RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014155
(429 letters)
>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase.
Length = 443
Score = 695 bits (1796), Expect = 0.0
Identities = 301/350 (86%), Positives = 323/350 (92%)
Query: 77 ASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKL 136
A EI LQPI+EISGTV LPGSKSLSNRILLLAALSEGTTVVDNLL S+DI +ML ALK L
Sbjct: 1 AEEITLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTL 60
Query: 137 GLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
GLNVEED RA+VEGCGG FP++ ++ELFLGNAGTAMRPLTAAVTAAGGN SY+
Sbjct: 61 GLNVEEDSENNRAVVEGCGGKFPVSGDSKEDVELFLGNAGTAMRPLTAAVTAAGGNASYV 120
Query: 197 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
LDGVPRMRERPIGDLV GLKQLGADV+C LGTNCPPVR+N GGLPGGKVKLSG +SSQY
Sbjct: 121 LDGVPRMRERPIGDLVDGLKQLGADVECTLGTNCPPVRVNAAGGLPGGKVKLSGSISSQY 180
Query: 257 LTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKY 316
LTALLMAAPLALG+VEIEI+DKLISVPYVEMTLKLMERFGV VEHSDSWDRFFI+GGQKY
Sbjct: 181 LTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSDSWDRFFIKGGQKY 240
Query: 317 KSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTE 376
KSPGNA+VEGDASSASYF+AGAA+TGGTVTVEGCGT+SLQGDVKFAEVLEKMGAKV WTE
Sbjct: 241 KSPGNAYVEGDASSASYFLAGAAITGGTVTVEGCGTTSLQGDVKFAEVLEKMGAKVEWTE 300
Query: 377 NSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
NSVTVTGPPRD +G KHL+A+DVNMNKMPDVAMTLAVVALFADGPTAIRD
Sbjct: 301 NSVTVTGPPRDAFGGKHLKAIDVNMNKMPDVAMTLAVVALFADGPTAIRD 350
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 399 bits (1027), Expect = e-134
Identities = 178/347 (51%), Positives = 229/347 (65%), Gaps = 18/347 (5%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
L P+ GTV LPGSKS+SNR+LLLAALSEGTT V +LL S+D MLDAL+ LG VE
Sbjct: 9 LPPLLSAGGTVRLPGSKSISNRVLLLAALSEGTTTVRDLLDSDDTRVMLDALRALGCGVE 68
Query: 142 EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
+ R + G GG FP+ + +LFLGNAGTAMRPLTAA+ GG Y L GVP
Sbjct: 69 QLGDTYR--ITGLGGQFPVKQ-----ADLFLGNAGTAMRPLTAALALLGG--EYELSGVP 119
Query: 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALL 261
RM ERPIGDLV L+QLG D+D + PP+RI +++ G +SSQ+LTALL
Sbjct: 120 RMHERPIGDLVDALRQLGCDIDYLGNEGFPPLRIGPAPLRLDAPIRVRGDVSSQFLTALL 179
Query: 262 MAAPLALG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPG 320
MA PL ++ IE++ +LIS PY+E+TL L+ RFG+ V+ + W RF I G +Y+SPG
Sbjct: 180 MALPLVARRDITIEVVGELISKPYIEITLNLLARFGIAVQR-EGWQRFTIPAGSRYRSPG 238
Query: 321 NAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
VEGDASSASYF+A A+ GG V +EG G S+QGD++FAE MGA+VT N +
Sbjct: 239 EIHVEGDASSASYFIAAGAIAGGAPVRIEGVGRDSIQGDIRFAEAARAMGAQVTSGPNWL 298
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
V R L+A+D++ N +PD AMTLAV+AL+ADG T +R+
Sbjct: 299 EV----RRGAWP--LKAIDLDCNHIPDAAMTLAVMALYADGTTTLRN 339
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 380 bits (979), Expect = e-129
Identities = 142/353 (40%), Positives = 209/353 (59%), Gaps = 20/353 (5%)
Query: 79 EIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGL 138
+++ P +SGTV +PGSKS+S+R LLLAAL+EG T + NLL SED L+AL+ LG+
Sbjct: 4 MLLIIPPSPLSGTVRVPGSKSISHRALLLAALAEGETTITNLLRSEDTLATLNALRALGV 63
Query: 139 NVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+E+D +VEG GG + L GN+GT MR LT + G +L
Sbjct: 64 EIEDD----EVVVEGVGGGGLKEPEDV----LDCGNSGTTMRLLTGLLALQPGE--VVLT 113
Query: 199 GVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLT 258
G +R+RP+G L+ L+Q+GA ++ P+ I +GG GG ++ G +SSQ++
Sbjct: 114 GDESLRKRPMGRLLDPLRQMGAKIEGR-DEGYLPLTI--RGGKKGGPIEYDGPVSSQFVK 170
Query: 259 ALLMAAPL-ALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD--RFFIQGGQK 315
+LL+ APL A G+ E +I+ L S P+ E+TL+++ FGV VE+ + W R I+GGQ+
Sbjct: 171 SLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQR 230
Query: 316 YKSPGNAFVEGDASSASYFVAGAAVTGG-TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW 374
+ + V GD SSA++F+A AA+TGG VT+ G +S QG +VLEKMGA +
Sbjct: 231 LR-GQDITVPGDPSSAAFFLAAAAITGGSEVTITNVGLNSTQGGKAIIDVLEKMGADIEI 289
Query: 375 TENSVTVTGPPRDPYGRK-HLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
EN P D R L+ +D+++ + D A TLAV+A FA+G T IR+
Sbjct: 290 -ENEREGGEPVGDIRVRSSELKGIDIDIPDIIDEAPTLAVLAAFAEGTTVIRN 341
Score = 53.2 bits (129), Expect = 1e-07
Identities = 88/379 (23%), Positives = 138/379 (36%), Gaps = 99/379 (26%)
Query: 89 SGTVTLPGSKSLSNRILL-LAALSEGTTVV--DNLLSSEDIHHMLDALKKLGLNVEEDFA 145
SGT R+L L AL G V+ D L + +LD L+++G +E
Sbjct: 92 SGTTM---------RLLTGLLALQPGEVVLTGDESLRKRPMGRLLDPLRQMGAKIEG--- 139
Query: 146 MKRAIVEGCGGLFPLA---KQQTGEIEL-------FLGNAGTAMRPLTAAVTAAGGNLSY 195
G L PL ++ G IE F+ ++ L A + A G +
Sbjct: 140 ------RDEGYL-PLTIRGGKKGGPIEYDGPVSSQFV----KSLL-LLAPLFAEGDTETT 187
Query: 196 ILDGVPRMRERP-IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
+ + + RP + L+ G +V+ + G + I G L G + + G SS
Sbjct: 188 V---IEPLPSRPHTEITLRMLRAFGVEVENVEGWGYRRIVIKGGQRLRGQDITVPGDPSS 244
Query: 255 QYLTALLMAAPLALGNVEIEI---------IDKLISVPYVEMTLKLMERFGVFVEHSDSW 305
A +AA G E+ I K I + ++E+ G +E +
Sbjct: 245 ---AAFFLAAAAITGGSEVTITNVGLNSTQGGKAI--------IDVLEKMGADIEIENER 293
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSA-----SYFVAGAAVTGGTVTVEGCGTSSLQGDVK 360
+ G + +S ++ D + V AA GT + L+ VK
Sbjct: 294 EGGEPVGDIRVRSSELKGIDIDIPDIIDEAPTLAVL-AAFAEGTTVIRNAE--ELR--VK 348
Query: 361 -------FAEVLEKMGAKVTWTENSVTVTGPPR----DPYG--RKHLRAVDVNMNKMPDV 407
A L K+GA+V TE+ + +TG P D YG R +
Sbjct: 349 ETDRIAAMATELRKLGAEVEETEDGLIITGGPLAGVVDSYGDHR---------------I 393
Query: 408 AMTLAVVALFADGPTAIRD 426
AM A+ L A+GP I D
Sbjct: 394 AMAFAIAGLAAEGPVTIDD 412
>gnl|CDD|238797 cd01556, EPSP_synthase, EPSP synthase domain. 3-phosphoshikimate
1-carboxyvinyltransferase
(5-enolpyruvylshikimate-3-phosphate synthase) (EC
2.5.1.19) catalyses the reaction between
shikimate-3-phosphate (S3P) and phosphoenolpyruvate
(PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP),
an intermediate in the shikimate pathway leading to
aromatic amino acid biosynthesis. The reaction is
phosphoenolpyruvate + 3-phosphoshikimate = phosphate +
5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in
bacteria and plants but not animals. The enzyme is the
target of the widely used herbicide glyphosate, which
has been shown to occupy the active site. In bacteria
and plants, it is a single domain protein, while in
fungi, the domain is found as part of a multidomain
protein with functions that are all part of the
shikimate pathway.
Length = 409
Score = 374 bits (964), Expect = e-128
Identities = 144/340 (42%), Positives = 209/340 (61%), Gaps = 24/340 (7%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SG +T+PGSKS+S+R LLLAAL+EG + ++NLL S+D L+AL+ LG +EE+
Sbjct: 1 LSGEITVPGSKSISHRALLLAALAEGESRIENLLDSDDTLATLEALRALGAKIEEE--GG 58
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
+ G GGL E L GN+GT MR LT + GG+ +L G +R+RP
Sbjct: 59 TVEIVGGGGLGLPP-----EAVLDCGNSGTTMRLLTGLLALQGGD--SVLTGDESLRKRP 111
Query: 208 IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLA 267
+G LV L+QLGA+++ G PP + G GGL GG+V++ G +SSQ+ +ALL+AAPLA
Sbjct: 112 MGRLVDALRQLGAEIEGREGGGYPP--LIGGGGLKGGEVEIPGAVSSQFKSALLLAAPLA 169
Query: 268 LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327
G I I +L S PY++ T +++ FG VE + ++GGQKYK P VEGD
Sbjct: 170 EGPTTIIIG-ELESKPYIDHTERMLRAFGAEVEVDG-YRTITVKGGQKYKGP-EYTVEGD 226
Query: 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT-ENSVTVTGPPR 386
ASSA++F+A AA+TG + ++ G +S GD +VL++MGA + E++V V
Sbjct: 227 ASSAAFFLAAAAITGSEIVIKNVGLNS--GDTGIIDVLKEMGADIEIGNEDTVVVESGG- 283
Query: 387 DPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
L+ +D++ N +PD A TLAV+A FA+GPT IR+
Sbjct: 284 ------KLKGIDIDGNDIPDEAPTLAVLAAFAEGPTRIRN 317
Score = 47.6 bits (114), Expect = 8e-06
Identities = 84/368 (22%), Positives = 135/368 (36%), Gaps = 87/368 (23%)
Query: 89 SGTVTLPGSKSLSNRILL-LAALSEGTTVV--DNLLSSEDIHHMLDALKKLGLNVEEDFA 145
SGT R+L L AL G +V+ D L + ++DAL++LG +E
Sbjct: 81 SGTTM---------RLLTGLLALQGGDSVLTGDESLRKRPMGRLVDALRQLGAEIEGREG 131
Query: 146 MKRAIVEGCGGLFPLAKQQTGEIELFLGNA----GTAMRPLTAAVTAAGGNLSYILDGVP 201
+ G GGL + GE+E+ G +A+ L AA A G I +
Sbjct: 132 GGYPPLIGGGGL------KGGEVEIP-GAVSSQFKSAL--LLAAPLAEGPTTIIIGELES 182
Query: 202 R----MRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYL 257
+ ER L+ GA+V+ + + G G + + G SS
Sbjct: 183 KPYIDHTER-------MLRAFGAEVEVDGYRT---ITVKGGQKYKGPEYTVEGDASS--A 230
Query: 258 TALLMAAPLALGNVEIEII-----DKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312
L AA + + I+ + D I + +++ G +E + ++
Sbjct: 231 AFFLAAAAITGSEIVIKNVGLNSGDTGI--------IDVLKEMGADIEIGNEDTVV-VES 281
Query: 313 GQKYKSPGNAFVEGDASSA-----SYFVAGAAVTGGTVTVEGCGTSSLQGDVK------- 360
G K K ++ D + + V A G T + L+ VK
Sbjct: 282 GGKLKG-----IDIDGNDIPDEAPTLAVLAAFAEGPTRIR---NAAELR--VKESDRIAA 331
Query: 361 FAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAVVALFA 418
A L K+GA V TE+ + + G P V+V D +AM+ A+ L A
Sbjct: 332 MATELRKLGADVEETEDGLIIEGGP------LKGAGVEVY--TYGDHRIAMSFAIAGLVA 383
Query: 419 DGPTAIRD 426
+G I D
Sbjct: 384 EGGVTIED 391
Score = 36.8 bits (86), Expect = 0.021
Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 29/162 (17%)
Query: 73 KQSKASEIVLQPIREISGT-VTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLD 131
+ I ++ ++ G T+ G S + L AA++ V+ N+ + ++D
Sbjct: 201 EVDGYRTITVKGGQKYKGPEYTVEGDASSAAFFLAAAAITGSEIVIKNVGLNSGDTGIID 260
Query: 132 ALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGG 191
LK++G ++E +VE G L + + T AV AA
Sbjct: 261 VLKEMGADIEIG-NEDTVVVESGGKLKGIDIDGNDIPDEAP----------TLAVLAA-- 307
Query: 192 NLSYILDGVPRMR----------ERPIGDLVTGLKQLGADVD 223
+G R+R +R I + T L++LGADV+
Sbjct: 308 ----FAEGPTRIRNAAELRVKESDR-IAAMATELRKLGADVE 344
>gnl|CDD|233373 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase.
This model represents
3-phosphoshikimate-1-carboxyvinyltransferase (aroA),
which catalyzes the sixth of seven steps in the
shikimate pathway of the biosynthesis of chorimate.
Chorismate is last common precursor of all three
aromatic amino acids. Sequences scoring between the
trusted and noise cutoffs include fragmentary and
aberrant sequences in which generally well-conserved
motifs are missing or altererd, but no example of a
protein known to have a different function [Amino acid
biosynthesis, Aromatic amino acid family].
Length = 409
Score = 371 bits (954), Expect = e-126
Identities = 150/338 (44%), Positives = 200/338 (59%), Gaps = 24/338 (7%)
Query: 90 GTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRA 149
G + PGSKS+++R L+LAAL+EG T V NLL SED LDAL+ LG +E+ + A
Sbjct: 1 GEIRAPGSKSITHRALILAALAEGETRVRNLLRSEDTLATLDALRALGAKIEDG--GEVA 58
Query: 150 IVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIG 209
++EG GG P + EL LGN+GT R LT + A G +L G +R+RP+G
Sbjct: 59 VIEGVGGKEP-------QAELDLGNSGTTARLLTGVLALADGE--VVLTGDESLRKRPMG 109
Query: 210 DLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALG 269
LV L+QLGA++ + G P+ I G LPGG V +SG SSQY +ALL+AAP AL
Sbjct: 110 RLVDALRQLGAEISSLEGGGSLPLTI--SGPLPGGIVYISGSASSQYKSALLLAAP-ALQ 166
Query: 270 NVEIEI-IDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDA 328
V I I + L S PY+E+TL L+ FGV VE SD + + GGQKY G V GD
Sbjct: 167 AVGITIVGEPLKSRPYIEITLDLLGSFGVEVERSDG-RKIVVPGGQKYGPQG-YDVPGDY 224
Query: 329 SSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDP 388
SSA++F+A AA+TGG VT+E G + QGD VLE+MGA + E+ + V G
Sbjct: 225 SSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEEDDLIVEGASG-- 282
Query: 389 YGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
L+ + ++M+ M D TLAV+A FA+G T I
Sbjct: 283 -----LKGIKIDMDDMIDELPTLAVLAAFAEGVTRITG 315
Score = 38.8 bits (91), Expect = 0.005
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGP 421
AE L K+G V E+ + + G+K L+ V+ +AM AV L A+G
Sbjct: 331 AEELRKLGVDVEEFEDGLYI-------RGKKELKGAVVDTFGDHRIAMAFAVAGLVAEGE 383
Query: 422 TAIRD 426
I D
Sbjct: 384 VLIDD 388
Score = 33.8 bits (78), Expect = 0.18
Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 45/176 (25%)
Query: 89 SGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSE---DIHHMLDALKKLGLNVEEDFA 145
+PG S + L AA++ G ++NL + D ++ L+++G ++E
Sbjct: 215 PQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDK-AIIIVLEEMGADIE--VE 271
Query: 146 MKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMR- 204
IVEG GL + I+ T AV AA +GV R+
Sbjct: 272 EDDLIVEGASGLKGIKIDMDDMIDEL----------PTLAVLAA------FAEGVTRITG 315
Query: 205 ---------ERPIGDLVTGLKQLGADV----DCILGTNCPPVRINGKGGLPGGKVK 247
+R I + L++LG DV D + I GK L G V
Sbjct: 316 AEELRVKESDR-IAAIAEELRKLGVDVEEFEDGLY--------IRGKKELKGAVVD 362
>gnl|CDD|215834 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate
1-carboxyvinyltransferase).
Length = 415
Score = 354 bits (910), Expect = e-119
Identities = 153/347 (44%), Positives = 203/347 (58%), Gaps = 22/347 (6%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
+ ++G V +PGSKS S+R LLLAAL+ G + + NLL S+D ML+AL+ LG V
Sbjct: 1 VTGGSRLNGEVKVPGSKSNSHRALLLAALAAGESTITNLLDSDDTRLMLEALRALGAEVI 60
Query: 142 EDFAMK-RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 200
E K IVEG GG F E+ L LGN+GTAMRPL A + +L G
Sbjct: 61 ELDEEKTVVIVEGLGGSFEAPY----ELVLDLGNSGTAMRPLLGR--LALQSGEVVLTGD 114
Query: 201 PRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTAL 260
+ ERPI L+ GL+QLGA+++ G P+++ G L G V + G +SSQ++T+L
Sbjct: 115 DSIGERPIDRLLDGLRQLGAEIEYREGYGYAPLKVRG---LKLGGVHIDGSISSQFVTSL 171
Query: 261 LMAAP-LALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
LM A LA G IE L S PY++ T ++ +FG +E S + +I+GGQK
Sbjct: 172 LMLAALLAEGTTIIE---NLASEPYIDDTENMLNKFGAKIEGSGTETSIYIKGGQKLPG- 227
Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
VEGD SSA+YF+A AA+TGGTV VE G +SLQGD E+LEKMGA++T E+S
Sbjct: 228 VEYRVEGDRSSAAYFLAAAAITGGTVKVENVGINSLQGDRAADEILEKMGAEITQGEDSD 287
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
V GPP LR +DV+MN PD A T AV A FA+G + I
Sbjct: 288 IVVGPP-------GLRGIDVDMNTAPDPAPTTAVQAAFAEGTSRIEG 327
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism].
Length = 428
Score = 337 bits (866), Expect = e-112
Identities = 137/352 (38%), Positives = 198/352 (56%), Gaps = 21/352 (5%)
Query: 76 KASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKK 135
++ + GTV PGSKS+S+R LLLAAL+EG + + NLL SED L+AL+
Sbjct: 1 MEKLTLVVKPSPLRGTVRAPGSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRA 60
Query: 136 LGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSY 195
LG +E++ +V G GG L GN+GT +R LT + +
Sbjct: 61 LGARIEKEGD--TLVVRGTGGELK-----EPPAVLDCGNSGTTLRLLTGLLALGSPGET- 112
Query: 196 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQ 255
+L G +R+RP+G LV L+QLGA +D G P+ I KGGL GG+V++ G +SSQ
Sbjct: 113 VLTGDESLRKRPMGPLVDALRQLGAKIDGREGEGYLPLTI--KGGLKGGEVEIDGPVSSQ 170
Query: 256 YLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
+++LL+ APL I + L S PY++ TL +++ FGV VE+ RF+I GGQK
Sbjct: 171 QVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDMLKAFGVEVENEG--YRFYIPGGQK 228
Query: 316 YKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375
PG+ V GD SSA++F+A AA+T + + D +VLEKMGA +
Sbjct: 229 LT-PGDYDVPGDYSSAAFFLAAAAITPRSTGITLKNVQPNPTDKGILDVLEKMGADIEIG 287
Query: 376 ENSV-TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
++SV V G L+ ++V+M+ MPD+A TLAV+A FA+G T IR+
Sbjct: 288 DDSVLRVRGSGE-------LKGIEVDMDDMPDLAPTLAVLAAFAEGTTRIRN 332
Score = 57.2 bits (139), Expect = 6e-09
Identities = 89/404 (22%), Positives = 147/404 (36%), Gaps = 83/404 (20%)
Query: 58 TVRTVRASASVGTAEKQSKASEIV-------LQPIREI----SGTVTLPGSKSLSNRIL- 105
T+ T+ A ++G ++ + +V +P + SGT R+L
Sbjct: 51 TLATLEALRALGARIEKEGDTLVVRGTGGELKEPPAVLDCGNSGTTL---------RLLT 101
Query: 106 -LLAALSEGTTVV--DNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA- 161
LLA S G TV+ D L + ++DAL++LG ++ G PL
Sbjct: 102 GLLALGSPGETVLTGDESLRKRPMGPLVDALRQLGAKIDG---------REGEGYLPLTI 152
Query: 162 --KQQTGEIELFLGNAGTAMRPLTAAVTAAG---GNLSYILDGVPRMRERPIGDL-VTGL 215
+ GE+E+ G + +++ + A + I+ GV +P D + L
Sbjct: 153 KGGLKGGEVEID-GPVSSQQ--VSSLLLLAPLLAEGTTIIVGGVLE--SKPYIDHTLDML 207
Query: 216 KQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEI 275
K G +V+ I G L G + G SS A +AA
Sbjct: 208 KAFGVEVEN----EGYRFYIPGGQKLTPGDYDVPGDYSS---AAFFLAAAAITPRSTGIT 260
Query: 276 IDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSA---- 331
+ + P + L ++E+ G +E D ++G + K +E D
Sbjct: 261 LKNVQPNPTDKGILDVLEKMGADIEIGDDSV-LRVRGSGELKG-----IEVDMDDMPDLA 314
Query: 332 -SYFVAGAAVTGGTVTVEGCGTSSLQGDVK-------FAEVLEKMGAKVTWTENSVTVTG 383
+ V A G T L+ VK A L K+G +V TE+ + +TG
Sbjct: 315 PTLAVLAAFAEGTTRIR---NAEELR--VKESDRIAAMATELRKLGVEVEETEDGLIITG 369
Query: 384 PPRDPYGRKHLRAVDV-NMNKMPDVAMTLAVVALFADGPTAIRD 426
K VD +++ AM AV L ++G I D
Sbjct: 370 GT----KLKGAGTVDSYGDHRI---AMAFAVAGLLSEGGVRIDD 406
>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
dehydrogenase/3-phosphoshikimate
1-carboxyvinyltransferase; Provisional.
Length = 673
Score = 296 bits (759), Expect = 5e-94
Identities = 178/348 (51%), Positives = 224/348 (64%), Gaps = 16/348 (4%)
Query: 82 LQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
L P GTV LPGSKS+SNR+LLLAAL+EG T V NLL S+D MLDAL KLG+ +
Sbjct: 245 LGPFSHAQGTVRLPGSKSISNRVLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLS 304
Query: 142 EDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVP 201
D +V G G F +LFLGNAGTA+RPLTAA+ GG Y + GVP
Sbjct: 305 RD--GGTCVVGGTRGAF-----TAKTADLFLGNAGTAVRPLTAALAVNGGE--YRIHGVP 355
Query: 202 RMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALL 261
RM ERPIGDLV GL+Q+GA +D PP+RI +++ G +SSQ+LTALL
Sbjct: 356 RMHERPIGDLVDGLRQIGARIDYEGNEGFPPLRIRPATISVDAPIRVRGDVSSQFLTALL 415
Query: 262 MAAPLAL---GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKS 318
M PL G +EI +LIS PY+E+T+KLM RFGV VE D W RF + G +Y+S
Sbjct: 416 MTLPLVKAKDGASVVEIDGELISKPYIEITIKLMARFGVTVER-DGWQRFTVPAGVRYRS 474
Query: 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS 378
PG VEGDASSASYF+A A+ GG + VEG G +S+QGDV FA L +MGA VT ++
Sbjct: 475 PGTIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFANALMQMGANVTMGDDW 534
Query: 379 VTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
+ V G D +GR L +D++ N +PD AMT+AV ALFADGP+ +R+
Sbjct: 535 IEVRGIGHD-HGR--LAPIDMDFNLIPDAAMTIAVAALFADGPSTLRN 579
>gnl|CDD|238795 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP
synthases and UDP-N-acetylglucosamine enolpyruvyl
transferase. Both enzymes catalyze the reaction of
enolpyruvyl transfer.
Length = 408
Score = 235 bits (600), Expect = 2e-73
Identities = 95/342 (27%), Positives = 161/342 (47%), Gaps = 28/342 (8%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+ G + +PG KS+S+R L+ A+L+EG T V N+L ED+ + L+ LG+ +E+
Sbjct: 1 LHGIIRVPGDKSISHRSLIFASLAEGETKVYNILRGEDVLSTMQVLRDLGVEIEDKDG-- 58
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERP 207
++G G K + L LGN+GTA+R ++ + A + L G + +RP
Sbjct: 59 VITIQGVGM--AGLKA--PQNALNLGNSGTAIRLISGVLAGADFEVE--LFGDDSLSKRP 112
Query: 208 IGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLA 267
+ + LK++GA + + PP+ GK G S+Q +AL+ AA LA
Sbjct: 113 MDRVTLPLKKMGASISGQEERDLPPLLKGGK--NLGPIHYEDPIASAQVKSALMFAALLA 170
Query: 268 LGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGD 327
G I P + T +++ FG + + +QG QK V GD
Sbjct: 171 KGETVIIE---AAKEPTINHTENMLQTFGGHIS-VQGTKKIVVQGPQKLTGQ-KYVVPGD 225
Query: 328 ASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRD 387
SSA++F+ AA+ G + ++ G + +VL MGAK+ E++++V
Sbjct: 226 ISSAAFFLVAAAIAPGRLVLQNVGINE--TRTGIIDVLRAMGAKIEIGEDTISVE----- 278
Query: 388 PYGRKHLRAVDVNMN---KMPDVAMTLAVVALFADGPTAIRD 426
L+A ++ ++ D +A++AL A G T I+D
Sbjct: 279 ---SSDLKATEICGALIPRLIDELPIIALLALQAQGTTVIKD 317
Score = 34.9 bits (80), Expect = 0.075
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGP 421
A+ L MGA + T + + + G + L VN + M A+ AL ADG
Sbjct: 333 ADELNSMGADIEPTADGMIIKGKEK-------LHGARVNTFGDHRIGMMTALAALVADGE 385
Query: 422 TAIRD 426
+
Sbjct: 386 VELDR 390
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 96.2 bits (240), Expect = 2e-21
Identities = 92/313 (29%), Positives = 149/313 (47%), Gaps = 35/313 (11%)
Query: 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNV 140
+ P + GT+ +PG KS+S+R ++L +L+EG T V+ L ED L A + +G+ +
Sbjct: 305 SVLPGGAVKGTIRVPGDKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDMGVVI 364
Query: 141 EEDFAMKRAIVEGCG--GLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
E R + G G GL K G L++GN+GT+MR L+ + A + +L
Sbjct: 365 EGPHN-GRVTIHGVGLHGL----KAPPG--PLYMGNSGTSMRLLSGLL--AAQSFDSVLT 415
Query: 199 GVPRMRERPIGDLVTGLKQLGADVDCILGTNC-PPVRINGKGGLPGGKVKLSGKLSSQYL 257
G + +RP+ + L+++GA ++ G PP+ I G L G L S+Q
Sbjct: 416 GDASLSKRPMERVAKPLREMGAVIET--GEEGRPPLSIRGGQRLKGIHYDLPMA-SAQVK 472
Query: 258 TALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMER----FGVFVEHSDSWDRFFIQGG 313
+ LL+A A G SV T ER FG V+ + ++GG
Sbjct: 473 SCLLLAGLYAEGET---------SVTEPAPTRDHTERMLRGFGYPVKVEG--NTISVEGG 521
Query: 314 QKYKSPGNAFVEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKV 372
K + + V D SSA++F+ A++ G+ +T+E G + + ++L+ MGA +
Sbjct: 522 GKLTA-TDIEVPADISSAAFFLVAASIAEGSELTLEHVGINPTR--TGVIDILKLMGADI 578
Query: 373 TWTENSVTVTGPP 385
T EN V G P
Sbjct: 579 T-LENEREVGGEP 590
>gnl|CDD|238796 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate
+ UDP-N-acetyl-D-glucosamine = phosphate +
UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This
enzyme is of interest as a potential target for
anti-bacterial agents. The only other known enolpyruvyl
transferase is the related
5-enolpyruvylshikimate-3-phosphate synthase.
Length = 400
Score = 68.7 bits (169), Expect = 1e-12
Identities = 88/338 (26%), Positives = 137/338 (40%), Gaps = 79/338 (23%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
+SG V + G+K+ + IL A L++ + N+ D+ M++ L+ LG VE +
Sbjct: 1 LSGEVRISGAKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSLGAKVEFEGENT 60
Query: 148 RAI----VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGG-NLSYIL 197
I + + L ++ I L LG PL A V+ GG +
Sbjct: 61 LVIDASNINSTEAPYELVRKMRASI-LVLG-------PLLARFGEARVSLPGGCAIG--- 109
Query: 198 DGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQY 256
RP+ DL + GL+ LGA ++ + V G L G ++ L S
Sbjct: 110 -------ARPV-DLHLKGLEALGAKIE--IEDGY--VEAKAAGRLKGARIYL--DFPS-- 153
Query: 257 LTA---LLMAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMERFGVFVEHSDSWD 306
+ A ++MAA LA G I EI+D L + L M G +E + + D
Sbjct: 154 VGATENIMMAAVLAEGTTVIENAAREPEIVD-LANF------LNKM---GAKIEGAGT-D 202
Query: 307 RFFIQG-----GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKF 361
I+G G ++ V D A F+ AA+TGG +TVE L+
Sbjct: 203 TIRIEGVERLHGAEHT------VIPDRIEAGTFLVAAAITGGDITVENVIPEHLEA---V 253
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
L +MGAK+ E+ + V G +AVD+
Sbjct: 254 LAKLREMGAKIEIGEDGIRVDGDGGRL------KAVDI 285
Score = 33.2 bits (77), Expect = 0.23
Identities = 75/327 (22%), Positives = 117/327 (35%), Gaps = 83/327 (25%)
Query: 125 DIHHMLDALKKLGLNVEEDFAMKRAIVEG--CGGLFPLAKQQTGEIELFLGNAGTAMRPL 182
D+H L L+ LG +E + A G G L G E N +
Sbjct: 114 DLH--LKGLEALGAKIEIEDGYVEAKAAGRLKGARIYLDFPSVGATE----NI------M 161
Query: 183 TAAVTAAGGNLSYILDGVPRM----RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGK 238
AAV A +G + RE I DL L ++GA ++ GT+ +RI G
Sbjct: 162 MAAVLA---------EGTTVIENAAREPEIVDLANFLNKMGAKIEGA-GTDT--IRIEGV 209
Query: 239 GGLPGGKVKLSGKLSSQYLTA--LLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMER 294
L G + + + A L+AA + G++ +E I + L +V L +
Sbjct: 210 ERLHGAEH----TVIPDRIEAGTFLVAAAITGGDITVENVIPEHLEAV------LAKLRE 259
Query: 295 FGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASY----------FVAGAAVTGGT 344
G +E + R GG + K+ D +A Y F+A GT
Sbjct: 260 MGAKIEIGEDGIRVDGDGG-RLKAV-------DIETAPYPGFPTDLQAQFMALLTQAEGT 311
Query: 345 VTVEGCGTSSL-QGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNK 403
+ T ++ + + L +MGA + N+ + G L V
Sbjct: 312 SVI----TETIFENRFMHVDELNRMGADIKVEGNTAIIRGV-------TKLSGAPV---M 357
Query: 404 MPD----VAMTLAVVALFADGPTAIRD 426
D A+ LA L A+G T I +
Sbjct: 358 ATDLRAGAALVLA--GLAAEGETIISN 382
Score = 31.3 bits (72), Expect = 1.1
Identities = 45/200 (22%), Positives = 73/200 (36%), Gaps = 46/200 (23%)
Query: 244 GKVKLSG-KLSSQYLTALLMAAPLALGNVEIE----IIDKLISVPYVEMTLKLMERFGVF 298
G+V++SG K ++ +L AA L V + ++D VE ++L+ G
Sbjct: 3 GEVRISGAKNAA---LPILAAALLTDEPVTLRNVPDLLD-------VETMIELLRSLGAK 52
Query: 299 VEHSDSWDRFFIQ--GGQKYKSPGNAFVEGDASS--ASYFVAGAAVT-GGTVTVE---GC 350
VE + + I ++P AS V G + G V GC
Sbjct: 53 VEF-EGENTLVIDASNINSTEAPYEL-----VRKMRASILVLGPLLARFGEARVSLPGGC 106
Query: 351 GTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--- 407
+ D+ + LE +GAK+ + V R L+ + ++ P V
Sbjct: 107 AIGARPVDLHL-KGLEALGAKIEIEDGYVEAKAAGR-------LKGARIYLD-FPSVGAT 157
Query: 408 --AMTLAVVALFADGPTAIR 425
M AV A+G T I
Sbjct: 158 ENIMMAAV---LAEGTTVIE 174
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the
Enolpyruvate transferase (EPT) family and the RNA 3'
phosphate cyclase family (RTPC). These 2 families differ
in that EPT is formed by 3 repeats of an alpha-beta
structural domain while RTPC has 3 similar repeats with
a 4th slightly different domain inserted between the 2nd
and 3rd repeat. They evidently share the same active
site location, although the catalytic residues differ.
Length = 211
Score = 64.6 bits (157), Expect = 5e-12
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 16/112 (14%)
Query: 325 EGDASSASYFVAGAAVTGGTVTVEGCGTSS-----LQGDVKFAEVLEKM-GAKVTWTENS 378
+G F+ AA++GG +TV G L+ + F + LEK+ GA V E
Sbjct: 7 KGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELG 66
Query: 379 VTVTGPPRDPYGRKHLRAVDVNMN-----KMPDVAMTLAVVALFADGPTAIR 425
R + +R DV DV T+ + LFA GPT +
Sbjct: 67 SD-----RISFRPGTVRGGDVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLT 113
>gnl|CDD|236486 PRK09369, PRK09369, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Validated.
Length = 417
Score = 58.9 bits (144), Expect = 2e-09
Identities = 94/353 (26%), Positives = 138/353 (39%), Gaps = 110/353 (31%)
Query: 88 ISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDF 144
+SG VT+ G+K N L +LAA L+E + N+ D+ M++ L+ LG VE F
Sbjct: 12 LSGEVTISGAK---NAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSLGAKVE--F 66
Query: 145 AMKRAIVEGCGGL------FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+ + + L K+ I L LG PL A
Sbjct: 67 DGNGTVTIDASNINNTEAPYELVKKMRASI-LVLG-------PLLA-------------- 104
Query: 199 GVPRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244
R E RP+ DL + GL+ LGA+++ G V G L G
Sbjct: 105 ---RFGEAKVSLPGGCAIGARPV-DLHLKGLEALGAEIEIEHGY----VEAKADGRLKGA 156
Query: 245 KVKLSGKLSSQYLTA---LLMAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMER 294
+ L S + A +LMAA LA G I EI+D L + L M
Sbjct: 157 HIVLD-FPS---VGATENILMAAVLAEGTTVIENAAREPEIVD-LANF------LNKM-- 203
Query: 295 FGVFVEHSDSWDRFFIQG-----GQKYKSPGNAFVEGD---ASSASYFVAGAAVTGGTVT 346
G + + + D I+G G ++ V D A ++ VA AA+TGG VT
Sbjct: 204 -GAKISGAGT-DTITIEGVERLHGAEHT------VIPDRIEA--GTFLVA-AAITGGDVT 252
Query: 347 VEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
+ G L+ L + GA++ E+ + V P R L+AVD+
Sbjct: 253 IRGARPEHLEA---VLAKLREAGAEIEEGEDGIRVDMPGR-------LKAVDI 295
Score = 30.0 bits (69), Expect = 2.6
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 16/46 (34%)
Query: 105 LLLAALS-EGTTVVDNLLSSEDIHHMLD--------ALKKLGLNVE 141
L+LA L EGTT+VD I+H LD L+ LG ++E
Sbjct: 377 LVLAGLVAEGTTIVDR------IYH-LDRGYERIEEKLRALGADIE 415
Score = 28.1 bits (64), Expect = 8.9
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 361 FAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD----VAMTLAVVAL 416
L +MGA + ++ V G + L V D ++ LA L
Sbjct: 335 HVPELIRMGADIEVDGHTAVVRGVEK-------LSGAPV---MATDLRASASLVLA--GL 382
Query: 417 FADGPTAIRD 426
A+G T +
Sbjct: 383 VAEGTTIVDR 392
>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 416
Score = 58.4 bits (142), Expect = 3e-09
Identities = 92/360 (25%), Positives = 145/360 (40%), Gaps = 62/360 (17%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED---F 144
+SG VT+ G+K+ + I+ L++ + N+ D+ LD L+ LG VE D
Sbjct: 12 LSGEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNLGARVERDNNTL 71
Query: 145 AMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGGNLSYILDG 199
+ + + L ++ I L LG PL A V+ GG
Sbjct: 72 EINTPNINSTEAPYELVRKMRASI-LVLG-------PLLARFGKAVVSLPGGCA------ 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ RP+ + GLK LGA++ G V + KG L G + L K+S
Sbjct: 118 ---IGARPVDLHLKGLKALGAEIVIEDGY----VYASAKGRLVGAHIVLD-KVSVGATEN 169
Query: 260 LLMAAPLALGNV-------EIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQG 312
++MAA LA G E EI+D L L M G + + S + I+G
Sbjct: 170 IIMAAVLAEGTTVIENAAREPEIVD-LCEF------LNKM---GAKITGAGS-NTITIEG 218
Query: 313 GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKV 372
+K V D A F+ AA+TGG +T++ L+ L ++GA+V
Sbjct: 219 VEKLHG-TEHSVIPDRIEAGTFLVAAAITGGEITIKNVRPDHLRA---VLAKLREIGAEV 274
Query: 373 TWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRDGM 428
EN + V +K L+AVD+ P D+ + A+G + I + +
Sbjct: 275 EVDENGIRVD------MRQKRLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVITETV 328
Score = 43.0 bits (102), Expect = 2e-04
Identities = 75/367 (20%), Positives = 130/367 (35%), Gaps = 76/367 (20%)
Query: 73 KQSKASEIVLQPI--REISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHML 130
++ +AS +VL P+ R V+LPG ++ R + D+H L
Sbjct: 89 RKMRASILVLGPLLARFGKAVVSLPGGCAIGARPV-------------------DLH--L 127
Query: 131 DALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAG 190
LK LG + + A +G + I L + G + AAV A G
Sbjct: 128 KGLKALGAEIVIEDGYVYASAKG--------RLVGAHIVLDKVSVGATENIIMAAVLAEG 179
Query: 191 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSG 250
+ +++ R E I DL L ++GA I G + I G L G + +
Sbjct: 180 ---TTVIENAAR--EPEIVDLCEFLNKMGAK---ITGAGSNTITIEGVEKLHGTEHSV-- 229
Query: 251 KLSSQYLTA-LLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMERFGVFVEHSDSWDR 307
+ + L+AA + G + I+ D L +V L + G VE ++ R
Sbjct: 230 -IPDRIEAGTFLVAAAITGGEITIKNVRPDHLRAV------LAKLREIGAEVEVDENGIR 282
Query: 308 FFIQGGQKYKSPGNAFVEGDASSA------SYFVAGAAVTGGTVTVEGCGTSSLQGDVKF 361
+ K +E + F+A + GT + + +
Sbjct: 283 VD----MRQKRLKAVDIETLPYPGFPTDLQAQFMALLSQAEGTSVIT---ETVFENRFMH 335
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--AMTLAVVALFAD 419
+ L +MGA + N+ + G + L +V D+ L + L A+
Sbjct: 336 VDELIRMGANIKLEGNTAVIHGVEQ-------LSGAEV---MATDLRAGAALVLAGLVAE 385
Query: 420 GPTAIRD 426
G T + +
Sbjct: 386 GETIVHN 392
Score = 32.6 bits (75), Expect = 0.44
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVK-FAEV 364
D+ ++GG+ G + G ++A +A +T VT+ S DVK ++
Sbjct: 2 DKLVVEGGKPLS--GEVTISGAKNAALPIIAATLLTDEPVTLTNVPDLS---DVKTTLDL 56
Query: 365 LEKMGAKVTWTENSVTVTGPP 385
L +GA+V N++ + P
Sbjct: 57 LRNLGARVERDNNTLEINTPN 77
>gnl|CDD|223837 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase
[Cell envelope biogenesis, outer membrane].
Length = 421
Score = 57.9 bits (141), Expect = 3e-09
Identities = 82/342 (23%), Positives = 135/342 (39%), Gaps = 87/342 (25%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMK 147
++G VT+ G+K+ + +L L++ + N+ D+ ML+ L+ LG VE D
Sbjct: 12 LNGEVTISGAKNAALPLLAATLLADEPVTLTNVPDLSDVETMLELLRNLGAKVERD---- 67
Query: 148 RAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRP------LTAAVTAAGGNLSYILDGVP 201
GE+E+ N + P + A++ G L+
Sbjct: 68 ----------------GDGELEIDAPNINSTEAPYELVRKMRASILVLGPLLA------- 104
Query: 202 RMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVK 247
R + RP+ DL + GL+ LGA+++ I + + GL G +
Sbjct: 105 RFGKAKVSLPGGCAIGARPV-DLHLKGLEALGAEIE-IEHGY---IEASAPKGLKGAHIY 159
Query: 248 LSGKLSSQYLTA---LLMAAPLALGNVEI-------EIIDKLISVPYVEMTLKLMERFGV 297
L K+S + A ++MAA LA G I EI+D L + L M G
Sbjct: 160 LD-KVS---VGATENIMMAAVLAEGTTVIENAAREPEIVD-LANF------LNKM---GA 205
Query: 298 FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQG 357
+E + + I+G +K V D A F+ AA+TGG VT+E L+
Sbjct: 206 KIEGAGT-STITIEGVEKLHG-AEHSVIPDRIEAGTFLVAAAITGGDVTIENVRPEHLEA 263
Query: 358 DVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
L + G + E+ + V + L+AVD+
Sbjct: 264 ---VLAKLREAGVDIEEGEDGIRVDMEGKR------LKAVDI 296
Score = 35.9 bits (84), Expect = 0.040
Identities = 53/244 (21%), Positives = 88/244 (36%), Gaps = 60/244 (24%)
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKL------SGKLSSQYL 257
RE I DL L ++GA I G + I G L G + + +G
Sbjct: 189 REPEIVDLANFLNKMGAK---IEGAGTSTITIEGVEKLHGAEHSVIPDRIEAG------- 238
Query: 258 TALLMAAPLALGNVEIE--IIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
L+AA + G+V IE + L +V L + GV +E + R ++G ++
Sbjct: 239 -TFLVAAAITGGDVTIENVRPEHLEAV------LAKLREAGVDIEEGEDGIRVDMEG-KR 290
Query: 316 YKSPGNAFVEGDASSASY----------FVAGAAVTGGTVTVEGCGTSSL-QGDVKFAEV 364
K+ D + Y F+A V GT + T ++ +
Sbjct: 291 LKAV-------DIKTLPYPGFPTDMQAQFMALLTVAEGTSVI----TETIFENRFMHVPE 339
Query: 365 LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDV--AMTLAVVALFADGPT 422
L +MGA + N+ + G + L V D+ + L + L A+G T
Sbjct: 340 LIRMGANIKLEGNTAVIQGVEQ-------LSGAPV---MATDLRASAALVLAGLVAEGET 389
Query: 423 AIRD 426
+
Sbjct: 390 IVNR 393
Score = 34.8 bits (81), Expect = 0.086
Identities = 42/174 (24%), Positives = 62/174 (35%), Gaps = 51/174 (29%)
Query: 234 RINGKGGLPGGKVKLSG-KLSSQYLTALLMAAPLALGNVEIEIIDKLISVPY---VEMTL 289
I G G G+V +SG K ++ LL A LA V + +VP VE L
Sbjct: 5 IIEG-GNPLNGEVTISGAKNAA---LPLLAATLLADEPVTLT------NVPDLSDVETML 54
Query: 290 KLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASS---------------ASYF 334
+L+ G VE D G+ +E DA + AS
Sbjct: 55 ELLRNLGAKVE----RD-------------GDGELEIDAPNINSTEAPYELVRKMRASIL 97
Query: 335 VAGAAVT-GGTVTVE---GCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGP 384
V G + G V GC + D+ + LE +GA++ + + P
Sbjct: 98 VLGPLLARFGKAKVSLPGGCAIGARPVDLHL-KGLEALGAEIEIEHGYIEASAP 150
Score = 30.5 bits (70), Expect = 1.6
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKF-AEV 364
D+ I+GG G + G ++A +A + VT+ S DV+ E+
Sbjct: 2 DKLIIEGGNPLN--GEVTISGAKNAALPLLAATLLADEPVTLTNVPDLS---DVETMLEL 56
Query: 365 LEKMGAKVTWTENSVTVTGPPRD-----PYGR-KHLRA 396
L +GAKV + P PY + +RA
Sbjct: 57 LRNLGAKVERDGDGELEIDAPNINSTEAPYELVRKMRA 94
>gnl|CDD|183779 PRK12830, PRK12830, UDP-N-acetylglucosamine
1-carboxyvinyltransferase; Reviewed.
Length = 417
Score = 33.7 bits (78), Expect = 0.20
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 88 ISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
+SG VT+ G+K+ + ++ A L++G +D + D+H ++D L++LG V+ D
Sbjct: 12 LSGEVTISGAKNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEELGGKVKRD 67
Score = 31.7 bits (73), Expect = 0.71
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 332 SYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGR 391
+Y + AA GG VT+ L+ F LE+MG +V E+S+ V +
Sbjct: 237 TYMILAAA-CGGGVTINNVIPEHLES---FIAKLEEMGVRVEVNEDSIFV-------EKQ 285
Query: 392 KHLRAVDVNMNKMP----DVAMTLAVVALFADGPTAIRD 426
+L+AVD+ P D+ L + L A+G + + D
Sbjct: 286 GNLKAVDIKTLPYPGFATDLQQPLTPLLLKANGRSVVTD 324
>gnl|CDD|225128 COG2218, FwdC, Formylmethanofuran dehydrogenase subunit C [Energy
production and conversion].
Length = 264
Score = 31.6 bits (72), Expect = 0.67
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 17/112 (15%)
Query: 269 GNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI----------QGGQKYKS 318
G EI K +SV + + L + F V DS I + G++ +
Sbjct: 28 GKSAEEI--KALSVYFGNLVEPLGDFFEVEGNGGDSGADTKISIDGDVSRVKRIGERMSA 85
Query: 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGA 370
G VEGD GA + GG + V G S ++K E+ A
Sbjct: 86 -GEIIVEGDVGMH----VGAGMKGGKIVVNGNADSWAGIEMKGGEIKIFGNA 132
>gnl|CDD|188107 TIGR01086, fucA, L-fuculose phosphate aldolase. Members of this
family are L-fuculose phosphate aldolase from various
Proteobacteria, encoded in fucose utilization operons.
Homologs in other bacteria given similar annotation but
scoring below the trusted cutoff may share extensive
sequence similarity but are not experimenally
characterized and are not found in apparent fucose
utilization operons; we consider their annotation as
L-fuculose phosphate aldolase to be tenuous. This model
has been narrowed in scope from the previous version
[Energy metabolism, Sugars].
Length = 214
Score = 31.1 bits (70), Expect = 0.88
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T + + ++ V T K+SKA I+LQ I+ V L + L++ + +LA+L T +
Sbjct: 129 TFGSHKLASYVATGIKESKA--ILLQHHGLIACEVNLEKALWLAHEVEVLASLYLKTLAI 186
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+LS E + +L K GL +EE
Sbjct: 187 TLEVPVLSKEQMAVVLGKFKTYGLRIEE 214
>gnl|CDD|238338 cd00604, IPT_CGTD, IPT domain (domain D) of cyclodextrin
glycosyltransferase (CGTase) and similar enzymes. These
enzymes are involved in the enzymatic hydrolysis of
alpha-1,4 linkages of starch polymers and belong to the
glycosyl hydrolase family 13. Most consist of three
domains (A,B,C) but CGTase is more complex and has two
additional domains (D,E). The function of the IPT/D
domain is unknown.
Length = 81
Score = 28.5 bits (64), Expect = 1.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 342 GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGP 384
G TVT+ G G S G V F ++ ++W++ S+ V P
Sbjct: 14 GNTVTISGEGFGSTGGTVYFGGTAAEV---LSWSDTSIVVEVP 53
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 28.6 bits (65), Expect = 1.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 199 GVPRMRERPIGDLVTGLKQLGADVD 223
+RE P D++ L + GA+V
Sbjct: 10 NTDDLRESPALDIIEELLEAGAEVV 34
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 30.5 bits (69), Expect = 2.0
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 131 DALKKLGLNVEED---FAMKRAI--VEGCGGLFPLAKQQTGE-----IE-LFLGNAGTAM 179
A ++L VE++ AM++A VE L AK + G +E LF N G +
Sbjct: 375 KAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPV 434
Query: 180 RPLTAAVTAAGGNLSYIL 197
+PL A A+GG LS ++
Sbjct: 435 KPL--AKVASGGELSRVM 450
>gnl|CDD|219600 pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain.
Copper amine oxidases catalyze the oxidative
deamination of primary amines to the corresponding
aldehydes, while reducing molecular oxygen to hydrogen
peroxide. These enzymes are dimers of identical
subunits, each comprising four domains. The N-terminal
domain, which is absent in some amine oxidases, consists
of a five-stranded antiparallel beta sheet twisted
around an alpha helix. The D1 domains from the two
subunits comprise the 'stalk' of the mushroom-shaped
dimer, and interact with each other but do not pack
tightly against each other.
Length = 93
Score = 28.0 bits (63), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 359 VKFAEVLEKMGAKVTWTENSVTVT 382
V + E +GAKV+W + TVT
Sbjct: 7 VPLRAIAEALGAKVSWDGKTKTVT 30
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain. This domain is found in
phenylalanine-tRNA synthetase beta subunits.
Length = 68
Score = 27.1 bits (61), Expect = 4.1
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 351 GTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPR 386
G L ++ E+L+++G +V + +++ VT P
Sbjct: 15 GLEILAEEI--EEILKRLGFEVEVSGDTLEVTVPSY 48
>gnl|CDD|221320 pfam11927, DUF3445, Protein of unknown function (DUF3445). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 264 to 418
amino acids in length. This protein has a conserved RLP
sequence motif. This protein has two completely
conserved R residues that may be functionally important.
Length = 245
Score = 28.7 bits (65), Expect = 4.7
Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 37/107 (34%)
Query: 113 GTTVVDNLLSSEDIH----HMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEI 168
G N L+ E D L+ LG V+EDF I++ + +
Sbjct: 72 GDRTWHNRLTGETFPLTAGDPEDPLETLGRLVQEDF----LILD-----------KDEDG 116
Query: 169 ELFLGNAGTAMRPLTAAVTAAGG---------NLSYILDGVPRMRER 206
E FL A AV G LS I VP +E+
Sbjct: 117 EYFL----RA-----GAVCFPAGWSLADKIGMPLSEIHGPVPGYKEK 154
>gnl|CDD|216322 pfam01137, RTC, RNA 3'-terminal phosphate cyclase. RNA cyclases
are a family of RNA-modifying enzymes that are conserved
in all cellular organisms. They catalyze the
ATP-dependent conversion of the 3'-phosphate to the
2',3'-cyclic phosphodiester at the end of RNA, in a
reaction involving formation of the covalent AMP-cyclase
intermediate. The structure of RTC demonstrates that
RTCs are comprised two domain. The larger domain
contains an insert domain of approximately 100 amino
acids.
Length = 330
Score = 29.1 bits (66), Expect = 4.9
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 256 YLTALLMAAPLALGNVEIEII-----DKLISVPYVEM-TLKLMERFGVFVE 300
L LL A G I + V Y+ TL L+E+FG+ E
Sbjct: 95 VLQTLLPLLLFAKGPSRITLKGGTDVPWAPPVDYIRNVTLPLLEKFGIEGE 145
>gnl|CDD|181226 PRK08087, PRK08087, L-fuculose phosphate aldolase; Provisional.
Length = 215
Score = 28.6 bits (64), Expect = 5.9
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 58 TVRTVRASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVV 117
T T S V A K KA +LQ I+ V L + L++ + +LA L T +
Sbjct: 130 TFGTRELSEHVALALKNRKA--TLLQHHGLIACEVNLEKALWLAHEVEVLAQLYLKTLAI 187
Query: 118 DN---LLSSEDIHHMLDALKKLGLNVEE 142
+ +LS E+I +L+ K GL +EE
Sbjct: 188 TDPVPVLSDEEIAVVLEKFKTYGLRIEE 215
>gnl|CDD|222472 pfam13954, PapC_N, PapC N-terminal domain. The PapC N-terminal
domain is a structural domain found at the N-terminus of
the E. coli PapC protein. Pili are assembled using the
chaperone usher system. In E.coli this is composed of
the chaperone PapD and the usher PapC. This domain
represents the N-terminal domain from PapC and its
homologues. This domain is involved in substrate
binding.
Length = 145
Score = 28.0 bits (63), Expect = 5.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 133 LKKLGLNVEEDFAMKRAIVEGC 154
L KLG+N+E A++++ E C
Sbjct: 66 LSKLGINIEAFPALQQSNDEQC 87
>gnl|CDD|235840 PRK06599, PRK06599, DNA topoisomerase I; Validated.
Length = 675
Score = 29.1 bits (66), Expect = 6.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 134 KKLGLNVEEDFAMKRAIVEG 153
KK G++ + DFA K I+EG
Sbjct: 40 KKGGVDPDNDFAPKYEIIEG 59
>gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 36K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
are all bacterial and include sohB peptidase and protein
C. These are sometimes referred to as 36K type since
they contain only one domain, unlike E. coli SppA that
also contains an amino-terminal domain. Site-directed
mutagenesis and sequence analysis have shown these SppAs
to be serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad and not the
usual Ser-His-Asp catalytic triad found in the majority
of serine proteases.
Length = 214
Score = 28.3 bits (64), Expect = 6.4
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 322 AFVEGDASSASYFVAGAA---VTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT 373
AFV G A+SA+Y++A AA V T V G + V ++ LEK G KVT
Sbjct: 78 AFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASH--VDQSKALEKAGLKVT 130
>gnl|CDD|217162 pfam02645, DegV, Uncharacterized protein, DegV family COG1307. The
structure of this protein revealed a bound fatty-acid
molecule in a pocket between the two protein domains.
The structure indicates that this family has the
molecular function of fatty-acid binding and may play a
role in the cellular functions of fatty acid transport
or metabolism.
Length = 211
Score = 28.0 bits (63), Expect = 7.2
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 248 LSGKLSSQYLTALLMAAPLALGNVEIEIID-KLISVPYVEMTLKLME 293
+S LS Y +A L V++ +ID K +S+ + L+
Sbjct: 18 ISSGLSGTYQSAKQAKE--ELPGVKVRVIDSKSVSMGLGLLVLEAAR 62
>gnl|CDD|113755 pfam04996, AstB, Succinylarginine dihydrolase. This enzyme
transforms N(2)-succinylglutamate into succinate and
glutamate. This is the fifth and last step in arginine
catabolism by the arginine succinyltransferase pathway.
Length = 439
Score = 28.3 bits (63), Expect = 8.1
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 370 AKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMN-----KMPDVAMTLAVVALFAD 419
A WT N+ TV GR HL ++N + PD TL +F D
Sbjct: 102 ASSMWTANAATVLPSADTADGRVHLTTANLNTKLHRSLEAPDTYRTLR--RVFND 154
>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 28.2 bits (63), Expect = 9.0
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 199 GVPRMRERPIGDLVTG-----LKQLGADVDCILGTNCPPVRINGKGGLPGGKV 246
G+ + +RP V G +++L AD+ + T P R+ LP G V
Sbjct: 202 GLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLR---RLPDGVV 251
>gnl|CDD|226243 COG3720, HemS, Putative heme degradation protein [Inorganic ion
transport and metabolism].
Length = 349
Score = 28.2 bits (63), Expect = 9.4
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 125 DIHHMLDALKKLGLN-------VEEDFAMKRAIVEGC-GGLFPLAKQQTGEIELFLGNAG 176
D+H LK+ L V +D A + + + A + I +F+GN G
Sbjct: 198 DVHQFFGLLKRHNLTRQQALRLVGDDLAWR--VDNSALAQMLESAAEDGLPIMVFVGNRG 255
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,485,425
Number of extensions: 2108051
Number of successful extensions: 2386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2273
Number of HSP's successfully gapped: 85
Length of query: 429
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 329
Effective length of database: 6,502,202
Effective search space: 2139224458
Effective search space used: 2139224458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)