RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014155
(429 letters)
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 174 bits (440), Expect = 2e-50
Identities = 156/349 (44%), Positives = 211/349 (60%), Gaps = 17/349 (4%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+ LQPI + GT+ LPGSKS+SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++
Sbjct: 4 LTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVS 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
R + G GG + L G+ +L G
Sbjct: 64 YTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC------LGSNDIVLTG 117
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
PRM+ERPIG LV L+ GA + + N PP+R+ +GG GG V + G +SSQ+LTA
Sbjct: 118 EPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTA 175
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
LLM APLA + I I L+S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SP
Sbjct: 176 LLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSP 234
Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
G VEGDASSASYF+A AA+ GGTV V G G +S+QGD++FA+VLEKMGA + W ++
Sbjct: 235 GTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDD-- 292
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAIRDGM 428
R L A+D++MN +PD AMT+A ALFA G T +R+
Sbjct: 293 ------YISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIY 335
Score = 40.0 bits (92), Expect = 4e-04
Identities = 48/304 (15%), Positives = 87/304 (28%), Gaps = 25/304 (8%)
Query: 125 DIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTA 184
I H++DAL+ G + + GG G + + L
Sbjct: 125 PIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVS-----SQFLTALLMT 179
Query: 185 AVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGG 244
A A I + + I + +K G +++ G
Sbjct: 180 APLAPEDT--VIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVK----GGQSYQS 233
Query: 245 KVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDS 304
+ + + L AA + G V++ I + + L + D
Sbjct: 234 PGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDY 293
Query: 305 WDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEV 364
+ + + A G T + D FA
Sbjct: 294 ISCTRGELNAIDMDMNHIPDAAM----TIATAALFAKGTTTLRNIYNWRVKETDRLFAMA 349
Query: 365 --LEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPT 422
L K+GA+V + + +T P + L ++ +AM ++VAL +D P
Sbjct: 350 TELRKVGAEVEEGHDYIRITPPEK-------LNFAEIATYNDHRMAMCFSLVAL-SDTPV 401
Query: 423 AIRD 426
I D
Sbjct: 402 TILD 405
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 162 bits (411), Expect = 4e-46
Identities = 73/335 (21%), Positives = 142/335 (42%), Gaps = 21/335 (6%)
Query: 84 PIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEED 143
IR + G + +PG KS+S+R ++ +L+EG T V ++L ED+ + + LG+ +E+
Sbjct: 6 NIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDK 65
Query: 144 FAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRM 203
V+G G A Q + GN+GT++R ++ + A + D +
Sbjct: 66 --DGVITVQGVGMAGLKAPQNALNM----GNSGTSIRLISGVLAGADFEVEMFGD--DSL 117
Query: 204 RERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMA 263
+RP+ + LK++G + + PP+R+ G L +L S+Q +AL+ A
Sbjct: 118 SKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELP-IASAQVKSALMFA 176
Query: 264 APLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAF 323
A A G I + T ++++FG S + +QG QK
Sbjct: 177 ALQAKGESVIIEKE-----YTRNHTEDMLQQFG--GHLSVDGKKITVQGPQKLT-GQKVV 228
Query: 324 VEGDASSASYFVAGAAVTGGT-VTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVT 382
V GD SSA++++ + + + ++ G + + + ++T +
Sbjct: 229 VPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAK-- 286
Query: 383 GPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALF 417
L+ ++ +P + L ++AL
Sbjct: 287 -SATLIVESSDLKGTEICGALIPRLIDELPIIALL 320
Score = 52.6 bits (125), Expect = 4e-08
Identities = 56/321 (17%), Positives = 102/321 (31%), Gaps = 36/321 (11%)
Query: 116 VVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNA 175
D+ LS + + LKK+G+++ + G + EL + +A
Sbjct: 112 FGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNL----RPIHYELPIASA 167
Query: 176 GTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRI 235
+ AA+ A G + I++ L+Q G + + + +
Sbjct: 168 QVKSALMFAALQAKGES--VIIEKEYTRNHTEDM-----LQQFGGHLSV----DGKKITV 216
Query: 236 NGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERF 295
G L G KV + G +SS A + A L N + + + I+ + + ++
Sbjct: 217 QGPQKLTGQKVVVPGDISS---AAFWLVAGLIAPNSRLVLQNVGINETRTGI-IDVIRAM 272
Query: 296 GVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEG----CG 351
G +E ++ S A + +G
Sbjct: 273 GGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKD 332
Query: 352 TSSLQGDVK-----FAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD 406
L+ A+ L MGA +T T + + + G L VN
Sbjct: 333 AEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSA-------LHGARVNTFGDHR 385
Query: 407 VAMTLAVVAL-FADGPTAIRD 426
+ M A+ AL ADG +
Sbjct: 386 IGMMTAIAALLVADGEVELDR 406
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 216
Score = 135 bits (341), Expect = 3e-38
Identities = 95/225 (42%), Positives = 128/225 (56%), Gaps = 9/225 (4%)
Query: 101 SNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPL 160
SNR LLLAAL+ G TV+ NLL S+D+ HML+AL LG++ R + G GG
Sbjct: 1 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLH- 59
Query: 161 AKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGA 220
E L L A G+ +L G PRM+ERPIG LV L+ GA
Sbjct: 60 -----AEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGA 114
Query: 221 DVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLI 280
+ + N PP+R+ +GG GG V + G +SSQ+LTALLM APLA + I I L+
Sbjct: 115 KITYLEQENYPPLRL--QGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLV 172
Query: 281 SVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVE 325
S PY+++TL LM+ FGV +E+ + +F ++GGQ Y+SPG VE
Sbjct: 173 SKPYIDITLNLMKTFGVEIENQH-YQQFVVKGGQSYQSPGTYLVE 216
Score = 31.9 bits (71), Expect = 0.095
Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 10/194 (5%)
Query: 196 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQ 255
+L + + + ++ L LG + I G L ++
Sbjct: 16 VLTNLLDSDD--VRHMLNALTALGVSYT-LSADRTRCEIIGNGGPLHAEGALELFLGNAG 72
Query: 256 YLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQK 315
L AA N + + + + + + G + + + + ++
Sbjct: 73 TAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGG 132
Query: 316 YKSPGNAFVEGDASS----ASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAK 371
+ GN V+G SS A A A + ++G S D+ +++ G +
Sbjct: 133 FT-GGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDI-TLNLMKTFGVE 190
Query: 372 VTWTE-NSVTVTGP 384
+ V G
Sbjct: 191 IENQHYQQFVVKGG 204
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 131 bits (330), Expect = 9e-35
Identities = 70/345 (20%), Positives = 123/345 (35%), Gaps = 31/345 (8%)
Query: 80 IVLQPIREISGTVTLPGSKSLSNRILLLAALSEGTTVVDNLLSSEDIHHMLDALKKLGLN 139
+Q + G VT+ G+K+ + IL A L+E + N+ +DI + L +LG
Sbjct: 4 FRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTK 63
Query: 140 VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGTAMRPLTAAVTAAGGNLSYILDG 199
VE D ++ A +L + + A G L G
Sbjct: 64 VERD---GSVWIDASNVNNFSAPY-----DLVKTMRASIWALGP--LVARFGQGQVSLPG 113
Query: 200 VPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINGKGGLPGGKVKLSGKLSSQYLTA 259
+ RP+ + GL++LGA++ G V G L G + K+S
Sbjct: 114 GCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASV----NGRLKGAHIV-MDKVSVGATVT 168
Query: 260 LLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHSDSWDRFFIQGGQKYKSP 319
++ AA LA G II+ P + T + G + + R I+G ++
Sbjct: 169 IMSAATLAEGT---TIIENAAREPEIVDTANFLVALGAKISGQGTD-RITIEGVERLGGG 224
Query: 320 GNAFVEGDASSASYFVAGAAVTGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSV 379
+ + ++ VA AA++GG + +L L + GA + E+ +
Sbjct: 225 VYRVLPDRIETGTFLVA-AAISGGKIVCRNAQPDTLD---AVLAKLREAGADIETGEDWI 280
Query: 380 TVTGPPRDPYGRKHLRAVDVNMNKMPDVAMTLAVVALFADGPTAI 424
++ + P V + P A + A F
Sbjct: 281 SLDMHGKRPKA--------VTVRTAPHPAFPTDMQAQFTLLNLVA 317
Score = 49.5 bits (117), Expect = 4e-07
Identities = 49/313 (15%), Positives = 95/313 (30%), Gaps = 39/313 (12%)
Query: 118 DNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGNAGT 177
+ + + + L+KLG ++ + +A V G + + I + + G
Sbjct: 114 GCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNG--------RLKGAHIVMDKVSVGA 165
Query: 178 AMRPLTAAVTAAGGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRING 237
+ ++AA A G + R + T + G + I G
Sbjct: 166 TVTIMSAATLAEG-------TTIIENAAREPEIVDTANFLVALGAKIS-GQGTDRITIEG 217
Query: 238 KGGLPGGKVKLSGKLSSQYLTALLMAAPLALGNVEIEIIDKLISVPYVEMTLKLMERFGV 297
L GG ++ L + T + A G +I+ + ++ L + G
Sbjct: 218 VERLGGGVYRV---LPDRIETGTFLVAAAISGG---KIVCRNAQPDTLDAVLAKLREAGA 271
Query: 298 FVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSA--SYFVAGAAVTGGTVTVEGCGTSSL 355
+E + W + G + + + F V GT + +
Sbjct: 272 DIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFEN- 330
Query: 356 QGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDPYGRKHLRAVDVNMNKMPD--VAMTLAV 413
L +MGA N+V G + L V D + +L +
Sbjct: 331 --RFMHVPELIRMGAHAEIESNTVICHGVEK-------LSGAQV---MATDLRASASLVL 378
Query: 414 VALFADGPTAIRD 426
A+G T +
Sbjct: 379 AGCIAEGTTVVDR 391
Score = 28.7 bits (63), Expect = 1.4
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 292 MERFGVFVEHSDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFVAGAAVTGGTVTVEGCG 351
+ R G E + G +K G + D +++ V + GT V+
Sbjct: 338 LIRMGAHAEIES--NTVICHGVEKLS--GAQVMATDLRASASLVLAGCIAEGTTVVDRIY 393
Query: 352 TSSLQGDVKFAEVLEKMGAKVTWTE 376
+G + + L +GA + +
Sbjct: 394 HID-RGYERIEDKLRALGANIERVK 417
Score = 28.3 bits (62), Expect = 2.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 88 ISGTVTLPGSKSLSN--RI---LLLAAL-SEGTTVVDNLL----SSEDIHHMLDALKKLG 137
G L G++ ++ R L+LA +EGTTVVD + E I D L+ LG
Sbjct: 354 CHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIE---DKLRALG 410
Query: 138 LNVE 141
N+E
Sbjct: 411 ANIE 414
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 29.7 bits (67), Expect = 0.72
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 122 SSEDIHHMLDALKKLGLN-------VEEDFAMKRAIVEGCGGLFPLAKQQTGEIELFLGN 174
+ D+H LK+ L V +D A + + A+Q EI +F+GN
Sbjct: 188 AMTDVHQFFTLLKRHNLTRQQAFNLVADDLA-CKVSNSALAQILESAQQDGNEIMVFVGN 246
Query: 175 AGTAMRPLTAAVTAA 189
G ++ T V
Sbjct: 247 RG-CVQIFTGVVEKV 260
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase,
domain D {Bacillus circulans, different strains [TaxId:
1397]}
Length = 87
Score = 26.9 bits (59), Expect = 1.5
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 342 GGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 385
G T+T++G G S +G V F +W + + V P
Sbjct: 16 GVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPA 59
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId:
727]}
Length = 160
Score = 27.4 bits (60), Expect = 2.3
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 81 VLQPIREISGTVTLPGSKSLSNRILLLAALSE 112
V+ P+ EI+ + LP S+ ++ L+ ++
Sbjct: 124 VIVPLFEIASDLVLPNSQIITE---LVKQFAD 152
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710
{Thermotoga maritima [TaxId: 2336]}
Length = 139
Score = 27.3 bits (60), Expect = 2.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 121 LSSEDIHHMLDALKKLGLNVEEDF 144
L E +LD LK+L +E +F
Sbjct: 116 LGKEKSSKILDYLKELKGVMERNF 139
>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
[TaxId: 51453]}
Length = 434
Score = 27.5 bits (61), Expect = 3.0
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 302 SDSWDRFFIQGGQKYKSPGNAF--VEGDASSASYFVAGAAVTGGTVTVEGCGTSSL 355
S + +R+++Q G ++ P G+ + Y A A GG+ + G +
Sbjct: 297 SGAINRYYVQNGVTFQQPNAELGSYSGNELNDDYCTAEEAEFGGSSFSDKGGLTQF 352
>d1d6za4 d.82.1.1 (A:7-90) Copper amine oxidase, domain N
{Escherichia coli [TaxId: 562]}
Length = 84
Score = 25.6 bits (56), Expect = 3.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 359 VKFAEVLEKMGAKVTWTENSVTVT 382
V + L++ GA V W + + T
Sbjct: 2 VPMDKTLKEFGADVQWDDYAQLFT 25
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 27.3 bits (60), Expect = 4.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 113 GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA 161
G +NLL+ + D+LK +N+ + + G GGL LA
Sbjct: 71 GRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLA 119
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 26.8 bits (58), Expect = 4.8
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 314 QKYKSPGNAFVEGDASSASYFVAGAAV---TGGTVTVEGCGTSSLQGDVKFAEVLEKMGA 370
Q Y + N + SY V G V + + G G S + D+ +
Sbjct: 5 QDYLNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADL-IRDFSLTWNW 63
Query: 371 KVTW 374
+V
Sbjct: 64 EVEV 67
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus
faecalis [TaxId: 1351]}
Length = 144
Score = 26.2 bits (57), Expect = 5.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 121 LSSEDIHHMLDALKKLGLNVEEDF 144
LS +I + D L ++ NV ED+
Sbjct: 115 LSEVEISQLADYLVRMRKNVSEDW 138
>d1q9ha_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Talaromyces emersonii [TaxId:
68825]}
Length = 435
Score = 26.4 bits (58), Expect = 7.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 307 RFFIQGGQKYKSPGNAF--VEGDASSASYFVAGAAVTGGT 344
RF+IQ P + V G++ + + A G T
Sbjct: 305 RFYIQNSNVIPQPNSDISGVTGNSITTEFCTAQKQAFGDT 344
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 26.5 bits (58), Expect = 8.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 113 GTTVVDNLLSSEDIHHMLDALKKLGLNVEEDFAMKRAIVEGCGGLFPLA 161
G T+ + +++ + +A +LGL++EE ++ G GGL LA
Sbjct: 81 GRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLA 129
>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase,
domain D {Thermoanaerobacterium [TaxId: 28895]}
Length = 83
Score = 24.5 bits (53), Expect = 9.6
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 341 TGGTVTVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPP 385
G T+T++G G + G V F G V+W + V V P
Sbjct: 16 AGQTITIDGRGFGTTSGQVLFGST---AGTIVSWDDTEVKVKVPS 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,516,075
Number of extensions: 70525
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 23
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)