BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014157
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 159/336 (47%), Gaps = 47/336 (13%)
Query: 98 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSAS 157
+ F+ +H Y+L+P S K+V D L VK+AF L G+ APLWD K FVG+L+ +
Sbjct: 29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 158 DFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
DFI IL + S L + ELE H I W+E YL DS +PLV PN +
Sbjct: 89 DFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNAS 136
Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 276
L D ++ N++ +P+I S + L+I + ILK LKL
Sbjct: 137 LFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKL 177
Query: 277 PICAIPVGTWVPKIGEP----NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLL 332
I P ++ K E +AM+R ++P+VD+ ++
Sbjct: 178 FITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237
Query: 333 DIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKV 392
DIY + D+ LA +K Y ++++S + +ALQ + + C +TL +
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLEAI 287
Query: 393 MERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
+ RL V RLV+V+ V+GIVSLSDI + L+
Sbjct: 288 INRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 44/353 (12%)
Query: 80 EAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISM 139
++ E++S + Q++ + FL++ T+Y++LP S +++ LD L VK++ ++L + I
Sbjct: 7 DSQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVS 65
Query: 140 APLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQI 197
APLWD +RF G+L+ +DFI +++ + SN + EL + + K+ + L Q+
Sbjct: 66 APLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQL 122
Query: 198 DSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG-- 255
D+ RPL A K+L + +P+I QD + + ++ L+
Sbjct: 123 DTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYR 170
Query: 256 ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXX 315
ILK V R LK+PI + + I + N + M P
Sbjct: 171 ILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLT 217
Query: 316 XXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D +
Sbjct: 218 QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF----- 269
Query: 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
+ C +D L +M+ + V R +V+ R+ G+++LSDI K++L
Sbjct: 270 --EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 166/352 (47%), Gaps = 44/352 (12%)
Query: 81 AAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMA 140
+ E++S + Q++ + FL++ T+Y++LP S +++ LD L VK++ ++L + I A
Sbjct: 1 SQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSA 59
Query: 141 PLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQID 198
PLWD +RF G+L+ +DFI +++ + SN + EL + + K+ + L Q+D
Sbjct: 60 PLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQLD 116
Query: 199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG--I 256
+ RPL A K+L + +P+I QD + + ++ L+ I
Sbjct: 117 TASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYRI 164
Query: 257 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXX 316
LK V R LK+PI + + I + N + M P
Sbjct: 165 LKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLTQ 211
Query: 317 XXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D +
Sbjct: 212 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF------ 262
Query: 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
+ C +D L +M+ + V R +V+ R+ G+++LSDI K++L
Sbjct: 263 -EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 150/332 (45%), Gaps = 32/332 (9%)
Query: 97 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 156
+ F+ + T+Y++LP S +++ D+ L VK + +L I APLWD +F G+L+
Sbjct: 14 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 157 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
+DF+ +++ S I+ + + R+++ A P +Y P +
Sbjct: 74 ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 126
Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 276
L D + + +P+I + GS ++ + + ILK + +C + +L++
Sbjct: 127 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 181
Query: 277 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 336
P+ + +GTW LA ++PIV+ +LL++Y
Sbjct: 182 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 232
Query: 337 RSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 396
D+ L +D Y++++LS + +AL ++ C +D L + + +
Sbjct: 233 SVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDGIFDAI 282
Query: 397 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
+ V RL +V+ K +EGI+SL+DI +++
Sbjct: 283 KHSRVHRLFVVDENLK-LEGILSLADILNYII 313
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 150/332 (45%), Gaps = 32/332 (9%)
Query: 97 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 156
+ F+ + T+Y++LP S +++ D+ L VK + +L I APLWD +F G+L+
Sbjct: 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 157 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
+DF+ +++ S I+ + + R+++ A P +Y P +
Sbjct: 75 ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 127
Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 276
L D + + +P+I + GS ++ + + ILK + +C + +L++
Sbjct: 128 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 182
Query: 277 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 336
P+ + +GTW LA ++PIV+ +LL++Y
Sbjct: 183 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 233
Query: 337 RSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 396
D+ L +D Y++++LS + +AL ++ C +D L + + +
Sbjct: 234 SVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDGIFDAI 283
Query: 397 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
+ V RL +V+ K +EGI+SL+DI +++
Sbjct: 284 KHSRVHRLFVVDENLK-LEGILSLADILNYII 314
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 11/108 (10%)
Query: 321 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 380
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
C +TL ++ RL V RLV+V+ V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHRLVVVDENDV-VKGIVSLSDILQALV 150
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 11/108 (10%)
Query: 321 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 380
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
C +TL ++ RL V +LV+V+ V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHQLVVVDEND-VVKGIVSLSDILQALV 150
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 298 LAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEM 357
+AM+R ++P+VD+ ++DIY + D+ LA +K Y ++++S
Sbjct: 31 IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS-- 88
Query: 358 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGI 417
+ +ALQ + Y L+ C +TL ++ RL V LV+V+ + V+GI
Sbjct: 89 -VTKALQ-HRSHYFEGVLK------CYLHETLETIINRLVEAEVHGLVVVDE-NDVVKGI 139
Query: 418 VSLSDIFKFLL 428
VSLSDI + L+
Sbjct: 140 VSLSDILQALV 150
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 321 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 380
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D + +
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF-------EGV 93
Query: 381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
C +D L +M+ + V R +V+ R+ G+++LSDI K++L
Sbjct: 94 YTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 321 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 380
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D + +
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALXRRSDDF-------EGV 93
Query: 381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
C +D L + + + V R +V+ R+ G+++LSDI K++L
Sbjct: 94 YTCTKNDKLSTIXDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
QYKF VDG+W HD +P ++S+ G VN ++ + +F
Sbjct: 57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
QYKF VDG+W HD +P ++S+ G VN ++ + +F
Sbjct: 57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
QYKF VDG+W HD +P ++S+ G +N ++ + +F
Sbjct: 57 QYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF 93
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 10 QYKFCVDGEWRHDEHQPFI--SSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAF 67
+YK+ +DGEW H+E +PFI + + N + +P + G + S + ++ E
Sbjct: 220 EYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEER 279
Query: 68 QRLVQI 73
+L+Q
Sbjct: 280 SKLIQF 285
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 125 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 184
V +A +L E I+ P+ D + VG++S D +L L + GS TE + S
Sbjct: 26 VDEALELLVENRITGFPVID-EDWKLVGLVSDYD-LLALDSI--SGSGRTENSMFPEVDS 81
Query: 185 AWKEGKAYLNRQIDSHGKAF-----PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 239
WK A ++GK P PLV NL+D A+ +L + +P++ S
Sbjct: 82 TWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE-EKTNLEDAAKILLETKYRRLPVVDS-- 138
Query: 240 QDGSFPQLLHIASLSGILKCVCRYFR 265
DG +L+ I + +++ + R
Sbjct: 139 -DG---KLVGIITRGNVVRAALQIKR 160
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
++++ P+ T+ K + + RRL +V AG+ +V GI++ DI F+ G
Sbjct: 10 QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGG 63
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 125 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 184
+K + G P+ S+ R VG+++++DFI +L GS+ ++T +
Sbjct: 167 LKDVARTMVRNGFRRLPV--VSEGRLVGIITSTDFIKLL------GSDWAFNHMQTGNV- 217
Query: 185 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF 244
+ N +++ + R ++ A D LK +A ++ N++ +P++ + +
Sbjct: 218 -----REITNVRME---EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLR---- 265
Query: 245 PQLLHIASLSGIL--KCVCRYF 264
+ GI+ K V +YF
Sbjct: 266 --------IKGIITEKDVLKYF 279
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 194 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 235
N ID + R ++ A P + LKDVAR ++ N +P++
Sbjct: 147 NEVIDDY---ITRDVIVATPGERLKDVARTMVRNGFRRLPVV 185
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 125 VKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 184
V A +L E+ ++ P+ D VGV+S D +L L + N + L S
Sbjct: 25 VDDALELLVEKKVTGLPVID-DNWTLVGVVSDYD-LLALDSISGRSQN--DTNLFPDVDS 80
Query: 185 AWKEGKAYLNRQIDSHGKAF-----PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 239
WK ++GK P PLV NL+D AR +L + +P++ +
Sbjct: 81 TWKTFNELQKLISKTYGKVVGDLXTPSPLVVRDST-NLEDAARLLLETKFRRLPVVDA-- 137
Query: 240 QDGSFPQLLHIASLSGILKCVCRYFRHCSS 269
DG +L+ I + +++ + R+ S
Sbjct: 138 -DG---KLIGILTRGNVVRAALQIKRNADS 163
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 151 VGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSH-GKAFPRPLV 209
+GV+ SDF + +LGN + + + A+K+GK + I SH G+A + L+
Sbjct: 41 IGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLI 100
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 36 NTVLLATEPNFM-HGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSR 94
NT+ E F+ GI G P+ + D +AF+ + +I +L + + E LQ ++
Sbjct: 345 NTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVAKIISLALKNSKD---EEKLQQAK 401
Query: 95 HRVSVFLSTHTAYE 108
RV+ + + Y+
Sbjct: 402 ERVAKLTAEYPLYQ 415
>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
pdb|3JTF|B Chain B, The Cbs Domain Pair Structure Of A Magnesium And Cobalt
Efflux Protein From Bordetella Parapertussis In Complex
With Amp
Length = 129
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 119 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFI-------LILRELGNHGS 171
LDI P+ Q + E S P+++ + +G+L A D + L +R L
Sbjct: 20 LDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPALDIRSLVRPAV 79
Query: 172 NLTEEELETHTISAWKEGKAYLNRQIDSHG 201
+ E + + ++ + +L ID HG
Sbjct: 80 FIPEVKRLNVLLREFRASRNHLAIVIDEHG 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,130,456
Number of Sequences: 62578
Number of extensions: 473043
Number of successful extensions: 1144
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 27
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)