BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014155
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of
3-Phosphoshikimate 1- Carboxyvinyltransferase From
Vibrio Cholerae In Complex With Shikimate-3-Phosphate
(Partially Photolyzed) And Glyphosate
Length = 450
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 207/354 (58%), Gaps = 17/354 (4%)
Query: 74 QSKASE-IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDA 132
QS A E + LQPI ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HML+A
Sbjct: 21 QSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNA 80
Query: 133 LKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGN 192
L KLG+N VEG G F T +ELFLGNAGTAMRPL AA+ G+
Sbjct: 81 LTKLGVNYRLSADKTTCEVEGLGQAF----HTTQPLELFLGNAGTAMRPLAAALCLGQGD 136
Query: 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXX 252
Y+L G PRM+ERPIG LV L+Q GA ++ + N PP+RI
Sbjct: 137 --YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQ-GTGLQAGTVTIDGSI 193
Query: 253 XXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312
Q+ G V I+I+ +L+S PY+++TL +ME+FGV V + D + F I
Sbjct: 194 SSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFVIPA 252
Query: 313 GQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKV 372
GQ Y SPG VEGDASSASYF G G +S+QGD++FA+ LEKMGA++
Sbjct: 253 GQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQI 312
Query: 373 TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
W ++ V R L AVD++ N +PD AMT+A ALFA G TAIR+
Sbjct: 313 EWGDDYVIAR--------RGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRN 358
>pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate And Glyphosate
pdb|1G6T|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3-
Phosphate
pdb|1X8R|A Chain A, Epsps Liganded With The (s)-phosphonate Analog Of The
Tetrahedral Reaction Intermediate
pdb|1X8T|A Chain A, Epsps Liganded With The (r)-phosphonate Analog Of The
Tetrahedral Reaction Intermediate
pdb|2AA9|A Chain A, Epsp Synthase Liganded With Shikimate
pdb|2AAY|A Chain A, Epsp Synthase Liganded With Shikimate And Glyphosate
pdb|2PQ9|A Chain A, E. Coli Epsps Liganded With (R)-Difluoromethyl Tetrahedral
Reaction Intermediate Analog
Length = 427
Score = 250 bits (639), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 148/347 (42%), Positives = 203/347 (58%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNAGTAMRPL AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAGTAMRPLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRN 333
>pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded
With Shikimate-3-Phosphate
Length = 427
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 202/347 (58%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNA TAMRPL AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAATAMRPLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRN 333
>pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate
5-enol- Pyruvylshikimate-3-phosphate Synthase: A
Distinctive Protein Fold
Length = 427
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 203/347 (58%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSK++SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKTVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNAGTAMRPL AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAGTAMRPLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPDAAMTIATAALFAKGTTRLRN 333
>pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p
pdb|3FJZ|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p And
Glyphosate
Length = 427
Score = 248 bits (632), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 202/347 (58%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNAG AMRPL AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAGIAMRPLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRN 333
>pdb|2QFS|A Chain A, E.coli Epsp Synthase Pro101ser Liganded With S3p
pdb|2QFT|A Chain A, E.Coli Epsp Synthase Pro101ser Liganded With S3p And
Glyphosate
Length = 427
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 202/347 (58%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNAGTAMR L AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAGTAMRSLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRN 333
>pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p
pdb|2QFU|A Chain A, E.Coli Epsp Synthase Pro101leu Liganded With S3p And
Glyphosate
Length = 427
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 202/347 (58%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNAGTAMR L AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAGTAMRLLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRN 333
>pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p
pdb|3FK1|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p
And Glyphosate
Length = 427
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 146/347 (42%), Positives = 201/347 (57%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNAG AMR L AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAGIAMRSLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRN 333
>pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral
Reaction Intermediate
Length = 427
Score = 235 bits (599), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 147/347 (42%), Positives = 202/347 (58%), Gaps = 17/347 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG PL + G +ELFLGNAGTAMRPL AA+ ++ +L G
Sbjct: 64 YTLSADRTRCEIIGNGG--PLHAE--GALELFLGNAGTAMRPLAAALCLGSNDI--VLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXX 259
PRM+ERPIG LV L+ GA + + N PP+R+ Q+
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTA 175
Query: 260 XXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
+ I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF G G +S+QGD++FA+VLEKMGA + W ++ +
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYI 294
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ T R L A+D++MN +P AMT+A ALFA G T +R+
Sbjct: 295 SCT--------RGELNAIDMDMNHIPAAAMTIATAALFAKGTTTLRN 333
>pdb|3TI2|A Chain A, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|B Chain B, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|C Chain C, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
pdb|3TI2|D Chain D, 1.90 Angstrom Resolution Crystal Structure Of N-Terminal
Domain 3- Phosphoshikimate 1-Carboxyvinyltransferase
From Vibrio Cholerae
Length = 228
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 137/236 (58%), Gaps = 8/236 (3%)
Query: 92 VTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIV 151
V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HML+AL KLG+N V
Sbjct: 1 VNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEV 60
Query: 152 EGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL 211
EG G F T +ELFLGNAGTAMRPL AA+ G+ Y+L G PRM+ERPIG L
Sbjct: 61 EGLGQAF----HTTQPLELFLGNAGTAMRPLAAALCLGQGD--YVLTGEPRMKERPIGHL 114
Query: 212 VTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNV 271
V L+Q GA ++ + N PP+RI Q+ G V
Sbjct: 115 VDALRQAGAQIEYLEQENFPPLRIQ-GTGLQAGTVTIDGSISSQFLTAFLMSAPLAQGKV 173
Query: 272 EIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327
I+I+ +L+S PY+++TL +ME+FGV V + D + F I GQ Y SPG VEGD
Sbjct: 174 TIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFVIPAGQSYVSPGQFLVEGD 228
>pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N-
Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate
Synthase
pdb|1P89|A Chain A, Substrate-Induced Structural Changes To The Isolated
N-Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate
Synthase
Length = 216
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 101 SNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160
SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++ R + G GG PL
Sbjct: 1 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGG--PL 58
Query: 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 220
+ G +ELFLGNAGTAMRPL AA+ ++ +L G PRM+ERPIG LV L+ GA
Sbjct: 59 HAE--GALELFLGNAGTAMRPLAAALCLGSNDI--VLTGEPRMKERPIGHLVDALRLGGA 114
Query: 221 DVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLI 280
+ + N PP+R+ Q+ + I I L+
Sbjct: 115 KITYLEQENYPPLRLQ--GGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLV 172
Query: 281 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVE 325
S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SPG VE
Sbjct: 173 SKPYIDITLNLMKTFGVEIENQ-HYQQFVVKGGQSYQSPGTYLVE 216
>pdb|4GFP|A Chain A, 2.7 Angstrom Resolution Structure Of 3-Phosphoshikimate 1-
Carboxyvinyltransferase (Aroa) From Coxiella Burnetii In
A Second Conformational State
Length = 462
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 150/357 (42%), Gaps = 22/357 (6%)
Query: 74 QSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDAL 133
QS A + P + +SG + +PG KS+S+R +LLAA++EG T VD L D M+ AL
Sbjct: 21 QSNAMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSAL 80
Query: 134 KKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNL 193
+++G +++ +VEG G + Q L GN+GTA+R L+ + AG
Sbjct: 81 QQMGASIQVIEDENILVVEGVG----MTGLQAPPEALDCGNSGTAIRLLSGLL--AGQPF 134
Query: 194 SYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXX 253
+ +L G ++ RP+ ++ L +GA +D N PP++I
Sbjct: 135 NTVLTGDSSLQRRPMKRIIDPLTLMGAKIDST--GNVPPLKI-YGNPRLTGIHYQLPMAS 191
Query: 254 XQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG 313
Q G I P + T +L++ F ++ + GG
Sbjct: 192 AQVKSCLLLAGLYARGKTCIT-----EPAPSRDHTERLLKHFHYTLQKDKQ--SICVSGG 244
Query: 314 QKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVT 373
K K+ + + GD SSA++F C + +L+ MGA +
Sbjct: 245 GKLKA-NDISIPGDISSAAFFIVAATITPGSAIRL-CRVGVNPTRLGVINLLKMMGADIE 302
Query: 374 WTENSVTVTGPPRDPYGRK-HLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
T + P D R L+ +D+ +++P D L + A A G T +RD
Sbjct: 303 VTHYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRD 359
>pdb|3ROI|A Chain A, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3ROI|B Chain B, 2.20 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
pdb|3SLH|A Chain A, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|B Chain B, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|C Chain C, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|3SLH|D Chain D, 1.70 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Shikimate-3-Phosphate And Glyphosate
pdb|4EGR|A Chain A, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|B Chain B, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|C Chain C, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|D Chain D, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|E Chain E, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
pdb|4EGR|F Chain F, 2.50 Angstrom Resolution Structure Of 3-Phosphoshikimate
1- Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
In Complex With Phosphoenolpyruvate
Length = 441
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 146/347 (42%), Gaps = 22/347 (6%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
P + +SG + +PG KS+S+R +LLAA++EG T VD L D M+ AL+++G +++
Sbjct: 10 PSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVI 69
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
+VEG G + Q L GN+GTA+R L+ + AG + +L G +
Sbjct: 70 EDENILVVEGVG----MTGLQAPPEALDCGNSGTAIRLLSGLL--AGQPFNTVLTGDSSL 123
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXX 263
+ RP+ ++ L +GA +D N PP++I Q
Sbjct: 124 QRRPMKRIIDPLTLMGAKIDST--GNVPPLKI-YGNPRLTGIHYQLPMASAQVKSCLLLA 180
Query: 264 XXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 323
G I P + T +L++ F ++ + GG K K+ +
Sbjct: 181 GLYARGKTCIT-----EPAPSRDHTERLLKHFHYTLQKDKQ--SICVSGGGKLKA-NDIS 232
Query: 324 VEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTG 383
+ GD SSA++F C + +L+ MGA + T +
Sbjct: 233 IPGDISSAAFFIVAATITPGSAIRL-CRVGVNPTRLGVINLLKMMGADIEVTHYTEKNEE 291
Query: 384 PPRDPYGRK-HLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
P D R L+ +D+ +++P D L + A A G T +RD
Sbjct: 292 PTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRD 338
>pdb|3TR1|A Chain A, Structure Of A 3-Phosphoshikimate
1-Carboxyvinyltransferase (Aroa) From Coxiella Burnetii
Length = 441
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 143/349 (40%), Gaps = 26/349 (7%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
P + +SG + +PG KS+S+R +LLAA++EG T VD L D + AL++ G +++
Sbjct: 10 PSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLXGADNLAXVSALQQXGASIQVI 69
Query: 144 FAMKRAIVEGCG--GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+VEG G GL Q L GN+GTA+R L+ + AG + +L G
Sbjct: 70 EDENILVVEGVGXTGL------QAPPEALDCGNSGTAIRLLSGLL--AGQPFNTVLTGDS 121
Query: 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXX 261
++ RP ++ L GA +D N PP++I Q
Sbjct: 122 SLQRRPXKRIIDPLTLXGAKIDST--GNVPPLKI-YGNPRLTGIHYQLPXASAQVKSCLL 178
Query: 262 XXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGN 321
G I P + T +L++ F ++ + GG K K+ +
Sbjct: 179 LAGLYARGKTCIT-----EPAPSRDHTERLLKHFHYTLQKDKQS--ICVSGGGKLKA-ND 230
Query: 322 AFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTV 381
+ GD SSA++F C + +L+ GA + T +
Sbjct: 231 ISIPGDISSAAFFIVAATITPGSAIRL-CRVGVNPTRLGVINLLKXXGADIEVTHYTEKN 289
Query: 382 TGPPRDPYGRK-HLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
P D R L+ +D+ +++P D L + A A G T +RD
Sbjct: 290 EEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRD 338
>pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF5|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF5|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In Unliganded State
pdb|1RF6|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
pdb|1RF6|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase In S3p-Glp Bound State
Length = 427
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 85 IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 144
IR + G + +PG KS+S+R ++ +L+EG T V ++L ED+ + + LG+ +E+
Sbjct: 7 IRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKD 66
Query: 145 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR 204
+ V+G G +A + + L +GN+GT++R ++ + AG + + G +
Sbjct: 67 GV--ITVQGVG----MAGLKAPQNALNMGNSGTSIRLISGVL--AGADFEVEMFGDDSLS 118
Query: 205 ERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236
+RP+ + LK++G + + PP+R+
Sbjct: 119 KRPMDRVTLPLKKMGVSISGQTERDLPPLRLK 150
>pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded
State
Length = 462
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 127/308 (41%), Gaps = 35/308 (11%)
Query: 88 ISGTVTLPGSKSLSNRILLLAAL----SEGTTVVDNLLSSEDIHHMLDALKKLGLNVE-- 141
+ TVT+PGSKS +NR L+LAAL G + + L S D MLDAL+ LGL V+
Sbjct: 13 VRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGV 72
Query: 142 -EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMR---PLTAAVTAAGGNLSYIL 197
+ + I G G + G AGT +R PL AA G++
Sbjct: 73 GSELTVSGRIEPGPGA------------RVDCGLAGTVLRFVPPL-----AALGSVPVTF 115
Query: 198 DGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYX 257
DG + R RPI L+ L++LG VD GT P R+ Q+
Sbjct: 116 DGDQQARGRPIAPLLDALRELGVAVD---GTGL-PFRVRGNGSLAGGTVAIDASASSQFV 171
Query: 258 XXXXXXXXXXXGNVEIEII-DKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
+ ++ L S P++ MT ++ + GV ++ S +R+ ++ G
Sbjct: 172 SGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTP-NRWQVRPGPVA 230
Query: 317 KSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376
+ +E D ++A F G S+Q +L ++ A V +
Sbjct: 231 ARRWD--IEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHAD 288
Query: 377 NSVTVTGP 384
+S+ V GP
Sbjct: 289 SSLEVRGP 296
>pdb|3RMT|A Chain A, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|B Chain B, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|C Chain C, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|D Chain D, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
Length = 455
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 29/353 (8%)
Query: 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNV 140
V+ + + GT+ +PG KS+S+R ++ AL++GTT V+ L D + +KLG+++
Sbjct: 8 VIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQKLGVSI 67
Query: 141 EEDFAMKRAIVEGCG--GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
E+ A +R V+G G GL ++ +I L +GN+GT R + ++ ++
Sbjct: 68 EQ--AEERVTVKGKGWDGL-----REPSDI-LDVGNSGTTTRLILGILSTL--PFHSVII 117
Query: 199 GVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXX 258
G + +RP+ + LK +GA +D N P+ I Q
Sbjct: 118 GDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIR--GGQLKGIDFHSPVASAQMKS 175
Query: 259 XXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKS 318
G + K + T +++E FGV +E I+GGQ
Sbjct: 176 AILLAGLRAEGKTSVTEPAK-----TRDHTERMLEAFGVNIEKDGLT--VSIEGGQMLTG 228
Query: 319 PGNAFVEGDASSASYFXXXXXXX-XXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTEN 377
+ V GD SSA++F G + + + EVL++MGA +
Sbjct: 229 Q-HVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTRAGI--LEVLKQMGATLAMENE 285
Query: 378 SVTVTGPPRD-PYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
V P D L+ V++ + +P D +AV+A A G T I+D
Sbjct: 286 RVQGGEPVADLTIETSVLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKD 338
>pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p (Partially Photolyzed)
pdb|2O0D|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p
pdb|2O0E|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
S3p And Pep
pdb|2O0X|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
Intermediate
pdb|2O0Z|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With
Product (Eps)
pdb|2O15|A Chain A, Mycobacterium Tuberculosis Epsp Synthase After Partial
Products Withdrawal
Length = 450
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 127/308 (41%), Gaps = 35/308 (11%)
Query: 88 ISGTVTLPGSKSLSNRILLLAAL----SEGTTVVDNLLSSEDIHHMLDALKKLGLNVE-- 141
+ TVT+PGSKS +NR L+LAAL G + + L S D MLDAL+ LGL V+
Sbjct: 13 VRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGV 72
Query: 142 -EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMR---PLTAAVTAAGGNLSYIL 197
+ + I G G + G AGT +R PL AA G++
Sbjct: 73 GSELTVSGRIEPGPGA------------RVDCGLAGTVLRFVPPL-----AALGSVPVTF 115
Query: 198 DGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYX 257
DG + R RPI L+ L++LG VD GT P R+ Q+
Sbjct: 116 DGDQQARGRPIAPLLDALRELGVAVD---GTGL-PFRVRGNGSLAGGTVAIDASASSQFV 171
Query: 258 XXXXXXXXXXXGNVEIEII-DKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
+ ++ L S P++ MT ++ + GV ++ S +R+ ++ G
Sbjct: 172 SGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTP-NRWQVRPGPVA 230
Query: 317 KSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376
+ +E D ++A F G S+Q +L ++ A V +
Sbjct: 231 ARRWD--IEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHAD 288
Query: 377 NSVTVTGP 384
+S+ V GP
Sbjct: 289 SSLEVRGP 296
>pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And
Glyphosate
Length = 455
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SGTV +PG KS+S+R + L+ G T + LL ED+ + A++ +G + ++
Sbjct: 18 LSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG--D 75
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
I++G G LA E L GNAGT R V + ++I D + +RP
Sbjct: 76 TWIIDGVGNGGLLAP----EAPLDFGNAGTGCRLTMGLVGVYDFDSTFIGDA--SLTKRP 129
Query: 208 IGDLVTGLKQLGADVDCILGTNCP 231
+G ++ L+++G V G P
Sbjct: 130 MGRVLNPLREMGVQVKSEDGDRLP 153
>pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl
Tetrahedral Reaction Intermediate Analog
Length = 445
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SGTV +PG KS+S+R + L+ G T + LL ED+ + A++ +G + ++
Sbjct: 13 LSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG--D 70
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
I++G G LA E L GNAGT R V + ++I D + +RP
Sbjct: 71 TWIIDGVGNGGLLAP----EAPLDFGNAGTGCRLTMGLVGVYDFDSTFIGDA--SLTKRP 124
Query: 208 IGDLVTGLKQLGADVDCILGTNCP 231
+G ++ L+++G V G P
Sbjct: 125 MGRVLNPLREMGVQVKSEDGDRLP 148
>pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded)
pdb|2GG6|A Chain A, Cp4 Epsp Synthase Liganded With S3p
pdb|2GGA|A Chain A, Cp4 Epsp Synthase Liganded With S3p And Glyphosate
Length = 455
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SGTV +PG KS+S+R + L+ G T + LL ED+ + A++ +G + ++
Sbjct: 18 LSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG--D 75
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
I++G G LA E L GNA T R V + ++I D + +RP
Sbjct: 76 TWIIDGVGNGGLLAP----EAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDA--SLTKRP 129
Query: 208 IGDLVTGLKQLGADVDCILGTNCP 231
+G ++ L+++G V G P
Sbjct: 130 MGRVLNPLREMGVQVKSEDGDRLP 153
>pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral
Intermediate Analog
pdb|2PQC|A Chain A, Cp4 Epsps Liganded With (R)-Phosphonate Tetrahedral
Reaction Intermediate Analog
Length = 445
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SGTV +PG KS+S+R + L+ G T + LL ED+ + A++ +G + ++
Sbjct: 13 LSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG--D 70
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
I++G G LA E L GNA T R V + ++I D + +RP
Sbjct: 71 TWIIDGVGNGGLLAP----EAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDA--SLTKRP 124
Query: 208 IGDLVTGLKQLGADVDCILGTNCP 231
+G ++ L+++G V G P
Sbjct: 125 MGRVLNPLREMGVQVKSEDGDRLP 148
>pdb|3ISS|A Chain A, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|B Chain B, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|C Chain C, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|D Chain D, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|E Chain E, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|F Chain F, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|G Chain G, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|H Chain H, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|I Chain I, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|J Chain J, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|K Chain K, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|L Chain L, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
Length = 418
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 87 EISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 146
++ G VT+ G+K+ + IL A L+E + N+ +D+ + L +LG VE D ++
Sbjct: 11 KLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERDGSV 70
Query: 147 K---RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
R + C + L K I A+ PL A G L G +
Sbjct: 71 HIDARDVNVFCAP-YDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGCTI 117
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL+QLGA +
Sbjct: 118 GARPVDLHISGLEQLGATI 136
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
>pdb|3SWE|A Chain A, Haemophilus Influenzae Mura In Complex With
Udp-N-Acetylmuramic Acid And Covalent Adduct Of Pep With
Cys117
Length = 424
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED---- 143
+SG+V + G+K+ + IL A L+ + N+ +DI L L++LG+ V+ D
Sbjct: 12 LSGSVNISGAKNAALPILFAAILATEPVKLTNVPELKDIETTLKILRQLGVVVDRDATGA 71
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
+ + + + L K I A+ PL A G +S L G +
Sbjct: 72 VLLDASNINHFTAPYELVKTMRASI--------WALAPLVARFHQ--GQVS--LPGGXSI 119
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL++LGAD+
Sbjct: 120 GARPVDLHISGLEKLGADI 138
>pdb|1A2N|A Chain A, Structure Of The C115a Mutant Of Mura Complexed With The
Fluorinated Analog Of The Reaction Tetrahedral
Intermediate
Length = 419
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 87 EISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 146
++ G VT+ G+K+ + IL A L+E + N+ +D+ + L +LG VE + ++
Sbjct: 11 KLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSV 70
Query: 147 K---RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
R + C + L K I A+ PL A G L G +
Sbjct: 71 HIDARDVNVFCAP-YDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGATI 117
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL+QLGA +
Sbjct: 118 GARPVDLHISGLEQLGATI 136
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
>pdb|2RL1|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine Enolpyruvyl
Transferase From Haemophilus Influenzae In Complex With
Udp-N-Acetylglucosamine
pdb|2RL2|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine Enolpyruvyl
Transferase From Haemophilus Influenzae In Complex With
Udp-n-acetylglucosamine And Fosfomycin
Length = 424
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED---- 143
+SG+V + G+K+ + IL A L+ + N+ +DI L L++LG+ V+ D
Sbjct: 12 LSGSVNISGAKNAALPILFAAILATEPVKLTNVPELKDIETTLKILRQLGVVVDRDATGA 71
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
+ + + + L K I A+ PL A G +S L G +
Sbjct: 72 VLLDASNINHFTAPYELVKTMRASI--------WALAPLVARFHQ--GQVS--LPGGCSI 119
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL++LGAD+
Sbjct: 120 GARPVDLHISGLEKLGADI 138
>pdb|1UAE|A Chain A, Structure Of Udp-N-Acetylglucosamine Enolpyruvyl
Transferase
Length = 419
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 87 EISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 146
++ G VT+ G+K+ + IL A L+E + N+ +D+ + L +LG VE + ++
Sbjct: 11 KLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERNGSV 70
Query: 147 K---RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
R + C + L K I A+ PL A G L G +
Sbjct: 71 HIDARDVNVFCAP-YDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGCTI 117
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL+QLGA +
Sbjct: 118 GARPVDLHISGLEQLGATI 136
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
>pdb|1NAW|A Chain A, Enolpyruvyl Transferase
pdb|1NAW|B Chain B, Enolpyruvyl Transferase
Length = 419
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
P R + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG VE +
Sbjct: 9 PTR-LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERN 67
Query: 144 FA--MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ + + V + L K I A+ PL A G L G
Sbjct: 68 GSVWIDASNVNNFSAPYDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGC 115
Query: 202 RMRERPIGDLVTGLKQLGADV 222
+ RP+ + GL++LGA++
Sbjct: 116 AIGARPVDLHIFGLEKLGAEI 136
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
>pdb|3KQJ|A Chain A, Mura Binary Complex With Udp-N-Acetylglucosamine
pdb|3KR6|A Chain A, Mura Dead-End Complex With Fosfomycin
Length = 419
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 87 EISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 146
++ G VT+ G+K+ + IL A L+E + N+ +D+ + L +LG VE ++
Sbjct: 11 KLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERXGSV 70
Query: 147 K---RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
R + C + L K I A+ PL A G L G +
Sbjct: 71 HIDARDVNVFCAP-YDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGCTI 117
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL+QLGA +
Sbjct: 118 GARPVDLHISGLEQLGATI 136
>pdb|2Z2C|A Chain A, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|B Chain B, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|C Chain C, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|D Chain D, Mura Inhibited By Unag-Cnicin Adduct
Length = 423
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 87 EISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 146
++ G VT+ G+K+ + IL A L+E + N+ +D+ + L +LG VE ++
Sbjct: 11 KLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERXGSV 70
Query: 147 K---RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
R + C + L K I A+ PL A G L G +
Sbjct: 71 HIDARDVNVFCAP-YDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGCTI 117
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL+QLGA +
Sbjct: 118 GARPVDLHISGLEQLGATI 136
>pdb|3SWD|A Chain A, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|B Chain B, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|C Chain C, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|D Chain D, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|E Chain E, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|F Chain F, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|G Chain G, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|H Chain H, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|I Chain I, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|J Chain J, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|K Chain K, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|L Chain L, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
Length = 418
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 87 EISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAM 146
++ G VT+ G+K+ + IL A L+E + N+ +D+ + L +LG VE ++
Sbjct: 11 KLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDVDTSMKLLSQLGAKVERXGSV 70
Query: 147 K---RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
R + C + L K I A+ PL A G L G +
Sbjct: 71 HIDARDVNVFCAP-YDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGXTI 117
Query: 204 RERPIGDLVTGLKQLGADV 222
RP+ ++GL+QLGA +
Sbjct: 118 GARPVDLHISGLEQLGATI 136
>pdb|1Q3G|A Chain A, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|B Chain B, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|C Chain C, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|D Chain D, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|E Chain E, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|F Chain F, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|G Chain G, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|H Chain H, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|I Chain I, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|J Chain J, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|K Chain K, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|L Chain L, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|W Chain W, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|X Chain X, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Y Chain Y, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Z Chain Z, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
Length = 419
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE- 142
P R + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG VE
Sbjct: 9 PTR-LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERX 67
Query: 143 -DFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ + V + L K I A+ PL A G L G
Sbjct: 68 GSVWIDASNVNNFSAPYDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGC 115
Query: 202 RMRERPIGDLVTGLKQLGADV 222
+ RP+ + GL++LGA++
Sbjct: 116 AIGARPVDLHIFGLEKLGAEI 136
>pdb|1EJC|A Chain A, Crystal Structure Of Unliganded Mura (Type2)
pdb|1EJD|A Chain A, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EJD|B Chain B, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EYN|A Chain A, Structure Of Mura Liganded With The Extrinsic Fluorescence
Probe Ans
pdb|1YBG|A Chain A, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|B Chain B, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|C Chain C, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|D Chain D, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|3KQA|A Chain A, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|B Chain B, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|C Chain C, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|D Chain D, Mura Dead-End Complex With Terreic Acid
pdb|3LTH|A Chain A, E. Cloacae Mura Dead-End Complex With Unag And Fosfomycin
pdb|3SPB|A Chain A, Unliganded E. Cloacae Mura
pdb|3SPB|B Chain B, Unliganded E. Cloacae Mura
pdb|3SPB|C Chain C, Unliganded E. Cloacae Mura
pdb|3SPB|D Chain D, Unliganded E. Cloacae Mura
pdb|3SWQ|A Chain A, E. Cloacae Mura In Complex With Enolpyruvyl-Unag
pdb|3UPK|A Chain A, E. Cloacae Mura In Complex With Unag
Length = 419
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE- 142
P R + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG VE
Sbjct: 9 PTR-LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERX 67
Query: 143 -DFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ + V + L K I A+ PL A G L G
Sbjct: 68 GSVWIDASNVNNFSAPYDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGC 115
Query: 202 RMRERPIGDLVTGLKQLGADV 222
+ RP+ + GL++LGA++
Sbjct: 116 AIGARPVDLHIFGLEKLGAEI 136
>pdb|3VCY|A Chain A, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|B Chain B, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|C Chain C, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin.
pdb|3VCY|D Chain D, Structure Of Mura (Udp-N-Acetylglucosamine Enolpyruvyl
Transferase), From Vibrio Fischeri In Complex With
Substrate Udp-N- Acetylglucosamine And The Drug
Fosfomycin
Length = 430
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 86 REISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFA 145
+ +SG VT+ G+K+ + IL + L+E V N+ D+ ++ LK+LG V + +
Sbjct: 11 KPLSGEVTISGAKNAALPILFASLLAEEPVEVANVPKLRDVDTTMELLKRLGAEVSRNGS 70
Query: 146 MK---RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202
+ + + C + L K I A+ PL A G L G
Sbjct: 71 VHIDASGVNDFCAP-YDLVKTMRASI--------WALGPLVARF----GKGQVSLPGGCA 117
Query: 203 MRERPIGDLVTGLKQLGADV 222
+ RP+ + GL+QLGA +
Sbjct: 118 IGARPVDLHIHGLEQLGATI 137
>pdb|3V4T|A Chain A, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|B Chain B, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|C Chain C, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|D Chain D, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|E Chain E, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|F Chain F, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|G Chain G, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|H Chain H, E. Cloacae C115d Mura Liganded With Unag
pdb|3V5V|A Chain A, Unliganded E.Cloacae C115d Mura
pdb|3V5V|B Chain B, Unliganded E.Cloacae C115d Mura
pdb|3V5V|C Chain C, Unliganded E.Cloacae C115d Mura
pdb|3V5V|D Chain D, Unliganded E.Cloacae C115d Mura
Length = 419
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE- 142
P R + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG VE
Sbjct: 9 PTR-LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERX 67
Query: 143 -DFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ + V + L K I A+ PL A G L G
Sbjct: 68 GSVWIDASNVNNFSAPYDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGD 115
Query: 202 RMRERPIGDLVTGLKQLGADV 222
+ RP+ + GL++LGA++
Sbjct: 116 AIGARPVDLHIFGLEKLGAEI 136
>pdb|3SWA|A Chain A, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
pdb|3SWA|B Chain B, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
P R + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG VE
Sbjct: 9 PTR-LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVE 65
>pdb|3SU9|A Chain A, E. Cloacae Mura In Complex With Udp-N-Acetylmuramic Acid
And Covalent Adduct Of Pep With Cys115
pdb|3SWI|A Chain A, E. Cloacae Mura In Complex With
Enolpyruvyl-Udp-N-Acetylgalactosamine And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE- 142
P R + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG VE
Sbjct: 9 PTR-LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERX 67
Query: 143 -DFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ + V + L K I A+ PL A G L G
Sbjct: 68 GSVWIDASNVNNFSAPYDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGX 115
Query: 202 RMRERPIGDLVTGLKQLGADV 222
+ RP+ + GL++LGA++
Sbjct: 116 AIGARPVDLHIFGLEKLGAEI 136
>pdb|1DLG|A Chain A, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1DLG|B Chain B, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1RYW|A Chain A, C115s Mura Liganded With Reaction Products
pdb|1RYW|B Chain B, C115s Mura Liganded With Reaction Products
pdb|1RYW|C Chain C, C115s Mura Liganded With Reaction Products
pdb|1RYW|D Chain D, C115s Mura Liganded With Reaction Products
pdb|1RYW|E Chain E, C115s Mura Liganded With Reaction Products
pdb|1RYW|F Chain F, C115s Mura Liganded With Reaction Products
pdb|1RYW|G Chain G, C115s Mura Liganded With Reaction Products
pdb|1RYW|H Chain H, C115s Mura Liganded With Reaction Products
Length = 419
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
A + +++ ++ + ++SG + S ++L ++EGTTVVD + + + +
Sbjct: 343 AHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERI 402
Query: 131 -DALKKLGLNVE 141
D L+ LG N+E
Sbjct: 403 EDKLRALGANIE 414
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE- 142
P R + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG VE
Sbjct: 9 PTR-LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERX 67
Query: 143 -DFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ + V + L K I A+ PL A G L G
Sbjct: 68 GSVWIDASNVNNFSAPYDLVKTMRASI--------WALGPLVARF----GQGQVSLPGGS 115
Query: 202 RMRERPIGDLVTGLKQLGADV 222
+ RP+ + GL++LGA++
Sbjct: 116 AIGARPVDLHIFGLEKLGAEI 136
>pdb|2X3H|A Chain A, Coliphage K5a Lyase
pdb|2X3H|B Chain B, Coliphage K5a Lyase
pdb|2X3H|C Chain C, Coliphage K5a Lyase
Length = 542
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 131 DALKKLGLNVE-EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA 189
DA + G+ VE D + ++ GC G L ++QT I F+G A + + +A
Sbjct: 314 DARQAHGVTVEGSDNVINNVLMSGCDGTNSLGQRQTATIARFIGTANNNYASVFPSYSAT 373
Query: 190 G 190
G
Sbjct: 374 G 374
>pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura)
From Listeria Monocytogenes Egd-E
Length = 454
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 365 LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADG 420
LE+MG ++ EN + V GP + L+AVDV P D+ + V+ + ++G
Sbjct: 291 LEEMGVQIIEEENGIRVIGPDK-------LKAVDVKTMPHPGFPTDMQSQMMVIQMLSEG 343
Query: 421 PTAIRD 426
+ + +
Sbjct: 344 TSIMTE 349
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 28/129 (21%)
Query: 101 SNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG----- 155
+ I++ A L+EGTTV++N+ +I + + L ++G A V G G
Sbjct: 191 TQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMG-----------ARVIGAGTEVIR 239
Query: 156 --GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVT 213
G+ L + I + AGT M + AA+T GGN+ I D VP I L+
Sbjct: 240 IEGVKELTATEHSIIPDRI-EAGTFM--IAAAIT--GGNV-LIEDAVPEH----ISSLIA 289
Query: 214 GLKQLGADV 222
L+++G +
Sbjct: 290 KLEEMGVQI 298
>pdb|1E4C|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant S71q
Length = 215
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTFGLRIEE 215
>pdb|1E48|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73qY113FY209F
Length = 215
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTFGLRIEE 215
>pdb|1E4A|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant Del(27)
Length = 214
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 129 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 186
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 187 TDPVPVLSDEEIAVVLEKFKTFGLRIEE 214
>pdb|1E4B|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29q
Length = 215
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTFGLRIEE 215
>pdb|1DZV|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113fY209F
Length = 215
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTFGLRIEE 215
>pdb|1DZU|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant T26a
Length = 215
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>pdb|1DZZ|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113f
Length = 215
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>pdb|1E47|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73q
Length = 215
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>pdb|1E49|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29lS71A
Length = 215
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>pdb|1DZW|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant F131a
Length = 215
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TAGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>pdb|1FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T
pdb|2FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T With Cobalt
pdb|3FUA|A Chain A, L-Fuculose-1-Phosphate Aldolase Crystal Form K
pdb|4FUA|A Chain A, L-fuculose-1-phosphate Aldolase Complex With Pgh
Length = 215
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>pdb|1E46|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73s
Length = 215
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 85 IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 144
I E++ +KS R+LL A +S G ++DN E + LD + L + +
Sbjct: 134 IHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSW 193
Query: 145 AMKRAIVEGCGGLFPLAK 162
++ ++ G PL+K
Sbjct: 194 --EKPLITGHNS--PLSK 207
>pdb|1DZX|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant R212a
Length = 215
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA+ +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKAT--LLQHHGLIACEVNLEKALWLAHEVEVLAQLYLTTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLAIEE 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,594,044
Number of Sequences: 62578
Number of extensions: 373049
Number of successful extensions: 1075
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 100
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)