Query 014155
Match_columns 429
No_of_seqs 181 out of 1421
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nvs_A 3-phosphoshikimate 1-ca 100.0 8.2E-58 2.8E-62 472.1 40.4 338 75-428 23-360 (450)
2 2o0b_A 3-phosphoshikimate 1-ca 100.0 6.4E-56 2.2E-60 457.5 38.8 318 85-427 10-334 (450)
3 3rmt_A 3-phosphoshikimate 1-ca 100.0 1.3E-55 4.4E-60 454.4 33.2 322 77-427 4-339 (455)
4 3slh_A 3-phosphoshikimate 1-ca 100.0 8.5E-54 2.9E-58 440.7 31.6 322 77-427 4-339 (441)
5 1rf6_A 5-enolpyruvylshikimate- 100.0 7.4E-49 2.5E-53 403.1 35.7 319 80-427 3-333 (427)
6 2yvw_A UDP-N-acetylglucosamine 100.0 6.2E-49 2.1E-53 403.4 32.5 320 75-427 8-332 (425)
7 4fqd_A NIKO protein; beta/alph 100.0 1.3E-49 4.5E-54 413.2 23.8 329 75-427 11-363 (479)
8 3r38_A UDP-N-acetylglucosamine 100.0 1.9E-47 6.4E-52 395.0 35.0 319 74-427 22-350 (454)
9 2pqc_A 3-phosphoshikimate 1-ca 100.0 7.9E-47 2.7E-51 390.1 36.1 322 79-427 4-342 (445)
10 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 6.4E-46 2.2E-50 380.5 35.8 320 77-426 1-325 (419)
11 3slh_A 3-phosphoshikimate 1-ca 100.0 3E-35 1E-39 302.6 25.8 301 91-428 91-412 (441)
12 3nvs_A 3-phosphoshikimate 1-ca 100.0 4.3E-35 1.5E-39 302.4 25.5 307 91-428 113-432 (450)
13 3rmt_A 3-phosphoshikimate 1-ca 100.0 7.8E-35 2.7E-39 299.7 23.3 305 90-428 89-414 (455)
14 2o0b_A 3-phosphoshikimate 1-ca 100.0 2.5E-33 8.5E-38 289.0 29.1 317 79-428 75-406 (450)
15 1rf6_A 5-enolpyruvylshikimate- 100.0 8.3E-32 2.9E-36 276.4 28.2 298 96-428 89-408 (427)
16 3r38_A UDP-N-acetylglucosamine 100.0 1.7E-31 6E-36 275.7 24.4 295 93-428 107-417 (454)
17 4fqd_A NIKO protein; beta/alph 100.0 7.4E-31 2.5E-35 272.4 18.3 298 100-428 107-432 (479)
18 2pqc_A 3-phosphoshikimate 1-ca 100.0 2.3E-29 8E-34 259.6 28.8 306 96-428 92-422 (445)
19 1ejd_A MURA, EPT, UDP-N-acetyl 100.0 1.7E-29 5.8E-34 258.7 27.5 272 114-428 108-393 (419)
20 2yvw_A UDP-N-acetylglucosamine 100.0 4.6E-29 1.6E-33 255.8 24.6 286 100-428 101-399 (425)
21 3tut_A RNA 3'-terminal phospha 94.1 1.8 6.1E-05 42.5 16.3 118 100-224 38-172 (358)
22 3pqv_A RCL1 protein; RTC-like, 90.6 2.6 8.9E-05 41.5 12.5 125 92-224 9-151 (365)
23 3tut_A RNA 3'-terminal phospha 84.0 23 0.0008 34.5 14.6 88 212-301 75-172 (358)
24 3pqv_A RCL1 protein; RTC-like, 48.5 20 0.00068 35.1 5.3 85 333-425 19-117 (365)
25 1kkl_H Phosphocarrier protein 48.2 96 0.0033 24.2 8.5 81 192-294 15-95 (100)
26 1y51_A Phosphocarrier protein 41.8 1.1E+02 0.0038 23.0 8.3 80 193-294 4-83 (88)
27 4hjf_A Ggdef family protein; s 39.3 90 0.0031 29.8 8.4 104 259-374 186-308 (340)
28 2r6o_A Putative diguanylate cy 38.3 1.2E+02 0.0041 28.2 8.9 98 264-373 142-258 (294)
29 4hkm_A Anthranilate phosphorib 34.3 73 0.0025 30.7 6.8 109 248-376 32-140 (346)
30 2bas_A YKUI protein; EAL domai 33.3 3.5E+02 0.012 26.4 11.8 100 263-374 135-253 (431)
31 3hv8_A Protein FIMX; EAL phosp 33.2 1.8E+02 0.006 26.2 9.1 103 260-374 128-248 (268)
32 1pch_A Phosphocarrier protein; 33.1 1.6E+02 0.0054 22.3 8.1 81 194-296 4-84 (88)
33 2gjh_A Designed protein; oblig 32.3 42 0.0014 22.8 3.2 24 361-384 23-49 (62)
34 4hkm_A Anthranilate phosphorib 27.4 38 0.0013 32.8 3.4 84 123-224 55-138 (346)
35 3ccd_A Phosphocarrier protein 26.2 1.7E+02 0.0058 21.8 6.3 32 194-225 5-36 (85)
36 3hvb_A Protein FIMX; EAL phosp 24.5 2.4E+02 0.0083 27.3 8.9 98 265-374 302-417 (437)
37 3pjx_A Cyclic dimeric GMP bind 24.2 2.9E+02 0.01 26.7 9.4 98 265-374 304-419 (430)
38 1ka5_A Phosphocarrier protein 23.6 2.3E+02 0.008 21.2 7.9 79 194-294 5-83 (88)
39 2elc_A Trp D, anthranilate pho 23.0 1.1E+02 0.0038 29.2 5.7 84 122-224 48-131 (329)
40 3s83_A Ggdef family protein; s 22.6 2.2E+02 0.0074 25.4 7.5 105 258-374 112-235 (259)
41 3sy8_A ROCR; TIM barrel phosph 22.4 2.3E+02 0.008 27.2 8.1 107 257-374 248-372 (400)
42 4f3h_A Fimxeal, putative uncha 22.1 1.9E+02 0.0066 25.6 7.0 98 264-373 122-238 (250)
43 1sph_A Histidine-containing ph 21.8 2.5E+02 0.0087 20.9 7.7 79 193-293 4-82 (88)
44 1ptf_A Histidine-containing ph 20.1 2.8E+02 0.0095 20.7 7.8 78 194-293 5-82 (88)
45 3ihs_A Phosphocarrier protein 20.1 3.2E+02 0.011 21.4 7.3 33 193-225 28-60 (106)
No 1
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=100.00 E-value=8.2e-58 Score=472.12 Aligned_cols=338 Identities=54% Similarity=0.865 Sum_probs=303.6
Q ss_pred cCCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeC
Q 014155 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (429)
Q Consensus 75 ~~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~ 154 (429)
+.|+.+.|+|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++..+++|+|.
T Consensus 23 ~~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~g~ 102 (450)
T 3nvs_A 23 NAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKLGVNYRLSADKTTCEVEGL 102 (450)
T ss_dssp --CCEEEECCCCCBCEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEECTTSSCEEEECC
T ss_pred CccceEEEcCCCcceEEEEeCCcHHHHHHHHHHHHHcCCCEEEcCCCccHHHHHHHHHHHHcCCeEEEcCCccEEEEeCC
Confidence 34889999999999999999999999999999999999999999999999999999999999999998654226999998
Q ss_pred CCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEE
Q 014155 155 GGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVR 234 (429)
Q Consensus 155 gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~ 234 (429)
++.+..+ . ...+++||||+++|||+|+++. .+++++++|+|+|++||+.+|++.|++||++|+..++++++|++
T Consensus 103 ~~~~~~~-~---~~~l~~g~sgt~~R~l~~~la~--~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~~ 176 (450)
T 3nvs_A 103 GQAFHTT-Q---PLELFLGNAGTAMRPLAAALCL--GQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLR 176 (450)
T ss_dssp SSCCBCS-S---CEEEECTTCHHHHHHHHHHTTS--SBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEE
T ss_pred CCCcCCC-C---CceEEccCccchHHHHHHHHhc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeEE
Confidence 6444332 1 2368899999999999997653 57889999999999999999999999999999985555788999
Q ss_pred EecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCc
Q 014155 235 INGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314 (429)
Q Consensus 235 I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~ 314 (429)
|+|+ +++++++++++++||||++++||||+++.|+++|++.++..++||+++|+++|++||++|+.+++ +.|+|+|.+
T Consensus 177 I~g~-~l~gg~i~i~g~~sSq~~s~lLlAa~la~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g~-~~i~I~g~~ 254 (450)
T 3nvs_A 177 IQGT-GLQAGTVTIDGSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDY-QEFVIPAGQ 254 (450)
T ss_dssp EECC-CCCSEEEEECCSSCTHHHHHHHHHGGGSSSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEETT-TEEEECTTC
T ss_pred EEcC-CcCceEEEeCCCCcHHHHHHHHHHHHHCCCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecCC-cEEEEcCCc
Confidence 9997 69999999999999999999999999999999999876666889999999999999999998764 589999987
Q ss_pred cccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCc
Q 014155 315 KYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHL 394 (429)
Q Consensus 315 ~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L 394 (429)
+|+.+.++.+++|+++|+||+++|++++|+++|+|+..+++|+|..+++.|++||++|+++++++++.+. +|
T Consensus 255 ~l~~~~~~~v~~D~s~As~~l~aaal~~g~v~i~~~~~~~~~~D~~i~~~L~~mGa~i~~~~~~i~v~~~--------~L 326 (450)
T 3nvs_A 255 SYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVIARRG--------EL 326 (450)
T ss_dssp CCBCCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCGGGGHHHHHHHHTCEEEECSSEEEEECC--------CC
T ss_pred cccCCcceEecCCHHHHHHHHHHHHhcCCeEEEccCCcccccchHHHHHHHHHcCCeEEEeCCEEEEecC--------Cc
Confidence 7863358999999999999999999999999999999999999999999999999999999999999864 59
Q ss_pred cceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 395 RAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 395 ~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|++++..++||++|+++++|++|+|+++|+|+.
T Consensus 327 ~g~~i~~~~~PD~~~~l~~~aa~A~G~t~I~~~~ 360 (450)
T 3nvs_A 327 NAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVY 360 (450)
T ss_dssp BCCEEECTTCTTTHHHHHHHGGGSBSCEEEESCG
T ss_pred CcEEeecCCCcCHHHHHHHHHHHCCCCEEEechh
Confidence 9999999999999999999999999999999863
No 2
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=100.00 E-value=6.4e-56 Score=457.53 Aligned_cols=318 Identities=31% Similarity=0.452 Sum_probs=286.4
Q ss_pred CCceeEEEEccCChhHHHHHHHHHHhcC----CcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCC
Q 014155 85 IREISGTVTLPGSKSLSNRILLLAALSE----GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160 (429)
Q Consensus 85 ~~~l~G~i~vpgsKs~s~R~L~~aaL~~----g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~ 160 (429)
.++++|+|.+|||||+++|+|++|+|++ |+++|+|++.++|+..|+++|++||++|++++ .+++|+|.++.+.
T Consensus 10 ~~~l~G~v~vpgsKs~s~R~l~~aaLa~~~~~g~~~i~~~l~~~D~~~~~~~L~~lGa~i~~~~--~~l~I~g~~~~l~- 86 (450)
T 2o0b_A 10 PTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLRVDGVG--SELTVSGRIEPGP- 86 (450)
T ss_dssp SSCCEEEECCCBCHHHHHHHHHHHHHHHHTTCCCEEEETCCCSHHHHHHHHHHHHTTCEEECSS--SCEEEESCCCCCT-
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCCCCCeEEEecCCCchHHHHHHHHHHHcCCEEEEeC--CEEEEECCCCCcC-
Confidence 4678999999999999999999999999 99999999999999999999999999998644 3899998753232
Q ss_pred ccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCC
Q 014155 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGG 240 (429)
Q Consensus 161 ~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~ 240 (429)
...++++++|+++|||++++. ..++.++++|+|+|++||++.++++|++||++|+. + ++|++|+|+++
T Consensus 87 ------~~~i~~g~sgts~R~l~~lla--~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~--~--~~p~~i~g~~~ 154 (450)
T 2o0b_A 87 ------GARVDCGLAGTVLRFVPPLAA--LGSVPVTFDGDQQARGRPIAPLLDALRELGVAVDG--T--GLPFRVRGNGS 154 (450)
T ss_dssp ------TCEEECTTCHHHHHHHHHHHT--TSSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEEC--S--SSSEEEECCSC
T ss_pred ------ceeeeeccchhHHHHHHHHHh--cCCceEEEeCCCcCCCCCHHHHHHHHHHCCCEEEc--C--ceeEEEEecCC
Confidence 146889999999999999875 35778999999999999999999999999999973 2 46899998557
Q ss_pred CCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccc-cCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCC
Q 014155 241 LPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDK-LISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319 (429)
Q Consensus 241 l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~-~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~ 319 (429)
+++.+|++++|+|+||++++||||+++.|+++|++.+. ..++||+++|+++|++||++|+..++ +.|+|+| ++|+ +
T Consensus 155 l~g~~i~i~~d~Ssq~~salllAA~~~~g~~~I~~~~~~~~s~p~i~~t~~~L~~~Ga~I~~~~~-~~i~I~g-~~l~-g 231 (450)
T 2o0b_A 155 LAGGTVAIDASASSQFVSGLLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDSTP-NRWQVRP-GPVA-A 231 (450)
T ss_dssp CCCEEEEECCTTCTHHHHHHHHHGGGSTTCEEEEECSSCCCCHHHHHHHHHHHHHTTCCEECCST-TEEEECC-CCCC-C
T ss_pred CcCcEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCcCCCcHHHHHHHHHHHCCCeEEecCC-cEEEEEC-CCCc-C
Confidence 99999999999999999999999999999999998643 46899999999999999999986542 4799997 5787 8
Q ss_pred cceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEE
Q 014155 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399 (429)
Q Consensus 320 ~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v 399 (429)
.++++|+|+++++||+++|++++|+++|+|+..+++|+|..++++|++||++|++++|+++|.+. .+|+|++|
T Consensus 232 ~~~~v~~D~s~A~~~laaaa~~~g~v~i~~v~~~~~q~~~~i~~~L~~mGa~i~~~~d~i~v~~~-------~~l~g~~i 304 (450)
T 2o0b_A 232 RRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSSLEVRGP-------TGYDGFDV 304 (450)
T ss_dssp CCEECCBCHHHHHHHHHHHHHHTCEEEETTCCSSCSSCHHHHHHHHHHTTCEEEEETTEEEEECC-------SCCCCCEE
T ss_pred ceEEcCCCHHHHHHHHHHHHhcCCeEEECCCCcccccchHHHHHHHHHcCCeEEEcCCEEEEecC-------CCcceeEE
Confidence 89999999999999999999999999999999999998888999999999999999999999875 25899999
Q ss_pred eCCCCChHHHHHHHHHHcCC--CcEEEecc
Q 014155 400 NMNKMPDVAMTLAVVALFAD--GPTAIRDG 427 (429)
Q Consensus 400 ~~~~~pr~am~lav~al~A~--G~s~I~~a 427 (429)
+++++||++|+|++++++|+ |+++|+|+
T Consensus 305 ~~~~~~D~~p~lavla~~a~~~G~s~I~~~ 334 (450)
T 2o0b_A 305 DLRAVGELTPSVAALAALASPGSVSRLSGI 334 (450)
T ss_dssp ECTTCGGGHHHHHHHHHTSSTTCEEEEESC
T ss_pred eCCCCHHHHHHHHHHHHhCCCCCcEEEECC
Confidence 99999999999999999999 99999985
No 3
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=100.00 E-value=1.3e-55 Score=454.41 Aligned_cols=322 Identities=28% Similarity=0.435 Sum_probs=283.5
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCC-
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG- 155 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~g- 155 (429)
|+.+.|+|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|++++ ..++|+|.+
T Consensus 4 ~~~~~i~~~~~l~G~v~vpgsKs~s~Rali~AaLa~g~s~i~n~~~~~Dv~~~~~~L~~lG~~i~~~~--~~~~i~g~~~ 81 (455)
T 3rmt_A 4 ENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQKLGVSIEQAE--ERVTVKGKGW 81 (455)
T ss_dssp CCEEEECCCSCEEEEECCCBCHHHHHHHHHHHHHSBSCEEEESCCCSHHHHHHHHHHHTTTCEEEEET--TEEEEECCCG
T ss_pred CceEEEcCCCcceEEEEecCcHHHHHHHHHHHHhcCCCEEEccCCccHHHHHHHHHHHHcCCeEEecC--CEEEEeCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999865 479999986
Q ss_pred CCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEE
Q 014155 156 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (429)
Q Consensus 156 g~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I 235 (429)
+.+..+ ...+++||||+++|||+++++. ..+.+.++|+|+|++||+..|++.|++||++|+..++.+++|++|
T Consensus 82 ~~~~~~-----~~~i~~g~SGt~mRll~g~la~--~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~~~~~~Pl~i 154 (455)
T 3rmt_A 82 DGLREP-----SDILDVGNSGTTTRLILGILST--LPFHSVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSI 154 (455)
T ss_dssp GGCCCC-----SSCEECTTCHHHHHHHHHHHTT--SSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEHHHHTEEEEEE
T ss_pred CCcCCC-----cceeecccccccHHHHHHHHHc--CCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEecCCCcccEEE
Confidence 234333 2468999999999999998765 357899999999999999999999999999999865435789999
Q ss_pred ecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc
Q 014155 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (429)
Q Consensus 236 ~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (429)
+|+ ++++++|+++ ..|+||++++||||+++.|.++|.. +..+.++ |+++|++||++|+.++ +.|+|+|+++
T Consensus 155 ~g~-~l~g~~i~l~-~~Ssq~~s~lLlAa~~a~G~t~i~e--p~~s~~~---t~~~L~~~Ga~i~~~g--~~i~I~g~~~ 225 (455)
T 3rmt_A 155 RGG-QLKGIDFHSP-VASAQMKSAILLAGLRAEGKTSVTE--PAKTRDH---TERMLEAFGVNIEKDG--LTVSIEGGQM 225 (455)
T ss_dssp ECC-SCBCCEEECS-SCCHHHHHHHHHHHHTSBSCEEEEC--SSCCCCH---HHHHHHHTTCCEEEET--TEEEECSCCC
T ss_pred EeC-CccceEEEEc-cCcHHHHHHHHHHHHhcCCCEEEEC--CcCcHHH---HHHHHHHCCCCEEecC--CEEEEcCCcc
Confidence 996 7999999998 6899999999999999999888752 3344444 8999999999999877 4899999988
Q ss_pred ccCCcceeecCChhhHHHHHHHHHc-cCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCe---------EEEeCCC
Q 014155 316 YKSPGNAFVEGDASSASYFVAGAAV-TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---------VTVTGPP 385 (429)
Q Consensus 316 l~~~~~~~v~~D~s~a~~~lalAa~-~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~---------i~I~g~~ 385 (429)
|+ +.+|.||+|+++|+||+++|++ ++|+++++|+..+..+ ..+++.|++||++|++.+++ ++|.+.
T Consensus 226 l~-~~~~~V~~D~s~Aa~~l~aaai~~gg~v~i~~~~~~~~~--~~il~~L~~mGa~i~~~~~~~~~ge~~~~i~v~~~- 301 (455)
T 3rmt_A 226 LT-GQHVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTR--AGILEVLKQMGATLAMENERVQGGEPVADLTIETS- 301 (455)
T ss_dssp CB-CCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTT--THHHHHHHHTTCEEEEEEEEEETTEEEEEEEEECC-
T ss_pred cc-CCeeECCCCHHHHHHHHHHHHhcCCCEEEECCCCCchhH--HHHHHHHHHcCCEEEEcCCcccCCccceEEEEecC-
Confidence 98 8899999999999999999999 7999999999754544 46999999999999998764 777753
Q ss_pred CCCCCCCCccceEEeCCCCC---hHHHHHHHHHHcCCCcEEEecc
Q 014155 386 RDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 386 ~~~~~~~~L~g~~v~~~~~p---r~am~lav~al~A~G~s~I~~a 427 (429)
+|+|++|++.++| |++|+|+++|++|+|+++|+|+
T Consensus 302 -------~l~~~~i~~~~~P~~~D~~p~lavla~~a~G~s~I~~~ 339 (455)
T 3rmt_A 302 -------VLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDA 339 (455)
T ss_dssp -------CCBCCCEETTHHHHHGGGHHHHHHHHHTSBSCEEEEC-
T ss_pred -------CceeEEEeCccCCchHHHHHHHHHHHHhCCCcEEEEcc
Confidence 5999999999999 8899999999999999999985
No 4
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=100.00 E-value=8.5e-54 Score=440.67 Aligned_cols=322 Identities=30% Similarity=0.482 Sum_probs=280.3
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCC-
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG- 155 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~g- 155 (429)
|+ +.|+|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++...++|+|.+
T Consensus 4 ~~-~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~~~D~~~~~~~L~~lG~~i~~~~~~~~~~i~~~~~ 82 (441)
T 3slh_A 4 MD-YQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQQMGASIQVIEDENILVVEGVGM 82 (441)
T ss_dssp EE-EEECCCSCCEEEEECCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEEGGGTEEEEECCCT
T ss_pred ce-EEEeCCCcceEEEEcCCcHHHHHHHHHHHHHcCCCEEEcCCCCcHHHHHHHHHHHHcCCEEEEecCCCEEEEecccc
Confidence 55 6788889999999999999999999999999999999999999999999999999999999985322489999986
Q ss_pred CCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEE
Q 014155 156 GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (429)
Q Consensus 156 g~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I 235 (429)
+.+..+ ...+++||||+++|||+++++++ .++++++|+|+|++||+++|++.|++||++|..+ ++++|++|
T Consensus 83 ~~~~~~-----~~~i~~g~sgtt~r~l~g~l~~~--~g~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~--~g~~p~~i 153 (441)
T 3slh_A 83 TGLQAP-----PEALDCGNSGTAIRLLSGLLAGQ--PFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDST--GNVPPLKI 153 (441)
T ss_dssp TCCCCC-----SSCEECTTCHHHHHHHHHHHTTS--SSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEE--TTEEEEEE
T ss_pred CCCCCC-----cceeeeccccccHHHHHHHHHhC--CCEEEEeCCcccccCCHHHHHHHHHHcCCEEEec--CCeEEEEE
Confidence 334433 34689999999999999988763 5678899999999999999999999999999433 36889999
Q ss_pred ecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc
Q 014155 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (429)
Q Consensus 236 ~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (429)
+|.+++++.+|+++. .|+||++++||||+++.|+++|.. +.+|+++|+++|++||++|+.+++ .|+|+|+++
T Consensus 154 ~g~~~l~g~~i~l~~-~Ssq~~s~lLlAa~~a~g~t~i~e-----~~~~~~~t~~~L~~~Ga~i~~~~~--~i~I~g~~~ 225 (441)
T 3slh_A 154 YGNPRLTGIHYQLPM-ASAQVKSCLLLAGLYARGKTCITE-----PAPSRDHTERLLKHFHYTLQKDKQ--SICVSGGGK 225 (441)
T ss_dssp ECCTTCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEEC-----SSCCCCHHHHHHHHTTCCCEECSS--CEEEETTCC
T ss_pred EcCCCccceEEEecC-CCHHHHHHHHHHHHhcCCCeEeeC-----CcccHHHHHHHHHHCCCeEEEeCC--EEEEcCCCc
Confidence 997559999999996 899999999999999999888852 456677899999999999998763 899999888
Q ss_pred ccCCcceeecCChhhHHHHHHHHHcc-CCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCe---------EEEeCCC
Q 014155 316 YKSPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---------VTVTGPP 385 (429)
Q Consensus 316 l~~~~~~~v~~D~s~a~~~lalAa~~-~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~---------i~I~g~~ 385 (429)
|+ +.+|.+|+|+++|+||+++++++ +++++++|+.....+ ..+++.|++||++|++++++ +++.+.
T Consensus 226 l~-~~~~~V~~D~ssAa~~l~aaal~~g~~v~l~g~~~~~~~--~~~l~~L~~mGa~i~~~~~~~~~~e~~~~i~v~~~- 301 (441)
T 3slh_A 226 LK-ANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTR--LGVINLLKMMGADIEVTHYTEKNEEPTADITVRHA- 301 (441)
T ss_dssp CB-CCCEECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGG--CHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEECC-
T ss_pred cc-cceEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCccH--HHHHHHHHHcCCEEEEcCCccccCccceEEEEecC-
Confidence 88 78999999999999999999998 789999998544444 35899999999999998764 566643
Q ss_pred CCCCCCCCccceEEeCCCCC---hHHHHHHHHHHcCCCcEEEecc
Q 014155 386 RDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 386 ~~~~~~~~L~g~~v~~~~~p---r~am~lav~al~A~G~s~I~~a 427 (429)
+|+|++|+..++| |++|+|+++|++|+|+++|+|+
T Consensus 302 -------~l~g~~i~~~~~p~~~D~~p~l~~~aa~A~G~t~I~~i 339 (441)
T 3slh_A 302 -------RLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRDA 339 (441)
T ss_dssp -------CCBCCEECGGGHHHHGGGHHHHHHHHHTSBSEEEECSC
T ss_pred -------CCCceEEecccCCCcHHHHHHHHHHHHhCCCeEEEEec
Confidence 6999999987666 8899999999999999999985
No 5
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=7.4e-49 Score=403.12 Aligned_cols=319 Identities=25% Similarity=0.426 Sum_probs=278.3
Q ss_pred EEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCC-CCc
Q 014155 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG-GLF 158 (429)
Q Consensus 80 ~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~g-g~~ 158 (429)
+++.+ ++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+.+++ .++|+|.+ ..+
T Consensus 3 ~~i~~-~~l~G~v~ipgsKs~t~r~Llaa~La~g~t~I~n~~~s~Dv~~~~~~L~~lG~~i~~~~~--~~~I~g~~~~~~ 79 (427)
T 1rf6_A 3 LKTNI-RHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDG--VITVQGVGMAGL 79 (427)
T ss_dssp ECCCC-CCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETT--EEEEECCCSSCC
T ss_pred eEEeC-CCceEEEEcCCcHHHHHHHHHHHHHcCCCEEEccCCCCHHHHHHHHHHHHcCCeEEecCC--EEEEECCCCCCc
Confidence 55666 479999999999999999999999999999999999999999999999999999986543 78999874 223
Q ss_pred CCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecC
Q 014155 159 PLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK 238 (429)
Q Consensus 159 ~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~ 238 (429)
..+ ...++++++|+++||++|+++. .++.++++|+++++.||+..+++.|++||++|++.++++++|++|+++
T Consensus 80 ~~p-----~~~id~~~sgt~~rll~a~la~--~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~~~~~g~~pi~i~~~ 152 (427)
T 1rf6_A 80 KAP-----QNALNMGNSGTSIRLISGVLAG--ADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGT 152 (427)
T ss_dssp CCC-----SSCEECTTCHHHHHHHHHHGGG--CSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEECC
T ss_pred CCC-----cceeeccccchHHHHHHHHHhc--CCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEEEcCCCcceEEEecc
Confidence 333 2468899999999999988743 357899999999999999999999999999999874345678999884
Q ss_pred CCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccC
Q 014155 239 GGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKS 318 (429)
Q Consensus 239 ~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~ 318 (429)
.++++.+++++ ++|+|++++++|||+++.|+++|... ..+.+++. ++|++||++|+..+ +.++|+|+++|+
T Consensus 153 ~~L~g~~i~~~-~~ssq~~s~lllaA~~a~G~t~I~~~--~~~~~~i~---~~L~~~Ga~i~~~~--~~i~I~g~~~l~- 223 (427)
T 1rf6_A 153 KNLRPIHYELP-IASAQVKSALMFAALQAKGESVIIEK--EYTRNHTE---DMLQQFGGHLSVDG--KKITVQGPQKLT- 223 (427)
T ss_dssp TTCCCCEEECS-SCCHHHHHHHHHHHTTSSEEEEEECS--SCCCCHHH---HHHHHTTCCCEEET--TEEEEEECCCCB-
T ss_pred CCCCceEEEeC-CCCHHHHHHHHHHHHhcCCCeEEEec--cCCHHHHH---HHHHHCCCCEEecC--CEEEEcCCcccC-
Confidence 25999999998 89999999999999999999888753 45677755 89999999999877 489999988888
Q ss_pred CcceeecCChhhHHHHHHHHHccCCE-EEEEccCCCCccchHHHHHHHHHcCCEEEEe----C---CeEEEeCCCCCCCC
Q 014155 319 PGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT----E---NSVTVTGPPRDPYG 390 (429)
Q Consensus 319 ~~~~~v~~D~s~a~~~lalAa~~~g~-v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~----~---~~i~I~g~~~~~~~ 390 (429)
+.++.+++|+++|+||+++|++++|+ ++++|+..+..|+| |++.|++||++|++. + +.+++.+.
T Consensus 224 g~~~~v~~D~~~A~~~~~Aa~~~~g~~v~i~~~~~~~~~~~--~~~~L~~mGa~i~~~~~~~~~~~~~i~v~~~------ 295 (427)
T 1rf6_A 224 GQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTG--IIDVIRAMGGKLEITEIDPVAKSATLIVESS------ 295 (427)
T ss_dssp CCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCH--HHHHHHHTTCEEEEEEEETTTTEEEEEEECC------
T ss_pred CCeEEcCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCChhH--HHHHHHHcCCcEEEccccCCCCcceEEEeCC------
Confidence 78899999999999999999999987 99999987777776 999999999999985 4 66888753
Q ss_pred CCCccceEEeCCCCC---hHHHHHHHHHHcCCCcEEEecc
Q 014155 391 RKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 391 ~~~L~g~~v~~~~~p---r~am~lav~al~A~G~s~I~~a 427 (429)
+|+|+++++.++| |++|+|++++++|+|+++|+|+
T Consensus 296 --~l~~~~i~~~~~p~~~D~~p~l~~la~~a~G~s~i~~~ 333 (427)
T 1rf6_A 296 --DLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDA 333 (427)
T ss_dssp --CCBCCEECTTSGGGTGGGHHHHHHHHHTSBEEEEECSC
T ss_pred --CCCcEEeccccCCChHHHHHHHHHHHHhCCCcEEEEcc
Confidence 5899999999999 9999999999999999999985
No 6
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=100.00 E-value=6.2e-49 Score=403.43 Aligned_cols=320 Identities=20% Similarity=0.255 Sum_probs=277.9
Q ss_pred cCCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeC
Q 014155 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (429)
Q Consensus 75 ~~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~ 154 (429)
+.|+.+.++|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|++.|+++|++||++|++++ ..++|+|
T Consensus 8 ~~m~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~~~i~n~~~~~D~~~~~~~l~~lG~~i~~~~--~~~~i~~- 84 (425)
T 2yvw_A 8 TYRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEFLN--NTVFINP- 84 (425)
T ss_dssp -CCCEEEEECCCCCEEEEECCBCHHHHHHHHHHGGGCSSCEEEESCCCSHHHHHHHHHHHHTTCEEEEET--TEEEEEC-
T ss_pred CCcceEEEeCCCcceEEEEccCcHHHHHHHHHHHHhCCCCEEEecCCchHHHHHHHHHHHHCCCEEEEeC--CEEEEEC-
Confidence 3488899998889999999999999999999999999999999999999999999999999999998765 3688998
Q ss_pred CC-CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcE
Q 014155 155 GG-LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPV 233 (429)
Q Consensus 155 gg-~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv 233 (429)
+. .+..| ..+++++++++|||.++++. .+.+.+.++|+|+|++||+..|++.|++||++|++++ +++|+
T Consensus 85 ~~~~~~~p-------~~~~~~~rts~~~l~~l~a~-~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~--g~~~i 154 (425)
T 2yvw_A 85 SINSFITN-------QEIIRRMRASVLSLGPLLGR-FGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVRE--GYVYV 154 (425)
T ss_dssp CCCCCEEC-------HHHHHHCGGGGGGHHHHHHH-HSEEEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEET--TEEEE
T ss_pred CCCCCCCc-------hhhhcccchHHHHHHHHhcc-CCcEEEEECCCcccccCCHHHHHHHHHHCCCEEEecC--CEEEE
Confidence 52 23322 12568999999999988764 2346889999999999999999999999999998743 46666
Q ss_pred EEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCC
Q 014155 234 RINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGG 313 (429)
Q Consensus 234 ~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~ 313 (429)
++ + ++++.+++++. .|+|++++++|+++++.|.++|++ ..+.+|+++|+++|++||++|+.+++ +.+ |+|.
T Consensus 155 ~~--~-~l~g~~i~~~~-~S~~~~s~lllaa~la~g~t~i~~---~~~~~~i~~t~~~L~~~Ga~i~~~~~-~~i-I~g~ 225 (425)
T 2yvw_A 155 NL--K-EKRRVHFKFDL-VTVTGTENALLYLASVPEESILEN---IALEPEVMDLIEVLKKMGAHVKVEGR-SAY-VKGS 225 (425)
T ss_dssp EC--S-SCCCCEEECSS-CCHHHHHHHHHHHTTCSSEEEEES---CCCCHHHHHHHHHHHHTTCEEEEETT-EEE-EECC
T ss_pred Ee--c-CccceEEeccc-ccHHHHHHHHHHHHhcCCCEEEeC---CCCCchHHHHHHHHHHCCCeEEEcCC-EEE-EeCC
Confidence 65 3 58888999986 899999999999999999888874 46899999999999999999997763 468 9987
Q ss_pred ccccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCC
Q 014155 314 QKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKH 393 (429)
Q Consensus 314 ~~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~ 393 (429)
+.|+ +.++++++|+++++||+++|++++|+++++|+...++| .+++.|++||++|++.++.++|.+. +.
T Consensus 226 ~~l~-~~~~~v~~D~s~A~t~l~aaal~~g~v~l~g~~~~~~~---~l~~~L~~mGa~i~~~~~~i~i~~~-------~~ 294 (425)
T 2yvw_A 226 ENLK-GFTHSVIPDRIEAGTFMVGAVLTDGEILLENARINHLR---AVVEKLKLIGGEVVEENGNLRVFRK-------ES 294 (425)
T ss_dssp SSCC-CCEEECCBCHHHHHHHHHHHHHTTCEEEEESCCGGGCH---HHHHHHHHHTEEEEEETTEEEEEEC-------SC
T ss_pred CccC-CccccccCchhHHHHHHHHHHhCCCcEEEeCCCchHHH---HHHHHHHHCCCEEEEcCCEEEEEec-------CC
Confidence 7787 77889999999999999999999999999998766665 6999999999999999999999874 25
Q ss_pred ccceEEeCCCCC----hHHHHHHHHHHcCCCcEEEecc
Q 014155 394 LRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 394 L~g~~v~~~~~p----r~am~lav~al~A~G~s~I~~a 427 (429)
|+|++++..++| |+.|.+++++++++|+++|++.
T Consensus 295 L~g~~i~~~~~p~~p~d~~~~~~~aa~~a~G~t~I~~~ 332 (425)
T 2yvw_A 295 LRACDIETQVYPGFPTDMQAQFMALLSVAKGKSRIKEN 332 (425)
T ss_dssp CBCCCEEBCSTTSBCHHHHHHHHHHHTTSBSEEEEECS
T ss_pred ccceEEeCCCCCCCcccHHHHHHHHHHHCCCeEEEEcC
Confidence 999999988777 9999999999999999999963
No 7
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=100.00 E-value=1.3e-49 Score=413.17 Aligned_cols=329 Identities=17% Similarity=0.229 Sum_probs=271.2
Q ss_pred cCCceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeC
Q 014155 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGC 154 (429)
Q Consensus 75 ~~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~ 154 (429)
.-++.+.|+|.++++|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..|+++|++||++|+++++...++|+|.
T Consensus 11 ~~~~~~~i~~~~~l~G~v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~s~D~~~~~~~l~~lG~~i~~~~~~~~~~i~g~ 90 (479)
T 4fqd_A 11 PGEPLLEIHGGNRLSGAVRTSGFKHSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHYDGADETFTVDAS 90 (479)
T ss_dssp CCCEEEEEECCCCBCSEEECCBCHHHHHHHHHHHTTCSSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTTTEEEEECT
T ss_pred CCCceEEEeCCCcceEEEEcCCcHHHHHHHHHHHHhcCCCEEEccCCCchhHHHHHHHHHHcCCEEEEecCCCEEEEECC
Confidence 34778999999999999999999999999999999999999999999999999999999999999998311248999988
Q ss_pred CCC-cCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCC----CCChHHHHHHHHHcCCEEEEeCCCC
Q 014155 155 GGL-FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR----ERPIGDLVTGLKQLGADVDCILGTN 229 (429)
Q Consensus 155 gg~-~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~----~rpi~~l~~~L~~~Ga~V~~~~~~~ 229 (429)
+.. +..+ .. .++++|+++|||.++++. .+.+.++++|+|+|+ +||+..|++.|++||++|+..+ ++
T Consensus 91 ~~~~~~~~------~~-~~~~~~ts~~~l~~l~a~-~~~~~~~l~G~~~l~~~~~~RPi~~~~~~L~~lGa~i~~~~-~g 161 (479)
T 4fqd_A 91 AWDRAELP------AD-LVGRIHGSLYLLPALVSR-NGVARLSASGGCPIGEGPRGRPDEHLLDVMGRFGVTTRLTA-DG 161 (479)
T ss_dssp TCCCSCCC------HH-HHTTCSGGGGGHHHHHHH-TSEEEECC------------CCCHHHHHHHHTTTCEEEECT-TS
T ss_pred CCCCCCCC------hh-HhcccchhHHHHHHHHhc-CCCeEEEEeCCcccccCCCCCChHHHHHHHHHCCCEEEecc-CC
Confidence 632 2222 12 256889999999887764 345678899999999 9999999999999999999853 36
Q ss_pred cCcEEEecCCCCCCeeEEeCCCCC--HHHHHH---------HHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCe
Q 014155 230 CPPVRINGKGGLPGGKVKLSGKLS--SQYLTA---------LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVF 298 (429)
Q Consensus 230 ~~pv~I~g~~~l~~~~~~i~gd~S--sq~~sa---------lllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~ 298 (429)
++|+++ + ++++++|+++ |.| |||+|+ +||||+++.|.++|++ ..+.+|+.+|+++|++||++
T Consensus 162 ~~p~~~--~-~l~g~~i~l~-~~sSSSQfiS~lq~v~~t~~lLlaa~la~G~t~I~~---~~~~pdi~~Tl~~L~~~Ga~ 234 (479)
T 4fqd_A 162 SVDLTA--Q-RLTPCTIDML-DYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQH---PYLKPDVTDMVTVLRDLGAD 234 (479)
T ss_dssp CEEEEC--S-SCCCCEEEGG-GGCSBTTTTBCTTHHHHHHHHHHHHHTSEEEEEEES---CCCSHHHHHHHHHHHHHTCC
T ss_pred ceEEEE--c-CccccEEEec-cccchHHhhccchhHHHHHHHHHHHHhCCCcEEEec---CCCChHHHHHHHHHHHCCCe
Confidence 777764 3 6999999995 554 488775 8899999999998874 46789999999999999999
Q ss_pred EEEcCccceEEEeCC---ccccCCcceeecCChhhHHHHHHHHHc-cCCEEEEEccCCCCcc-chHHHHHHHHHcCCEEE
Q 014155 299 VEHSDSWDRFFIQGG---QKYKSPGNAFVEGDASSASYFVAGAAV-TGGTVTVEGCGTSSLQ-GDVKFAEVLEKMGAKVT 373 (429)
Q Consensus 299 i~~~~~~~~i~I~g~---~~l~~~~~~~v~~D~s~a~~~lalAa~-~~g~v~i~g~~~~~~q-~D~~~~~~L~kMGa~v~ 373 (429)
|+.+++ ++|+|+|. +.|+ +.++.+++|+++++||++++++ ++|+++|+|+..+++| .+..+++.|++||++|+
T Consensus 235 I~~~~~-~~i~I~g~g~~~~l~-~~~~~V~~D~s~Ag~fl~aaal~~gg~v~l~g~~~~s~~~~~~~i~~~L~~mGa~i~ 312 (479)
T 4fqd_A 235 IEFAGP-ETWVIHGRGPESLHR-PVDVTLIPDLIEVVTWICAGVLLADEPLRITGPGIDRAVHALAPEFDLLDRMGVRVD 312 (479)
T ss_dssp EEEEET-TEEEEEEECGGGCCC-CEEEECCBCHHHHHHHHHHHHHHBSSCEEEECTTHHHHHHHTHHHHHHHHHHTCCEE
T ss_pred EEEcCC-CEEEEeCCCCCCccC-CCceEeCCChHhHHHHHHHHHHcCCCeEEEeCCCCccccCchHHHHHHHHHCCCEEE
Confidence 998764 48999986 6787 7889999999999999999888 8999999998866655 45789999999999999
Q ss_pred EeCCeEEEeCCCCCCCCCCCccceEEeCCC---CChHHHHHHHHHHcCCCcEEEecc
Q 014155 374 WTENSVTVTGPPRDPYGRKHLRAVDVNMNK---MPDVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 374 ~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~---~pr~am~lav~al~A~G~s~I~~a 427 (429)
+.++.++|.+.. ..|+|++++..+ .+|++|+|+++|++|+|+++|++.
T Consensus 313 ~~~~~i~v~~~~------~~L~g~~i~~~~~~~~~D~~p~l~~~a~~A~G~t~I~e~ 363 (479)
T 4fqd_A 313 VGADEVTAHPLT------KPLRPVEFTAMSRGVFSDSQPFLALLGAYAEGPTYIREA 363 (479)
T ss_dssp ECSSEEEECCCS------SCBCCCEEEECTTSBCTTTHHHHHHHHTTBSEEEEEEES
T ss_pred EcCCeEEEEecC------CCCCCeEEecCCCCCCHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999998721 269999999865 469999999999999999999643
No 8
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=100.00 E-value=1.9e-47 Score=395.01 Aligned_cols=319 Identities=24% Similarity=0.335 Sum_probs=272.1
Q ss_pred ccCCceEEEccCCceeEEEEccCChhHHHHHHHHHHhc-CCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEE
Q 014155 74 QSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALS-EGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVE 152 (429)
Q Consensus 74 ~~~~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~-~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~ 152 (429)
...|+.+.|+|.++++|+|.+|||||+++|+|++|+|+ +|+++|+|++.++|+..|+++|++||++|++++ ..++|+
T Consensus 22 ~~~m~~~~i~~~~~l~G~v~vpgsKs~~~~~l~aa~La~~g~s~i~n~~~~~D~~~~~~~l~~lG~~i~~~~--~~~~i~ 99 (454)
T 3r38_A 22 SNAMEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLKYLNADVSFVN--DEVTVD 99 (454)
T ss_dssp CCTTCEEEEECCCCCEEEEECCBCHHHHHHHHHHGGGEEESCEEEESCCCCHHHHHHHHHHHHTTCEEEEET--TEEEEE
T ss_pred ccCcceEEEeCCCCceEEEEcCCCHHHHHHHHHHHHhCCCCeEEECCCCCcHHHHHHHHHHHHCCCEEEEEC--CEEEEE
Confidence 34488999999999999999999999999999999999 999999999999999999999999999999865 479999
Q ss_pred eCCC-CcCCccCCCCceEEEecCchhhhH----HHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCC
Q 014155 153 GCGG-LFPLAKQQTGEIELFLGNAGTAMR----PLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILG 227 (429)
Q Consensus 153 g~gg-~~~~~~~~~~~~~i~~g~sgts~r----~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~ 227 (429)
|.+. .+..| .+.++++| ||.++++ +.+.+.+.++|+++|++||+..+++.|++||++|+..+
T Consensus 100 ~~~~~~~~~~-----------~~~~~~~Ras~l~l~~l~a-~~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~- 166 (454)
T 3r38_A 100 ATGEITSDAP-----------FEYVRKMRASIVVMGPLLA-RTGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIEN- 166 (454)
T ss_dssp CCSCCCCEEC-----------SHHHHHCGGGGGGHHHHHH-HHSEEEEECCCCCSSSSCCSHHHHHHHHHTTCEEEEET-
T ss_pred CCCCCCCcCC-----------hhHhhccchHHHHHHHHHh-CCCCeEEEeCCCcccccCCHHHHHHHHHHCCCEEEecC-
Confidence 8752 12221 12335677 6656544 33456889999999999999999999999999999853
Q ss_pred CCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccce
Q 014155 228 TNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 307 (429)
Q Consensus 228 ~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~ 307 (429)
+++| +++. ++++++|+++. .|+|+++++||||+++.|.++|++ ..++|++.+|+++|++||++|+.+++ ..
T Consensus 167 -g~~~--i~~~-~l~g~~~~l~~-~S~q~~s~lLlAa~la~G~t~I~~---~~~~p~i~~t~~~L~~~Ga~I~~~~~-~~ 237 (454)
T 3r38_A 167 -GYIE--ATAE-KLVGAKVYLDF-PSVGATQNIMMAATLAEGTTVIEN---VAREPEIVDLANFLNQMGARVIGAGT-EV 237 (454)
T ss_dssp -TEEE--EECS-SCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEES---CCCCHHHHHHHHHHHHTTCCEECTTS-SE
T ss_pred -CEEE--EEEc-CccCcEEEecC-CCHHHHHHHHHHHhcCCCcEEEEc---CCCCcHHHHHHHHHHHCCCCEEECCC-eE
Confidence 4544 5554 69999999996 899999999999999999998874 34789999999999999999997653 48
Q ss_pred EEEeCCccccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCC
Q 014155 308 FFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 387 (429)
Q Consensus 308 i~I~g~~~l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~ 387 (429)
|+|+|.++|+ +.++.+++|+++++||+++|++++|+++++|+...+++ .+++.|++||++|++.++.++|.|.
T Consensus 238 i~I~g~~~l~-~~~~~v~~D~s~A~~~l~aaal~gg~v~i~g~~~~~~~---~i~~~L~~mGa~i~~~~~~i~V~g~--- 310 (454)
T 3r38_A 238 IRIEGVKELT-ATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHIS---SLIAKLEEMGVQIIEEENGIRVIGP--- 310 (454)
T ss_dssp EEEECCSCEE-CCEEECCBCHHHHHHHHHHHHHTTCEEEEESCCGGGGH---HHHHHHHHTTCEEEEC--CEEEECC---
T ss_pred EEEecCcccc-ccccccCCChhHHHHHHHHHHHcCCcEEEcCCCchHHH---HHHHHHHHCCCEEEecCCeEEEEEC---
Confidence 9999987787 77899999999999999999999999999998766554 7999999999999999999999975
Q ss_pred CCCCCCccceEEeCCCCC----hHHHHHHHHHHcCCCcEEEecc
Q 014155 388 PYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 388 ~~~~~~L~g~~v~~~~~p----r~am~lav~al~A~G~s~I~~a 427 (429)
++|+|++++..++| |+.|.+++++++|+|+++|++.
T Consensus 311 ----~~L~g~~i~~~~~p~~p~D~~~~l~~laa~A~G~t~i~e~ 350 (454)
T 3r38_A 311 ----DKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTET 350 (454)
T ss_dssp ----SSCCCCCEEBCSTTSBCGGGHHHHHHHHHHSSSEEEEECS
T ss_pred ----CCccceEEecccCCCCcccHHHHHHHHHHhcCCCEEEEcC
Confidence 26999999998888 9999999999999999999863
No 9
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=100.00 E-value=7.9e-47 Score=390.13 Aligned_cols=322 Identities=25% Similarity=0.345 Sum_probs=277.7
Q ss_pred eEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCC-CC
Q 014155 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCG-GL 157 (429)
Q Consensus 79 ~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~g-g~ 157 (429)
.+.|+|.+.+.|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|+.+++ .++|+|.+ ..
T Consensus 4 pl~i~~~~~l~G~v~ipgsKs~t~r~ll~A~La~g~t~i~n~~~~~dv~~~~~~L~~lG~~i~~~~~--~~~I~g~~~~~ 81 (445)
T 2pqc_A 4 PATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGD--TWIIDGVGNGG 81 (445)
T ss_dssp CEEEECCSCCEEEEECCBCHHHHHHHHHHHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEETT--EEEEEEECTTC
T ss_pred eEEEcCCCcceEEEEcCCCHHHHHHHHHHHHhcCCcEEEccCCCCHHHHHHHHHHHHCCCEEEecCC--EEEEEccCCCC
Confidence 3778887789999999999999999999999999999999999999999999999999999987653 78999875 12
Q ss_pred cCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEec
Q 014155 158 FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRING 237 (429)
Q Consensus 158 ~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g 237 (429)
+..+ ...++++++||++|||++++.. .+++++++|+++++.||+..+++.|++||++|++.+ ++++|++|++
T Consensus 82 ~~~p-----~~~~d~~~sgt~~r~l~~~l~~--~~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~~~~-~g~~Pi~i~~ 153 (445)
T 2pqc_A 82 LLAP-----EAPLDFGNAATGCRLTMGLVGV--YDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSED-GDRLPVTLRG 153 (445)
T ss_dssp CCCC-----SSCEECTTCHHHHHHHHHHHHT--SSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEET-TTEEEEEEEC
T ss_pred CCCC-----CcccchhhhhHHHHHHHHHHhc--CCcEEEEECCccCCCCChHHHHHHHHHCCCEEEecc-CCcccEEEeC
Confidence 3333 2457899999999999998853 357899999999999999999999999999999864 3578999998
Q ss_pred CCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEc--Cc-cceEEEeCCc
Q 014155 238 KGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHS--DS-WDRFFIQGGQ 314 (429)
Q Consensus 238 ~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~--~~-~~~i~I~g~~ 314 (429)
+.++++.+++++ +.|||++++++|||+++.|+++|... ..+.++ +.++|++||++|+.+ +. .+.++|+|++
T Consensus 154 ~~~l~g~~i~~~-~~ssq~~~~lllaa~~a~G~t~I~~~--~~~~~~---~~~~L~~~Ga~I~~~~~~~g~~~~~I~g~~ 227 (445)
T 2pqc_A 154 PKTPTPITYRVP-MASAQVKSAVLLAGLNTPGITTVIEP--IMTRDH---TEKMLQGFGANLTVETDADGVRTIRLEGRG 227 (445)
T ss_dssp CSSCCCCEEECS-SSCHHHHHHHHHHHHTSSSEEEEEES--SCCCCH---HHHHHHHTTCCEEEEECTTSCEEEEEETTC
T ss_pred CCCCCCeEEEeC-CCCHHHHHHHHHHHhhCCCceEEEEc--cCCHHH---HHHHHHHCCCEEEEecCCCCccEEEEeCCc
Confidence 535889999998 89999999999999999999988764 345564 459999999999865 31 1479999987
Q ss_pred cccCCcceeecCChhhHHHHHHHHHccCCE-EEEEccCCCCccchHHHHHHHHHcCCEEEEe-----C----CeEEEeCC
Q 014155 315 KYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT-----E----NSVTVTGP 384 (429)
Q Consensus 315 ~l~~~~~~~v~~D~s~a~~~lalAa~~~g~-v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~-----~----~~i~I~g~ 384 (429)
+|+ +.++.+++|++.++||++++++++|. ++++|+..++.++| |++.|++||++|++. + +.++|.+.
T Consensus 228 ~l~-~~~~~v~~D~s~a~~~l~aa~~~~g~~v~i~~~~~~~~~~~--~~~~L~~mGa~i~~~~~~~~~g~~~~~i~v~~~ 304 (445)
T 2pqc_A 228 KLT-GQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTG--LILTLQEMGADIEVINPRLAGGEDVADLRVRSS 304 (445)
T ss_dssp CCB-CCEEECCBCHHHHHHHHHHHHHSTTCEEEEEEEECCGGGCH--HHHHHHHHTCEEEEEEEEEETTEEEEEEEEECC
T ss_pred ccc-CceeEcCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcch--HHHHHHHcCCeEEEccccccCCCccCcEEEeCC
Confidence 887 77899999999999999999999876 99999987677775 999999999999973 2 45778763
Q ss_pred CCCCCCCCCccceEEeCCCCC---hHHHHHHHHHHcCCCcEEEecc
Q 014155 385 PRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRDG 427 (429)
Q Consensus 385 ~~~~~~~~~L~g~~v~~~~~p---r~am~lav~al~A~G~s~I~~a 427 (429)
.|+|+++++.++| |++|+|++++++|+|+++|+|+
T Consensus 305 --------~l~~~~i~~~~~p~~~D~~p~l~~~a~~a~G~s~i~~~ 342 (445)
T 2pqc_A 305 --------TLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGL 342 (445)
T ss_dssp --------CCBCCEECGGGGGGTGGGHHHHHHHHTTSBSEEEECCC
T ss_pred --------CCCceEeccccCCchHHHHHHHHHHHHhCCCcEEEEcc
Confidence 5899999999999 9999999999999999999985
No 10
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=100.00 E-value=6.4e-46 Score=380.55 Aligned_cols=320 Identities=23% Similarity=0.322 Sum_probs=273.7
Q ss_pred CceEEEccCCceeEEEEccCChhHHHHHHHHHHhcCCcEEEecCCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCC
Q 014155 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGG 156 (429)
Q Consensus 77 ~~~~~i~p~~~l~G~i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg 156 (429)
|+.+.|+|.+.+.|+|.+|||||+++|+|++|+|++|+++|+|++.++|+..++++|++||++|+.++ .++|+|.+.
T Consensus 1 m~~~~i~~~~~l~G~v~i~gsks~~~r~Llaa~la~g~t~i~n~~~~~dv~~t~~~L~~lGa~i~~~~---~~~I~~~~~ 77 (419)
T 1ejd_A 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERXG---SVWIDASNV 77 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESS---SEEEECTTC
T ss_pred CCeEEEeCCCCceEEEEecCcHHHHHHHHHHHHHCCCcEEEecCCCcHHHHHHHHHHHHCCCEEEEcc---eEEEecCCC
Confidence 56788888778899999999999999999999999999999999999999999999999999998643 688888642
Q ss_pred -CcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEE
Q 014155 157 -LFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235 (429)
Q Consensus 157 -~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I 235 (429)
.+..+ . . ++++++++++++.+++.. .+...+.++|+++++.||+..+++.|++||++|+.++ +++|+++
T Consensus 78 ~~~~~~-----~-d-~~~~~ras~~l~~alla~-~~~~~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~~~--g~~~v~~ 147 (419)
T 1ejd_A 78 NNFSAP-----Y-D-LVKTMRASIWALGPLVAR-FGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEE--GYVKASV 147 (419)
T ss_dssp CCCEEC-----H-H-HHTTCGGGGGGHHHHHHH-HSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEET--TEEEEEC
T ss_pred CCCcCc-----h-H-HhhhhhHHHHHHHHHhhc-CCceEEEecCCcccCCCchHHHHHHHHHCCCEEEEcC--CEEEEEE
Confidence 12222 1 1 346677788777666542 2446788999999999999999999999999999854 4545544
Q ss_pred ecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCcc
Q 014155 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315 (429)
Q Consensus 236 ~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~ 315 (429)
.+++++.+++++. .|+|++++++++|+++.|.++|++ ..+++|+++|+++|++||++|+.+++ +.++|+|+++
T Consensus 148 --~~~L~g~~i~~~~-~s~~~~~~ll~aa~~a~G~t~I~~---~~~e~~i~~t~~~L~~~Ga~i~~~~~-~~i~I~g~~~ 220 (419)
T 1ejd_A 148 --NGRLKGAHIVMDK-VSVGATVTIMSAATLAEGTTIIEN---AAREPEIVDTANFLVALGAKISGQGT-DRITIEGVER 220 (419)
T ss_dssp --SSSCBCCEEECSS-CCHHHHHHHHHHHTTSBSEEEEET---CCCCHHHHHHHHHHHHTTCEEECTTS-SEEEEECCSC
T ss_pred --cCCccceEEecCC-CCHHHHHHHHHHHhcCCCcEEEEe---CCCCchHHHHHHHHHHCCCEEEEccC-CEEEEeCCCc
Confidence 2258999999986 899999999999999999998874 35789999999999999999997664 5899999888
Q ss_pred ccCCcceeecCChhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCcc
Q 014155 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLR 395 (429)
Q Consensus 316 l~~~~~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~ 395 (429)
|+ +.++.+++|++.|+||++++++++|+++|+|+..++++ .|.+.|++||++|++.+++++|.+.+ .+|+
T Consensus 221 l~-g~~~~v~~D~s~A~~~~~aa~~~~g~v~i~~~~~~~~~---~~~~~L~~mGa~i~~~~~~i~v~~~~------~~l~ 290 (419)
T 1ejd_A 221 LG-GGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLD---AVLAKLREAGADIETGEDWISLDMHG------KRPK 290 (419)
T ss_dssp BC-CEEEECCBCHHHHHHHHHHHHTTTCEEEEESCCGGGCH---HHHHHHHHTTCEEEECSSEEEEECTT------CCCB
T ss_pred cc-ccEEEeeCCHHHHHHHHHHHHhcCCeEEEeCcCcccHH---HHHHHHHHCCCEEEEcCCEEEEEecC------CCcc
Confidence 88 78899999999999999999999999999999877775 79999999999999999999998721 2689
Q ss_pred ceEEeCCCCC----hHHHHHHHHHHcCCCcEEEec
Q 014155 396 AVDVNMNKMP----DVAMTLAVVALFADGPTAIRD 426 (429)
Q Consensus 396 g~~v~~~~~p----r~am~lav~al~A~G~s~I~~ 426 (429)
++++++.++| |++|++++++++|+|+++|++
T Consensus 291 ~~~i~~~~~p~~~~D~~p~la~la~~a~g~s~i~~ 325 (419)
T 1ejd_A 291 AVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITE 325 (419)
T ss_dssp CCCEECCSTTSCCGGGHHHHHHHHHTSBSEEEEEC
T ss_pred ceEEeCCCCCCCcHHHHHHHHHHHHhCCCcEEEEc
Confidence 9999999877 999999999999999999994
No 11
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=100.00 E-value=3e-35 Score=302.62 Aligned_cols=301 Identities=18% Similarity=0.222 Sum_probs=227.5
Q ss_pred EEEccCChhHHHHHHHHHH-hcCCcEEEec--CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCc
Q 014155 91 TVTLPGSKSLSNRILLLAA-LSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGE 167 (429)
Q Consensus 91 ~i~vpgsKs~s~R~L~~aa-L~~g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~ 167 (429)
.+.+ |....+.|+|+..+ ...+.+++.| .+..||+..++++|++||++|..+++..|++|+|.++ +... .
T Consensus 91 ~i~~-g~sgtt~r~l~g~l~~~~g~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g~~p~~i~g~~~-l~g~-----~ 163 (441)
T 3slh_A 91 ALDC-GNSGTAIRLLSGLLAGQPFNTVLTGDSSLQRRPMKRIIDPLTLMGAKIDSTGNVPPLKIYGNPR-LTGI-----H 163 (441)
T ss_dssp CEEC-TTCHHHHHHHHHHHTTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTEEEEEEECCTT-CBCC-----E
T ss_pred eeee-ccccccHHHHHHHHHhCCCEEEEeCCcccccCCHHHHHHHHHHcCCEEEecCCeEEEEEEcCCC-ccce-----E
Confidence 4565 66678899887554 4578899999 5679999999999999999996555668999988632 2111 1
Q ss_pred eEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeE
Q 014155 168 IELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246 (429)
Q Consensus 168 ~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~ 246 (429)
..+...+++.+..+|+|++++ ++.+++.. .+++.++ +++|++||++|+..+ + +++|+|.+++++.+|
T Consensus 164 i~l~~~Ssq~~s~lLlAa~~a---~g~t~i~e-----~~~~~~~t~~~L~~~Ga~i~~~~--~--~i~I~g~~~l~~~~~ 231 (441)
T 3slh_A 164 YQLPMASAQVKSCLLLAGLYA---RGKTCITE-----PAPSRDHTERLLKHFHYTLQKDK--Q--SICVSGGGKLKANDI 231 (441)
T ss_dssp EECSSCCHHHHHHHHHHHTTS---BSEEEEEC-----SSCCCCHHHHHHHHTTCCCEECS--S--CEEEETTCCCBCCCE
T ss_pred EEecCCCHHHHHHHHHHHHhc---CCCeEeeC-----CcccHHHHHHHHHHCCCeEEEeC--C--EEEEcCCCccccceE
Confidence 122222344444455555443 45555543 3444444 899999999999753 2 699999878999999
Q ss_pred EeCCCCCHHHHHHHHHhcccC--CCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCcc-------ceEEEeCCcccc
Q 014155 247 KLSGKLSSQYLTALLMAAPLA--LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW-------DRFFIQGGQKYK 317 (429)
Q Consensus 247 ~i~gd~Ssq~~salllAA~~~--~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~-------~~i~I~g~~~l~ 317 (429)
+|++|+|+ +++|++|++. .++++|++.. ..++...++++|++||++|+.++++ ..++|+++ +++
T Consensus 232 ~V~~D~ss---Aa~~l~aaal~~g~~v~l~g~~---~~~~~~~~l~~L~~mGa~i~~~~~~~~~~e~~~~i~v~~~-~l~ 304 (441)
T 3slh_A 232 SIPGDISS---AAFFIVAATITPGSAIRLCRVG---VNPTRLGVINLLKMMGADIEVTHYTEKNEEPTADITVRHA-RLK 304 (441)
T ss_dssp ECCBCHHH---HHHHHHHHHHSTTCEEEEEEEE---CCGGGCHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEECC-CCB
T ss_pred EeCCCHHH---HHHHHHHHHhcCCCEEEEcCCC---CCccHHHHHHHHHHcCCEEEEcCCccccCccceEEEEecC-CCC
Confidence 99999998 7777766544 4578888763 2344356899999999999987642 14778763 565
Q ss_pred CCcceeecCCh-----hhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCC
Q 014155 318 SPGNAFVEGDA-----SSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPY 389 (429)
Q Consensus 318 ~~~~~~v~~D~-----s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~ 389 (429)
+.++ +.|. ...++++++|++++|+++|+|+.+.+++ +| .+++++|+|||++|++++|+++|+|.
T Consensus 305 -g~~i--~~~~~p~~~D~~p~l~~~aa~A~G~t~I~~i~~lR~kEsdRi~~l~~eL~kmGa~i~~~~d~l~I~G~----- 376 (441)
T 3slh_A 305 -GIDI--PPDQVPLTIDEFPVLLIAAAVAQGKTVLRDAAELRVKETDRIAAMVDGLQKLGIAAESLPDGVIIQGG----- 376 (441)
T ss_dssp -CCEE--CGGGHHHHGGGHHHHHHHHHTSBSEEEECSCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEECC-----
T ss_pred -ceEE--ecccCCCcHHHHHHHHHHHHhCCCeEEEEeccccccccchHHHHHHHHHHHCCCEEEEeCCEEEEECC-----
Confidence 5443 3331 1257899999999999999999988877 67 57899999999999999999999984
Q ss_pred CCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 390 GRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 390 ~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|+|.+|++++|||++|+|+++++.++|+++|+|+.
T Consensus 377 ---~L~g~~v~s~~DhRiamalaia~l~a~g~~~I~~~~ 412 (441)
T 3slh_A 377 ---TLEGGEVNSYDDHRIAMAFAVAGTLAKGPVRIRNCD 412 (441)
T ss_dssp ---CCCCEEEECTTCHHHHHHHHHHHHHCSSCEEEECCG
T ss_pred ---CCCCCEEECCCCHHHHHHHHHHHHhCCCCEEEeccc
Confidence 589999999999999999999999999999999974
No 12
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=100.00 E-value=4.3e-35 Score=302.42 Aligned_cols=307 Identities=22% Similarity=0.245 Sum_probs=231.6
Q ss_pred EEEccCChhHHHHHHHHH-HhcCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEc--CCceeEEEEeCCCCcCCccCCC
Q 014155 91 TVTLPGSKSLSNRILLLA-ALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEED--FAMKRAIVEGCGGLFPLAKQQT 165 (429)
Q Consensus 91 ~i~vpgsKs~s~R~L~~a-aL~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~--~~~~~l~i~g~gg~~~~~~~~~ 165 (429)
++.+ |+.+.+.|+|+.. ++.++.+++.|. +..||+..++++|++||++|++. ++..|++|+|.+ +..
T Consensus 113 ~l~~-g~sgt~~R~l~~~la~~~~~~~l~G~~~l~~RPi~~~l~~L~~lGa~i~~~~~~g~~p~~I~g~~--l~g----- 184 (450)
T 3nvs_A 113 ELFL-GNAGTAMRPLAAALCLGQGDYVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTG--LQA----- 184 (450)
T ss_dssp EEEC-TTCHHHHHHHHHHTTSSBCEEEEECSGGGGGSCCHHHHHHHHHTTCEEEESSSTTSSCEEEECCC--CCS-----
T ss_pred eEEc-cCccchHHHHHHHHhcCCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEEcCCCeEeEEEEcCC--cCc-----
Confidence 3554 7778999976543 345788999985 78999999999999999999983 344689999853 211
Q ss_pred CceEEEec-C-ch-hhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCCC
Q 014155 166 GEIELFLG-N-AG-TAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGL 241 (429)
Q Consensus 166 ~~~~i~~g-~-sg-ts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l 241 (429)
..+.+. + +. ....+|+|++++ ++.++|.+..++.+||+.++ +++|++||++|+..+ ..+++|+|.+.+
T Consensus 185 --g~i~i~g~~sSq~~s~lLlAa~la---~g~t~I~~~~~~~s~p~i~~t~~~L~~~Ga~i~~~g---~~~i~I~g~~~l 256 (450)
T 3nvs_A 185 --GTVTIDGSISSQFLTAFLMSAPLA---QGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD---YQEFVIPAGQSY 256 (450)
T ss_dssp --EEEEECCSSCTHHHHHHHHHGGGS---SSCEEEEESSCCSSHHHHHHHHHHHHHTTCCCEEET---TTEEEECTTCCC
T ss_pred --eEEEeCCCCcHHHHHHHHHHHHHC---CCcEEEEeCCCcCCchHHHHHHHHHHHCCCCEEecC---CcEEEEcCCccc
Confidence 223322 1 11 012334444333 34455554334568888887 999999999998743 236999997667
Q ss_pred CC-eeEEeCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCc
Q 014155 242 PG-GKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPG 320 (429)
Q Consensus 242 ~~-~~~~i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~ 320 (429)
.+ .+|.+++|+|+ .+.|++++++..|+++|++... .+.+.+..++++|++||++|+.+++ .+++.++ +++ +.
T Consensus 257 ~~~~~~~v~~D~s~--As~~l~aaal~~g~v~i~~~~~-~~~~~D~~i~~~L~~mGa~i~~~~~--~i~v~~~-~L~-g~ 329 (450)
T 3nvs_A 257 VSPGQFLVEGDASS--ASYFLAAAAIKGGEVKVTGIGK-NSIQGDIQFADALEKMGAQIEWGDD--YVIARRG-ELN-AV 329 (450)
T ss_dssp BCCSEEECCBCHHH--HHHHHHHHHHHCSEEEEESCCT-TCSCGGGGHHHHHHHHTCEEEECSS--EEEEECC-CCB-CC
T ss_pred cCCcceEecCCHHH--HHHHHHHHHhcCCeEEEccCCc-ccccchHHHHHHHHHcCCeEEEeCC--EEEEecC-CcC-cE
Confidence 65 49999999998 2445555666668899998754 3445566788999999999999875 7888874 576 66
Q ss_pred ceeecCChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccce
Q 014155 321 NAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAV 397 (429)
Q Consensus 321 ~~~v~~D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~ 397 (429)
+++...++..+++++++|++++|+++|+|+...+++ +| .+++++|+|||++|++.+|.++|+|. .+|+|.
T Consensus 330 ~i~~~~~PD~~~~l~~~aa~A~G~t~I~~~~~lR~ke~dRi~~l~~eL~kmGa~I~~~~d~i~I~G~-------~~L~g~ 402 (450)
T 3nvs_A 330 DLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMATELRKVGATVEEGEDFIVITPP-------TKLIHA 402 (450)
T ss_dssp EEECTTCTTTHHHHHHHGGGSBSCEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSEEEEECC-------SSCCCC
T ss_pred EeecCCCcCHHHHHHHHHHHCCCCEEEechhhccCCCchHHHHHHHHHHHcCCEEEEcCCEEEEeCC-------CCCCCC
Confidence 765433333477899999999999999999988877 66 78999999999999999999999987 368999
Q ss_pred EEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 398 DVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 398 ~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|++++|||++|+|+++|+.++ +++|+|+.
T Consensus 403 ~v~~~~DhR~ama~aiaal~a~-~~~I~~~~ 432 (450)
T 3nvs_A 403 AIDTYDDHRMAMCFSLVALSDT-PVTINDPK 432 (450)
T ss_dssp EECCTTCHHHHHHHHGGGGSSS-CEEEESGG
T ss_pred EEecCccHHHHHHHHHHHHhCC-CEEEECcC
Confidence 9999999999999999999885 57799874
No 13
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=100.00 E-value=7.8e-35 Score=299.72 Aligned_cols=305 Identities=15% Similarity=0.199 Sum_probs=225.7
Q ss_pred EEEEccCChhHHHHHHHHH-HhcCCcEEEec--CCCchhHHHHHHHHHHcCCEEEEcC--CceeEEEEeCCCCcCCccCC
Q 014155 90 GTVTLPGSKSLSNRILLLA-ALSEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDF--AMKRAIVEGCGGLFPLAKQQ 164 (429)
Q Consensus 90 G~i~vpgsKs~s~R~L~~a-aL~~g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~--~~~~l~i~g~gg~~~~~~~~ 164 (429)
..|.+ |....+.|+|+.. +...+.+.+.| .+..||+..++++|++||++|+..+ +..|++|+|.+ +...
T Consensus 89 ~~i~~-g~SGt~mRll~g~la~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~~~~~~Pl~i~g~~--l~g~--- 162 (455)
T 3rmt_A 89 DILDV-GNSGTTTRLILGILSTLPFHSVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRGGQ--LKGI--- 162 (455)
T ss_dssp SCEEC-TTCHHHHHHHHHHHTTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEHHHHTEEEEEEECCS--CBCC---
T ss_pred ceeec-ccccccHHHHHHHHHcCCcEEEEeCCcccccCCHHHHHHHHHHCCCEEEEecCCCcccEEEEeCC--ccce---
Confidence 34665 6777899987743 34567889998 4668999999999999999998754 24789999842 2211
Q ss_pred CCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCe
Q 014155 165 TGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (429)
Q Consensus 165 ~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~ 244 (429)
...+...+++.+..+|+|++++ ++.+++.+ +..+||+ ++++|++||++|+... + .++|+|.+++++.
T Consensus 163 --~i~l~~~Ssq~~s~lLlAa~~a---~G~t~i~e--p~~s~~~--t~~~L~~~Ga~i~~~g--~--~i~I~g~~~l~~~ 229 (455)
T 3rmt_A 163 --DFHSPVASAQMKSAILLAGLRA---EGKTSVTE--PAKTRDH--TERMLEAFGVNIEKDG--L--TVSIEGGQMLTGQ 229 (455)
T ss_dssp --EEECSSCCHHHHHHHHHHHHTS---BSCEEEEC--SSCCCCH--HHHHHHHTTCCEEEET--T--EEEECSCCCCBCC
T ss_pred --EEEEccCcHHHHHHHHHHHHhc---CCCEEEEC--CcCcHHH--HHHHHHHCCCCEEecC--C--EEEEcCCccccCC
Confidence 1122222344445566665544 34455554 3446664 7899999999999753 2 4999998889999
Q ss_pred eEEeCCCCCHHHHHHHHHhcccC--CCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCcc-------ceEEEeCCcc
Q 014155 245 KVKLSGKLSSQYLTALLMAAPLA--LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSW-------DRFFIQGGQK 315 (429)
Q Consensus 245 ~~~i~gd~Ssq~~salllAA~~~--~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~-------~~i~I~g~~~ 315 (429)
+|.|++|+|+ ++||++|++. .++++|++... .+ ....++++|++||++|+.++++ ..|+|.++ +
T Consensus 230 ~~~V~~D~s~---Aa~~l~aaai~~gg~v~i~~~~~-~~--~~~~il~~L~~mGa~i~~~~~~~~~ge~~~~i~v~~~-~ 302 (455)
T 3rmt_A 230 HVVVPGDISS---AAFFLVAGAMVPHSRITLTNVGI-NP--TRAGILEVLKQMGATLAMENERVQGGEPVADLTIETS-V 302 (455)
T ss_dssp EEECCBCHHH---HHHHHHHHHHSTTEEEEEEEEEC-CT--TTTHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEECC-C
T ss_pred eeECCCCHHH---HHHHHHHHHhcCCCEEEECCCCC-ch--hHHHHHHHHHHcCCEEEEcCCcccCCccceEEEEecC-C
Confidence 9999999998 7777765544 56899988742 12 2255899999999999987642 12888864 5
Q ss_pred ccCCcceee--cCCh-hhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCC
Q 014155 316 YKSPGNAFV--EGDA-SSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPY 389 (429)
Q Consensus 316 l~~~~~~~v--~~D~-s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~ 389 (429)
++ +.+++. .|++ ..++.++++|++++|+++|+|+.+.+++ +| .+++++|+|||++|+.++|+++|+|..
T Consensus 303 l~-~~~i~~~~~P~~~D~~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~~~~d~l~I~G~~---- 377 (455)
T 3rmt_A 303 LQ-GVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGPT---- 377 (455)
T ss_dssp CB-CCCEETTHHHHHGGGHHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEEEETTEEEECSCC----
T ss_pred ce-eEEEeCccCCchHHHHHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEEEECCEEEEECCC----
Confidence 66 655432 2311 2267899999999999999999888877 67 479999999999999999999999873
Q ss_pred CCCCccceE-EeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 390 GRKHLRAVD-VNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 390 ~~~~L~g~~-v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+|+|.+ |++++|||++|+|+++++.++|+++|+|+.
T Consensus 378 ---~l~g~~~v~s~~DhR~amal~iagL~a~g~~~I~~~~ 414 (455)
T 3rmt_A 378 ---PLKGGVTVSSHGDHRIGMAMAIAALLAEKPVTVEGTE 414 (455)
T ss_dssp ---CCBCSSEEECTTCHHHHHHHHHHHTTCBSCEEEECTH
T ss_pred ---CCCCCceecCCCCHHHHHHHHHHHHhCCCCEEEeCcc
Confidence 688988 999999999999999999999999999874
No 14
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=100.00 E-value=2.5e-33 Score=289.02 Aligned_cols=317 Identities=19% Similarity=0.212 Sum_probs=241.6
Q ss_pred eEEEccCC-ce-eEEEEccCChhHHHHHHH-HHHhcCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEcCCceeEEEEe
Q 014155 79 EIVLQPIR-EI-SGTVTLPGSKSLSNRILL-LAALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEG 153 (429)
Q Consensus 79 ~~~i~p~~-~l-~G~i~vpgsKs~s~R~L~-~aaL~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g 153 (429)
.+.|.+.. .+ ...+.+ |....+.|+|. +.++.++.+++.|- +..||+..++++|++||++|+.+ ..+++|+|
T Consensus 75 ~l~I~g~~~~l~~~~i~~-g~sgts~R~l~~lla~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~--~~p~~i~g 151 (450)
T 2o0b_A 75 ELTVSGRIEPGPGARVDC-GLAGTVLRFVPPLAALGSVPVTFDGDQQARGRPIAPLLDALRELGVAVDGT--GLPFRVRG 151 (450)
T ss_dssp CEEEESCCCCCTTCEEEC-TTCHHHHHHHHHHHTTSSSEEEEECCGGGGGSCCHHHHHHHHHTTCEEECS--SSSEEEEC
T ss_pred EEEEECCCCCcCceeeee-ccchhHHHHHHHHHhcCCceEEEeCCCcCCCCCHHHHHHHHHHCCCEEEcC--ceeEEEEe
Confidence 46676631 22 256777 55558899775 34467788999985 78999999999999999999743 47999997
Q ss_pred CCCCcCCccCCCCceEEEec---CchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCC
Q 014155 154 CGGLFPLAKQQTGEIELFLG---NAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTN 229 (429)
Q Consensus 154 ~gg~~~~~~~~~~~~~i~~g---~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~ 229 (429)
.++ +.. ..+.+. +++....+|+|++++ .++.++.+.|.+ ..++|+.++ +++|++||++|+... .+
T Consensus 152 ~~~-l~g-------~~i~i~~d~Ssq~~salllAA~~~-~g~~~I~~~~~~-~~s~p~i~~t~~~L~~~Ga~I~~~~-~~ 220 (450)
T 2o0b_A 152 NGS-LAG-------GTVAIDASASSQFVSGLLLSAASF-TDGLTVQHTGSS-LPSAPHIAMTAAMLRQAGVDIDDST-PN 220 (450)
T ss_dssp CSC-CCC-------EEEEECCTTCTHHHHHHHHHGGGS-TTCEEEEECSSC-CCCHHHHHHHHHHHHHTTCCEECCS-TT
T ss_pred cCC-CcC-------cEEEcCCCCCHHHHHHHHHHHHHc-CCCeEEEeCCCC-cCCCcHHHHHHHHHHHCCCeEEecC-Cc
Confidence 432 221 233332 233334455555443 345667776642 347888655 999999999998432 12
Q ss_pred cCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHh-cccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceE
Q 014155 230 CPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMA-APLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRF 308 (429)
Q Consensus 230 ~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllA-A~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i 308 (429)
.++|++ +++++.++.|++|+|+ ++++++ |++.+|+++|+++.. .+.+.++.+++.|++||++|+..++ .+
T Consensus 221 --~i~I~g-~~l~g~~~~v~~D~s~---A~~~laaaa~~~g~v~i~~v~~-~~~q~~~~i~~~L~~mGa~i~~~~d--~i 291 (450)
T 2o0b_A 221 --RWQVRP-GPVAARRWDIEPDLTN---AVAFLSAAVVSGGTVRITGWPR-VSVQPADHILAILRQLNAVVIHADS--SL 291 (450)
T ss_dssp --EEEECC-CCCCCCCEECCBCHHH---HHHHHHHHHHHTCEEEETTCCS-SCSSCHHHHHHHHHHTTCEEEEETT--EE
T ss_pred --EEEEEC-CCCcCceEEcCCCHHH---HHHHHHHHHhcCCeEEECCCCc-ccccchHHHHHHHHHcCCeEEEcCC--EE
Confidence 488998 4899999999999998 666655 445578898987653 4556667799999999999998764 79
Q ss_pred EEeCCccccCCcceeecCChhhHHHHHHHHHccC--CEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeC
Q 014155 309 FIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTG--GTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTG 383 (429)
Q Consensus 309 ~I~g~~~l~~~~~~~v~~D~s~a~~~lalAa~~~--g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g 383 (429)
+|++..+++ +.++...+|...++.|++++++++ |+++|+|+...+.+ +| .++.++|++||++|+.++|+++|+|
T Consensus 292 ~v~~~~~l~-g~~i~~~~~~D~~p~lavla~~a~~~G~s~I~~~~~lrvkEtdRi~~~~~eL~klGa~i~~~~d~~~I~g 370 (450)
T 2o0b_A 292 EVRGPTGYD-GFDVDLRAVGELTPSVAALAALASPGSVSRLSGIAHLRGHETDRLAALSTEINRLGGTCRETPDGLVITA 370 (450)
T ss_dssp EEECCSCCC-CCEEECTTCGGGHHHHHHHHHTSSTTCEEEEESCGGGGGSSSCHHHHHHHHHHHTTCEEEEETTEEEEEC
T ss_pred EEecCCCcc-eeEEeCCCCHHHHHHHHHHHHhCCCCCcEEEECCcccccccchhHHHHHHHHHHCCCeEEEECCEEEEEC
Confidence 998765576 677776777777899999999999 99999998876666 56 4589999999999999999999997
Q ss_pred CCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 384 PPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 384 ~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
. +|+|..|++++|||++|+|+++++ ++|+++|+|+.
T Consensus 371 ~--------~l~g~~v~s~~DhR~ama~~iagl-~~~~~~I~~~~ 406 (450)
T 2o0b_A 371 T--------PLRPGIWRAYADHRMAMAGAIIGL-RVAGVEVDDIA 406 (450)
T ss_dssp C--------CCCCEEECCTTCHHHHHHHHHHHT-TSTTEEESCGG
T ss_pred c--------CCcCCeEECCcHHHHHHHHHHHHH-cCCCEEEcccC
Confidence 4 588999999999999999999999 88999999874
No 15
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=100.00 E-value=8.3e-32 Score=276.36 Aligned_cols=298 Identities=18% Similarity=0.210 Sum_probs=220.3
Q ss_pred CChhHHHHHHHHHHh-cCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEc--CCceeEEEEeCCCCcCCccCCCCceEE
Q 014155 96 GSKSLSNRILLLAAL-SEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEED--FAMKRAIVEGCGGLFPLAKQQTGEIEL 170 (429)
Q Consensus 96 gsKs~s~R~L~~aaL-~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~--~~~~~l~i~g~gg~~~~~~~~~~~~~i 170 (429)
+....+.|+++.++. .++.+++.|. +..||++.++++|++||++|++. ++..|++|+|.++ +.. ..+
T Consensus 89 ~~sgt~~rll~a~la~~~~~v~l~G~~~l~~Rpi~~~l~~L~~mGa~i~~~~~~g~~pi~i~~~~~-L~g-------~~i 160 (427)
T 1rf6_A 89 GNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKN-LRP-------IHY 160 (427)
T ss_dssp TTCHHHHHHHHHHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTT-CCC-------CEE
T ss_pred cccchHHHHHHHHHhcCCcEEEEeCCCccCCCCHHHHHHHHHHCCCEEEEEcCCCcceEEEeccCC-CCc-------eEE
Confidence 455577787654442 3468889985 46899999999999999999986 3335799987311 221 233
Q ss_pred EecCchhhhHHHHHHHHHc-CCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeC
Q 014155 171 FLGNAGTAMRPLTAAVTAA-GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249 (429)
Q Consensus 171 ~~g~sgts~r~L~a~l~a~-~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~ 249 (429)
... ..+.+++.++++++ ..++.+++... ..+||+.. ++|++||++|+..++ .+.|+|.+++++.+|.++
T Consensus 161 ~~~--~~ssq~~s~lllaA~~a~G~t~I~~~--~~~~~~i~--~~L~~~Ga~i~~~~~----~i~I~g~~~l~g~~~~v~ 230 (427)
T 1rf6_A 161 ELP--IASAQVKSALMFAALQAKGESVIIEK--EYTRNHTE--DMLQQFGGHLSVDGK----KITVQGPQKLTGQKVVVP 230 (427)
T ss_dssp ECS--SCCHHHHHHHHHHHTTSSEEEEEECS--SCCCCHHH--HHHHHTTCCCEEETT----EEEEEECCCCBCCEEECC
T ss_pred EeC--CCCHHHHHHHHHHHHhcCCCeEEEec--cCCHHHHH--HHHHHCCCCEEecCC----EEEEcCCcccCCCeEEcC
Confidence 332 12234444333221 23666666554 45788876 899999999987542 489999778998999999
Q ss_pred CCCCHHHHHHHHH-hcccCCCc-eEEEEccccCCchHHHHHHHHHHHcCCeEEEcCc--c---ceEEEeCCccccCCcce
Q 014155 250 GKLSSQYLTALLM-AAPLALGN-VEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS--W---DRFFIQGGQKYKSPGNA 322 (429)
Q Consensus 250 gd~Ssq~~salll-AA~~~~g~-~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~--~---~~i~I~g~~~l~~~~~~ 322 (429)
+|+|+ +++|+ |+++.+|+ ++|++.. ..+.+.. +++.|++||++|+...+ . +.++|+++ +++ +.++
T Consensus 231 ~D~~~---A~~~~~Aa~~~~g~~v~i~~~~-~~~~~~~--~~~~L~~mGa~i~~~~~~~~~~~~~i~v~~~-~l~-~~~i 302 (427)
T 1rf6_A 231 GDISS---AAFWLVAGLIAPNSRLVLQNVG-INETRTG--IIDVIRAMGGKLEITEIDPVAKSATLIVESS-DLK-GTEI 302 (427)
T ss_dssp BCHHH---HHHHHHHHHHSTTEEEEEEEEE-CCTTTCH--HHHHHHHTTCEEEEEEEETTTTEEEEEEECC-CCB-CCEE
T ss_pred CCHHH---HHHHHHHHHhCCCCEEEECCCC-CCCChhH--HHHHHHHcCCcEEEccccCCCCcceEEEeCC-CCC-cEEe
Confidence 99998 55555 45556676 8888765 2223322 89999999999997410 1 25888764 566 6555
Q ss_pred ee--cC---ChhhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCc
Q 014155 323 FV--EG---DASSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHL 394 (429)
Q Consensus 323 ~v--~~---D~s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L 394 (429)
.. .| |. ++.++++|++++|+++|+|+.+.+++ +| .+++++|+|||++|+.++|+++|+|. .+|
T Consensus 303 ~~~~~p~~~D~--~p~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i~~~~d~~~I~g~-------~~l 373 (427)
T 1rf6_A 303 CGALIPRLIDE--LPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGK-------SAL 373 (427)
T ss_dssp CTTSGGGTGGG--HHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEEC-------CCC
T ss_pred ccccCCChHHH--HHHHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEEEEECCEEEEeCC-------CCC
Confidence 32 23 44 77899999999999999999987777 56 56899999999999999999999986 258
Q ss_pred cceEEeCCCCChHHHHHHHHH-HcCCCcEEEeccc
Q 014155 395 RAVDVNMNKMPDVAMTLAVVA-LFADGPTAIRDGM 428 (429)
Q Consensus 395 ~g~~v~~~~~pr~am~lav~a-l~A~G~s~I~~a~ 428 (429)
+|..|++++|||++|+|++++ +.++|+++|+|+.
T Consensus 374 ~g~~v~s~~DhR~ama~~ia~~l~a~g~~~I~~~~ 408 (427)
T 1rf6_A 374 HGARVNTFGDHRIGMMTAIAALLVADGEVELDRAE 408 (427)
T ss_dssp CCEEEECTTCHHHHHHHHHHHHTCSSSCEEEETGG
T ss_pred CCCeEECCccHHHHHHHHHHHHhcCCCcEEEcccC
Confidence 899999999999999999999 9999999999975
No 16
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=99.98 E-value=1.7e-31 Score=275.66 Aligned_cols=295 Identities=21% Similarity=0.227 Sum_probs=222.4
Q ss_pred EccCChhHHHH----HHH-HHHh-cCCcEEEec--CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCC
Q 014155 93 TLPGSKSLSNR----ILL-LAAL-SEGTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQ 164 (429)
Q Consensus 93 ~vpgsKs~s~R----~L~-~aaL-~~g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~ 164 (429)
..|...-.+.| +|. +++. .++.+.+.| .+..||+..++++|++||++|+.+++ .+.+++.+ +...
T Consensus 107 ~~~~~~~~~~Ras~l~l~~l~a~~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g--~~~i~~~~--l~g~--- 179 (454)
T 3r38_A 107 DAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAVVKIENG--YIEATAEK--LVGA--- 179 (454)
T ss_dssp EECSHHHHHCGGGGGGHHHHHHHHSEEEEECCCCCSSSSCCSHHHHHHHHHTTCEEEEETT--EEEEECSS--CBCC---
T ss_pred cCChhHhhccchHHHHHHHHHhCCCCeEEEeCCCcccccCCHHHHHHHHHHCCCEEEecCC--EEEEEEcC--ccCc---
Confidence 44544445677 443 3333 335788888 56799999999999999999998654 45566532 2221
Q ss_pred CCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCe
Q 014155 165 TGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244 (429)
Q Consensus 165 ~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~ 244 (429)
...++..+++.+.++|+|++++ ++.+++.+. ..++++.+++++|++||++|+.. +..+++|+|.+++.+.
T Consensus 180 --~~~l~~~S~q~~s~lLlAa~la---~G~t~I~~~--~~~p~i~~t~~~L~~~Ga~I~~~---~~~~i~I~g~~~l~~~ 249 (454)
T 3r38_A 180 --KVYLDFPSVGATQNIMMAATLA---EGTTVIENV--AREPEIVDLANFLNQMGARVIGA---GTEVIRIEGVKELTAT 249 (454)
T ss_dssp --EEECSSCCHHHHHHHHHHHTTS---BSEEEEESC--CCCHHHHHHHHHHHHTTCCEECT---TSSEEEEECCSCEECC
T ss_pred --EEEecCCCHHHHHHHHHHHhcC---CCcEEEEcC--CCCcHHHHHHHHHHHCCCCEEEC---CCeEEEEecCcccccc
Confidence 2234445567788888887654 566777763 33566677799999999999853 2236999997678888
Q ss_pred eEEeCCCCCHHHHHHHH-HhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCccee
Q 014155 245 KVKLSGKLSSQYLTALL-MAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 323 (429)
Q Consensus 245 ~~~i~gd~Ssq~~sall-lAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~ 323 (429)
++++++|+|+ ++++ +|+++..|+++|++. ...++..++++|++||++|+..++ .|+|+|.++++ +.+++
T Consensus 250 ~~~v~~D~s~---A~~~l~aaal~gg~v~i~g~----~~~~~~~i~~~L~~mGa~i~~~~~--~i~V~g~~~L~-g~~i~ 319 (454)
T 3r38_A 250 EHSIIPDRIE---AGTFMIAAAITGGNVLIEDA----VPEHISSLIAKLEEMGVQIIEEEN--GIRVIGPDKLK-AVDVK 319 (454)
T ss_dssp EEECCBCHHH---HHHHHHHHHHTTCEEEEESC----CGGGGHHHHHHHHHTTCEEEEC----CEEEECCSSCC-CCCEE
T ss_pred ccccCCChhH---HHHHHHHHHHcCCcEEEcCC----CchHHHHHHHHHHHCCCEEEecCC--eEEEEECCCcc-ceEEe
Confidence 9999999988 5544 455566778888864 234567899999999999998775 69999866787 77776
Q ss_pred e------cCChhhHHHHHHHHHccCCEEEEE-ccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccc
Q 014155 324 V------EGDASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRA 396 (429)
Q Consensus 324 v------~~D~s~a~~~lalAa~~~g~v~i~-g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g 396 (429)
. |.|+ .+++++++++++|+++|. ++..+|++ ..++|++||++|++++|+++|+|+ .+|+|
T Consensus 320 ~~~~p~~p~D~--~~~l~~laa~A~G~t~i~e~i~~~R~~----~~~~L~~mGa~i~~~~d~l~I~G~-------~~l~g 386 (454)
T 3r38_A 320 TMPHPGFPTDM--QSQMMVIQMLSEGTSIMTETVFENRFM----HVEEMRRMNADMKIEGHSVIISGP-------AKLQG 386 (454)
T ss_dssp BCSTTSBCGGG--HHHHHHHHHHSSSEEEEECSSCTTCCT----THHHHHHTTCCEEEETTEEEEECS-------CCCBC
T ss_pred cccCCCCcccH--HHHHHHHHHhcCCCEEEEcCccccHHH----HHHHHHhCCCEEEEECCEEEEeCC-------CCcee
Confidence 3 2376 457888889999999998 56667765 468999999999999999999987 36899
Q ss_pred eEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 397 VDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 397 ~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
.+|++ .|||++|+++++|+.++|+++|+|+.
T Consensus 387 ~~v~~-~DhR~Ama~~vaal~a~G~~~I~~~~ 417 (454)
T 3r38_A 387 AEVAA-TDLRAAAALILAGLVADGYTQVTELK 417 (454)
T ss_dssp CEEEC-CSHHHHHHHHHHHHHSBSEEEEECTH
T ss_pred eEEec-CCHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 99999 79999999999999999999999864
No 17
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=99.97 E-value=7.4e-31 Score=272.41 Aligned_cols=298 Identities=18% Similarity=0.188 Sum_probs=213.2
Q ss_pred HHHHHHH-HHHh-cCCcEEEec--CCC----chhHHHHHHHHHHcCCEEEEcC-CceeEEEEeC-CCCcCC-ccCCCCce
Q 014155 100 LSNRILL-LAAL-SEGTTVVDN--LLS----SEDIHHMLDALKKLGLNVEEDF-AMKRAIVEGC-GGLFPL-AKQQTGEI 168 (429)
Q Consensus 100 ~s~R~L~-~aaL-~~g~~~i~g--~l~----~~dv~~ll~aL~~lGa~v~~~~-~~~~l~i~g~-gg~~~~-~~~~~~~~ 168 (429)
.+.|+|. +++. ..+.+++.| .+. .||+..++++|++||++|++.+ +..|+++.+- ++.+.. + .++ ++
T Consensus 107 ts~~~l~~l~a~~~~~~~~l~G~~~l~~~~~~RPi~~~~~~L~~lGa~i~~~~~g~~p~~~~~l~g~~i~l~~-~sS-SS 184 (479)
T 4fqd_A 107 GSLYLLPALVSRNGVARLSASGGCPIGEGPRGRPDEHLLDVMGRFGVTTRLTADGSVDLTAQRLTPCTIDMLD-YTR-NK 184 (479)
T ss_dssp GGGGGHHHHHHHTSEEEECC------------CCCHHHHHHHHTTTCEEEECTTSCEEEECSSCCCCEEEGGG-GCS-BT
T ss_pred hhHHHHHHHHhcCCCeEEEEeCCcccccCCCCCChHHHHHHHHHCCCEEEeccCCceEEEEcCccccEEEecc-ccc-hH
Confidence 4567664 3343 335677887 456 9999999999999999999864 4456553111 112222 1 110 12
Q ss_pred EEEecC--chhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecC---CCCCC
Q 014155 169 ELFLGN--AGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK---GGLPG 243 (429)
Q Consensus 169 ~i~~g~--sgts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~---~~l~~ 243 (429)
||.+|. .+.+-|+|++++++ ++.+++.+. ..++.+.+++++|++||++|+..++ + .++|+|. +.+.+
T Consensus 185 QfiS~lq~v~~t~~lLlaa~la---~G~t~I~~~--~~~pdi~~Tl~~L~~~Ga~I~~~~~-~--~i~I~g~g~~~~l~~ 256 (479)
T 4fqd_A 185 ALMSGPCYSGAVKTALLMGAVT---HGTTTLQHP--YLKPDVTDMVTVLRDLGADIEFAGP-E--TWVIHGRGPESLHRP 256 (479)
T ss_dssp TTTBCTTHHHHHHHHHHHHHTS---EEEEEEESC--CCSHHHHHHHHHHHHHTCCEEEEET-T--EEEEEEECGGGCCCC
T ss_pred HhhccchhHHHHHHHHHHHHhC---CCcEEEecC--CCChHHHHHHHHHHHCCCeEEEcCC-C--EEEEeCCCCCCccCC
Confidence 443331 24455667766654 667777753 3455556669999999999987532 2 4899986 57889
Q ss_pred eeEEeCCCCCHHHHHHHHHhcc-c-CCCceEEEEccccCCch-HHHHHHHHHHHcCCeEEEcCccceEEEeC-CccccCC
Q 014155 244 GKVKLSGKLSSQYLTALLMAAP-L-ALGNVEIEIIDKLISVP-YVEMTLKLMERFGVFVEHSDSWDRFFIQG-GQKYKSP 319 (429)
Q Consensus 244 ~~~~i~gd~Ssq~~salllAA~-~-~~g~~~I~~~~~~~s~~-~~~~tl~~L~~~G~~i~~~~~~~~i~I~g-~~~l~~~ 319 (429)
.++.|++|+|+ ++++|+++ + ..|+++|++... .+.+ .+..++++|++||++|+..++ .++|.+ ..+++ +
T Consensus 257 ~~~~V~~D~s~---Ag~fl~aaal~~gg~v~l~g~~~-~s~~~~~~~i~~~L~~mGa~i~~~~~--~i~v~~~~~~L~-g 329 (479)
T 4fqd_A 257 VDVTLIPDLIE---VVTWICAGVLLADEPLRITGPGI-DRAVHALAPEFDLLDRMGVRVDVGAD--EVTAHPLTKPLR-P 329 (479)
T ss_dssp EEEECCBCHHH---HHHHHHHHHHHBSSCEEEECTTH-HHHHHHTHHHHHHHHHHTCCEEECSS--EEEECCCSSCBC-C
T ss_pred CceEeCCChHh---HHHHHHHHHHcCCCeEEEeCCCC-ccccCchHHHHHHHHHCCCEEEEcCC--eEEEEecCCCCC-C
Confidence 99999999998 66665544 4 467899987541 2223 457799999999999998774 799988 44676 7
Q ss_pred cceee-----cCChhhHHHHHHHHHccCCEEEEE-ccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCC
Q 014155 320 GNAFV-----EGDASSASYFVAGAAVTGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKH 393 (429)
Q Consensus 320 ~~~~v-----~~D~s~a~~~lalAa~~~g~v~i~-g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~ 393 (429)
.+++. ++|. .+.++++|++++|+++|+ ++..+|+. +.++|++||++|++++|.++|+|.. +
T Consensus 330 ~~i~~~~~~~~~D~--~p~l~~~a~~A~G~t~I~e~i~e~R~~----~~~eL~~lGa~i~~~~d~~~I~g~~-------~ 396 (479)
T 4fqd_A 330 VEFTAMSRGVFSDS--QPFLALLGAYAEGPTYIREAVWEHRFG----FAPELEALGIRTAVDDTVLRVDGPC-------P 396 (479)
T ss_dssp CEEEECTTSBCTTT--HHHHHHHHTTBSEEEEEEESSSSSCCT----THHHHHHHTCCEEEETTEEEEEESC-------C
T ss_pred eEEecCCCCCCHHH--HHHHHHHHHhCCCcEEEEcCCcccHHH----HHHHHHHCCCeEEEECCEEEEeCCC-------c
Confidence 77754 4677 567888999999999995 66566653 7899999999999999999999862 5
Q ss_pred c--cceEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 394 L--RAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 394 L--~g~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
+ +|.+|++ .|||++|+++++|+.++|+++|+|..
T Consensus 397 l~~~g~~V~~-~DhR~Ama~~vaal~~~g~i~I~~~~ 432 (479)
T 4fqd_A 397 PHRPGTDLRA-TDLRAAAVLLLAALAVPGRTTLRNHH 432 (479)
T ss_dssp CCCCSEEEEC-CSHHHHHHHHHHHTTSSSEEEEECGG
T ss_pred ccCCCcEEeC-CCHHHHHHHHHHHHhCCCeEEEcCcc
Confidence 7 7899999 79999999999999999999999874
No 18
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=99.97 E-value=2.3e-29 Score=259.58 Aligned_cols=306 Identities=18% Similarity=0.202 Sum_probs=218.6
Q ss_pred CChhHHHHHHHHHHh-cCCcEEEecC--CCchhHHHHHHHHHHcCCEEEEcC-CceeEEEEeCCCCcCCccCCCCceEEE
Q 014155 96 GSKSLSNRILLLAAL-SEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDF-AMKRAIVEGCGGLFPLAKQQTGEIELF 171 (429)
Q Consensus 96 gsKs~s~R~L~~aaL-~~g~~~i~g~--l~~~dv~~ll~aL~~lGa~v~~~~-~~~~l~i~g~gg~~~~~~~~~~~~~i~ 171 (429)
++...+.|+|+.++. .++.+++.|. +..||++.++++|++||++|++.+ +..|++|+|.++ +.. ..+.
T Consensus 92 ~~sgt~~r~l~~~l~~~~~~v~l~G~~~l~~Rp~~~~l~~L~~~Ga~i~~~~~g~~Pi~i~~~~~-l~g-------~~i~ 163 (445)
T 2pqc_A 92 GNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKT-PTP-------ITYR 163 (445)
T ss_dssp TTCHHHHHHHHHHHHTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEEEEECCSS-CCC-------CEEE
T ss_pred hhhhHHHHHHHHHHhcCCcEEEEECCccCCCCChHHHHHHHHHCCCEEEeccCCcccEEEeCCCC-CCC-------eEEE
Confidence 455578888775443 4578999995 457999999999999999999865 446799987421 211 1233
Q ss_pred ec-Cc-hhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeC-CCCcCcEEEecCCCCCCeeEEe
Q 014155 172 LG-NA-GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCIL-GTNCPPVRINGKGGLPGGKVKL 248 (429)
Q Consensus 172 ~g-~s-gts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~-~~~~~pv~I~g~~~l~~~~~~i 248 (429)
+. .+ .....++++++++ ++.+++.+. +.+||+. .++|++||++|+.+. +.+...+.|+|.+++++.++.+
T Consensus 164 ~~~~ssq~~~~lllaa~~a---~G~t~I~~~--~~~~~~~--~~~L~~~Ga~I~~~~~~~g~~~~~I~g~~~l~~~~~~v 236 (445)
T 2pqc_A 164 VPMASAQVKSAVLLAGLNT---PGITTVIEP--IMTRDHT--EKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDV 236 (445)
T ss_dssp CSSSCHHHHHHHHHHHHTS---SSEEEEEES--SCCCCHH--HHHHHHTTCCEEEEECTTSCEEEEEETTCCCBCCEEEC
T ss_pred eCCCCHHHHHHHHHHHhhC---CCceEEEEc--cCCHHHH--HHHHHHCCCEEEEecCCCCccEEEEeCCccccCceeEc
Confidence 32 11 2223344444433 455655553 5577754 499999999998641 2111248999977788889999
Q ss_pred CCCCCHHHHHHHHHhcccCCCc-eEEEEccccCCchHHHHHHHHHHHcCCeEEEc-----C-c-cceEEEeCCccccCCc
Q 014155 249 SGKLSSQYLTALLMAAPLALGN-VEIEIIDKLISVPYVEMTLKLMERFGVFVEHS-----D-S-WDRFFIQGGQKYKSPG 320 (429)
Q Consensus 249 ~gd~Ssq~~salllAA~~~~g~-~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~-----~-~-~~~i~I~g~~~l~~~~ 320 (429)
++|+|+ .++|++|+++++|. ++|.+.. ....+. + +++.|++||++|+.. + + ...++|+++ +++ +.
T Consensus 237 ~~D~s~--a~~~l~aa~~~~g~~v~i~~~~-~~~~~~-~-~~~~L~~mGa~i~~~~~~~~~g~~~~~i~v~~~-~l~-~~ 309 (445)
T 2pqc_A 237 PGDPSS--TAFPLVAALLVPGSDVTILNVL-MNPTRT-G-LILTLQEMGADIEVINPRLAGGEDVADLRVRSS-TLK-GV 309 (445)
T ss_dssp CBCHHH--HHHHHHHHHHSTTCEEEEEEEE-CCGGGC-H-HHHHHHHHTCEEEEEEEEEETTEEEEEEEEECC-CCB-CC
T ss_pred CCCHHH--HHHHHHHHHHCCCCEEEECCCC-CCCCcc-h-HHHHHHHcCCeEEEccccccCCCccCcEEEeCC-CCC-ce
Confidence 999998 24444555566666 8888764 222222 3 899999999999972 2 1 135888874 566 66
Q ss_pred ceeecCCh---hhHHHHHHHHHccCCEEEEEccCCCCcc-ch--HHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCC-C
Q 014155 321 NAFVEGDA---SSASYFVAGAAVTGGTVTVEGCGTSSLQ-GD--VKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRK-H 393 (429)
Q Consensus 321 ~~~v~~D~---s~a~~~lalAa~~~g~v~i~g~~~~~~q-~D--~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~-~ 393 (429)
+++.++-+ ..++.++++|++++|+++|+|+.+.+++ +| .+++++|++||++|+.++|.++|+|... . +
T Consensus 310 ~i~~~~~p~~~D~~p~l~~~a~~a~G~s~i~~~~~lr~kEsdRi~~~~~eL~~~Ga~i~~~~d~~~I~g~~~-----~~~ 384 (445)
T 2pqc_A 310 TVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPD-----GKG 384 (445)
T ss_dssp EECGGGGGGTGGGHHHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSCEEEECCTT-----CTT
T ss_pred EeccccCCchHHHHHHHHHHHHhCCCcEEEEcccccccccchHHHHHHHHHHHCCCEEEEcCCEEEEeCCCC-----CCc
Confidence 66433211 2467899999999999999999887777 56 4578999999999999999999998510 1 3
Q ss_pred c--cc-eEEeCCCCChHHHHHHHHHHcCCCcEEEeccc
Q 014155 394 L--RA-VDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 394 L--~g-~~v~~~~~pr~am~lav~al~A~G~s~I~~a~ 428 (429)
| ++ .+|++++|||++|+|+++++.++|+++|+|+.
T Consensus 385 l~~~~~~~v~~~~DhR~ama~~ia~l~~~g~~~I~~~~ 422 (445)
T 2pqc_A 385 LGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDAT 422 (445)
T ss_dssp CSCTTCCEECCTTCHHHHHHHHHHHTTSSSCEEESCCT
T ss_pred cccCCCceEECCCcHHHHHHHHHHHhcCCCCEEEcccc
Confidence 5 56 89999999999999999999999999999975
No 19
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=99.97 E-value=1.7e-29 Score=258.69 Aligned_cols=272 Identities=17% Similarity=0.189 Sum_probs=203.9
Q ss_pred cEEEec--CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEec--CchhhhHHHHHHHHHc
Q 014155 114 TTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLG--NAGTAMRPLTAAVTAA 189 (429)
Q Consensus 114 ~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g--~sgts~r~L~a~l~a~ 189 (429)
.+.+.| .+..||+..++++|++||++|+++++ .+.+++.+ .+.. ..+... .+..+..++++++++
T Consensus 108 ~v~l~G~~~l~~rp~~~~~~~L~~mGa~i~~~~g--~~~v~~~~-~L~g-------~~i~~~~~s~~~~~~ll~aa~~a- 176 (419)
T 1ejd_A 108 QVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEG--YVKASVNG-RLKG-------AHIVMDKVSVGATVTIMSAATLA- 176 (419)
T ss_dssp EEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETT--EEEEECSS-SCBC-------CEEECSSCCHHHHHHHHHHHTTS-
T ss_pred EEEecCCcccCCCchHHHHHHHHHCCCEEEEcCC--EEEEEEcC-Cccc-------eEEecCCCCHHHHHHHHHHHhcC-
Confidence 566776 45689999999999999999998654 45555432 1221 223332 122333344444333
Q ss_pred CCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcc-cC
Q 014155 190 GGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAP-LA 267 (429)
Q Consensus 190 ~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~-~~ 267 (429)
++.+++.+. .++|+.++ +++|++||++|+.... + .++|+|.+++++.++.+++|+|+ ++++++|+ +.
T Consensus 177 --~G~t~I~~~---~~e~~i~~t~~~L~~~Ga~i~~~~~-~--~i~I~g~~~l~g~~~~v~~D~s~---A~~~~~aa~~~ 245 (419)
T 1ejd_A 177 --EGTTIIENA---AREPEIVDTANFLVALGAKISGQGT-D--RITIEGVERLGGGVYRVLPDRIE---TGTFLVAAAIS 245 (419)
T ss_dssp --BSEEEEETC---CCCHHHHHHHHHHHHTTCEEECTTS-S--EEEEECCSCBCCEEEECCBCHHH---HHHHHHHHHTT
T ss_pred --CCcEEEEeC---CCCchHHHHHHHHHHCCCEEEEccC-C--EEEEeCCCcccccEEEeeCCHHH---HHHHHHHHHhc
Confidence 556667763 35677776 9999999999986321 2 48999977899999999999998 66665554 45
Q ss_pred CCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeC-CccccCCcceeec--C----ChhhHHHHHHHHHc
Q 014155 268 LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG-GQKYKSPGNAFVE--G----DASSASYFVAGAAV 340 (429)
Q Consensus 268 ~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g-~~~l~~~~~~~v~--~----D~s~a~~~lalAa~ 340 (429)
+|+++|++.. ...+ ..+++.|++||++|+..++ .++|++ +.+++ +.++... | |. .+.++++|++
T Consensus 246 ~g~v~i~~~~---~~~~-~~~~~~L~~mGa~i~~~~~--~i~v~~~~~~l~-~~~i~~~~~p~~~~D~--~p~la~la~~ 316 (419)
T 1ejd_A 246 GGKIVCRNAQ---PDTL-DAVLAKLREAGADIETGED--WISLDMHGKRPK-AVTVRTAPHPAFPTDM--QAQFTLLNLV 316 (419)
T ss_dssp TCEEEEESCC---GGGC-HHHHHHHHHTTCEEEECSS--EEEEECTTCCCB-CCCEECCSTTSCCGGG--HHHHHHHHHT
T ss_pred CCeEEEeCcC---cccH-HHHHHHHHHCCCEEEEcCC--EEEEEecCCCcc-ceEEeCCCCCCCcHHH--HHHHHHHHHh
Confidence 6788888764 2333 3689999999999998764 789986 33566 6665432 1 55 6789999999
Q ss_pred cCCEEEEE-ccCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCChHHHHHHHHHHcCC
Q 014155 341 TGGTVTVE-GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD 419 (429)
Q Consensus 341 ~~g~v~i~-g~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr~am~lav~al~A~ 419 (429)
++|+++|+ ++.++|++ .+++|+|||++|+.++|+++|+|+ .+|+|.+|++ +|||++|+|+++++.++
T Consensus 317 a~g~s~i~~~i~~~R~~----~~~eL~~lG~~i~~~~d~~~I~g~-------~~l~g~~v~~-~DhR~ama~~ia~l~~~ 384 (419)
T 1ejd_A 317 AEGTGVITETIFENRFM----HVPELIRMGAHAEIESNTVICHGV-------EKLSGAQVMA-TDLRASASLVLAGCIAE 384 (419)
T ss_dssp SBSEEEEECCSCSSCCT----HHHHHHHTTCEEEEETTEEEEECC-------SCCBCCEECC-SSHHHHHHHHHHHHHSB
T ss_pred CCCcEEEEccchHhHHH----HHHHHHHCCCEEEEECCEEEEeCC-------CCCcCCEEeC-CcHHHHHHHHHHHhcCC
Confidence 99999999 78888886 589999999999999999999986 2588999998 69999999999999999
Q ss_pred CcEEEeccc
Q 014155 420 GPTAIRDGM 428 (429)
Q Consensus 420 G~s~I~~a~ 428 (429)
|+++|+|+.
T Consensus 385 g~~~I~~~~ 393 (419)
T 1ejd_A 385 GTTVVDRIY 393 (419)
T ss_dssp EEEEECCTH
T ss_pred CCEEECCcC
Confidence 999999864
No 20
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=99.97 E-value=4.6e-29 Score=255.85 Aligned_cols=286 Identities=18% Similarity=0.165 Sum_probs=210.6
Q ss_pred HHHHHHH-HHHhcC-CcEEEec--CCCchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCc
Q 014155 100 LSNRILL-LAALSE-GTTVVDN--LLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNA 175 (429)
Q Consensus 100 ~s~R~L~-~aaL~~-g~~~i~g--~l~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~s 175 (429)
.+.|+|. +++... +.+.+.| .+..||+..++++|++||++|+++++. +.++.. .+... ...+...++
T Consensus 101 ts~~~l~~l~a~~~~~~~~l~G~~~l~~RPi~~~~~~L~~lGa~i~~~~g~--~~i~~~--~l~g~-----~i~~~~~S~ 171 (425)
T 2yvw_A 101 ASVLSLGPLLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGY--VYVNLK--EKRRV-----HFKFDLVTV 171 (425)
T ss_dssp GGGGGHHHHHHHHSEEEEECCCCBTTBCCCCHHHHHHHHHTTCEEEEETTE--EEEECS--SCCCC-----EEECSSCCH
T ss_pred hHHHHHHHHhccCCcEEEEECCCcccccCCHHHHHHHHHHCCCEEEecCCE--EEEEec--Cccce-----EEecccccH
Confidence 3445654 334333 4788998 567999999999999999999875443 444432 12211 122222456
Q ss_pred hhhhHHHHHHHHHcCCCeEEEEcCCCCCCCCChHHH-HHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCH
Q 014155 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254 (429)
Q Consensus 176 gts~r~L~a~l~a~~~~~~~~l~g~~~l~~rpi~~l-~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ss 254 (429)
..+.++|++++++ ++.+++.+. -++|+.++ +++|++||++|+...+ + .+ |++.+++++.++.+++|+|+
T Consensus 172 ~~~s~lllaa~la---~g~t~i~~~---~~~~~i~~t~~~L~~~Ga~i~~~~~-~--~i-I~g~~~l~~~~~~v~~D~s~ 241 (425)
T 2yvw_A 172 TGTENALLYLASV---PEESILENI---ALEPEVMDLIEVLKKMGAHVKVEGR-S--AY-VKGSENLKGFTHSVIPDRIE 241 (425)
T ss_dssp HHHHHHHHHHTTC---SSEEEEESC---CCCHHHHHHHHHHHHTTCEEEEETT-E--EE-EECCSSCCCCEEECCBCHHH
T ss_pred HHHHHHHHHHHhc---CCCEEEeCC---CCCchHHHHHHHHHHCCCeEEEcCC-E--EE-EeCCCccCCccccccCchhH
Confidence 6677788877665 455667752 35555555 9999999999986432 2 37 88866788889999999988
Q ss_pred HHHHH-HHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceeec-----C-C
Q 014155 255 QYLTA-LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVE-----G-D 327 (429)
Q Consensus 255 q~~sa-lllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v~-----~-D 327 (429)
++ |++|+++..|+++|++.. .+....++++|++||++|+..++ .|+|++..+++ +.+++.. + |
T Consensus 242 ---A~t~l~aaal~~g~v~l~g~~----~~~~~~l~~~L~~mGa~i~~~~~--~i~i~~~~~L~-g~~i~~~~~p~~p~d 311 (425)
T 2yvw_A 242 ---AGTFMVGAVLTDGEILLENAR----INHLRAVVEKLKLIGGEVVEENG--NLRVFRKESLR-ACDIETQVYPGFPTD 311 (425)
T ss_dssp ---HHHHHHHHHHTTCEEEEESCC----GGGCHHHHHHHHHHTEEEEEETT--EEEEEECSCCB-CCCEEBCSTTSBCHH
T ss_pred ---HHHHHHHHHhCCCcEEEeCCC----chHHHHHHHHHHHCCCEEEEcCC--EEEEEecCCcc-ceEEeCCCCCCCccc
Confidence 44 455555667888888742 34455789999999999998653 69998744577 7776542 2 5
Q ss_pred hhhHHHHHHHHHccCCEEEEEc-cCCCCccchHHHHHHHHHcCCEEEEeCCeEEEeCCCCCCCCCCCccceEEeCCCCCh
Q 014155 328 ASSASYFVAGAAVTGGTVTVEG-CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD 406 (429)
Q Consensus 328 ~s~a~~~lalAa~~~g~v~i~g-~~~~~~q~D~~~~~~L~kMGa~v~~~~~~i~I~g~~~~~~~~~~L~g~~v~~~~~pr 406 (429)
. .+.|++++++++|+++|++ +..++. ..+++|++||++|+.++|+++|+|. .+++|.+++. .|||
T Consensus 312 ~--~~~~~~aa~~a~G~t~I~~~~~e~r~----~~~~~L~~~Ga~i~~~~d~l~I~g~-------~~l~g~~v~~-~D~r 377 (425)
T 2yvw_A 312 M--QAQFMALLSVAKGKSRIKENIFEHRF----HHAQELNRLGANITVRGNTAYVEGV-------ERLYGSEVYS-TDLR 377 (425)
T ss_dssp H--HHHHHHHHTTSBSEEEEECSSCTTCC----HHHHHHHTTTCCEEEETTEEEEECC-------SCCBCCEEEC-CCTT
T ss_pred H--HHHHHHHHHHCCCeEEEEcCcHHHHH----HHHHHHHhCCCEEEEECCEEEEeCC-------CCCcCCeecC-CcHH
Confidence 5 4578889999999999996 555444 4689999999999999999999986 2688888987 5999
Q ss_pred HHHHHHHHHHcCCCcEEEeccc
Q 014155 407 VAMTLAVVALFADGPTAIRDGM 428 (429)
Q Consensus 407 ~am~lav~al~A~G~s~I~~a~ 428 (429)
++|+++++++.++|+++|+|..
T Consensus 378 ~A~~~~~aal~a~g~v~I~~~~ 399 (425)
T 2yvw_A 378 ASASLVLAGLVAQGETVVRDVY 399 (425)
T ss_dssp TTHHHHHHHHHSBSEEEEECTH
T ss_pred HHHHHHHHHHhCCCcEEEeCce
Confidence 9999999999999999999863
No 21
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=94.08 E-value=1.8 Score=42.46 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCcEEEecCCCch-------hHHHHHHHHHHc-CCEEEEcCC-ceeEEEEeCCCCcCCccCCCCceEE
Q 014155 100 LSNRILLLAALSEGTTVVDNLLSSE-------DIHHMLDALKKL-GLNVEEDFA-MKRAIVEGCGGLFPLAKQQTGEIEL 170 (429)
Q Consensus 100 ~s~R~L~~aaL~~g~~~i~g~l~~~-------dv~~ll~aL~~l-Ga~v~~~~~-~~~l~i~g~gg~~~~~~~~~~~~~i 170 (429)
...-.|.+++|+..+++|+|.=..| .=...++++.++ |++++-.+- ...++..+.. +... +..+
T Consensus 38 ~lR~alaLS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~f~PG~--i~gg-----~~~~ 110 (358)
T 3tut_A 38 ILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRPGT--VRGG-----DYRF 110 (358)
T ss_dssp HHHHHHHHHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEEEECCC--CCCC-----EEEE
T ss_pred HHHHHHHHHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEEEECCC--ccCc-----eEEE
Confidence 3444567899999999999953222 222235555553 888886542 2356665532 2111 3467
Q ss_pred EecCchhh---hHHHHHHHHHcCCCeEEEEcCCCCCC-CCChHHH----HHHHHHcCCEEEE
Q 014155 171 FLGNAGTA---MRPLTAAVTAAGGNLSYILDGVPRMR-ERPIGDL----VTGLKQLGADVDC 224 (429)
Q Consensus 171 ~~g~sgts---~r~L~a~l~a~~~~~~~~l~g~~~l~-~rpi~~l----~~~L~~~Ga~V~~ 224 (429)
+++.+|.. +++++++++.+..+.++++.|+-.-. +.+++.+ +-.|++||++++.
T Consensus 111 d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~~l 172 (358)
T 3tut_A 111 AIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQT 172 (358)
T ss_dssp ECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCEEE
T ss_pred ECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 77766654 44566655544567788888875432 4555544 4478999998764
No 22
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=90.59 E-value=2.6 Score=41.47 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=74.2
Q ss_pred EEccCChhHHHHHHHHHHhcCCcEEEecCCCchh------H-HHHHHHHHHc-CCEEEE-cCCceeEEEEeCCCCcCCcc
Q 014155 92 VTLPGSKSLSNRILLLAALSEGTTVVDNLLSSED------I-HHMLDALKKL-GLNVEE-DFAMKRAIVEGCGGLFPLAK 162 (429)
Q Consensus 92 i~vpgsKs~s~R~L~~aaL~~g~~~i~g~l~~~d------v-~~ll~aL~~l-Ga~v~~-~~~~~~l~i~g~gg~~~~~~ 162 (429)
+..-|+... .-.|.+++|+..+++|+|.=..|+ - ...+++|+++ +++++. +.+...++..+.. +...
T Consensus 9 ~~f~GgQil-R~alaLS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg~--i~gG- 84 (365)
T 3pqv_A 9 VTFEGSRNF-RLRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGI--ITGG- 84 (365)
T ss_dssp EEEESSTTH-HHHHHHHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECCE--ECCE-
T ss_pred EEEeChhHH-HHHHHHHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECCc--ccCC-
Confidence 345566533 334678999999999999643332 2 3345666664 445443 2233456655431 1111
Q ss_pred CCCCceEEEecCchhhhHHHHHHHHHc---CCCeEEEEcCCCCC-CCCChHHH----HHHHHHcCCE-EEE
Q 014155 163 QQTGEIELFLGNAGTAMRPLTAAVTAA---GGNLSYILDGVPRM-RERPIGDL----VTGLKQLGAD-VDC 224 (429)
Q Consensus 163 ~~~~~~~i~~g~sgts~r~L~a~l~a~---~~~~~~~l~g~~~l-~~rpi~~l----~~~L~~~Ga~-V~~ 224 (429)
+..++++.+|....+|.+++..+ ..+.++++.|+-.- .+.+++.+ +-.|++||++ ++.
T Consensus 85 ----~~~~d~~tagSi~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~~~~l 151 (365)
T 3pqv_A 85 ----SYTHQCPNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRECAL 151 (365)
T ss_dssp ----EEEEECCTTSCHHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCCSCEE
T ss_pred ----eEEEECCCCcchHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 34678888877666655544433 35778888886443 35555554 4478999997 654
No 23
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=84.01 E-value=23 Score=34.52 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred HHHHHH-cCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCC--CCHH-HHHHHHHhcccCCCceEEE--Ecccc---CCc
Q 014155 212 VTGLKQ-LGADVDCILGTNCPPVRINGKGGLPGGKVKLSGK--LSSQ-YLTALLMAAPLALGNVEIE--IIDKL---ISV 282 (429)
Q Consensus 212 ~~~L~~-~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd--~Ssq-~~salllAA~~~~g~~~I~--~~~~~---~s~ 282 (429)
++++.+ .|++|+..+. |...+...++ .+.+++|+.+-. -|-. ++-++|..++++.+.++|. +..+. .+.
T Consensus 75 l~ll~~it~a~veg~~~-GSt~l~f~PG-~i~gg~~~~d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psv 152 (358)
T 3tut_A 75 VKAATEICGATVEGAEL-GSQRLLFRPG-TVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 152 (358)
T ss_dssp HHHHHHHHTCEEECCST-TCSCEEEECC-CCCCCEEEEECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCH
T ss_pred HHHHHHhhCCEEEEeec-CcEEEEEECC-CccCceEEEECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCH
Confidence 455544 3889987542 3334777665 688888877632 3333 4446777777887766654 33221 133
Q ss_pred hHHH-HHHHHHHHcCCeEEE
Q 014155 283 PYVE-MTLKLMERFGVFVEH 301 (429)
Q Consensus 283 ~~~~-~tl~~L~~~G~~i~~ 301 (429)
.|++ .++.+|++||++++.
T Consensus 153 Dy~~~v~lP~l~~fG~~~~l 172 (358)
T 3tut_A 153 DFIRRVLEPLLAKIGIHQQT 172 (358)
T ss_dssp HHHHHTHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHcCCcEEE
Confidence 4544 478999999998764
No 24
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=48.53 E-value=20 Score=35.12 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=55.0
Q ss_pred HHHHHHHccCCEEEEEccCCCCcc-c--h--HHHHHHHHHc-CCEEEEe---CCeEEEeCCCCCCCCCCCccce--EEeC
Q 014155 333 YFVAGAAVTGGTVTVEGCGTSSLQ-G--D--VKFAEVLEKM-GAKVTWT---ENSVTVTGPPRDPYGRKHLRAV--DVNM 401 (429)
Q Consensus 333 ~~lalAa~~~g~v~i~g~~~~~~q-~--D--~~~~~~L~kM-Ga~v~~~---~~~i~I~g~~~~~~~~~~L~g~--~v~~ 401 (429)
+-++++++++-+++|.|+..++.+ + + ..+++.|+++ +++++.. ...++..+. .++|. ++|+
T Consensus 19 ~alaLS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg--------~i~gG~~~~d~ 90 (365)
T 3pqv_A 19 LRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPG--------IITGGSYTHQC 90 (365)
T ss_dssp HHHHHHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECC--------EECCEEEEEEC
T ss_pred HHHHHHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECC--------cccCCeEEEEC
Confidence 568999999999999999877755 2 2 5678888887 5555432 334655554 45554 4555
Q ss_pred CCCCh---HHHHHHHHHHcCCCcEEEe
Q 014155 402 NKMPD---VAMTLAVVALFADGPTAIR 425 (429)
Q Consensus 402 ~~~pr---~am~lav~al~A~G~s~I~ 425 (429)
..--- ++.++..+++|+++++.|+
T Consensus 91 ~tagSi~l~l~~lL~~a~f~~~p~~l~ 117 (365)
T 3pqv_A 91 PNSKPVGYFAEPMLYLAPFSKKKFSIL 117 (365)
T ss_dssp CTTSCHHHHHGGGGGTGGGSSSCEEEE
T ss_pred CCCcchHHHHHHHHHHHhcCCCcEEEE
Confidence 43211 3455566777888887653
No 25
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=48.21 E-value=96 Score=24.21 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=49.3
Q ss_pred CeEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCce
Q 014155 192 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNV 271 (429)
Q Consensus 192 ~~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~ 271 (429)
..++++....-|..||...+++..++|..+|+...+ + .++++ .| +-+++..+..-+..+
T Consensus 15 ~~~v~I~n~~GLHARPAa~~v~~A~~f~s~I~i~~~-~----------------~~vdA-KS---Im~lmsLg~~~G~~i 73 (100)
T 1kkl_H 15 QKTFKVTADSGIHARPATVLVQTASKYDADVNLEYN-G----------------KTVNL-KS---IMGVMSLGIAKGAEI 73 (100)
T ss_dssp CEEEEBCCTTCSCHHHHHHHHHHHHTCSSEEEEEET-T----------------EEEET-TC---HHHHHHTCCCTTCEE
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHhhCCCeEEEEEC-C----------------EEEec-Hh---HHHHhcCCCCCCCEE
Confidence 345667665558899999999999999998876321 1 12332 23 255665444444457
Q ss_pred EEEEccccCCchHHHHHHHHHHH
Q 014155 272 EIEIIDKLISVPYVEMTLKLMER 294 (429)
Q Consensus 272 ~I~~~~~~~s~~~~~~tl~~L~~ 294 (429)
+|...++ +....++.+.++++.
T Consensus 74 ~i~a~G~-Dee~Al~~l~~li~~ 95 (100)
T 1kkl_H 74 TISASGA-DENDALNALEETMKS 95 (100)
T ss_dssp EEEEEST-THHHHHHHHHHHHHH
T ss_pred EEEEeCC-CHHHHHHHHHHHHHh
Confidence 7665432 234455666666664
No 26
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=41.81 E-value=1.1e+02 Score=23.05 Aligned_cols=80 Identities=8% Similarity=0.061 Sum_probs=47.8
Q ss_pred eEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceE
Q 014155 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE 272 (429)
Q Consensus 193 ~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~ 272 (429)
.++++....-|..||...+++..++|..+|+...+ + ..+++ .| +-+++..+..-+..++
T Consensus 4 ~~v~i~~~~GlHARpAa~~v~~a~~f~s~I~i~~~-~----------------~~vda-KS---im~lm~L~~~~g~~i~ 62 (88)
T 1y51_A 4 KTFKVVSDSGIHARPATILVQTASKWNSEIQLEYN-G----------------KTVNL-KS---IMGVMSLGIPKGATIK 62 (88)
T ss_dssp EEEEBCCTTCSCHHHHHHHHHHHHTSSSEEEEEET-T----------------EEEET-TC---HHHHHHTCCCTTCEEE
T ss_pred EEEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEEC-C----------------EEEeh-Hh---HHHHHhcCCCCCCEEE
Confidence 35666665558899999999999999998876321 1 12332 23 2555554444444566
Q ss_pred EEEccccCCchHHHHHHHHHHH
Q 014155 273 IEIIDKLISVPYVEMTLKLMER 294 (429)
Q Consensus 273 I~~~~~~~s~~~~~~tl~~L~~ 294 (429)
|...+. +....++.+.+++..
T Consensus 63 i~~~G~-De~~A~~~l~~l~~~ 83 (88)
T 1y51_A 63 ITAEGA-DAAEAMAALTDTLAK 83 (88)
T ss_dssp EEEEST-THHHHHHHHHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHh
Confidence 665432 234455666666664
No 27
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=39.26 E-value=90 Score=29.78 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=60.9
Q ss_pred HHHHhcccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCcc--------------ceEEEeCCccccCCcce
Q 014155 259 ALLMAAPLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDSW--------------DRFFIQGGQKYKSPGNA 322 (429)
Q Consensus 259 alllAA~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~~--------------~~i~I~g~~~l~~~~~~ 322 (429)
..+-...+....++|++.+.. ........+++-|+++|++|..++=. +.|+|... +. -
T Consensus 186 ~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~lp~d~iKID~s--fv----~ 259 (340)
T 4hjf_A 186 ETLRVNRLPRGALKLEVTESDIMRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLPFDTLKIDRY--FV----R 259 (340)
T ss_dssp HHHHHTTCCTTSEEEEEEHHHHHTSHHHHHHHHHHHHHHTCEEEEECTTSSSCGGGTGGGSCCSEEEECHH--HH----H
T ss_pred HHHHhhCCCcceEEEEeeccccccchHHHHHHHHHHHHcCCCccccCCCCCcchHHHHHhCCCChhcccHH--hh----h
Confidence 333344455567888876531 23345677889999999999987620 12222210 00 0
Q ss_pred eecCChhhHH---HHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 323 FVEGDASSAS---YFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 323 ~v~~D~s~a~---~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
.+..|..... .++.+|--.+-++..+||.. ..-++.|++||++.-.
T Consensus 260 ~~~~~~~~~~iv~~ii~la~~lg~~vvAEGVEt------~~q~~~L~~lG~d~~Q 308 (340)
T 4hjf_A 260 TMGNNAGSAKIVRSVVKLGQDLDLEVVAEGVEN------AEMAHALQSLGCDYGQ 308 (340)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTCEEEEECCCS------HHHHHHHHHTTCCEEE
T ss_pred cccCCHhHHHHHHHHHHHHHHcCCEEEEEeCCc------HHHHHHHHHcCCCEee
Confidence 1233332222 23344444577899999864 2568899999998654
No 28
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=38.34 E-value=1.2e+02 Score=28.16 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=57.7
Q ss_pred cccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCcc--------------ceEEEeCCccccCCcceeecCC
Q 014155 264 APLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDSW--------------DRFFIQGGQKYKSPGNAFVEGD 327 (429)
Q Consensus 264 A~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~~--------------~~i~I~g~~~l~~~~~~~v~~D 327 (429)
..+....+.|++.+.. .........++.|+++|++|..++=. +.|+|... +. -.+..|
T Consensus 142 ~~~~~~~l~lEItE~~~~~~~~~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~s--fv----~~i~~~ 215 (294)
T 2r6o_A 142 SGLRPDCLELEITENVMLVMTDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQS--FV----RKIPAH 215 (294)
T ss_dssp HCCCGGGEEEEEEGGGGGGCCHHHHHHHHHHHHHTCEEEEEEETSSCBCHHHHHHSCCCEEEECHH--HH----TTTTTS
T ss_pred cCCCcCEEEEEEeCCchhhChHHHHHHHHHHHHCCCEEEEECCCCCchhHHHHHhCCCCEEEECHH--HH----hhhhcC
Confidence 3444567888887542 22345677899999999999887510 12222210 00 012233
Q ss_pred hhhHH---HHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEE
Q 014155 328 ASSAS---YFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT 373 (429)
Q Consensus 328 ~s~a~---~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~ 373 (429)
..... .++.+|--.+-++..+||.. ..-++.|+++|++.-
T Consensus 216 ~~~~~iv~~ii~la~~lg~~vvAEGVEt------~~q~~~l~~lG~d~~ 258 (294)
T 2r6o_A 216 PSETQIVTTILALARGLGMEVVAEGIET------AQQYAFLRDRGCEFG 258 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECCCCS------HHHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEecCCc------HHHHHHHHHcCCCEE
Confidence 32222 23344444577899999864 356888999999764
No 29
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=34.33 E-value=73 Score=30.70 Aligned_cols=109 Identities=23% Similarity=0.286 Sum_probs=55.9
Q ss_pred eCCCCCHHHHHHHHHhcccCCCceEEEEccccCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCccccCCcceeecCC
Q 014155 248 LSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327 (429)
Q Consensus 248 i~gd~Ssq~~salllAA~~~~g~~~I~~~~~~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~~l~~~~~~~v~~D 327 (429)
+.|.++..-++|||+|..+- |+ +..++..+.+.|++.|..+...+....+-+.|- +++-.--..
T Consensus 32 l~G~~~d~QiaAfL~alr~k-ge----------t~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gT-----GGdg~~t~n 95 (346)
T 4hkm_A 32 MRGEVSDAMVSAILTGLRVK-KE----------TIGEIAGAATVMREFSRRVEVTDRRHMVDIVGT-----GGDGSHTFN 95 (346)
T ss_dssp HTTCSCHHHHHHHHHHHHHH-CC----------CHHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC-----------CCC
T ss_pred HCCCCCHHHHHHHHHHHHHH-Cc----------CHHHHHHHHHHHHHhCCCCCCCCCccceeecCC-----CCCCccccC
Confidence 45666666678888875442 22 345677889999999998876543223444431 111000111
Q ss_pred hhhHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEEeC
Q 014155 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376 (429)
Q Consensus 328 ~s~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~~~ 376 (429)
.+.+..+ ++|-.|-++..+|-....-+ .--.|+|+.+|++++.+.
T Consensus 96 iSt~~a~--v~Aa~G~~V~khG~r~~ss~--~GsaD~LeaLG~~~~ls~ 140 (346)
T 4hkm_A 96 ISTCAMF--VAAAGGAKVAKHGNRSVSSK--SGSADALEALGAVIELQP 140 (346)
T ss_dssp HHHHHHH--HHHHTTCEEEEEC-----------CHHHHHTTTCCCCCCH
T ss_pred cHHHHHH--HHHhcCCCeeecCCCCCCCC--cCHHHHHHHcCCCcccCH
Confidence 2222212 23334667777764332222 124678888888887543
No 30
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=33.28 E-value=3.5e+02 Score=26.45 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=59.7
Q ss_pred hcccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCc--------------cceEEEeCCccccCCcceeecC
Q 014155 263 AAPLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDS--------------WDRFFIQGGQKYKSPGNAFVEG 326 (429)
Q Consensus 263 AA~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~--------------~~~i~I~g~~~l~~~~~~~v~~ 326 (429)
...+....+.|++.+.. .........++.|+++|++|..++= .+.|+|... +. -.+..
T Consensus 135 ~~~~~~~~l~lEItE~~~~~~~~~~~~~l~~Lr~~G~~ialDDFG~g~ssl~~L~~l~~d~iKID~s--~v----~~~~~ 208 (431)
T 2bas_A 135 AKGIELHRFVLEITEHNFEGDIEQLYHMLAYYRTYGIKIAVDNIGKESSNLDRIALLSPDLLKIDLQ--AL----KVSQP 208 (431)
T ss_dssp HTTCCGGGEEEEECCTTCCSCHHHHHHHHHHHHTTTCEEEEEEETTTBCCHHHHHHHCCSEEEEECT--TT----C----
T ss_pred HcCCCCCeEEEEEECChhhCCHHHHHHHHHHHHHCCCEEEEECCCCCcHHHHHHHhCCCCEEEECHH--HH----hhhhc
Confidence 33445567889887642 2335567789999999999987641 134445432 11 01222
Q ss_pred ChhhHH---HHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 327 DASSAS---YFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 327 D~s~a~---~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
|..... .++.+|--.+-++..+|+.. ..-++.|+++|++.-.
T Consensus 209 ~~~~~~il~~ii~la~~lg~~vvAEGVEt------~~q~~~l~~lG~d~~Q 253 (431)
T 2bas_A 209 SPSYEHVLYSISLLARKIGAALLYEDIEA------NFQLQYAWRNGGRYFQ 253 (431)
T ss_dssp CCHHHHHHHHHHHHHHHHTCEEEEECCCS------HHHHHHHHHTTEEEEC
T ss_pred CHhHHHHHHHHHHHHHHcCCEEEEEeCCC------HHHHHHHHHcCCCEEe
Confidence 322222 23334444577899999864 2568889999998743
No 31
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=33.23 E-value=1.8e+02 Score=26.19 Aligned_cols=103 Identities=13% Similarity=-0.004 Sum_probs=58.0
Q ss_pred HHHhcccCCCceEEEEccccC--CchHHHHHHHHHHHcCCeEEEcCc--------------cceEEEeCCccccCCccee
Q 014155 260 LLMAAPLALGNVEIEIIDKLI--SVPYVEMTLKLMERFGVFVEHSDS--------------WDRFFIQGGQKYKSPGNAF 323 (429)
Q Consensus 260 lllAA~~~~g~~~I~~~~~~~--s~~~~~~tl~~L~~~G~~i~~~~~--------------~~~i~I~g~~~l~~~~~~~ 323 (429)
++-...+....+.|++.+... ........++.|+++|+++..++= .+.|+|.+. +.. .
T Consensus 128 ~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDfG~g~ssl~~L~~l~~d~iKiD~~--~v~----~ 201 (268)
T 3hv8_A 128 ALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGS--FVQ----D 201 (268)
T ss_dssp HHHHHTCCSSCEEEEEEHHHHHHTHHHHHHHHHHHHHTTCEEEEEEETCSSSTTGGGGTCCCSEEEECGG--GGS----S
T ss_pred HHHHcCCChhhEEEEEEcHHHHhCHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhCCCCEEEECHH--HHH----h
Confidence 333344556778888765321 124456788999999999987641 022333221 000 0
Q ss_pred ecCChh--hHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 324 VEGDAS--SASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 324 v~~D~s--~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
+..|.. ....++.++.-.+..+.++|+.. ..-++.|+++|++.-.
T Consensus 202 ~~~~~~~~~l~~ii~~~~~~~~~viaeGVEt------~~~~~~l~~lG~~~~Q 248 (268)
T 3hv8_A 202 LNQVENQEILKGLIAELHEQQKLSIVPFVES------ASVLATLWQAGATYIQ 248 (268)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCEEEECCCCS------HHHHHHHHHHTCSEEC
T ss_pred hhcChhHHHHHHHHHHHHHcCCCEEEEeeCC------HHHHHHHHHcCCCEec
Confidence 111211 11223344445678899998753 3568889999998643
No 32
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=33.06 E-value=1.6e+02 Score=22.26 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=49.0
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEE
Q 014155 194 SYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEI 273 (429)
Q Consensus 194 ~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I 273 (429)
++++....-|..||...+++..++|..+|+...+ + ..+++ .| +.+++..+..-+..++|
T Consensus 4 ~~~i~n~~GLHARPAa~~v~~a~~f~s~I~i~~~-~----------------~~vda-KS---im~lmsLg~~~G~~i~i 62 (88)
T 1pch_A 4 SAIITDKVGLHARPASVLAKEASKFSSNITIIAN-E----------------KQGNL-KS---IMNVMAMAIKTGTEITI 62 (88)
T ss_dssp EEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEET-T----------------EEEET-TC---HHHHHHHCCCTTCEEEE
T ss_pred EEEECCCCCcCHHHHHHHHHHHhhCCCeEEEEEC-C----------------EEEeh-Hh---HHHHHhcCCCCCCEEEE
Confidence 4566655558899999999999999998876321 1 12332 23 25666555544446777
Q ss_pred EEccccCCchHHHHHHHHHHHcC
Q 014155 274 EIIDKLISVPYVEMTLKLMERFG 296 (429)
Q Consensus 274 ~~~~~~~s~~~~~~tl~~L~~~G 296 (429)
...++ +....++.+.++++.-|
T Consensus 63 ~a~G~-De~~Al~~l~~l~~~~~ 84 (88)
T 1pch_A 63 QADGN-DADQAIQAIKQTMIDTA 84 (88)
T ss_dssp EEEST-THHHHHHHHHHHHHHTT
T ss_pred EEeCC-CHHHHHHHHHHHHHhCC
Confidence 65432 33445556666666544
No 33
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=32.33 E-value=42 Score=22.75 Aligned_cols=24 Identities=38% Similarity=0.792 Sum_probs=18.0
Q ss_pred HHHHHHHcC---CEEEEeCCeEEEeCC
Q 014155 361 FAEVLEKMG---AKVTWTENSVTVTGP 384 (429)
Q Consensus 361 ~~~~L~kMG---a~v~~~~~~i~I~g~ 384 (429)
+++++..+| ++|+|++|.+++.|.
T Consensus 23 likvfaelgyndinvtwdgdtvtvegq 49 (62)
T 2gjh_A 23 LIKVFAELGYNDINVTWDGDTVTVEGQ 49 (62)
T ss_dssp HHHHHHHTTCCSCEEEECSSCEEEEEE
T ss_pred HHHHHHHhCcccceeEEcCCEEEEEeE
Confidence 344555565 689999999999875
No 34
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=27.36 E-value=38 Score=32.75 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCCC
Q 014155 123 SEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPR 202 (429)
Q Consensus 123 ~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~~ 202 (429)
.+.+..+.+++++.|.+++..+....+-+.|.||.-. ..+++- +++|.++++ ...++...|+..
T Consensus 55 ~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTGGdg~--------~t~niS-------t~~a~v~Aa-~G~~V~khG~r~ 118 (346)
T 4hkm_A 55 IGEIAGAATVMREFSRRVEVTDRRHMVDIVGTGGDGS--------HTFNIS-------TCAMFVAAA-GGAKVAKHGNRS 118 (346)
T ss_dssp HHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC--------------CCCHH-------HHHHHHHHH-TTCEEEEEC---
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccceeecCCCCCCc--------cccCcH-------HHHHHHHHh-cCCCeeecCCCC
Confidence 4688889999999999887644323456667664210 112211 344444443 345666667655
Q ss_pred CCCCChHHHHHHHHHcCCEEEE
Q 014155 203 MRERPIGDLVTGLKQLGADVDC 224 (429)
Q Consensus 203 l~~rpi~~l~~~L~~~Ga~V~~ 224 (429)
+.++.- -.|.|+.+|++++.
T Consensus 119 ~ss~~G--saD~LeaLG~~~~l 138 (346)
T 4hkm_A 119 VSSKSG--SADALEALGAVIEL 138 (346)
T ss_dssp --------CHHHHHTTTCCCCC
T ss_pred CCCCcC--HHHHHHHcCCCccc
Confidence 544322 26889999998864
No 35
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=26.23 E-value=1.7e+02 Score=21.84 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=25.9
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHcCCEEEEe
Q 014155 194 SYILDGVPRMRERPIGDLVTGLKQLGADVDCI 225 (429)
Q Consensus 194 ~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~ 225 (429)
++++....-|..||...+++..++|..+|+..
T Consensus 5 ~v~i~n~~GlHARpAa~~v~~a~~f~s~I~i~ 36 (85)
T 3ccd_A 5 EVTITAPNGLDTRPAAQFVKEAKGFTSEITVT 36 (85)
T ss_dssp EEECCSTTCSCHHHHHHHHHHHTTSCSEEEEE
T ss_pred EEEEcCCCCccHHHHHHHHHHHhhCCCeEEEE
Confidence 46666655588999999999999999988753
No 36
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=24.51 E-value=2.4e+02 Score=27.31 Aligned_cols=98 Identities=10% Similarity=-0.029 Sum_probs=57.5
Q ss_pred ccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCc--------------cceEEEeCCccccCCcceeecCCh
Q 014155 265 PLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDS--------------WDRFFIQGGQKYKSPGNAFVEGDA 328 (429)
Q Consensus 265 ~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~--------------~~~i~I~g~~~l~~~~~~~v~~D~ 328 (429)
.+....+.|++.+.. .........++.|+++|++|..++= .+.|+|... +.. .+..|.
T Consensus 302 ~~~~~~l~lEitE~~~~~~~~~~~~~l~~l~~~G~~ialDDfG~g~ssl~~L~~l~~d~iKiD~~--~i~----~~~~~~ 375 (437)
T 3hvb_A 302 RLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGS--FVQ----DLNQVE 375 (437)
T ss_dssp TCCTTCEEEEEEHHHHHHTHHHHHHHHHHHHHTTCEEEEEEETCSSSHHHHHTTSCCSEEEECGG--GSS----CCSSHH
T ss_pred CCChhhEEEEEEchhhhhCHHHHHHHHHHHHHCCCEEEEcCCCCCccHHHHHhhCCCCEEEECHH--HHH----hHhhCc
Confidence 344567888876532 1224456788999999999987651 023444321 110 112221
Q ss_pred h--hHHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 329 S--SASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 329 s--~a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
. ....++.++.-.+..+.++|+.. ..-++.|+++|++.-.
T Consensus 376 ~~~~~~~~i~~~~~~~~~viaegVEt------~~~~~~l~~~G~~~~Q 417 (437)
T 3hvb_A 376 NQEILKGLIAELHEQQKLSIVPFVES------ASVLATLWQAGATYIQ 417 (437)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCS------HHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEeeeeCC------HHHHHHHHHcCCCEec
Confidence 1 12223444555688899998753 3568899999998754
No 37
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=24.19 E-value=2.9e+02 Score=26.67 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=57.2
Q ss_pred ccCCCceEEEEccccCC-chHHHHHHHHHHHcCCeEEEcCc--------------cceEEEeCCccccCCcceeecCChh
Q 014155 265 PLALGNVEIEIIDKLIS-VPYVEMTLKLMERFGVFVEHSDS--------------WDRFFIQGGQKYKSPGNAFVEGDAS 329 (429)
Q Consensus 265 ~~~~g~~~I~~~~~~~s-~~~~~~tl~~L~~~G~~i~~~~~--------------~~~i~I~g~~~l~~~~~~~v~~D~s 329 (429)
.+....+.|++.+.... .......++-|+++|++|..++= .+.|+|.+. +. -.+..|..
T Consensus 304 ~~~~~~l~lEitE~~~~~~~~~~~~~~~l~~~G~~ialDdfG~g~ssl~~L~~l~~d~iKiD~~--~v----~~~~~~~~ 377 (430)
T 3pjx_A 304 SNLGARLTLEIGEEQLPEQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGS--YI----RAIDQESD 377 (430)
T ss_dssp GGGGGGEEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEEEECCCHHHHCTHHHHCCSCEEECGG--GT----TTTTTCHH
T ss_pred CCCCceEEEEEECccccccHHHHHHHHHHHHCCCEEEEeCCCCCchhHHHHHhCCCCEEEECHH--HH----HhHhcChh
Confidence 34445788888654222 23455677889999999998651 023444321 11 01223332
Q ss_pred hHH---HHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 330 SAS---YFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 330 ~a~---~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
... .++.+|--.+-++..+|+.. ..-++.|+++|++.-.
T Consensus 378 ~~~~~~~i~~~a~~l~~~viaeGVEt------~~~~~~l~~~g~~~~Q 419 (430)
T 3pjx_A 378 KRLFIEAIQRAAHSIDLPLIAERVET------EGELSVIREMGLYGVQ 419 (430)
T ss_dssp HHHHHHHHHHHHHTTTCCEEECCCCC------HHHHHHHHHTTCSEEE
T ss_pred hHHHHHHHHHHHHHCCCcEEEEecCC------HHHHHHHHHcCCCeec
Confidence 222 23334444566899999853 3568899999998754
No 38
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=23.61 E-value=2.3e+02 Score=21.17 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEE
Q 014155 194 SYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEI 273 (429)
Q Consensus 194 ~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I 273 (429)
++++....-|..||...+++..++|..+|+...+ + ..+++ .| +-+++..+..-+..++|
T Consensus 5 ~v~i~~~~GLHARpAa~~v~~a~~f~s~I~i~~~-~----------------~~vna-KS---im~lm~Lg~~~G~~i~i 63 (88)
T 1ka5_A 5 SYVIIDETGIHARPATMLVQTASKFDSDIQLEYN-G----------------KKVNL-KS---IMGVMSLGVGKDAEITI 63 (88)
T ss_dssp EEEBCCTTCSCHHHHHHHHHHHHHHSSEEEEEET-T----------------EEEET-TC---HHHHHTTTCCTTCEEEE
T ss_pred EEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEEC-C----------------EEEeh-Hh---HHHHHhcCCCCCCEEEE
Confidence 4666665558899999999999999999876321 1 12332 23 24555444433344666
Q ss_pred EEccccCCchHHHHHHHHHHH
Q 014155 274 EIIDKLISVPYVEMTLKLMER 294 (429)
Q Consensus 274 ~~~~~~~s~~~~~~tl~~L~~ 294 (429)
...++ +....++.+.++++.
T Consensus 64 ~a~G~-De~~A~~~l~~l~~~ 83 (88)
T 1ka5_A 64 YADGS-DESDAIQAISDVLSK 83 (88)
T ss_dssp EEESS-SHHHHHHHHHHHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHH
Confidence 65432 234455556666653
No 39
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=22.99 E-value=1.1e+02 Score=29.23 Aligned_cols=84 Identities=23% Similarity=0.213 Sum_probs=53.1
Q ss_pred CchhHHHHHHHHHHcCCEEEEcCCceeEEEEeCCCCcCCccCCCCceEEEecCchhhhHHHHHHHHHcCCCeEEEEcCCC
Q 014155 122 SSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201 (429)
Q Consensus 122 ~~~dv~~ll~aL~~lGa~v~~~~~~~~l~i~g~gg~~~~~~~~~~~~~i~~g~sgts~r~L~a~l~a~~~~~~~~l~g~~ 201 (429)
..+.+..+.+++++.+..+.+..+ ..+-+.|.||+-. ..+++- .++|.++++ ...++...|+.
T Consensus 48 t~~Eiag~~~am~~~~~~~~~~~~-~~vD~~gTGGdg~--------~tfNiS-------t~~a~v~Aa-~Gv~V~kHGnr 110 (329)
T 2elc_A 48 RPHEIAAMARAMREAARPLRVHRR-PLLDIVGTGGDGK--------GLMNLS-------TLAALVAAA-GGVAVAKHGNR 110 (329)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCCCS-SEEEEEECCCCSS--------CCCCCH-------HHHHHHHHH-TTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCC-CeeEEcCCCCCCC--------CccccH-------HHHHHHHHh-CCCCEEEeCCC
Confidence 457888999999999988765422 3566777765311 123321 344444443 34567777776
Q ss_pred CCCCCChHHHHHHHHHcCCEEEE
Q 014155 202 RMRERPIGDLVTGLKQLGADVDC 224 (429)
Q Consensus 202 ~l~~rpi~~l~~~L~~~Ga~V~~ 224 (429)
.+.++.- ..|.|+.+|++++.
T Consensus 111 ~~ss~~G--saDvLeaLG~~~~~ 131 (329)
T 2elc_A 111 AASSRAG--SADLLEALGVDLEA 131 (329)
T ss_dssp CTTTTCS--HHHHHHHTTCCTTC
T ss_pred CCCCccc--HHHHHHhCCCCCCC
Confidence 6666443 47899999998753
No 40
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=22.57 E-value=2.2e+02 Score=25.39 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=59.0
Q ss_pred HHHHHhcccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCcc--------------ceEEEeCCccccCCcc
Q 014155 258 TALLMAAPLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDSW--------------DRFFIQGGQKYKSPGN 321 (429)
Q Consensus 258 salllAA~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~~--------------~~i~I~g~~~l~~~~~ 321 (429)
..++-...+....+.|++.+.. .........++.|+++|+++..++=. +.|+|... +.
T Consensus 112 ~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~~d~iKiD~~--~v---- 185 (259)
T 3s83_A 112 AETLRVNRLPRGALKLEVTESDIMRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLPFDTLKIDRY--FV---- 185 (259)
T ss_dssp HHHHHHTTCCTTSEEEEEEHHHHHHCHHHHHHHHHHHHHHTCEEEEECC---CHHHHHHHHSCCCEEEECHH--HH----
T ss_pred HHHHHHcCCCcceEEEEECCchhhhCHHHHHHHHHHHHHCCCEEEEECCCCCchhHHHHHhCCCCEEEECHH--HH----
Confidence 3344444455677888876432 12344567889999999999987510 12222110 00
Q ss_pred eeecCChhhHH---HHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 322 AFVEGDASSAS---YFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 322 ~~v~~D~s~a~---~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
-.+..|..... .+..+|--.+-++..+|+.. ..-++.|+++|++.-.
T Consensus 186 ~~~~~~~~~~~~~~~i~~~a~~~g~~viaeGVEt------~~~~~~l~~lG~~~~Q 235 (259)
T 3s83_A 186 RTMGNNAGSAKIVRSVVKLGQDLDLEVVAEGVEN------AEMAHALQSLGCDYGQ 235 (259)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHTTCEEEECCCCS------HHHHHHHHHHTCCEEC
T ss_pred hhhhcCchHHHHHHHHHHHHHHCCCeEEEEeCCC------HHHHHHHHhcCCCEee
Confidence 01122322211 23334444577899999863 2468889999998643
No 41
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=22.41 E-value=2.3e+02 Score=27.15 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=59.5
Q ss_pred HHHHHHhcccCCCceEEEEccc--cCCchHHHHHHHHHHHcCCeEEEcCccceEEEeCCc---cccC-Ccc-eeec----
Q 014155 257 LTALLMAAPLALGNVEIEIIDK--LISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ---KYKS-PGN-AFVE---- 325 (429)
Q Consensus 257 ~salllAA~~~~g~~~I~~~~~--~~s~~~~~~tl~~L~~~G~~i~~~~~~~~i~I~g~~---~l~~-~~~-~~v~---- 325 (429)
+..++-...+....+.|++.+. ..........++-|+++|+++..++=. + |-. .+.. +.+ +.+.
T Consensus 248 l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~l~~~G~~ialDDfG-~----g~ssl~~L~~l~~d~iKiD~~~v 322 (400)
T 3sy8_A 248 ISALLTEFHLPPSSVMFEITETGLISAPASSLENLVRLWIMGCGLAMDDFG-A----GYSSLDRLCEFPFSQIKLDRTFV 322 (400)
T ss_dssp HHHHHHHTTCCGGGEEEEEEHHHHHTCCHHHHHHHHHHHHHTCEEEEEEEC-S----CSGGGGSSSSCCCSEEEECTHHH
T ss_pred HHHHHHHcCCChHHeEEEecCCchhcCHHHHHHHHHHHHHCCCEEEEECCC-C----chhhHHHHHhCCCCEEEECHHHH
Confidence 3444444445556788887653 122345567889999999999876510 0 000 0000 111 1222
Q ss_pred ----CChhh---HHHHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEEE
Q 014155 326 ----GDASS---ASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374 (429)
Q Consensus 326 ----~D~s~---a~~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~~ 374 (429)
.|... ...++.+|--.+-++..+|+.. ..-++.|+++|++.-.
T Consensus 323 ~~~~~~~~~~~~v~~i~~~a~~l~~~vvaEGVEt------~~~~~~l~~~g~~~~Q 372 (400)
T 3sy8_A 323 QKMKTQPRSCAVISSVVALAQALGISLVVEGVES------DEQRVRLIELGCSIAQ 372 (400)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHTCEEEECCCCC------HHHHHHHHHHTCCEEC
T ss_pred hhhhcChhHHHHHHHHHHHHHHcCCeEEEecCCc------HHHHHHHHHcCCCEEE
Confidence 12111 1223344445577899999864 2567889999998743
No 42
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=22.09 E-value=1.9e+02 Score=25.63 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=55.6
Q ss_pred cccCCCceEEEEcccc--CCchHHHHHHHHHHHcCCeEEEcCcc--------------ceEEEeCCccccCCcceeecCC
Q 014155 264 APLALGNVEIEIIDKL--ISVPYVEMTLKLMERFGVFVEHSDSW--------------DRFFIQGGQKYKSPGNAFVEGD 327 (429)
Q Consensus 264 A~~~~g~~~I~~~~~~--~s~~~~~~tl~~L~~~G~~i~~~~~~--------------~~i~I~g~~~l~~~~~~~v~~D 327 (429)
..+....+.|++.+.. .........++.|+++|+++..++=. +.|+|.+. +. -.+..|
T Consensus 122 ~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDdfG~g~s~l~~L~~l~~d~iKiD~~--~v----~~~~~~ 195 (250)
T 4f3h_A 122 YGVPGERLWLQTPESKVFTHLRNAQQFLASVSAMGCKVGLEQFGSGLDSFQLLAHFQPAFLKLDRS--IT----GDIASA 195 (250)
T ss_dssp TTCCGGGEEEEEEHHHHHHSHHHHHHHHHHHHTTTCEEEEEEETSSTHHHHHHTTSCCSEEEECHH--HH----TTTTTC
T ss_pred cCCCcceEEEEEechhhhcCHHHHHHHHHHHHHCCCEEEEeCCCCCchHHHHHhhCCCCEEEECHH--HH----HhHhcC
Confidence 3444567888876542 12234567889999999999877510 12222210 00 011222
Q ss_pred hhhHH---HHHHHHHccCCEEEEEccCCCCccchHHHHHHHHHcCCEEE
Q 014155 328 ASSAS---YFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT 373 (429)
Q Consensus 328 ~s~a~---~~lalAa~~~g~v~i~g~~~~~~q~D~~~~~~L~kMGa~v~ 373 (429)
..... .++.+|--.+-++..+|+.. ..-++.|+++|++.-
T Consensus 196 ~~~~~~l~~i~~~a~~l~~~viaeGVEt------~~~~~~l~~~G~~~~ 238 (250)
T 4f3h_A 196 RESQEKIREITSRAQPTGILTVAEFVAD------AQSMSSFFTAGVDYV 238 (250)
T ss_dssp SHHHHHHHHTHHHHHHHTCEEEECCCCC------HHHHHHHHHHTCSEE
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEeccCC------HHHHHHHHHcCCCEE
Confidence 22212 23334444577899999853 246788999999864
No 43
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=21.80 E-value=2.5e+02 Score=20.93 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=47.0
Q ss_pred eEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceE
Q 014155 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVE 272 (429)
Q Consensus 193 ~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~ 272 (429)
.++++....-|..||...+++..++|..+|+...+ + .++++ .| +-+++..+..-+..++
T Consensus 4 ~~v~i~~~~GLHARpAa~~v~~a~~f~s~I~i~~~-~----------------~~vna-KS---im~lm~L~~~~g~~i~ 62 (88)
T 1sph_A 4 KTFKVTADSGIHARPATVLVQTASKYDADVNLEYN-G----------------KTVNL-KD---IMGVMSLGIAKGAEIT 62 (88)
T ss_dssp EEEEBCCTTCSCHHHHHHHHHHHTTSSSEEEEEET-T----------------EEEET-TC---HHHHHHHCCCTTCEEE
T ss_pred EEEEEcCCCCccHHHHHHHHHHHhhCCCeEEEEEC-C----------------EEEeh-Hh---HHHHHhcCCCCCCEEE
Confidence 35666665558899999999999999998876321 1 12332 23 2556655444444566
Q ss_pred EEEccccCCchHHHHHHHHHH
Q 014155 273 IEIIDKLISVPYVEMTLKLME 293 (429)
Q Consensus 273 I~~~~~~~s~~~~~~tl~~L~ 293 (429)
|...++ +....++.+.+++.
T Consensus 63 i~~~G~-De~~A~~~l~~l~~ 82 (88)
T 1sph_A 63 ISASGA-DENDALNALEETMK 82 (88)
T ss_dssp EEEEST-THHHHHHHHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHH
Confidence 665432 23344555555555
No 44
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=20.10 E-value=2.8e+02 Score=20.73 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=46.0
Q ss_pred EEEEcCCCCCCCCChHHHHHHHHHcCCEEEEeCCCCcCcEEEecCCCCCCeeEEeCCCCCHHHHHHHHHhcccCCCceEE
Q 014155 194 SYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEI 273 (429)
Q Consensus 194 ~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~~~~~~~pv~I~g~~~l~~~~~~i~gd~Ssq~~salllAA~~~~g~~~I 273 (429)
++++....-|..||...+++..++|..+|+...+ + ..+++ .| +-+++..+..-+..++|
T Consensus 5 ~v~i~~~~GLHARpAa~~v~~a~~f~s~I~i~~~-~----------------~~vna-KS---im~lm~L~~~~g~~i~i 63 (88)
T 1ptf_A 5 EFHIVAETGIHARPATLLVQTASKFNSDINLEYK-G----------------KSVNL-KS---IMGVMSLGVGQGSDVTI 63 (88)
T ss_dssp EEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEET-T----------------EEEET-TC---HHHHHHHCCCTTCEEEE
T ss_pred EEEECCCCCcCHHHHHHHHHHHhhCCCeEEEEEC-C----------------EEEeh-Hh---HHHHHhcCCCCCCEEEE
Confidence 4566554458889999999999999998875321 1 12332 23 25555544444445666
Q ss_pred EEccccCCchHHHHHHHHHH
Q 014155 274 EIIDKLISVPYVEMTLKLME 293 (429)
Q Consensus 274 ~~~~~~~s~~~~~~tl~~L~ 293 (429)
...+. +....++.+.++++
T Consensus 64 ~~~G~-De~~A~~~l~~l~~ 82 (88)
T 1ptf_A 64 TVDGA-DEAEGMAAIVETLQ 82 (88)
T ss_dssp EEEST-THHHHHHHHHHHHH
T ss_pred EEeCC-CHHHHHHHHHHHHH
Confidence 65432 23444555555555
No 45
>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand, IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A* 1k1c_A
Probab=20.07 E-value=3.2e+02 Score=21.42 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCCCCChHHHHHHHHHcCCEEEEe
Q 014155 193 LSYILDGVPRMRERPIGDLVTGLKQLGADVDCI 225 (429)
Q Consensus 193 ~~~~l~g~~~l~~rpi~~l~~~L~~~Ga~V~~~ 225 (429)
.++++....-|..||...+++..++|..+|+..
T Consensus 28 ~~v~I~n~~GLHARPAa~~V~~A~~f~s~I~i~ 60 (106)
T 3ihs_A 28 KRVQVSLKNGLQARPAALFVQEANRFHADIFIE 60 (106)
T ss_dssp EEEECCCTTCSCHHHHHHHHHHHHTSSSEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHhhCCCeEEEE
Confidence 456666555578899999999999999988753
Done!