Consensus 323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~ 350 (430)
-.|.|||+.+|..+.++.+.|..++.+.
T Consensus 59 EkV~IvNvnNG~RfeTYvI~GerGSG~I 86 (143)
T 1pqh_A 59 EAIDIWNVTNGKRFSTYAIAAERGSRII 86 (143)
T ss_dssp CEEEEEETTTCCEEEEEEEEECTTCCCE
T ss_pred CEEEEEECCCCceEEEEEEEccCCCceE
Confidence 4699999999999999888887655433
Done!