RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014155
(429 letters)
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB:
1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A*
1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A*
2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Length = 450
Score = 483 bits (1245), Expect = e-170
Identities = 182/357 (50%), Positives = 232/357 (64%), Gaps = 16/357 (4%)
Query: 70 TAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHM 129
+ + + LQPI ISG V LPGSKS+SNR LLLAAL+ GTT + NLL S+DI HM
Sbjct: 18 LYFQSNAMESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHM 77
Query: 130 LDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAA 189
L+AL KLG+N VEG G F +ELFLGNAGTAMRPL AA+
Sbjct: 78 LNALTKLGVNYRLSADKTTCEVEGLGQAFHTT----QPLELFLGNAGTAMRPLAAALCLG 133
Query: 190 GGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLS 249
G+ Y+L G PRM+ERPIG LV L+Q GA ++ + N PP+RI G G L G V +
Sbjct: 134 QGD--YVLTGEPRMKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTG-LQAGTVTID 190
Query: 250 GKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFF 309
G +SSQ+LTA LM+APLA G V I+I+ +L+S PY+++TL +ME+FGV V + D + F
Sbjct: 191 GSISSQFLTAFLMSAPLAQGKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHD-YQEFV 249
Query: 310 IQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMG 369
I GQ Y SPG VEGDASSASYF+A AA+ GG V V G G +S+QGD++FA+ LEKMG
Sbjct: 250 IPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMG 309
Query: 370 AKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRD 426
A++ W ++ V L AVD++ N +PD AMT+A ALFA G TAIR+
Sbjct: 310 AQIEWGDDYVIARRGE--------LNAVDLDFNHIPDAAMTIATTALFAKGTTAIRN 358
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway,
EPSP synthase, structural genomics; HET: S3P; 1.15A
{Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Length = 450
Score = 435 bits (1122), Expect = e-151
Identities = 97/350 (27%), Positives = 159/350 (45%), Gaps = 32/350 (9%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALS----EGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ TVT+PGSKS +NR L+LAAL+ G + + L S D MLDAL+ LGL
Sbjct: 9 APTPVRATVTVPGSKSQTNRALVLAALAAAQGRGASTISGALRSRDTELMLDALQTLGLR 68
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
V+ V G P + G AGT +R + DG
Sbjct: 69 VDGV--GSELTVSGRIEPGP-------GARVDCGLAGTVLRFVPPLAALGSVP--VTFDG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ R RPI L+ L++LG VD P R+ G G L GG V + SSQ+++
Sbjct: 118 DQQARGRPIAPLLDALRELGVAVDG----TGLPFRVRGNGSLAGGTVAIDASASSQFVSG 173
Query: 260 LLMAAPLALGNVEIEII-DKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKS 318
LL++A + ++ L S P++ MT ++ + GV ++ S +R+ ++ G +
Sbjct: 174 LLLSAASFTDGLTVQHTGSSLPSAPHIAMTAAMLRQAGVDIDDST-PNRWQVRPGPV--A 230
Query: 319 PGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS 378
+E D ++A F++ A V+GGTV + G S+Q +L ++ A V ++S
Sbjct: 231 ARRWDIEPDLTNAVAFLSAAVVSGGTVRITGWPRVSVQPADHILAILRQLNAVVIHADSS 290
Query: 379 VTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD--GPTAIRD 426
+ V GP DV++ + ++ ++A +A A + +
Sbjct: 291 LEVRGPTG-------YDGFDVDLRAVGELTPSVAALAALASPGSVSRLSG 333
Score = 38.7 bits (91), Expect = 0.003
Identities = 70/376 (18%), Positives = 118/376 (31%), Gaps = 104/376 (27%)
Query: 89 SGTVTLPGSKSLSNRILL-LAALSEGTTVV--DNLLSSEDIHHMLDALKKLGLNVEEDFA 145
+GTV R + LAAL D I +LDAL++LG+ V+
Sbjct: 95 AGTVL---------RFVPPLAALGSVPVTFDGDQQARGRPIAPLLDALRELGVAVDGTGL 145
Query: 146 MKRAIVEGCGGLFPLAKQQTGEIEL-------FLGNAGTAMRPLTAAVTAAGGNLSYILD 198
R V G G L G + + F+ + + L +A + G L+
Sbjct: 146 PFR--VRGNGSL------AGGTVAIDASASSQFV----SGL--LLSAASFTDG-LTVQHT 190
Query: 199 GVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYL 257
G + P + L+Q G D+D + P G + + + L++
Sbjct: 191 G-SSLPSAPHIAMTAAMLRQAGVDID----DSTPNRWQVRPGPVAARRWDIEPDLTN--A 243
Query: 258 TALLMAAPLALGNVEIEII-------DKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFI 310
A L AA ++ G V I I L ++ + V H+DS +
Sbjct: 244 VAFLSAAVVSGGTVRITGWPRVSVQPADHI--------LAILRQLNAVVIHADSSLE--V 293
Query: 311 QGGQKYKSPGNAFVEGDASSAS-----YFVAGA-AVTGGTVTVEGCGTSSLQGDVK---- 360
+G Y + D + A A G + G L+
Sbjct: 294 RGPTGYDG-----FDVDLRAVGELTPSVAALAALASPGSVSRLSGIA--HLR--GHETDR 344
Query: 361 ---FAEVLEKMGAKVTWTENSVTVTGPPR-----DPYG--RKHLRAVDVNMNKMPDVAMT 410
+ + ++G T + + +T P Y R +AM
Sbjct: 345 LAALSTEINRLGGTCRETPDGLVITATPLRPGIWRAYADHR---------------MAMA 389
Query: 411 LAVVALFADGPTAIRD 426
A++ L + D
Sbjct: 390 GAIIGL-RVAGVEVDD 404
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural
genomics, protein structure initiative; 2.80A {Bacillus
halodurans}
Length = 455
Score = 180 bits (458), Expect = 4e-52
Identities = 101/359 (28%), Positives = 168/359 (46%), Gaps = 29/359 (8%)
Query: 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALK 134
++ V+ + + GT+ +PG KS+S+R ++ AL++GTT V+ L D + +
Sbjct: 2 VMENKTVIPHAKGLKGTIKVPGDKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQ 61
Query: 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLS 194
KLG+++E+ +R V+G G L +GN+GT R + + +
Sbjct: 62 KLGVSIEQAE--ERVTVKGKGWDGLREPSDI----LDVGNSGTTTRLILGIL--STLPFH 113
Query: 195 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
++ G + +RP+ + LK +GA +D N P+ I G G L G S+
Sbjct: 114 SVIIGDESIGKRPMKRVTEPLKSMGAQIDGRDHGNLTPLSIRG-GQLKGIDFHSP-VASA 171
Query: 255 QYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314
Q +A+L+A A G + + + + + T +++E FGV +E I+GGQ
Sbjct: 172 QMKSAILLAGLRAEG--KTSVTEPAKTRDH---TERMLEAFGVNIEKDG--LTVSIEGGQ 224
Query: 315 KYKSPGNAFVEGDASSASYF-VAGAAVTGGTVTVEGCGT-SSLQGDVKFAEVLEKMGAKV 372
+ V GD SSA++F VAGA V +T+ G + G EVL++MGA +
Sbjct: 225 MLT-GQHVVVPGDISSAAFFLVAGAMVPHSRITLTNVGINPTRAG---ILEVLKQMGATL 280
Query: 373 TWTENSVTVTGPPR-DPYGR-KHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
EN G P D L+ V++ + +P D +AV+A A G T I+D
Sbjct: 281 AM-ENERVQGGEPVADLTIETSVLQGVEIGGDIIPRLIDEIPIIAVLATQASGRTVIKD 338
Score = 41.8 bits (99), Expect = 3e-04
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAVVALFAD 419
L K+GA + T++ + + GP G V + D + M +A+ AL A+
Sbjct: 354 VSELTKLGASIHATDDGMIIEGPTPLKGGVT----VSSHG----DHRIGMAMAIAALLAE 405
Query: 420 GPTAIRD 426
P +
Sbjct: 406 KPVTVEG 412
Score = 31.0 bits (71), Expect = 0.88
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 104 ILLLAALSEGTTVVDNLLSSE------D-IHHMLDALKKLGLNVEE 142
I +LA + G TV+ + E + I ++ L KLG ++
Sbjct: 323 IAVLATQASGRTVIKDA--EELKVKETNRIDTVVSELTKLGASIHA 366
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii}
PDB: 3roi_A* 4egr_A* 3tr1_A
Length = 441
Score = 156 bits (397), Expect = 2e-43
Identities = 101/358 (28%), Positives = 171/358 (47%), Gaps = 26/358 (7%)
Query: 75 SKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALK 134
S A + P + +SG + +PG KS+S+R +LLAA++EG T VD L D M+ AL+
Sbjct: 1 SNAMDYQTIPSQGLSGEICVPGDKSISHRAVLLAAIAEGQTQVDGFLMGADNLAMVSALQ 60
Query: 135 KLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLS 194
++G +++ +VEG G A + L GN+GTA+R L+ + AG +
Sbjct: 61 QMGASIQVIEDENILVVEGVGMTGLQAPPEA----LDCGNSGTAIRLLSGLL--AGQPFN 114
Query: 195 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSS 254
+L G ++ RP+ ++ L +GA +D N PP++I G L G +L S+
Sbjct: 115 TVLTGDSSLQRRPMKRIIDPLTLMGAKID--STGNVPPLKIYGNPRLTGIHYQLP-MASA 171
Query: 255 QYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQ 314
Q + LL+A A G + I + S + E +L++ F ++ + GG
Sbjct: 172 QVKSCLLLAGLYARG--KTCITEPAPSRDHTE---RLLKHFHYTLQKDK--QSICVSGGG 224
Query: 315 KYKSPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVT 373
K K + + GD SSA++F+ A +T G + + G + + + +L+ MGA +
Sbjct: 225 KLK-ANDISIPGDISSAAFFIVAATITPGSAIRLCRVGVNPTR--LGVINLLKMMGADIE 281
Query: 374 WTENSVTVTGPPR-DPYGR-KHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
+ P D R L+ +D+ +++P D L + A A G T +RD
Sbjct: 282 V-THYTEKNEEPTADITVRHARLKGIDIPPDQVPLTIDEFPVLLIAAAVAQGKTVLRD 338
Score = 40.6 bits (96), Expect = 7e-04
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGP 421
+ L+K+G + V + G L +VN +AM AV A GP
Sbjct: 354 VDGLQKLGIAAESLPDGVIIQGGT--------LEGGEVNSYDDHRIAMAFAVAGTLAKGP 405
Query: 422 TAIRD 426
IR+
Sbjct: 406 VRIRN 410
Score = 30.6 bits (70), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 104 ILLLAALSEGTTVVDNLLSSE------D-IHHMLDALKKLGLNVEE 142
+L+ AA+++G TV+ + +E D I M+D L+KLG+ E
Sbjct: 323 LLIAAAVAQGKTVLRDA--AELRVKETDRIAAMVDGLQKLGIAAES 366
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 155 bits (394), Expect = 4e-43
Identities = 88/354 (24%), Positives = 161/354 (45%), Gaps = 38/354 (10%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
IR + G + +PG KS+S+R ++ +L+EG T V ++L ED+ + + LG+ +E+
Sbjct: 6 NIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDK 65
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
V+G G A Q L +GN+GT++R ++ + AG + + G +
Sbjct: 66 D--GVITVQGVGMAGLKAPQNA----LNMGNSGTSIRLISGVL--AGADFEVEMFGDDSL 117
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMA 263
+RP+ + LK++G + + PP+R+ G L +L S+Q +AL+ A
Sbjct: 118 SKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFA 176
Query: 264 APLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 323
A A G E II+K + + E ++++FG + + +QG QK
Sbjct: 177 ALQAKG--ESVIIEKEYTRNHTE---DMLQQFGGHLSVDG--KKITVQGPQKLT-GQKVV 228
Query: 324 VEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENS---- 378
V GD SSA++++ + + ++ G + + +V+ MG K+ TE
Sbjct: 229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETR--TGIIDVIRAMGGKLEITEIDPVAK 286
Query: 379 ---VTVTGPPRDPYGRKHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
+ V L+ ++ +P D +A++A A G T I+D
Sbjct: 287 SATLIVESSD--------LKGTEICGALIPRLIDELPIIALLATQAQGVTVIKD 332
Score = 38.7 bits (91), Expect = 0.003
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVA-LFADG 420
A+ L MGA +T T + + + G L VN + M A+ A L ADG
Sbjct: 348 ADALNSMGADITPTADGMIIKGKS-------ALHGARVNTFGDHRIGMMTAIAALLVADG 400
Query: 421 PTAIRD 426
+
Sbjct: 401 EVELDR 406
Score = 30.6 bits (70), Expect = 1.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 104 ILLLAALSEGTTVVDNL--LS---SEDIHHMLDALKKLGLNVEE 142
I LLA ++G TV+ + L ++ I + DAL +G ++
Sbjct: 317 IALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITP 360
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta
barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A*
2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Length = 445
Score = 153 bits (390), Expect = 2e-42
Identities = 86/356 (24%), Positives = 150/356 (42%), Gaps = 28/356 (7%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ +SGTV +PG KS+S+R + L+ G T + LL ED+ + A++ +G
Sbjct: 5 ATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGAR 64
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
+ ++ I++G G LA + L GNA T R V + G
Sbjct: 65 IRKE--GDTWIIDGVGNGGLLAPEAP----LDFGNAATGCRLTMGLV--GVYDFDSTFIG 116
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ +RP+G ++ L+++G V G + PV + G ++ S+Q +A
Sbjct: 117 DASLTKRPMGRVLNPLREMGVQVKSEDG-DRLPVTLRGPKTPTPITYRVP-MASAQVKSA 174
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVE---HSDSWDRFFIQGGQKY 316
+L+A G +I+ +++ + E K+++ FG + +D ++G K
Sbjct: 175 VLLAGLNTPG--ITTVIEPIMTRDHTE---KMLQGFGANLTVETDADGVRTIRLEGRGKL 229
Query: 317 KSPGNAFVEGDASSASYFVAGAAVT-GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375
V GD SS ++ + A + G VT+ + + L++MGA +
Sbjct: 230 T-GQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTR--TGLILTLQEMGADIEV- 285
Query: 376 ENSVTVTGPPR-DPYGR-KHLRAVDVNMNKMP---DVAMTLAVVALFADGPTAIRD 426
N G D R L+ V V ++ P D LAV A FA+G T +
Sbjct: 286 INPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNG 341
Score = 43.7 bits (104), Expect = 9e-05
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 362 AEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAVVALFAD 419
A L+ G E S+ V G P V + D +AM+ V+ L ++
Sbjct: 357 ANGLKLNGVDCDEGETSLVVRGRPDGKGLGN-ASGAAVATHL--DHRIAMSFLVMGLVSE 413
Query: 420 GPTAIRD 426
P + D
Sbjct: 414 NPVTVDD 420
Score = 33.3 bits (77), Expect = 0.14
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 17/79 (21%)
Query: 104 ILLLAALSEGTTVVDNLLSSE------D-IHHMLDALKKLGLNVEE---DFAMKRAIVEG 153
+ + AA +EG TV++ L E D + + + LK G++ +E +V G
Sbjct: 326 LAVAAAFAEGATVMNGL--EELRVKESDRLSAVANGLKLNGVDCDEGETSL-----VVRG 378
Query: 154 CGGLFPLAKQQTGEIELFL 172
L + L
Sbjct: 379 RPDGKGLGNASGAAVATHL 397
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 8e-10
Identities = 66/435 (15%), Positives = 127/435 (29%), Gaps = 139/435 (31%)
Query: 64 ASASVGTAEKQSKASEIVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSS 123
+ ++ + +E+V + + +S V P +++L L L+E + L
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVE-PSKVGQFDQVLNLC-LTE---FENCYLEG 98
Query: 124 EDIHHMLDALKKLGLNVEEDFAMKRAIVE------GCGG----------LFPLAKQQTGE 167
DIH KL + + +++ LF G
Sbjct: 99 NDIH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGN 153
Query: 168 IELFL--GNAGTAMRPLTAAVTAAG-GNLSYILDGVPRMRE-----RP-IGDLVTG---- 214
+L G G GN D +R+ +GDL+
Sbjct: 154 AQLVAIFG----------------GQGN---TDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 215 LKQLGA---DVDCILGTNCPPVR-INGKGGLPGGKVKLSGKLSSQYLTALLMAAPL---- 266
L +L D + + + + P YL ++ ++ PL
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTP----------DKDYLLSIPISCPLIGVI 244
Query: 267 ALGNVEIEIIDKLISVPYVEMTLKLMERFG--------VFVEHSDSWDRF---------- 308
L + + KL+ E+ L G V + +DSW+ F
Sbjct: 245 QLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 309 -FIQG--GQKYKSPGNAF--------VEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQG 357
F G + P + +E + S ++ + +Q
Sbjct: 303 LFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLS----------ISNLTQEQVQ- 350
Query: 358 DVKFAEVLEKMGAKVTWTE-------NS---VTVTGPPRDPYG-RKHLRAV----DVNMN 402
+ + K + + + N + V+GPP+ YG LR ++ +
Sbjct: 351 -----DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 403 KMPDVAMTLAVVALF 417
++P L F
Sbjct: 406 RIPFSERKLKFSNRF 420
Score = 30.8 bits (69), Expect = 1.1
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 31/104 (29%)
Query: 325 EGDASSASYFVAG---------AAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWT 375
+G + + F AG A++ +++E + EV+ G +
Sbjct: 1750 KGLIPADATF-AGHSLGEYAALASL-ADVMSIE---------SL--VEVVFYRGMTM--- 1793
Query: 376 ENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD 419
+ +V PRD GR + + +N ++ + + + +
Sbjct: 1794 QVAV-----PRDELGRSNYGMIAINPGRV-AASFSQEALQYVVE 1831
Score = 29.6 bits (66), Expect = 2.6
Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 51/153 (33%)
Query: 284 YVEMTLKLMERFGVFVEHSDSWDR---FFIQGGQKYK-SPGNAFVEGDASSASYFVA--G 337
M + L + D W+R F Y S + + + +F G
Sbjct: 1628 EQGMGMDLYKTSKAA---QDVWNRADNHF---KDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 338 AAVTGG--TVTVEGCGTSSLQGDVKFAEVLEKMGAKVTW---------TENSVTVTGPPR 386
+ + E L+ + F E+ E T+ T+ T P
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFRSEKGLLSATQF----TQP-- 1734
Query: 387 DPYGRKHLRAVDVNMNKMPDVAMTLAVVALFAD 419
A+TL A F D
Sbjct: 1735 ---------------------ALTLMEKAAFED 1746
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 55.7 bits (135), Expect = 1e-08
Identities = 47/372 (12%), Positives = 104/372 (27%), Gaps = 119/372 (31%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+SG V G K + ++ +AA + ++N + + + + G +
Sbjct: 22 NRLSGAVRTSGFK---HSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAAGAHAHY 78
Query: 143 DFAMKRAIVEGCGGL-----FPLAKQQTGEIELFLGNAGTAMRPL-----TAAVTAAGG- 191
D A + V+ L + G + L L A ++A+GG
Sbjct: 79 DGADETFTVDASAWDRAELPADLVGRIHGSL-YLLP-------ALVSRNGVARLSASGGC 130
Query: 192 NLSYILDGVPRMRERPIGDL-VTGLKQLGADVDCILGTNCPPVRING-----KGGLPGGK 245
+ G R RP + + + + G + +G L
Sbjct: 131 PI-----G-EGPRGRPD-EHLLDVMGRFGVTTR---------LTADGSVDLTAQRLTPCT 174
Query: 246 VKLSGKLSSQYLTA----------LLMAAPLALG-----NV--EIEIIDKLISVPYVEMT 288
+ + ++ L + L+ + G + + ++ D +++V
Sbjct: 175 IDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQHPYLKPDVTD-MVTV------ 227
Query: 289 LKLM--------------ERFGV-----FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDAS 329
L+ + G V+ + D I+
Sbjct: 228 LRDLGADIEFAGPETWVIHGRGPESLHRPVDVTLIPDL--IEVV---------------- 269
Query: 330 SASYFVAGAAVTGGTVTVEGCGTSSLQGD--VKFAEVLEKMGAKVTWTENSVTVTGPPRD 387
++ A + ++L++MG +V + VT +
Sbjct: 270 --TWICA-GVLLADEPLRITGPGIDRAVHALAPEFDLLDRMGVRVDVGADEVTAHPLTKP 326
Query: 388 PYGRKHLRAVDV 399
LR V+
Sbjct: 327 ------LRPVEF 332
Score = 32.2 bits (74), Expect = 0.37
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVK-FAEV 364
I GG + G G S VA AA V +E C + + E+
Sbjct: 14 PLLEIHGGNRLS--GAVRTSGFKHSLVTTVAAAATASAPVRIENC--PDIV-ETAVLGEI 68
Query: 365 LEKMGAKVTWTENSVTVT 382
GA + T T
Sbjct: 69 FRAAGAHAHYDGADETFT 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 1e-08
Identities = 64/363 (17%), Positives = 115/363 (31%), Gaps = 98/363 (26%)
Query: 117 VDNLLSSEDIHHMLDALKKLGLNVEE--DFAMKRAIVEGCGGLF-PLAKQQTGEIELFLG 173
D + + D + D K + L+ EE M + V G LF L +Q ++ F+
Sbjct: 26 EDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 174 NAGTAMRP----LTAAVTA-----AGGNLSYI-----LDGVPRM-------RERPIGDLV 212
+R L + + + YI L ++ R +P L
Sbjct: 85 ---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 213 TGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAP---LALG 269
L +L V I+G G GK ++ + Y M L L
Sbjct: 142 QALLEL---------RPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 270 NVE-----IEIIDKLISVPYVEMTLKLMERFGVFVEHSDS----------WDRFFIQGGQ 314
N +E++ KL ++ R +HS + R ++ +
Sbjct: 191 NCNSPETVLEMLQKL----LYQIDPNWTSR----SDHSSNIKLRIHSIQAELRRLLK-SK 241
Query: 315 KYKSPGNAF-----VEGDASSASYFVAGAA--VTGGTVTVEGCGTSSLQGDVKFAEVLEK 367
Y+ N V+ +A + + F +T V T L L+
Sbjct: 242 PYE---NCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDH 293
Query: 368 MGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLA--VVALFADGPTAIR 425
+T E ++ L+ +D +P +T +++ A +IR
Sbjct: 294 HSMTLTPDE-VKSLL-----------LKYLDCRPQDLPREVLTTNPRRLSIIA---ESIR 338
Query: 426 DGM 428
DG+
Sbjct: 339 DGL 341
Score = 41.4 bits (96), Expect = 6e-04
Identities = 71/460 (15%), Positives = 131/460 (28%), Gaps = 159/460 (34%)
Query: 29 VSAISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASEIVLQPIREI 88
+S I + + + DRL N+N V +V + K + L +R
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQ-ALLELRPA 150
Query: 89 SGTVTL---PGS-KSLSNRILLLAALSEGTTV-----------VDNLLSSEDIHHMLDAL 133
V + GS K+ + L + N S E + L+ L
Sbjct: 151 KN-VLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---LEML 202
Query: 134 KKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNL 193
+KL ++ ++ + K + I+ L R L +
Sbjct: 203 QKLLYQIDPNWT------SRSDHSSNI-KLRIHSIQAEL-------RRLLK-------SK 241
Query: 194 SY-----ILDGVPRMRERPIGD--------LV-TGLKQLGADVDCILGTNCPPVRING-K 238
Y +L V + + L+ T KQ+ D + + ++
Sbjct: 242 PYENCLLVLLNV---QNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHS 295
Query: 239 GGLPGGKVKLSGKLSSQYL----TAL----LMAAPLALG--------------NVEIEII 276
L +VK L +YL L L P L N +
Sbjct: 296 MTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 277 DKLISVPYVEMTL---------KLMERFGVFVEHSD--------SW-------DRFFIQG 312
DKL ++ +E +L K+ +R VF + W +
Sbjct: 353 DKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 313 GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKF---------AE 363
KY + VE ++ + S+ ++K
Sbjct: 411 LHKY-----SLVEKQPKESTISI-----------------PSIYLELKVKLENEYALHRS 448
Query: 364 VLEKMGAKVTWTENSVTVTGPPRDPY-----GRKHLRAVD 398
+++ T+ + + P D Y G HL+ ++
Sbjct: 449 IVDHYNIPKTFDSDDLIP--PYLDQYFYSHIGH-HLKNIE 485
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 54.8 bits (133), Expect = 2e-08
Identities = 78/350 (22%), Positives = 124/350 (35%), Gaps = 101/350 (28%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+ G VT+ G+K N L +L A L+E + N+ +DI + L L +
Sbjct: 10 TRLQGEVTISGAK---NAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLT--QLGTKV 64
Query: 143 DFAMKRAI----VEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILD 198
+ I V + L K I LG PL A
Sbjct: 65 ERXGSVWIDASNVNNFSAPYDLVKTMRASI-WALG-------PLVA-------------- 102
Query: 199 GVPRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244
R + RP+ DL + GL++LGA++ G V+ + G L G
Sbjct: 103 ---RFGQGQVSLPGGCAIGARPV-DLHIFGLEKLGAEIKLEEGY----VKASVNGRLKGA 154
Query: 245 KVKLSGKLSSQYLTA---LLMAAPLALG-----NV--EIEIIDKLISVPYVEMTLKLMER 294
+ + K+S + A ++ AA LA G N E EI+D + L +
Sbjct: 155 HIVMD-KVS---VGATVTIMSAATLAEGTTIIENAAREPEIVD-TANF------LVAL-- 201
Query: 295 FGVFVEHSDSWDRFFIQG-----GQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEG 349
G + + DR I+G G Y+ V D F+ AA++GG +
Sbjct: 202 -GAKISGQGT-DRITIEGVERLGGGVYR------VLPDRIETGTFLVAAAISGGKIVCRN 253
Query: 350 CGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
+L L + GA + E+ +++ K +AV V
Sbjct: 254 AQPDTLD---AVLAKLREAGADIETGEDWISLDMHG------KRPKAVTV 294
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 54.0 bits (131), Expect = 4e-08
Identities = 62/359 (17%), Positives = 110/359 (30%), Gaps = 122/359 (33%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA--LSEGTTVVDNLLSSEDIHHMLDALKKLGLNV-- 140
+ ++G V + G+K N L ++ A L+E + N+ D+ + L L++LG +
Sbjct: 19 KPLTGKVKISGAK---NAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLRELGAELEF 75
Query: 141 EEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGV 200
+ + + ++ + L LG PL
Sbjct: 76 LNNTVFINPSINSFITNQEIIRRMRASV-LSLG-------PLLG---------------- 111
Query: 201 PRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGKG-GLPGGK 245
R RPI D + K+ GADV+ G +
Sbjct: 112 -RFGRAVVGLPGGCSIGARPI-DQHLKFFKEAGADVEVREG------YVYVNLKEKRRVH 163
Query: 246 VKLSGKLSSQYLTA---LLMAAPLALG-----NV--EIEIIDK---LISVPYVEM----- 287
K ++ +T L+ N+ E E++D L M
Sbjct: 164 FKFD-LVT---VTGTENALLYLASVPEESILENIALEPEVMDLIEVLKK-----MGAHVK 214
Query: 288 ---TLKLMERFGV----FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAV 340
++ G HS DR I+ G ++ V A +
Sbjct: 215 VEGRSAYVK--GSENLKGFTHSVIPDR--IEAG------------------TFMVG-AVL 251
Query: 341 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
T G + +E + L+ E L+ +G +V ++ V LRA D+
Sbjct: 252 TDGEILLENARINHLR---AVVEKLKLIGGEVVEENGNLRVFRKES-------LRACDI 300
Score = 30.1 bits (69), Expect = 1.3
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 306 DRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVK-FAEV 364
D F I+GG+ G + G ++A + +T T+ L DV+ +
Sbjct: 11 DYFVIRGGKPLT--GKVKISGAKNAALPIMFATILTEEPCTITNV--PDLL-DVRNTLLL 65
Query: 365 LEKMGAKVTWTENSVTVTGPPRD---PYGR-KHLRA 396
L ++GA++ + N+V + + +RA
Sbjct: 66 LRELGAELEFLNNTVFINPSINSFITNQEIIRRMRA 101
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 49.4 bits (119), Expect = 1e-06
Identities = 87/353 (24%), Positives = 137/353 (38%), Gaps = 107/353 (30%)
Query: 86 REISGTVTLPGSKSLSNRIL-LLAA---LSEGTTVVDNLLSSEDIHHMLDALKKLGLNVE 141
++++G+V + G+K N +L ++AA S+GT+V+ N+ + D+ + + LK LN +
Sbjct: 34 KQLNGSVKMEGAK---NAVLPVIAATLLASKGTSVLKNVPNLSDVFTINEVLK--YLNAD 88
Query: 142 EDFAMKRAIVEGCGGL-----FPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYI 196
F V+ G + F ++ I + +G PL A
Sbjct: 89 VSFVNDEVTVDATGEITSDAPFEYVRKMRASI-VVMG-------PLLA------------ 128
Query: 197 LDGVPRMRE-------------RPIGDL-VTGLKQLGADVDCILGTNCPPVRINGK-GGL 241
R RP+ DL + G + +GA V G I L
Sbjct: 129 -----RTGSARVALPGGCAIGSRPV-DLHLKGFEAMGAVVKIENG------YIEATAEKL 176
Query: 242 PGGKVKLSGKLSSQYL-----TA---LLMAAPLALG-----NV--EIEIIDKLISVPYVE 286
G KV YL A ++MAA LA G NV E EI+D +
Sbjct: 177 VGAKV---------YLDFPSVGATQNIMMAATLAEGTTVIENVAREPEIVD-------LA 220
Query: 287 MTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVT 346
L M G V + + + I+G ++ + D A F+ AA+TGG V
Sbjct: 221 NFLNQM---GARVIGAGT-EVIRIEGVKELT-ATEHSIIPDRIEAGTFMIAAAITGGNVL 275
Query: 347 VEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDV 399
+E + LE+MG ++ EN + V GP + L+AVDV
Sbjct: 276 IEDAVPEHISS---LIAKLEEMGVQIIEEENGIRVIGPDK-------LKAVDV 318
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 36.0 bits (82), Expect = 0.025
Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 23/149 (15%)
Query: 26 PKSVS------AISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASE 79
P ++ SFRS+ R SW + T + VG + K+SK E
Sbjct: 178 PANIPDEELKRVASFRSRGRIPVLSW------IHPESQATITRCSQPMVGVSGKRSKEDE 231
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLA--ALSEGTTVVDNL-------LSSEDIHHML 130
LQ I + + + +A A G D L +IH M
Sbjct: 232 KYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMR 291
Query: 131 DALKKL--GLNVEEDFAMKRAIVEGCGGL 157
++L+KL + + + +E L
Sbjct: 292 ESLRKLKEIVYPNIEETHWLSNLESTHWL 320
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 34.2 bits (77), Expect = 0.095
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 21/126 (16%)
Query: 26 PKSVS------AISFRSQSRGCSSSWGLRYNDRLGNNNTVRTVRASASVGTAEKQSKASE 79
P ++ SFRS+ R SW + T + VG + K+SK E
Sbjct: 250 PANIPDEELKRVASFRSRGRIPVLSW------IHPESQATITRCSQPMVGVSGKRSKEDE 303
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLA--ALSEGTTVVDNL-------LSSEDIHHML 130
LQ I + + + +A A G D L +IH M
Sbjct: 304 KYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHVMR 363
Query: 131 DALKKL 136
++L+KL
Sbjct: 364 ESLRKL 369
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.42
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 12 QNTRVFTNQTKLQKPKSVSAISFRSQ 37
Q + KL S A++ ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKAT 45
Score = 30.3 bits (67), Expect = 0.71
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 391 RKHLRAVDVNMNKM--PDVAMTLAVVA 415
++ L+ + ++ K+ D A LA+ A
Sbjct: 19 KQALKKLQASL-KLYADDSAPALAIKA 44
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM,
iron, trans ION transport, proteobacteria, iron
transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica}
SCOP: e.62.1.1 PDB: 2j0r_A*
Length = 345
Score = 30.7 bits (69), Expect = 0.85
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V D A + L +A+Q+ EI +F+GN
Sbjct: 191 AMTDVHEFFQLLKRNNLTRQQAFRAVGNDLA-YQVDNSSLTQLLNIAQQEQNEIMIFVGN 249
Query: 175 AG 176
G
Sbjct: 250 RG 251
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase,
structural repeat; HET: HEM; 1.45A {Escherichia coli}
SCOP: e.62.1.1 PDB: 1u9t_A
Length = 354
Score = 30.3 bits (68), Expect = 1.0
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V +D A + + A+Q EI +F+GN
Sbjct: 200 AMTDVHQFFTLLKRHNLTRQQAFNLVADDLA-CKVSNSALAQILESAQQDGNEIMVFVGN 258
Query: 175 AG 176
G
Sbjct: 259 RG 260
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 30.5 bits (69), Expect = 1.2
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 259 ALLMAAPLALGNVEIEI---IDKLISVPYVEMTLKLMERFGVF---VEHSDSWDRFF--- 309
+ AP I ID+ PY + E G + HS +F
Sbjct: 195 PAIQIAPTFFERKRCLIPAAIDQD---PYWRLQRDFAESLGYYKTAALHS----KFVPSL 247
Query: 310 --IQGGQKYKSPGNA-FVEGDASSASYFVAGAAVTGGTVTVE 348
+ G P A ++ V +TGG T++
Sbjct: 248 TSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLK 289
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal;
HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1
d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A*
2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A*
1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Length = 727
Score = 30.2 bits (67), Expect = 1.5
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 364 VLEKMGAKVTWTENSVTVTG 383
L++ GA V W + + T
Sbjct: 13 TLKEFGADVQWDDYAQLFTL 32
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET:
DNA; 2.00A {Bacillus subtilis}
Length = 135
Score = 29.1 bits (65), Expect = 1.6
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 102 NRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEE 142
+ + +GT+ + NLL L K+LGLN E
Sbjct: 2 KKQQFIDMQEQGTSTIPNLL--------LTHYKQLGLNETE 34
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.8 bits (67), Expect = 1.6
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 341 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVN 400
G V G S A L K G+ + ++ + P DP R
Sbjct: 165 NKGQYVVIGGNESGFD----AAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRL 220
Query: 401 MNKMP 405
N +
Sbjct: 221 GNVIK 225
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.6 bits (66), Expect = 2.6
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 103 RILLLAALSEGTTVVDNL--LSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160
R + ++ + T + L ++ + L+A E++ + +E G P
Sbjct: 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PA 331
Query: 161 A 161
Sbjct: 332 T 332
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 29.4 bits (66), Expect = 2.8
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 327 DASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPR 386
+ + A G T+T++G G S +G V F +W + + V P
Sbjct: 497 ATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAV 556
Query: 387 DPYGRK 392
Sbjct: 557 AGGNYN 562
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 29.2 bits (65), Expect = 3.3
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 339 AVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVD 398
A+ G T TVEG G + Q V+ + +E G +V + V P G L V+
Sbjct: 616 ALEGCTFTVEGAGLTEEQKTVEIPDPVE-AGEEVKVRMDLV----PLHM--GLHKL-VVN 667
Query: 399 VNMNKMPDVAMTLAVV 414
+K+ V V+
Sbjct: 668 FESDKLKAVKGFRNVI 683
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain,
proteolytic fragment, PSI, structural genomics; 1.42A
{Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A*
3omg_A* 2o4x_A 2e6n_A 2o4x_B
Length = 246
Score = 28.1 bits (62), Expect = 5.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 282 VPYVEMTLKLMERFGVFVEHSDSWDRFFIQ 311
+P +E + VFV F++Q
Sbjct: 6 MPVLEEKERSASYKPVFVTEITDDLHFYVQ 35
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 28.7 bits (63), Expect = 5.1
Identities = 16/111 (14%), Positives = 27/111 (24%), Gaps = 16/111 (14%)
Query: 295 FGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSS 354
G + +WD + G + G D + S A + +
Sbjct: 860 PGTNINLEHAWDSVIVTDG---RFDGAGVYAPDGTRTSAVSLLAVPEARQIVTRVPKAAL 916
Query: 355 LQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMP 405
D A + SV + G G ++R V
Sbjct: 917 GGLDPATARM-------------SVAMFGNAESGEGIGNVRPVYDGAYWEA 954
>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural
genomics consortium, SGC; 1.92A {Plasmodium falciparum}
PDB: 3pr3_A
Length = 597
Score = 28.1 bits (63), Expect = 7.3
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 359 VKFAEVLEKM--GAKVTWTEN-SV--TVTGPPRDPYGRKHLRAVDVN-MNKMPDVAMTLA 412
V+ + +EK G KV TEN SV T R P + + + ++ N + DV L
Sbjct: 88 VELKKKVEKTFMGEKVNMTENRSVLHTAL---RIPIEKINTHKIIIDNKNVLEDVHGVLK 144
Query: 413 VVALFADGPTAIRDG 427
+ ++D IR+G
Sbjct: 145 KIEKYSD---DIRNG 156
>2qng_A Uncharacterized protein SAV2460; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.40A {Streptomyces
avermitilis}
Length = 199
Score = 27.2 bits (60), Expect = 8.9
Identities = 5/54 (9%), Positives = 17/54 (31%)
Query: 376 ENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGMV 429
+ ++ + +D G + + +N++ + V + V
Sbjct: 79 DGTIYLNRDSKDGKGFGWDEVMTLELNRLDSRYARVVVGVVIQQRDAHRTFVGV 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,499,710
Number of extensions: 411774
Number of successful extensions: 1387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1313
Number of HSP's successfully gapped: 71
Length of query: 429
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 333
Effective length of database: 4,021,377
Effective search space: 1339118541
Effective search space used: 1339118541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)