Query 014155
Match_columns 429
No_of_seqs 181 out of 1421
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:22:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0128 AroA 5-enolpyruvylshik 100.0 7.3E-59 1.6E-63 467.9 37.5 322 85-428 10-334 (428)
2 PLN02338 3-phosphoshikimate 1- 100.0 2.2E-54 4.8E-59 448.0 42.7 349 79-427 3-351 (443)
3 PRK11860 bifunctional 3-phosph 100.0 4.5E-53 9.8E-58 456.3 41.8 335 77-428 4-341 (661)
4 PRK11861 bifunctional prephena 100.0 8.9E-53 1.9E-57 455.1 40.6 345 71-428 234-581 (673)
5 KOG0692 Pentafunctional AROM p 100.0 4.8E-54 1E-58 424.7 21.5 419 2-427 14-450 (595)
6 PF00275 EPSP_synthase: EPSP s 100.0 4.1E-52 8.9E-57 428.0 27.7 327 82-428 1-331 (419)
7 TIGR01356 aroA 3-phosphoshikim 100.0 1.4E-47 2.9E-52 393.2 39.5 315 90-427 1-316 (409)
8 cd01556 EPSP_synthase EPSP syn 100.0 4.5E-45 9.8E-50 374.0 39.5 317 88-427 1-318 (409)
9 cd01554 EPT-like Enol pyruvate 100.0 3.6E-43 7.8E-48 360.3 39.9 315 88-428 1-319 (408)
10 PRK02427 3-phosphoshikimate 1- 100.0 4.6E-43 9.9E-48 362.4 39.4 323 82-427 7-342 (435)
11 COG0766 MurA UDP-N-acetylgluco 100.0 2.5E-43 5.5E-48 344.8 33.2 324 77-428 1-329 (421)
12 PRK14806 bifunctional cyclohex 100.0 3.3E-41 7.1E-46 369.8 38.9 325 75-427 299-637 (735)
13 PRK09369 UDP-N-acetylglucosami 100.0 6.6E-41 1.4E-45 344.7 37.0 322 77-426 1-326 (417)
14 TIGR01072 murA UDP-N-acetylglu 100.0 4E-39 8.7E-44 331.2 37.5 322 77-427 1-327 (416)
15 cd01555 UdpNAET UDP-N-acetylgl 100.0 2.2E-39 4.7E-44 331.5 35.3 311 88-426 1-316 (400)
16 COG0128 AroA 5-enolpyruvylshik 100.0 2.4E-39 5.2E-44 326.5 32.4 321 78-428 70-408 (428)
17 PRK12830 UDP-N-acetylglucosami 100.0 1.6E-38 3.5E-43 326.9 36.6 319 77-426 1-324 (417)
18 TIGR01356 aroA 3-phosphoshikim 100.0 1.4E-36 3E-41 311.7 32.2 309 90-428 70-390 (409)
19 PRK02427 3-phosphoshikimate 1- 100.0 3.4E-34 7.4E-39 296.2 32.7 311 92-428 87-414 (435)
20 PRK09369 UDP-N-acetylglucosami 100.0 4.4E-33 9.5E-38 286.6 30.7 290 100-428 94-394 (417)
21 PLN02338 3-phosphoshikimate 1- 100.0 1.4E-32 3.1E-37 285.0 32.8 312 90-428 92-424 (443)
22 PRK11861 bifunctional prephena 100.0 3.1E-32 6.7E-37 295.1 33.4 305 94-428 327-654 (673)
23 PRK12830 UDP-N-acetylglucosami 100.0 4.4E-32 9.6E-37 279.1 30.8 286 105-428 97-392 (417)
24 cd01556 EPSP_synthase EPSP syn 100.0 1.4E-31 3.1E-36 274.1 32.6 322 78-428 58-393 (409)
25 PF00275 EPSP_synthase: EPSP s 100.0 2.5E-32 5.4E-37 281.2 24.2 307 91-428 85-406 (419)
26 cd01555 UdpNAET UDP-N-acetylgl 100.0 4.6E-31 9.9E-36 270.1 31.9 276 114-428 99-384 (400)
27 TIGR01072 murA UDP-N-acetylglu 100.0 3E-31 6.6E-36 272.7 30.5 309 79-428 70-394 (416)
28 cd01554 EPT-like Enol pyruvate 100.0 3.5E-29 7.7E-34 256.7 33.9 303 91-428 76-392 (408)
29 PRK11860 bifunctional 3-phosph 100.0 3.9E-30 8.5E-35 278.1 28.1 311 91-428 89-418 (661)
30 COG0766 MurA UDP-N-acetylgluco 100.0 1.2E-27 2.7E-32 234.7 27.7 267 122-428 120-395 (421)
31 PRK14806 bifunctional cyclohex 99.9 2.9E-25 6.3E-30 243.9 30.4 303 91-428 388-710 (735)
32 KOG0692 Pentafunctional AROM p 99.9 5.1E-21 1.1E-25 190.7 16.8 310 96-427 188-528 (595)
33 cd01553 EPT_RTPC-like This dom 99.5 2E-12 4.4E-17 121.2 15.9 155 249-428 7-195 (211)
34 cd01553 EPT_RTPC-like This dom 99.1 3.5E-10 7.6E-15 106.1 10.5 97 324-428 6-116 (211)
35 PF01137 RTC: RNA 3'-terminal 96.6 0.24 5.2E-06 47.0 17.7 186 102-301 14-226 (228)
36 COG0430 RCL1 RNA 3'-terminal p 96.3 0.23 4.9E-06 49.3 16.4 115 103-224 19-150 (341)
37 cd00874 RNA_Cyclase_Class_II R 94.6 2.8 6E-05 42.0 17.6 118 100-224 12-146 (326)
38 TIGR03399 RNA_3prim_cycl RNA 3 94.0 4 8.6E-05 40.9 17.1 118 100-224 14-148 (326)
39 TIGR03400 18S_RNA_Rcl1p 18S rR 93.1 4.6 0.0001 41.0 16.1 114 104-224 12-145 (360)
40 PF01137 RTC: RNA 3'-terminal 92.8 6.6 0.00014 37.3 15.8 157 212-375 49-227 (228)
41 PRK04204 RNA 3'-terminal-phosp 92.7 6.5 0.00014 39.7 16.4 118 100-224 16-150 (343)
42 cd00875 RNA_Cyclase_Class_I RN 92.2 5 0.00011 40.5 14.9 118 97-221 9-143 (341)
43 COG0430 RCL1 RNA 3'-terminal p 91.8 3.5 7.6E-05 41.1 12.8 88 212-302 53-151 (341)
44 cd00295 RNA_Cyclase RNA 3' pho 90.6 5.5 0.00012 40.2 13.3 118 100-224 12-146 (338)
45 KOG3980 RNA 3'-terminal phosph 89.1 14 0.0003 36.9 14.1 126 90-223 5-147 (361)
46 TIGR03400 18S_RNA_Rcl1p 18S rR 80.2 41 0.00089 34.2 13.5 119 254-374 6-145 (360)
47 TIGR03399 RNA_3prim_cycl RNA 3 79.8 44 0.00094 33.5 13.4 88 212-301 51-148 (326)
48 cd00295 RNA_Cyclase RNA 3' pho 75.7 19 0.00041 36.3 9.5 85 333-425 15-113 (338)
49 cd00875 RNA_Cyclase_Class_I RN 73.0 98 0.0021 31.3 13.9 115 254-371 10-143 (341)
50 PRK04204 RNA 3'-terminal-phosp 68.0 88 0.0019 31.6 12.2 119 254-375 14-151 (343)
51 cd00874 RNA_Cyclase_Class_II R 65.5 1.5E+02 0.0033 29.7 14.1 118 254-374 10-146 (326)
52 COG2200 Rtn c-di-GMP phosphodi 46.2 2.5E+02 0.0054 26.8 10.9 104 259-374 110-232 (256)
53 PF07833 Cu_amine_oxidN1: Copp 37.3 36 0.00079 26.5 3.0 78 129-227 9-87 (93)
54 PHA02627 hypothetical protein; 35.9 26 0.00056 25.9 1.7 25 121-145 32-56 (73)
55 TIGR00330 glpX fructose-1,6-bi 34.9 4.6E+02 0.01 26.1 10.6 137 76-223 118-263 (321)
56 PF06076 Orthopox_F14: Orthopo 33.7 30 0.00064 25.6 1.7 26 120-145 31-56 (73)
57 PF03484 B5: tRNA synthetase B 32.4 62 0.0013 24.4 3.4 26 359-384 22-48 (70)
58 COG2101 SPT15 TATA-box binding 30.9 76 0.0017 28.8 4.2 56 240-303 41-97 (185)
59 PRK10850 PTS system phosphohis 30.5 2.7E+02 0.0059 21.9 7.6 80 193-294 4-83 (85)
60 PHA02780 hypothetical protein; 30.2 37 0.0008 25.1 1.7 25 121-145 32-56 (73)
61 smart00874 B5 tRNA synthetase 29.2 1E+02 0.0022 22.9 4.2 26 359-384 22-49 (71)
62 KOG3980 RNA 3'-terminal phosph 28.7 6.3E+02 0.014 25.6 13.8 118 254-373 12-147 (361)
63 PF08286 Spc24: Spc24 subunit 24.5 2.1E+02 0.0046 23.9 5.7 50 212-261 64-114 (118)
64 PRK13561 putative diguanylate 24.4 5.9E+02 0.013 27.6 10.7 111 258-374 507-630 (651)
65 PRK07394 hypothetical protein; 23.7 2.6E+02 0.0057 28.1 7.2 150 123-298 58-226 (342)
66 COG0602 NrdG Organic radical a 22.2 1.4E+02 0.003 28.0 4.5 35 192-226 72-106 (212)
67 PRK10060 RNase II stability mo 22.1 9.4E+02 0.02 26.4 11.8 95 268-374 524-637 (663)
68 COG1494 GlpX Fructose-1,6-bisp 22.1 7.8E+02 0.017 24.4 9.9 136 77-223 120-263 (332)
69 COG0547 TrpD Anthranilate phos 21.8 3E+02 0.0064 27.8 7.0 107 248-376 30-137 (338)
70 PF13541 ChlI: Subunit ChlI of 20.7 1.5E+02 0.0032 25.2 3.9 63 345-419 12-75 (121)
71 TIGR01245 trpD anthranilate ph 20.3 2.3E+02 0.005 28.3 5.9 84 123-224 46-129 (330)
72 PRK11829 biofilm formation reg 20.1 9.1E+02 0.02 26.1 11.1 103 264-374 518-635 (660)
73 PRK12388 fructose-1,6-bisphosp 20.1 4.8E+02 0.01 26.1 7.8 102 76-187 118-220 (321)
No 1
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-59 Score=467.87 Aligned_cols=322 Identities=43% Similarity=0.654 Sum_probs=284.2
Q ss_pred CCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCC
Q 014155 85 IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQ 164 (429)
Q Consensus 85 ~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~ 164 (429)
..+++|+|.+|||||++||+|++|+|++|+++|+|++.++|+..+++++++||++|+.++ ..++|+|.++.+..+
T Consensus 10 ~~~l~G~v~~PgSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~~~~~~--- 84 (428)
T COG0128 10 PSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGGELKEP--- 84 (428)
T ss_pred CCccceEEECCCCccHHHHHHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCCCcCCC---
Confidence 356899999999999999999999999999999999999999999999999999999755 589999987533333
Q ss_pred CCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCe
Q 014155 165 TGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (429)
Q Consensus 165 ~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~ 244 (429)
...+++|||||++||++++++.. .++.++++|+.+|++||+.++++.|+++|++|+..++++++|+.|+|+ +.++
T Consensus 85 --~~~l~~GnSGTt~R~l~glla~~-~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~Pl~i~G~--~~~~ 159 (428)
T COG0128 85 --PAVLDCGNSGTTLRLLTGLLALG-SPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTIKGG--LKGG 159 (428)
T ss_pred --CceeeeccchhHHHHHHHHHhcC-CCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcCCEEEECC--CCCc
Confidence 46899999999999999988752 358899999999999999999999999999999877667899999996 7788
Q ss_pred eEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceee
Q 014155 245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFV 324 (429)
Q Consensus 245 ~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v 324 (429)
.+++++++||||++++||+|++..+..++....+..|++|+++|+++|++||++|+.++. .|+|+|+|++. +.+|.|
T Consensus 160 ~i~i~~~~SSq~vsslL~~a~l~~~~~~~~~~~~~~s~~yid~T~~mL~~FGv~v~~~~~--~~~i~~g~~~~-~~~~~V 236 (428)
T COG0128 160 EVEIDGPVSSQQVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEGY--RFYIPGGQKLT-PGDYDV 236 (428)
T ss_pred eEEEeccchHHHHHHHHHHHhhcCCCcEEEecCccCCccHHHHHHHHHHHcCCeEEeecc--EEEECCCcccc-CceEEc
Confidence 999999999999999999999887444443333467999999999999999999999863 79999998876 899999
Q ss_pred cCChhhHHHHHHHHHcc-CCE-EEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeE-EEeCCCCCCCCCCCccceEEeC
Q 014155 325 EGDASSASYFVAGAAVT-GGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV-TVTGPPRDPYGRKHLRAVDVNM 401 (429)
Q Consensus 325 ~~D~s~a~~~lalAa~~-~g~-v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i-~I~g~~~~~~~~~~L~g~~v~~ 401 (429)
|+|+|+|+||+++|+++ +.+ ++++|+..+ ++|..++++|++||++|++.+++. +|.+. ..|+|++||+
T Consensus 237 pgD~SSAafflaAaai~~~~~~i~~~~v~~~--~~~~~~~~vl~~MGa~i~~~~~~~l~V~~~-------~~l~gi~vd~ 307 (428)
T COG0128 237 PGDYSSAAFFLAAAAITPRSTGITLKNVQPN--PTDKGILDVLEKMGADIEIGDDSVLRVRGS-------GELKGIEVDM 307 (428)
T ss_pred CCChhhHHHHHHHHHhcCCCceeeeccCCcC--cchhHHHHHHHHcCCeEEEccCceEEEeec-------CCccCeEeCc
Confidence 99999999999999998 556 777776542 345778899999999999998885 88875 3599999999
Q ss_pred CCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 402 NKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 402 ~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+++||++|++|++|+||+|+|+|+|+.
T Consensus 308 ~~~pD~~p~lAvlAa~A~g~t~I~n~~ 334 (428)
T COG0128 308 DDMPDLAPTLAVLAAFAEGTTRIRNAE 334 (428)
T ss_pred ccCchHHHHHHHHHHhcCCCeEEEchH
Confidence 999999999999999999999999974
No 2
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=100.00 E-value=2.2e-54 Score=448.01 Aligned_cols=349 Identities=86% Similarity=1.300 Sum_probs=301.0
Q ss_pred eEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCc
Q 014155 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLF 158 (429)
Q Consensus 79 ~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~ 158 (429)
.+.|.|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++++++++...++|+|.++.+
T Consensus 3 ~~~v~~~~~~~g~i~~p~sKs~~~r~l~~a~la~~~s~i~~~~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~i~~~~~~~ 82 (443)
T PLN02338 3 EITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTLGLNVEEDSENNRAVVEGCGGKF 82 (443)
T ss_pred ceEecCCCccceEEEcCCcHHHHHHHHHHHHhCCCCEEEcCCCcCHHHHHHHHHHHHcCCeEEecCCCCeEEEEecCCCc
Confidence 36777777899999999999999999999999999999999999999999999999999999986544678899887544
Q ss_pred CCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecC
Q 014155 159 PLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK 238 (429)
Q Consensus 159 ~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~ 238 (429)
+.+..+.....+++||||+++|+|+|+++++..+++++++|+++|++|||.+|+++|++||++|+..++.+++|++|+|+
T Consensus 83 ~~~~~~~~~~~i~~g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~~~~~~~pi~i~g~ 162 (443)
T PLN02338 83 PVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAA 162 (443)
T ss_pred CCcccccccceEEcCCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEEEcCCCCcCCEEEECC
Confidence 32210000247999999999999999888754568999999999999999999999999999998755556789999986
Q ss_pred CCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccC
Q 014155 239 GGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKS 318 (429)
Q Consensus 239 ~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~ 318 (429)
++++++++++++|+|+||++++++||+++.|+++|++.++..+.||++.|+++|++||++|+..+++..|+|.|++.|+.
T Consensus 163 ~~l~~~~~~i~g~~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p~~~~tl~~L~~~G~~i~~~~~~~~i~i~~~~~l~~ 242 (443)
T PLN02338 163 GGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKYKS 242 (443)
T ss_pred CCCCCceEEECCCCchHHHHHHHHHHhcCCCCcEEEECCCCCCccHHHHHHHHHHHcCCeEEecCCceEEEEcCCccccC
Confidence 56888999999999999999999999999999999987666789999999999999999999765434688987655653
Q ss_pred CcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceE
Q 014155 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVD 398 (429)
Q Consensus 319 ~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~ 398 (429)
+.++.+++|++++++|++++++++|+++++|+...+.|+|..++++|++||++|++.++.++|.+.+........+++++
T Consensus 243 ~~~~~i~~D~ssa~~~la~a~~~~g~v~i~~~~~~~~~~d~~~l~~L~~mGa~v~~~~~~i~i~~~~~~~~~~~~l~~~~ 322 (443)
T PLN02338 243 PGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTENSVTVTGPPRDAFGGKHLKAID 322 (443)
T ss_pred CCeEEeCCCHHHHHHHHHHHHhcCCeEEECCCCCCCCcchhHHHHHHHHcCCeEEEcCCeEEEcCCcccccccCCccceE
Confidence 56889999999999999999999999999999988899898999999999999999889999976531101112588999
Q ss_pred EeCCCCChHHHHHHHHHHcCCCcEEEecc
Q 014155 399 VNMNKMPDVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 399 v~~~~~pr~am~lav~al~A~G~s~I~~a 427 (429)
+|++++||++|+++++|++++|+++|+|+
T Consensus 323 ~d~~~~~d~~~~la~aa~~a~g~s~I~~~ 351 (443)
T PLN02338 323 VNMNKMPDVAMTLAVVALFADGPTAIRDV 351 (443)
T ss_pred ECcccChhHHHHHHHHHHhCCCcEEEeCc
Confidence 99999999999999999999999999975
No 3
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=100.00 E-value=4.5e-53 Score=456.27 Aligned_cols=335 Identities=52% Similarity=0.815 Sum_probs=295.5
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCC
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg 156 (429)
|..+.+.|...+.|+|.+|||||+++|+|++|+|++|+++|+|.+.++|+..++++|++||++|++++ ..++|+|+++
T Consensus 4 ~~~~~v~p~~~l~G~i~~pgsKs~s~R~l~lAaLa~g~s~i~~~l~s~D~~~~l~aL~~LGa~i~~~~--~~i~I~g~g~ 81 (661)
T PRK11860 4 TEFLDLPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVEQLG--DTYRITGLGG 81 (661)
T ss_pred ccceeecCCCcccEEEEcCCCHHHHHHHHHHHHhCCCCEEEccCCccHHHHHHHHHHHHcCCEEEecC--CEEEEECCCC
Confidence 55677888777899999999999999999999999999999999999999999999999999998765 3688998764
Q ss_pred CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEe
Q 014155 157 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236 (429)
Q Consensus 157 ~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~ 236 (429)
.++.+ ...+++||+|+++|+|++++.. .++.++++|+.+|++|||.+|+++|++||++|+..++++++|++|+
T Consensus 82 ~l~~~-----~~~i~~g~sGtt~r~Ll~~~al--~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~~~~~~g~~pi~I~ 154 (661)
T PRK11860 82 QFPVK-----QADLFLGNAGTAMRPLTAALAL--LGGEYELSGVPRMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIG 154 (661)
T ss_pred CcCCC-----CceEEeCCchHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEEcCCCCcccEEEE
Confidence 44322 3568999999999999987665 3678899999999999999999999999999987554567899999
Q ss_pred cCCCCC-CeeEEeCCCCCHHHHHHHHHhcccCC-CceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCc
Q 014155 237 GKGGLP-GGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (429)
Q Consensus 237 g~~~l~-~~~~~i~gd~Ssq~~salllAA~~~~-g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~ 314 (429)
++ ++. ++++++++|+||||++++||||+++. ++++|++.+...+.+|+++|+++|++||++|+..++ ..|+|.+++
T Consensus 155 g~-~l~~g~~i~i~gd~SSq~~SalLlAA~~~~g~~~~I~~~~~~~s~~~i~~t~~~L~~~G~~v~~~~~-~~i~v~~~~ 232 (661)
T PRK11860 155 PA-PLRLDAPIRVRGDVSSQFLTALLMALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQREGW-QRFTIPAGS 232 (661)
T ss_pred CC-CcCCCceEEEcCCCcHHHHHHHHHHHHhCCCCCeEEEeCCCCCCCCHHHHHHHHHHHCCCEEEecCC-cEEEEcCCc
Confidence 85 676 78999999999999999999999987 568898876666899999999999999999997653 468998766
Q ss_pred cccCCcceeecCChhhHHHHHHHHHccCC-EEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCC
Q 014155 315 KYKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKH 393 (429)
Q Consensus 315 ~l~~~~~~~v~~D~s~a~~~lalAa~~~g-~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~ 393 (429)
+|+.+.++.+++|+++++||+++|++++| +++++|+.++++|+|..++++|++||+++++.+++++|.+.. ..
T Consensus 233 ~l~~~~~~~V~~D~s~a~~l~aaaa~~~G~~v~i~~v~~~~~q~d~~il~~L~kmGa~i~~~~~~i~i~~~~------~~ 306 (661)
T PRK11860 233 RYRSPGEIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDIRFAEAARAMGAQVTSGPNWLEVRRGA------WP 306 (661)
T ss_pred ccCCCceeEcCCCHHHHHHHHHHHHhCCCCeEEECCCCCCCCccHHHHHHHHHHcCCEEEEeCCEEEEEecC------CC
Confidence 66434688999999999999999999999 999999999999988899999999999999999999998742 25
Q ss_pred ccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 394 LRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 394 L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
++|.+++++++||++|+|+++|++|+|+++|+|+.
T Consensus 307 l~g~~id~~~~pdi~p~Lavla~~a~G~s~I~~v~ 341 (661)
T PRK11860 307 LKAIDLDCNHIPDAAMTLAVMALYADGTTTLRNIA 341 (661)
T ss_pred CcceEEcCcCChHHHHHHHHHHHhCCCcEEEeChh
Confidence 88999999999999999999999999999999864
No 4
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=8.9e-53 Score=455.12 Aligned_cols=345 Identities=50% Similarity=0.781 Sum_probs=296.5
Q ss_pred cccccCCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEE
Q 014155 71 AEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAI 150 (429)
Q Consensus 71 ~~~~~~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~ 150 (429)
+...++|..+.|+|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|++++ ..++
T Consensus 234 ~~~~~~m~~~~v~~~~~l~G~i~vpgsKS~s~R~l~~AaLa~g~s~i~~~l~s~D~~~~~~aL~~lGa~i~~~~--~~~~ 311 (673)
T PRK11861 234 SGTGSHMEHLDLGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDG--GTCV 311 (673)
T ss_pred cccCCccceEEEcCCCccceEEEcCCcHHHHHHHHHHHHhcCCCEEEcCCCCCHHHHHHHHHHHHcCCeEEecC--CEEE
Confidence 44566788899999888999999999999999999999999999999999999999999999999999998765 3688
Q ss_pred EEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCc
Q 014155 151 VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNC 230 (429)
Q Consensus 151 i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~ 230 (429)
|+|.++.+..+ ...+++||+|+++|+|+++++. .++.++++|+++|++|||.+|++.|++||++|+..++.++
T Consensus 312 I~g~~~~~~~~-----~~~i~~g~sGt~~r~L~~~~a~--~~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~~~~~~ 384 (673)
T PRK11861 312 VGGTRGAFTAK-----TADLFLGNAGTAVRPLTAALAV--NGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGF 384 (673)
T ss_pred EEcCCCCcCCC-----CceEecCCcchHHHHHHHHHHc--CCCeEEEECChhhccCChhHHHHHHHHCCCcEEeCCCCCC
Confidence 88875444332 3568999999999999998876 3567888999999999999999999999999987654567
Q ss_pred CcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCC---CceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccce
Q 014155 231 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 307 (429)
Q Consensus 231 ~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~---g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~ 307 (429)
+|++|+|.+-..+.++++++|+||||++++||++++.. +.++|+..++..++||+++|+++|++||++|+..+. ..
T Consensus 385 ~p~~I~g~~~~~~~~~~v~g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~~~S~pyv~~t~~~L~~fG~~V~~~~~-~~ 463 (673)
T PRK11861 385 PPLRIRPATISVDAPIRVRGDVSSQFLTALLMTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVERDGW-QR 463 (673)
T ss_pred CCEEEECCCcCCCCeEEeCCCccHHHHHHHHHHhHhhccCCCCEEEEECCccCCcCHHHHHHHHHHHCCCEEEEcCC-cE
Confidence 89999986322567899999999999999999998653 555576544456899999999999999999997653 46
Q ss_pred EEEeCCccccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCC
Q 014155 308 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 387 (429)
Q Consensus 308 i~I~g~~~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~ 387 (429)
|+|.+++.|..+.+|.+++|+++++||+++|++++|+++|+|+..++.|+|..++++|++||++|++++++++|.+....
T Consensus 464 i~V~~~~~~~~~~~~~V~~D~SsAa~~laaAal~~g~v~I~g~~~~~~q~d~~i~~iL~~mGa~i~~~~~~i~i~~~~~~ 543 (673)
T PRK11861 464 FTVPAGVRYRSPGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDWIEVRGIGHD 543 (673)
T ss_pred EEEcCCcccCCCceeECCCChHHHHHHHHHHHhcCCeEEECCCCCCCCchHHHHHHHHHHcCCcEEEeCCeEEEeecccc
Confidence 88987655632568999999999999999999999999999999999999999999999999999999999988763110
Q ss_pred CCCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 388 PYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 388 ~~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
..+++++++|..++||++|+|+++|++++|+++|+|+.
T Consensus 544 ---~~~l~~~~iD~~~~pDl~p~laalaa~a~G~s~I~~v~ 581 (673)
T PRK11861 544 ---HGRLAPIDMDFNLIPDAAMTIAVAALFADGPSTLRNIG 581 (673)
T ss_pred ---CCCccceeeccccCchHHHHHHHHHHhCCCCEEEECcc
Confidence 02588999999999999999999999999999999963
No 5
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-54 Score=424.70 Aligned_cols=419 Identities=71% Similarity=1.058 Sum_probs=359.8
Q ss_pred cchhhhhcccccccccccCccCCC----CCccceeeeccc----CCCCCCcceeeecccccCCcceeeeeEEeeeccccc
Q 014155 2 AQVSKICNGIQNTRVFTNQTKLQK----PKSVSAISFRSQ----SRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEK 73 (429)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (429)
+++++ +.|++.+..-.+++|+-+ |-|.....+... +..-+..|..+.......|.+..+..+.+++.+++|
T Consensus 14 aeLSr-~lGiLsPtsVarLsKiLvr~~lp~Spdsss~k~~s~~r~~pfsk~~~~~s~d~~n~GS~~r~V~vea~~~taeK 92 (595)
T KOG0692|consen 14 AELSR-YLGILSPTSVARLSKILVRYSLPFSPDSSSPKLRSVPRKVPFSKSWGLKSSDKKNVGSEKRPVKVEASVSTAEK 92 (595)
T ss_pred HHHHH-hhCcCCHHHHhhhhHHHHhcCCCCCCCccchhhhcccccCchHHHHhhhhhhhhccccccccEEEeecchhhhh
Confidence 35555 678887777777777622 223222222221 222356788887777777888889999999999998
Q ss_pred ccCCceEEEcc-CCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEE
Q 014155 74 QSKASEIVLQP-IREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVE 152 (429)
Q Consensus 74 ~~~~~~~~i~p-~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~ 152 (429)
. +.+...| .+.+.+.+.+||||++++|+|++|++.+|+++++|.|.++|+.+|+.+|+.||..++.-+++.+++++
T Consensus 93 a---s~iV~~pdir~i~~~i~~pgSKs~snralllaa~~eg~~~~~n~L~sddt~~m~sal~~L~~~~~~we~~~~~vve 169 (595)
T KOG0692|consen 93 A---SEIVLQPDIREISGLIKLPGSKSLSNRALLLAALSEGTTVVDNLLNSDDTNYMLSALKTLGLNVETWEENNRAVVE 169 (595)
T ss_pred c---chhhcChhHHHhhceeeCCCCchhhhhHHHHHHHhccceeccccccccchhhhhhhHHHhccccceecCCCEEEEE
Confidence 4 4677788 57788999999999999999999999999999999999999999999999999876543344599999
Q ss_pred eCCCCcCCccCCCCceEEEecCchhhhHHHH---HHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCC
Q 014155 153 GCGGLFPLAKQQTGEIELFLGNAGTAMRPLT---AAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTN 229 (429)
Q Consensus 153 g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~---a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~ 229 (429)
|++|.|... ...+.++++||.|+.+|+|+ |++.+.+++..++++|..+|++||+.+|++.|+|.|++|++.++++
T Consensus 170 G~gg~~~~~--~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t~ 247 (595)
T KOG0692|consen 170 GCGGEFSID--SKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGTN 247 (595)
T ss_pred cCCCeeeec--hhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEEeccCC
Confidence 999865432 11145899999999999999 5555444556689999999999999999999999999999998889
Q ss_pred cCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEcc-ccCCchHHHHHHHHHHHcCCeEEEcCccceE
Q 014155 230 CPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDRF 308 (429)
Q Consensus 230 ~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~-~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i 308 (429)
++|+.+.....++++++++.|.+||||.++++|+|+.+.|.++|+.++ .+.|.||+++|+++|++||++++..+.|+.+
T Consensus 248 ~~p~dv~~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~mt~~lme~fgvn~~~s~~~~~~ 327 (595)
T KOG0692|consen 248 CPPVDVNANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVEMTLKLMERFGVNVEHSTSWDRF 327 (595)
T ss_pred CCceeeeccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchhHHHHHHHHhCcCeEecCCCcce
Confidence 999999988789999999999999999999999999999999999987 6789999999999999999999999988888
Q ss_pred EEeCCccccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCC
Q 014155 309 FIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDP 388 (429)
Q Consensus 309 ~I~g~~~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~ 388 (429)
...++++|+.|.++.|++|.+++.||++.|++++.++++.|+...++|+|+.|.++|+.||+++.++.+..++.|++...
T Consensus 328 y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~pmgc~v~qt~~svtv~gp~~ga 407 (595)
T KOG0692|consen 328 YVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLEPMGCKVSQTENSVTVTGPPRGA 407 (595)
T ss_pred EeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhccccceeeeecccccccCCCCCc
Confidence 88888899889999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCccceEEeCCCCChHHHHHHHHHHcC-----CCcEEEecc
Q 014155 389 YGRKHLRAVDVNMNKMPDVAMTLAVVALFA-----DGPTAIRDG 427 (429)
Q Consensus 389 ~~~~~L~g~~v~~~~~pr~am~lav~al~A-----~G~s~I~~a 427 (429)
++-.+|+.+|+ +..++|.+|+++|.|+++ +++|+|++.
T Consensus 408 ~~~~~lr~iD~-m~~m~d~~~t~svvA~~~~~~s~gdptti~~~ 450 (595)
T KOG0692|consen 408 FGMRHLRAIDV-MNKMPDVAMTLSVVALFAGLRSSGDPTTIRDV 450 (595)
T ss_pred ccceehhhhcc-cccccchhHhHhHHHHhhcccCCCCCcccccc
Confidence 66667888887 888999999999999999 889999875
No 6
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=100.00 E-value=4.1e-52 Score=428.04 Aligned_cols=327 Identities=38% Similarity=0.602 Sum_probs=276.4
Q ss_pred EccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEc-CCceeEEEEeCCCCcCC
Q 014155 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED-FAMKRAIVEGCGGLFPL 160 (429)
Q Consensus 82 i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~-~~~~~l~i~g~gg~~~~ 160 (429)
|++.++++|+|.+|||||.++|+|++|+|+.|+++|+|++.++|+..++++|++||++|++. ++...+++.|.++.+..
T Consensus 1 v~~~~~l~G~v~~pgsKs~s~rali~AaLa~g~s~i~n~~~~~Dv~~~~~~l~~lG~~i~~~~~~~~~~~~~g~~~~~~~ 80 (419)
T PF00275_consen 1 VEKPSPLSGTVRVPGSKSNSHRALIAAALAEGESRIRNVPDSDDVEATIDALRALGAKISWDEENGDTVIISGNGGSFSS 80 (419)
T ss_dssp EESSSEEEEEEE--B-HHHHHHHHHHHHHGBSEEEEES---SHHHHHHHHHHHHTT-EEEEEECTSEEEEEETTSTTCEE
T ss_pred CCCCCceeEEEEeCCccHHHHHHHHHHHHhcCCCeEEECCchHHHHHHHHhhcccCceeEEeeccceEEEeccccccccc
Confidence 56778999999999999999999999999999999999999999999999999999999775 34468888885544443
Q ss_pred ccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCC
Q 014155 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGG 240 (429)
Q Consensus 161 ~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~ 240 (429)
+ ....+++|+||+++|+|++++.. .++.++++|+++|++||+.+|++.|++||+++++.++++++|+.|++
T Consensus 81 ~----~~~~i~~g~Sgt~lr~L~~~~~~--~~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~pi~i~~--- 151 (419)
T PF00275_consen 81 P----EDIVIDVGNSGTTLRFLLALLAL--APGPVTFTGDCSLGKRPMDPLLDALRQLGARISYLNGEGFLPIRIRG--- 151 (419)
T ss_dssp S----HHHHEEECCGHHHHHHHHHHHSE--ESSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEETTEEEEEECEEE---
T ss_pred c----cccceeeccChhHHhHHHHHHhe--eeEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEecCCceEEEEEee---
Confidence 3 13478999999999999998765 46789999999999999999999999999999988766788999998
Q ss_pred CCCeeEEeCCCCCHHHHHHHHHhcccC-CCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc-ccC
Q 014155 241 LPGGKVKLSGKLSSQYLTALLMAAPLA-LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK-YKS 318 (429)
Q Consensus 241 l~~~~~~i~gd~Ssq~~salllAA~~~-~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~-l~~ 318 (429)
..+..++++++.||||+++++|+|++. .|+++|.+ ..++||+++|+++|++||++|+.++++..|+|.|.+. +.
T Consensus 152 ~~~~~~~i~~~~sSq~vs~lll~A~~~a~g~i~i~~---~~s~p~i~~t~~~L~~~G~~i~~~~~~~~~~i~g~~~~~~- 227 (419)
T PF00275_consen 152 LKGGPIEIDGDISSQFVSALLLAAALLARGEITIIN---PASEPYIDMTIDMLKKFGAKIEVDGDENIISIPGGQYILP- 227 (419)
T ss_dssp SSSBEEEEETSSSHHHHHHHHHHHHTTSBSEEEEES---ESSSHHHHHHHHHHHHTT-EEEETTSTTEEEEETTSSBBB-
T ss_pred cccCcEEEeccCCCHHHHHHHHHHHHhcCCceEEeC---CCCCCcHHHHHHHHhhceEEEEEccCCcEEEEEecccccc-
Confidence 567889999999999999999988855 56555553 5789999999999999999999976545799999877 54
Q ss_pred CcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHH-HHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccce
Q 014155 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAE-VLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAV 397 (429)
Q Consensus 319 ~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~-~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~ 397 (429)
+.+|++|+|+++|+||+++|++++|+++|+|+..++.|+|..+++ +|++||++|++.+++..+.+. ..+++.
T Consensus 228 ~~~~~v~~D~s~Aa~~l~aa~l~~g~v~i~~~~~~~~~gd~~~l~~iL~~mG~~i~~~~~~~~~~~~-------~~~~~~ 300 (419)
T PF00275_consen 228 GCEYTVPGDWSSAAFFLAAAALTGGEVTIKNLPPNSLQGDKEFLDDILRRMGAKIEEEDDGVIVVGG-------SGLRGI 300 (419)
T ss_dssp SEEEE--B-HHHHHHHHHHHHHCTTEEEEESEEGGGGHHHHHHHHHHHHHTTEEEEEESEEEEEEEE-------TTSBEB
T ss_pred ceeEEecCCHHHHHHHHHHHheeCcEEEEEecCchhhhhhHHHHHHHHHHhCCCcccCCCeeEEEec-------cccccc
Confidence 568999999999999999999999999999999999999988888 999999999999866655544 258889
Q ss_pred EEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 398 DVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 398 ~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+++..++||.+|++++++++++|+++|+|..
T Consensus 301 ~~di~~~pd~~p~l~~~a~~a~g~t~~~g~~ 331 (419)
T PF00275_consen 301 EIDISDAPDLAPTLAVLAAFAEGETRISGVS 331 (419)
T ss_dssp EEEEEBCSTTCHHHHHHHHHHHHHEEEESEE
T ss_pred ccccccCccchhHHHHHHHHhhcceeccccc
Confidence 9999999999999999999999999999864
No 7
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=100.00 E-value=1.4e-47 Score=393.22 Aligned_cols=315 Identities=47% Similarity=0.710 Sum_probs=275.0
Q ss_pred EEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceE
Q 014155 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIE 169 (429)
Q Consensus 90 G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~ 169 (429)
|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|++++ ..++|+|.+.. .+ ...
T Consensus 1 g~i~~p~sKs~~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~l~~lG~~i~~~~--~~~~i~g~~~~--~~-----~~~ 71 (409)
T TIGR01356 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDGG--EVAVIEGVGGK--EP-----QAE 71 (409)
T ss_pred CeEECCCCHHHHHHHHHHHHhCCCCEEECCCCcCHHHHHHHHHHHHcCCEEEecC--CEEEEEccCCC--CC-----CCE
Confidence 6899999999999999999999999999999999999999999999999999765 47899987642 22 247
Q ss_pred EEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeC
Q 014155 170 LFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (429)
Q Consensus 170 i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~ 249 (429)
+++|+||+++|||+++++. .+++++++|+++|++||+.++++.|++||++|+..++.+++|++|+++ +.+++++++
T Consensus 72 i~~g~sgt~~r~l~~l~a~--~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~~~~~~p~~i~~~--~~~~~~~i~ 147 (409)
T TIGR01356 72 LDLGNSGTTARLLTGVLAL--ADGEVVLTGDESLRKRPMGRLVDALRQLGAEISSLEGGGSLPLTISGP--LPGGIVYIS 147 (409)
T ss_pred EEecCchHHHHHHHHHHHc--CCCeEEEECCcccccCCcHHHHHHHHHCCCEEEEcCCCCcCCEEEecC--CCCCeEEeC
Confidence 8999999999999998776 467899999999999999999999999999998765445679999875 456789999
Q ss_pred CCCCHHHHHHHHHhcccCCCceEEEEcc-ccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceeecCCh
Q 014155 250 GKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDA 328 (429)
Q Consensus 250 gd~Ssq~~salllAA~~~~g~~~I~~~~-~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v~~D~ 328 (429)
++.|+||+++++|+++ ..+...+.... +..+.+|++.++++|++||++|+..++ ..++|+|++.++ +.++.+++|+
T Consensus 148 ~~~S~q~~salllaa~-~~~~~~~~~~~~~~~~~~~i~~~l~~L~~~G~~i~~~~~-~~i~I~g~~~l~-~~~~~i~~D~ 224 (409)
T TIGR01356 148 GSASSQYKSALLLAAP-ALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG-RKIVVPGGQKYG-PQGYDVPGDY 224 (409)
T ss_pred CCcchHHHHHHHHhcc-ccCCCeeEEecCCCCCcCHHHHHHHHHHHCCcEEEEcCC-cEEEECCCCccC-CCeeECCCCH
Confidence 9999999999999997 43333444333 456789999999999999999998764 478998876677 7789999999
Q ss_pred hhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCChHH
Q 014155 329 SSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVA 408 (429)
Q Consensus 329 s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~a 408 (429)
+++++|++++++++|+++|+|+..++.+.|..+++.|++||++|++.++.++|.+. ..+++++++..++||++
T Consensus 225 ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~~~~~~i~v~~~-------~~l~~~~~~~~d~~d~~ 297 (409)
T TIGR01356 225 SSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVEGA-------SGLKGIKIDMDDMIDEL 297 (409)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEEEeCCeEEEEec-------CCCccEEEECCCChhHH
Confidence 99999999999999999999998888888888899999999999999899999864 25889999999999999
Q ss_pred HHHHHHHHcCCCcEEEecc
Q 014155 409 MTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 409 m~lav~al~A~G~s~I~~a 427 (429)
|+++++|++++|+++|+|.
T Consensus 298 ~~l~~~aa~a~g~~~i~~~ 316 (409)
T TIGR01356 298 PTLAVLAAFAEGVTRITGA 316 (409)
T ss_pred HHHHHHHHhCCCCEEEECh
Confidence 9999999999999999984
No 8
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=4.5e-45 Score=373.96 Aligned_cols=317 Identities=44% Similarity=0.686 Sum_probs=274.6
Q ss_pred eeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCc
Q 014155 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGE 167 (429)
Q Consensus 88 l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~ 167 (429)
++|+|.+|||||+++|+|++|+|++|+++|+|++.+||+..++++|++||++|++++ .+++|+|.+.....+ .
T Consensus 1 l~g~i~~~~sKs~~~r~l~~a~l~~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~--~~~~i~g~~~~~~~~-----~ 73 (409)
T cd01556 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEEG--GTVEIVGGGGLGLPP-----E 73 (409)
T ss_pred CcEEEEcCCchHHHHHHHHHHHhcCCCEEECCCCCCHHHHHHHHHHHHcCCeEEecC--CEEEEEcCCCCCCCC-----C
Confidence 479999999999999999999999999999999999999999999999999999875 589999875321111 2
Q ss_pred eEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEE
Q 014155 168 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVK 247 (429)
Q Consensus 168 ~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~ 247 (429)
..++.+++|+++||++|+++. .++++.+.|++++++||+..+++.|++||++|+..++....|+ +.++ ++++.+++
T Consensus 74 ~~i~~~~s~~s~~~l~~l~~~--~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~~~~~~i-~~~~-~~~~~~~~ 149 (409)
T cd01556 74 AVLDCGNSGTTMRLLTGLLAL--QGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPL-IGGG-GLKGGEVE 149 (409)
T ss_pred ceEEcCCchHHHHHHHHHHHc--CCCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCCCCCCCe-eecC-CCCCcEEE
Confidence 467899999999999998766 3678999999899999999999999999999997654334455 4443 67888999
Q ss_pred eCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceeecCC
Q 014155 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (429)
Q Consensus 248 i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v~~D 327 (429)
+++|+|+|+++++++++++++|+++|.+. +..+.|+++.++++|++||++|+.++. +.++|+|+++++ +.++.+++|
T Consensus 150 i~~~~ss~~~~~ll~aa~l~~g~~~i~~~-~~~~~~~i~~~~~~L~~lGa~i~~~~~-~~i~I~~~~~l~-~~~i~i~~d 226 (409)
T cd01556 150 IPGAVSSQFKSALLLAAPLAEGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDGY-RTITVKGGQKYK-GPEYTVEGD 226 (409)
T ss_pred eCCCCccHHHHHHHHHHhcCCCceEEEee-CCCCcCHHHHHHHHHHHcCCcEEecCC-cEEEECCCCccc-cCeeEeCCc
Confidence 99999999999999999999999999986 456789999999999999999998762 479998866677 778999999
Q ss_pred hhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeC-CeEEEeCCCCCCCCCCCccceEEeCCCCCh
Q 014155 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE-NSVTVTGPPRDPYGRKHLRAVDVNMNKMPD 406 (429)
Q Consensus 328 ~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~-~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr 406 (429)
++++++|+++++++++++++.|+...+ .+..++++|++||+++++.+ +.++|.|. ..+++.+++.+++||
T Consensus 227 ~s~~~~l~~~a~~~~~~v~i~~~~~~~--~~~~~~~~L~~~G~~i~~~~~~~i~i~~~-------~~~~~~~v~~~~~~d 297 (409)
T cd01556 227 ASSAAFFLAAAAITGSEIVIKNVGLNS--GDTGIIDVLKEMGADIEIGNEDTVVVESG-------GKLKGIDIDGNDIPD 297 (409)
T ss_pred HHHHHHHHHHHHhcCCeEEEcCCCCCC--hHHHHHHHHHHCCCeEEEcCCCeEEEccC-------CCcCceEeccccCch
Confidence 999999999999999999999987655 44789999999999999877 88988764 258888999999999
Q ss_pred HHHHHHHHHHcCCCcEEEecc
Q 014155 407 VAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 407 ~am~lav~al~A~G~s~I~~a 427 (429)
++|++++++++++|+++|+|.
T Consensus 298 ~~~~la~~a~~a~g~~~i~~~ 318 (409)
T cd01556 298 EAPTLAVLAAFAEGPTRIRNA 318 (409)
T ss_pred HHHHHHHHHHhCCCCEEEECh
Confidence 999999999999999999985
No 9
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=100.00 E-value=3.6e-43 Score=360.28 Aligned_cols=315 Identities=29% Similarity=0.451 Sum_probs=274.8
Q ss_pred eeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCC-cCCccCCCC
Q 014155 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FPLAKQQTG 166 (429)
Q Consensus 88 l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~-~~~~~~~~~ 166 (429)
++|+|.+|||||+++|+|++|++++++++|.|++.++|+..++++|++||++|++++ ..++|+|.+.. +..+
T Consensus 1 ~~G~v~i~gskS~~~~~L~~a~la~g~~~i~~~~~~~dv~~t~~~L~~lG~~i~~~~--~~~~v~g~~~~~~~~~----- 73 (408)
T cd01554 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKD--GVITIQGVGMAGLKAP----- 73 (408)
T ss_pred CceEEEcCCchHHHHHHHHHHHhCCCcEEEeCCCccHHHHHHHHHHHHcCCeEEecC--CEEEEEecCCCCCCCC-----
Confidence 479999999999999999999999999999999999999999999999999999865 47889887532 2222
Q ss_pred ceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeE
Q 014155 167 EIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (429)
Q Consensus 167 ~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~ 246 (429)
...+++|++|+++||++|+++. .++++.++|.++++.||+..+++.|++||+++++.++.+++|+.+.+ ++++..+
T Consensus 74 ~~~~~~g~s~~~~~~l~a~~~~--~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~~~~~~~~--~~~~~~i 149 (408)
T cd01554 74 QNALNLGNSGTAIRLISGVLAG--ADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLPPLLKGG--KNLGPIH 149 (408)
T ss_pred CceEEccCccHHHHHHHHHHHc--CCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCcCCEEEec--CCCCCeE
Confidence 2367889999999999998765 35689999999999999999999999999999986655567787754 4788899
Q ss_pred EeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceeecC
Q 014155 247 KLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEG 326 (429)
Q Consensus 247 ~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v~~ 326 (429)
+++++.|+|++++++++|+++.|+++|++. .++++++.++++|++||++|+.++. +.++|.|.++++ +.++.+++
T Consensus 150 ~~~~~~s~q~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~i~~~~~-~~i~I~g~~~~~-~~~~~i~~ 224 (408)
T cd01554 150 YEDPIASAQVKSALMFAALLAKGETVIIEA---AKEPTINHTENMLQTFGGHISVQGT-KKIVVQGPQKLT-GQKYVVPG 224 (408)
T ss_pred EeCCcccHHHHHHHHHHHhcCCCceEEEEe---CCCCCHHHHHHHHHHCCCEEEecCC-cEEEECCCcccc-cceEEeCC
Confidence 999888999999999999999999999975 4677999999999999999987652 589999876776 56788999
Q ss_pred ChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCC---
Q 014155 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK--- 403 (429)
Q Consensus 327 D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~--- 403 (429)
|++.++++++++++++|+++|+|+...+ ++..+++.|++||+++++.++.+++.+. .++|.+++.++
T Consensus 225 D~~~a~~~l~~~~l~~~~v~i~~~~~~~--~~~~~~~~L~~~G~~v~~~~~~i~v~~~--------~~~~~~i~~~~~~~ 294 (408)
T cd01554 225 DISSAAFFLVAAAIAPGRLVLQNVGINE--TRTGIIDVLRAMGAKIEIGEDTISVESS--------DLKATEICGALIPR 294 (408)
T ss_pred ChhHHHHHHHHHhhcCCeEEEecCCCCc--hhhHHHHHHHHcCCEEEEeCCeEEEecC--------CceeEEeccccCCC
Confidence 9999999999999999999999987655 5678999999999999998888888754 48899998877
Q ss_pred CChHHHHHHHHHHcCCCcEEEeccc
Q 014155 404 MPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 404 ~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
.+|++|.++++|++++|+++|+|..
T Consensus 295 ~~d~~p~l~~~a~~a~g~~~i~~~~ 319 (408)
T cd01554 295 LIDELPIIALLALQAQGTTVIKDAE 319 (408)
T ss_pred CchHHHHHHHHHHcCCCcEEEECcc
Confidence 7789999999999999999999864
No 10
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=4.6e-43 Score=362.38 Aligned_cols=323 Identities=41% Similarity=0.662 Sum_probs=274.7
Q ss_pred EccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCC-cCC
Q 014155 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FPL 160 (429)
Q Consensus 82 i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~-~~~ 160 (429)
..|.++++|+|.+|||||.++|+|++|+|++|+++|.|++.++|++.++++|++||++|++ ..++|+|.+.. +..
T Consensus 7 ~~~~~~l~g~i~~p~sks~~~r~l~~a~La~g~s~i~~~~~~~dv~~~~~~L~~lG~~i~~----~~~~i~~~~~~~~~~ 82 (435)
T PRK02427 7 IIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRALGVEIED----DEVVVEGVGGGGLKE 82 (435)
T ss_pred cCCCCCccEEEEcCCChHHHHHHHHHHHhcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEc----ceEEEEccCCCCCCC
Confidence 3455678999999999999999999999999999999999999999999999999999986 25788886532 333
Q ss_pred ccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCC
Q 014155 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGG 240 (429)
Q Consensus 161 ~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~ 240 (429)
+ ...+++|++|+++||++|+++. .++++++.|+++|++||+.++++.|++||++++.. +.+.+|++|+|.
T Consensus 83 ~-----~~~i~~~~sg~~~r~l~~laa~--~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~~-~~~~~~i~i~g~-- 152 (435)
T PRK02427 83 P-----EDVLDCGNSGTTMRLLTGLLAL--QPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEGR-DEGYLPLTIRGG-- 152 (435)
T ss_pred C-----CCEEEccCchHHHHHHHHHHHh--CCCeEEEECChhhccCChHHHHHHHHHCCCEEEeC-CCCCCCEEEecC--
Confidence 3 3468999999999999987765 36689999999999999999999999999999872 234568999984
Q ss_pred CCCeeEEeCCCCCHHHHHHHHHhcccCC-CceEEEEccccCCchHHHHHHHHHHHcCCeEE-EcC-ccceEEEeCCcccc
Q 014155 241 LPGGKVKLSGKLSSQYLTALLMAAPLAL-GNVEIEIIDKLISVPYVEMTLKLMERFGVFVE-HSD-SWDRFFIQGGQKYK 317 (429)
Q Consensus 241 l~~~~~~i~gd~Ssq~~salllAA~~~~-g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~-~~~-~~~~i~I~g~~~l~ 317 (429)
..+..++++++.|+|+++++++++++.. |+++|...++..+.||+..++++|++||++|+ .++ ++..|+|+|++.++
T Consensus 153 ~~~~~~~i~~~~ss~~~~~lll~aa~~~~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~~~~~~~~i~I~g~~~l~ 232 (435)
T PRK02427 153 KKGGPIEYDGPVSSQFVKSLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQRLR 232 (435)
T ss_pred CcCccEEecCCcCCHHHHHHHHHHhhccCCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEeecCCcccEEEECCCcccc
Confidence 3456788998999999999998888766 88778776666789999999999999999998 453 23578998876676
Q ss_pred CCcceeecCChhhHHHHHHHHHccCC-EEEEEccCCCCccchHHHHHHHHHcCCEEEEeCC--------eEEEeCCCCCC
Q 014155 318 SPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTEN--------SVTVTGPPRDP 388 (429)
Q Consensus 318 ~~~~~~v~~D~s~a~~~lalAa~~~g-~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~--------~i~I~g~~~~~ 388 (429)
+.++.+++|++++++|++++++++| ++++.|+...+.+.|..+++.|++||++|+..++ .++|.+
T Consensus 233 -~~~~~i~~D~ssa~~ll~aa~~~~g~~i~i~~~~~~~~~~~~~~l~~L~~~G~~v~~~~~~~~~~~~~~i~i~~----- 306 (435)
T PRK02427 233 -GQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKMGADIEIENEREGGEPVGDIRVRS----- 306 (435)
T ss_pred -cceEEeCCCHHHHHHHHHHHHhCCCCeEEEeCCCCCCCcchHHHHHHHHHcCCceEeccccccCCccCcEEEec-----
Confidence 7789999999999999999999988 8999998777777777899999999999997553 377763
Q ss_pred CCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEecc
Q 014155 389 YGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 389 ~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a 427 (429)
.++++.+++..+++|.+|+++++|++++|+++|+|.
T Consensus 307 ---~~l~~~~~~~~d~~d~~~~l~~~a~~a~g~~~i~~~ 342 (435)
T PRK02427 307 ---SELKGIDIDIPDIIDEAPTLAVLAAFAEGTTVIRNA 342 (435)
T ss_pred ---CCcccEEeecCCCchHHHHHHHHHHhCCCCEEEECh
Confidence 268898999889999999999999999999999985
No 11
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-43 Score=344.84 Aligned_cols=324 Identities=24% Similarity=0.335 Sum_probs=284.2
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCC
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg 156 (429)
|+++.|.++.+++|+|++.|.||++++++.++.|++++++|+|+|+..|+..|++.|+.||++|++++ ...++++...-
T Consensus 1 M~k~~I~Gg~~L~G~V~IsGAKNaalpii~AtlLa~~~v~L~NvP~l~DV~~~~~ll~~lG~~v~~~~-~~~~~i~~~~i 79 (421)
T COG0766 1 MDKLIIEGGNPLNGEVTISGAKNAALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERDG-DGELEIDAPNI 79 (421)
T ss_pred CCEEEEeCCCccceEEEEeccHhHHHHHHHHHHhCCCcEEEeCCCChHHHHHHHHHHHHcCCEEEEcc-CceEEEccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999986 35788876641
Q ss_pred -CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEE
Q 014155 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (429)
Q Consensus 157 -~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I 235 (429)
.+..| ++-..- .. ++.++++.+++|++...+.++|+|.|+.||++.|++.|++||++|+.+++ + +..
T Consensus 80 ~~~~ap---y~~v~k-mR----ASi~vlGplLaR~g~a~V~LPGGCaIG~RPvDlHl~gleaLGA~i~~e~g--~--i~a 147 (421)
T COG0766 80 NSTEAP---YELVRK-MR----ASILVLGPLLARFGKAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHG--Y--IEA 147 (421)
T ss_pred ccccCC---HHHHHH-HH----hHHHHHHHHHhhcCceEECCCCCccCCCCchhHHHHHHHHcCCEEEEcCC--E--EEE
Confidence 12222 100000 11 23367777788888899999999999999999999999999999998643 3 777
Q ss_pred ecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc
Q 014155 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (429)
Q Consensus 236 ~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (429)
+.++++++.++.++ .+|...+..++|||.+++|.+.|+| ...+|++.+++++|++||++|+..++ ++|+|+|.++
T Consensus 148 ~a~~~L~G~~I~ld-~~SVGATenimmAA~lA~G~TvIeN---AA~EPEIvDLa~~Ln~MGA~I~GaGT-~~I~I~GV~~ 222 (421)
T COG0766 148 SAPKGLKGAHIYLD-KVSVGATENIMMAAVLAEGTTVIEN---AAREPEIVDLANFLNKMGAKIEGAGT-STITIEGVEK 222 (421)
T ss_pred EccCCccceEEEec-CCcccHHHHHHHHHHhcCCcEEEee---cccCchHHHHHHHHHHcCCeeEEcCC-CeEEEecccc
Confidence 77756999999998 5888888999999999999999997 46899999999999999999999987 7999999999
Q ss_pred ccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 014155 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (429)
Q Consensus 316 l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~ 395 (429)
++ +.++++.||+.++.+|+++||+++|.++++|+.+++++ .++..|++||++++.++|+++|.... ..++
T Consensus 223 L~-g~~h~VipDRIEAGT~~~aaA~tgg~v~i~~v~~~hl~---~~~~kL~e~G~~~~~~~~~i~v~~~~------~~~k 292 (421)
T COG0766 223 LH-GAEHSVIPDRIEAGTFLVAAAITGGDVTIENVRPEHLE---AVLAKLREAGVDIEEGEDGIRVDMEG------KRLK 292 (421)
T ss_pred cc-ceeeEecCchhhHHHHHHHHHHhCCcEEEeCCCHHHHH---HHHHHHHHhCCeEEEcCCeEEEeccC------CCCC
Confidence 98 89999999999999999999999999999999998885 79999999999999999999999753 2589
Q ss_pred ceEEeCCCCC----hHHHHHHHHHHcCCCcEEEeccc
Q 014155 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 396 g~~v~~~~~p----r~am~lav~al~A~G~s~I~~a~ 428 (429)
++++.+..+| |++..+.++.+.++|.++|++.+
T Consensus 293 ~v~i~T~p~PGFpTDmQaqf~~L~~~a~G~s~I~Eti 329 (421)
T COG0766 293 AVDIKTLPYPGFPTDMQAQFMALLTVAEGTSVITETI 329 (421)
T ss_pred cceeccCCCCCCchhHHHHHHHHHhhcCCceEEEEee
Confidence 9999999888 89999999999999999998764
No 12
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=3.3e-41 Score=369.80 Aligned_cols=325 Identities=28% Similarity=0.470 Sum_probs=274.7
Q ss_pred cCCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeC
Q 014155 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (429)
Q Consensus 75 ~~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~ 154 (429)
.-++.+.|+|...+.|+|.+|||||.++|.|++|+|++++++|+|++.++|+..++++|++||++|++.++ ..++|+|.
T Consensus 299 ~~~~~~~i~~~~~~~G~i~ipgskS~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~lG~~v~~~~~-~~~~i~g~ 377 (735)
T PRK14806 299 ANDVSYSVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVIEGPHN-GRVTIHGV 377 (735)
T ss_pred cCceEEEeccCCcccEEEEcCCChhHHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHcCCEEEecCC-CEEEEEcC
Confidence 34678899887788999999999999999999999999999999999999999999999999999986433 37888875
Q ss_pred CC-CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcE
Q 014155 155 GG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPV 233 (429)
Q Consensus 155 gg-~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv 233 (429)
+. .+..+ ...++++++|+++|+++|+++. ..+++.++|.++++.||+.+++++|++||++|+.+ +++++|+
T Consensus 378 ~~~~~~~~-----~~~i~~~~s~ts~~ll~a~la~--~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~~-~~g~~pi 449 (735)
T PRK14806 378 GLHGLKAP-----PGPLYMGNSGTSMRLLSGLLAA--QSFDSVLTGDASLSKRPMERVAKPLREMGAVIETG-EEGRPPL 449 (735)
T ss_pred CCCCCCCC-----CceeeccCchHHHHHHHHHHhc--CCCeEEEECChhhhhCChHHHHHHHHHCCCEEEcC-CCCcCCE
Confidence 42 13222 2368889999999999988754 46689999999999999999999999999999853 3467889
Q ss_pred EEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCC
Q 014155 234 RINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG 313 (429)
Q Consensus 234 ~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~ 313 (429)
+|+|+.++++.++++++ .|+|++++++|+|+++.|+++|.+. .++...|+++|++||++|+.++ +.+.|.|+
T Consensus 450 ~i~g~~~l~g~~~~l~~-~ssq~~s~ll~aA~~~~g~~~i~~~-----~~~~~~t~~~L~~~G~~i~~~~--~~i~I~g~ 521 (735)
T PRK14806 450 SIRGGQRLKGIHYDLPM-ASAQVKSCLLLAGLYAEGETSVTEP-----APTRDHTERMLRGFGYPVKVEG--NTISVEGG 521 (735)
T ss_pred EEECCCCccceEEeccC-chHHHHHHHHHHHhccCCceEEecC-----cCCHHHHHHHHHHCCCEEEecC--CEEEECCC
Confidence 99985458999999996 6999999999999999999998743 3444558999999999999876 48999987
Q ss_pred ccccCCcceeecCChhhHHHHHHHHHccCC-EEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCe---------EEEeC
Q 014155 314 QKYKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---------VTVTG 383 (429)
Q Consensus 314 ~~l~~~~~~~v~~D~s~a~~~lalAa~~~g-~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~---------i~I~g 383 (429)
+.++ +.++.+++|++.++||++++++++| +++++|+.... .+..|+++|++||+++++.++. +.+.+
T Consensus 522 ~~~~-~~~~~i~~D~~~a~~~~~~a~~~~g~~v~i~~~~~~~--~~~~~~~~L~~mGa~i~~~~~~~~~g~~~~~i~v~~ 598 (735)
T PRK14806 522 GKLT-ATDIEVPADISSAAFFLVAASIAEGSELTLEHVGINP--TRTGVIDILKLMGADITLENEREVGGEPVADIRVRG 598 (735)
T ss_pred cccc-CCeEEeCCCHHHHHHHHHHHHhCCCCEEEEccCCCCc--chHHHHHHHHHcCCEEEEcCcccccCCcceeEEEec
Confidence 6777 7789999999999999999999855 79999986433 3367999999999999998773 44543
Q ss_pred CCCCCCCCCCccceEEeCCCCC---hHHHHHHHHHHcCCCcEEEecc
Q 014155 384 PPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 384 ~~~~~~~~~~L~g~~v~~~~~p---r~am~lav~al~A~G~s~I~~a 427 (429)
. +|+|+++++.+.| |++|+|+++|++|+|+++|+|.
T Consensus 599 ~--------~l~~~~i~~~~~p~~~D~~p~la~~a~~a~G~s~i~~~ 637 (735)
T PRK14806 599 A--------RLKGIDIPEDQVPLAIDEFPVLFVAAACAEGRTVLTGA 637 (735)
T ss_pred C--------CcccEEechHhCcchhhHHHHHHHHHHhCCCcEEEECh
Confidence 2 6899999999888 8889999999999999999985
No 13
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=100.00 E-value=6.6e-41 Score=344.72 Aligned_cols=322 Identities=25% Similarity=0.348 Sum_probs=268.0
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCC
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg 156 (429)
|..+.|+|.+.+.|+|.+|||||+++|+|++|+|++|+++|+|++.++|++.++++|++||++|++.++ ..++|+|.+.
T Consensus 1 ~~~~~i~~~~~~~G~i~~pgsKS~~~r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~lG~~i~~~~~-~~~~i~g~~~ 79 (417)
T PRK09369 1 MDKLVIEGGKPLSGEVTISGAKNAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVEFDGN-GTVTIDASNI 79 (417)
T ss_pred CCEEEEeCCCCceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHCCCEEEEcCC-CEEEEECCCC
Confidence 556788887778999999999999999999999999999999999999999999999999999987653 4788888652
Q ss_pred CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEe
Q 014155 157 LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRIN 236 (429)
Q Consensus 157 ~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~ 236 (429)
. ..+ . ...+ .+.++++++++.+++.. .++++++++|++++++||+..+++.|++||++|+..+ +++++++.
T Consensus 80 ~-~~~-~---~~~~-~~~s~~s~~~l~~~~~~-~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~--~~~~v~~~ 150 (417)
T PRK09369 80 N-NTE-A---PYEL-VKKMRASILVLGPLLAR-FGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEH--GYVEAKAD 150 (417)
T ss_pred C-CCc-C---CHHH-HhhhhhHHHHHHHHhcc-CCceEEEecCCCccCCCchHHHHHHHHHCCCEEEEEC--CEEEEEec
Confidence 1 111 0 1112 45677777777776643 2345799999999999999999999999999998754 34455553
Q ss_pred cCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccc
Q 014155 237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316 (429)
Q Consensus 237 g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l 316 (429)
| ++++.+++++. .|+|+++.+++++++..|.++|.+. .+++|++.++++|++||++|+..+ ++.+.|+|++.+
T Consensus 151 g--~l~~~~~~l~~-~ss~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~-~~~i~I~g~~~~ 223 (417)
T PRK09369 151 G--RLKGAHIVLDF-PSVGATENILMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKISGAG-TDTITIEGVERL 223 (417)
T ss_pred C--CcccceEeCCC-CCHHHHHHHHHHHHhCCCcEEEeCC---CcCCcHHHHHHHHHHCCCEEEEcC-CceEEEcCCCcc
Confidence 3 57888999986 5899999999999888899988753 367899999999999999998654 258999987767
Q ss_pred cCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccc
Q 014155 317 KSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 396 (429)
Q Consensus 317 ~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g 396 (429)
+ +.++.+++|++.+++|+++|++++|+++|.|+...+++ .+++.|++||++|+++++.++|.+. +.++|
T Consensus 224 ~-~~~~~v~~D~s~as~ll~aa~l~~g~v~i~~~~~~~~~---~~~~~L~~~G~~v~~~~~~i~v~~~-------~~l~~ 292 (417)
T PRK09369 224 H-GAEHTVIPDRIEAGTFLVAAAITGGDVTIRGARPEHLE---AVLAKLREAGAEIEEGEDGIRVDMP-------GRLKA 292 (417)
T ss_pred C-CceEEecCCHHHHHHHHHHHHHcCCceEEecCChhHHH---HHHHHHHHcCCEEEEcCCEEEEeeC-------CCccc
Confidence 6 67889999999999999999998999999987655553 7899999999999998888988764 25889
Q ss_pred eEEeCCCCC----hHHHHHHHHHHcCCCcEEEec
Q 014155 397 VDVNMNKMP----DVAMTLAVVALFADGPTAIRD 426 (429)
Q Consensus 397 ~~v~~~~~p----r~am~lav~al~A~G~s~I~~ 426 (429)
+++++.++| |++|.++++|++++|+++|.|
T Consensus 293 ~~i~~~~~p~v~~D~~~~l~~~aa~a~g~~~i~~ 326 (417)
T PRK09369 293 VDIKTAPYPGFPTDMQAQFMALLTQAEGTSVITE 326 (417)
T ss_pred eEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 999999999 999999999999999999986
No 14
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=100.00 E-value=4e-39 Score=331.16 Aligned_cols=322 Identities=25% Similarity=0.309 Sum_probs=262.9
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCC
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg 156 (429)
|.++.|.|.+.++|+|.+|||||.++|+|++|+|++|+++|+|.+.++|++.++++|++||++|++.+ ..++|+|.+.
T Consensus 1 ~~~~~v~~~~~~~g~i~~p~skS~~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~lG~~i~~~~--~~~~i~g~~~ 78 (416)
T TIGR01072 1 MDKLVVEGGKPLSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDN--NTLEINTPNI 78 (416)
T ss_pred CceEEEeCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHCCCEEEEcC--CEEEEECCCC
Confidence 56788888777899999999999999999999999999999999999999999999999999999865 4689998752
Q ss_pred -CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEE
Q 014155 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (429)
Q Consensus 157 -~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I 235 (429)
.+..+ ....+. ..++++++++++ +.+...++.+.|++++++||++.+++.|++||++++..+ +++++++
T Consensus 79 ~~~~~~-----~~~s~~--~ra~~~~~~~~l-a~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~--~~~~v~~ 148 (416)
T TIGR01072 79 NSTEAP-----YELVRK--MRASILVLGPLL-ARFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIVIED--GYVYASA 148 (416)
T ss_pred CCCCCC-----HHHHhh--hhHHHHHHHHHh-ccCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEEEEC--CEEEEEe
Confidence 22222 011111 113343444443 322345788999899999999999999999999998754 3445544
Q ss_pred ecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc
Q 014155 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (429)
Q Consensus 236 ~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (429)
.+ ++++.++++++ .++|+++++++++++..+.++|.+. .++++++.++++|++||++++..++ +.+.|.|.++
T Consensus 149 ~~--~l~~~~~~l~~-~~s~~~~~ll~aa~~~~~~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~l~I~g~~~ 221 (416)
T TIGR01072 149 KG--RLVGAHIVLDK-VSVGATENIIMAAVLAEGTTVIENA---AREPEIVDLCEFLNKMGAKITGAGS-NTITIEGVEK 221 (416)
T ss_pred cC--cceeeEEecCC-CCHHHHHHHHHHHHhCCCcEEEecC---CcCcCHHHHHHHHHHCCCEEEEcCC-CEEEEeCCCc
Confidence 33 57888899985 6889999999999999999888653 3678899999999999999985432 5899998766
Q ss_pred ccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 014155 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (429)
Q Consensus 316 l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~ 395 (429)
++ +.++.+++|++.++++++++++++|+++|.|+..++++ .+++.|++||++|+++++.+.+.+.. ++++
T Consensus 222 ~~-~~~~~v~~D~~~a~~~l~a~~l~~g~~~i~~~~~~~~~---~~~~~L~~~G~~v~~~~~~i~v~~~~------~~l~ 291 (416)
T TIGR01072 222 LH-GTEHSVIPDRIEAGTFLVAAAITGGEITIKNVRPDHLR---AVLAKLREIGAEVEVDENGIRVDMRQ------KRLK 291 (416)
T ss_pred cc-CcEEEEcCCHHHHHHHHHHHHHcCCeEEEEecCchHHH---HHHHHHHHCCCEEEEcCCEEEEEecC------CCcc
Confidence 76 67889999999998999999998999999998866664 69999999999999999999887531 2589
Q ss_pred ceEEeCCCCC----hHHHHHHHHHHcCCCcEEEecc
Q 014155 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 396 g~~v~~~~~p----r~am~lav~al~A~G~s~I~~a 427 (429)
+.++++.++| |+.|+|+++|++|+|+++|.|.
T Consensus 292 ~~~i~~~~~p~v~~D~~~~l~~la~~a~g~~~i~~~ 327 (416)
T TIGR01072 292 AVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITET 327 (416)
T ss_pred eeEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEee
Confidence 9999999999 9999999999999999999884
No 15
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=100.00 E-value=2.2e-39 Score=331.48 Aligned_cols=311 Identities=25% Similarity=0.353 Sum_probs=257.9
Q ss_pred eeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCC-cCCccCCCC
Q 014155 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGL-FPLAKQQTG 166 (429)
Q Consensus 88 l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~-~~~~~~~~~ 166 (429)
++|+|.+|||||+++|+|++|+|++|+++|+|.++.+|++.++++|++||++|++.+ ..+++|+|.+.. +..+
T Consensus 1 ~~g~i~~p~sKS~~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~lG~~i~~~~-~~~~~I~~~~~~~~~~~----- 74 (400)
T cd01555 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEG-ENTLVIDASNINSTEAP----- 74 (400)
T ss_pred CceEEEcCCcHHHHHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHcCCEEEECC-CCEEEEECCCCCCCcCC-----
Confidence 379999999999999999999999999999999999999999999999999998865 258999886422 2222
Q ss_pred ceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeE
Q 014155 167 EIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (429)
Q Consensus 167 ~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~ 246 (429)
.. .+++++++++++.+++.. ..+..++++|++++++||+..+++.|++||++|+..++ +.+ |.+++.+++.++
T Consensus 75 -~~-~~~~~~t~~~~~~~l~~~-~~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~~--~~~--v~~~~~~~~~~~ 147 (400)
T cd01555 75 -YE-LVRKMRASILVLGPLLAR-FGEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIEDG--YVE--AKAAGRLKGARI 147 (400)
T ss_pred -HH-HHhhhhhHHHHHHHHhcC-CCceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeCC--EEE--EecCCCccceEE
Confidence 11 235677888777775532 23467888899999999999999999999999987543 334 433335778889
Q ss_pred EeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceeecC
Q 014155 247 KLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEG 326 (429)
Q Consensus 247 ~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v~~ 326 (429)
.++. .++|+.+.++++++++.|.++|.+. .+++++..++++|++||++|+..+. +.|.|.|.+.++ +.++.+++
T Consensus 148 ~i~~-~~~~~~~~ll~aa~~~~g~~~i~~~---~~~~~i~~~~~~L~~~G~~v~~~~~-~~i~I~g~~~l~-~~~~~~~~ 221 (400)
T cd01555 148 YLDF-PSVGATENIMMAAVLAEGTTVIENA---AREPEIVDLANFLNKMGAKIEGAGT-DTIRIEGVERLH-GAEHTVIP 221 (400)
T ss_pred ECCC-CCHHHHHHHHHHHHhCCCeEEEecc---cCCccHHHHHHHHHHCCCEEEEcCC-ceEEEeCCCCCC-CcEEEecC
Confidence 8885 5788999999999989899988763 3577888999999999999997442 589999876676 67888999
Q ss_pred ChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCC-
Q 014155 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP- 405 (429)
Q Consensus 327 D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~p- 405 (429)
|++.++++++++++++|+++|+|+..++++ .+++.|++||++|+++++.++|.+.. .++++.++++.++|
T Consensus 222 D~~~a~~~l~aa~~~~g~~~i~~~~~~~~~---~~~~~L~~~G~~i~~~~~~i~i~~~~------~~l~~~~i~~~~~p~ 292 (400)
T cd01555 222 DRIEAGTFLVAAAITGGDITVENVIPEHLE---AVLAKLREMGAKIEIGEDGIRVDGDG------GRLKAVDIETAPYPG 292 (400)
T ss_pred CHHHHHHHHHHHHHhCCcEEEeCCChhHHH---HHHHHHHHCCCEEEEcCCEEEEEcCC------CCceeeeeecCcCCC
Confidence 999999999999999999999998776664 79999999999999999999998641 15889999999999
Q ss_pred ---hHHHHHHHHHHcCCCcEEEec
Q 014155 406 ---DVAMTLAVVALFADGPTAIRD 426 (429)
Q Consensus 406 ---r~am~lav~al~A~G~s~I~~ 426 (429)
|++|.++++|++++|+++|.|
T Consensus 293 ~~~D~~~~l~~~a~~~~g~~~~~~ 316 (400)
T cd01555 293 FPTDLQAQFMALLTQAEGTSVITE 316 (400)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEe
Confidence 999999999999999999987
No 16
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=326.48 Aligned_cols=321 Identities=23% Similarity=0.301 Sum_probs=249.1
Q ss_pred ceEEEccC----CceeEEEEccCChhHHHHHHH-HHHh-cCCcEEEec--CCCchhHHHHHHHHHHcCCEEEEcCC--ce
Q 014155 78 SEIVLQPI----REISGTVTLPGSKSLSNRILL-LAAL-SEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MK 147 (429)
Q Consensus 78 ~~~~i~p~----~~l~G~i~vpgsKs~s~R~L~-~aaL-~~g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~--~~ 147 (429)
..+.|++. ......+.+ |....+.|+++ ++++ .++.++++| -++.||+.+++++|+++|++|+..++ ..
T Consensus 70 ~~~~v~g~g~~~~~~~~~l~~-GnSGTt~R~l~glla~~~~~~~~l~Gd~sl~~RPm~~l~~aLr~~Ga~i~~~~~~~~~ 148 (428)
T COG0128 70 DTLVVRGTGGELKEPPAVLDC-GNSGTTLRLLTGLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYL 148 (428)
T ss_pred CEEEEeCCCCCcCCCCceeee-ccchhHHHHHHHHHhcCCCCeEEEECChhhhhCCcHHHHHHHHHCCcEEEecCCCCcC
Confidence 46677654 223566776 88889999997 4555 559999999 56799999999999999999998753 47
Q ss_pred eEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHc--CCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEE
Q 014155 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA--GGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDC 224 (429)
Q Consensus 148 ~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~--~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~ 224 (429)
|+.|+|.- ... ...+... .+++++.+++.++ ..++.+++.++ .+.++||.+| +++|++||++|+.
T Consensus 149 Pl~i~G~~---~~~-----~i~i~~~---~SSq~vsslL~~a~l~~~~~~~~~~~-~~~s~~yid~T~~mL~~FGv~v~~ 216 (428)
T COG0128 149 PLTIKGGL---KGG-----EVEIDGP---VSSQQVSSLLLLAPLLAEGTTIIVGG-VLESKPYIDHTLDMLKAFGVEVEN 216 (428)
T ss_pred CEEEECCC---CCc-----eEEEecc---chHHHHHHHHHHHhhcCCCcEEEecC-ccCCccHHHHHHHHHHHcCCeEEe
Confidence 99999961 111 1222211 1344444443332 12455554443 4889999999 9999999999998
Q ss_pred eCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceE-EEEccccCCchHHHHHHHHHHHcCCeEEEcC
Q 014155 225 ILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE-IEIIDKLISVPYVEMTLKLMERFGVFVEHSD 303 (429)
Q Consensus 225 ~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~-I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~ 303 (429)
+. . .+.|++++++.+++|.||||+|| ++|+++|++....++ |.. .+....|.+...+++|++||++|++.+
T Consensus 217 ~~---~-~~~i~~g~~~~~~~~~VpgD~SS---AafflaAaai~~~~~~i~~-~~v~~~~~~~~~~~vl~~MGa~i~~~~ 288 (428)
T COG0128 217 EG---Y-RFYIPGGQKLTPGDYDVPGDYSS---AAFFLAAAAITPRSTGITL-KNVQPNPTDKGILDVLEKMGADIEIGD 288 (428)
T ss_pred ec---c-EEEECCCccccCceEEcCCChhh---HHHHHHHHHhcCCCceeee-ccCCcCcchhHHHHHHHHcCCeEEEcc
Confidence 52 2 59999987799999999999999 898888776654444 332 233345778889999999999999987
Q ss_pred ccceEEEeCCccccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEE
Q 014155 304 SWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVT 380 (429)
Q Consensus 304 ~~~~i~I~g~~~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~ 380 (429)
++ .|+|.+..+|+ +.+++...=...+++++++|++++|+++|+|+.+.|.+ +| .+++++|+|||++|++.+|+++
T Consensus 289 ~~-~l~V~~~~~l~-gi~vd~~~~pD~~p~lAvlAa~A~g~t~I~n~~~lRvKEsDRi~a~a~eL~klG~~v~e~~Dgl~ 366 (428)
T COG0128 289 DS-VLRVRGSGELK-GIEVDMDDMPDLAPTLAVLAAFAEGTTRIRNAEELRVKESDRIAAMATELRKLGVEVEETEDGLI 366 (428)
T ss_pred Cc-eEEEeecCCcc-CeEeCcccCchHHHHHHHHHHhcCCCeEEEchHHhhhcchhHHHHHHHHHHhcCcEEEecCCeEE
Confidence 63 36899877787 76653322123377899999999999999999999988 88 8999999999999999999999
Q ss_pred EeCCCCCCCCCCCccceE-EeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 381 VTGPPRDPYGRKHLRAVD-VNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 381 I~g~~~~~~~~~~L~g~~-v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
|+|+ ..++|.. |++|+|||++|+++++++.++++++|+|+.
T Consensus 367 I~g~-------~~l~g~~~v~s~~DHRiaMa~aia~l~~~~~v~I~~~~ 408 (428)
T COG0128 367 ITGG-------TKLKGAGTVDSYGDHRIAMAFAVAGLLSEGGVRIDDAE 408 (428)
T ss_pred EECC-------CCCCCCccccCcCcHHHHHHHHHHHhhcCCCEEEcCcc
Confidence 9997 2688884 999999999999999999999889999864
No 17
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=100.00 E-value=1.6e-38 Score=326.92 Aligned_cols=319 Identities=25% Similarity=0.342 Sum_probs=256.6
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCC
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg 156 (429)
|.++.|+|.+.+.|+|.+|||||.++|+|++|+|++|+++|+|++.+.|++.++++|++||++|+..+ ..++|+|.+.
T Consensus 1 ~~~~~i~~~~~~~G~v~vpgsKSs~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~lG~~i~~~~--~~~~I~g~~~ 78 (417)
T PRK12830 1 MEKIVINGGKPLSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRDG--DTLEIDPTGI 78 (417)
T ss_pred CceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHCCCEEEEcC--CEEEEECCCC
Confidence 56788888778899999999999999999999999999999999999999999999999999998743 4788988531
Q ss_pred -CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEE
Q 014155 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (429)
Q Consensus 157 -~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I 235 (429)
..+.+ .... .+.+.+.+++ +.+++..+...++++|+++++.||+..+++.|++||++|+..++ ++.|
T Consensus 79 ~~~~~~-----~~~~--~~~~as~~~~-~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~----~i~v 146 (417)
T PRK12830 79 QSMPLP-----NGKV--KSLRASYYFM-GALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEGG----AIYL 146 (417)
T ss_pred CCCCCC-----HHHH--hhchhHHHHH-HHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEcCC----EEEE
Confidence 11111 0000 1122334444 44443222337899999999999999999999999999987542 4888
Q ss_pred ecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc
Q 014155 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (429)
Q Consensus 236 ~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (429)
.+. ++++.+++++. .|+|+++.++++++++.|.++|.+ ..+++++..++++|++||++|+..+ ++.++|.|++.
T Consensus 147 ~~~-~l~~~~~~ld~-~ss~~~~~ll~a~~~~~g~~~i~~---~~~~~~i~~l~~~L~~~G~~i~~~~-~~~i~I~g~~~ 220 (417)
T PRK12830 147 KAD-ELKGAHIYLDV-VSVGATINIMLAAVKAKGRTVIEN---AAKEPEIIDVATLLNNMGANIKGAG-TDVIRIEGVDE 220 (417)
T ss_pred EeC-CccCCEEECCC-CCHHHHHHHHHHHHcCCCeEEEcc---CCcCCcHHHHHHHHHHCCCEEEEcC-CcEEEEccCCc
Confidence 875 57888888886 577888888888888888887764 2467899999999999999998644 25899999777
Q ss_pred ccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 014155 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (429)
Q Consensus 316 l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~ 395 (429)
++ +.++.+++|++++++++++++..++.++++|+...+++ .+++.|++||++|+++++.+++.+. .+++
T Consensus 221 ~~-~~~~~v~~d~~sa~~~l~~aa~~~~~~~i~~~~~~~~~---~~~~~L~~~G~~i~~~~~~i~v~~~-------~~l~ 289 (417)
T PRK12830 221 LH-GCRHTVIPDRIEAGTYMILAAACGGGVTINNVIPEHLE---SFIAKLEEMGVRVEVNEDSIFVEKQ-------GNLK 289 (417)
T ss_pred cc-CcEEeeCCCcHHHHHHHHHHHHhCCCEEEeCCChhHHH---HHHHHHHHCCCEEEEcCCEEEEEeC-------CCcc
Confidence 87 77888899998888777777777788889998655554 6889999999999998889988864 2689
Q ss_pred ceEEeCCCCC----hHHHHHHHHHHcCCCcEEEec
Q 014155 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIRD 426 (429)
Q Consensus 396 g~~v~~~~~p----r~am~lav~al~A~G~s~I~~ 426 (429)
|.+++..+.| |++|++++++++++|+++|.+
T Consensus 290 ~~~i~~~~~p~~~~D~~~~laa~a~~a~g~~~i~~ 324 (417)
T PRK12830 290 AVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTD 324 (417)
T ss_pred ceeeccCCCCCChHHHHHHHHHHHHcCCCcEEEEe
Confidence 9999999999 999999999999999999984
No 18
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=100.00 E-value=1.4e-36 Score=311.71 Aligned_cols=309 Identities=22% Similarity=0.265 Sum_probs=242.7
Q ss_pred EEEEccCChhHHHHHHH-HHHhcCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEcCC--ceeEEEEeCCCCcCCccCC
Q 014155 90 GTVTLPGSKSLSNRILL-LAALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFPLAKQQ 164 (429)
Q Consensus 90 G~i~vpgsKs~s~R~L~-~aaL~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~~--~~~l~i~g~gg~~~~~~~~ 164 (429)
..|.+ |....+.|+|+ ++++++++++|+|. +.+||+..++++|++||+++++.++ ..|++|+|.. ...
T Consensus 70 ~~i~~-g~sgt~~r~l~~l~a~~~~~~~i~g~~~l~~rp~~~l~~~L~~lGa~v~~~~~~~~~p~~i~~~~---~~~--- 142 (409)
T TIGR01356 70 AELDL-GNSGTTARLLTGVLALADGEVVLTGDESLRKRPMGRLVDALRQLGAEISSLEGGGSLPLTISGPL---PGG--- 142 (409)
T ss_pred CEEEe-cCchHHHHHHHHHHHcCCCeEEEECCcccccCCcHHHHHHHHHCCCEEEEcCCCCcCCEEEecCC---CCC---
Confidence 35666 66678999887 56789999999995 6679999999999999999987643 3579998741 111
Q ss_pred CCceEEEecCchhhhHHHHHHHHHc--CCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCC
Q 014155 165 TGEIELFLGNAGTAMRPLTAAVTAA--GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLP 242 (429)
Q Consensus 165 ~~~~~i~~g~sgts~r~L~a~l~a~--~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~ 242 (429)
...+.. +.+.|+++++++++ .....+++.|++.+.+||+..++++|++||++|+...+ .+++|++.+.++
T Consensus 143 --~~~i~~---~~S~q~~salllaa~~~~~~~~~~~~~~~~~~~~i~~~l~~L~~~G~~i~~~~~---~~i~I~g~~~l~ 214 (409)
T TIGR01356 143 --IVYISG---SASSQYKSALLLAAPALQAVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG---RKIVVPGGQKYG 214 (409)
T ss_pred --eEEeCC---CcchHHHHHHHHhccccCCCeeEEecCCCCCcCHHHHHHHHHHHCCcEEEEcCC---cEEEECCCCccC
Confidence 122322 24678888877664 34567788887778888888899999999999987432 379998875588
Q ss_pred CeeEEeCCCCCHHHHHHHHHhcccC-CCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcc
Q 014155 243 GGKVKLSGKLSSQYLTALLMAAPLA-LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGN 321 (429)
Q Consensus 243 ~~~~~i~gd~Ssq~~salllAA~~~-~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~ 321 (429)
+.+|+|++|+|+ ++++++|++. +|+++|.+... .+.+.+..++++|++||++|+..++ .|+|.+.++++ +.+
T Consensus 215 ~~~~~i~~D~ss---a~~ll~aa~l~~g~i~i~~~~~-~~~~~~~~~~~~L~~~Ga~i~~~~~--~i~v~~~~~l~-~~~ 287 (409)
T TIGR01356 215 PQGYDVPGDYSS---AAFFLAAAAITGGRVTLENLGI-NPTQGDKAIIIVLEEMGADIEVEED--DLIVEGASGLK-GIK 287 (409)
T ss_pred CCeeECCCCHHH---HHHHHHHHHhcCCEEEECCCCC-CCCCCcHHHHHHHHHcCCeEEEeCC--eEEEEecCCCc-cEE
Confidence 999999999998 6776666554 55677776532 2333345678899999999998764 79998766676 777
Q ss_pred eeecCChhh-HHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccce
Q 014155 322 AFVEGDASS-ASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAV 397 (429)
Q Consensus 322 ~~v~~D~s~-a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~ 397 (429)
+.+ +|++. +++++++|++++|+++|+|+.+.+.+ +| .+++++|++||+++++++|+++|+|. ..++|.
T Consensus 288 ~~~-~d~~d~~~~l~~~aa~a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~i~~~~d~i~i~g~-------~~l~g~ 359 (409)
T TIGR01356 288 IDM-DDMIDELPTLAVLAAFAEGVTRITGAEELRVKESDRIAAIAEELRKLGVDVEEFEDGLYIRGK-------KELKGA 359 (409)
T ss_pred EEC-CCChhHHHHHHHHHHhCCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCEEEEeCCeEEEECC-------CCCCCC
Confidence 764 57765 44566688899999999999887765 77 67999999999999999999999875 258899
Q ss_pred EEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 398 DVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 398 ~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|++++|||++|+++++|++++|+++|+|+.
T Consensus 360 ~i~~~~d~r~am~lav~a~~~~g~~~I~n~~ 390 (409)
T TIGR01356 360 VVDTFGDHRIAMAFAVAGLVAEGEVLIDDPE 390 (409)
T ss_pred eeeCCCcHHHHHHHHHHHhcCCCCeEEcCcC
Confidence 9999999999999999999999999999974
No 19
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=3.4e-34 Score=296.23 Aligned_cols=311 Identities=23% Similarity=0.300 Sum_probs=232.7
Q ss_pred EEccCChhHHHHHHH-HHHhcCCcEEEec--CCCchhHHHHHHHHHHcCCEEEE-cCCceeEEEEeCCCCcCCccCCCCc
Q 014155 92 VTLPGSKSLSNRILL-LAALSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEE-DFAMKRAIVEGCGGLFPLAKQQTGE 167 (429)
Q Consensus 92 i~vpgsKs~s~R~L~-~aaL~~g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~-~~~~~~l~i~g~gg~~~~~~~~~~~ 167 (429)
+.+ |+...+.|+++ ++++++++++|+| .+..||+..++++|++||+++++ .++..+++|+|.. ... .
T Consensus 87 i~~-~~sg~~~r~l~~laa~~~~~~~i~g~~~l~~r~~~~l~~~L~~lGa~i~~~~~~~~~i~i~g~~---~~~-----~ 157 (435)
T PRK02427 87 LDC-GNSGTTMRLLTGLLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEGRDEGYLPLTIRGGK---KGG-----P 157 (435)
T ss_pred EEc-cCchHHHHHHHHHHHhCCCeEEEECChhhccCChHHHHHHHHHCCCEEEeCCCCCCCEEEecCC---cCc-----c
Confidence 444 45568888887 4888999999999 56789999999999999999997 3333578998731 111 2
Q ss_pred eEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeE
Q 014155 168 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (429)
Q Consensus 168 ~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~ 246 (429)
..++.+.++.....++.+.+.. ..+.+++++..++.+||+.++ +++|++||++|+..++.++.+++|+|++++++.++
T Consensus 158 ~~i~~~~ss~~~~~lll~aa~~-~~g~~~i~~~~~~~~rp~i~~~~~~L~~lG~~i~~~~~~~~~~i~I~g~~~l~~~~~ 236 (435)
T PRK02427 158 IEYDGPVSSQFVKSLLLLAPLF-AEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQRLRGQDI 236 (435)
T ss_pred EEecCCcCCHHHHHHHHHHhhc-cCCCcEEEEcCCCCCCCHHHHHHHHHHHCCCeEEeecCCcccEEEECCCcccccceE
Confidence 4566555554444333222221 124444444447889999995 99999999999842222346899998766888899
Q ss_pred EeCCCCCHHHHHHHHHhcccC-CC-ceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCcc------ceEEEeCCccccC
Q 014155 247 KLSGKLSSQYLTALLMAAPLA-LG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW------DRFFIQGGQKYKS 318 (429)
Q Consensus 247 ~i~gd~Ssq~~salllAA~~~-~g-~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~------~~i~I~g~~~l~~ 318 (429)
++++|+|+ +++++++++. .| +++|.+.. ..+.+++.+++++|++||++|+.+++. ..|+|.+ ++++
T Consensus 237 ~i~~D~ss---a~~ll~aa~~~~g~~i~i~~~~-~~~~~~~~~~l~~L~~~G~~v~~~~~~~~~~~~~~i~i~~-~~l~- 310 (435)
T PRK02427 237 TVPGDPSS---AAFFLAAAAITGGSEVTITNVG-LNSTQGGKAIIDVLEKMGADIEIENEREGGEPVGDIRVRS-SELK- 310 (435)
T ss_pred EeCCCHHH---HHHHHHHHHhCCCCeEEEeCCC-CCCCcchHHHHHHHHHcCCceEeccccccCCccCcEEEec-CCcc-
Confidence 99999998 6777776665 45 56776542 234455678999999999999865420 1488874 5676
Q ss_pred CcceeecCChhhHHH-HHHHHHccCCEEEEEccCCCCc-cch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCc
Q 014155 319 PGNAFVEGDASSASY-FVAGAAVTGGTVTVEGCGTSSL-QGD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHL 394 (429)
Q Consensus 319 ~~~~~v~~D~s~a~~-~lalAa~~~g~v~i~g~~~~~~-q~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L 394 (429)
+.+++ .+|++.+.+ ++++|++++|+++|+|+...+. ++| ..++++|++||+++++++|+++|.|. .+
T Consensus 311 ~~~~~-~~d~~d~~~~l~~~a~~a~g~~~i~~~~~~r~~e~dr~~~~~~~L~~~Ga~v~~~~~~i~i~g~--------~~ 381 (435)
T PRK02427 311 GIDID-IPDIIDEAPTLAVLAAFAEGTTVIRNAEELRVKETDRIAAMATELRKLGAEVEETEDGLIITGG--------PL 381 (435)
T ss_pred cEEee-cCCCchHHHHHHHHHHhCCCCEEEEChhhccccccHHHHHHHHHHHHCCCEEEEeCCeEEEECC--------CC
Confidence 66776 568877666 5667789999999999987664 477 57999999999999999999999975 24
Q ss_pred cceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 395 RAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 395 ~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|. +++++|||++|+++++|++++|+++|+|+.
T Consensus 382 ~~~-v~~~~d~r~a~~l~~~a~~a~g~~~i~~~~ 414 (435)
T PRK02427 382 AGV-VDSYGDHRIAMAFAIAGLAAEGPVTIDDPE 414 (435)
T ss_pred CCC-ccCCCcHHHHHHHHHHHHcCCCCEEEeccC
Confidence 777 999999999999999999999999999974
No 20
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=100.00 E-value=4.4e-33 Score=286.65 Aligned_cols=290 Identities=20% Similarity=0.210 Sum_probs=223.4
Q ss_pred HHHHHHHHHH-hcC-CcEEEec--CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCc
Q 014155 100 LSNRILLLAA-LSE-GTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNA 175 (429)
Q Consensus 100 ~s~R~L~~aa-L~~-g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~s 175 (429)
.+.|++...+ +.. ++++++| .+..||+..++++|++||++|++.++ .+.|++.+ .+... +..++.+++
T Consensus 94 ~s~~~l~~~~~~~~~~~~~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~--~~~v~~~g-~l~~~-----~~~l~~~ss 165 (417)
T PRK09369 94 ASILVLGPLLARFGEAKVSLPGGCAIGARPVDLHLKGLEALGAEIEIEHG--YVEAKADG-RLKGA-----HIVLDFPSV 165 (417)
T ss_pred hHHHHHHHHhccCCceEEEecCCCccCCCchHHHHHHHHHCCCEEEEECC--EEEEEecC-Ccccc-----eEeCCCCCH
Confidence 4445544322 223 3788887 56689999999999999999987654 34555432 22221 345666799
Q ss_pred hhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHH
Q 014155 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQ 255 (429)
Q Consensus 176 gts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq 255 (429)
++++++|++++++ ++.+++.+.. .++++..++++|++||++|+.. ++.++.|+|++.+.+.++++++|+|.
T Consensus 166 ~~~~~ll~aa~~~---~g~~~i~~~~--~~~~i~~~~~~L~~~G~~v~~~---~~~~i~I~g~~~~~~~~~~v~~D~s~- 236 (417)
T PRK09369 166 GATENILMAAVLA---EGTTVIENAA--REPEIVDLANFLNKMGAKISGA---GTDTITIEGVERLHGAEHTVIPDRIE- 236 (417)
T ss_pred HHHHHHHHHHHhC---CCcEEEeCCC--cCCcHHHHHHHHHHCCCEEEEc---CCceEEEcCCCccCCceEEecCCHHH-
Confidence 9999999887554 5567777743 4678888899999999999852 23479999976688889999999985
Q ss_pred HHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCccee------ecCChh
Q 014155 256 YLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF------VEGDAS 329 (429)
Q Consensus 256 ~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~------v~~D~s 329 (429)
++++++++++..++++|.+. +.++.+.++++|++||++|+.+++ .++|.+.+.++ +.++. +++|++
T Consensus 237 -as~ll~aa~l~~g~v~i~~~----~~~~~~~~~~~L~~~G~~v~~~~~--~i~v~~~~~l~-~~~i~~~~~p~v~~D~~ 308 (417)
T PRK09369 237 -AGTFLVAAAITGGDVTIRGA----RPEHLEAVLAKLREAGAEIEEGED--GIRVDMPGRLK-AVDIKTAPYPGFPTDMQ 308 (417)
T ss_pred -HHHHHHHHHHcCCceEEecC----ChhHHHHHHHHHHHcCCEEEEcCC--EEEEeeCCCcc-ceEEecCCCCCCHHHHH
Confidence 56677777777788888753 356778999999999999998653 78888655566 66665 334775
Q ss_pred hHHHHHHHHHccCCEEEEEc-cCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCChHH
Q 014155 330 SASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVA 408 (429)
Q Consensus 330 ~a~~~lalAa~~~g~v~i~g-~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~a 408 (429)
++|+++|++++|+.++.| +.+++ ..++++|+|||+++++++|.++|+|. ..++|.++++ +|||++
T Consensus 309 --~~l~~~aa~a~g~~~i~~~~~~~r----~~~~~~L~~mG~~i~~~~~~l~i~g~-------~~l~g~~i~~-~D~r~a 374 (417)
T PRK09369 309 --AQFMALLTQAEGTSVITETIFENR----FMHVPELIRMGADIEVDGHTAVVRGV-------EKLSGAPVMA-TDLRAS 374 (417)
T ss_pred --HHHHHHHHhCCCeEEEEecccccH----HHHHHHHHHCCCeEEEECCEEEEECC-------CCccccEEec-CcHHHH
Confidence 589999999999888875 66554 45899999999999999999999985 2588999987 799999
Q ss_pred HHHHHHHHcCCCcEEEeccc
Q 014155 409 MTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 409 m~lav~al~A~G~s~I~~a~ 428 (429)
|+++++|++++|+++|+|+.
T Consensus 375 m~~a~~a~~a~g~~~I~~~~ 394 (417)
T PRK09369 375 ASLVLAGLVAEGTTIVDRIY 394 (417)
T ss_pred HHHHHHHHcCCCcEEECChh
Confidence 99999999999999999974
No 21
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=100.00 E-value=1.4e-32 Score=285.01 Aligned_cols=312 Identities=21% Similarity=0.264 Sum_probs=227.7
Q ss_pred EEEEccCChhHHHHHHHHHHh---cCCcEEEecCC--CchhHHHHHHHHHHcCCEEEEcCC--ceeEEEEeCCCCcCCcc
Q 014155 90 GTVTLPGSKSLSNRILLLAAL---SEGTTVVDNLL--SSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFPLAK 162 (429)
Q Consensus 90 G~i~vpgsKs~s~R~L~~aaL---~~g~~~i~g~l--~~~dv~~ll~aL~~lGa~v~~~~~--~~~l~i~g~gg~~~~~~ 162 (429)
..|++ |....+.|+|+++++ .+++++++|.. .+||+..++++|++||++|++.++ ..|++|+|+++ +...
T Consensus 92 ~~i~~-g~sgt~~r~l~~~~~~~~~~~~~~~~g~~~l~~Rp~~~l~~~L~~lGa~i~~~~~~~~~pi~i~g~~~-l~~~- 168 (443)
T PLN02338 92 VELFL-GNAGTAMRPLTAAVTAAGGNASYVLDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGG-LPGG- 168 (443)
T ss_pred ceEEc-CCcchHHHHHHHHHHhCCCCceEEEECChhhccCCchHHHHHHHHCCCEEEEcCCCCcCCEEEECCCC-CCCc-
Confidence 34665 666789999876544 35899999965 699999999999999999986433 36899987643 3221
Q ss_pred CCCCceEEEecCchhhhHHHHHHHHHc-CCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCC
Q 014155 163 QQTGEIELFLGNAGTAMRPLTAAVTAA-GGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGG 240 (429)
Q Consensus 163 ~~~~~~~i~~g~sgts~r~L~a~l~a~-~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~ 240 (429)
.+.+. ...+.||+.++++++ ..++.+++.+...+.+|||.++ +++|++||++|+..+ +..+++|.+.++
T Consensus 169 ------~~~i~-g~~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p~~~~tl~~L~~~G~~i~~~~--~~~~i~i~~~~~ 239 (443)
T PLN02338 169 ------KVKLS-GSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSD--SWDRFFIKGGQK 239 (443)
T ss_pred ------eEEEC-CCCchHHHHHHHHHHhcCCCCcEEEECCCCCCccHHHHHHHHHHHcCCeEEecC--CceEEEEcCCcc
Confidence 22221 113666666655542 1245566666556789999999 999999999998642 234799987544
Q ss_pred CC-CeeEEeCCCCCHHHHHHHHHhcc-cCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCc----
Q 014155 241 LP-GGKVKLSGKLSSQYLTALLMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ---- 314 (429)
Q Consensus 241 l~-~~~~~i~gd~Ssq~~salllAA~-~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~---- 314 (429)
+. +.++.|++|+|+| +++++++ +..|+++|.+.+.....+ +..++++|++||++|+..++ .+.|.+.+
T Consensus 240 l~~~~~~~i~~D~ssa---~~~la~a~~~~g~v~i~~~~~~~~~~-d~~~l~~L~~mGa~v~~~~~--~i~i~~~~~~~~ 313 (443)
T PLN02338 240 YKSPGNAYVEGDASSA---SYFLAGAAITGGTVTVEGCGTTSLQG-DVKFAEVLEKMGAKVEWTEN--SVTVTGPPRDAF 313 (443)
T ss_pred ccCCCeEEeCCCHHHH---HHHHHHHHhcCCeEEECCCCCCCCcc-hhHHHHHHHHcCCeEEEcCC--eEEEcCCccccc
Confidence 65 5789999999985 5666655 445678888754433334 46689999999999998664 78887542
Q ss_pred ---cccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCC
Q 014155 315 ---KYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDP 388 (429)
Q Consensus 315 ---~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~ 388 (429)
.++ +.+++...+...+++++++|++++|+++|.|+...+.+ +| ..+.++|++||+++++++|+++|+|.
T Consensus 314 ~~~~l~-~~~~d~~~~~d~~~~la~aa~~a~g~s~I~~~~~lr~kesdR~~~~~~~L~~lGa~i~~~~d~l~I~g~---- 388 (443)
T PLN02338 314 GGKHLK-AIDVNMNKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPP---- 388 (443)
T ss_pred ccCCcc-ceEECcccChhHHHHHHHHHHhCCCcEEEeCchhhcccchHHHHHHHHHHHHcCCEEEEeCCEEEEECC----
Confidence 233 44433222223355666777789999999998777665 44 68999999999999999999999874
Q ss_pred CCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 389 YGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 389 ~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
..++|.+|++++|||++|+++++|+ +.++++|+|+.
T Consensus 389 ---~~l~g~~i~~~~DhR~ama~ala~l-~~~~~~i~~~~ 424 (443)
T PLN02338 389 ---KKLKPAEIDTYDDHRMAMAFSLAAC-GDVPVTINDPG 424 (443)
T ss_pred ---CCCCCCeEECCCcHHHHHHHHHHHH-cCCCEEEecCC
Confidence 2589999999999999999998887 55779999874
No 22
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=3.1e-32 Score=295.12 Aligned_cols=305 Identities=19% Similarity=0.240 Sum_probs=229.3
Q ss_pred ccCChhHHHHHHHH-HHhcCCcEEEec--CCCchhHHHHHHHHHHcCCEEEEcCC--ceeEEEEeCCCCcCCccCCCCce
Q 014155 94 LPGSKSLSNRILLL-AALSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFPLAKQQTGEI 168 (429)
Q Consensus 94 vpgsKs~s~R~L~~-aaL~~g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~--~~~l~i~g~gg~~~~~~~~~~~~ 168 (429)
..|+.+.+.|+|++ +++..+.++|+| .+..||+..++++|++||++|++.++ ..|++|+|.+ +..+ .
T Consensus 327 ~~g~sGt~~r~L~~~~a~~~g~~~i~G~~~L~~RPi~~ll~~L~~lGa~v~~~~~~~~~p~~I~g~~--~~~~------~ 398 (673)
T PRK11861 327 FLGNAGTAVRPLTAALAVNGGEYRIHGVPRMHERPIGDLVDGLRQIGARIDYEGNEGFPPLRIRPAT--ISVD------A 398 (673)
T ss_pred ecCCcchHHHHHHHHHHcCCCeEEEECChhhccCChhHHHHHHHHCCCcEEeCCCCCCCCEEEECCC--cCCC------C
Confidence 35777899998874 556788999998 46789999999999999999986532 3579998764 1111 1
Q ss_pred EEEecCchhhhHHHHHHHHHcC------CCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCCC
Q 014155 169 ELFLGNAGTAMRPLTAAVTAAG------GNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGL 241 (429)
Q Consensus 169 ~i~~g~sgts~r~L~a~l~a~~------~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l 241 (429)
.+.++ ...+.+|++++++++. +...+.+.|. ..++||.++ +++|++||++|+... ..+++|.+++.+
T Consensus 399 ~~~v~-g~~Ssq~iSalLlaa~~l~a~~~~~~i~~~g~--~~S~pyv~~t~~~L~~fG~~V~~~~---~~~i~V~~~~~~ 472 (673)
T PRK11861 399 PIRVR-GDVSSQFLTALLMTLPLVKAKDGASVVEIDGE--LISKPYIEITIKLMARFGVTVERDG---WQRFTVPAGVRY 472 (673)
T ss_pred eEEeC-CCccHHHHHHHHHHhHhhccCCCCEEEEECCc--cCCcCHHHHHHHHHHHCCCEEEEcC---CcEEEEcCCccc
Confidence 22222 1125667776665531 2223455453 347999986 999999999998642 225888765445
Q ss_pred -CCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCC----ccc
Q 014155 242 -PGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG----QKY 316 (429)
Q Consensus 242 -~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~----~~l 316 (429)
.+.+|.|++|+|+ ++.|+++|++.+|+++|++... .+.+.+..++++|++||++|+..++ .+.|.+. ..+
T Consensus 473 ~~~~~~~V~~D~Ss--Aa~~laaAal~~g~v~I~g~~~-~~~q~d~~i~~iL~~mGa~i~~~~~--~i~i~~~~~~~~~l 547 (673)
T PRK11861 473 RSPGTIMVEGDASS--ASYFLAAGALGGGPLRVEGVGR-ASIQGDVGFANALMQMGANVTMGDD--WIEVRGIGHDHGRL 547 (673)
T ss_pred CCCceeECCCChHH--HHHHHHHHHhcCCeEEECCCCC-CCCchHHHHHHHHHHcCCcEEEeCC--eEEEeeccccCCCc
Confidence 4679999999998 2445555666777899998754 4455667788999999999998764 6777652 134
Q ss_pred cCCc--ceeecCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCC
Q 014155 317 KSPG--NAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR 391 (429)
Q Consensus 317 ~~~~--~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~ 391 (429)
+ +. ++...||. +++|+++|++++|+++|+|+...+++ +| .++.++|+|||+++++.+|+++|+|+.
T Consensus 548 ~-~~~iD~~~~pDl--~p~laalaa~a~G~s~I~~v~~lr~KEsdRi~a~~~eL~klGa~v~~~~d~l~I~g~~------ 618 (673)
T PRK11861 548 A-PIDMDFNLIPDA--AMTIAVAALFADGPSTLRNIGSWRVKETDRIAAMATELRKVGATVEEGADYLVVTPPA------ 618 (673)
T ss_pred c-ceeeccccCchH--HHHHHHHHHhCCCCEEEECccccccccchHHHHHHHHHHHcCCEEEEeCCeEEEECCC------
Confidence 4 43 44567787 67999999999999999999988887 67 579999999999999999999999852
Q ss_pred CCccc-eEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 392 KHLRA-VDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 392 ~~L~g-~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
.++| .+|++|+|||++|+++++++. .++++|+|+.
T Consensus 619 -~l~~~~~v~s~~DHRiaM~~av~~l~-~~~~~i~~~~ 654 (673)
T PRK11861 619 -QLTPNASIDTYDDHRMAMCFSLVSLG-GVPVRINDPK 654 (673)
T ss_pred -CCCCCceEECCCCHHHHHHHHHHHhC-CCCEEEecCC
Confidence 5775 889999999999999999996 5779999864
No 23
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=100.00 E-value=4.4e-32 Score=279.11 Aligned_cols=286 Identities=21% Similarity=0.262 Sum_probs=215.9
Q ss_pred HHHHHhc--CC-cEEEecC--CCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhh
Q 014155 105 LLLAALS--EG-TTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAM 179 (429)
Q Consensus 105 L~~aaL~--~g-~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~ 179 (429)
+++++++ ++ ++++.|. +..||+..++++|++||++|++.++ +++|+|.+ +... ...++.+++++++
T Consensus 97 ~~~~~~~~~~~~~v~~~g~~~l~~Rp~~~~~~~L~~lGa~v~~~~~--~i~v~~~~--l~~~-----~~~ld~~ss~~~~ 167 (417)
T PRK12830 97 FMGALLGRFKKAVVGLPGGCDLGPRPIDQHIKGFEALGAEVTNEGG--AIYLKADE--LKGA-----HIYLDVVSVGATI 167 (417)
T ss_pred HHHHHhcCCCceEEEecCCCccCCCcCHHHHHHHHHCCCEEEEcCC--EEEEEeCC--ccCC-----EEECCCCCHHHHH
Confidence 3344444 55 6888874 6689999999999999999987653 68888742 2221 2457778889999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHH
Q 014155 180 RPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259 (429)
Q Consensus 180 r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~sa 259 (429)
+++++++.+ ++.+++.+. +.++++..++++|++||++++.. +..++.|+|++.+++.++++++|+++- ++
T Consensus 168 ~ll~a~~~~---~g~~~i~~~--~~~~~i~~l~~~L~~~G~~i~~~---~~~~i~I~g~~~~~~~~~~v~~d~~sa--~~ 237 (417)
T PRK12830 168 NIMLAAVKA---KGRTVIENA--AKEPEIIDVATLLNNMGANIKGA---GTDVIRIEGVDELHGCRHTVIPDRIEA--GT 237 (417)
T ss_pred HHHHHHHcC---CCeEEEccC--CcCCcHHHHHHHHHHCCCEEEEc---CCcEEEEccCCcccCcEEeeCCCcHHH--HH
Confidence 888877643 456667663 55778888899999999999852 234799999767888899988887761 33
Q ss_pred HHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcce---eecCChhh-HHHHH
Q 014155 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNA---FVEGDASS-ASYFV 335 (429)
Q Consensus 260 lllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~---~v~~D~s~-a~~~l 335 (429)
++++++...++++|++. . ..+.+.++++|++||++|+.+++ .|.|.+.++++ +.++ .+|+|.+. +++++
T Consensus 238 ~l~~aa~~~~~~~i~~~---~-~~~~~~~~~~L~~~G~~i~~~~~--~i~v~~~~~l~-~~~i~~~~~p~~~~D~~~~la 310 (417)
T PRK12830 238 YMILAAACGGGVTINNV---I-PEHLESFIAKLEEMGVRVEVNED--SIFVEKQGNLK-AVDIKTLPYPGFATDLQQPLT 310 (417)
T ss_pred HHHHHHHhCCCEEEeCC---C-hhHHHHHHHHHHHCCCEEEEcCC--EEEEEeCCCcc-ceeeccCCCCCChHHHHHHHH
Confidence 45444445577777653 2 34778999999999999998664 78888755676 5544 35663322 34666
Q ss_pred HHHHccCCEEEEE-ccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCChHHHHHHHH
Q 014155 336 AGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVV 414 (429)
Q Consensus 336 alAa~~~g~v~i~-g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~am~lav~ 414 (429)
++|++++|+.++. |+.+.+. ++.++|+|||+++++++|+++|+|+ .+|+|.++++ +|||++|+++++
T Consensus 311 a~a~~a~g~~~i~~~~~~~r~----~~~~~L~~mGa~i~~~~~~l~i~g~-------~~l~g~~v~~-~D~r~am~lav~ 378 (417)
T PRK12830 311 PLLLKANGRSVVTDTIYEKRF----KHVDELKRMGANIKVEGRSAIITGP-------SKLTGAKVKA-TDLRAGAALVIA 378 (417)
T ss_pred HHHHcCCCcEEEEeccchhhH----HHHHHHHHCCCeEEEECCEEEEECC-------CCccCceecC-CchHHHHHHHHH
Confidence 7778888877777 7766554 5789999999999999999999975 2589999998 789999999999
Q ss_pred HHcCCCcEEEeccc
Q 014155 415 ALFADGPTAIRDGM 428 (429)
Q Consensus 415 al~A~G~s~I~~a~ 428 (429)
|++++|+++|+|+.
T Consensus 379 a~~a~g~~~I~~~~ 392 (417)
T PRK12830 379 GLMAEGVTEITNIE 392 (417)
T ss_pred HHcCCCcEEECChh
Confidence 99999999999974
No 24
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=100.00 E-value=1.4e-31 Score=274.14 Aligned_cols=322 Identities=21% Similarity=0.238 Sum_probs=231.5
Q ss_pred ceEEEccCCceeE--EE-EccCChhHHHHHHHH-HHhcCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEcCCce--eE
Q 014155 78 SEIVLQPIREISG--TV-TLPGSKSLSNRILLL-AALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMK--RA 149 (429)
Q Consensus 78 ~~~~i~p~~~l~G--~i-~vpgsKs~s~R~L~~-aaL~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~~~~--~l 149 (429)
..+.|++...... +. ...|+...+.|++++ ++++++++.|+|. +.+||+..++++|++||++|+..++.. ++
T Consensus 58 ~~~~i~g~~~~~~~~~~~i~~~~s~~s~~~l~~l~~~~~~~~~i~g~~~l~~~~~~~~~~~L~~lGa~i~~~~~~~~~~i 137 (409)
T cd01556 58 GTVEIVGGGGLGLPPEAVLDCGNSGTTMRLLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREGGGYPPL 137 (409)
T ss_pred CEEEEEcCCCCCCCCCceEEcCCchHHHHHHHHHHHcCCCeEEEECCcccccCChHHHHHHHHHCCCEEEeCCCCCCCCe
Confidence 3466766422221 22 234566688898875 4578999999995 788999999999999999999765421 22
Q ss_pred EEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHc-CCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCC
Q 014155 150 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA-GGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILG 227 (429)
Q Consensus 150 ~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~-~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~ 227 (429)
+.+ + .+... ...+..+ .+.|++.++++++ ..++.+++.+. ++.++|+.++ +++|++||++|+..+
T Consensus 138 -~~~-~-~~~~~-----~~~i~~~---~ss~~~~~ll~aa~l~~g~~~i~~~-~~~~~~~i~~~~~~L~~lGa~i~~~~- 204 (409)
T cd01556 138 -IGG-G-GLKGG-----EVEIPGA---VSSQFKSALLLAAPLAEGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDG- 204 (409)
T ss_pred -eec-C-CCCCc-----EEEeCCC---CccHHHHHHHHHHhcCCCceEEEee-CCCCcCHHHHHHHHHHHcCCcEEecC-
Confidence 332 2 12111 1223322 2444444433221 12466777776 6788998666 999999999998743
Q ss_pred CCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcc-cCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccc
Q 014155 228 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 306 (429)
Q Consensus 228 ~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~-~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~ 306 (429)
..+++|++++++.+.++.+++|+|+ ++++++++ +.++.++|.+.. +.+++..++++|++||++++..++ +
T Consensus 205 --~~~i~I~~~~~l~~~~i~i~~d~s~---~~~l~~~a~~~~~~v~i~~~~---~~~~~~~~~~~L~~~G~~i~~~~~-~ 275 (409)
T cd01556 205 --YRTITVKGGQKYKGPEYTVEGDASS---AAFFLAAAAITGSEIVIKNVG---LNSGDTGIIDVLKEMGADIEIGNE-D 275 (409)
T ss_pred --CcEEEECCCCccccCeeEeCCcHHH---HHHHHHHHHhcCCeEEEcCCC---CCChHHHHHHHHHHCCCeEEEcCC-C
Confidence 1269998865788889999999987 56665554 445567777643 445789999999999999997652 4
Q ss_pred eEEEeCCccccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeC
Q 014155 307 RFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTG 383 (429)
Q Consensus 307 ~i~I~g~~~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g 383 (429)
.+.|.|.+.++ +.++....+...+++++++|++++|+++|+|+...+.+ +| ..+.++|++||+++++++|+++|+|
T Consensus 276 ~i~i~~~~~~~-~~~v~~~~~~d~~~~la~~a~~a~g~~~i~~~~~~~~~~s~r~~~~~~~L~~lG~~i~~~~~~l~i~g 354 (409)
T cd01556 276 TVVVESGGKLK-GIDIDGNDIPDEAPTLAVLAAFAEGPTRIRNAAELRVKESDRIAAMATELRKLGADVEETEDGLIIEG 354 (409)
T ss_pred eEEEccCCCcC-ceEeccccCchHHHHHHHHHHhCCCCEEEEChhhhccccchHHHHHHHHHHHcCCEEEEECCEEEEEC
Confidence 79998765555 55543332233366667688899999999998766543 54 6799999999999999999999998
Q ss_pred CCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 384 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 384 ~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
.. ..+.+.++++++|||++|++++++++++|+++|+|+.
T Consensus 355 ~~------~~~~~~~~~~~~d~r~~~~~~~~~~~~~~~~~i~~~~ 393 (409)
T cd01556 355 GP------LKGAGVEVYTYGDHRIAMSFAIAGLVAEGGVTIEDPE 393 (409)
T ss_pred CC------CCCCCceecCCCCHHHHHHHHHHHhcCCCCEEEcccC
Confidence 63 1467788999999999999999999999999999975
No 25
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=100.00 E-value=2.5e-32 Score=281.20 Aligned_cols=307 Identities=24% Similarity=0.303 Sum_probs=228.1
Q ss_pred EEEccCChhHHHHHHHH-HHhcCCcEEEec--CCCchhHHHHHHHHHHcCCEEEEcCC--ceeEEEEeCCCCcCCccCCC
Q 014155 91 TVTLPGSKSLSNRILLL-AALSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFPLAKQQT 165 (429)
Q Consensus 91 ~i~vpgsKs~s~R~L~~-aaL~~g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~--~~~l~i~g~gg~~~~~~~~~ 165 (429)
.+.+ |....+.|+|+. ++..++.+++.| .+..||++.++++|++||+++++.++ ..|+.|+|.. ..
T Consensus 85 ~i~~-g~Sgt~lr~L~~~~~~~~~~~~~~G~~~l~~RP~~~l~~~L~~lGa~i~~~~~~~~~pi~i~~~~----~~---- 155 (419)
T PF00275_consen 85 VIDV-GNSGTTLRFLLALLALAPGPVTFTGDCSLGKRPMDPLLDALRQLGARISYLNGEGFLPIRIRGLK----GG---- 155 (419)
T ss_dssp HEEE-CCGHHHHHHHHHHHSEESSEEEEECSBTGGGSTCHHHHHHHHHTTEEEEEETTEEEEEECEEESS----SB----
T ss_pred ceee-ccChhHHhHHHHHHheeeEEEEEeccchhhhCCHHHHHHHHhhCCCEEEEecCCceEEEEEeecc----cC----
Confidence 4454 777799999874 556788999998 46789999999999999999998765 3578887721 11
Q ss_pred CceEEEecCchhhhHHHHHHHHHc--CCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCC-C
Q 014155 166 GEIELFLGNAGTAMRPLTAAVTAA--GGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGG-L 241 (429)
Q Consensus 166 ~~~~i~~g~sgts~r~L~a~l~a~--~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~-l 241 (429)
...+... .++++++++++++ ..++++++.+ ..++||.++ +++|++||++|+...+. ..+.|.|.+. +
T Consensus 156 -~~~i~~~---~sSq~vs~lll~A~~~a~g~i~i~~---~~s~p~i~~t~~~L~~~G~~i~~~~~~--~~~~i~g~~~~~ 226 (419)
T PF00275_consen 156 -PIEIDGD---ISSQFVSALLLAAALLARGEITIIN---PASEPYIDMTIDMLKKFGAKIEVDGDE--NIISIPGGQYIL 226 (419)
T ss_dssp -EEEEETS---SSHHHHHHHHHHHHTTSBSEEEEES---ESSSHHHHHHHHHHHHTT-EEEETTST--TEEEEETTSSBB
T ss_pred -cEEEecc---CCCHHHHHHHHHHHHhcCCceEEeC---CCCCCcHHHHHHHHhhceEEEEEccCC--cEEEEEeccccc
Confidence 2333322 1344444433322 1245888887 458899888 99999999999984322 1489999876 5
Q ss_pred CCeeEEeCCCCCHHHHHHHHHhc-ccCCCceEEEEccccCCchHHHHHHH-HHHHcCCeEEEcCccceEEEeCCccccCC
Q 014155 242 PGGKVKLSGKLSSQYLTALLMAA-PLALGNVEIEIIDKLISVPYVEMTLK-LMERFGVFVEHSDSWDRFFIQGGQKYKSP 319 (429)
Q Consensus 242 ~~~~~~i~gd~Ssq~~salllAA-~~~~g~~~I~~~~~~~s~~~~~~tl~-~L~~~G~~i~~~~~~~~i~I~g~~~l~~~ 319 (429)
++.+|+|++|+|+ +++|+++ ++..|+++|++... .+.+.+...++ +|++||++|+.+++ ..+.+.+. .+. +
T Consensus 227 ~~~~~~v~~D~s~---Aa~~l~aa~l~~g~v~i~~~~~-~~~~gd~~~l~~iL~~mG~~i~~~~~-~~~~~~~~-~~~-~ 299 (419)
T PF00275_consen 227 PGCEYTVPGDWSS---AAFFLAAAALTGGEVTIKNLPP-NSLQGDKEFLDDILRRMGAKIEEEDD-GVIVVGGS-GLR-G 299 (419)
T ss_dssp BSEEEE--B-HHH---HHHHHHHHHHCTTEEEEESEEG-GGGHHHHHHHHHHHHHTTEEEEEESE-EEEEEEET-TSB-E
T ss_pred cceeEEecCCHHH---HHHHHHHHheeCcEEEEEecCc-hhhhhhHHHHHHHHHHhCCCcccCCC-eeEEEecc-ccc-c
Confidence 6669999999998 7766665 45667899988753 56667777888 99999999998875 34555543 333 4
Q ss_pred cceeecCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccc
Q 014155 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 396 (429)
Q Consensus 320 ~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g 396 (429)
.++++...+..++++.++++++.|++++.|+.+.+.+ +| ..++++|+|||+++++.+|.+.|+|.. .+++|
T Consensus 300 ~~~di~~~pd~~p~l~~~a~~a~g~t~~~g~~~lr~kesdR~~~~~~~L~klG~~~~~~~d~l~i~~~~------~~~~g 373 (419)
T PF00275_consen 300 IEIDISDAPDLAPTLAVLAAFAEGETRISGVSHLRDKESDRIEAIVEELRKLGADIEEDGDGLIIHGGR------PPLKG 373 (419)
T ss_dssp BEEEEEBCSTTCHHHHHHHHHHHHHEEEESEEEEEGSSSTTHHHHHHHHHHTTSEEEEETTEEEEEEES------E-CBS
T ss_pred cccccccCccchhHHHHHHHHhhcceeccccceeeeehHhhHHHHHHHHhhcCCCEEEECCEEEEECCc------cCCCC
Confidence 4454443333367888999999999999999887766 66 789999999999999999999988762 14899
Q ss_pred eEEeCCCCChHHHHHHHHHHcCCC-cEEEeccc
Q 014155 397 VDVNMNKMPDVAMTLAVVALFADG-PTAIRDGM 428 (429)
Q Consensus 397 ~~v~~~~~pr~am~lav~al~A~G-~s~I~~a~ 428 (429)
.+|++++|||++|+++++|+.++| +++|+|+.
T Consensus 374 ~~v~s~~DhRiaMa~~va~l~~~g~~~~I~~~~ 406 (419)
T PF00275_consen 374 AEVDSYNDHRIAMALAVAALAAKGEPITIENAE 406 (419)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHSBSSEEEEETTH
T ss_pred cEEEecHHHHHHHHHHHHhcccCCCeEEEcccc
Confidence 999999999999999999999999 99999974
No 26
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=100.00 E-value=4.6e-31 Score=270.05 Aligned_cols=276 Identities=21% Similarity=0.261 Sum_probs=211.4
Q ss_pred cEEEec--CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCC
Q 014155 114 TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGG 191 (429)
Q Consensus 114 ~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~ 191 (429)
.+.++| -+..||++.++++|++||++|++.++ .+.|++.+ .+... ...++.++++++++++++++.+
T Consensus 99 ~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~~--~~~v~~~~-~~~~~-----~~~i~~~~~~~~~~ll~aa~~~--- 167 (400)
T cd01555 99 RVSLPGGCAIGARPVDLHLKGLEALGAKIEIEDG--YVEAKAAG-RLKGA-----RIYLDFPSVGATENIMMAAVLA--- 167 (400)
T ss_pred EEEEcCCCccccCCHHHHHHHHHHCCCEEEEeCC--EEEEecCC-Cccce-----EEECCCCCHHHHHHHHHHHHhC---
Confidence 456666 56789999999999999999998765 34554322 22211 2355557788888888887554
Q ss_pred CeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCce
Q 014155 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNV 271 (429)
Q Consensus 192 ~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~ 271 (429)
++.+++.+. ..++++..+++.|++||++|+... ..++.|.|++.+++.++.+++|+++ ++++++++++++|++
T Consensus 168 ~g~~~i~~~--~~~~~i~~~~~~L~~~G~~v~~~~---~~~i~I~g~~~l~~~~~~~~~D~~~--a~~~l~aa~~~~g~~ 240 (400)
T cd01555 168 EGTTVIENA--AREPEIVDLANFLNKMGAKIEGAG---TDTIRIEGVERLHGAEHTVIPDRIE--AGTFLVAAAITGGDI 240 (400)
T ss_pred CCeEEEecc--cCCccHHHHHHHHHHCCCEEEEcC---CceEEEeCCCCCCCcEEEecCCHHH--HHHHHHHHHHhCCcE
Confidence 556677664 345566678999999999998622 2379999876788889999999875 345667777778889
Q ss_pred EEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCc-cccCCccee------ecCChhhHHHHHHHHHccCCE
Q 014155 272 EIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ-KYKSPGNAF------VEGDASSASYFVAGAAVTGGT 344 (429)
Q Consensus 272 ~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~-~l~~~~~~~------v~~D~s~a~~~lalAa~~~g~ 344 (429)
+|++.+ .++...+++.|++||++|+..++ .++|.+.+ +++ +.++. ++.|+. ++++++|++++|+
T Consensus 241 ~i~~~~----~~~~~~~~~~L~~~G~~i~~~~~--~i~i~~~~~~l~-~~~i~~~~~p~~~~D~~--~~l~~~a~~~~g~ 311 (400)
T cd01555 241 TVENVI----PEHLEAVLAKLREMGAKIEIGED--GIRVDGDGGRLK-AVDIETAPYPGFPTDLQ--AQFMALLTQAEGT 311 (400)
T ss_pred EEeCCC----hhHHHHHHHHHHHCCCEEEEcCC--EEEEEcCCCCce-eeeeecCcCCCCHHHHH--HHHHHHHHhCCCe
Confidence 997542 35667899999999999998764 79998764 566 55554 344774 5888999999888
Q ss_pred EEEEc-cCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEE
Q 014155 345 VTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTA 423 (429)
Q Consensus 345 v~i~g-~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~ 423 (429)
.++.| +.+. |..+.++|++||+++++++|.++|.|. .+++|.+|+++ |||++|+++++|++++|+++
T Consensus 312 ~~~~~~~~~~----r~~~~~~L~~lGa~i~~~~~~l~i~g~-------~~l~~~~v~~~-D~r~ama~a~~a~~~~g~~~ 379 (400)
T cd01555 312 SVITETIFEN----RFMHVDELNRMGADIKVEGNTAIIRGV-------TKLSGAPVMAT-DLRAGAALVLAGLAAEGETI 379 (400)
T ss_pred EEEEeeehhh----hhHHHHHHHHcCCeEEEECCEEEEECC-------CcccCceEecC-chHHHHHHHHHHHcCCCcEE
Confidence 88876 5443 345999999999999999999999984 25788899998 99999999999999999999
Q ss_pred Eeccc
Q 014155 424 IRDGM 428 (429)
Q Consensus 424 I~~a~ 428 (429)
|+|+.
T Consensus 380 i~~~~ 384 (400)
T cd01555 380 ISNIY 384 (400)
T ss_pred EcChh
Confidence 99975
No 27
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=100.00 E-value=3e-31 Score=272.70 Aligned_cols=309 Identities=18% Similarity=0.203 Sum_probs=230.2
Q ss_pred eEEEccCCceeEEEEccCChhHHHHHHH---HHHhcCC---cEEEec--CCCchhHHHHHHHHHHcCCEEEEcCCceeEE
Q 014155 79 EIVLQPIREISGTVTLPGSKSLSNRILL---LAALSEG---TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAI 150 (429)
Q Consensus 79 ~~~i~p~~~l~G~i~vpgsKs~s~R~L~---~aaL~~g---~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~ 150 (429)
.+.|++... +.+.+|++++...|..+ +++++.+ +..+.| .+..||+..++++|++||+++++.++ .+.
T Consensus 70 ~~~i~g~~~--~~~~~~~~~s~~~ra~~~~~~~~la~~~~~~~~~~g~~~~~~rp~~~~i~~L~~~G~~v~~~~~--~~~ 145 (416)
T TIGR01072 70 TLEINTPNI--NSTEAPYELVRKMRASILVLGPLLARFGKAVVSLPGGCAIGARPVDLHLKGLKALGAEIVIEDG--YVY 145 (416)
T ss_pred EEEEECCCC--CCCCCCHHHHhhhhHHHHHHHHHhccCCceEEEecCCCccCCCCHHHHHHHHHHCCCEEEEECC--EEE
Confidence 477776432 36788999988888332 3345532 566766 36789999999999999999988764 345
Q ss_pred EEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCc
Q 014155 151 VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNC 230 (429)
Q Consensus 151 i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~ 230 (429)
|++.+ .+... ...++..+++++.+++++++++ ++.+++.+. ..++++..+++.|++||++|+..+ .
T Consensus 146 v~~~~-~l~~~-----~~~l~~~~s~~~~~ll~aa~~~---~~~~~i~~~--~~~~~i~~~~~~L~~~G~~v~~~~---~ 211 (416)
T TIGR01072 146 ASAKG-RLVGA-----HIVLDKVSVGATENIIMAAVLA---EGTTVIENA--AREPEIVDLCEFLNKMGAKITGAG---S 211 (416)
T ss_pred EEecC-cceee-----EEecCCCCHHHHHHHHHHHHhC---CCcEEEecC--CcCcCHHHHHHHHHHCCCEEEEcC---C
Confidence 55432 22211 2355556778888888887754 455667664 457777778999999999998422 2
Q ss_pred CcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEE
Q 014155 231 PPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI 310 (429)
Q Consensus 231 ~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I 310 (429)
.++.|.+++.+++.++++++|+++ .++++++++++.|+++|.+.+ ..+.+.++++|++||++|+..++ .|.|
T Consensus 212 ~~l~I~g~~~~~~~~~~v~~D~~~--a~~~l~a~~l~~g~~~i~~~~----~~~~~~~~~~L~~~G~~v~~~~~--~i~v 283 (416)
T TIGR01072 212 NTITIEGVEKLHGTEHSVIPDRIE--AGTFLVAAAITGGEITIKNVR----PDHLRAVLAKLREIGAEVEVDEN--GIRV 283 (416)
T ss_pred CEEEEeCCCcccCcEEEEcCCHHH--HHHHHHHHHHcCCeEEEEecC----chHHHHHHHHHHHCCCEEEEcCC--EEEE
Confidence 379999876688889999999876 245666666777888897643 34567899999999999998764 7888
Q ss_pred eCC-ccccCCccee------ecCChhhHHHHHHHHHccCCEEEEEc-cCCCCccchHHHHHHHHHcCCEEEEeCCeEEEe
Q 014155 311 QGG-QKYKSPGNAF------VEGDASSASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVT 382 (429)
Q Consensus 311 ~g~-~~l~~~~~~~------v~~D~s~a~~~lalAa~~~g~v~i~g-~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~ 382 (429)
.+. ++++ +.++. +++|+. ++++++|++++|+.++.| +.++ |..++++|++||+++++.+|.++|+
T Consensus 284 ~~~~~~l~-~~~i~~~~~p~v~~D~~--~~l~~la~~a~g~~~i~~~~~~~----r~~~~~~L~~~Ga~i~~~~~~l~i~ 356 (416)
T TIGR01072 284 DMRQKRLK-AVDIETLPYPGFPTDLQ--AQFMALLSQAEGTSVITETVFEN----RFMHVDELIRMGANIKLEGNTAVIH 356 (416)
T ss_pred EecCCCcc-eeEecCCCCCCChHHHH--HHHHHHHHcCCCeEEEEeeeccc----HHHHHHHHHHCCCeEEEECCEEEEE
Confidence 764 4566 55554 334664 457888889999999988 4433 3458999999999999999999999
Q ss_pred CCCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 383 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 383 g~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
|. ..++|.++++ +|||++|+++++|++++|+++|+|+.
T Consensus 357 g~-------~~l~g~~~~~-~D~r~am~~a~aa~~~~g~~~I~~~~ 394 (416)
T TIGR01072 357 GV-------EQLSGAEVMA-TDLRAGAALVLAGLVAEGETIVHNVY 394 (416)
T ss_pred CC-------CCCcCCeecC-CCHHHHHHHHHHHHcCCCcEEECCHh
Confidence 85 2588888987 78999999999999999999999875
No 28
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=99.97 E-value=3.5e-29 Score=256.74 Aligned_cols=303 Identities=18% Similarity=0.189 Sum_probs=222.5
Q ss_pred EEEccCChhHHHHHHHHHHhc-CCcEEEecC--CCchhHHHHHHHHHHcCCEEEEcCCc--eeEEEEeCCCCcCCccCCC
Q 014155 91 TVTLPGSKSLSNRILLLAALS-EGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAM--KRAIVEGCGGLFPLAKQQT 165 (429)
Q Consensus 91 ~i~vpgsKs~s~R~L~~aaL~-~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~~~--~~l~i~g~gg~~~~~~~~~ 165 (429)
.+.+ |+.+.+.|+++++++. .+++.+.|. +..||+..++++|++||+++++.++. .++++.+. ....
T Consensus 76 ~~~~-g~s~~~~~~l~a~~~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~~~~~~~~~---~~~~---- 147 (408)
T cd01554 76 ALNL-GNSGTAIRLISGVLAGADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDLPPLLKGGK---NLGP---- 147 (408)
T ss_pred eEEc-cCccHHHHHHHHHHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCcCCEEEecC---CCCC----
Confidence 5666 6777888888766654 578999995 45799999999999999999886543 35555432 1111
Q ss_pred CceEEEecCchhhhHHHHHHHHHc-CCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCe
Q 014155 166 GEIELFLGNAGTAMRPLTAAVTAA-GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (429)
Q Consensus 166 ~~~~i~~g~sgts~r~L~a~l~a~-~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~ 244 (429)
.++... ..+.+++.++++++ ..++.+++.+. ..+.++..++++|++||++|+..+ +..+.|.|.+++.+.
T Consensus 148 ---~i~~~~-~~s~q~~~~ll~aa~~~~g~~~i~~~--~~~~~i~~~~~~L~~~G~~i~~~~---~~~i~I~g~~~~~~~ 218 (408)
T cd01554 148 ---IHYEDP-IASAQVKSALMFAALLAKGETVIIEA--AKEPTINHTENMLQTFGGHISVQG---TKKIVVQGPQKLTGQ 218 (408)
T ss_pred ---eEEeCC-cccHHHHHHHHHHHhcCCCceEEEEe--CCCCCHHHHHHHHHHCCCEEEecC---CcEEEECCCcccccc
Confidence 222211 11233433333221 12455666664 345556666999999999998642 125899987678877
Q ss_pred eEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceee
Q 014155 245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFV 324 (429)
Q Consensus 245 ~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v 324 (429)
++.+++|++++ +.+++++.+..++++|++.+. .+ ++..++++|++||++++..++ .+.|+++ .++ +.++..
T Consensus 219 ~~~i~~D~~~a--~~~l~~~~l~~~~v~i~~~~~-~~--~~~~~~~~L~~~G~~v~~~~~--~i~v~~~-~~~-~~~i~~ 289 (408)
T cd01554 219 KYVVPGDISSA--AFFLVAAAIAPGRLVLQNVGI-NE--TRTGIIDVLRAMGAKIEIGED--TISVESS-DLK-ATEICG 289 (408)
T ss_pred eEEeCCChhHH--HHHHHHHhhcCCeEEEecCCC-Cc--hhhHHHHHHHHcCCEEEEeCC--eEEEecC-Cce-eEEecc
Confidence 89999999982 445555555667799987653 23 678899999999999998764 6888764 454 555533
Q ss_pred -----cCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccc
Q 014155 325 -----EGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 396 (429)
Q Consensus 325 -----~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g 396 (429)
++|. .++++++|++++|+++|.|+...+.+ +| ..+.++|+|||++++.+++.++|+|.. .++|
T Consensus 290 ~~~~~~~d~--~p~l~~~a~~a~g~~~i~~~~~lr~ke~dr~~~~~~~L~~~G~~i~~~~~~l~i~g~~-------~l~g 360 (408)
T cd01554 290 ALIPRLIDE--LPIIALLALQAQGTTVIKDAEELKVKETDRIFVVADELNSMGADIEPTADGMIIKGKE-------KLHG 360 (408)
T ss_pred ccCCCCchH--HHHHHHHHHcCCCcEEEECcccccccchhhHHHHHHHHHHcCCEEEEECCEEEEECCC-------CCCC
Confidence 3443 57888999999999999999886765 56 457999999999999999999999862 5788
Q ss_pred eEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 397 VDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 397 ~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
.++++++|||++|+++++|++++|+++|+|+.
T Consensus 361 ~~v~~~~D~r~~ma~~i~al~~~~~~~i~~~~ 392 (408)
T cd01554 361 ARVNTFGDHRIGMMTALAALVADGEVELDRAE 392 (408)
T ss_pred CEEecCCCHHHHHHHHHHHhcCCCCEEEeccc
Confidence 89999999999999999999999999999975
No 29
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.97 E-value=3.9e-30 Score=278.08 Aligned_cols=311 Identities=20% Similarity=0.204 Sum_probs=229.7
Q ss_pred EEEccCChhHHHHHHH-HHHhcCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEcCC--ceeEEEEeCCCCcC-CccCC
Q 014155 91 TVTLPGSKSLSNRILL-LAALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFA--MKRAIVEGCGGLFP-LAKQQ 164 (429)
Q Consensus 91 ~i~vpgsKs~s~R~L~-~aaL~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~~--~~~l~i~g~gg~~~-~~~~~ 164 (429)
.|. .|+.+.+.|+|+ ++++.+|.++|+|. +.+||+..++++|++||++|++.++ ..|++|+|.. +. ..
T Consensus 89 ~i~-~g~sGtt~r~Ll~~~al~~g~~~i~g~~~L~~RP~~~Ll~~L~~lGa~v~~~~~~g~~pi~I~g~~--l~~g~--- 162 (661)
T PRK11860 89 DLF-LGNAGTAMRPLTAALALLGGEYELSGVPRMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIGPAP--LRLDA--- 162 (661)
T ss_pred eEE-eCCchHHHHHHHHHHHcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEEcCCCCcccEEEECCC--cCCCc---
Confidence 344 467777789887 56688999999994 5599999999999999999986542 3578888632 21 11
Q ss_pred CCceEEEecCchhhhH----HHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCC
Q 014155 165 TGEIELFLGNAGTAMR----PLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKG 239 (429)
Q Consensus 165 ~~~~~i~~g~sgts~r----~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~ 239 (429)
...+. ++ .+.+ +|+++.++ ....+++.+.....++|+.++ +++|++||++|+..+. ..++|.+.+
T Consensus 163 --~i~i~-gd--~SSq~~SalLlAA~~~--~g~~~~I~~~~~~~s~~~i~~t~~~L~~~G~~v~~~~~---~~i~v~~~~ 232 (661)
T PRK11860 163 --PIRVR-GD--VSSQFLTALLMALPLV--ARRDITIEVVGELISKPYIEITLNLLARFGIAVQREGW---QRFTIPAGS 232 (661)
T ss_pred --eEEEc-CC--CcHHHHHHHHHHHHhC--CCCCeEEEeCCCCCCCCHHHHHHHHHHHCCCEEEecCC---cEEEEcCCc
Confidence 11221 22 1233 34444433 123455555434558899888 9999999999986322 137887654
Q ss_pred CCC-CeeEEeCCCCCHHHHHHHHHhcc-cCCC-ceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCC-cc
Q 014155 240 GLP-GGKVKLSGKLSSQYLTALLMAAP-LALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG-QK 315 (429)
Q Consensus 240 ~l~-~~~~~i~gd~Ssq~~salllAA~-~~~g-~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~-~~ 315 (429)
++. +.+|.|++|+|+ ++++++++ ++.| +++|+++.. .+.+.+..+++.|++||++++..++ .+.|.+. .+
T Consensus 233 ~l~~~~~~~V~~D~s~---a~~l~aaaa~~~G~~v~i~~v~~-~~~q~d~~il~~L~kmGa~i~~~~~--~i~i~~~~~~ 306 (661)
T PRK11860 233 RYRSPGEIHVEGDASS---ASYFIAAGAIAGGAPVRIEGVGR-DSIQGDIRFAEAARAMGAQVTSGPN--WLEVRRGAWP 306 (661)
T ss_pred ccCCCceeEcCCCHHH---HHHHHHHHHhCCCCeEEECCCCC-CCCccHHHHHHHHHHcCCEEEEeCC--EEEEEecCCC
Confidence 564 568999999998 56666554 5566 688888753 3456677899999999999998774 7888764 24
Q ss_pred ccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCC
Q 014155 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK 392 (429)
Q Consensus 316 l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~ 392 (429)
++ +.+++...|+..++.++++|++++|+++|+|+...+.+ +| ..+.++|++||++++..+|++.|+|.+.. .
T Consensus 307 l~-g~~id~~~~pdi~p~Lavla~~a~G~s~I~~v~~lr~KEsdRi~~~~~~L~~LGa~i~~~~d~l~I~g~~~~----~ 381 (661)
T PRK11860 307 LK-AIDLDCNHIPDAAMTLAVMALYADGTTTLRNIASWRVKETDRIAAMATELRKLGATVEEGADYIRVTPPAQA----A 381 (661)
T ss_pred Cc-ceEEcCcCChHHHHHHHHHHHhCCCcEEEeChhHhhhchhhHHHHHHHHHHHCCCEEEEeCCeEEEECCCcc----c
Confidence 55 55565555665688888999999999999999987777 67 47999999999999999999999985210 1
Q ss_pred CccceEEeCCCCChHHHHHHHHHHcC-CCcEEEeccc
Q 014155 393 HLRAVDVNMNKMPDVAMTLAVVALFA-DGPTAIRDGM 428 (429)
Q Consensus 393 ~L~g~~v~~~~~pr~am~lav~al~A-~G~s~I~~a~ 428 (429)
.++|.++++++|||++|+++++++.+ +++++|+|+.
T Consensus 382 ~~~g~~v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~ 418 (661)
T PRK11860 382 DWKAAAIHTYDDHRMAMCFSLAAFNPAGLPVRINDPK 418 (661)
T ss_pred CCCCccccCCccHHHHHHHHHHHHcCCCCCEEEeccC
Confidence 37888999999999999999999995 6678899875
No 30
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.2e-27 Score=234.72 Aligned_cols=267 Identities=22% Similarity=0.282 Sum_probs=220.4
Q ss_pred CchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCC
Q 014155 122 SSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201 (429)
Q Consensus 122 ~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~ 201 (429)
-.||++.+++.|++||++|+.+++ .+..+..++ +... ...++.-+.|.+...++|+.++ +++++|.+..
T Consensus 120 G~RPvDlHl~gleaLGA~i~~e~g--~i~a~a~~~-L~G~-----~I~ld~~SVGATenimmAA~lA---~G~TvIeNAA 188 (421)
T COG0766 120 GARPVDLHLKGLEALGAEIEIEHG--YIEASAPKG-LKGA-----HIYLDKVSVGATENIMMAAVLA---EGTTVIENAA 188 (421)
T ss_pred CCCchhHHHHHHHHcCCEEEEcCC--EEEEEccCC-ccce-----EEEecCCcccHHHHHHHHHHhc---CCcEEEeecc
Confidence 356999999999999999998754 556655543 2221 2455566788999999998886 7788898875
Q ss_pred CCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCC-CCHHHHHHHHHhcccCCCceEEEEccccC
Q 014155 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGK-LSSQYLTALLMAAPLALGNVEIEIIDKLI 280 (429)
Q Consensus 202 ~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd-~Ssq~~salllAA~~~~g~~~I~~~~~~~ 280 (429)
+ ++.+.|+.++|++||++|+.. |...++|+|..++.+.+++|-+| +.. .+|++||++..|+++|++.
T Consensus 189 ~--EPEIvDLa~~Ln~MGA~I~Ga---GT~~I~I~GV~~L~g~~h~VipDRIEA---GT~~~aaA~tgg~v~i~~v---- 256 (421)
T COG0766 189 R--EPEIVDLANFLNKMGAKIEGA---GTSTITIEGVEKLHGAEHSVIPDRIEA---GTFLVAAAITGGDVTIENV---- 256 (421)
T ss_pred c--CchHHHHHHHHHHcCCeeEEc---CCCeEEEeccccccceeeEecCchhhH---HHHHHHHHHhCCcEEEeCC----
Confidence 4 999999999999999999863 33469999998999999999988 665 7899999999999999975
Q ss_pred CchHHHHHHHHHHHcCCeEEEcCccceEEEeCCc-cccCCcce------eecCChhhHHHHHHHHHccCCEEEEEc-cCC
Q 014155 281 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ-KYKSPGNA------FVEGDASSASYFVAGAAVTGGTVTVEG-CGT 352 (429)
Q Consensus 281 s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~-~l~~~~~~------~v~~D~s~a~~~lalAa~~~g~v~i~g-~~~ 352 (429)
...+.+.++..|+++|++++..++ .++|...+ .++ +.++ -+|.|+. +.|+++.+.++|++.|.. +..
T Consensus 257 ~~~hl~~~~~kL~e~G~~~~~~~~--~i~v~~~~~~~k-~v~i~T~p~PGFpTDmQ--aqf~~L~~~a~G~s~I~EtifE 331 (421)
T COG0766 257 RPEHLEAVLAKLREAGVDIEEGED--GIRVDMEGKRLK-AVDIKTLPYPGFPTDMQ--AQFMALLTVAEGTSVITETIFE 331 (421)
T ss_pred CHHHHHHHHHHHHHhCCeEEEcCC--eEEEeccCCCCC-cceeccCCCCCCchhHH--HHHHHHHhhcCCceEEEEeech
Confidence 356789999999999999999886 67777643 355 5554 3788995 488999999999887764 455
Q ss_pred CCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 353 SSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 353 ~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|+ .++++|.|||++++.+++..+|+|.. .|+|.+|-..|. |..++|.+++|.|+|+|.|++..
T Consensus 332 nRf----~hv~EL~RmGA~i~~~g~~a~i~G~~-------~L~ga~V~atDL-RAsaaLVlAgLvAeG~T~I~~v~ 395 (421)
T COG0766 332 NRF----MHVPELIRMGANIKLEGNTAVIQGVE-------QLSGAPVMATDL-RASAALVLAGLVAEGETIVNRVY 395 (421)
T ss_pred hhh----hhHHHHHhCCCceEEECCEEEEECCc-------cccCCeeecchh-hhHHHHHHHHHhhCCeEEEeeEE
Confidence 555 58999999999999999999999984 799999998887 99999999999999999998864
No 31
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.94 E-value=2.9e-25 Score=243.87 Aligned_cols=303 Identities=17% Similarity=0.220 Sum_probs=211.9
Q ss_pred EEEccCChhHHHHHHHHHH-hcCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEcCC-ceeEEEEeCCCCcCCccCCCC
Q 014155 91 TVTLPGSKSLSNRILLLAA-LSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFA-MKRAIVEGCGGLFPLAKQQTG 166 (429)
Q Consensus 91 ~i~vpgsKs~s~R~L~~aa-L~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~~-~~~l~i~g~gg~~~~~~~~~~ 166 (429)
.+.+ +..+++.|++++.+ ...+++.+.|. +..||+..++++|+++|++|+++++ ..|++|+|.. .+.
T Consensus 388 ~i~~-~~s~ts~~ll~a~la~~~~~v~i~G~~~l~~rp~~~l~~~L~~~Ga~i~~~~~g~~pi~i~g~~-~l~------- 458 (735)
T PRK14806 388 PLYM-GNSGTSMRLLSGLLAAQSFDSVLTGDASLSKRPMERVAKPLREMGAVIETGEEGRPPLSIRGGQ-RLK------- 458 (735)
T ss_pred eeec-cCchHHHHHHHHHHhcCCCeEEEECChhhhhCChHHHHHHHHHCCCEEEcCCCCcCCEEEECCC-Ccc-------
Confidence 4555 44557778766433 34557899984 4589999999999999999986433 3578888631 111
Q ss_pred ceEEEecCchhhhHHHHHHHH-HcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCee
Q 014155 167 EIELFLGNAGTAMRPLTAAVT-AAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGK 245 (429)
Q Consensus 167 ~~~i~~g~sgts~r~L~a~l~-a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~ 245 (429)
...+.+.. .+.++..++++ +...++++++.+... .|++ ..++|++||++|+..++ .+.|.|++.+.+.+
T Consensus 459 g~~~~l~~--~ssq~~s~ll~aA~~~~g~~~i~~~~~--~~~~--t~~~L~~~G~~i~~~~~----~i~I~g~~~~~~~~ 528 (735)
T PRK14806 459 GIHYDLPM--ASAQVKSCLLLAGLYAEGETSVTEPAP--TRDH--TERMLRGFGYPVKVEGN----TISVEGGGKLTATD 528 (735)
T ss_pred ceEEeccC--chHHHHHHHHHHHhccCCceEEecCcC--CHHH--HHHHHHHCCCEEEecCC----EEEECCCccccCCe
Confidence 12333321 13333322211 111245566665422 3333 57999999999986432 48888876788889
Q ss_pred EEeCCCCCHHHHHHHHHhcc-cCCC-ceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccc-------eEEEeCCccc
Q 014155 246 VKLSGKLSSQYLTALLMAAP-LALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD-------RFFIQGGQKY 316 (429)
Q Consensus 246 ~~i~gd~Ssq~~salllAA~-~~~g-~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~-------~i~I~g~~~l 316 (429)
|.+++|+|+ ++++++++ +..| +++|++.+. .+....+++.|++||++|+..++.. .+.|.+. ++
T Consensus 529 ~~i~~D~~~---a~~~~~~a~~~~g~~v~i~~~~~---~~~~~~~~~~L~~mGa~i~~~~~~~~~g~~~~~i~v~~~-~l 601 (735)
T PRK14806 529 IEVPADISS---AAFFLVAASIAEGSELTLEHVGI---NPTRTGVIDILKLMGADITLENEREVGGEPVADIRVRGA-RL 601 (735)
T ss_pred EEeCCCHHH---HHHHHHHHHhCCCCEEEEccCCC---CcchHHHHHHHHHcCCEEEEcCcccccCCcceeEEEecC-Cc
Confidence 999999988 55555544 4444 588876531 2233668999999999999876410 3667654 45
Q ss_pred cCCccee--ecCCh-hhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCC
Q 014155 317 KSPGNAF--VEGDA-SSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYG 390 (429)
Q Consensus 317 ~~~~~~~--v~~D~-s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~ 390 (429)
+ +.++. ..||. ...++++++|++++|+++|+|+.+.+.+ +| ..+.++|++||++++.++|+++|.|.
T Consensus 602 ~-~~~i~~~~~p~~~D~~p~la~~a~~a~G~s~i~~~~~lr~~EsdR~~~~~~~L~~lG~~i~~~~~~l~i~g~------ 674 (735)
T PRK14806 602 K-GIDIPEDQVPLAIDEFPVLFVAAACAEGRTVLTGAEELRVKESDRIQVMADGLKTLGIDCEPTPDGIIIEGG------ 674 (735)
T ss_pred c-cEEechHhCcchhhHHHHHHHHHHhCCCcEEEEChHHhccchhHHHHHHHHHHHHcCCEEEEeCCeEEEECC------
Confidence 5 54432 12322 2356788888999999999999888766 66 45789999999999999999999986
Q ss_pred CCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 391 RKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 391 ~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
.+++.++++++|||++|+++++++.++|+++|+|+.
T Consensus 675 --~~~~~~v~~~~DhR~~ma~~~~~l~~~~~~~I~~~~ 710 (735)
T PRK14806 675 --IFGGGEVESHGDHRIAMSFSVASLRASGPITIHDCA 710 (735)
T ss_pred --CCCCceeeCCCCHHHHHHHHHHHhcCCCCEEEcccc
Confidence 367788999999999999999999999999999974
No 32
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=99.86 E-value=5.1e-21 Score=190.65 Aligned_cols=310 Identities=21% Similarity=0.252 Sum_probs=220.4
Q ss_pred CChhHHHHHHH-HHHhc----CCc-EEEecCC--CchhHHHHHHHHHHcCCEEEEcC--CceeEEEEeCCCCcCCccCCC
Q 014155 96 GSKSLSNRILL-LAALS----EGT-TVVDNLL--SSEDIHHMLDALKKLGLNVEEDF--AMKRAIVEGCGGLFPLAKQQT 165 (429)
Q Consensus 96 gsKs~s~R~L~-~aaL~----~g~-~~i~g~l--~~~dv~~ll~aL~~lGa~v~~~~--~~~~l~i~g~gg~~~~~~~~~ 165 (429)
|.-....|+|. ++++- .+. .+|+|.. +.||+..+++.|+++|++|++.. +..|+.+...++ ++...++
T Consensus 188 gnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rPi~~LV~~l~q~GadI~~~~~t~~~p~dv~~~~~-~~gg~v~- 265 (595)
T KOG0692|consen 188 GNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERPIGDLVVGLKQLGADIECTLGTNCPPVDVNANGG-LPGGKVK- 265 (595)
T ss_pred CccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCCchHHHHHHHhcCCceEEeccCCCCceeeeccCC-CcCceee-
Confidence 55667889987 44442 223 5788854 58999999999999999999854 346777764332 2222111
Q ss_pred CceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCe
Q 014155 166 GEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (429)
Q Consensus 166 ~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~ 244 (429)
.+-...++.++++++ .+..+ .++.++.+-++..+ +.||+++ +++|..||++|+..... ...+.|.|+....|.
T Consensus 266 -l~g~Vssqy~~~~lm--~ap~a-~g~vt~~~vdgk~i-S~pyv~mt~~lme~fgvn~~~s~~~-~~~y~i~g~~y~~p~ 339 (595)
T KOG0692|consen 266 -LSGSVSSQYLTALLM--CAPLA-LGDVTIEIVDGKLI-SVPYVEMTLKLMERFGVNVEHSTSW-DRFYVIGGQKYKSPG 339 (595)
T ss_pred -eeeeehhhHHHHHHH--hhhhc-CCceEEEeecCccc-cccchhHHHHHHHHhCcCeEecCCC-cceEeccCcccCCCC
Confidence 112333444444322 22232 46777777666444 8899999 99999999999875422 123556555445678
Q ss_pred eEEeCCCCCHHHHHHHHHhcccCCC-ceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc-------c
Q 014155 245 KVKLSGKLSSQYLTALLMAAPLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK-------Y 316 (429)
Q Consensus 245 ~~~i~gd~Ssq~~salllAA~~~~g-~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~-------l 316 (429)
++.|++|.|| +.+++|.+...| +.++++.+. .|.|.+..+.++|+.||+++++..+ ++++.|... +
T Consensus 340 ~~~ve~dAss---a~yfla~aa~tg~~~tV~~~g~-~Slqgda~Fa~vl~pmgc~v~qt~~--svtv~gp~~ga~~~~~l 413 (595)
T KOG0692|consen 340 NAYVEGDASS---ASYFLAGAAITGETVTVEGCGT-TSLQGDAKFAEVLEPMGCKVSQTEN--SVTVTGPPRGAFGMRHL 413 (595)
T ss_pred Cceeeccccc---ccccceeeeEecceeeeccccc-eecccccchHhhhccccceeeeecc--cccccCCCCCcccceeh
Confidence 9999999998 888888655544 677877764 6788888899999999999998875 788877532 1
Q ss_pred cCCcc-eeecCChhhHHHHHHHHHcc-----CCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCC
Q 014155 317 KSPGN-AFVEGDASSASYFVAGAAVT-----GGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRD 387 (429)
Q Consensus 317 ~~~~~-~~v~~D~s~a~~~lalAa~~-----~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~ 387 (429)
+ ..| ....+|. +.+..+.|+++ +++++|+++...+.+ +. .++..+|+|+|+.+++.+|++.|.+++.
T Consensus 414 r-~iD~m~~m~d~--~~t~svvA~~~~~~s~gdptti~~~as~rvket~r~ia~~~el~klg~~~~E~~dg~~v~~~~~- 489 (595)
T KOG0692|consen 414 R-AIDVMNKMPDV--AMTLSVVALFAGLRSSGDPTTIRDVASWRVKETERMIAICTELRKLGATVEEGSDGYCVITPPE- 489 (595)
T ss_pred h-hhcccccccch--hHhHhHHHHhhcccCCCCCcccccccchhHHHHHHHHHHHHHHHHhcccccccCceEEEeCCch-
Confidence 1 222 2334455 45566667776 788999999876655 44 6789999999999999999999998752
Q ss_pred CCCCCCccceEEe---CCCCChHHHHHHHHHHcCCCcEEEecc
Q 014155 388 PYGRKHLRAVDVN---MNKMPDVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 388 ~~~~~~L~g~~v~---~~~~pr~am~lav~al~A~G~s~I~~a 427 (429)
+.|+-.+.+ +++|||++|.+.|+|..++-+..|.+.
T Consensus 490 ----k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~ 528 (595)
T KOG0692|consen 490 ----KKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDP 528 (595)
T ss_pred ----HhccchhhccccccccccchhhhhHHHhccCCCccccCC
Confidence 357777777 999999999999999999887777664
No 33
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.45 E-value=2e-12 Score=121.24 Aligned_cols=155 Identities=16% Similarity=0.125 Sum_probs=114.0
Q ss_pred CCCCCHHHHHHHHHh-cccCCCceEEEEccccCCc-----hHHHHHHHHHHHc-CCeEEEcC-ccceEEEeCCccccCCc
Q 014155 249 SGKLSSQYLTALLMA-APLALGNVEIEIIDKLISV-----PYVEMTLKLMERF-GVFVEHSD-SWDRFFIQGGQKYKSPG 320 (429)
Q Consensus 249 ~gd~Ssq~~salllA-A~~~~g~~~I~~~~~~~s~-----~~~~~tl~~L~~~-G~~i~~~~-~~~~i~I~g~~~l~~~~ 320 (429)
++|+|+ ++++++ +++.+++++|+++.. .+. +++..++++|++| |++++... +...+++.++ .++ +.
T Consensus 7 ~~d~s~---a~~~lala~l~g~~i~I~~i~~-~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~-~l~-g~ 80 (211)
T cd01553 7 KGGGQI---LRSFLVLAAISGGPITVTGIRP-DRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPG-TVR-GG 80 (211)
T ss_pred CCChHH---HHHHHHHHHHcCCCEEEEEecc-CCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCC-Ccc-ce
Confidence 478887 555444 556667899998653 333 6788899999999 99998751 0136777754 455 55
Q ss_pred ceeec-------CChhhHHHHHHHHHccCCEEEEEccCCCCc----c-ch--HHHHHHHHHcCCEEEEeCC---------
Q 014155 321 NAFVE-------GDASSASYFVAGAAVTGGTVTVEGCGTSSL----Q-GD--VKFAEVLEKMGAKVTWTEN--------- 377 (429)
Q Consensus 321 ~~~v~-------~D~s~a~~~lalAa~~~g~v~i~g~~~~~~----q-~D--~~~~~~L~kMGa~v~~~~~--------- 377 (429)
+++.. +|. ..++++++++++|+++|++....+. + .| .+++.+|+|||++++...+
T Consensus 81 ~i~~~~~s~g~~~d~--~~~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~~~~~~~~~g~ 158 (211)
T cd01553 81 DVRFAIGSAGSCTDV--LQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETLLRHGFYPAGG 158 (211)
T ss_pred EEEeccCCcccHHHH--HHHHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeeeeeeeeccCCC
Confidence 55433 344 5578889999999999999987666 5 44 6789999999999998888
Q ss_pred ---eEEEeCCCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 378 ---SVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 378 ---~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+++|.|. ..+++.++ |++|++++++ ++++|+|+.
T Consensus 159 g~~~~~i~g~-------~~l~~~~~------R~~m~~~~~~----~~~~i~~~~ 195 (211)
T cd01553 159 GVVATEVSPV-------EKLNTAQL------RQLVLPMLLA----SGAVEFTVA 195 (211)
T ss_pred CccEEEEcCC-------cccccccH------HHHHHHHHHC----CCeEecCCC
Confidence 6777764 24666654 9999999987 778898875
No 34
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=99.12 E-value=3.5e-10 Score=106.10 Aligned_cols=97 Identities=29% Similarity=0.407 Sum_probs=84.5
Q ss_pred ecCChhhHHHHHHHHHccCCEEEEEccCCCCc-----cchHHHHHHHHHc-CCEEEEe---CCeEEEeCCCCCCCCCCCc
Q 014155 324 VEGDASSASYFVAGAAVTGGTVTVEGCGTSSL-----QGDVKFAEVLEKM-GAKVTWT---ENSVTVTGPPRDPYGRKHL 394 (429)
Q Consensus 324 v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~-----q~D~~~~~~L~kM-Ga~v~~~---~~~i~I~g~~~~~~~~~~L 394 (429)
-++|++.+.|++++|++++++++|+|+..++. |.|..+++.|++| |+++++. ++.+++.+. .+
T Consensus 6 ~~~d~s~a~~~lala~l~g~~i~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~--------~l 77 (211)
T cd01553 6 GKGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPG--------TV 77 (211)
T ss_pred cCCChHHHHHHHHHHHHcCCCEEEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCC--------Cc
Confidence 36899999999999999999999999998887 6789999999999 9999986 667777643 47
Q ss_pred cceEEeCCC-----CChHHHHHHHHHHcCCCcEEEeccc
Q 014155 395 RAVDVNMNK-----MPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 395 ~g~~v~~~~-----~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|++++... .+|+++++++++++++|+++|++..
T Consensus 78 ~g~~i~~~~~s~g~~~d~~~~l~~la~~a~g~s~i~~~g 116 (211)
T cd01553 78 RGGDVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTG 116 (211)
T ss_pred cceEEEeccCCcccHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 888777664 6789999999999999999999864
No 35
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=96.55 E-value=0.24 Score=47.05 Aligned_cols=186 Identities=19% Similarity=0.210 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCcEEEecCCCchh-------HHHHHHHHHHc-CCEEEE-cCCceeEEEEeCCCCcCCccCCCCceEEEe
Q 014155 102 NRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEE-DFAMKRAIVEGCGGLFPLAKQQTGEIELFL 172 (429)
Q Consensus 102 ~R~L~~aaL~~g~~~i~g~l~~~d-------v~~ll~aL~~l-Ga~v~~-~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~ 172 (429)
.-.|.+|+++..+++|+|.=..|+ =...++++.++ +++++. +.+...++..+. .+... ...+++
T Consensus 14 R~~laLS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg--~i~~g-----~~~~d~ 86 (228)
T PF01137_consen 14 RTALALSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPG--EIRGG-----DYTFDC 86 (228)
T ss_dssp HHHHHHHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE----EE-EC-----EEEEEE
T ss_pred HHHHHHHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECC--CccCC-----cEEEec
Confidence 335678999999999999644433 23456666665 556653 333345665542 12111 356788
Q ss_pred cCchhhhHHHHHHHHH---cCCCeEEEEcCCCCCC-CCChHHH----HHHHHHcCCEEEEeC-CCCcCc-------EEEe
Q 014155 173 GNAGTAMRPLTAAVTA---AGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDCIL-GTNCPP-------VRIN 236 (429)
Q Consensus 173 g~sgts~r~L~a~l~a---~~~~~~~~l~g~~~l~-~rpi~~l----~~~L~~~Ga~V~~~~-~~~~~p-------v~I~ 236 (429)
+.+|....+|-+++.. +..+.++++.|+-.-. +.+++.+ +-.|++||++.+.+- ..|+.| +.++
T Consensus 87 ~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l~i~krG~~P~GgGeV~~~v~ 166 (228)
T PF01137_consen 87 GTAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVELKIIKRGFYPKGGGEVQLRVP 166 (228)
T ss_dssp ETTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEEEEEE--BTTTB-EEEEEEEE
T ss_pred CCCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEEEEEEeccCCCCCeEEEEEEE
Confidence 8887766655543322 2456678888874433 3344444 458899999876421 123433 3333
Q ss_pred cCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCc-eEEEEccccCCchHHHHHHHHHHHc-CCeEEE
Q 014155 237 GKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERF-GVFVEH 301 (429)
Q Consensus 237 g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~-~~I~~~~~~~s~~~~~~tl~~L~~~-G~~i~~ 301 (429)
..+.+++-+ +-+....---+++-++++.|+ .+|..- ...+|....+.++++| |+++++
T Consensus 167 p~~~l~~i~----g~vD~~~qdqll~~mALa~g~vS~i~~g---~lt~h~~t~l~vi~~fl~v~f~v 226 (228)
T PF01137_consen 167 PVKPLKPID----GCVDEHLQDQLLLFMALAKGDVSRIRVG---PLTLHTVTNLRVIEQFLGVKFKV 226 (228)
T ss_dssp -SSS---EE----CSS-HHHHHHHHHHHHCCTSSEEEEEES---CSSHHHHHHHHHHHHHCS-EEEE
T ss_pred ccccccccc----hhhhhhhHHHHHHHHHhCCCCceEEEec---CCCHHHHHHHHHHHHHcCcEEEE
Confidence 222222211 333332222344445566775 477753 2467888888888865 455543
No 36
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=96.33 E-value=0.23 Score=49.33 Aligned_cols=115 Identities=16% Similarity=0.246 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCcEEEecCCCc-------hhHHHHHHHHHHc-CCEEEEcC-CceeEEEEeCCCCcCCccCCCCceEEEec
Q 014155 103 RILLLAALSEGTTVVDNLLSS-------EDIHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELFLG 173 (429)
Q Consensus 103 R~L~~aaL~~g~~~i~g~l~~-------~dv~~ll~aL~~l-Ga~v~~~~-~~~~l~i~g~gg~~~~~~~~~~~~~i~~g 173 (429)
-.|.+++++..+++|.|.-.. +--...+++++.+ +++++..+ +...+...+.. +... +..+++|
T Consensus 19 tal~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~--i~gG-----~~~~dig 91 (341)
T COG0430 19 TALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGK--IRGG-----DYRVDIG 91 (341)
T ss_pred HHHHHHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEeccc--eeCc-----eEEEEec
Confidence 356689999999999995442 2233344455443 77776433 22345544321 1111 2356666
Q ss_pred Cchh---hhHHHHHHHHHcCCCeEEEEcCCCCC-CCCChHHH----HHHHHHcCCEEEE
Q 014155 174 NAGT---AMRPLTAAVTAAGGNLSYILDGVPRM-RERPIGDL----VTGLKQLGADVDC 224 (429)
Q Consensus 174 ~sgt---s~r~L~a~l~a~~~~~~~~l~g~~~l-~~rpi~~l----~~~L~~~Ga~V~~ 224 (429)
.+|. .++.|+.++..+.++.+++++|+-.- .+.|++.+ +..|+++|++.+.
T Consensus 92 TAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l 150 (341)
T COG0430 92 TAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECEL 150 (341)
T ss_pred CCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEE
Confidence 5554 46677777766678889999987443 35566554 6689999998764
No 37
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=94.63 E-value=2.8 Score=42.03 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCchh-------HHHHHHHHHHc-CCEEEEcC-CceeEEEEeCCCCcCCccCCCCceEE
Q 014155 100 LSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIEL 170 (429)
Q Consensus 100 ~s~R~L~~aaL~~g~~~i~g~l~~~d-------v~~ll~aL~~l-Ga~v~~~~-~~~~l~i~g~gg~~~~~~~~~~~~~i 170 (429)
+-.-.|.+++++..+++|+|.=..|+ =...++++.++ +++++..+ +...+++.+.. +... ...+
T Consensus 12 ilR~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~--i~gG-----~~~~ 84 (326)
T cd00874 12 ILRTALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGK--IKGG-----DYEF 84 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCC--ccCC-----cEEE
Confidence 44446678999999999998543322 23445555553 55554322 23456665432 1111 3467
Q ss_pred EecCchhhhH---HHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHHcCCEEEE
Q 014155 171 FLGNAGTAMR---PLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (429)
Q Consensus 171 ~~g~sgts~r---~L~a~l~a~~~~~~~~l~g~~~l~-~rpi~~l----~~~L~~~Ga~V~~ 224 (429)
+++.+|.... .+++++..+..+.++++.|+-.-. +.+++.+ +-.|++||++++.
T Consensus 85 d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 85 DIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred eCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 7787776544 455544444567788898874432 4455444 4477999998764
No 38
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=93.97 E-value=4 Score=40.94 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCchh-------HHHHHHHHHHc-CCEEEEcC-CceeEEEEeCCCCcCCccCCCCceEE
Q 014155 100 LSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIEL 170 (429)
Q Consensus 100 ~s~R~L~~aaL~~g~~~i~g~l~~~d-------v~~ll~aL~~l-Ga~v~~~~-~~~~l~i~g~gg~~~~~~~~~~~~~i 170 (429)
+-.-.|.+++++..+++|+|.=..|+ =...++++.++ +++++..+ +...++..+.. +... +..+
T Consensus 14 ilR~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~--i~gG-----~~~~ 86 (326)
T TIGR03399 14 ILRTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGK--IRGG-----DYRF 86 (326)
T ss_pred HHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCC--ccCC-----eEEE
Confidence 44456778999999999999654333 12344444443 55654322 23456665432 1111 3467
Q ss_pred EecCchhhh---HHHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHHcCCEEEE
Q 014155 171 FLGNAGTAM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (429)
Q Consensus 171 ~~g~sgts~---r~L~a~l~a~~~~~~~~l~g~~~l~-~rpi~~l----~~~L~~~Ga~V~~ 224 (429)
++|.+|... +.++++++.+..+.++++.|+-.-. +.+++.+ +-.|++||++++.
T Consensus 87 d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 87 DIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred eCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 777776654 3455555545667888898874432 4455544 4478999998764
No 39
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=93.07 E-value=4.6 Score=41.03 Aligned_cols=114 Identities=17% Similarity=0.146 Sum_probs=68.3
Q ss_pred HHHHHHhcCCcEEEecCCCch-------hHHHHHHHHHHc-CCEEEEc-CCceeEEEEeCCCCcCCccCCCCceEEEecC
Q 014155 104 ILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174 (429)
Q Consensus 104 ~L~~aaL~~g~~~i~g~l~~~-------dv~~ll~aL~~l-Ga~v~~~-~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~ 174 (429)
.|.+++++..+++|+|.=..| -=...++++.++ ++++... .+...++..+.. +... +..+++|.
T Consensus 12 alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~--i~gG-----~~~~d~gt 84 (360)
T TIGR03400 12 RLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGL--ITGG-----SVTHECPT 84 (360)
T ss_pred HHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCc--ccCC-----eEEEeCCC
Confidence 566899999999999954332 223445555555 6666532 233456655431 1111 34677887
Q ss_pred chhhhH---HHHHHHHHcCCCeEEEEcCCCCC-CCCChHHH----HHHHHHcCC---EEEE
Q 014155 175 AGTAMR---PLTAAVTAAGGNLSYILDGVPRM-RERPIGDL----VTGLKQLGA---DVDC 224 (429)
Q Consensus 175 sgts~r---~L~a~l~a~~~~~~~~l~g~~~l-~~rpi~~l----~~~L~~~Ga---~V~~ 224 (429)
+|.... .++++++.+..+.++++.|+-.- .+.|++.+ +-.|++||+ +++.
T Consensus 85 agSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 85 TRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred CcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 776543 45554444456678889887443 24555554 447899999 6654
No 40
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=92.84 E-value=6.6 Score=37.29 Aligned_cols=157 Identities=21% Similarity=0.177 Sum_probs=77.1
Q ss_pred HHHHHH-cCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCC--CCHH-HHHHHHHhcccCCCceEEE--EccccC---Cc
Q 014155 212 VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKLSGK--LSSQ-YLTALLMAAPLALGNVEIE--IIDKLI---SV 282 (429)
Q Consensus 212 ~~~L~~-~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd--~Ssq-~~salllAA~~~~g~~~I~--~~~~~~---s~ 282 (429)
++.+.+ .+++++..+..+ ..+...++ .+.+++++.+-. -|-. |+-+++..++++.+.++|. +..+.. +.
T Consensus 49 l~ll~~it~g~~~g~~~~s-t~l~f~Pg-~i~~g~~~~d~~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psv 126 (228)
T PF01137_consen 49 LRLLAKITNGSVIGISLGS-TELTFRPG-EIRGGDYTFDCGTAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSV 126 (228)
T ss_dssp HHHHHHHCCSEEEEESTTS-SEEEEE---EE-ECEEEEEEETTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--H
T ss_pred HHHHHHhcCCeecceecCC-cEEEEECC-CccCCcEEEecCCCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCH
Confidence 666655 356665433222 23555554 577777766532 2222 3345555667777765554 433221 22
Q ss_pred hHH-HHHHHHHHHcCCeEEEcCcc----------ceEEEeCCccccCCcceeecCChhhHHHHHHHHHccCCE-EEEEcc
Q 014155 283 PYV-EMTLKLMERFGVFVEHSDSW----------DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGC 350 (429)
Q Consensus 283 ~~~-~~tl~~L~~~G~~i~~~~~~----------~~i~I~g~~~l~~~~~~~v~~D~s~a~~~lalAa~~~g~-v~i~g~ 350 (429)
.|+ ..++.+|++||++.+.+-.. -.+.+.+.+.++ + +.-+-|...+..++...|+++|+ .+++-
T Consensus 127 d~~~~v~lP~l~~~G~~~~l~i~krG~~P~GgGeV~~~v~p~~~l~-~--i~g~vD~~~qdqll~~mALa~g~vS~i~~- 202 (228)
T PF01137_consen 127 DYIRQVFLPLLRKFGIPVELKIIKRGFYPKGGGEVQLRVPPVKPLK-P--IDGCVDEHLQDQLLLFMALAKGDVSRIRV- 202 (228)
T ss_dssp HHHHHTCHHHHHHCT-ECEEEEEE--BTTTB-EEEEEEEE-SSS------EECSS-HHHHHHHHHHHHCCTSSEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEeccCCCCCeEEEEEEEcccccc-c--cchhhhhhhHHHHHHHHHhCCCCceEEEe-
Confidence 333 33788999999987642100 123333332222 2 22344666666778888888884 34442
Q ss_pred CCCCccchHHHHHHHHHc-CCEEEEe
Q 014155 351 GTSSLQGDVKFAEVLEKM-GAKVTWT 375 (429)
Q Consensus 351 ~~~~~q~D~~~~~~L~kM-Ga~v~~~ 375 (429)
....... ...+..+++| |++++.+
T Consensus 203 g~lt~h~-~t~l~vi~~fl~v~f~v~ 227 (228)
T PF01137_consen 203 GPLTLHT-VTNLRVIEQFLGVKFKVE 227 (228)
T ss_dssp SCSSHHH-HHHHHHHHHHCS-EEEE-
T ss_pred cCCCHHH-HHHHHHHHHHcCcEEEEe
Confidence 2211111 4567777776 7777664
No 41
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=92.69 E-value=6.5 Score=39.67 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCchhH----HHH---HHHHHHc-CCEEEEcC-CceeEEEEeCCCCcCCccCCCCceEE
Q 014155 100 LSNRILLLAALSEGTTVVDNLLSSEDI----HHM---LDALKKL-GLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIEL 170 (429)
Q Consensus 100 ~s~R~L~~aaL~~g~~~i~g~l~~~dv----~~l---l~aL~~l-Ga~v~~~~-~~~~l~i~g~gg~~~~~~~~~~~~~i 170 (429)
+-.-.|.+++++..+++|+|.=..|+- .++ ++++.++ +++++..+ +...++..+.. +... ...+
T Consensus 16 ilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg~--i~~g-----~~~~ 88 (343)
T PRK04204 16 ILRTALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPGP--IRGG-----DYRF 88 (343)
T ss_pred HHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECCC--ccCC-----eEEE
Confidence 444466789999999999985433221 333 3444443 55665332 22456665431 1111 3467
Q ss_pred EecCchhhh---HHHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHHcCCEEEE
Q 014155 171 FLGNAGTAM---RPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (429)
Q Consensus 171 ~~g~sgts~---r~L~a~l~a~~~~~~~~l~g~~~l~-~rpi~~l----~~~L~~~Ga~V~~ 224 (429)
+++.+|... +.++++++.+..+.++++.|+-.-. +.+++.+ +-.|++||++++.
T Consensus 89 d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l 150 (343)
T PRK04204 89 DIGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEI 150 (343)
T ss_pred ecCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 777766554 3455555444567788898874432 4555544 4578999998765
No 42
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=92.20 E-value=5 Score=40.49 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHHhcCCcEEEecCCCchh-------HHHHHHHHHHc-CCEEEE-cCCceeEEEEeCCCCcCCccCCCCc
Q 014155 97 SKSLSNRILLLAALSEGTTVVDNLLSSED-------IHHMLDALKKL-GLNVEE-DFAMKRAIVEGCGGLFPLAKQQTGE 167 (429)
Q Consensus 97 sKs~s~R~L~~aaL~~g~~~i~g~l~~~d-------v~~ll~aL~~l-Ga~v~~-~~~~~~l~i~g~gg~~~~~~~~~~~ 167 (429)
...+....|.+++++..+++|+|.-..|+ =...++++.++ +++++. +.+...++..+.. +... .
T Consensus 9 GgQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~--i~gG-----~ 81 (341)
T cd00875 9 GSNFFRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGL--ITGG-----V 81 (341)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCC--ccCC-----c
Confidence 33455567789999999999999543322 12455555554 566543 2233456665431 1111 3
Q ss_pred eEEEecCchhhhHH---HHHHHHHcCCCeEEEEcCCCCC-CCCChHHH----HHHHHHcCCE
Q 014155 168 IELFLGNAGTAMRP---LTAAVTAAGGNLSYILDGVPRM-RERPIGDL----VTGLKQLGAD 221 (429)
Q Consensus 168 ~~i~~g~sgts~r~---L~a~l~a~~~~~~~~l~g~~~l-~~rpi~~l----~~~L~~~Ga~ 221 (429)
..+++|.+|....+ +++++..+..+.++++.|+-.- .+.+++.+ +-.|++||+.
T Consensus 82 ~~~d~gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 82 LNHDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred EEEeCCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46778877765444 4444443456678888887443 24555554 4468999994
No 43
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=91.78 E-value=3.5 Score=41.09 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHHHHH-cCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCC----CCCHHHHHHHHHhcccCCCceEEEEcc---ccCCc-
Q 014155 212 VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKLSG----KLSSQYLTALLMAAPLALGNVEIEIID---KLISV- 282 (429)
Q Consensus 212 ~~~L~~-~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~g----d~Ssq~~salllAA~~~~g~~~I~~~~---~~~s~- 282 (429)
+++++. .+++++..+- +...+...++ ++++++|+++- .++ -++-++|.+++++.++++|+... ...+.
T Consensus 53 Vra~~~i~~a~v~G~e~-GS~~l~F~Pg-~i~gG~~~~digTAGsi~-LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~ 129 (341)
T COG0430 53 VRAAAEICNAEVEGAEL-GSTELVFRPG-KIRGGDYRVDIGTAGSIT-LVLQTLLPLLLFADGPSRITVTGGTDVPWAPP 129 (341)
T ss_pred HHHHHHhcCCeEeeeec-cceEEEEecc-ceeCceEEEEecCCCcee-eeHHHHHHHhhcCCCCeEEEEECccCCCCCCC
Confidence 445544 4777765432 2223444443 68888887762 222 24558888999999987776542 11222
Q ss_pred -hHH-HHHHHHHHHcCCeEEEc
Q 014155 283 -PYV-EMTLKLMERFGVFVEHS 302 (429)
Q Consensus 283 -~~~-~~tl~~L~~~G~~i~~~ 302 (429)
.|+ ..++.+|++||+..+..
T Consensus 130 vDyir~v~lp~L~k~G~~~~l~ 151 (341)
T COG0430 130 VDYIRRVTLPVLRKMGIECELE 151 (341)
T ss_pred cchhhhhHHHHHHhhccceEEE
Confidence 243 45899999999988753
No 44
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=90.63 E-value=5.5 Score=40.16 Aligned_cols=118 Identities=20% Similarity=0.180 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCch-------hHHHHHHHHHHc-CCEEEEc-CCceeEEEEeCCCCcCCccCCCCceEE
Q 014155 100 LSNRILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEED-FAMKRAIVEGCGGLFPLAKQQTGEIEL 170 (429)
Q Consensus 100 ~s~R~L~~aaL~~g~~~i~g~l~~~-------dv~~ll~aL~~l-Ga~v~~~-~~~~~l~i~g~gg~~~~~~~~~~~~~i 170 (429)
+-.-.|.+++++..+++|+|.=.+| -=...++++.++ +++++.. .+...++..+.. +... +..+
T Consensus 12 ilR~alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg~--i~gG-----~~~~ 84 (338)
T cd00295 12 ILRHALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPGN--IIGG-----DVRF 84 (338)
T ss_pred HHHHHHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCc--ccCC-----eEEE
Confidence 3444567899999999999853322 222445555553 5665432 233456665431 1111 3467
Q ss_pred EecCchhhh---HHHHHHHHHcCCCeEEEEcCCCCC-CCCChHHH----HHHHHHcCCEEEE
Q 014155 171 FLGNAGTAM---RPLTAAVTAAGGNLSYILDGVPRM-RERPIGDL----VTGLKQLGADVDC 224 (429)
Q Consensus 171 ~~g~sgts~---r~L~a~l~a~~~~~~~~l~g~~~l-~~rpi~~l----~~~L~~~Ga~V~~ 224 (429)
++|.+|... +.++++++.+.++.++++.|+-.- .+.+++.+ +-.|++||++++.
T Consensus 85 d~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~~ 146 (338)
T cd00295 85 ACGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDE 146 (338)
T ss_pred eCCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 788777654 445555555566788889887443 25555554 4578999997753
No 45
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=89.08 E-value=14 Score=36.93 Aligned_cols=126 Identities=24% Similarity=0.345 Sum_probs=69.1
Q ss_pred EEEEccCChhHHHHHHHHHHhcCCcEEEecCCC------chhH-HHHHHHHHHc--CCEEEEcCCceeEEEEeC---CCC
Q 014155 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLLS------SEDI-HHMLDALKKL--GLNVEEDFAMKRAIVEGC---GGL 157 (429)
Q Consensus 90 G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~------~~dv-~~ll~aL~~l--Ga~v~~~~~~~~l~i~g~---gg~ 157 (429)
+.+..-|+...-+ .|.++.|+..++++...-. -+|. ...++.|+++ |-.++++.....+..... ||.
T Consensus 5 ~~~~f~g~q~lr~-~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg~i~GG~ 83 (361)
T KOG3980|consen 5 GSYLFGGGQALRL-RLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPGLILGGT 83 (361)
T ss_pred ceEEecchHHHHH-HHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCceeeCCc
Confidence 4455544443333 3456778888888887433 2443 4577888875 777777654333333322 122
Q ss_pred cCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-----HHHHHHcCCEEE
Q 014155 158 FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-----VTGLKQLGADVD 223 (429)
Q Consensus 158 ~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-----~~~L~~~Ga~V~ 223 (429)
.....-..+.+-++ +.+++++...+..+.++++.|.-+-...|-+|+ +-.|++||+.-+
T Consensus 84 ~~~dc~t~~~I~y~-------leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 84 VTHDCPTARSIGYF-------LEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred eEEeccCccceeee-------hhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 22110001122333 336666555455788999988755433333333 558899999754
No 46
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=80.23 E-value=41 Score=34.22 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcccCCCceEEEEccccCCchH----HHHHHHHHHHc-CCeEEEcC-ccceEEEeCCccccCCcceee-cC
Q 014155 254 SQYLTALLMAAPLALGNVEIEIIDKLISVPY----VEMTLKLMERF-GVFVEHSD-SWDRFFIQGGQKYKSPGNAFV-EG 326 (429)
Q Consensus 254 sq~~salllAA~~~~g~~~I~~~~~~~s~~~----~~~tl~~L~~~-G~~i~~~~-~~~~i~I~g~~~l~~~~~~~v-~~ 326 (429)
+|.+=.-+..+++....++|+++-...+.|+ --..++++.++ ++.++... ...+++..++ .+. +++|.+ .+
T Consensus 6 ~QilR~alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg-~i~-gG~~~~d~g 83 (360)
T TIGR03400 6 SRNFRQRLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPG-LIT-GGSVTHECP 83 (360)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECC-ccc-CCeEEEeCC
Confidence 4655444444566777899998643222332 23356666655 66655322 1135776666 344 555543 22
Q ss_pred ChhhHHH----HHHHHHccCC--EEEEEccCCCCcc--ch---HHHHHHHHHcCC---EEEE
Q 014155 327 DASSASY----FVAGAAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGA---KVTW 374 (429)
Q Consensus 327 D~s~a~~----~lalAa~~~g--~v~i~g~~~~~~q--~D---~~~~~~L~kMGa---~v~~ 374 (429)
..-+.++ ++-+++++++ +++++|.-...+- -| ..++..|++||+ +++.
T Consensus 84 tagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l 145 (360)
T TIGR03400 84 TTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLEL 145 (360)
T ss_pred CCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEE
Confidence 2222233 3445666666 6777776543332 33 568889999999 6665
No 47
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=79.84 E-value=44 Score=33.54 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=51.3
Q ss_pred HHHHHH-cCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCC--CCH-HHHHHHHHhcccCCCceEEEEc--cc-cC--Cc
Q 014155 212 VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKLSGK--LSS-QYLTALLMAAPLALGNVEIEII--DK-LI--SV 282 (429)
Q Consensus 212 ~~~L~~-~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd--~Ss-q~~salllAA~~~~g~~~I~~~--~~-~~--s~ 282 (429)
++.+.+ .+++++..+- +...+...++ .+.+++|+++-. -|- -++-++|..++++.++++|+.. .+ .. +.
T Consensus 51 l~l~~~i~~a~~~g~~~-gst~l~F~Pg-~i~gG~~~~d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsv 128 (326)
T TIGR03399 51 VKAAAEICNAEVEGAEL-GSTELEFIPG-KIRGGDYRFDIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPV 128 (326)
T ss_pred HHHHHHHcCCeEeeeec-CceEEEEECC-CccCCeEEEeCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCH
Confidence 555555 3566653321 2224666665 577888887732 122 2445777778888876666542 22 11 23
Q ss_pred hHH-HHHHHHHHHcCCeEEE
Q 014155 283 PYV-EMTLKLMERFGVFVEH 301 (429)
Q Consensus 283 ~~~-~~tl~~L~~~G~~i~~ 301 (429)
.|. ..++.+|++||+.++.
T Consensus 129 Dy~~~v~lP~l~~~G~~~~l 148 (326)
T TIGR03399 129 DYLRNVFLPLLERMGIRAEL 148 (326)
T ss_pred HHHHHHHHHHHHhCCCcEEE
Confidence 344 4488999999998764
No 48
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=75.72 E-value=19 Score=36.32 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=56.7
Q ss_pred HHHHHHHccCCEEEEEccCCCCcc-c--h--HHHHHHHHHc-CCEEEE-e--CCeEEEeCCCCCCCCCCCccce--EEeC
Q 014155 333 YFVAGAAVTGGTVTVEGCGTSSLQ-G--D--VKFAEVLEKM-GAKVTW-T--ENSVTVTGPPRDPYGRKHLRAV--DVNM 401 (429)
Q Consensus 333 ~~lalAa~~~g~v~i~g~~~~~~q-~--D--~~~~~~L~kM-Ga~v~~-~--~~~i~I~g~~~~~~~~~~L~g~--~v~~ 401 (429)
+-++++++++-+++|+|+..++-+ + + ..+++.+.++ +++++- + ...++..+. .++|. ++|+
T Consensus 15 ~alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg--------~i~gG~~~~d~ 86 (338)
T cd00295 15 HALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPG--------NIIGGDVRFAC 86 (338)
T ss_pred HHHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECC--------cccCCeEEEeC
Confidence 568899999999999999877655 2 2 5678888887 666543 2 234555544 34543 3444
Q ss_pred CCC---ChHHHHHHHHHHcCCCcEEEe
Q 014155 402 NKM---PDVAMTLAVVALFADGPTAIR 425 (429)
Q Consensus 402 ~~~---pr~am~lav~al~A~G~s~I~ 425 (429)
..- .=+.-++..+++|++++++|+
T Consensus 87 gtagSi~l~lq~lLp~~~fa~~~~~l~ 113 (338)
T cd00295 87 GSAGGCGLFLEPILIACLFADGPSRLE 113 (338)
T ss_pred CCCcchHHHHHHHHHHHHhCCCCeEEE
Confidence 422 124667778889999988764
No 49
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=73.05 E-value=98 Score=31.25 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcccCCCceEEEEccccCCchHH----HHHHHHHHHc-CCeEEE-cCccceEEEeCCccccCCcceee--c
Q 014155 254 SQYLTALLMAAPLALGNVEIEIIDKLISVPYV----EMTLKLMERF-GVFVEH-SDSWDRFFIQGGQKYKSPGNAFV--E 325 (429)
Q Consensus 254 sq~~salllAA~~~~g~~~I~~~~~~~s~~~~----~~tl~~L~~~-G~~i~~-~~~~~~i~I~g~~~l~~~~~~~v--~ 325 (429)
.|++=..+..+++....++|+++..-...|++ -..++++.++ ++.++. +....++...++. ++ +++|.+ .
T Consensus 10 gQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~-i~-gG~~~~d~g 87 (341)
T cd00875 10 SNFFRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGL-IT-GGVLNHDCP 87 (341)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCC-cc-CCcEEEeCC
Confidence 45554444445667778999876432233433 2456666655 555542 2111367766653 44 455533 3
Q ss_pred CChhhHHH----HHHHHHccCC--EEEEEccCCCCcc--ch---HHHHHHHHHcCCE
Q 014155 326 GDASSASY----FVAGAAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGAK 371 (429)
Q Consensus 326 ~D~s~a~~----~lalAa~~~g--~v~i~g~~~~~~q--~D---~~~~~~L~kMGa~ 371 (429)
...+ .++ ++.++.++++ +++++|.-...+- -| ..++..|++||+.
T Consensus 88 tagS-I~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~ 143 (341)
T cd00875 88 VSRG-IGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIP 143 (341)
T ss_pred CCcc-hHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3322 333 4455666665 5777776543332 34 6688999999994
No 50
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=67.99 E-value=88 Score=31.62 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcccCCCceEEEEccccCCchHH----HHHHHHHHH-cCCeEEEcCc-cceEEEeCCccccCCcceeec--
Q 014155 254 SQYLTALLMAAPLALGNVEIEIIDKLISVPYV----EMTLKLMER-FGVFVEHSDS-WDRFFIQGGQKYKSPGNAFVE-- 325 (429)
Q Consensus 254 sq~~salllAA~~~~g~~~I~~~~~~~s~~~~----~~tl~~L~~-~G~~i~~~~~-~~~i~I~g~~~l~~~~~~~v~-- 325 (429)
.|.+=..+..+++....++|+++-...+.|++ -..++++.+ .+++++.... ...++..++ .+. +++|.+.
T Consensus 14 gQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg-~i~-~g~~~~d~~ 91 (343)
T PRK04204 14 GQILRTALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPG-PIR-GGDYRFDIG 91 (343)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECC-Ccc-CCeEEEecC
Confidence 45554444445666678999877432334432 224455543 3455543321 135666665 344 5565442
Q ss_pred CChhhHHH----HHHHHHccCC--EEEEEccCCCCcc--ch---HHHHHHHHHcCCEEEEe
Q 014155 326 GDASSASY----FVAGAAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGAKVTWT 375 (429)
Q Consensus 326 ~D~s~a~~----~lalAa~~~g--~v~i~g~~~~~~q--~D---~~~~~~L~kMGa~v~~~ 375 (429)
..-+ .++ ++-+++++++ +++++|.-...+- -| ..++..|++||++++.+
T Consensus 92 tags-i~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~ 151 (343)
T PRK04204 92 TAGS-ITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIE 151 (343)
T ss_pred CCcc-hhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 2222 222 4455666665 5777776543322 33 67889999999988764
No 51
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=65.55 E-value=1.5e+02 Score=29.65 Aligned_cols=118 Identities=22% Similarity=0.195 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcccCCCceEEEEccccCCchHH----HHHHHHHHH-cCCeEEEcCc-cceEEEeCCccccCCcceee--c
Q 014155 254 SQYLTALLMAAPLALGNVEIEIIDKLISVPYV----EMTLKLMER-FGVFVEHSDS-WDRFFIQGGQKYKSPGNAFV--E 325 (429)
Q Consensus 254 sq~~salllAA~~~~g~~~I~~~~~~~s~~~~----~~tl~~L~~-~G~~i~~~~~-~~~i~I~g~~~l~~~~~~~v--~ 325 (429)
.|.+=.-+..+++....++|+++....+.|++ -..++++.+ .+..++.... ..+++..++ .+. +++|.+ .
T Consensus 10 gQilR~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg-~i~-gG~~~~d~~ 87 (326)
T cd00874 10 GQILRTALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPG-KIK-GGDYEFDIG 87 (326)
T ss_pred hHHHHHHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECC-Ccc-CCcEEEeCC
Confidence 45554444445666678999877432334432 234555554 3555542211 136777666 344 555543 3
Q ss_pred CChhhHHH----HHHHHHccCC--EEEEEccCCCCcc--ch---HHHHHHHHHcCCEEEE
Q 014155 326 GDASSASY----FVAGAAVTGG--TVTVEGCGTSSLQ--GD---VKFAEVLEKMGAKVTW 374 (429)
Q Consensus 326 ~D~s~a~~----~lalAa~~~g--~v~i~g~~~~~~q--~D---~~~~~~L~kMGa~v~~ 374 (429)
...+ .++ ++-++.++++ +++++|.-...+- -| ..++..|++||++++.
T Consensus 88 tags-i~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l 146 (326)
T cd00874 88 TAGS-ITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAEL 146 (326)
T ss_pred CCcc-hHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 3332 233 4445666766 5677776543322 33 6688899999998775
No 52
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=46.18 E-value=2.5e+02 Score=26.82 Aligned_cols=104 Identities=24% Similarity=0.250 Sum_probs=61.2
Q ss_pred HHHHhcccCCCceEEEEccccC--CchHHHHHHHHHHHcCCeEEEcCcc--------------ceEEEeCCccccCCcce
Q 014155 259 ALLMAAPLALGNVEIEIIDKLI--SVPYVEMTLKLMERFGVFVEHSDSW--------------DRFFIQGGQKYKSPGNA 322 (429)
Q Consensus 259 alllAA~~~~g~~~I~~~~~~~--s~~~~~~tl~~L~~~G~~i~~~~~~--------------~~i~I~g~~~l~~~~~~ 322 (429)
..+....+....+.+++.+... ..+.....++.|+.+|+++..++=. +.++|.+. +. -
T Consensus 110 ~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~--fi----~ 183 (256)
T COG2200 110 RLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRS--FV----R 183 (256)
T ss_pred HHHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCCCCeEEECHH--HH----h
Confidence 3444434444578888765422 2335677999999999999987610 23444321 11 0
Q ss_pred eecCChhh---HHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 323 FVEGDASS---ASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 323 ~v~~D~s~---a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
.+..+... ...+..+|--.+=++..+|+... .-++.|++||++.-.
T Consensus 184 ~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt~------~ql~~L~~~G~~~~Q 232 (256)
T COG2200 184 DLETDARDQAIVRAIVALAHKLGLTVVAEGVETE------EQLDLLRELGCDYLQ 232 (256)
T ss_pred hcccCcchHHHHHHHHHHHHHCCCEEEEeecCCH------HHHHHHHHcCCCeEe
Confidence 12222222 22344445556778999998642 468899999998654
No 53
>PF07833 Cu_amine_oxidN1: Copper amine oxidase N-terminal domain; InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=37.28 E-value=36 Score=26.46 Aligned_cols=78 Identities=18% Similarity=0.107 Sum_probs=34.2
Q ss_pred HHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCC-CCCCCC
Q 014155 129 MLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP-RMRERP 207 (429)
Q Consensus 129 ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~-~l~~rp 207 (429)
+-.+.+.||++++|+++...+.+...+.. ..+..|+.-... .+..+.+...+ .+..+.
T Consensus 9 l~~i~~~lg~~v~~d~~~~~v~i~~~~~~----------i~~~~~~~~~~~-----------ng~~~~l~~~~~~~~g~~ 67 (93)
T PF07833_consen 9 LRFIAEALGAKVSWDNKTKTVTITKGKKS----------IKLKVGSNEATV-----------NGKKITLSAPPVIINGRT 67 (93)
T ss_dssp HHHHHHHHT-EEEEETTTTEEEEEETTEE----------EEE-TT-SEEEE-----------TTEEEE-SS-BEEETTEE
T ss_pred HHHHHHHcCCEEEEEcCCcEEEEEeeece----------eeecCCCceeee-----------eccccccccCCEEeCCEE
Confidence 34566778999999877678888654321 122222100000 11223333221 123456
Q ss_pred hHHHHHHHHHcCCEEEEeCC
Q 014155 208 IGDLVTGLKQLGADVDCILG 227 (429)
Q Consensus 208 i~~l~~~L~~~Ga~V~~~~~ 227 (429)
|.++-.+-+.||++++++.+
T Consensus 68 yvp~~~l~~~~g~~v~~d~~ 87 (93)
T PF07833_consen 68 YVPLRFLSEAFGYKVSWDNE 87 (93)
T ss_dssp EEETTHHHHHHT--------
T ss_pred EEEHHHHHHHhCCccccccc
Confidence 66666667788999988653
No 54
>PHA02627 hypothetical protein; Provisional
Probab=35.90 E-value=26 Score=25.90 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHHHHcCCEEEEcCC
Q 014155 121 LSSEDIHHMLDALKKLGLNVEEDFA 145 (429)
Q Consensus 121 l~~~dv~~ll~aL~~lGa~v~~~~~ 145 (429)
...+++..++++|..||+.|.++++
T Consensus 32 ided~i~ellniltelgcdvdfde~ 56 (73)
T PHA02627 32 IDEDDITELLNILTELGCDVDFDED 56 (73)
T ss_pred eCHHHHHHHHHHHHHhCCCcccccc
Confidence 4578999999999999999988764
No 55
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=34.87 E-value=4.6e+02 Score=26.12 Aligned_cols=137 Identities=22% Similarity=0.278 Sum_probs=77.6
Q ss_pred CCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEec-CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeC
Q 014155 76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN-LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (429)
Q Consensus 76 ~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g-~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~ 154 (429)
-|+++.+.|. ..|.|.+.-+-....|.+ +.++-....-++= +|+..--+.+++-+|+.|++|..-.+.. |.|.
T Consensus 118 YM~KiavGp~--~~G~vdl~~p~~~Nl~~v-A~algk~~~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGD---Va~a 191 (321)
T TIGR00330 118 YMEKLVVGPG--AKGTIDLNLPLADNLRNV-AKALGKPLSDLTVTILAKPRHDAVIAEMQQLGVRVFAIPDGD---VAAS 191 (321)
T ss_pred ceeeeeECcc--cCCeecCCCCHHHHHHHH-HHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEecccc---HHHH
Confidence 4788999884 478888865544555543 3344433333332 4566666789999999999997543210 1110
Q ss_pred CCCcCCccCCCCceEEEecCchhhhHHHHHHHHHc-CCCeEEEEc------CCCCCCCCChHHH-HHHHHHcCCEEE
Q 014155 155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA-GGNLSYILD------GVPRMRERPIGDL-VTGLKQLGADVD 223 (429)
Q Consensus 155 gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~-~~~~~~~l~------g~~~l~~rpi~~l-~~~L~~~Ga~V~ 223 (429)
-....+ .....++.|--|+..-.|.|+.+-. +++..-.+. |+ .-..|.+.+- .+-.+++|++++
T Consensus 192 -i~~~~~---~s~vD~~~GiGGAPEGVlaAaAlkclGG~mqgrL~~~~~~~~~-~~~~~~~~~~e~~r~~~~GiD~~ 263 (321)
T TIGR00330 192 -ILTCMP---DSEVDVLYGIGGAPEGVVSAAAIRALGGDMQGRLLPRHDVKGD-NEENRRIAEQEIARCKAMGVDVN 263 (321)
T ss_pred -HHHhCC---CCCeeEEEEcCCChHHHHHHHHHHhcCceeEEEEccccccccc-cccccCCCHHHHHHHHHcCCChh
Confidence 000011 1146788887787777777654432 333222221 22 2234555554 778888999654
No 56
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=33.72 E-value=30 Score=25.59 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.2
Q ss_pred CCCchhHHHHHHHHHHcCCEEEEcCC
Q 014155 120 LLSSEDIHHMLDALKKLGLNVEEDFA 145 (429)
Q Consensus 120 ~l~~~dv~~ll~aL~~lGa~v~~~~~ 145 (429)
-...+++..++++|..||+.|.++++
T Consensus 31 eided~i~ellniltelgcdvdfde~ 56 (73)
T PF06076_consen 31 EIDEDDIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred eeCHHHHHHHHHHHHHhCCCcccccc
Confidence 34578999999999999999988764
No 57
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=32.40 E-value=62 Score=24.40 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCEEEE-eCCeEEEeCC
Q 014155 359 VKFAEVLEKMGAKVTW-TENSVTVTGP 384 (429)
Q Consensus 359 ~~~~~~L~kMGa~v~~-~~~~i~I~g~ 384 (429)
..+.+.|++||.+++. .++.+.+..+
T Consensus 22 ~~i~~~L~~lg~~~~~~~~~~~~v~vP 48 (70)
T PF03484_consen 22 EEIIKILKRLGFKVEKIDGDTLEVTVP 48 (70)
T ss_dssp HHHHHHHHHTT-EEEE-CTTEEEEEEE
T ss_pred HHHHHHHHHCCCEEEECCCCEEEEEcC
Confidence 5789999999999999 7888888765
No 58
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=30.94 E-value=76 Score=28.79 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=34.2
Q ss_pred CCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccc-cCCchHHHHHHHHHHHcCCeEEEcC
Q 014155 240 GLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDK-LISVPYVEMTLKLMERFGVFVEHSD 303 (429)
Q Consensus 240 ~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~-~~s~~~~~~tl~~L~~~G~~i~~~~ 303 (429)
.++|--|+++-..+. + ..+..|...+.+..+ -.+.-.+..+++.|++.|+++..+.
T Consensus 41 qFpGlv~Rl~ePk~a----~----LIF~SGK~VcTGaKs~ed~~~av~~~~~~L~~~g~~~~~~p 97 (185)
T COG2101 41 QFPGLVYRLEEPKTA----A----LIFRSGKVVCTGAKSVEDVHRAVKKLAKKLKDGGIDIDFEP 97 (185)
T ss_pred HCCeeEEEecCCcce----E----EEEecCcEEEeccCcHHHHHHHHHHHHHHHHhcCcCcCCCC
Confidence 455667777743331 1 223456777765322 1233456788999999999988765
No 59
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=30.54 E-value=2.7e+02 Score=21.92 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=49.1
Q ss_pred eEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceE
Q 014155 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE 272 (429)
Q Consensus 193 ~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~ 272 (429)
.++++....-|..||-..+++..++|..+|....+ + -++++ .| +..++..++..+..++
T Consensus 4 ~~v~I~n~~GLHARPAa~lv~~a~~~~s~v~l~~~----------~-------~~~~a-kS---il~lm~Lg~~~G~~v~ 62 (85)
T PRK10850 4 QEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSN----------G-------KSASA-KS---LFKLQTLGLTQGTVVT 62 (85)
T ss_pred EEEEECCCCcccHHHHHHHHHHHHhCCCEEEEEEC----------C-------eEEch-Hh---HHHHHhcCCCCCCEEE
Confidence 34666665558899999999999999988765211 0 12222 12 3566666665556677
Q ss_pred EEEccccCCchHHHHHHHHHHH
Q 014155 273 IEIIDKLISVPYVEMTLKLMER 294 (429)
Q Consensus 273 I~~~~~~~s~~~~~~tl~~L~~ 294 (429)
|...++ +....++.+.++|+.
T Consensus 63 i~~~G~-De~~A~~~l~~ll~~ 83 (85)
T PRK10850 63 ISAEGE-DEQKAVEHLVKLMAE 83 (85)
T ss_pred EEEeCc-CHHHHHHHHHHHHHh
Confidence 776442 334455666666554
No 60
>PHA02780 hypothetical protein; Provisional
Probab=30.21 E-value=37 Score=25.10 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.7
Q ss_pred CCchhHHHHHHHHHHcCCEEEEcCC
Q 014155 121 LSSEDIHHMLDALKKLGLNVEEDFA 145 (429)
Q Consensus 121 l~~~dv~~ll~aL~~lGa~v~~~~~ 145 (429)
...+++..++++|..||+.|.++++
T Consensus 32 ided~i~ellniltelgcdvdfde~ 56 (73)
T PHA02780 32 IDEDEIMELLNILTELGCDVDFDEN 56 (73)
T ss_pred echHHHHHHHHHHHHhCCCcccccc
Confidence 4578999999999999999988764
No 61
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=29.18 E-value=1e+02 Score=22.89 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCEEEEe--CCeEEEeCC
Q 014155 359 VKFAEVLEKMGAKVTWT--ENSVTVTGP 384 (429)
Q Consensus 359 ~~~~~~L~kMGa~v~~~--~~~i~I~g~ 384 (429)
..+.+.|++||.+++.. ++.+.+..+
T Consensus 22 ~ei~~~L~~lg~~~~~~~~~~~~~v~~P 49 (71)
T smart00874 22 EEIEEILKRLGFEVEVSGDDDTLEVTVP 49 (71)
T ss_pred HHHHHHHHHCCCeEEecCCCCeEEEECC
Confidence 56899999999999875 356777765
No 62
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=28.66 E-value=6.3e+02 Score=25.56 Aligned_cols=118 Identities=20% Similarity=0.172 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcccCCCceEEEEccccCC----chHHHHHHHHHHHc--CCeEEEcCccceEEEeCCccccCCcceee-cC
Q 014155 254 SQYLTALLMAAPLALGNVEIEIIDKLIS----VPYVEMTLKLMERF--GVFVEHSDSWDRFFIQGGQKYKSPGNAFV-EG 326 (429)
Q Consensus 254 sq~~salllAA~~~~g~~~I~~~~~~~s----~~~~~~tl~~L~~~--G~~i~~~~~~~~i~I~g~~~l~~~~~~~v-~~ 326 (429)
.|++--.+..+.+.+..++|+.+..-.. .+|-...+++|++. |-.++.+....++...++ .+. ++.++. .+
T Consensus 12 ~q~lr~~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg-~i~-GG~~~~dc~ 89 (361)
T KOG3980|consen 12 GQALRLRLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPG-LIL-GGTVTHDCP 89 (361)
T ss_pred hHHHHHHHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCc-eee-CCceEEecc
Confidence 4666656666666767788876533223 34456688888864 555555433224444443 233 333322 22
Q ss_pred ChhhHHH----HHHHHHccCC--EEEEEccCCCCc--cch---HHHHHHHHHcCCEEE
Q 014155 327 DASSASY----FVAGAAVTGG--TVTVEGCGTSSL--QGD---VKFAEVLEKMGAKVT 373 (429)
Q Consensus 327 D~s~a~~----~lalAa~~~g--~v~i~g~~~~~~--q~D---~~~~~~L~kMGa~v~ 373 (429)
-.-+..| ++.++.+++. +++++|+-..+. .=| ..++.+|+|+|+.-+
T Consensus 90 t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~ 147 (361)
T KOG3980|consen 90 TARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDE 147 (361)
T ss_pred CccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcc
Confidence 1111222 4566666655 577788765332 223 578899999999765
No 63
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=24.52 E-value=2.1e+02 Score=23.91 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHcCCEEEEeCCC-CcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHH
Q 014155 212 VTGLKQLGADVDCILGT-NCPPVRINGKGGLPGGKVKLSGKLSSQYLTALL 261 (429)
Q Consensus 212 ~~~L~~~Ga~V~~~~~~-~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~sall 261 (429)
+...+.+|++++...+. .+-++.|.+..+-.-..+.|+...|--|++-|+
T Consensus 64 lkLYrsLGI~~e~~~~~~~~~~~lI~~~~~g~v~~l~ld~~~S~~f~snyi 114 (118)
T PF08286_consen 64 LKLYRSLGIELEYDEDNGENNKVLIRNDNKGDVHVLNLDPKLSDYFISNYI 114 (118)
T ss_dssp HHHHHHCCEEEEC-----CCTCCEEECCCCSSEEEEEE-TTTTHHHHHHHH
T ss_pred HHHHHhCcEEEEecccccccceEEEEcCCCCCceEEeeCCCCChhHHHHHH
Confidence 88999999888763321 344688887632223567888888877777765
No 64
>PRK13561 putative diguanylate cyclase; Provisional
Probab=24.45 E-value=5.9e+02 Score=27.65 Aligned_cols=111 Identities=20% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHhcccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCccceEE-EeCCcccc-CCcce---------ee
Q 014155 258 TALLMAAPLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDSWDRFF-IQGGQKYK-SPGNA---------FV 324 (429)
Q Consensus 258 salllAA~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~-I~g~~~l~-~~~~~---------~v 324 (429)
...+-......+.+.|++.+.. ........+++.|+++|+++..++=...+. ..-=..++ -|.++ .+
T Consensus 507 ~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i 586 (651)
T PRK13561 507 LELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGL 586 (651)
T ss_pred HHHHHHcCCChHHEEEEEchhhhhcCHHHHHHHHHHHHHCCCEEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcC
Confidence 3444444445567888876442 222345678999999999999875110000 00000000 01111 23
Q ss_pred cCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 325 EGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 325 ~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
+.|..-.-.+..+|--.+=++..+|+.. ..-++.|++||++.-.
T Consensus 587 ~~~~~~v~~i~~~a~~l~i~viAegVE~------~~~~~~l~~~g~d~~Q 630 (651)
T PRK13561 587 PEDDSMVAAIIMLAQSLNLQVIAEGVET------EAQRDWLLKAGVGIAQ 630 (651)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEecCCC------HHHHHHHHhcCCCEEe
Confidence 4444323334445545566888888753 3568889999998764
No 65
>PRK07394 hypothetical protein; Provisional
Probab=23.69 E-value=2.6e+02 Score=28.15 Aligned_cols=150 Identities=23% Similarity=0.140 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCC
Q 014155 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (429)
Q Consensus 123 ~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~ 202 (429)
.+.+.-+++++++.-.++....+...+.+-|.+++=. ...+++- .+.|++++. ...++...|...
T Consensus 58 ~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~GtggDG~-------~~t~NiS-------t~aA~v~A~-~Gv~V~kHGnr~ 122 (342)
T PRK07394 58 PEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPYDGR-------SRTAPIY-------PLTALILAA-AGQPVVLHGGDR 122 (342)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCCCCC-------CCCcccH-------HHHHHHHHH-CCCeEEEECCCC
Confidence 3567888999998776664321112344555543200 0133331 344555443 356677788766
Q ss_pred CCCCChHHHHHHHHHcCCEEEE-eC--------CCCcCcEEEecCCCCCCeeEEeC------CCCCHHHHHHHHHhcccC
Q 014155 203 MRERPIGDLVTGLKQLGADVDC-IL--------GTNCPPVRINGKGGLPGGKVKLS------GKLSSQYLTALLMAAPLA 267 (429)
Q Consensus 203 l~~rpi~~l~~~L~~~Ga~V~~-~~--------~~~~~pv~I~g~~~l~~~~~~i~------gd~Ssq~~salllAA~~~ 267 (429)
+.++.=...-|+|+++|++++. .. ..|+ ..+..+ .+.|.-..+- |-.+ -|=+..++.
T Consensus 123 ~ssk~GvtsaDvLe~LGv~~~~~~~~~~~~~l~~~g~--~Fl~ap-~~hP~m~~~~~vR~~Lg~RT-----~fN~lgpL~ 194 (342)
T PRK07394 123 MPTKYGVPLVELWQGLGVDLTGLSLEQVQEGFEQTGL--AFIYQP-DHFPLAESLIPYRDEIGKRP-----PLATLELIW 194 (342)
T ss_pred CCCCCCchHHHHHHHCCCCCCCCCHHHHHHHHHHcCc--eeeech-hhCHHHHHHHHHHHHhCCCC-----HHHHHHHhc
Confidence 5554333358999999999864 21 1121 222222 2222100000 1111 111223333
Q ss_pred C----CceEEEEccccCCchHHHHHHHHHHHcCCe
Q 014155 268 L----GNVEIEIIDKLISVPYVEMTLKLMERFGVF 298 (429)
Q Consensus 268 ~----g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~ 298 (429)
. -...|.++ ...+|.+...+.|+.+|.+
T Consensus 195 NP~a~~~~~v~Gv---~~~~~~~~~a~~l~~lg~~ 226 (342)
T PRK07394 195 TPHQGDHHLVSGF---VHPPTEARAWEALELRGET 226 (342)
T ss_pred CCCCCCCceEEEe---eCHHHHHHHHHHHHHcCCC
Confidence 2 12345543 5688999999999999974
No 66
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.21 E-value=1.4e+02 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeC
Q 014155 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL 226 (429)
Q Consensus 192 ~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~ 226 (429)
...++++|+.++..+.+..+++.|++.|.++..+.
T Consensus 72 ~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lET 106 (212)
T COG0602 72 ARGVSLTGGEPLLQPNLLELLELLKRLGFRIALET 106 (212)
T ss_pred cceEEEeCCcCCCcccHHHHHHHHHhCCceEEecC
Confidence 34688999999877789999999999999988743
No 67
>PRK10060 RNase II stability modulator; Provisional
Probab=22.14 E-value=9.4e+02 Score=26.35 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCceEEEEccc--cCCchHHHHHHHHHHHcCCeEEEcCcc--------------ceEEEeCCccccCCcceeecCChhh-
Q 014155 268 LGNVEIEIIDK--LISVPYVEMTLKLMERFGVFVEHSDSW--------------DRFFIQGGQKYKSPGNAFVEGDASS- 330 (429)
Q Consensus 268 ~g~~~I~~~~~--~~s~~~~~~tl~~L~~~G~~i~~~~~~--------------~~i~I~g~~~l~~~~~~~v~~D~s~- 330 (429)
...+.|++.+. ..........++.|+++|+++..++=. +.++|.+. +. -.+..|...
T Consensus 524 ~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~~d~iKiD~s--fv----~~i~~~~~~~ 597 (663)
T PRK10060 524 YCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQS--FV----RDIHKQPVSQ 597 (663)
T ss_pred cceEEEEECCchhhcCHHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHhCCCCEEEECHH--HH----hccccCcchH
Confidence 44577777653 122344567899999999999987510 22333211 10 012222222
Q ss_pred --HHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 331 --ASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 331 --a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
.-.+..+|--.+=++..+|+.. ..-++.|++||++.-.
T Consensus 598 ~~v~~ii~~a~~lg~~viAeGVEt------~~q~~~l~~~G~d~~Q 637 (663)
T PRK10060 598 SLVRAIVAVAQALNLQVIAEGVET------AKEDAFLTKNGVNERQ 637 (663)
T ss_pred HHHHHHHHHHHHCCCcEEEecCCC------HHHHHHHHHcCCCEEe
Confidence 2234445555577888998864 3568899999998765
No 68
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=22.10 E-value=7.8e+02 Score=24.39 Aligned_cols=136 Identities=21% Similarity=0.272 Sum_probs=69.9
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEec-CCCchhHHHHHHHHHHcCCEEEEcCCc-eeEEEEeC
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN-LLSSEDIHHMLDALKKLGLNVEEDFAM-KRAIVEGC 154 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g-~l~~~dv~~ll~aL~~lGa~v~~~~~~-~~l~i~g~ 154 (429)
|+++.+.|. ..|.|.+.-+-..-+|.+. -++-....-+.= +++..--..+++-+|++|++|..-.+. ---.|..+
T Consensus 120 M~Ki~VgP~--a~g~IDl~~p~~~Nl~~vA-kalgk~~~dl~vvildrpRH~~lI~~ir~~GarV~li~DGDVa~~i~t~ 196 (332)
T COG1494 120 MEKIAVGPE--AKGVIDLDAPLADNLRAVA-KALGKSLSDLTVVILDRPRHAELIAEIRAAGARVRLIPDGDVAAAILTC 196 (332)
T ss_pred hhheeeCcc--ccceeecCCCHHHHHHHHH-HHhCCCHHHeEEEEecCchHHHHHHHHHHhCCEEEEecCcchhhhheec
Confidence 678999883 4677777544444444432 233222221221 345555667899999999999754321 11111111
Q ss_pred CCCcCCccCCCCceEEEecCchhhhHHHHHHHHHc-CC--CeEEEEc---CCCCCCCCChHHHHHHHHHcCCEEE
Q 014155 155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA-GG--NLSYILD---GVPRMRERPIGDLVTGLKQLGADVD 223 (429)
Q Consensus 155 gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~-~~--~~~~~l~---g~~~l~~rpi~~l~~~L~~~Ga~V~ 223 (429)
++- ....+..|--|+..-.+.|+..-+ ++ .++.... +......+.-.+-++-++++|+++.
T Consensus 197 ---~~~-----tgvd~l~GiGGAPEGVisAaAir~lGG~mqgrL~~~~~~~~~~~~~~~~~~e~~R~~~mGid~~ 263 (332)
T COG1494 197 ---FPD-----TGVDLLYGIGGAPEGVISAAAIRALGGDMQGRLIPRQVKGDTEENRRIGEEERARCKAMGIDVN 263 (332)
T ss_pred ---cCC-----CCeeEEEEcCCCcHHHHHHHHHHHccchhheeeccccccccchhhccccHHHHHHHHHhCCChh
Confidence 111 145677776676666666654321 22 2233222 1111112222333778899999653
No 69
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=21.78 E-value=3e+02 Score=27.83 Aligned_cols=107 Identities=22% Similarity=0.226 Sum_probs=60.0
Q ss_pred eCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccc-eEEEeCCccccCCcceeecC
Q 014155 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD-RFFIQGGQKYKSPGNAFVEG 326 (429)
Q Consensus 248 i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~-~i~I~g~~~l~~~~~~~v~~ 326 (429)
+.|+.+.--++|+|+|.-. .|+ ...++..+.+.|++....+....... .+.-.|++... .+
T Consensus 30 l~g~~~~~qi~A~L~Alr~-Kge----------t~eEi~G~~~am~~~~~~~~~p~~~~vDi~GTGGDg~~---T~---- 91 (338)
T COG0547 30 LSGEASPAQIGAFLTALRI-KGE----------TPEEIAGFAEAMREHAPKLPVPAADPVDIVGTGGDGAN---TI---- 91 (338)
T ss_pred hcCCCCHHHHHHHHHHHHH-hcC----------CHHHHHHHHHHHHHhcccCCCCCCCCCCeecCCCCCCC---cc----
Confidence 4456665556788876443 332 34567778899998666655443200 12223333211 12
Q ss_pred ChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeC
Q 014155 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376 (429)
Q Consensus 327 D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~ 376 (429)
..|.++ +.++|-.|-++..+|-...+-+ .--.++|+.+|++++.+.
T Consensus 92 NiSt~a--A~v~A~~Gv~VaKHGnrs~sSk--sGsaDvleaLGv~l~~~~ 137 (338)
T COG0547 92 NISTAA--AIVAAAAGVPVAKHGNRSVSSK--SGSADVLEALGVNLELSP 137 (338)
T ss_pred cchHHH--HHHHHhCCCcEEeECCCCCCCC--CcHHHHHHHcCCCCCCCH
Confidence 222222 2233445677888876554444 234999999999998743
No 70
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=20.71 E-value=1.5e+02 Score=25.23 Aligned_cols=63 Identities=16% Similarity=0.336 Sum_probs=36.7
Q ss_pred EEEEccCCCCcc-chHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCC
Q 014155 345 VTVEGCGTSSLQ-GDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD 419 (429)
Q Consensus 345 v~i~g~~~~~~q-~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~ 419 (429)
+.|.|......+ ....+...|+++|.+.. +..++|.=.+ -+...+...+ |+++++++++++.+
T Consensus 12 ~~ivGl~~~av~esr~Rv~~al~~~g~~~p--~~~i~VNlap---------~~l~k~g~~~-DLaIA~ailsa~~~ 75 (121)
T PF13541_consen 12 FNIVGLPDTAVKESRERVRSALKNSGFPFP--NQDITVNLAP---------ADLKKEGPAF-DLAIAIAILSAFGQ 75 (121)
T ss_pred eEEecCchHHHHHHHHHHHHHHHhcCCCCC--cceeeeEEEe---------CCEEEeeeee-hHHHHHHHHHhCCC
Confidence 345555444444 33678888888888665 4556665211 0122333323 89999999987653
No 71
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=20.29 E-value=2.3e+02 Score=28.35 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=50.0
Q ss_pred chhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCC
Q 014155 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (429)
Q Consensus 123 ~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~ 202 (429)
.+.+..+.+++++.+..+.+......+-+.|.|+.- ...+++- .+.++++++ ...++...|...
T Consensus 46 ~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg--------~~t~nis-------t~~a~vlA~-~G~~V~kHG~r~ 109 (330)
T TIGR01245 46 PEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDG--------ANTINIS-------TASAFVAAA-AGVKVAKHGNRS 109 (330)
T ss_pred HHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCC--------CCccccH-------HHHHHHHHh-CCCEEEEeCCCC
Confidence 467888999999988766542111223344554321 0123321 345555443 456777888766
Q ss_pred CCCCChHHHHHHHHHcCCEEEE
Q 014155 203 MRERPIGDLVTGLKQLGADVDC 224 (429)
Q Consensus 203 l~~rpi~~l~~~L~~~Ga~V~~ 224 (429)
+.++-. ..|+|+.+|++++.
T Consensus 110 ~~s~~G--s~d~le~LGi~~~~ 129 (330)
T TIGR01245 110 VSSKSG--SADVLEALGVNLDL 129 (330)
T ss_pred CCCCcc--HHHHHHHcCCCCCC
Confidence 665532 47999999999853
No 72
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.11 E-value=9.1e+02 Score=26.13 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=56.7
Q ss_pred cccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCccceEE----EeCCccccCCcce---------eecCCh
Q 014155 264 APLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDSWDRFF----IQGGQKYKSPGNA---------FVEGDA 328 (429)
Q Consensus 264 A~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~----I~g~~~l~~~~~~---------~v~~D~ 328 (429)
..+..+.+.|++.+.. .........++.|+++|+++..++=...+. +..-..+ +.++ .++.|.
T Consensus 518 ~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l--~~d~iKid~~~~~~~~~~~ 595 (660)
T PRK11829 518 YHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSL--PIHMIKLDKSFVKNLPEDD 595 (660)
T ss_pred cCcChhhEEEEEcCchhhcCHHHHHHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCC--CCcEEEECHHHHhcccCCH
Confidence 3344566888876542 123355678899999999998875100000 0000001 1111 233343
Q ss_pred hhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 329 SSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 329 s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
...-.+..++-..+=++..+|+.. ..-.+.|+++|++.-.
T Consensus 596 ~~~~~i~~~a~~l~~~viaegVEt------~~~~~~l~~~g~d~~Q 635 (660)
T PRK11829 596 AIARIISCVSDVLKVRVMAEGVET------EEQRQWLLEHGIQCGQ 635 (660)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCC------HHHHHHHHHcCCCEEe
Confidence 222223334444566788888753 3568889999998765
No 73
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=20.10 E-value=4.8e+02 Score=26.08 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEec-CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeC
Q 014155 76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDN-LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (429)
Q Consensus 76 ~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g-~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~ 154 (429)
-|+++.+.|. ..|.|.+.-+-..-.+.+ +.++-....-++= +|+..--+.+++-+|++|++|..-.+.. |.|.
T Consensus 118 YM~KiavGp~--~~G~idl~~p~~~Nl~~v-A~algk~v~dltV~vLdRpRH~~lI~eiR~~GarI~Li~DGD---Va~a 191 (321)
T PRK12388 118 YMKKLVVNRL--AAGAIDLSLPLADNLRNV-ARALGKPLDKLRMVTLDKPRLSAAIEEATQLGVKVFALPDGD---VAAS 191 (321)
T ss_pred ceeeeeECcc--cCCeecCCCCHHHHHHHH-HHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEecccc---HHHH
Confidence 4788999883 478888865544444443 3344433333332 4566666789999999999997543210 1010
Q ss_pred CCCcCCccCCCCceEEEecCchhhhHHHHHHHH
Q 014155 155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVT 187 (429)
Q Consensus 155 gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~ 187 (429)
-....+ .....++.|--|+..-.|.|+.+
T Consensus 192 -i~~~~~---~s~vD~~~GiGGAPEGVlaAaAl 220 (321)
T PRK12388 192 -VLTCWQ---DNPYDVMYTIGGAPEGVISACAV 220 (321)
T ss_pred -HHHhCC---CCCeeEEEEcCCChHHHHHHHHH
Confidence 000011 11467888877777766766543
Done!