Query 014157
Match_columns 429
No_of_seqs 510 out of 3563
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 1.8E-34 3.8E-39 283.7 26.7 303 93-428 55-359 (381)
2 COG2524 Predicted transcriptio 99.8 7.8E-18 1.7E-22 151.1 13.2 120 289-429 173-292 (294)
3 COG2524 Predicted transcriptio 99.6 1.9E-15 4.1E-20 135.8 12.0 122 196-345 170-291 (294)
4 COG3448 CBS-domain-containing 99.6 4.9E-15 1.1E-19 135.4 14.8 174 148-345 198-372 (382)
5 cd04641 CBS_pair_28 The CBS do 99.6 1.4E-14 3E-19 120.4 15.1 119 297-426 2-120 (120)
6 COG3620 Predicted transcriptio 99.6 5.3E-15 1.1E-19 123.4 11.6 119 290-429 67-185 (187)
7 COG3448 CBS-domain-containing 99.6 3.3E-15 7.2E-20 136.5 10.0 126 290-428 247-372 (382)
8 cd04603 CBS_pair_KefB_assoc Th 99.6 2.8E-14 6.2E-19 116.9 12.7 110 297-426 2-111 (111)
9 cd04619 CBS_pair_6 The CBS dom 99.6 7.5E-14 1.6E-18 114.9 14.5 111 298-425 3-113 (114)
10 cd04618 CBS_pair_5 The CBS dom 99.6 2.9E-14 6.4E-19 114.3 11.6 95 297-426 2-98 (98)
11 cd04617 CBS_pair_4 The CBS dom 99.6 1.3E-13 2.8E-18 114.2 14.4 113 297-425 2-117 (118)
12 cd04630 CBS_pair_17 The CBS do 99.5 2.8E-13 6E-18 111.4 14.8 112 297-426 2-114 (114)
13 PRK10892 D-arabinose 5-phospha 99.5 1E-13 2.2E-18 135.9 14.1 120 288-426 202-323 (326)
14 cd04593 CBS_pair_EriC_assoc_ba 99.5 2.8E-13 6E-18 111.5 14.6 112 297-426 2-115 (115)
15 cd04608 CBS_pair_PALP_assoc Th 99.5 9.1E-14 2E-18 116.5 11.6 113 297-427 3-124 (124)
16 cd04618 CBS_pair_5 The CBS dom 99.5 1.4E-13 3E-18 110.4 11.3 97 114-258 1-97 (98)
17 cd04600 CBS_pair_HPP_assoc Thi 99.5 3.7E-13 8.1E-18 112.1 13.9 117 296-426 2-124 (124)
18 cd04623 CBS_pair_10 The CBS do 99.5 7.5E-13 1.6E-17 108.1 15.0 112 297-426 2-113 (113)
19 TIGR00400 mgtE Mg2+ transporte 99.5 1.8E-13 3.8E-18 139.4 13.4 214 150-426 86-304 (449)
20 cd04801 CBS_pair_M50_like This 99.5 3.1E-13 6.8E-18 111.0 12.5 111 297-425 2-113 (114)
21 cd04642 CBS_pair_29 The CBS do 99.5 4E-13 8.6E-18 112.6 13.0 124 297-425 2-125 (126)
22 cd04639 CBS_pair_26 The CBS do 99.5 6E-13 1.3E-17 108.5 13.5 110 297-426 2-111 (111)
23 cd02859 AMPKbeta_GBD_like AMP- 99.5 1.9E-14 4.1E-19 110.3 3.9 39 2-40 41-79 (79)
24 PRK11543 gutQ D-arabinose 5-ph 99.5 3.8E-13 8.3E-18 131.5 14.0 119 289-426 198-318 (321)
25 cd04605 CBS_pair_MET2_assoc Th 99.5 1.3E-12 2.9E-17 106.3 14.9 107 297-425 3-109 (110)
26 cd04607 CBS_pair_NTP_transfera 99.5 1.2E-12 2.5E-17 107.3 14.6 110 297-425 3-112 (113)
27 cd04615 CBS_pair_2 The CBS dom 99.5 1E-12 2.2E-17 107.6 14.2 111 297-425 2-112 (113)
28 cd04614 CBS_pair_1 The CBS dom 99.5 5.4E-13 1.2E-17 106.5 11.8 95 297-426 2-96 (96)
29 cd04803 CBS_pair_15 The CBS do 99.5 1.1E-12 2.4E-17 108.8 14.1 116 297-426 2-122 (122)
30 cd04596 CBS_pair_DRTGG_assoc T 99.5 8.7E-13 1.9E-17 107.3 12.9 105 297-425 3-107 (108)
31 cd04624 CBS_pair_11 The CBS do 99.5 1.7E-12 3.6E-17 106.1 14.7 110 297-425 2-111 (112)
32 cd04631 CBS_pair_18 The CBS do 99.5 1E-12 2.2E-17 109.7 13.6 116 297-426 2-125 (125)
33 PRK15094 magnesium/cobalt effl 99.5 6.3E-13 1.4E-17 127.5 13.9 119 290-429 69-190 (292)
34 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 1.4E-12 3E-17 106.7 14.0 112 297-426 2-114 (114)
35 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.4E-12 3E-17 105.5 13.5 105 297-426 2-106 (106)
36 cd04626 CBS_pair_13 The CBS do 99.5 2E-12 4.4E-17 105.5 14.3 109 297-425 2-110 (111)
37 cd04629 CBS_pair_16 The CBS do 99.5 1.2E-12 2.7E-17 107.2 13.0 113 297-426 2-114 (114)
38 cd04643 CBS_pair_30 The CBS do 99.5 1.9E-12 4E-17 106.4 14.0 114 297-426 2-116 (116)
39 cd04588 CBS_pair_CAP-ED_DUF294 99.5 2.6E-12 5.6E-17 104.6 14.7 108 297-425 2-109 (110)
40 cd04621 CBS_pair_8 The CBS dom 99.5 1.9E-12 4.2E-17 110.1 14.5 115 297-426 2-135 (135)
41 cd04589 CBS_pair_CAP-ED_DUF294 99.5 2.8E-12 6.1E-17 104.6 14.9 110 297-426 2-111 (111)
42 cd04635 CBS_pair_22 The CBS do 99.5 1.4E-12 3E-17 108.3 13.1 116 297-426 2-122 (122)
43 cd04627 CBS_pair_14 The CBS do 99.5 1.1E-12 2.3E-17 109.5 12.5 119 297-424 2-121 (123)
44 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 2.6E-12 5.7E-17 104.2 14.4 106 297-425 3-108 (109)
45 cd04636 CBS_pair_23 The CBS do 99.5 1.8E-12 3.9E-17 109.5 13.9 115 297-426 2-132 (132)
46 cd04632 CBS_pair_19 The CBS do 99.4 2.1E-12 4.5E-17 108.4 14.1 117 297-426 2-128 (128)
47 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 2.3E-12 4.9E-17 105.5 13.9 112 297-426 3-114 (114)
48 PRK14869 putative manganese-de 99.4 3.2E-12 6.8E-17 133.9 18.4 194 202-426 72-302 (546)
49 cd04595 CBS_pair_DHH_polyA_Pol 99.4 3.7E-12 7.9E-17 103.8 14.8 107 297-425 3-109 (110)
50 cd04590 CBS_pair_CorC_HlyC_ass 99.4 3.3E-12 7.2E-17 104.1 14.5 108 297-425 2-110 (111)
51 cd04586 CBS_pair_BON_assoc Thi 99.4 1.4E-12 3E-17 110.7 12.5 115 297-426 3-135 (135)
52 PRK07807 inosine 5-monophospha 99.4 1.4E-12 3E-17 132.5 14.4 113 291-427 92-204 (479)
53 KOG1764 5'-AMP-activated prote 99.4 6.3E-12 1.4E-16 124.3 18.2 197 116-346 164-360 (381)
54 cd04620 CBS_pair_7 The CBS dom 99.4 3.3E-12 7.1E-17 104.9 13.8 111 297-426 2-115 (115)
55 cd04800 CBS_pair_CAP-ED_DUF294 99.4 5E-12 1.1E-16 103.1 14.7 109 297-425 2-110 (111)
56 cd04625 CBS_pair_12 The CBS do 99.4 5.1E-12 1.1E-16 103.2 14.7 111 297-426 2-112 (112)
57 PRK14869 putative manganese-de 99.4 1.2E-12 2.5E-17 137.1 13.5 284 104-426 68-391 (546)
58 cd04640 CBS_pair_27 The CBS do 99.4 1.9E-12 4.2E-17 108.5 12.2 112 297-425 2-125 (126)
59 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 4.3E-12 9.3E-17 103.3 14.0 110 297-426 2-111 (111)
60 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 5.2E-12 1.1E-16 102.8 14.2 109 297-425 2-110 (111)
61 COG3620 Predicted transcriptio 99.4 1.8E-12 4E-17 108.4 11.4 120 199-346 66-185 (187)
62 cd04641 CBS_pair_28 The CBS do 99.4 3E-12 6.6E-17 106.2 12.9 119 206-342 1-119 (120)
63 COG2905 Predicted signal-trans 99.4 1E-12 2.2E-17 130.5 11.7 120 288-427 149-269 (610)
64 cd04587 CBS_pair_CAP-ED_DUF294 99.4 3.7E-12 8E-17 104.1 13.3 111 297-425 2-112 (113)
65 cd04633 CBS_pair_20 The CBS do 99.4 4.5E-12 9.8E-17 105.0 12.9 114 297-426 2-121 (121)
66 TIGR03520 GldE gliding motilit 99.4 3.7E-12 7.9E-17 127.9 14.6 118 289-429 192-312 (408)
67 cd04585 CBS_pair_ACT_assoc2 Th 99.4 5.8E-12 1.3E-16 104.2 13.5 115 297-426 2-122 (122)
68 cd04601 CBS_pair_IMPDH This cd 99.4 3.4E-12 7.4E-17 103.7 11.6 106 297-425 3-109 (110)
69 cd04602 CBS_pair_IMPDH_2 This 99.4 6.3E-12 1.4E-16 103.3 13.3 106 297-425 3-113 (114)
70 cd04622 CBS_pair_9 The CBS dom 99.4 8.3E-12 1.8E-16 102.0 13.9 111 297-426 2-113 (113)
71 PRK05567 inosine 5'-monophosph 99.4 1.7E-11 3.7E-16 126.0 19.2 220 140-426 42-265 (486)
72 cd04606 CBS_pair_Mg_transporte 99.4 4.4E-12 9.5E-17 103.3 11.7 103 301-427 2-109 (109)
73 PRK01862 putative voltage-gate 99.4 3.6E-12 7.8E-17 134.1 14.2 122 289-428 448-571 (574)
74 cd04627 CBS_pair_14 The CBS do 99.4 9E-12 1.9E-16 103.8 13.5 120 207-341 2-121 (123)
75 cd04802 CBS_pair_3 The CBS dom 99.4 1.7E-11 3.6E-16 100.1 14.7 110 297-425 2-111 (112)
76 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.2E-11 2.7E-16 100.3 13.7 109 297-426 2-110 (110)
77 cd04637 CBS_pair_24 The CBS do 99.4 1.1E-11 2.4E-16 102.9 13.5 115 297-426 2-122 (122)
78 cd04603 CBS_pair_KefB_assoc Th 99.4 7.9E-12 1.7E-16 102.3 12.0 109 207-342 2-110 (111)
79 cd04599 CBS_pair_GGDEF_assoc2 99.4 1.5E-11 3.3E-16 99.0 13.3 103 297-425 2-104 (105)
80 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.9E-11 4.1E-16 101.2 14.1 114 297-425 2-120 (121)
81 cd04610 CBS_pair_ParBc_assoc T 99.4 1.2E-11 2.7E-16 100.0 12.5 105 297-426 3-107 (107)
82 cd04619 CBS_pair_6 The CBS dom 99.4 1.4E-11 3.1E-16 101.2 13.0 111 208-342 3-113 (114)
83 cd04594 CBS_pair_EriC_assoc_ar 99.4 1.7E-11 3.6E-16 99.0 12.8 100 299-425 4-103 (104)
84 PLN02274 inosine-5'-monophosph 99.3 1.7E-11 3.6E-16 125.6 15.0 113 294-427 106-221 (505)
85 PRK07107 inosine 5-monophospha 99.3 8.5E-12 1.8E-16 127.5 12.8 109 298-426 107-218 (502)
86 cd02205 CBS_pair The CBS domai 99.3 4.3E-11 9.4E-16 96.7 14.4 112 297-426 2-113 (113)
87 TIGR01302 IMP_dehydrog inosine 99.3 1.7E-11 3.7E-16 124.7 14.4 113 293-427 85-200 (450)
88 cd04617 CBS_pair_4 The CBS dom 99.3 1.9E-11 4.2E-16 101.1 12.2 111 207-342 2-117 (118)
89 cd04600 CBS_pair_HPP_assoc Thi 99.3 2.7E-11 5.9E-16 100.8 12.8 122 206-342 2-123 (124)
90 COG4109 Predicted transcriptio 99.3 9.8E-12 2.1E-16 116.7 10.7 116 289-428 189-306 (432)
91 COG0517 FOG: CBS domain [Gener 99.3 7.3E-11 1.6E-15 96.9 14.8 111 294-424 5-117 (117)
92 PRK05567 inosine 5'-monophosph 99.3 2.3E-11 5E-16 125.0 14.4 116 290-427 89-204 (486)
93 cd04630 CBS_pair_17 The CBS do 99.3 5E-11 1.1E-15 97.8 13.6 112 207-342 2-113 (114)
94 cd04591 CBS_pair_EriC_assoc_eu 99.3 3.5E-11 7.7E-16 97.6 12.4 100 297-426 3-105 (105)
95 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.2E-11 4.8E-16 123.6 13.6 111 292-427 92-202 (475)
96 PRK07807 inosine 5-monophospha 99.3 1.5E-10 3.2E-15 117.8 19.6 205 139-413 44-251 (479)
97 cd04634 CBS_pair_21 The CBS do 99.3 5.3E-11 1.2E-15 102.2 14.0 113 297-425 2-142 (143)
98 cd04605 CBS_pair_MET2_assoc Th 99.3 6.6E-11 1.4E-15 96.2 13.5 108 206-342 2-109 (110)
99 TIGR00393 kpsF KpsF/GutQ famil 99.3 2.5E-11 5.5E-16 115.6 12.6 112 289-419 156-268 (268)
100 cd04642 CBS_pair_29 The CBS do 99.3 2.9E-11 6.3E-16 101.2 11.4 126 114-259 1-126 (126)
101 cd04623 CBS_pair_10 The CBS do 99.3 6.7E-11 1.4E-15 96.4 13.2 111 207-342 2-112 (113)
102 TIGR00400 mgtE Mg2+ transporte 99.3 2.8E-11 6E-16 123.4 13.1 116 289-428 132-252 (449)
103 cd04607 CBS_pair_NTP_transfera 99.3 7.8E-11 1.7E-15 96.4 13.3 108 208-341 4-111 (113)
104 cd04638 CBS_pair_25 The CBS do 99.3 1E-10 2.3E-15 94.5 13.7 104 297-425 2-105 (106)
105 cd04624 CBS_pair_11 The CBS do 99.3 9.2E-11 2E-15 95.7 13.5 110 207-342 2-111 (112)
106 cd04614 CBS_pair_1 The CBS dom 99.3 8.5E-11 1.8E-15 93.7 12.8 94 207-342 2-95 (96)
107 cd04598 CBS_pair_GGDEF_assoc T 99.3 8.2E-11 1.8E-15 97.1 13.0 113 297-425 2-118 (119)
108 cd04639 CBS_pair_26 The CBS do 99.3 9E-11 2E-15 95.6 12.9 109 207-342 2-110 (111)
109 PTZ00314 inosine-5'-monophosph 99.3 5E-11 1.1E-15 122.1 13.6 113 294-427 102-217 (495)
110 PRK11543 gutQ D-arabinose 5-ph 99.3 4.7E-11 1E-15 116.8 12.6 117 201-343 200-318 (321)
111 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 3.1E-10 6.7E-15 115.4 18.9 159 139-346 43-204 (475)
112 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 1.3E-10 2.9E-15 93.8 13.2 104 207-342 2-105 (106)
113 cd04643 CBS_pair_30 The CBS do 99.3 9.1E-11 2E-15 96.3 12.2 114 207-342 2-115 (116)
114 cd04608 CBS_pair_PALP_assoc Th 99.3 3.5E-11 7.7E-16 100.7 9.8 113 206-343 2-123 (124)
115 COG2239 MgtE Mg/Co/Ni transpor 99.3 5.6E-11 1.2E-15 119.0 12.8 161 152-346 89-254 (451)
116 cd04593 CBS_pair_EriC_assoc_ba 99.2 1.7E-10 3.6E-15 94.8 13.3 111 207-342 2-114 (115)
117 cd04631 CBS_pair_18 The CBS do 99.2 1.1E-10 2.5E-15 97.1 12.4 123 207-342 2-124 (125)
118 cd04803 CBS_pair_15 The CBS do 99.2 1.4E-10 3.1E-15 96.1 12.8 120 207-342 2-121 (122)
119 cd04588 CBS_pair_CAP-ED_DUF294 99.2 2.1E-10 4.6E-15 93.2 13.6 108 207-342 2-109 (110)
120 cd04801 CBS_pair_M50_like This 99.2 1.1E-10 2.3E-15 95.8 11.8 109 207-342 2-113 (114)
121 cd04629 CBS_pair_16 The CBS do 99.2 1E-10 2.2E-15 95.7 11.5 112 207-342 2-113 (114)
122 PRK10892 D-arabinose 5-phospha 99.2 7.6E-11 1.6E-15 115.6 12.5 118 200-343 204-323 (326)
123 cd04615 CBS_pair_2 The CBS dom 99.2 2E-10 4.4E-15 93.8 13.1 111 207-342 2-112 (113)
124 TIGR01137 cysta_beta cystathio 99.2 1.4E-10 3E-15 119.0 14.8 118 289-427 336-453 (454)
125 cd04585 CBS_pair_ACT_assoc2 Th 99.2 2E-10 4.4E-15 94.9 13.1 120 207-342 2-121 (122)
126 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 2.5E-10 5.3E-15 92.5 13.3 106 207-342 3-108 (109)
127 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2E-10 4.3E-15 93.6 12.8 109 207-342 2-110 (111)
128 cd04586 CBS_pair_BON_assoc Thi 99.2 9E-11 2E-15 99.5 11.1 130 206-342 2-134 (135)
129 cd04626 CBS_pair_13 The CBS do 99.2 1.7E-10 3.7E-15 94.0 12.3 108 207-341 2-109 (111)
130 cd04595 CBS_pair_DHH_polyA_Pol 99.2 2.6E-10 5.6E-15 92.8 13.3 108 206-342 2-109 (110)
131 cd04620 CBS_pair_7 The CBS dom 99.2 2.4E-10 5.1E-15 93.8 13.2 110 207-342 2-114 (115)
132 cd04596 CBS_pair_DRTGG_assoc T 99.2 2E-10 4.3E-15 93.2 12.5 105 207-342 3-107 (108)
133 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 3.5E-10 7.6E-15 91.9 13.6 109 207-342 2-110 (111)
134 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 3.1E-10 6.7E-15 92.7 13.1 111 207-342 3-113 (114)
135 cd04590 CBS_pair_CorC_HlyC_ass 99.2 2.7E-10 5.8E-15 92.8 12.6 109 207-342 2-110 (111)
136 cd04636 CBS_pair_23 The CBS do 99.2 2.3E-10 5E-15 96.6 12.6 128 207-342 2-131 (132)
137 cd04633 CBS_pair_20 The CBS do 99.2 2E-10 4.4E-15 95.0 11.9 119 207-342 2-120 (121)
138 cd04621 CBS_pair_8 The CBS dom 99.2 3E-10 6.6E-15 96.5 13.0 129 207-342 2-134 (135)
139 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 4.2E-10 9E-15 91.5 13.3 109 207-342 2-110 (111)
140 COG0517 FOG: CBS domain [Gener 99.2 3.5E-10 7.5E-15 92.9 12.9 110 204-340 5-116 (117)
141 TIGR03520 GldE gliding motilit 99.2 5.9E-10 1.3E-14 112.1 17.0 160 102-314 189-348 (408)
142 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 3E-10 6.5E-15 92.7 12.3 111 207-342 2-113 (114)
143 cd04587 CBS_pair_CAP-ED_DUF294 99.2 4.5E-10 9.7E-15 91.7 13.3 111 207-342 2-112 (113)
144 cd04622 CBS_pair_9 The CBS dom 99.2 4.5E-10 9.8E-15 91.6 13.2 110 207-342 2-112 (113)
145 PRK11573 hypothetical protein; 99.2 5.3E-10 1.2E-14 112.4 15.6 121 290-429 189-312 (413)
146 PRK15094 magnesium/cobalt effl 99.2 1.1E-09 2.3E-14 105.3 16.7 164 101-314 64-227 (292)
147 cd04632 CBS_pair_19 The CBS do 99.2 6E-10 1.3E-14 93.4 13.1 124 207-342 2-127 (128)
148 cd04637 CBS_pair_24 The CBS do 99.2 5.1E-10 1.1E-14 92.8 12.5 120 207-342 2-121 (122)
149 cd04635 CBS_pair_22 The CBS do 99.2 3.5E-10 7.5E-15 93.7 11.5 120 207-342 2-121 (122)
150 cd04625 CBS_pair_12 The CBS do 99.2 7.5E-10 1.6E-14 90.3 13.3 110 207-342 2-111 (112)
151 cd04589 CBS_pair_CAP-ED_DUF294 99.2 7.3E-10 1.6E-14 90.2 13.1 109 207-342 2-110 (111)
152 cd04602 CBS_pair_IMPDH_2 This 99.1 8.1E-10 1.8E-14 90.6 12.9 109 207-342 3-113 (114)
153 cd04802 CBS_pair_3 The CBS dom 99.1 1.1E-09 2.4E-14 89.2 13.3 110 207-342 2-111 (112)
154 cd04609 CBS_pair_PALP_assoc2 T 99.1 8.2E-10 1.8E-14 89.5 12.4 108 207-342 2-109 (110)
155 cd04610 CBS_pair_ParBc_assoc T 99.1 1.2E-09 2.5E-14 88.3 13.0 105 206-342 2-106 (107)
156 cd04592 CBS_pair_EriC_assoc_eu 99.1 6.7E-10 1.4E-14 94.2 12.1 109 297-409 2-117 (133)
157 cd04640 CBS_pair_27 The CBS do 99.1 6.5E-10 1.4E-14 93.0 11.8 115 207-342 2-125 (126)
158 cd04601 CBS_pair_IMPDH This cd 99.1 7.5E-10 1.6E-14 89.8 11.7 107 206-342 2-109 (110)
159 cd02205 CBS_pair The CBS domai 99.1 1.5E-09 3.3E-14 87.5 13.2 111 207-342 2-112 (113)
160 PLN02274 inosine-5'-monophosph 99.1 9.9E-10 2.1E-14 112.7 14.5 116 204-346 106-223 (505)
161 cd04599 CBS_pair_GGDEF_assoc2 99.1 1.3E-09 2.7E-14 87.7 12.3 102 207-341 2-103 (105)
162 COG2905 Predicted signal-trans 99.1 5.2E-10 1.1E-14 111.5 11.4 119 201-345 152-270 (610)
163 cd04584 CBS_pair_ACT_assoc Thi 99.1 1.5E-09 3.3E-14 89.7 12.5 119 207-342 2-120 (121)
164 cd04594 CBS_pair_EriC_assoc_ar 99.1 1.5E-09 3.4E-14 87.4 11.9 100 209-342 4-103 (104)
165 TIGR01302 IMP_dehydrog inosine 99.1 2.4E-09 5.1E-14 109.1 16.0 163 139-344 34-200 (450)
166 cd04606 CBS_pair_Mg_transporte 99.1 1.5E-09 3.1E-14 88.3 11.8 102 211-343 2-108 (109)
167 PRK07107 inosine 5-monophospha 99.1 1.2E-09 2.6E-14 111.9 13.5 110 208-343 107-218 (502)
168 PTZ00314 inosine-5'-monophosph 99.1 2.1E-09 4.5E-14 110.3 14.7 115 203-344 101-217 (495)
169 cd04634 CBS_pair_21 The CBS do 99.1 2.9E-09 6.4E-14 91.3 13.4 126 207-342 2-142 (143)
170 KOG1616 Protein involved in Sn 99.1 1.1E-10 2.3E-15 111.2 4.0 45 1-45 121-165 (289)
171 TIGR00393 kpsF KpsF/GutQ famil 99.0 1.4E-09 3.1E-14 103.5 11.6 110 201-336 158-268 (268)
172 PRK01862 putative voltage-gate 99.0 1.5E-09 3.2E-14 114.4 12.8 120 201-345 450-571 (574)
173 cd04591 CBS_pair_EriC_assoc_eu 99.0 3.4E-09 7.5E-14 85.8 12.1 100 207-342 3-104 (105)
174 cd04598 CBS_pair_GGDEF_assoc T 99.0 3.2E-09 6.9E-14 87.5 11.7 113 207-342 2-118 (119)
175 COG1253 TlyC Hemolysins and re 99.0 7.1E-09 1.5E-13 105.1 13.9 113 296-429 216-329 (429)
176 COG2239 MgtE Mg/Co/Ni transpor 98.9 5.1E-09 1.1E-13 105.0 11.1 115 289-427 133-252 (451)
177 PRK11573 hypothetical protein; 98.9 3.4E-08 7.3E-13 99.5 17.0 132 102-266 185-316 (413)
178 COG4109 Predicted transcriptio 98.9 7.3E-09 1.6E-13 97.7 11.0 113 202-345 192-306 (432)
179 PF00571 CBS: CBS domain CBS d 98.9 2.5E-09 5.5E-14 76.3 6.1 54 375-429 4-57 (57)
180 cd04638 CBS_pair_25 The CBS do 98.9 2.9E-08 6.2E-13 80.1 12.6 104 207-342 2-105 (106)
181 TIGR01137 cysta_beta cystathio 98.9 1.7E-08 3.7E-13 103.5 12.9 117 200-344 337-453 (454)
182 cd04592 CBS_pair_EriC_assoc_eu 98.8 3E-08 6.6E-13 84.0 11.0 114 207-328 2-118 (133)
183 TIGR01186 proV glycine betaine 98.8 1.9E-07 4.1E-12 92.3 17.9 108 297-428 251-358 (363)
184 PF00571 CBS: CBS domain CBS d 98.8 8.8E-09 1.9E-13 73.5 6.2 55 291-345 2-56 (57)
185 cd02861 E_set_proteins_like E 98.8 3.9E-09 8.4E-14 81.5 4.2 38 2-39 42-81 (82)
186 COG4535 CorC Putative Mg2+ and 98.8 2.9E-08 6.3E-13 88.8 8.5 112 297-429 78-190 (293)
187 COG4536 CorB Putative Mg2+ and 98.7 1.2E-07 2.5E-12 90.6 10.9 122 289-429 201-325 (423)
188 PRK10070 glycine betaine trans 98.7 3.4E-07 7.3E-12 91.7 13.8 104 301-428 290-393 (400)
189 COG1253 TlyC Hemolysins and re 98.6 8.4E-07 1.8E-11 90.1 13.9 130 102-266 204-333 (429)
190 KOG2550 IMP dehydrogenase/GMP 98.6 1.5E-07 3.2E-12 90.5 7.3 107 297-426 117-226 (503)
191 KOG0474 Cl- channel CLC-7 and 98.4 3.5E-07 7.6E-12 92.3 6.7 149 277-426 564-745 (762)
192 COG4536 CorB Putative Mg2+ and 98.4 9.5E-06 2.1E-10 77.8 14.0 130 103-265 199-328 (423)
193 KOG2550 IMP dehydrogenase/GMP 98.3 2.7E-06 5.9E-11 82.0 9.2 163 138-343 61-226 (503)
194 TIGR01186 proV glycine betaine 98.3 1.5E-05 3.3E-10 78.9 14.0 110 207-347 251-360 (363)
195 PRK10070 glycine betaine trans 98.1 3.9E-05 8.5E-10 76.9 13.4 105 211-346 290-394 (400)
196 COG4535 CorC Putative Mg2+ and 98.0 6.9E-05 1.5E-09 67.5 10.7 129 103-266 66-194 (293)
197 KOG0474 Cl- channel CLC-7 and 98.0 2.2E-05 4.8E-10 79.7 7.9 144 199-343 583-745 (762)
198 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.8E-05 6E-10 63.7 6.0 53 290-342 60-112 (113)
199 smart00116 CBS Domain in cysta 97.8 7.2E-05 1.6E-09 50.0 5.9 47 380-427 2-48 (49)
200 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.8E-05 1.3E-09 61.8 6.4 48 377-425 65-112 (113)
201 KOG0475 Cl- channel CLC-3 and 97.7 0.00031 6.6E-09 71.7 11.2 128 298-427 558-694 (696)
202 smart00116 CBS Domain in cysta 97.6 0.00021 4.5E-09 47.7 6.2 47 298-344 2-48 (49)
203 TIGR03415 ABC_choXWV_ATP choli 97.3 0.0034 7.5E-08 62.6 12.7 84 317-429 298-381 (382)
204 COG4175 ProV ABC-type proline/ 97.1 0.002 4.4E-08 61.2 8.6 164 204-429 214-384 (386)
205 cd02858 Esterase_N_term Estera 96.9 0.0013 2.7E-08 51.0 3.9 33 3-35 48-80 (85)
206 KOG0475 Cl- channel CLC-3 and 96.9 0.015 3.3E-07 59.7 12.5 133 207-344 557-694 (696)
207 COG1125 OpuBA ABC-type proline 95.4 0.11 2.4E-06 48.3 9.2 112 297-426 188-308 (309)
208 KOG0476 Cl- channel CLC-2 and 95.3 0.062 1.3E-06 56.5 7.9 59 202-264 592-650 (931)
209 cd02688 E_set E or "early" set 94.7 0.025 5.4E-07 42.8 2.7 32 3-34 46-78 (83)
210 COG1125 OpuBA ABC-type proline 94.5 0.3 6.6E-06 45.5 9.4 120 206-342 187-307 (309)
211 COG4175 ProV ABC-type proline/ 92.6 0.23 5E-06 47.6 5.4 89 217-345 295-383 (386)
212 TIGR03415 ABC_choXWV_ATP choli 88.1 1.1 2.4E-05 44.8 6.2 47 297-345 334-380 (382)
213 KOG0476 Cl- channel CLC-2 and 78.5 2.8 6.1E-05 44.7 4.5 61 286-346 586-648 (931)
214 cd05814 CBM20_Prei4 Prei4, N-t 67.7 7 0.00015 32.1 3.6 15 2-16 52-67 (120)
215 PF14347 DUF4399: Domain of un 62.7 6.3 0.00014 30.5 2.3 27 2-29 57-83 (87)
216 KOG2118 Predicted membrane pro 60.9 17 0.00037 37.7 5.7 107 297-423 215-324 (498)
217 PF02922 CBM_48: Carbohydrate- 60.2 3.6 7.9E-05 31.2 0.6 17 3-19 58-74 (85)
218 PRK11388 DNA-binding transcrip 55.4 38 0.00083 36.4 7.6 96 308-420 62-163 (638)
219 PF01378 IgG_binding_B: B doma 50.9 8 0.00017 26.3 0.9 13 15-27 38-50 (55)
220 COG1559 Aminodeoxychorismate l 47.3 2.8E+02 0.006 27.4 11.3 144 207-400 46-191 (342)
221 PF06573 Churchill: Churchill 44.8 15 0.00033 29.2 1.7 14 7-20 69-82 (112)
222 cd05818 CBM20_water_dikinase P 44.0 30 0.00066 26.8 3.5 24 2-25 47-76 (92)
223 cd00503 Frataxin Frataxin is a 43.0 14 0.00031 29.6 1.5 19 5-24 65-83 (105)
224 cd02852 Isoamylase_N_term Isoa 42.9 22 0.00047 29.0 2.6 31 4-35 58-93 (119)
225 PRK00446 cyaY frataxin-like pr 42.6 15 0.00033 29.5 1.5 19 5-24 64-82 (105)
226 PF05198 IF3_N: Translation in 40.9 56 0.0012 24.5 4.3 30 319-348 12-41 (76)
227 TIGR03422 mito_frataxin fratax 38.9 21 0.00045 28.2 1.8 18 6-24 66-83 (97)
228 PRK11388 DNA-binding transcrip 37.8 1.3E+02 0.0028 32.4 8.2 100 218-336 62-162 (638)
229 KOG0045 Cytosolic Ca2+-depende 35.9 27 0.00058 37.3 2.5 27 5-31 115-144 (612)
230 PF00648 Peptidase_C2: Calpain 34.8 34 0.00074 32.8 2.9 22 6-27 87-111 (298)
231 cd02856 Glycogen_debranching_e 33.9 40 0.00087 26.6 2.7 15 4-19 54-68 (103)
232 PF01491 Frataxin_Cyay: Fratax 33.8 41 0.0009 27.1 2.8 19 6-25 69-87 (109)
233 cd05808 CBM20_alpha_amylase Al 33.5 45 0.00096 25.7 2.9 14 2-15 49-63 (95)
234 PF00686 CBM_20: Starch bindin 33.3 27 0.00058 27.2 1.6 14 2-15 54-68 (96)
235 smart00230 CysPc Calpain-like 33.3 36 0.00079 33.1 2.9 25 4-28 98-125 (318)
236 KOG2118 Predicted membrane pro 32.7 85 0.0018 32.7 5.5 127 101-261 201-328 (498)
237 COG2216 KdpB High-affinity K+ 31.2 66 0.0014 33.4 4.2 37 387-425 413-449 (681)
238 cd05809 CBM20_beta_amylase Bet 30.9 46 0.00099 26.1 2.6 23 2-24 54-83 (99)
239 cd05815 CBM20_DPE2_repeat1 Dis 30.5 48 0.001 26.1 2.7 14 2-15 51-65 (101)
240 PF05198 IF3_N: Translation in 30.2 1E+02 0.0022 23.1 4.1 25 401-426 12-36 (76)
241 cd00044 CysPc Calpains, domain 28.5 49 0.0011 32.1 2.9 24 4-27 106-132 (315)
242 TIGR00481 Raf kinase inhibitor 28.4 38 0.00082 28.7 1.8 10 6-15 95-104 (141)
243 cd05813 CBM20_genethonin_1 Gen 28.3 54 0.0012 25.4 2.6 14 2-15 48-62 (95)
244 smart00107 BTK Bruton's tyrosi 27.7 22 0.00047 22.5 0.2 18 8-25 7-24 (36)
245 TIGR03421 FeS_CyaY iron donor 27.5 41 0.00089 26.8 1.7 20 5-25 62-81 (102)
246 PF09912 DUF2141: Uncharacteri 27.4 48 0.001 26.8 2.2 45 3-47 49-97 (112)
247 PF11447 DUF3201: Protein of u 27.1 42 0.00092 28.0 1.8 11 10-21 35-45 (150)
248 cd02860 Pullulanase_N_term Pul 27.1 42 0.0009 26.3 1.7 23 5-28 57-84 (100)
249 PF13954 PapC_N: PapC N-termin 24.6 51 0.0011 28.0 1.9 31 3-33 26-56 (146)
250 PF14645 Chibby: Chibby family 23.0 63 0.0014 26.4 2.1 16 4-20 45-60 (116)
251 cd05820 CBM20_novamyl Novamyl 22.5 90 0.002 24.7 2.9 23 2-24 56-84 (103)
252 PRK01379 cyaY frataxin-like pr 21.8 46 0.001 26.6 1.0 14 6-20 66-79 (103)
253 COG0290 InfC Translation initi 21.5 2.4E+02 0.0053 24.7 5.4 31 318-348 17-47 (176)
254 PF07280 DUF1443: Protein of u 20.7 21 0.00045 23.6 -1.0 7 8-14 29-35 (43)
255 PF14827 Cache_3: Sensory doma 20.2 1E+02 0.0022 24.7 2.9 18 320-337 92-109 (116)
256 cd05811 CBM20_glucoamylase Glu 20.1 1.4E+02 0.003 23.5 3.5 14 2-15 59-73 (106)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-34 Score=283.74 Aligned_cols=303 Identities=31% Similarity=0.563 Sum_probs=258.0
Q ss_pred HHHHHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCC
Q 014157 93 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 172 (429)
Q Consensus 93 ~~~~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~ 172 (429)
....+..|++.++||+.+|.+++++++|..+++.+||.+|..++.+++|+||....++.|++++.||+.++...+..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999888764221
Q ss_pred C-ChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEE
Q 014157 173 L-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 251 (429)
Q Consensus 173 l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgil 251 (429)
. ..+.+++..+..|++..... +....++++.+.|..++.++...+.+++++++||.| .+.+ .+++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~il 202 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLL-------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLYIL 202 (381)
T ss_pred HHHHhhhhhhhccccchhhhhh-------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceeeeh
Confidence 1 23445555555555542221 112345559999999999999999999999999996 4666 799999
Q ss_pred ehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcE
Q 014157 252 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL 331 (429)
Q Consensus 252 t~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~l 331 (429)
|++.|++++..+.+... ...++..+++++.+|+|. .+..+..++++.+|+++|.+.+++++||||..|+.
T Consensus 203 t~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~ 272 (381)
T KOG1764|consen 203 TQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENGKK 272 (381)
T ss_pred hHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce
Confidence 99999999988766644 456789999999999996 58899999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHhccccccccccccc-HHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCC
Q 014157 332 LDIYCRSDITALAKDKAYAHINLSEMT-IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 410 (429)
Q Consensus 332 vGivt~~Di~~~~~~~~~~~l~l~~~~-v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~ 410 (429)
+|+++..|+..+...+.|..++ .+ +.+.+..+. ....++++|.++++|.+++.+|..+++||++||| +
T Consensus 273 v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd-~ 341 (381)
T KOG1764|consen 273 VGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD-E 341 (381)
T ss_pred ecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc-C
Confidence 9999999999999888886654 44 666664432 1134689999999999999999999999999999 5
Q ss_pred CCeEEEEEeHHHHHHHhh
Q 014157 411 SKRVEGIVSLSDIFKFLL 428 (429)
Q Consensus 411 ~g~l~GiIs~~Dil~~l~ 428 (429)
+|+++|+||++|++.++.
T Consensus 342 ~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 342 DGVLVGVISLSDILSYLV 359 (381)
T ss_pred CCcEEEEeeHHHHHHHHH
Confidence 899999999999999875
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.76 E-value=7.8e-18 Score=151.05 Aligned_cols=120 Identities=20% Similarity=0.380 Sum_probs=110.3
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 368 (429)
Q Consensus 289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~ 368 (429)
+++++|.++++++.+++|+.+|.++|.++++++.||+|+ ++++|++|.+|+..+..++.+ +..++++|
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~~M----- 240 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSDYM----- 240 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHHHh-----
Confidence 467789999999999999999999999999999999985 599999999999998887654 57899988
Q ss_pred CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
.+.++++..++.+.+|++.|..++++||.|+|. +|+++|+||++||++.+.+
T Consensus 241 --------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 241 --------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG 292 (294)
T ss_pred --------ccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence 558999999999999999999999999999995 8999999999999998864
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.64 E-value=1.9e-15 Score=135.83 Aligned_cols=122 Identities=19% Similarity=0.359 Sum_probs=106.6
Q ss_pred ccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccC
Q 014157 196 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK 275 (429)
Q Consensus 196 ~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~ 275 (429)
+...++.+|+++++++.+++|+.+|++++.+++++.+||+| ++ +++|++|.+||...++..
T Consensus 170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----~d---k~vGiit~~dI~~aia~g------------ 230 (294)
T COG2524 170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD----DD---KIVGIITLSDIAKAIANG------------ 230 (294)
T ss_pred CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----CC---ceEEEEEHHHHHHHHHcC------------
Confidence 34455678999999999999999999999999999999995 33 699999999999887653
Q ss_pred CccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157 276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 345 (429)
Q Consensus 276 ~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~ 345 (429)
....+|+++|.++++++..++.+.+|+++|..+++.++.|+|.+|+++|++|+.||+..+.
T Consensus 231 ---------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 ---------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ---------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 1223455669999999999999999999999999999999999999999999999987543
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.64 E-value=4.9e-15 Score=135.45 Aligned_cols=174 Identities=16% Similarity=0.263 Sum_probs=130.7
Q ss_pred CeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHH-HHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHh
Q 014157 148 ARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW-KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH 226 (429)
Q Consensus 148 ~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~-~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~ 226 (429)
++-+| ++..|+-..++.+.+. -+++.++|+.+--+.- +...+. ..+-++.++|+++++++.+++++.+|.++|.+
T Consensus 198 ~~rvg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~--~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~ 273 (382)
T COG3448 198 SQRVG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRR--MGELTCADIMSRDVVTVSTDTSIDHARKLLQE 273 (382)
T ss_pred hhccC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHH--hccccHHHhcCccceecCCcCChHHHHHHHHH
Confidence 34456 7889999999877542 2345566665422221 111111 12446678999999999999999999999999
Q ss_pred cCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCC
Q 014157 227 NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 306 (429)
Q Consensus 227 ~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~s 306 (429)
++++.+||+| +.. +++|++|++|+++.....+ -+.++.+ -.++++.+|+.++.++.++++
T Consensus 274 H~ikaLPV~d---~~~---rl~GiVt~~dl~~~a~~~p----------~qrlr~~----~~~~vk~imt~~v~tv~pdtp 333 (382)
T COG3448 274 HRIKALPVLD---EHR---RLVGIVTQRDLLKHARPSP----------FQRLRFL----RPPTVKGIMTTPVVTVRPDTP 333 (382)
T ss_pred cCcccccccc---ccc---ceeeeeeHHHHhhccCcch----------HHHhhcc----CCCcccccccCcceeecCCCc
Confidence 9999999996 444 7999999999987332211 1111111 123577789999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157 307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 345 (429)
Q Consensus 307 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~ 345 (429)
..+++-++.+.+.+++||+|++|+++|+||+.|++..+.
T Consensus 334 a~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 334 AVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred HHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 999999999999999999999999999999999987554
No 5
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=1.4e-14 Score=120.36 Aligned_cols=119 Identities=39% Similarity=0.692 Sum_probs=96.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+..+...+... ....++.+.+..+ ..|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~~~-------~~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN---NLDLTVGEALERR-------SQD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc---cccCCHHHHHhhc-------ccC
Confidence 567899999999999999999999999999899999999999999765443221 1123344433111 123
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence 45688999999999999999999999999999 47999999999999864
No 6
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.61 E-value=5.3e-15 Score=123.43 Aligned_cols=119 Identities=20% Similarity=0.426 Sum_probs=102.1
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157 290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 369 (429)
Q Consensus 290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~ 369 (429)
+..+|..+++.+.+++++.+++++|.+++++.+||+++ ++++|-||..+|.+....+.. ++...+++++|
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~vM------ 136 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVREVM------ 136 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHHHh------
Confidence 34458899999999999999999999999999999985 999999999999987755432 34467888877
Q ss_pred CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
..++++|++++++..+-++|..++ .+.|++ +|+++||||+.||++++.|
T Consensus 137 -------~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 137 -------GEPFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -------cCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHhc
Confidence 668999999999998888888776 477776 7999999999999998864
No 7
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.60 E-value=3.3e-15 Score=136.55 Aligned_cols=126 Identities=19% Similarity=0.362 Sum_probs=107.4
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157 290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 369 (429)
Q Consensus 290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~ 369 (429)
..++|+++++++..++++.+|.++|.+++++.+||+|++.+++|+||++|+++......+.++. ++ ..
T Consensus 247 cadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr--------~~----~~ 314 (382)
T COG3448 247 CADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR--------FL----RP 314 (382)
T ss_pred HHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh--------cc----CC
Confidence 4577999999999999999999999999999999999999999999999998755443332221 11 12
Q ss_pred CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428 (429)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~ 428 (429)
+...++|+.++.++.++++..+++-++.+.+.|++||+| +.|+++||||.+|++.++.
T Consensus 315 ~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred CcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHH
Confidence 333457788999999999999999999999999999999 5999999999999998764
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=2.8e-14 Score=116.88 Aligned_cols=110 Identities=9% Similarity=0.241 Sum_probs=93.3
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.+|++.|.+.+.+.++|+|++|+++|+++..|+.+.... . +.+.++.++|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~-----~~~~~v~~~~------------- 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-D-----YETLKVCEVY------------- 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-c-----ccccChhhee-------------
Confidence 46788999999999999998999999999988999999999999874221 1 1134566655
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence 44678999999999999999999999999999 47999999999999863
No 9
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=7.5e-14 Score=114.90 Aligned_cols=111 Identities=19% Similarity=0.351 Sum_probs=95.1
Q ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccC
Q 014157 298 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS 377 (429)
Q Consensus 298 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~ 377 (429)
+.++.+++++.+|++.|.+.+...+||+|++|+++|+++.+|+.+....... .....++.+++ .
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~~-------------~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVENVM-------------T 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHHHh-------------c
Confidence 5678999999999999999999999999999999999999999875532111 12245678776 4
Q ss_pred CCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 378 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 378 ~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
.++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence 5788999999999999999999999999999 4789999999999975
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.9e-14 Score=114.34 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=85.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
.++++++++++.+|++.|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 46789999999999999999999999999974 89999999999975211
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEeHHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKF 426 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~-g~l~GiIs~~Dil~~ 426 (429)
+.++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+|++++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence 557999999999999999999999999994 6 899999999999863
No 11
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.3e-13 Score=114.20 Aligned_cols=113 Identities=21% Similarity=0.332 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++..|+.+....+. .+...++.++|..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~~~~~----------- 66 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGVIMTR----------- 66 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHHHhCC-----------
Confidence 5678999999999999999899999999998899999999999987654221 1224567777621
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC---CeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS---KRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~---g~l~GiIs~~Dil~ 425 (429)
...+.++.+++++.+++++|.+++++++||||+ + |+++|+||.+||++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 67 MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 125889999999999999999999999999994 5 69999999999975
No 12
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=2.8e-13 Score=111.35 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=94.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++..+.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++....... .....++.++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------ 66 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYEIM------------ 66 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHHHh------------
Confidence 46789999999999999998999999999987 899999999999875433211 11235678776
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++++++++.++++.|.+.+.+.+||+| + |+++|+||+.|++++
T Consensus 67 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 67 -TKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred -cCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 44788999999999999999999999999999 4 999999999999863
No 13
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=1e-13 Score=135.87 Aligned_cols=120 Identities=14% Similarity=0.265 Sum_probs=103.6
Q ss_pred cccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157 288 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 365 (429)
Q Consensus 288 ~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~ 365 (429)
-+++++|.+ +++++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+ ..+.+.++.++|
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~----~~~~~~~v~~im-- 275 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG----IDLRQASIADVM-- 275 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----CCcccCCHHHhc--
Confidence 356777886 899999999999999999988888888899899999999999998765432 123346788876
Q ss_pred CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||+.||+++
T Consensus 276 -----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 -----------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred -----------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 55789999999999999999999999999998 5899999999999975
No 14
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.53 E-value=2.8e-13 Score=111.48 Aligned_cols=112 Identities=18% Similarity=0.334 Sum_probs=94.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA----GEPSAVDEVA------------- 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc----cccccHHHhc-------------
Confidence 46688899999999999999999999999989999999999999876543211 1123466655
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~--g~l~GiIs~~Dil~~ 426 (429)
..++.+|.+++++.++++.|.+++.+++||+|+ + |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 457889999999999999999999999999994 5 799999999999863
No 15
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.53 E-value=9.1e-14 Score=116.48 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+++++++||+|++|+++|+++.+|+++....+.. ..+.++.++|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im------------- 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKAL------------- 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHh-------------
Confidence 57889999999999999999999999999988999999999999875543221 1246888887
Q ss_pred CCCceEEcCCCCHHHHHHHHH---------cCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 377 SQRCQMCLPSDTLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~---------~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..++.++.+++++.++.+.|. +.+.+++||+| ++|+++|+||.+||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence 457889999999999999653 33678889998 579999999999999875
No 16
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=1.4e-13 Score=110.37 Aligned_cols=97 Identities=46% Similarity=0.726 Sum_probs=85.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhh
Q 014157 114 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 193 (429)
Q Consensus 114 ~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 193 (429)
+++++++++.|+.+|++.|.++++.++||+|++.++++|++|..|++.++
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------ 50 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------ 50 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe------------------------------
Confidence 37899999999999999999999999999997668999999999986432
Q ss_pred hcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHH
Q 014157 194 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 258 (429)
Q Consensus 194 ~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~ 258 (429)
. ++++.+++++.+|+++|.+++++++||++. ++| +++|++|.+|+++
T Consensus 51 -----------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~ 97 (98)
T cd04618 51 -----------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK 97 (98)
T ss_pred -----------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence 0 568999999999999999999999999962 236 7999999999975
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=3.7e-13 Score=112.10 Aligned_cols=117 Identities=22% Similarity=0.372 Sum_probs=95.6
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCC
Q 014157 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDS 369 (429)
Q Consensus 296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~------l~l~~~~v~~~l~~~~~~ 369 (429)
+++.++.+++++.++++.|.+.+++++||++++|+++|+++.+|++.......... ......++.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------ 75 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIM------ 75 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhc------
Confidence 36788999999999999999999999999998899999999999987554321100 001123455554
Q ss_pred CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|++++
T Consensus 76 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 76 -------SPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA 124 (124)
T ss_pred -------cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence 55788999999999999999999999999999 48999999999999863
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=7.5e-13 Score=108.08 Aligned_cols=112 Identities=23% Similarity=0.461 Sum_probs=94.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.++.++.++++.|.+.+++.+||+|++++++|+++..|+++....... .....++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~~------------- 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA---SALDTPVSEIM------------- 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC---CccccCHHHhc-------------
Confidence 46678999999999999999999999999988999999999999875543211 11134677765
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 45788999999999999999999999999999 3 999999999999864
No 19
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.50 E-value=1.8e-13 Score=139.39 Aligned_cols=214 Identities=14% Similarity=0.188 Sum_probs=156.3
Q ss_pred eeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHh---
Q 014157 150 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH--- 226 (429)
Q Consensus 150 ~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~--- 226 (429)
+..-++..|+.+++..+.. ....+-+....-.+.......+.|+++.+|++|++++++++++.|+.+|++.|.+
T Consensus 86 ~~~~l~~dd~~~ll~~l~~---~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~ 162 (449)
T TIGR00400 86 MINEMNLDDVIDLLEEVPA---NVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK 162 (449)
T ss_pred HHHcCChhHHHHHHHhCCH---HHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence 3344666666666644321 1112233444555555566777888999999999999999999999999999975
Q ss_pred --cCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCC
Q 014157 227 --NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPS 304 (429)
Q Consensus 227 --~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~ 304 (429)
++...++|+| +.+ +++|+++.+|++.. . ...+ ++++|.+++.++.++
T Consensus 163 ~~~~~~~v~Vvd---~~~---~l~GvV~l~dLl~a------~-------~~~~------------v~~im~~~~~~v~~~ 211 (449)
T TIGR00400 163 TKEDIYTLYVTN---ESK---HLKGVLSIRDLILA------K-------PEEI------------LSSIMRSSVFSIVGV 211 (449)
T ss_pred CccceeEEEEEC---CCC---eEEEEEEHHHHhcC------C-------CCCc------------HHHHhCCCCeeECCC
Confidence 4567788885 345 79999999998631 0 0122 333477788899999
Q ss_pred CCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCceEEc
Q 014157 305 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCL 384 (429)
Q Consensus 305 ~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~ 384 (429)
+++.+|++.|.+++...+||+|++|+++|+||.+|+++..... ..++++.. ...+..
T Consensus 212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~----------~~ed~~~~-------------~gv~~~ 268 (449)
T TIGR00400 212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE----------ATEDFYMI-------------AAVKPL 268 (449)
T ss_pred CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh----------hHHHHHHh-------------cCCCCC
Confidence 9999999999999999999999999999999999999877542 12566532 233444
Q ss_pred CCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 385 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 385 ~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
+++++.+++..|.+++..+|+|.- +.|++| ..++..
T Consensus 269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 578889999999999998887763 456666 444443
No 20
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=3.1e-13 Score=110.95 Aligned_cols=111 Identities=19% Similarity=0.347 Sum_probs=92.0
Q ss_pred CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++..|++....... ...++.++|..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~------~~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW------AQTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc------cccchhhhhcc----------
Confidence 4678899999999999987665 889999998899999999999987654211 13567777632
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence 12466899999999999999999999999999 4789999999999875
No 21
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=4e-13 Score=112.61 Aligned_cols=124 Identities=22% Similarity=0.362 Sum_probs=92.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
.+.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++....... ....+....+............+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDD----LLLYRTITFKELSEKFTDSDGVK 77 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcch----hhcccchhhhhhhhhcccccccc
Confidence 46789999999999999999999999999989999999999999876543211 00111100000000000011134
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++
T Consensus 78 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~ 125 (126)
T cd04642 78 SRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS 125 (126)
T ss_pred cCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence 56789999999999999999999999999999 4799999999999986
No 22
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6e-13 Score=108.55 Aligned_cols=110 Identities=22% Similarity=0.432 Sum_probs=94.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.+...... .+.++.+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~------------- 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVM------------- 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHh-------------
Confidence 4567899999999999998888999999998899999999999987654321 124677766
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|+.++
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~~ 111 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGEL 111 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhcC
Confidence 44788999999999999999999999999999 46999999999999753
No 23
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.49 E-value=1.9e-14 Score=110.25 Aligned_cols=39 Identities=41% Similarity=0.597 Sum_probs=37.5
Q ss_pred cccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEE
Q 014157 2 FFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLL 40 (429)
Q Consensus 2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~ 40 (429)
++||||.|+|||+|||+|++||++|++.|++|+.||+|+
T Consensus 41 ~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 41 LRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred EEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 689999999999999999999999999999999999984
No 24
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.48 E-value=3.8e-13 Score=131.52 Aligned_cols=119 Identities=13% Similarity=0.232 Sum_probs=102.9
Q ss_pred ccCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157 289 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366 (429)
Q Consensus 289 ~v~~~~~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~ 366 (429)
+|+++|.++ +.++++++++.+|++.|.+++...+||+|++|+++|+++..|+.+....+.. .+.++.++|
T Consensus 198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-----~~~~v~~im--- 269 (321)
T PRK11543 198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-----LTTPVNEAM--- 269 (321)
T ss_pred HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC-----cCCcHHHhc---
Confidence 466778887 9999999999999999998899999999999999999999999876543211 134577766
Q ss_pred CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
.+++.++.+++++.+|++.|.++++.++|||| ++|+++|+||+.|++++
T Consensus 270 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 270 ----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA 318 (321)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence 55788999999999999999999999999999 47899999999999875
No 25
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1.3e-12 Score=106.33 Aligned_cols=107 Identities=21% Similarity=0.447 Sum_probs=93.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.+++++.++++.|.+++++.+||+|++|+++|+++..++++...... .++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~~~------------- 61 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVEDIM------------- 61 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHHhc-------------
Confidence 5778999999999999999999999999998899999999999987554321 2366654
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+++.+.+||++ ++|+++|+||+.|+++
T Consensus 62 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~ 109 (110)
T cd04605 62 TRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK 109 (110)
T ss_pred CCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence 45788999999999999999999999999999 4899999999999975
No 26
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1.2e-12 Score=107.34 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=93.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++..++++.++++.|.+.+.+.++|+|++|+++|+++.+|+.+....... ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 64 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS-----LDDPVSEVM------------- 64 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC-----cCCCHHHhh-------------
Confidence 45678999999999999998899999999989999999999999875543211 134677776
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 112 (113)
T cd04607 65 NRNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence 44688999999999999999999999999999 4899999999999974
No 27
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=1e-12 Score=107.55 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=94.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+....... +...++.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------- 64 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVREVM------------- 64 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHHhc-------------
Confidence 36778999999999999999999999999988999999999999875432211 2235677765
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++..++++.++++.|.+++.+++||+| ++|+++|+||..||++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 NSPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence 44788999999999999999999999999999 4789999999999975
No 28
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=5.4e-13 Score=106.46 Aligned_cols=95 Identities=18% Similarity=0.376 Sum_probs=85.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
+++.+.+++++.+|++.|.+.+++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 567889999999999999999999999999899999999999997521
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
.+.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|++++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 155789999999999999999999999999 47899999999999863
No 29
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.1e-12 Score=108.85 Aligned_cols=116 Identities=17% Similarity=0.351 Sum_probs=95.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-----ccccccHHHHHhcCCCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-----NLSEMTIHQALQLGQDSYS 371 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l-----~l~~~~v~~~l~~~~~~~~ 371 (429)
++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++.+.......... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--------
Confidence 46788999999999999999999999999988999999999999876543211100 01234566665
Q ss_pred cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|++++
T Consensus 74 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 74 -----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL 122 (122)
T ss_pred -----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence 45788999999999999999999999999999 47899999999999864
No 30
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=8.7e-13 Score=107.27 Aligned_cols=105 Identities=20% Similarity=0.355 Sum_probs=92.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++.... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------- 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVM------------- 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHh-------------
Confidence 567889999999999999998999999999999999999999997421 134677776
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+++.+.+||+| ++|+++|+||..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence 44688999999999999999999999999999 5899999999999986
No 31
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.7e-12 Score=106.09 Aligned_cols=110 Identities=16% Similarity=0.372 Sum_probs=94.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+..++++.++++.|.+.+.+++||+|++|+++|+++..|+++....+.. ...++.++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID-----LDTPVSEIM------------- 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC-----CccCHHHhc-------------
Confidence 46788999999999999999999999999988999999999999876554321 134677665
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++..++++.++++.|.+++...+||++ ++|+++|++|..|+++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence 45788999999999999999999999999999 4799999999999975
No 32
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1e-12 Score=109.66 Aligned_cols=116 Identities=18% Similarity=0.348 Sum_probs=94.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccc-------cccccccHHHHHhcCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAH-------INLSEMTIHQALQLGQD 368 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~-------l~l~~~~v~~~l~~~~~ 368 (429)
++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+.+......... ......++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM----- 76 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh-----
Confidence 46788999999999999999999999999987 99999999999987654321100 001123556654
Q ss_pred CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..+++++++++++.++++.|.+.+.+.+||+| ++|+++|+||..||+++
T Consensus 77 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 77 --------TRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA 125 (125)
T ss_pred --------cCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence 45789999999999999999999999999999 47999999999999874
No 33
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.47 E-value=6.3e-13 Score=127.47 Aligned_cols=119 Identities=14% Similarity=0.406 Sum_probs=100.4
Q ss_pred cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157 290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366 (429)
Q Consensus 290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~ 366 (429)
++++|.+ .+.++..++++.++++.+.+++++++||++++ ++++|+++.+|++....... ...++.+++
T Consensus 69 V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~------~~~~l~~l~--- 139 (292)
T PRK15094 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL--- 139 (292)
T ss_pred EeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC------CcCCHHHHc---
Confidence 4455776 58999999999999999999999999999875 79999999999986543211 123466665
Q ss_pred CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
++++++++++++.++++.|.+++.+.++||| +.|.++|+||+.||+..++|
T Consensus 140 -----------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 140 -----------RQAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred -----------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence 2456899999999999999999999999999 58999999999999999876
No 34
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.47 E-value=1.4e-12 Score=106.72 Aligned_cols=112 Identities=19% Similarity=0.393 Sum_probs=95.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~~~------------- 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIM------------- 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHHhc-------------
Confidence 46789999999999999999899999999988999999999999876543211 1235677766
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCC-CCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG-SKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~-~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+.+.+++||+| + .|+++|++|..|++++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~~ 114 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLSA 114 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhcC
Confidence 45788999999999999999999999999999 5 6899999999999863
No 35
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.46 E-value=1.4e-12 Score=105.46 Aligned_cols=105 Identities=20% Similarity=0.243 Sum_probs=90.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+... .++.+++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~~------------- 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDHA------------- 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhhc-------------
Confidence 4678899999999999999889999999998899999999999986421 2355554
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
...+.++.+++++.++++.|.+++...+||+| ++|+++|+||.+|++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~~ 106 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIADY 106 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 44677899999999999999999999999999 57999999999999863
No 36
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2e-12 Score=105.51 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=93.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+++++++.++++.|.+.+.+++||+|++|+++|+++..|+..+...... .+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFNIV------------- 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHHHh-------------
Confidence 46788999999999999999999999999988999999999999875433211 134677766
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.+|++.|.+++..++||+| + |+++|+||..|++.
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 45788999999999999999999999999999 4 89999999999974
No 37
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.2e-12 Score=107.17 Aligned_cols=113 Identities=19% Similarity=0.349 Sum_probs=94.3
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..++++......+. .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~--~~~~~~v~~~~------------- 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH--CDGVATVRDIM------------- 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc--cCCCccHHHHh-------------
Confidence 467889999999999999988889999999899999999999998755432211 01235677766
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 44688899999999999999999999999999 4 899999999999864
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.9e-12 Score=106.44 Aligned_cols=114 Identities=18% Similarity=0.300 Sum_probs=92.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-ccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-NLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l-~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
.++++..++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.......... .+.+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~------------ 69 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVM------------ 69 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHh------------
Confidence 46789999999999999999999999999988999999999999876543211000 00134667765
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.+|++.|.+.+ .+||+| ++|+++|+||..|++++
T Consensus 70 -~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 70 -NTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA 116 (116)
T ss_pred -cCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence 457889999999999999998865 599999 58999999999999864
No 39
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.46 E-value=2.6e-12 Score=104.62 Aligned_cols=108 Identities=24% Similarity=0.394 Sum_probs=93.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+..++++.++++.|.+.+++++||+++ |+++|+++..|+++....+.. ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~~~------------- 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKDVM------------- 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHHHh-------------
Confidence 5678899999999999999999999999998 999999999999986544211 24577765
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||..|+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence 44788999999999999999999999999999 4799999999999975
No 40
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=1.9e-12 Score=110.09 Aligned_cols=115 Identities=15% Similarity=0.280 Sum_probs=93.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-------------------ccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-------------------NLSEM 357 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l-------------------~l~~~ 357 (429)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.......... .....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 45678999999999999999999999999999999999999999876542211000 00123
Q ss_pred cHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 358 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 358 ~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
++.++| ..++.++.+++++.++++.|.+.+.+++||++ +|+++|+||.+|++++
T Consensus 82 ~v~~~~-------------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAEDIM-------------TEEIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICRE 135 (135)
T ss_pred cHHHhc-------------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhhC
Confidence 455554 55788999999999999999999999999999 3899999999999863
No 41
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.45 E-value=2.8e-12 Score=104.63 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=93.3
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
+++.+..+.++.++++.|.+.+...++|+|+ |+++|+++..|+.+....... ..+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL----PSSTPVGEIA------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC----CCCCCHHHHh-------------
Confidence 4568899999999999999889999999997 899999999999876543211 1245677776
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhcC
Confidence 44788999999999999999999999999999 4899999999999874
No 42
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.4e-12 Score=108.34 Aligned_cols=116 Identities=20% Similarity=0.355 Sum_probs=93.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccc-cccc----ccccccHHHHHhcCCCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHI----NLSEMTIHQALQLGQDSYS 371 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~-~~~l----~l~~~~v~~~l~~~~~~~~ 371 (429)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+++...... .... .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHh--------
Confidence 4678999999999999999889999999998899999999999986421110 0000 01134555554
Q ss_pred cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++..++++.++++.|.+++.+++||+| ++|+++|++|+.|++++
T Consensus 74 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 74 -----STPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA 122 (122)
T ss_pred -----cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence 45788999999999999999999999999999 47999999999999863
No 43
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.1e-12 Score=109.45 Aligned_cols=119 Identities=13% Similarity=0.250 Sum_probs=90.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+.. ..+..+.... . .......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~------~~~~~~~~~~-~-~~~~~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENAR------SFPGLDPLYP-I-PLRDLTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHH------hccchhhhhh-h-hhhhccc
Confidence 46788999999999999998899999999987 999999999999875533211 0000000000 0 0000013
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 424 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil 424 (429)
|..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence 456788999999999999999999999999999 479999999999984
No 44
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.45 E-value=2.6e-12 Score=104.20 Aligned_cols=106 Identities=18% Similarity=0.366 Sum_probs=92.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.++.++.++++.|.+.++.++||+|++|+++|+++..|+...... ..++.++|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~------------- 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLEDIM------------- 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhHhh-------------
Confidence 56788999999999999999999999999988999999999999865422 13466655
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
...+.++++++++.++++.|.+.+.+++||++ ++|+++|+||..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence 44688899999999999999999999999999 4899999999999975
No 45
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.8e-12 Score=109.52 Aligned_cols=115 Identities=17% Similarity=0.341 Sum_probs=92.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc----------------cccccHH
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN----------------LSEMTIH 360 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~----------------l~~~~v~ 360 (429)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..++.+........... +...++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467889999999999999988999999999889999999999998765432110000 0001444
Q ss_pred HHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 361 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 361 ~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
+++ .+++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 82 ~~~-------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 EIM-------------TKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred Hhc-------------cCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 443 55788999999999999999999999999999 4 999999999999874
No 46
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.1e-12 Score=108.43 Aligned_cols=117 Identities=23% Similarity=0.417 Sum_probs=93.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc-c--------cccccccHHHHHhcCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA-H--------INLSEMTIHQALQLGQ 367 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~-~--------l~l~~~~v~~~l~~~~ 367 (429)
++..+.+++++.+|++.|.+.+.+.+||+|++|+++|++|..|+.++....... . ......++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAM---- 77 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHh----
Confidence 456789999999999999999999999999889999999999998754221100 0 001123455554
Q ss_pred CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeC-CCCeEEEEEeHHHHHHH
Q 014157 368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA-GSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~-~~g~l~GiIs~~Dil~~ 426 (429)
..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||++||+++
T Consensus 78 ---------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 78 ---------SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred ---------cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 557889999999999999999999999999851 36999999999999863
No 47
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.45 E-value=2.3e-12 Score=105.49 Aligned_cols=112 Identities=16% Similarity=0.354 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.++..... .....++.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----~~~~~~v~~~~------------- 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----DILTLPVADVM------------- 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----ccccCCHHHhh-------------
Confidence 4567899999999999998888899999998899999999999998765421 12234677776
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..+..++.+++++.++++.|.+++..++||+++ +|+++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~~ 114 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLRA 114 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhcC
Confidence 446788999999999999999999999999994 7999999999999863
No 48
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.45 E-value=3.2e-12 Score=133.87 Aligned_cols=194 Identities=16% Similarity=0.182 Sum_probs=137.5
Q ss_pred ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc----
Q 014157 202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP---- 277 (429)
Q Consensus 202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~---- 277 (429)
++|.++++++++++++.+|++.|.+++++.+||+| +++ +++|++|..|+.+.+....... .......+
T Consensus 72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i 143 (546)
T PRK14869 72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD---EEG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENI 143 (546)
T ss_pred HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHH
Confidence 35788999999999999999999999999999996 456 8999999999998776532100 00000111
Q ss_pred ------------------cccccCcccc-cccCCCCCCC-ceeecCCCCHHHHHHHHHhcCCCEEEEECCC---------
Q 014157 278 ------------------ICAIPVGTWV-PKIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDN--------- 328 (429)
Q Consensus 278 ------------------v~~l~i~~~~-~~v~~~~~~~-~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--------- 328 (429)
.+.+.++... ..+.+.+.+. ++.+... .++...+.+.++++++|+...
T Consensus 144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 1111111110 0111223332 3444332 344446778899999888632
Q ss_pred ---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccC-CCceEEcCCCCHHHHHHHHHcCCCCEE
Q 014157 329 ---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRL 404 (429)
Q Consensus 329 ---g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~v~~l 404 (429)
..+.++.|..|....+..-. ...++.++| . +++.++++++++.++.+.|.+++.+++
T Consensus 221 a~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~iM-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 281 (546)
T PRK14869 221 AKENGVTVISTPYDTFTTARLIN------QSIPVSYIM-------------TTEDLVTFSKDDYLEDVKEVMLKSRYRSY 281 (546)
T ss_pred HHhCCCeEEEecccHHHHHHHhh------cCCCHHHhc-------------cCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence 35888999999887654321 146788877 4 579999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEeHHHHHHH
Q 014157 405 VIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 405 ~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
|||| ++|+++|+||+.|+++.
T Consensus 282 PVvd-~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 282 PVVD-EDGKVVGVISRYHLLSP 302 (546)
T ss_pred EEEc-CCCCEEEEEEHHHhhcc
Confidence 9999 58999999999999874
No 49
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=3.7e-12 Score=103.78 Aligned_cols=107 Identities=24% Similarity=0.475 Sum_probs=93.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++..+.++.++.+.|.+.+.+++||+|+ |+++|+++..|+.+..... +...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~------------- 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYM------------- 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHh-------------
Confidence 5778899999999999999888999999997 9999999999998765332 1246778776
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.+++++|.+++.+++||++ +|+++|+||..|+++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 44788999999999999999999999999999 689999999999975
No 50
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.44 E-value=3.3e-12 Score=104.14 Aligned_cols=108 Identities=18% Similarity=0.350 Sum_probs=92.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++.++.+++++.+|++.|.+.+.+++||++++ |+++|+++..++.+....... ..++..++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~------------ 63 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRDLL------------ 63 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHHHh------------
Confidence 46788999999999999999899999999987 999999999999987654211 13455543
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
.++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus 64 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 --RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE 110 (111)
T ss_pred --cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence 2578899999999999999999999999999 4899999999999975
No 51
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.4e-12 Score=110.66 Aligned_cols=115 Identities=21% Similarity=0.372 Sum_probs=93.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc------c------------ccccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA------H------------INLSEMT 358 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~------~------------l~l~~~~ 358 (429)
++.++.+++++.++++.|.+.+++++||+|++++++|+++..|+.+........ . ......+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 577899999999999999999999999999889999999999998754322100 0 0001234
Q ss_pred HHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 359 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 359 v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
+.+++ ..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||+.|++++
T Consensus 83 v~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 83 VADVM-------------TRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHHHh-------------CCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 55544 55788999999999999999999999999999 6899999999999864
No 52
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=1.4e-12 Score=132.54 Aligned_cols=113 Identities=13% Similarity=0.218 Sum_probs=99.6
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157 291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 370 (429)
Q Consensus 291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~ 370 (429)
.++|.++++++.+++++.++++.|.+++++++||+|++++++|+||.+|+.... ...++.++|
T Consensus 92 ~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~V~diM------- 154 (479)
T PRK07807 92 RDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQVRDVM------- 154 (479)
T ss_pred ccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCCHHHhc-------
Confidence 445778899999999999999999999999999999999999999999985321 024577776
Q ss_pred CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..++.++++++++.+|++.|.+++++.+|||| ++|+++|+||.+||+++.
T Consensus 155 ------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 155 ------STDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRAT 204 (479)
T ss_pred ------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence 55899999999999999999999999999999 489999999999999865
No 53
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.43 E-value=6.3e-12 Score=124.31 Aligned_cols=197 Identities=15% Similarity=0.204 Sum_probs=148.0
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhc
Q 014157 116 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 195 (429)
Q Consensus 116 vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~ 195 (429)
.+.+.+..++.+|...+.++++..+||.|.+.++.++++|..-++.++-.... .+....+-..++.++
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~---~~~~~~~l~~s~~dl--------- 231 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGR---LLPLPSLLSKSLSDL--------- 231 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhc---ccccHHHhhCCHHHh---------
Confidence 38899999999999999999999999999888899999999999988855442 221223333333332
Q ss_pred ccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccC
Q 014157 196 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK 275 (429)
Q Consensus 196 ~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~ 275 (429)
++| ....+..+..++++.+|++.|.+++++.+||++ ..| ..+|.++..|+........-. .+.
T Consensus 232 ---~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~---~~g---~~v~~~s~~Dv~~l~~~~~~~------~~~ 294 (381)
T KOG1764|consen 232 ---GIG--TWSNIASISEDTPVIEALKIMSERRISALPVVD---ENG---KKVGNYSRFDVIHLAREGTYN------NLD 294 (381)
T ss_pred ---Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEEc---CCC---ceecceehhhhhhhhhcCccC------ccc
Confidence 112 344789999999999999999999999999996 444 579999999998655443211 111
Q ss_pred CccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157 276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346 (429)
Q Consensus 276 ~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~ 346 (429)
.+. ++.+.. ........++++.++.++.+++..|..+++++++|||++|.++|++|..|++..+..
T Consensus 295 ~~~----l~~~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 295 LSC----LSEALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred hhH----HHHHhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence 110 111110 001122358999999999999999999999999999999999999999999986654
No 54
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.3e-12 Score=104.94 Aligned_cols=111 Identities=20% Similarity=0.350 Sum_probs=90.0
Q ss_pred CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++.++..+.++.++++.|.+++ ...++|+| +|+++|+++..|+++....+. .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~----~~~~~~i~~~~------------ 64 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK----DLSDLPIGEVM------------ 64 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC----CccccCHHHhc------------
Confidence 4567899999999999998877 66777777 589999999999987654321 11235677765
Q ss_pred cCCCceEEcCC--CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 376 RSQRCQMCLPS--DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 376 ~~~~~~~v~~~--~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.++ +++.+|++.|.+++.+.+||+| ++|+++|+||+.|++++
T Consensus 65 -~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 65 -TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQV 115 (115)
T ss_pred -CCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhcC
Confidence 4467788877 7899999999999999999999 47999999999999863
No 55
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.43 E-value=5e-12 Score=103.10 Aligned_cols=109 Identities=20% Similarity=0.389 Sum_probs=92.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++..+.++.++.+.|.+.+.+.+||+|+ ++++|+++..++.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL----DPDTPVSEVM------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC----CccCCHHHHh-------------
Confidence 5678899999999999999888999999987 999999999999864332211 1135677766
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+++.+++||++ + |+++|+||..|+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999 3 89999999999985
No 56
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=5.1e-12 Score=103.20 Aligned_cols=111 Identities=14% Similarity=0.313 Sum_probs=90.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
.+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+.+....... .+...++.++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------- 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRAIM------------- 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHHHh-------------
Confidence 456789999999999999888887887776 5999999999999875542111 12235678776
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.+++++|.+++..++||+| +|+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence 34678899999999999999999999999999 5899999999999863
No 57
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.43 E-value=1.2e-12 Score=137.11 Aligned_cols=284 Identities=13% Similarity=0.158 Sum_probs=176.6
Q ss_pred ccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhh--h
Q 014157 104 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET--H 181 (429)
Q Consensus 104 ~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~--~ 181 (429)
.++.|++- .++++++++.|+.+|++.|.+++++.+||.|.+ ++++|++|..|+...+...... +.+.. .
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~~~~~~~ 138 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EILSKSPT 138 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hhhhhcCC
Confidence 56777773 478999999999999999999999999999964 7899999999999866543210 00110 0
Q ss_pred hHHHHHHhhhh-hhcccC------------------CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--
Q 014157 182 TISAWKEGKAY-LNRQID------------------SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ-- 240 (429)
Q Consensus 182 ~i~~~~~~~~~-~~~~~~------------------~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~-- 240 (429)
++..+.+.... +-+... .........++.+.....+ ...+.+.+++.++|..+..-
T Consensus 139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~ 215 (546)
T PRK14869 139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSE 215 (546)
T ss_pred CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCH
Confidence 11111110000 000000 0000112235555433333 44678888999988853220
Q ss_pred -------CCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC-CCceeecCCCCHHHHHH
Q 014157 241 -------DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALN 312 (429)
Q Consensus 241 -------~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~-~~~~~v~~~~sl~~a~~ 312 (429)
.. .+.++.|..|.......-. ...+ ++++|. ++++++.+++++.++.+
T Consensus 216 ~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~~~------------V~~iM~~~~~~~~~~~~~~~~~~~ 271 (546)
T PRK14869 216 DVLELAKEN---GVTVISTPYDTFTTARLIN---------QSIP------------VSYIMTTEDLVTFSKDDYLEDVKE 271 (546)
T ss_pred HHHHHHHhC---CCeEEEecccHHHHHHHhh---------cCCC------------HHHhccCCCcEEECCCCcHHHHHH
Confidence 11 4788888888876544321 1223 344487 78999999999999999
Q ss_pred HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc--cccccccccHHHHHhc----CCCCCCcccccCCCceEE---
Q 014157 313 LLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY--AHINLSEMTIHQALQL----GQDSYSPYELRSQRCQMC--- 383 (429)
Q Consensus 313 ~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~--~~l~l~~~~v~~~l~~----~~~~~~~~~~~~~~~~~v--- 383 (429)
.|.+++++.+||+|++|+++|++|.+|+++....... ..... ......+-.. ..++....+++...++.+
T Consensus 272 ~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~-~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~ 350 (546)
T PRK14869 272 VMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEK-SQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNE 350 (546)
T ss_pred HHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccc-cccccchhhceEEEEecCCccCCCCCCCCcEEEee
Confidence 9999999999999999999999999999975432110 00000 0000000000 001111223444444433
Q ss_pred cCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 384 LPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 384 ~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
+...+..-+.+.|.+.++...|++. +..+.||+|-++.+++
T Consensus 351 ~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 351 PVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS 391 (546)
T ss_pred eeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence 4466777888999999998888887 4578899888887653
No 58
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.9e-12 Score=108.45 Aligned_cols=112 Identities=22% Similarity=0.414 Sum_probs=89.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH-----HhcccccccccccccHHHHHhcCCCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-----AKDKAYAHINLSEMTIHQALQLGQDSYS 371 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~-----~~~~~~~~l~l~~~~v~~~l~~~~~~~~ 371 (429)
++.++..++++.++++.|.+++.+.+||+|++|+++|+++..|+.+. ...+ ...+.+.++.++|.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~v~~im~------- 71 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG---GISRSELTVADVMT------- 71 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc---CCCchheEHHHhcC-------
Confidence 46788999999999999998999999999988999999999999852 1111 01122456788773
Q ss_pred cccccCCCce--EE----cCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEeHHHHHH
Q 014157 372 PYELRSQRCQ--MC----LPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK 425 (429)
Q Consensus 372 ~~~~~~~~~~--~v----~~~~~l~~a~~~m~~~~v~~l~VVd~~~-g~l~GiIs~~Dil~ 425 (429)
.+.. .+ .+++++.++++.|.+++.+++||+| ++ |+++|+||++||++
T Consensus 72 ------~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~ 125 (126)
T cd04640 72 ------PKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR 125 (126)
T ss_pred ------chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence 2232 23 3689999999999999999999999 45 79999999999985
No 59
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.42 E-value=4.3e-12 Score=103.30 Aligned_cols=110 Identities=24% Similarity=0.411 Sum_probs=92.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~~------------- 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE-----ATVLVGDVM------------- 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc-----cccCHHHhc-------------
Confidence 5678999999999999999888999999997 999999999999875543211 113455544
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++..++++.++++.|.+++.+++||+| ++|+++|+||..||+++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~ 111 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLRA 111 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhhC
Confidence 55789999999999999999999999999999 47999999999999863
No 60
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.42 E-value=5.2e-12 Score=102.82 Aligned_cols=109 Identities=23% Similarity=0.350 Sum_probs=93.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+.+....... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGEVM------------- 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHHhc-------------
Confidence 4567899999999999999888999999986 999999999999876643211 245677765
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||.+|+++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence 44788899999999999999999999999999 4799999999999975
No 61
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.42 E-value=1.8e-12 Score=108.36 Aligned_cols=120 Identities=19% Similarity=0.396 Sum_probs=99.6
Q ss_pred CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc
Q 014157 199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 278 (429)
Q Consensus 199 ~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v 278 (429)
++..+|..+++++.|++++.+|+++|.+++++.+||++ .+ +++|-+|..+|.+.+.... ..+
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~---k~VGsItE~~iv~~~le~~-----------e~i 127 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE----ED---KVVGSITENDIVRALLEGM-----------ESI 127 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee----CC---eeeeeecHHHHHHHHhccc-----------cch
Confidence 44568999999999999999999999999999999995 35 7999999999998776432 122
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157 279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346 (429)
Q Consensus 279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~ 346 (429)
+++ ++.++|..++.++++++++..+-.++..+ .++.|+ ++|+++|+||..|++++...
T Consensus 128 ~~~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 128 RSL-------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred hhh-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 222 45666999999999999999888888654 578888 58999999999999987653
No 62
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=3e-12 Score=106.20 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=91.8
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++++++.+++++.+|++.|.+++.+++||++ +++ +++|+++.+|++.+....... ....++....
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~---~~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~--- 65 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVD---ENG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEAL--- 65 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHH---
Confidence 3678999999999999999999999999996 355 799999999999765322110 0011111100
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 66 ---~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 ---ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred ---hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 011224456789999999999999999999999999998899999999999874
No 63
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.42 E-value=1e-12 Score=130.45 Aligned_cols=120 Identities=23% Similarity=0.384 Sum_probs=106.6
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH-hcccccccccccccHHHHHhcC
Q 014157 288 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTIHQALQLG 366 (429)
Q Consensus 288 ~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~-~~~~~~~l~l~~~~v~~~l~~~ 366 (429)
+++++++..+++++++.+++.+|...|.+.|++++.++++++...||+|++|+.... .++. -...+|+++|
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----~~~~~V~evm--- 220 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----SKTQKVSEVM--- 220 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----Ccccchhhhh---
Confidence 456777888999999999999999999999999999999999999999999999644 3332 1256788876
Q ss_pred CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
+.+++++..++.+.+|+-+|.++++++|||++ +|+++|+||.+||++.+
T Consensus 221 ----------T~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 221 ----------TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLF 269 (610)
T ss_pred ----------ccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhh
Confidence 67999999999999999999999999999998 79999999999999875
No 64
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.42 E-value=3.7e-12 Score=104.13 Aligned_cols=111 Identities=15% Similarity=0.314 Sum_probs=91.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..|++........ .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~i~------------- 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVERVM------------- 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHHhc-------------
Confidence 4678899999999999999889999999997 999999999999853322111 11124677765
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+++.+++||++ ++|+++|+||..|++.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence 45788899999999999999999999999999 4799999999999975
No 65
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.5e-12 Score=105.02 Aligned_cols=114 Identities=18% Similarity=0.385 Sum_probs=92.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDSY 370 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~------l~l~~~~v~~~l~~~~~~~ 370 (429)
++..+.+++++.++++.|.+.+.+++||+|+ |+++|+++..++.+......... ..+...++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIM------- 73 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHc-------
Confidence 4678899999999999999889999999996 99999999999987543211100 011234555554
Q ss_pred CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 74 ------TRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ------cCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 45788999999999999999999999999999 4 899999999999864
No 66
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.40 E-value=3.7e-12 Score=127.95 Aligned_cols=118 Identities=16% Similarity=0.281 Sum_probs=101.1
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157 289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 365 (429)
Q Consensus 289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~ 365 (429)
+++++|.+ ++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++...... ..++.+++
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~~~-- 261 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQSLL-- 261 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHHHc--
Confidence 35566876 68999999999999999999999999999863 6899999999998643321 23456655
Q ss_pred CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
+++.++++++++.++++.|.+++.+..+|+| +.|.++|+||..||++.++|
T Consensus 262 ------------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 262 ------------REPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ------------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence 3578999999999999999999999999999 58999999999999999875
No 67
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.40 E-value=5.8e-12 Score=104.19 Aligned_cols=115 Identities=23% Similarity=0.377 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc------ccccccHHHHHhcCCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI------NLSEMTIHQALQLGQDSY 370 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l------~l~~~~v~~~l~~~~~~~ 370 (429)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..++............ .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIM------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhc-------
Confidence 4678899999999999999999999999997 999999999999876543211000 00123445444
Q ss_pred CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..||+++
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 74 ------TRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFRA 122 (122)
T ss_pred ------cCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhhC
Confidence 55788999999999999999999999999999 47999999999999863
No 68
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.40 E-value=3.4e-12 Score=103.73 Aligned_cols=106 Identities=21% Similarity=0.427 Sum_probs=89.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+..++++.++++.|.+.+.+.+||+|++|+++|+++.+++..... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~~~------------- 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSEVM------------- 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHHhc-------------
Confidence 5678899999999999999899999999998899999999999864311 135677766
Q ss_pred CCCceEEcC-CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLP-SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~-~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
...+.++.. ++++.++++.|.+.+.+.+||+| ++|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence 334555666 99999999999999999999999 4899999999999985
No 69
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.40 E-value=6.3e-12 Score=103.26 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=88.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 373 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~ 373 (429)
++.++..++++.++++.|.+.+.+.+||+|+ +|+++|+++..|+...... ..++.++|
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~---------- 63 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---------ETPLSEVM---------- 63 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---------CCCHHHhc----------
Confidence 4678889999999999999889899999997 7899999999998743211 23577766
Q ss_pred cccCCCceEEcC--CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 374 ELRSQRCQMCLP--SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 374 ~~~~~~~~~v~~--~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
.....++.. ++++.++++.|.+++.+.+|||| ++|+++|+||..|+++
T Consensus 64 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 64 ---TPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK 113 (114)
T ss_pred ---CCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence 334556655 99999999999999999999999 4899999999999975
No 70
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=8.3e-12 Score=102.02 Aligned_cols=111 Identities=22% Similarity=0.400 Sum_probs=91.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH-HHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~-~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++.++.+++++.+|++.|.+.+.+++||+|+ |+++|+++..|++ +....+. .....++.++|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~----~~~~~~~~~~~------------ 64 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR----DPDTTTVGDVM------------ 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC----CcccCCHHHhc------------
Confidence 4678899999999999999999999999997 9999999999987 3332211 11223477765
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
...+.++.+++++.++++.|...+.+++||+| ++|+++|+||..|++++
T Consensus 65 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~ 113 (113)
T cd04622 65 -TRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLARA 113 (113)
T ss_pred -cCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 44688899999999999999999999999999 47999999999999763
No 71
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.39 E-value=1.7e-11 Score=125.99 Aligned_cols=220 Identities=20% Similarity=0.293 Sum_probs=147.0
Q ss_pred eeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCc
Q 014157 140 APLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216 (429)
Q Consensus 140 ~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~s 216 (429)
+|+..+. .+.+|..++...+...+..+ .+++.++.... +...+. .++.|.++++++.++++
T Consensus 42 ~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~-I~~vk~-----------~~dim~~~~v~i~~~~t 105 (486)
T PRK05567 42 IPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE-VRKVKR-----------SESGVVTDPVTVTPDTT 105 (486)
T ss_pred cCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH-HHHhhh-----------hhhcccCCCeEeCCCCC
Confidence 7888642 34568888877775544322 12222221111 111111 13357889999999999
Q ss_pred HHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC-
Q 014157 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR- 295 (429)
Q Consensus 217 l~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~- 295 (429)
+.+|++.|.+++++++||++ +.+ +++|+++.+|+.... ....++. ++|.
T Consensus 106 v~ea~~~m~~~~~~~lpVvd---~~g---~lvGiVt~~DL~~~~------------~~~~~V~------------dim~~ 155 (486)
T PRK05567 106 LAEALALMARYGISGVPVVD---ENG---KLVGIITNRDVRFET------------DLSQPVS------------EVMTK 155 (486)
T ss_pred HHHHHHHHHHhCCCEEEEEc---cCC---EEEEEEEHHHhhhcc------------cCCCcHH------------HHcCC
Confidence 99999999999999999996 455 899999999995310 0112233 3365
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+||++..............+.+..
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a-------------- 221 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA-------------- 221 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe--------------
Confidence 578999999999999999999999999999999999999999999976432100000000111222
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
.+...+ ++ .+.++.|.+.+++.+ ++|..+|+..|+++.-+.++.
T Consensus 222 ----ai~~~~-~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 ----AVGVGA-DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred ----ecccCc-ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 222223 22 678888999999854 677446888888777666654
No 72
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=4.4e-12 Score=103.27 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=87.6
Q ss_pred ecCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 301 LRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 301 v~~~~sl~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.+++++.. .+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------ 59 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD----------PDTPVSDIM------------ 59 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC----------CcchHHHHh------------
Confidence 467889999999998776 47899999889999999999987521 134577765
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..|+++++
T Consensus 60 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 60 -DTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI 109 (109)
T ss_pred -CCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence 44688999999999999999999999999999 489999999999999864
No 73
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.39 E-value=3.6e-12 Score=134.13 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=103.4
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 368 (429)
Q Consensus 289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~ 368 (429)
+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+....... ..+.++.++|
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~dim----- 518 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAADYA----- 518 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHHhc-----
Confidence 4667788889999999999999999999999999999999999999999999875432211 1134567765
Q ss_pred CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEeHHHHHHHhh
Q 014157 369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKFLL 428 (429)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~--g~l~GiIs~~Dil~~l~ 428 (429)
.+++.++++++++.+++++|.+++.+++||||+ + ++++|+||++|+++++.
T Consensus 519 --------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~-~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 519 --------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVES-EASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred --------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC-CCCCeEEEEEEHHHHHHHHH
Confidence 557889999999999999999999999999994 4 58999999999999874
No 74
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=9e-12 Score=103.82 Aligned_cols=120 Identities=16% Similarity=0.276 Sum_probs=91.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.+|++.|.+++++++||+|. +++ +++|+++..|+++++.................+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~-------- 68 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL-------- 68 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence 5778999999999999999999999999962 225 799999999999876543211000000000000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 341 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~ 341 (429)
.+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+.
T Consensus 69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 01123566788999999999999999999999999999889999999999985
No 75
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=1.7e-11 Score=100.13 Aligned_cols=110 Identities=19% Similarity=0.383 Sum_probs=91.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++....... .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~------------- 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL---KPREVPVGEVM------------- 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC---CcccCCHHHhc-------------
Confidence 4677899999999999999889999999985 499999999999975432211 11235677765
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+.+.+.+||+|+ + +++|+||..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 447889999999999999999999999999993 4 9999999999975
No 76
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.38 E-value=1.2e-11 Score=100.28 Aligned_cols=109 Identities=19% Similarity=0.360 Sum_probs=89.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++..++++.++++.|.+++++++||+|+ |+++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVM------------- 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHh-------------
Confidence 4567899999999999999999999999997 999999999999986543211 0134677766
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++++++++.+++++|.+ . ..+|||+ ++|+++|+||++||++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~-~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVD-EGGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-C-CceeEEe-cCCeEEEEEeHHHhhcC
Confidence 4468889999999999999988 3 3478888 48999999999999875
No 77
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.1e-11 Score=102.91 Aligned_cols=115 Identities=14% Similarity=0.231 Sum_probs=92.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc-----ccccccHHHHHhcCCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI-----NLSEMTIHQALQLGQDSY 370 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~-~~l-----~l~~~~v~~~l~~~~~~~ 370 (429)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..++.+....... ... .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIM------- 73 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhh-------
Confidence 4678899999999999999999999999996 999999999999875432100 000 00012345544
Q ss_pred CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+++...+||+| ++|+++|++|+.|++++
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 74 ------TRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY 122 (122)
T ss_pred ------cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence 45788999999999999999999999999999 47999999999999874
No 78
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=7.9e-12 Score=102.28 Aligned_cols=109 Identities=14% Similarity=0.234 Sum_probs=88.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..|+++.... . ....+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~---~------~~~~~--------- 57 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVD---EEN---KVLGQVTLSDLLEIGPN---D------YETLK--------- 57 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHhhccc---c------ccccC---------
Confidence 356789999999999999999999999996 445 79999999999762110 0 01112
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 58 ---v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 58 ---VCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ---hhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 23336667889999999999999999999999999998899999999999975
No 79
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.5e-11 Score=99.02 Aligned_cols=103 Identities=17% Similarity=0.335 Sum_probs=89.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+.+++++.++++.|.+++.+.+||+| +++++|+++..++.+... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~~~------------- 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVADAM------------- 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHHHc-------------
Confidence 467789999999999999988999999998 699999999999976321 23566665
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 44788999999999999999999999999999 4 99999999999873
No 80
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.36 E-value=1.9e-11 Score=101.17 Aligned_cols=114 Identities=19% Similarity=0.387 Sum_probs=93.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc-----cccccccHHHHHhcCCCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-----INLSEMTIHQALQLGQDSYS 371 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~-----l~l~~~~v~~~l~~~~~~~~ 371 (429)
++.++.+++++.+|++.|.+.+.+++||+|++|+++|+++..++.+......... ......++.++|
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM-------- 73 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--------
Confidence 4678899999999999999889999999998899999999999986543211000 012235567766
Q ss_pred cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++..++++.++++.|.+.+...+||+| + |+++|++|..||++
T Consensus 74 -----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 74 -----TKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR 120 (121)
T ss_pred -----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence 44788999999999999999999999999999 3 89999999999986
No 81
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.2e-11 Score=99.96 Aligned_cols=105 Identities=15% Similarity=0.386 Sum_probs=90.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----------~~~~~~~~~------------- 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----------PDETVEEIM------------- 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----------ccccHHHhC-------------
Confidence 5678899999999999998888889999986 9999999999997521 124567765
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+++.+++||++ ++|+++|+|+..||+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIRS 107 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhcC
Confidence 44688899999999999999999999999999 48999999999999863
No 82
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.4e-11 Score=101.17 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=90.5
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccc
Q 014157 208 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 287 (429)
Q Consensus 208 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 287 (429)
+.++.+++++.+|++.|.+++...+||+| +++ +++|+++..++++.+...... ....++.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd---~~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~-------- 62 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCD---PHG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVE-------- 62 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEehHHHHHHHhhcCCC------cccCCHH--------
Confidence 56789999999999999999999999996 445 799999999998765321000 1112233
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 288 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 288 ~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|++.
T Consensus 63 ----~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 63 ----NVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ----HHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 336678899999999999999999999999999998899999999999864
No 83
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.35 E-value=1.7e-11 Score=99.04 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=86.6
Q ss_pred eeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCC
Q 014157 299 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ 378 (429)
Q Consensus 299 ~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~ 378 (429)
+++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+.. ..++.+++ ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~~~-------------~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVDYI-------------VR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhhhh-------------hc
Confidence 46789999999999999999999999997 9999999999997531 12345544 34
Q ss_pred CceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 379 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 379 ~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
++.++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 678999999999999999999999999998 589999999999975
No 84
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.34 E-value=1.7e-11 Score=125.60 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=98.2
Q ss_pred CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157 294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 370 (429)
Q Consensus 294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~ 370 (429)
|.++++++.+++++.+++++|.+++++.+||+|+ +|+++|+||.+|+.... ..+.++.++|..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIMt~----- 171 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVMTS----- 171 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHhcc-----
Confidence 4568899999999999999999999999999987 48999999999996532 124678998832
Q ss_pred CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..+++++.+++++.+|++.|.+++.+.+|||| ++++++|+||++||++++
T Consensus 172 ------~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 172 ------DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVK 221 (505)
T ss_pred ------CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence 12378999999999999999999999999999 489999999999999876
No 85
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=8.5e-12 Score=127.52 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=94.5
Q ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccc
Q 014157 298 LAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 374 (429)
Q Consensus 298 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~ 374 (429)
++++.+++++.+|+++|.+++++.+||+|+ +++++|+||..|+.... ...+.++.++|..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~dIMt~--------- 169 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKDFMTP--------- 169 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHHHhCC---------
Confidence 468999999999999999999999999986 58999999999996421 1225679998832
Q ss_pred ccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 375 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 375 ~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..+++++.+++++.+|+++|.++++++||||| ++++++|+||+.||++.
T Consensus 170 --~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 170 --FEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred --CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence 23688999999999999999999999999999 48999999999999875
No 86
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.33 E-value=4.3e-11 Score=96.73 Aligned_cols=112 Identities=25% Similarity=0.475 Sum_probs=93.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++..+..++++.++++.|.+.+.+.+||++++++++|+++.+|+........... ...+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~~~------------- 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGDVM------------- 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHHHh-------------
Confidence 4567889999999999999988999999998899999999999987665422110 11245544
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+++..|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILRA 113 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhcC
Confidence 45788899999999999999999999999999 47999999999999863
No 87
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.33 E-value=1.7e-11 Score=124.69 Aligned_cols=113 Identities=18% Similarity=0.332 Sum_probs=98.2
Q ss_pred CCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157 293 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 369 (429)
Q Consensus 293 ~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~ 369 (429)
.|.++++++.+++++.++++.|.+++++++||+|++ ++++|+++.+|+..... ...++.++|..
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~dvm~~---- 151 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSEVMTR---- 151 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHHhhCC----
Confidence 355688999999999999999999999999999987 79999999999975321 13578887721
Q ss_pred CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
.+++++++++++.++++.|.+++.+.+|||| ++|+++|+||+.||++.+
T Consensus 152 --------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 152 --------EEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred --------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 3789999999999999999999999999999 589999999999999864
No 88
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.9e-11 Score=101.07 Aligned_cols=111 Identities=23% Similarity=0.360 Sum_probs=89.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.++++..+||+| +.+ +++|+++..++++...... . ....++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~Givt~~dl~~~~~~~~-~------~~~~~~~------- 61 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD---EDG---DLVGVVSRKDLLKASIGGA-D------LQKVPVG------- 61 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHcCC-C------ccCCCHH-------
Confidence 568899999999999999999999999996 345 7999999999988654211 0 0011122
Q ss_pred ccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Di~~ 342 (429)
++|.. ++.++.+++++.+++++|.+++++.+||+|++ |+++|+||.+|+++
T Consensus 62 -----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 62 -----VIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -----HHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 22443 67899999999999999999999999999876 69999999999864
No 89
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.7e-11 Score=100.77 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=94.4
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++++++.+++++.++++.|.+++.+++||++ ++| +++|+++..++++++...... .....++ ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD---GDR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC---CCC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 5788999999999999999999999999996 336 799999999998765432110 0000000 001
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
....++++|.+.+.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|++.
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 111244557778999999999999999999999999999998999999999999874
No 90
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.32 E-value=9.8e-12 Score=116.69 Aligned_cols=116 Identities=16% Similarity=0.282 Sum_probs=103.0
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157 289 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366 (429)
Q Consensus 289 ~v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~ 366 (429)
.|+++|. .+...+..++++.+..++..+.+.+++||+|...+++|++|.+|+..... +.++..+|
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieKVM--- 255 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEKVM--- 255 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHHHh---
Confidence 3556666 56788999999999999999999999999999999999999999975322 46778776
Q ss_pred CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157 367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~ 428 (429)
+++++++.+.+++..+.++|.-.++..+||+| ++.+++|+||++|+++.+.
T Consensus 256 ----------tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 256 ----------TKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred ----------ccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHHH
Confidence 66899999999999999999999999999999 5999999999999999874
No 91
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.31 E-value=7.3e-11 Score=96.95 Aligned_cols=111 Identities=25% Similarity=0.454 Sum_probs=94.1
Q ss_pred CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157 294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 373 (429)
Q Consensus 294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~ 373 (429)
|.+.++++.++.++.+|...|.++++..+||++. ++++|++|.+|+.+........ ..++.++|
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~-----~~~v~~v~---------- 68 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKR-----LLPVKEVM---------- 68 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCc-----cccHHHhc----------
Confidence 3457899999999999999999999999999973 4899999999999877654321 11466665
Q ss_pred cccCCCceEEcCCCCHHHHHHHHHc-CCCCEEEEEeCCCC-eEEEEEeHHHHH
Q 014157 374 ELRSQRCQMCLPSDTLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIVSLSDIF 424 (429)
Q Consensus 374 ~~~~~~~~~v~~~~~l~~a~~~m~~-~~v~~l~VVd~~~g-~l~GiIs~~Dil 424 (429)
..++.++.+++++.++++.|.+ .+++++||+++ ++ +++|++|.+|++
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~ 117 (117)
T COG0517 69 ---TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL 117 (117)
T ss_pred ---cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence 4578999999999999999999 79999999994 65 999999999974
No 92
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.31 E-value=2.3e-11 Score=125.01 Aligned_cols=116 Identities=22% Similarity=0.365 Sum_probs=100.5
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157 290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 369 (429)
Q Consensus 290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~ 369 (429)
++++|.++++++.+++++.++++.|.+++++++||+|++++++|+++.+|+..... ...++.++|.
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---------~~~~V~dim~----- 154 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---------LSQPVSEVMT----- 154 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---------CCCcHHHHcC-----
Confidence 34557778999999999999999999999999999999999999999999964211 1346788762
Q ss_pred CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..+++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus 155 -------~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 155 -------KERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred -------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence 14789999999999999999999999999999 589999999999999765
No 93
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=5e-11 Score=97.82 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=90.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.+|++.|.+++.+.+||++. +.+ +++|+++.+++++.+...... ....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~------- 63 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRVNVY------- 63 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCccCHH-------
Confidence 5678999999999999999999999999961 225 799999999998866432100 0111222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|..++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+++
T Consensus 64 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 64 -----EIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -----HHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 336667899999999999999999999999999987 99999999999864
No 94
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.31 E-value=3.5e-11 Score=97.56 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=87.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 373 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~ 373 (429)
....+.+++++.++.+.+.+.+.+.+||+|+ +|+++|+++.+|+.+.... +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~m---------- 57 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------YI---------- 57 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------hc----------
Confidence 3567899999999999999988889999998 6899999999999765422 22
Q ss_pred cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
..++.++++++++.++++.|.+++.+.+||++ +|+++|+||+.|++++
T Consensus 58 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 58 ---DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred ---cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 34678899999999999999999999999997 6899999999999864
No 95
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.31 E-value=2.2e-11 Score=123.65 Aligned_cols=111 Identities=13% Similarity=0.173 Sum_probs=96.3
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 014157 292 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 371 (429)
Q Consensus 292 ~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~ 371 (429)
++|.++++++.+++++.++++.|.+++++.+||+| +++++|++|.+|+.... ...++.++|
T Consensus 92 eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~----------~~~~V~dIM-------- 152 (475)
T TIGR01303 92 DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD----------RFTQVRDIM-------- 152 (475)
T ss_pred hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC----------CCCCHHHHc--------
Confidence 34667889999999999999999999999999998 47999999999984321 124678876
Q ss_pred cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..+++++.+++++.+|++.|.+++++.+|||| ++|+++|+||.+||+++.
T Consensus 153 -----t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 153 -----STDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRAT 202 (475)
T ss_pred -----cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHH
Confidence 55899999999999999999999999999999 489999999999999864
No 96
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=1.5e-10 Score=117.77 Aligned_cols=205 Identities=14% Similarity=0.171 Sum_probs=137.0
Q ss_pred EeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCC
Q 014157 139 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 215 (429)
Q Consensus 139 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~ 215 (429)
.+|+..+- ..-+|..+....+...+.-+ .+++ +..+.+.....+ ..++|.++++++.+++
T Consensus 44 ~~Pi~sa~----Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-----v~~iMi~~pvtv~~d~ 106 (479)
T PRK07807 44 TIPLVVAN----MTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-----SRDLVFDTPVTLSPDD 106 (479)
T ss_pred ccceeecC----CcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-----cccccccCCeEECCCC
Confidence 37877542 34566777766665443110 2332 222222222221 1345889999999999
Q ss_pred cHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC
Q 014157 216 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 295 (429)
Q Consensus 216 sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~ 295 (429)
++.+|++.|.+++++.+||+| +++ +++|++|.+|+... . ...++ .++|.
T Consensus 107 tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~------~-------~~~~V------------~diMt 155 (479)
T PRK07807 107 TVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV------D-------RFTQV------------RDVMS 155 (479)
T ss_pred CHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC------c-------cCCCH------------HHhcc
Confidence 999999999999999999996 455 79999999998420 0 01223 34477
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
.+++++.+++++.+|++.|.++++..+||+|++|+++|+||.+||++........ ..-....+..
T Consensus 156 ~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a-------------- 220 (479)
T PRK07807 156 TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA-------------- 220 (479)
T ss_pred CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh--------------
Confidence 8899999999999999999999999999999889999999999999865442110 0000111221
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCe
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 413 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~ 413 (429)
.. .......+.++.|.+.+++. .++|..+|.
T Consensus 221 ----av--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 221 ----AV--GINGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred ----hh--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 11 12234667778888888876 466743443
No 97
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=5.3e-11 Score=102.16 Aligned_cols=113 Identities=24% Similarity=0.406 Sum_probs=90.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc------cc---------------
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI------NL--------------- 354 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~-~~l------~l--------------- 354 (429)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++....... ..+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 4678999999999999999999999999997 999999999999876543210 000 00
Q ss_pred ------ccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 355 ------SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 355 ------~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
...++.+ +|..++.++..++++.+++..|.+.+.+++||++ + |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~-------------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRD-------------IMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHH-------------HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 1123333 3456789999999999999999999999999999 4 89999999999974
No 98
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=6.6e-11 Score=96.21 Aligned_cols=108 Identities=22% Similarity=0.433 Sum_probs=90.2
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++++++.+++++.+|++.|.+++...+||++ +++ +++|+++..++++.+.... .++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~----- 59 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVD---EDG---RLVGIVTSWDISKAVARDK-----------KSVED----- 59 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEEC---CCC---cEEEEEeHHHHHHHHhhCc-----------cCHHH-----
Confidence 5678899999999999999999999999996 346 7999999999987554210 11222
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+|..++..+.+++++.++++.|.+++...+||++++|+++|+++..|+.+
T Consensus 60 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 60 -------IMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred -------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 25567889999999999999999999999999998899999999999864
No 99
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.29 E-value=2.5e-11 Score=115.56 Aligned_cols=112 Identities=17% Similarity=0.301 Sum_probs=95.8
Q ss_pred ccCCCCCCC-ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 014157 289 KIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 367 (429)
Q Consensus 289 ~v~~~~~~~-~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~ 367 (429)
+++++|.++ +..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+. ..+.++.++|
T Consensus 156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~-----~~~~~v~~im---- 226 (268)
T TIGR00393 156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG-----SLKSEVRDFM---- 226 (268)
T ss_pred hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC-----cccCcHHHhC----
Confidence 456668777 899999999999999999999999999998999999999999987644211 1245688876
Q ss_pred CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEe
Q 014157 368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 419 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs 419 (429)
..++.++.+++++.+|++.|.+.+.+++||+| ++|+++|+|+
T Consensus 227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~ 268 (268)
T TIGR00393 227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH 268 (268)
T ss_pred ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence 45788999999999999999999999999999 4789999985
No 100
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2.9e-11 Score=101.23 Aligned_cols=126 Identities=28% Similarity=0.385 Sum_probs=92.2
Q ss_pred ccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhh
Q 014157 114 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 193 (429)
Q Consensus 114 ~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 193 (429)
++++++++++|+.+|++.|.++++..+||+|.. ++++|+++..|+............... . ..........
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~-~-----~~~~~~~~~~-- 71 (126)
T cd04642 1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRT-I-----TFKELSEKFT-- 71 (126)
T ss_pred CCeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccc-h-----hhhhhhhhcc--
Confidence 367899999999999999999999999999975 889999999999876521110000000 0 0000000000
Q ss_pred hcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHH
Q 014157 194 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 259 (429)
Q Consensus 194 ~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~ 259 (429)
.....+..+++.+.+++++.+|+++|.+++++++||++ +++ +++|++|..||+++
T Consensus 72 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd---~~~---~~~Giit~~dil~~ 126 (126)
T cd04642 72 -----DSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD---EEG---KPIGVITLTDIISI 126 (126)
T ss_pred -----cccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC---CCC---CEEEEEEHHHHhcC
Confidence 11123567899999999999999999999999999996 335 79999999999863
No 101
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.7e-11 Score=96.44 Aligned_cols=111 Identities=20% Similarity=0.386 Sum_probs=90.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.++.++.+|++.|.+++.+++||++ +++ +++|+++..++++.+...... ....+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~--------- 60 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVD---DGG---RLVGIFSERDIVRKVALRGAS------ALDTP--------- 60 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEehHHHHHHHhhcCCC------ccccC---------
Confidence 567889999999999999999999999996 335 799999999999866532110 00112
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 61 ---~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 61 ---VSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ---HHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 23336668899999999999999999999999999986 99999999999864
No 102
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.29 E-value=2.8e-11 Score=123.35 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=99.3
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157 289 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 363 (429)
Q Consensus 289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l 363 (429)
+++++|.++++++++++++.++++.|.+ +....++|+|++++++|+++.+|++... .+.+++++|
T Consensus 132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~im 201 (449)
T TIGR00400 132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSSIM 201 (449)
T ss_pred hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHHHh
Confidence 3556688899999999999999999975 4567899999899999999999987421 134688877
Q ss_pred hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157 364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428 (429)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~ 428 (429)
.+++.++++++++.+|++.|.+++...+|||| ++|+++|+||.+|+++.+.
T Consensus 202 -------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 202 -------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred -------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence 44688899999999999999999999999999 5899999999999998764
No 103
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=7.8e-11 Score=96.44 Aligned_cols=108 Identities=20% Similarity=0.356 Sum_probs=88.6
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccc
Q 014157 208 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 287 (429)
Q Consensus 208 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 287 (429)
.+++.+++++.+|++.|.+++.+.++|++ +++ +++|+++.+++++.+..... ...++.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~-------- 61 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVD---ENG---RLLGTVTDGDIRRALLKGLS--------LDDPVS-------- 61 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEEC---CCC---CEEEEEEcHHHHHHHhcCCC--------cCCCHH--------
Confidence 46789999999999999999999999996 345 79999999999875542210 111222
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157 288 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 341 (429)
Q Consensus 288 ~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~ 341 (429)
++|..++.++.+++++.++++.|.+++.+.+||++++|+++|++|.+|++
T Consensus 62 ----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 62 ----EVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ----HhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 33566788999999999999999999999999999889999999999986
No 104
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=1e-10 Score=94.50 Aligned_cols=104 Identities=21% Similarity=0.411 Sum_probs=88.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
++.++..++++.++++.|.+.+++.+||++++++++|+++..++..... +.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~~~------------- 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLALLM------------- 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHHHh-------------
Confidence 4567888999999999999888999999998899999999999975211 12455554
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++..++++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence 44788899999999999999999999999999 479999999999975
No 105
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=9.2e-11 Score=95.68 Aligned_cols=110 Identities=20% Similarity=0.399 Sum_probs=90.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++..+.+++++.+|++.|.+++.+.+||++ +++ +++|+++..++++.+..... ...++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~------- 60 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD---PDE---RPIGIVTERDIVRAVAAGID--------LDTPVS------- 60 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEC---CCC---CEEEEeeHHHHHHHHhccCC--------CccCHH-------
Confidence 567889999999999999999999999996 345 79999999999886654211 111222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|..++..+..++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 61 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 61 -----EIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred -----HhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 336667889999999999999999999999999998899999999999863
No 106
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=8.5e-11 Score=93.70 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=83.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++++.+||+| +++ +++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLD---DDG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHhcCC--------------------------
Confidence 567899999999999999999999999996 445 799999999997410
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.+.++.+++++.++++.|.+++.+.+||++++|+++|++|.+|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1568899999999999999999999999998899999999999874
No 107
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=8.2e-11 Score=97.10 Aligned_cols=113 Identities=15% Similarity=0.241 Sum_probs=89.1
Q ss_pred CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..|+.+......... .....++.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~v~~~~------------ 67 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA-LYGKKPVSEVM------------ 67 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH-HHcCCcHHHhc------------
Confidence 4567889999999999998776 889999998 99999999999986543210000 01234567665
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCC---EEEEEeCCCCeEEEEEeHHHHHH
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVR---RLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~---~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+.+.. ..+||+ ++|+++|+||..|+++
T Consensus 68 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 68 -DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR 118 (119)
T ss_pred -CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence 45788999999999999999998864 346888 4899999999999975
No 108
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=9e-11 Score=95.57 Aligned_cols=109 Identities=23% Similarity=0.423 Sum_probs=90.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.+|++.|.+.+...+||++ +++ +++|+++..++.+++.... ...++.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~---------~~~~v~~------ 60 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVD---GDG---HLVGLLTRDDLIRALAEGG---------PDAPVRG------ 60 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEEC---CCC---cEEEEeeHHHHHHHHHhcC---------CCCcHHH------
Confidence 567889999999999999988899999996 345 7999999999988665321 0112222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+|..++..+.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus 61 ------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 61 ------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 35567889999999999999999999999999998799999999999864
No 109
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.26 E-value=5e-11 Score=122.07 Aligned_cols=113 Identities=22% Similarity=0.224 Sum_probs=96.9
Q ss_pred CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157 294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 370 (429)
Q Consensus 294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~ 370 (429)
+..+++++.+++++.+++++|.+++++.+||+|++ ++++|+++.+|+.... . .+.++.++|..
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~--------~~~~V~diMt~----- 167 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D--------KSTPVSEVMTP----- 167 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c--------CCCCHHHhhCC-----
Confidence 55678999999999999999999999999999873 8999999999997321 1 14678888732
Q ss_pred CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..++.++.+++++.+|+++|.+++.+.+|||| ++++++|+||++||++..
T Consensus 168 ------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 168 ------REKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence 12688999999999999999999999999999 589999999999999763
No 110
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.26 E-value=4.7e-11 Score=116.81 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=97.6
Q ss_pred CccCCCC--ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc
Q 014157 201 GKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 278 (429)
Q Consensus 201 g~~~~~~--~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v 278 (429)
+++|.++ ++++++++++.+|++.|.+++...+||+| ++| +++|+++..|+.+.+.... ....+
T Consensus 200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd---~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~- 264 (321)
T PRK11543 200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCD---AQQ---QVQGVFTDGDLRRWLVGGG--------ALTTP- 264 (321)
T ss_pred HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEecHHHHHHHHhCCC--------CcCCc-
Confidence 4467777 99999999999999999998899999996 456 7999999999987553210 01122
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157 279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 343 (429)
Q Consensus 279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~ 343 (429)
+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||++|++++
T Consensus 265 -----------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 265 -----------VNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred -----------HHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 334477889999999999999999999999999999988999999999999864
No 111
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.26 E-value=3.1e-10 Score=115.37 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=115.5
Q ss_pred EeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCC
Q 014157 139 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 215 (429)
Q Consensus 139 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~ 215 (429)
.+|+..+. .--+|.......+...+.-+ .++ ++..|.+.....+ ..+.|.++++++.+++
T Consensus 43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-----v~eim~~~pvtv~p~~ 105 (475)
T TIGR01303 43 TIPLVVAN----MTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-----SRDLVLDTPITLAPHD 105 (475)
T ss_pred ccceeecc----chhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-----hhhccccCCeEECCCC
Confidence 46777542 33456666665555443211 222 3444444333321 1235778899999999
Q ss_pred cHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC
Q 014157 216 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 295 (429)
Q Consensus 216 sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~ 295 (429)
++.+|+++|.+++++.+||+| ++ +++|++|.+|+... . ...+ +.++|.
T Consensus 106 tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~------~-------~~~~------------V~dIMt 153 (475)
T TIGR01303 106 TVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV------D-------RFTQ------------VRDIMS 153 (475)
T ss_pred CHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC------C-------CCCC------------HHHHcc
Confidence 999999999999999999985 24 79999999998310 0 0122 334477
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346 (429)
Q Consensus 296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~ 346 (429)
.+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 889999999999999999999999999999989999999999999986543
No 112
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.26 E-value=1.3e-10 Score=93.75 Aligned_cols=104 Identities=14% Similarity=0.193 Sum_probs=86.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.++.++.+|++.|.+++.+.+||++ ++| +++|+++..++++... .++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d---~~g---~~~Giv~~~dl~~~~~--------------~~~~------- 54 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVD---ADG---QPLGFVTRREAARASG--------------GCCG------- 54 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEeHHHHHHhcc--------------cchh-------
Confidence 467889999999999999999999999995 446 7999999999985311 1122
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+++.+++++
T Consensus 55 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 55 -----DHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -----hhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 225556778999999999999999999999999998899999999999864
No 113
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=9.1e-11 Score=96.29 Aligned_cols=114 Identities=18% Similarity=0.322 Sum_probs=88.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
.++++.+++++.+|++.|.+++++.+||+| +++ +++|+++.+++++++........ ..+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~--------- 64 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLD---KEG---KYVGTISLTDILWKLKGLENLDL--ERLVDLK--------- 64 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeEC---CCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCc---------
Confidence 467899999999999999999999999996 445 79999999999987753221100 0000112
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.++|.+++.++.+++++.+|++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 65 ---v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 65 ---VIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred ---HHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 33346678899999999999999998754 5999998899999999999874
No 114
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.25 E-value=3.5e-11 Score=100.69 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=90.3
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++++++.+++++.+|++.|.+++++.+||++ +++ +++|+++..++++.+..... ....+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd---~~~---~~~Gii~~~dl~~~~~~~~~-------~~~~~-------- 60 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD---ESG---KILGMVTLGNLLSSLSSGKV-------QPSDP-------- 60 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHHhcc-------CCCCc--------
Confidence 3678899999999999999999999999996 345 79999999999876543211 01223
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHH---------hcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLV---------QAQVSSIPIVDDNDSLLDIYCRSDITAL 343 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~---------~~~~~~lpVvd~~g~lvGivt~~Di~~~ 343 (429)
++++|.+++.++.+++++.++.+++. +.+...+||++++|+++|+||.+|++++
T Consensus 61 ----v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 61 ----VSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred ----HHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 34448889999999999999999642 3367888999988999999999999864
No 115
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.6e-11 Score=118.99 Aligned_cols=161 Identities=16% Similarity=0.249 Sum_probs=128.4
Q ss_pred EeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhc----
Q 014157 152 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN---- 227 (429)
Q Consensus 152 Gilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~---- 227 (429)
.=++..|.+.++..+. .+...+.|....-......+...+|+++++|+.|+..++++.++.|+.+|+..+.+.
T Consensus 89 e~m~~Dd~~~ll~elp---~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~ 165 (451)
T COG2239 89 EELDIDDAADLLDELP---DEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDA 165 (451)
T ss_pred HhcCcHHHHHHHHhCC---HHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccc
Confidence 3355556666664432 333445666666666667777889999999999999999999999999999999854
Q ss_pred -CCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCC
Q 014157 228 -EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 306 (429)
Q Consensus 228 -~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~s 306 (429)
.+..+.|+| .++ +++|+++.++++. .....+++++ |.+.++.+.+++.
T Consensus 166 e~~~~lyVvD---~~~---~L~Gvvsl~~Ll~-------------a~~~~~i~~i------------m~~~~~~V~~~~d 214 (451)
T COG2239 166 ETIYYLYVVD---EKG---KLLGVVSLRDLLT-------------AEPDELLKDL------------MEDDVVSVLADDD 214 (451)
T ss_pred cccceEEEEC---Ccc---ceEEEeeHHHHhc-------------CCcHhHHHHH------------hcccceeecccCC
Confidence 468889996 455 7999999999973 1112333444 7788999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157 307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346 (429)
Q Consensus 307 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~ 346 (429)
.+++.+.+.+++.-++||||++++++|++|..|++..+..
T Consensus 215 qeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 215 QEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999987754
No 116
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.24 E-value=1.7e-10 Score=94.75 Aligned_cols=111 Identities=18% Similarity=0.357 Sum_probs=89.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++..+.+++++.+|++.|.+.+.+.+||+| +++ +++|+++..++++.+..... ....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~--------- 59 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVD---RDG---GVVGIITLPDLLRALEADEA-------GEPSA--------- 59 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc---CCC---CEEEEEEHHHHHHHHhcccc-------ccccc---------
Confidence 456788999999999999999999999996 345 79999999999876543110 00111
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~Di~~ 342 (429)
+.++|..++..+.+++++.++++.|.+++...+||+|++ |+++|+||.+|+++
T Consensus 60 ---~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 60 ---VDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ---HHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 223356678999999999999999999999999999876 79999999999874
No 117
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=97.12 Aligned_cols=123 Identities=20% Similarity=0.329 Sum_probs=92.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.++.++.+|+++|.+.+...+||++. +++ +++|+++..++++++............. . .. ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~-~---~~----~~ 68 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGN-G---LE----AI 68 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccc-c---ch----hh
Confidence 5678899999999999999999999999962 236 8999999999998765321110000000 0 00 00
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
...+.+++.+++..+.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 11233446667999999999999999999999999999998799999999999875
No 118
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.4e-10 Score=96.11 Aligned_cols=120 Identities=21% Similarity=0.425 Sum_probs=92.4
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+.+++.+||++ +++ +++|+++..++++++........ .... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~-~~~~~~----- 67 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVN---EDG---KLVGLLTQRDLLRAALSSLSDNG--EESL-TKERDV----- 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEEC---CCC---CEEEEEEHHHHHHHhcccccccc--cccc-ccccCc-----
Confidence 567899999999999999999999999996 345 79999999999987653321100 0000 000111
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.+.+++..++..+.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus 68 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 68 --PVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred --CHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 233346668889999999999999999999999999998899999999999874
No 119
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.24 E-value=2.1e-10 Score=93.22 Aligned_cols=108 Identities=23% Similarity=0.407 Sum_probs=89.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++++....... ..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~------ 59 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKVKD------ 59 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCHHH------
Confidence 577899999999999999999999999995 3 6 79999999999876432110 012222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+|..++..+.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 60 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 60 ------VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ------HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 25567899999999999999999999999999998899999999999863
No 120
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.1e-10 Score=95.79 Aligned_cols=109 Identities=14% Similarity=0.276 Sum_probs=86.4
Q ss_pred CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 207 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++.++.+++++.+|++.|.+++ .+.+||+| +++ +++|+++..|+++...... ...++.++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~---- 62 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD---NEG---RYVGIISLADLRAIPTSQW---------AQTTVIQV---- 62 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEc---CCC---cEEEEEEHHHHHHHHHhhc---------cccchhhh----
Confidence 5678899999999999997775 88999996 345 7999999999987553211 01122222
Q ss_pred cccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
|.+ ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 63 --------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 63 --------MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred --------hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 332 3568899999999999999999999999998899999999999864
No 121
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1e-10 Score=95.73 Aligned_cols=112 Identities=21% Similarity=0.336 Sum_probs=89.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..++++.+....... ....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~--------- 61 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD---DNG---NLVGFLSEQDCLKQLLESSYHC-----DGVAT--------- 61 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEEC---CCC---eEEEEeehHHHHHHhhhhhhcc-----CCCcc---------
Confidence 567889999999999999998999999996 445 7999999999998665321000 00112
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.++|..++..+.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 62 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 62 ---VRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred ---HHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 22335667889999999999999999999999999987 99999999999874
No 122
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.23 E-value=7.6e-11 Score=115.57 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=95.8
Q ss_pred CCccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc
Q 014157 200 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 277 (429)
Q Consensus 200 ~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~ 277 (429)
++++|.+ +++++.+++++.+|++.|.+++...+||++ ++| +++|++|..|+.+.+.... .+...
T Consensus 204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~- 269 (326)
T PRK10892 204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQA- 269 (326)
T ss_pred HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccC-
Confidence 3456776 899999999999999999998888878885 456 7999999999986433110 01112
Q ss_pred cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157 278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 343 (429)
Q Consensus 278 v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~ 343 (429)
.++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|+||++|+++.
T Consensus 270 -----------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 270 -----------SIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred -----------CHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 24455888899999999999999999999999999997 6899999999999864
No 123
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=2e-10 Score=93.79 Aligned_cols=111 Identities=15% Similarity=0.247 Sum_probs=89.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++..+.+++++.+|++.|.+.+.+.+||++ +++ +++|+++..++.+...... .+...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i~------- 61 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVD---DKK---RLVGIITRYDVLSYALESE-------ELKDAKVR------- 61 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEc---CCC---CEEEEEEHHHHHHhhhhhh-------hhcCCcHH-------
Confidence 356789999999999999999999999996 345 7999999999987543210 00112222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|..++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 62 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 62 -----EVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -----HhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 235567889999999999999999999999999998899999999999863
No 124
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.23 E-value=1.4e-10 Score=118.96 Aligned_cols=118 Identities=14% Similarity=0.237 Sum_probs=97.1
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 368 (429)
Q Consensus 289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~ 368 (429)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+++....... ..+.++.++|
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~im----- 406 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA----NPDDAVSKVM----- 406 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC----CcCCCHHHhc-----
Confidence 4567788899999999999999999999999999999988999999999999875543211 1134678776
Q ss_pred CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
..++.++++++++.++++.|.+++ .+||+ ++|+++|+||++||+++|
T Consensus 407 --------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 407 --------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------CCCCeEECCcCcHHHHHHHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence 457889999999999999998864 34555 279999999999999986
No 125
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.23 E-value=2e-10 Score=94.87 Aligned_cols=120 Identities=20% Similarity=0.310 Sum_probs=92.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.++.++.+|++.|.+++...+||++ + + +++|+++..+++++......... ..+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD---R-G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEec---C-C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 567889999999999999999999999996 2 6 79999999999987643221100 000000000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 11234456778899999999999999999999999999998899999999999875
No 126
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.23 E-value=2.5e-10 Score=92.51 Aligned_cols=106 Identities=21% Similarity=0.361 Sum_probs=88.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++..+.+++++.+|+..|.+++...+||++ +++ +++|+++..++++.... ..++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~------------~~~v~------- 57 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVD---KDN---KLLGIVSLESLEQAYKE------------AKSLE------- 57 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEc---CCC---cEEEEEEHHHHHHHhhc------------CCcHh-------
Confidence 567789999999999999999999999996 345 79999999999864321 01222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|...+..+.+++++.++++.|.+.+.+.+||++++|+++|++|.+|+++
T Consensus 58 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 58 -----DIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred -----HhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 225567889999999999999999999999999998899999999999864
No 127
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.23 E-value=2e-10 Score=93.57 Aligned_cols=109 Identities=22% Similarity=0.396 Sum_probs=88.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.+++++.++.+|++.|.+++.+++||++ + + +++|+++..++++.+.... . ....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~-~------~~~~~i~------- 60 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD---D-G---RLVGIVTDRDLRNRVVAEG-L------DPDTPVS------- 60 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHhccC-C------CccCCHH-------
Confidence 567889999999999999999999999996 3 5 7999999999987543210 0 0111222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|..++..+.+++++.++++.|.+.+.+++||+++ |+++|++|.+|+++
T Consensus 61 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 61 -----EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -----HHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 335668889999999999999999999999999986 99999999999874
No 128
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=9e-11 Score=99.46 Aligned_cols=130 Identities=20% Similarity=0.343 Sum_probs=92.7
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc--c-
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI--P- 282 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l--~- 282 (429)
+++.++.+++++.+|++.|.+++.+++||++ +.+ +++|+++..+++++....+.........+....... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD---DDG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC---CCC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence 5678899999999999999999999999996 445 799999999998765432110000000000000000 0
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.......+.++|..++..+.+++++.++++.|.+.+.+.+||+| +|+++|++|.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 00001123444667889999999999999999999999999999 899999999999864
No 129
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.7e-10 Score=93.99 Aligned_cols=108 Identities=14% Similarity=0.289 Sum_probs=88.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++..+++++++.+|++.|.+++.+.+||++ +.+ +++|+++..+++.+..... ....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~------- 60 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKD---NEE---KLKGVVTFTDILDLDLFES--------FLEKKVF------- 60 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEc---CCC---CEEEEEehHHhHHHHhhcc--------cccCcHH-------
Confidence 567889999999999999999999999996 345 7999999999986543210 0112222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 341 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~ 341 (429)
++|.+++..+.+++++.++++.|.+++...+||+++ |+++|++|..|++
T Consensus 61 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~ 109 (111)
T cd04626 61 -----NIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDIL 109 (111)
T ss_pred -----HHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhc
Confidence 236667889999999999999999999999999987 9999999999986
No 130
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=2.6e-10 Score=92.75 Aligned_cols=108 Identities=19% Similarity=0.382 Sum_probs=89.5
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
+++++++++.++.+|++.|.+++...+||++ + + +++|+++..++.+.+.... ...++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~----- 60 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKD----- 60 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHH-----
Confidence 4678899999999999999988999999996 3 5 7999999999987553211 1122333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+|.+++..+.+++++.+++++|.+.+.+.+||++ +|+++|++|..|+++
T Consensus 61 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 61 -------YMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred -------HhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 3666788999999999999999999999999998 889999999999864
No 131
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=2.4e-10 Score=93.80 Aligned_cols=110 Identities=22% Similarity=0.347 Sum_probs=85.6
Q ss_pred CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 207 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++.++.++.++.+|++.|.+++ ...++|.+ .+ +++|+++..|+++++..... ....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~----- 62 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDLPIGE----- 62 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------ccccCHHH-----
Confidence 4567899999999999998888 56667763 35 79999999999876543110 01122222
Q ss_pred cccccCCCCCCCceeecCC--CCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~--~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+|..++.++.++ +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus 63 -------~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 63 -------VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred -------hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 355677788876 68999999999999999999998899999999999875
No 132
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=2e-10 Score=93.24 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=88.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.+|+..|.+++.+.+||++ +++ +++|+++..+++... ...++.++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~-------------~~~~v~~~----- 58 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD---EKN---KVVGIVTSKDVAGKD-------------PDTTIEKV----- 58 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEEC---CCC---eEEEEecHHHHhccc-------------ccccHHHH-----
Confidence 578899999999999999999989999996 456 799999999996410 01223332
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
|..++.++.+++++.++++.|.+++...+||++++|+++|++|..|+++
T Consensus 59 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 59 -------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 5567889999999999999999999999999998999999999999864
No 133
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.21 E-value=3.5e-10 Score=91.91 Aligned_cols=109 Identities=22% Similarity=0.423 Sum_probs=89.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.+|++.|.+++.+.+||++ + + +++|+++.+++.++...... ...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~~l~~~~~~~~~--------~~~~v-------- 58 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD---D-G---RPLGIVTERDILRLLASGPD--------LQTPV-------- 58 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEeHHHHHHHHhcCCC--------CCcCH--------
Confidence 467789999999999999998899999996 2 6 89999999999876643210 11122
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+++|.+++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 59 ----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 59 ----GEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ----HHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 2335667889999999999999999999999999998899999999999864
No 134
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.21 E-value=3.1e-10 Score=92.73 Aligned_cols=111 Identities=22% Similarity=0.412 Sum_probs=90.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.++++.|.+.+.+++||++ +++ +++|+++..++.+.+...... -..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~--------- 60 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVD---EDG---RLVGIFTDGDLRRALEKGLDI-------LTLP--------- 60 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEc---CCC---CEEEEechHHHHHHHhccCcc-------ccCC---------
Confidence 456789999999999999888889999996 345 799999999999876543211 0112
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++++|.+++..+.+++++.++++.|.+++...+||++++|+++|+++..||++
T Consensus 61 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 61 ---VADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred ---HHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 22336667889999999999999999999999999998899999999999864
No 135
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.21 E-value=2.7e-10 Score=92.78 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=88.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++...+||++. +++ +++|+++..+++++...... ..++..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~----- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL----- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH-----
Confidence 4678999999999999999999999999962 225 79999999999987643210 0112221
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+ .++..+.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 63 -------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 -------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3 35788999999999999999999999999998899999999999863
No 136
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=2.3e-10 Score=96.55 Aligned_cols=128 Identities=16% Similarity=0.311 Sum_probs=91.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc--ccccCc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI--CAIPVG 284 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v--~~l~i~ 284 (429)
+++++.+++++.+|++.|.+++.+.+||+| +++ +++|+++..++++++......... ........ .+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d---~~~---~~~G~i~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVD---NEG---RVVGIVSEGDLIRKIYKGKGLFYV-TLLYSVIFLDESKIKK 74 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceEC---CCC---CEEEEEeHHHHHHHHhccCCcccc-cccccccccchHHHHH
Confidence 567899999999999999999999999996 345 799999999999877542211000 00000000 000000
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.....+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 0001234456678899999999999999999999999999997 99999999999874
No 137
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2e-10 Score=95.00 Aligned_cols=119 Identities=24% Similarity=0.500 Sum_probs=91.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..++.+++......... ...........
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~---- 68 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNLP---- 68 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhccC----
Confidence 577899999999999999999999999996 3 6 899999999999876532211100 00011111222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.++|..++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 69 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 69 ---VSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred ---HHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 22335667899999999999999999999999999997 99999999999874
No 138
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=3e-10 Score=96.51 Aligned_cols=129 Identities=15% Similarity=0.216 Sum_probs=92.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccC-CCCCccc---CCcccccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSSLPIL---KLPICAIP 282 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~-~~~~~~l---~~~v~~l~ 282 (429)
++.++.+++++.+|++.|.+++...+||+| +++ +++|+++..++++++....... ......+ ........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVD---DNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEEC---CCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 467789999999999999999999999996 445 7999999999998664221100 0000000 00000000
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.......+.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 001112345567778899999999999999999999999999986 99999999999874
No 139
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.20 E-value=4.2e-10 Score=91.47 Aligned_cols=109 Identities=21% Similarity=0.365 Sum_probs=89.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++.+.+++++.+|++.|.+.+.+.+||++ + + +++|+++..++++........ ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~--------~~~--------- 57 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA--------TVL--------- 57 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc--------ccC---------
Confidence 577899999999999999998999999996 3 5 799999999998755321100 001
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.+.|.+++..+..++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 58 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 58 ---VGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred ---HHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 22335668899999999999999999999999999998899999999999864
No 140
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.20 E-value=3.5e-10 Score=92.88 Aligned_cols=110 Identities=26% Similarity=0.501 Sum_probs=93.4
Q ss_pred CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157 204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 283 (429)
Q Consensus 204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 283 (429)
+.+.++++.++.++.+|+..|.++++..+||++ .. +++|++|.+|+++.+........
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~---~l~Giit~~di~~~~~~~~~~~~--------------- 62 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD----DG---KLVGIITERDILRALAAGGKRLL--------------- 62 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHhccCCccc---------------
Confidence 457899999999999999999999999999995 22 59999999999998765432210
Q ss_pred cccccccCCCCCCCceeecCCCCHHHHHHHHHh-cCCCEEEEECCCC-cEEEEEeHHHH
Q 014157 284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDI 340 (429)
Q Consensus 284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~-~~~~~lpVvd~~g-~lvGivt~~Di 340 (429)
.+.++|..++.++.++.++.++.+.|.+ ++++++||+++++ +++|++|..|+
T Consensus 63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 2333466688999999999999999999 7999999999886 99999999997
No 141
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.19 E-value=5.9e-10 Score=112.05 Aligned_cols=160 Identities=17% Similarity=0.225 Sum_probs=121.9
Q ss_pred hhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhh
Q 014157 102 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 181 (429)
Q Consensus 102 ~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~ 181 (429)
++.++.|+|-+-.++++++.+.|+.++++.+.+++.+.+||++.+..+++|+++..|++..+. . .. .
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~--------~ 255 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KN--------F 255 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CC--------C
Confidence 578899999888899999999999999999999999999999987789999999999975431 0 00 0
Q ss_pred hHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 014157 182 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 261 (429)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~ 261 (429)
.+.. ++ +++..++++.++.++++.|.+++.+.++|+| +.| ..+|++|..||++.+.
T Consensus 256 ~l~~-----------------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---E~G---~~~GiVT~eDileeiv 311 (408)
T TIGR03520 256 DWQS-----------------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD---EYG---GTSGLVTLEDIIEEIV 311 (408)
T ss_pred CHHH-----------------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---CCC---CEEEEEEHHHHHHHHh
Confidence 1111 12 4678999999999999999999999999996 555 6999999999999887
Q ss_pred hhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHH
Q 014157 262 RYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL 314 (429)
Q Consensus 262 ~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m 314 (429)
........ .-...+..+ ......++...++.++.+.+
T Consensus 312 gei~de~d---~~~~~i~~~-------------~~~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 312 GDISDEFD---DEDLIYSKI-------------DDNNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred CCCCCcCC---cCccceEEe-------------CCCeEEEEeccCHHHHHHHh
Confidence 54332110 001111122 12345677888898888877
No 142
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.19 E-value=3e-10 Score=92.69 Aligned_cols=111 Identities=25% Similarity=0.374 Sum_probs=90.4
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.+++++.+|++.|.+++...+||++ +++ +++|+++..++.+++...... -..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~-------~~~~--------- 59 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD---DDG---RLVGIVSLDDIREILFDPSLY-------DLVV--------- 59 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEEC---CCC---CEEEEEEHHHHHHHHhccccc-------ccEE---------
Confidence 567899999999999999999999999996 335 799999999998765321100 0012
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~ 342 (429)
+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ .++++|+++..|++.
T Consensus 60 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 60 ---ASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ---HHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 33346678899999999999999999999999999987 799999999999864
No 143
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.19 E-value=4.5e-10 Score=91.67 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=89.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..+++..+...... ....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~------- 61 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLVE------- 61 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCHH-------
Confidence 467789999999999999999999999996 3 6 799999999998644321100 0012232
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++.+|++.
T Consensus 62 -----~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 62 -----RVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred -----HhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 336667889999999999999999999999999998899999999999863
No 144
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=4.5e-10 Score=91.64 Aligned_cols=110 Identities=22% Similarity=0.384 Sum_probs=88.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHH-HHHhhcccCCCCCcccCCccccccCcc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~-~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
+++++.+++++.+|.+.|.+++.+.+||++ + + +++|+++..+++. .+.... .....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~-------- 59 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGR-------DPDTTT-------- 59 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccC-------CcccCC--------
Confidence 567899999999999999999999999996 3 6 8999999999873 222110 000111
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+++..|+++
T Consensus 60 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 60 ----VGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred ----HHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 23336667889999999999999999999999999998899999999999864
No 145
>PRK11573 hypothetical protein; Provisional
Probab=99.18 E-value=5.3e-10 Score=112.40 Aligned_cols=121 Identities=14% Similarity=0.225 Sum_probs=99.1
Q ss_pred cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157 290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366 (429)
Q Consensus 290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~ 366 (429)
++++|.+ .+++++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+. ......+...
T Consensus 189 v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~~- 260 (413)
T PRK11573 189 VDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLRA- 260 (413)
T ss_pred hhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHhh-
Confidence 5555654 6899999999999999999999999999975 478999999999987543211 1122322211
Q ss_pred CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
.+++.+|+++.++.++++.|.+++.+-..|+| |.|...|+||..||+..++|
T Consensus 261 ----------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 261 ----------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred ----------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence 24788999999999999999999999999999 69999999999999999886
No 146
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.17 E-value=1.1e-09 Score=105.26 Aligned_cols=164 Identities=12% Similarity=0.206 Sum_probs=121.2
Q ss_pred hhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhh
Q 014157 101 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 180 (429)
Q Consensus 101 l~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~ 180 (429)
|...++.|+|-.-.++++++.+.|+.++++.+.+++.+.+||++...++++|+++..|++.++.. ....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~-------- 132 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEA-------- 132 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCc--------
Confidence 35678999998777999999999999999999999999999998766789999999999864421 0000
Q ss_pred hhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHH
Q 014157 181 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 260 (429)
Q Consensus 181 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l 260 (429)
.++.. ++. +++++.++.++.++++.|.+++.+.+||+| +.| .++|++|..||+..+
T Consensus 133 ~~l~~-----------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---e~G---~viGiVTleDIle~i 188 (292)
T PRK15094 133 FSMDK-----------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSGLVTIEDILELI 188 (292)
T ss_pred CCHHH-----------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---CCC---CEEEEeEHHHHHHHH
Confidence 01111 133 455899999999999999999999999996 455 699999999999998
Q ss_pred HhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHH
Q 014157 261 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL 314 (429)
Q Consensus 261 ~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m 314 (429)
...+....... -...+..+ ...-..+...+++.+..+.+
T Consensus 189 vGei~de~d~~--~~~~i~~~-------------~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 189 VGEIEDEYDEE--DDIDFRQL-------------SRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred hCCCccccccc--cccccEEe-------------CCCeEEEEeccCHHHHHHHh
Confidence 86544321100 00112222 12345678888888887776
No 147
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=6e-10 Score=93.36 Aligned_cols=124 Identities=15% Similarity=0.247 Sum_probs=90.4
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++.+.+++++.+|+++|.+.+.+.+||++ +++ +++|++|..++..++........ ........ ....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVD---DNG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEC---CCC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence 567889999999999999999999999996 345 79999999999876533210000 00000000 0000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Di~~ 342 (429)
...+.++|.++++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 1123344777889999999999999999999999999984 4689999999999864
No 148
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=5.1e-10 Score=92.81 Aligned_cols=120 Identities=18% Similarity=0.307 Sum_probs=93.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.++++..+||++ + + +++|+++..++.+.+...+.... ....+. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence 467899999999999999999999999996 3 5 79999999999987654321100 000000 011
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
...+.++|..+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 11234446678999999999999999999999999999998899999999999874
No 149
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=3.5e-10 Score=93.75 Aligned_cols=120 Identities=19% Similarity=0.355 Sum_probs=90.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++.+.+||+| +.+ +++|+++..++++.......... ..... ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ---KAG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence 577899999999999999999999999996 445 79999999999864311100000 00000 001
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
...+.++|..++..+..++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 11233446677899999999999999999999999999998899999999999874
No 150
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=7.5e-10 Score=90.25 Aligned_cols=110 Identities=14% Similarity=0.328 Sum_probs=87.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
.+.++.+++++.+|++.|.+++.+.++|.+ ++ +++|+++..++++++...... ....++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v-------- 60 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDTTV-------- 60 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCH--------
Confidence 467789999999999999888887777763 36 799999999999876532100 011122
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.++|..++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus 61 ----~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 61 ----RAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred ----HHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 333666788999999999999999999999999998 589999999999874
No 151
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.16 E-value=7.3e-10 Score=90.22 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=87.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.++.++.+|++.|.+++...++|++ + + +++|+++..++++.+.... .....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~-------~~~~~~i~------- 60 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDG-------LPSSTPVG------- 60 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCC-------CCCCCCHH-------
Confidence 456789999999999999999999999995 3 5 7999999999987653210 00112222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|..++..+.+++++.++++.|.+++...+||+++ |+++|++|..|+++
T Consensus 61 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 61 -----EIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -----HHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 236667889999999999999999999999999984 89999999999874
No 152
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.15 E-value=8.1e-10 Score=90.61 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=85.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++...+||+|....++ +++|+++..+++... . . ..+++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~---~--------~~~v~------- 60 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D---S--------ETPLS------- 60 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c---c--------CCCHH-------
Confidence 467788999999999999988999999996211146 899999999986311 0 0 11222
Q ss_pred ccccCCCCCCCceeecC--CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~--~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|......+.. ++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus 61 -----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 61 -----EVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred -----HhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 235555666655 999999999999999999999998899999999999864
No 153
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=1.1e-09 Score=89.23 Aligned_cols=110 Identities=22% Similarity=0.396 Sum_probs=87.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+.+.+.+||++ ++ +++|+++..++++.+...... ....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~------- 61 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVD----NE---KPVGIITERDLVKKVVSRNLK------PREVPVG------- 61 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEE----CC---EEEEEEEHHHHHHHHhhccCC------cccCCHH-------
Confidence 567789999999999999999999999996 23 699999999999866432100 0111222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|.+++..+.+++++.++++.|.+.+...+||+|++ +++|+++.+|+++
T Consensus 62 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 62 -----EVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -----HhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 3356678899999999999999999999999999865 9999999999863
No 154
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.14 E-value=8.2e-10 Score=89.47 Aligned_cols=108 Identities=20% Similarity=0.391 Sum_probs=85.7
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..++.+++...... ...++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~------- 60 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVR------- 60 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHH-------
Confidence 567889999999999999999999999996 3 5 799999999999876532110 012222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|.+++..+.+++++.+++++|.+ . ..+||++++|+++|++|.+|+++
T Consensus 61 -----~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 61 -----EVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred -----HHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 2255678889999999999999987 3 34788988899999999999874
No 155
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=1.2e-09 Score=88.28 Aligned_cols=105 Identities=22% Similarity=0.425 Sum_probs=87.0
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++++++.++.++.+|++.|.+++...+||++ + + +++|+++..+++.. . ...++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~------~-------~~~~~~------ 55 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK------D-------PDETVE------ 55 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc------C-------ccccHH------
Confidence 4677899999999999999888888999995 3 5 89999999999741 0 011222
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|...+..+.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 56 ------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 56 ------EIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ------HhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 335567888999999999999999999999999998899999999999864
No 156
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.13 E-value=6.7e-10 Score=94.22 Aligned_cols=109 Identities=21% Similarity=0.329 Sum_probs=80.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccc-------ccccHHHHHhcCCCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL-------SEMTIHQALQLGQDS 369 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l-------~~~~v~~~l~~~~~~ 369 (429)
.+.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++............ ....+.+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 78 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKG--- 78 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhh---
Confidence 4678999999999999999999999999999999999999999998654322110000 001123343210
Q ss_pred CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeC
Q 014157 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA 409 (429)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~ 409 (429)
...+.|..+++++.+++++.+|++.|.+++++++||+|+
T Consensus 79 -~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 79 -ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 001123457889999999999999999999999999984
No 157
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=6.5e-10 Score=93.03 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=84.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh--hcccCCCCCcccCCccccccCc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR--YFRHCSSSLPILKLPICAIPVG 284 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~--~~~~~~~~~~~l~~~v~~l~i~ 284 (429)
+++++.+++++.+|++.|.+++.+.+||++ +.+ +++|+++..|+.+.... ..... ......++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v------ 66 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVD---SDD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSELTV------ 66 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEHHHHhhChhhHHHHHcC---CCchheEH------
Confidence 467889999999999999999999999996 345 79999999999852210 00000 00011222
Q ss_pred ccccccCCCCCCCceee------cCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHH
Q 014157 285 TWVPKIGEPNRRPLAML------RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 342 (429)
Q Consensus 285 ~~~~~v~~~~~~~~~~v------~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~ 342 (429)
.++|.+++..+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 67 ------~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 67 ------ADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ------HHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 23355443332 268899999999999999999999986 79999999999874
No 158
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.13 E-value=7.5e-10 Score=89.78 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=85.2
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++++++.+++++.++++.|.+++...+||++ +.+ +++|+++..+++... ....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~------------~~~~~v~------ 57 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVD---DDG---KLVGIVTNRDLRFET------------DLDKPVS------ 57 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEc---CCC---EEEEEEEhhHeeecc------------cCCCCHH------
Confidence 3567889999999999999999999999996 346 799999999985310 0011222
Q ss_pred cccccCCCCCCCceeecC-CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~-~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|...+..+.. ++++.++++.|.+.+.+.+||++++|+++|++|.+|+++
T Consensus 58 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 58 ------EVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ------HhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 235445566666 999999999999999999999998899999999999864
No 159
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.12 E-value=1.5e-09 Score=87.51 Aligned_cols=111 Identities=25% Similarity=0.487 Sum_probs=90.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++..+.+++++.++++.|.+++.+.+||++ +++ +++|+++.+++++++........ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~--------- 59 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVD---DDG---RLVGIVTERDLLRALAEGGLDPL-------VT--------- 59 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEEC---CCC---CEEEEEeHHHHHHHHHhccCCcc-------cc---------
Confidence 467789999999999999999999999996 335 79999999999987764322110 00
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.+.|..++..+..++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 ---VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ---HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 11225557888899999999999999999999999999899999999999864
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.11 E-value=9.9e-10 Score=112.67 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=95.7
Q ss_pred CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157 204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 283 (429)
Q Consensus 204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 283 (429)
+.++++++.+++++.+|+++|.+++++.+||+|....++ +++|++|..|+... . ....++.+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v-~-----------~~~~~V~e--- 167 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV-N-----------DRETKLSE--- 167 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc-c-----------ccCCcHHH---
Confidence 678999999999999999999999999999996211135 89999999999531 1 11233333
Q ss_pred cccccccCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157 284 GTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346 (429)
Q Consensus 284 ~~~~~~v~~~~~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~ 346 (429)
+|.++ ++++.+++++.+|+++|.+++...+||+|++++++|+||++||++....
T Consensus 168 ---------IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 168 ---------VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ---------HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 36655 7899999999999999999999999999999999999999999976643
No 161
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=1.3e-09 Score=87.71 Aligned_cols=102 Identities=19% Similarity=0.385 Sum_probs=85.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++..+.+++++.++++.|.+++.+.+||++ + + +++|+++..++++.. ...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~Giv~~~~l~~~~-------------~~~~~~------- 54 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---D-G---KLVGIITSRDVRRAH-------------PNRLVA------- 54 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEehHHhhccc-------------ccCCHH-------
Confidence 467789999999999999999999999995 2 5 799999999997521 011222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 341 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~ 341 (429)
++|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus 55 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 55 -----DAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred -----HHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 235667889999999999999999999999999996 9999999999986
No 162
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.10 E-value=5.2e-10 Score=111.50 Aligned_cols=119 Identities=22% Similarity=0.346 Sum_probs=102.0
Q ss_pred CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157 201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 280 (429)
Q Consensus 201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 280 (429)
++.+..+.+++++.+++.+|+.+|.++|++.+.+++ .++ ..+||+|.+|+.+.+....+. ...
T Consensus 152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~---~~~---~~~GIvT~~dl~~~v~~~g~~-------~~~---- 214 (610)
T COG2905 152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD---DSG---PLLGIVTRKDLRSRVIADGRS-------KTQ---- 214 (610)
T ss_pred HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc---CCC---CccceeehHHHHHHHHhcCCC-------ccc----
Confidence 556789999999999999999999999999888886 444 689999999999887653221 122
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157 281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 345 (429)
Q Consensus 281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~ 345 (429)
+|+++|+.++++++..+-+.+|+-+|.+++++++||++ +|+++|++|..||+++..
T Consensus 215 --------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 215 --------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred --------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 34555899999999999999999999999999999996 799999999999998765
No 163
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=1.5e-09 Score=89.68 Aligned_cols=119 Identities=15% Similarity=0.298 Sum_probs=89.7
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++++++++.+|+..|.+.+.+.+||+| +++ +++|+++..++.+........... ... ....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~~---------~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVD---EEG---RLVGIVTDRDLRDASPSPFTTLSE---------HEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEHHHHHHHhhhhcccchh---------hhh-hhhc
Confidence 567889999999999999999999999996 345 799999999998765432211000 000 0000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
...+.++|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 11123336667889999999999999999999999999986 99999999999874
No 164
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.09 E-value=1.5e-09 Score=87.43 Aligned_cols=100 Identities=15% Similarity=0.278 Sum_probs=83.5
Q ss_pred eecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccccc
Q 014157 209 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP 288 (429)
Q Consensus 209 i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~ 288 (429)
+++.+++++.+|++.|.+.+...+||++ + + +++|+++..++.+.. ..++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~--------------~~~~~--------- 53 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENAT--------------YGDVV--------- 53 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhc--------------ccchh---------
Confidence 4678999999999999999999999996 3 6 799999999997521 01122
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|...+.++.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 54 ---~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 54 ---DYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred ---hhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 22555688999999999999999999999999998 699999999999864
No 165
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.09 E-value=2.4e-09 Score=109.10 Aligned_cols=163 Identities=18% Similarity=0.300 Sum_probs=115.6
Q ss_pred EeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCC
Q 014157 139 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 215 (429)
Q Consensus 139 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~ 215 (429)
.+|+..+- ..-+|..++..++......+ .+++.++-. ..++..+ . ....+.++++++.+++
T Consensus 34 ~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~-~~V~~Vk------~-----~~~~~~~~~vtl~~~~ 97 (450)
T TIGR01302 34 NIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA-EQVKRVK------R-----AENGIISDPVTISPET 97 (450)
T ss_pred CCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH-HHHhhhc------c-----ccCceecCceEeCCCC
Confidence 46777542 34578888877776554322 122211111 1111111 1 1234678899999999
Q ss_pred cHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC
Q 014157 216 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 295 (429)
Q Consensus 216 sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~ 295 (429)
++.+|+++|.+++++++||++.+...+ +++|+++.+|++... . ...++.+ +|.
T Consensus 98 tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~d------------vm~ 150 (450)
T TIGR01302 98 TVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSE------------VMT 150 (450)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHH------------hhC
Confidence 999999999999999999997311115 799999999996311 0 1222333 366
Q ss_pred -CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157 296 -RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 344 (429)
Q Consensus 296 -~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~ 344 (429)
.+++++.+++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus 151 ~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 151 REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 4889999999999999999999999999999999999999999999754
No 166
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=1.5e-09 Score=88.28 Aligned_cols=102 Identities=15% Similarity=0.303 Sum_probs=82.5
Q ss_pred cCCCCcHHHHHHHHHhcC-----CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 211 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 211 v~~~~sl~da~~~m~~~~-----i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
+.+++++.++++.|.+++ ...+||++ +++ +++|+++.+++++. . ...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~~l~~~------~-------~~~~v------- 55 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVD---EEG---RLLGVVSLRDLLLA------D-------PDTPV------- 55 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEEC---CCC---CEEEEEEHHHHhcC------C-------CcchH-------
Confidence 578899999999998777 46889995 345 79999999988641 0 01122
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 343 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~ 343 (429)
++++.+++..+.+++++.++++.|.+.+...+||+|++|+++|++|..|+++.
T Consensus 56 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 56 -----SDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred -----HHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 23356678899999999999999999999999999988999999999999863
No 167
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.08 E-value=1.2e-09 Score=111.85 Aligned_cols=110 Identities=21% Similarity=0.261 Sum_probs=90.4
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccc
Q 014157 208 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 287 (429)
Q Consensus 208 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 287 (429)
..++++++|+.+|++.|.++++..+||+|...+++ +++|++|..|+... . .....++++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~~V~d------- 165 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDTKVKD------- 165 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCCCHHH-------
Confidence 36899999999999999999999999997211246 89999999998521 0 012233333
Q ss_pred cccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157 288 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 343 (429)
Q Consensus 288 ~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~ 343 (429)
+|.+ +++++.+++++.+|+++|.+++++.+||+|++++++|+||++|+++.
T Consensus 166 -----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 166 -----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred -----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 3765 78899999999999999999999999999988999999999999874
No 168
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.07 E-value=2.1e-09 Score=110.27 Aligned_cols=115 Identities=24% Similarity=0.276 Sum_probs=94.6
Q ss_pred cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157 203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 282 (429)
Q Consensus 203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 282 (429)
.+..+++++.+++++.+|+++|.+++++.+||++.+..++ +++|+++.+|+.. .. ....+++
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~~V~--- 162 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKSTPVS--- 162 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCCCHH---
Confidence 3567889999999999999999999999999996322235 8999999999862 10 0122333
Q ss_pred CcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157 283 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 344 (429)
Q Consensus 283 i~~~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~ 344 (429)
++|.+ +++++.+++++.+|+++|.+++...+||+|++++++|+||++||++..
T Consensus 163 ---------diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 163 ---------EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred ---------HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 33665 789999999999999999999999999999999999999999998653
No 169
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=2.9e-09 Score=91.27 Aligned_cols=126 Identities=27% Similarity=0.478 Sum_probs=94.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccC----CCCCcccCCcccccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC----SSSLPILKLPICAIP 282 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~----~~~~~~l~~~v~~l~ 282 (429)
+++++.+++++.+|++.|.+++...+||++ + + +++|+++..++++++....... ++.......++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 567899999999999999999999999996 3 5 7999999999998775432100 00011112222221
Q ss_pred Cccc-----------ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 283 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 283 i~~~-----------~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
..| ...+.++|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 11244557778999999999999999999999999999987 99999999999863
No 170
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.1e-10 Score=111.15 Aligned_cols=45 Identities=36% Similarity=0.642 Sum_probs=43.2
Q ss_pred CcccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEEecCCC
Q 014157 1 MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPN 45 (429)
Q Consensus 1 ~~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~~~~~~ 45 (429)
+++||+|.|+|||+|||+|+||++.|+++|..|+.||++.|.+.+
T Consensus 121 ~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~ 165 (289)
T KOG1616|consen 121 ILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPD 165 (289)
T ss_pred eEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCcc
Confidence 478999999999999999999999999999999999999999776
No 171
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.05 E-value=1.4e-09 Score=103.53 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=90.7
Q ss_pred CccCCCC-ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157 201 GKAFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 279 (429)
Q Consensus 201 g~~~~~~-~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~ 279 (429)
+++|.++ +..+.+++++.+|++.|.+.+.+.+||+| +++ +++|+++..|+++.+.... ....+++
T Consensus 158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd---~~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~ 223 (268)
T TIGR00393 158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD---ENN---QLVGVFTDGDLRRALLGGG--------SLKSEVR 223 (268)
T ss_pred HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe---CCC---CEEEEEEcHHHHHHHhcCC--------cccCcHH
Confidence 4467777 99999999999999999999999999996 445 7999999999987543210 1122333
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEe
Q 014157 280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 336 (429)
Q Consensus 280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt 336 (429)
++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 224 ------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 ------------DFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 347778899999999999999999999999999998899999985
No 172
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.05 E-value=1.5e-09 Score=114.38 Aligned_cols=120 Identities=16% Similarity=0.272 Sum_probs=97.5
Q ss_pred CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157 201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 280 (429)
Q Consensus 201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 280 (429)
+++|.+++.++++++++.++++.|.+++.+.+||+| +++ +++|+++.+|+.+.+..... ....+
T Consensus 450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD---~~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~--- 513 (574)
T PRK01862 450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVD---DDG---RFRGAVALKDITSDLLDKRD-------TTDKT--- 513 (574)
T ss_pred HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEc---CCC---eEEEEEEHHHHHHHhhcccc-------cccch---
Confidence 446788889999999999999999999999999996 455 79999999999875432100 00112
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHHHHh
Q 014157 281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK 345 (429)
Q Consensus 281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~Di~~~~~ 345 (429)
+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|++|++|+.+...
T Consensus 514 ---------v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 514 ---------AADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ---------HHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 334477788999999999999999999999999999876 58999999999997654
No 173
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.04 E-value=3.4e-09 Score=85.80 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=85.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--CCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 284 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~--~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~ 284 (429)
....+.+++++.++...|.+.+...+||++ .. ++ +++|+++.+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~---~~~G~v~~~dl~~~~~~---------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESP---RLVGYILRSQLVVALKN---------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCC---EEEEEEeHHHHHHHHHH----------------------
Confidence 456789999999999999998888999996 22 46 79999999999865432
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|++|++|+.+
T Consensus 56 --------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 --------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred --------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 1445778999999999999999999999999995 789999999999864
No 174
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=3.2e-09 Score=87.50 Aligned_cols=113 Identities=12% Similarity=0.189 Sum_probs=86.6
Q ss_pred CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157 207 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 285 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 285 (429)
++.++.+++++.+|++.|...+ .+.+||++ + + +++|+++..++++++...+... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~--------- 61 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKK--------- 61 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCC---------
Confidence 5667899999999999998877 88999996 3 6 7999999999987554321000 00011
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC---CEEEEECCCCcEEEEEeHHHHHH
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQV---SSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~---~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
.++++|..++..+.+++++.++++.|.+++. ...+|++++|+++|++|..|+++
T Consensus 62 ---~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 62 ---PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred ---cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 2334477788999999999999999988775 34568888899999999999864
No 175
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.97 E-value=7.1e-09 Score=105.14 Aligned_cols=113 Identities=19% Similarity=0.335 Sum_probs=95.8
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccc
Q 014157 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 374 (429)
Q Consensus 296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~ 374 (429)
.++..++.+.++.++.+.+.+++++++||.+ +.+.++|++..+|++.....+.. . ......
T Consensus 216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~------------ 277 (429)
T COG1253 216 TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL------------ 277 (429)
T ss_pred ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc------------
Confidence 3688899999999999999999999999998 56799999999999986655321 0 111111
Q ss_pred ccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 375 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 375 ~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
-.+++.++++.++.++++.|.+.+.|-..|+| |.|.+.|+||..||+..++|
T Consensus 278 --~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 278 --VRPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred --ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence 12788999999999999999999999999999 69999999999999999886
No 176
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.1e-09 Score=105.04 Aligned_cols=115 Identities=16% Similarity=0.298 Sum_probs=100.1
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157 289 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 363 (429)
Q Consensus 289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l 363 (429)
.++.+|...++++..+.|+.+++..+++ .....+.|+|++++++|+++.++++..-. +..+.++|
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~im 202 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKDLM 202 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHHHh
Confidence 4666688999999999999999999884 35688999999999999999999874221 35678877
Q ss_pred hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
.+.++++.++++..++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus 203 -------------~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi 252 (451)
T COG2239 203 -------------EDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI 252 (451)
T ss_pred -------------cccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence 45699999999999999999999999999999 599999999999998765
No 177
>PRK11573 hypothetical protein; Provisional
Probab=98.94 E-value=3.4e-08 Score=99.46 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=108.5
Q ss_pred hhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhh
Q 014157 102 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 181 (429)
Q Consensus 102 ~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~ 181 (429)
++.++.|+|-+-.+++.++.+.|+.++++.+.+++.+..||++.+..+++|++...|++..+.. +...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----~~~~-------- 252 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF-------- 252 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc----cCcC--------
Confidence 5788999999999999999999999999999999999999999877899999999999864421 0111
Q ss_pred hHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 014157 182 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 261 (429)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~ 261 (429)
....+.+ ..+++..++++.++.++++.|.+++.|-+.|+| +.| ...|++|..||+..+.
T Consensus 253 ~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleDilEeiv 311 (413)
T PRK11573 253 TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILEEIV 311 (413)
T ss_pred CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHHHHHHHh
Confidence 1111111 235788999999999999999999999999997 556 6999999999999888
Q ss_pred hhccc
Q 014157 262 RYFRH 266 (429)
Q Consensus 262 ~~~~~ 266 (429)
.....
T Consensus 312 Gei~d 316 (413)
T PRK11573 312 GDFTT 316 (413)
T ss_pred CCCCc
Confidence 66543
No 178
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.93 E-value=7.3e-09 Score=97.66 Aligned_cols=113 Identities=15% Similarity=0.305 Sum_probs=95.6
Q ss_pred ccCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157 202 KAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 279 (429)
Q Consensus 202 ~~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~ 279 (429)
++|. .....+.+++++.+-.++-.+.+..|.||+| ... +++|++|.+|++.. .-+.++
T Consensus 192 di~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn---~~~---kvvGvVt~rDv~~~-------------~~~t~i- 251 (432)
T COG4109 192 DIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVN---RSM---KVVGVVTMRDVLDK-------------KPSTTI- 251 (432)
T ss_pred HhccccccceeccccccHHHHHHHHHHcCCCccceec---ccc---eEEEEEEehhhhcC-------------CCCccH-
Confidence 3444 6677889999999999999999999999996 444 79999999999741 112233
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157 280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 345 (429)
Q Consensus 280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~ 345 (429)
..+|+++++++.+.+++..+.++|.=.++.-+||+|++.+++|+||++|++..+.
T Consensus 252 -----------eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 252 -----------EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred -----------HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 3348889999999999999999999999999999999999999999999997654
No 179
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.92 E-value=2.5e-09 Score=76.33 Aligned_cols=54 Identities=30% Similarity=0.501 Sum_probs=50.3
Q ss_pred ccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 375 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 375 ~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
+|.++++++++++++.++++.|.+++++++||+| ++|+++|+||.+||++++++
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence 4577999999999999999999999999999999 58999999999999999864
No 180
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.91 E-value=2.9e-08 Score=80.06 Aligned_cols=104 Identities=23% Similarity=0.400 Sum_probs=84.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
++.++.++.++.+|+..|.+.+...+||++ +.+ +++|+++..++++.. . ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~g~v~~~~l~~~~-----~--------~~~~~------- 55 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVK---KSG---ELVGIITRKDLLRNP-----E--------EEQLA------- 55 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhcc-----c--------cchHH-------
Confidence 467888999999999999998889999996 335 799999999997410 0 01122
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
++|..++.++..++++.++++.|.+++.+.+||+|+ |+++|+++..|+++
T Consensus 56 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 56 -----LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -----HHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 224557888999999999999999999999999984 79999999999864
No 181
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.88 E-value=1.7e-08 Score=103.48 Aligned_cols=117 Identities=12% Similarity=0.177 Sum_probs=91.6
Q ss_pred CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157 200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 279 (429)
Q Consensus 200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~ 279 (429)
++++|.+++.++.+++++.+|++.|.+++++.+||+| +++ +++|+++..|+++.+..... ....++.
T Consensus 337 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~ 403 (454)
T TIGR01137 337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT---EAG---KVLGSVTLRELLSALFAGKA-------NPDDAVS 403 (454)
T ss_pred HHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHhccCC-------CcCCCHH
Confidence 3457888999999999999999999999999999996 345 79999999999886543100 0112233
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157 280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 344 (429)
Q Consensus 280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~ 344 (429)
++|.+++.++.+++++.+++++|.+++ .++|+++++++|+||++|+++.+
T Consensus 404 ------------~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 404 ------------KVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ------------HhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 336678889999999999999998754 35555579999999999998753
No 182
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.84 E-value=3e-08 Score=84.01 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=78.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc-ccCCccccccCcc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILKLPICAIPVGT 285 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~-~l~~~v~~l~i~~ 285 (429)
.++++.+++++.+|++.|.+++...+||+| +.+ +++|++|..|+++++............ ...... ..+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD---~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~v~~ 73 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD---SDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT--CLVSS 73 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHHHHhhccccccccchhhccccc--ccHHH
Confidence 567899999999999999999999999996 446 799999999999877542111000000 000000 00001
Q ss_pred ccc--ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC
Q 014157 286 WVP--KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 328 (429)
Q Consensus 286 ~~~--~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~ 328 (429)
.+. .+.+.|..+++++.+++++.+|++.|.+++++++||+|+.
T Consensus 74 i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 74 VCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred HhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 110 0112245678899999999999999999999999999853
No 183
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.83 E-value=1.9e-07 Score=92.33 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=91.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~ 376 (429)
......++.+..++++.|...+...+.|+|+++++.|.++.+++....... .++.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~------------- 308 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVL------------- 308 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhh-------------
Confidence 344566777899999999999999999999999999999999987655431 2355544
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~ 428 (429)
.....++.++++|.+++..|.+++.. +|||| ++|+++|+||+.++++++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred ccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence 34677899999999999999999988 99999 5899999999999999885
No 184
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.83 E-value=8.8e-09 Score=73.48 Aligned_cols=55 Identities=29% Similarity=0.507 Sum_probs=50.6
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157 291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 345 (429)
Q Consensus 291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~ 345 (429)
+++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++.+.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 3457889999999999999999999999999999999999999999999998653
No 185
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.82 E-value=3.9e-09 Score=81.53 Aligned_cols=38 Identities=32% Similarity=0.507 Sum_probs=34.9
Q ss_pred cccCCceeEEEEEECCeee-ecCCCCc-ccCCCCCcceEE
Q 014157 2 FFYIVHYVQYKFCVDGEWR-HDEHQPF-ISSEYGIVNTVL 39 (429)
Q Consensus 2 ~~l~~g~~~ykf~vdg~w~-~~~~~~~-~~~~~g~~~n~~ 39 (429)
++|++|.|+|||+|||+|. +||..+. ..|.+|+.||+|
T Consensus 42 ~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v~ 81 (82)
T cd02861 42 VELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAVF 81 (82)
T ss_pred EeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceEc
Confidence 5799999999999999999 9999985 789999999987
No 186
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.76 E-value=2.9e-08 Score=88.77 Aligned_cols=112 Identities=16% Similarity=0.396 Sum_probs=98.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~ 375 (429)
..+++..+.++.+++..+.+..+|++||+.+ .+.+.|++-.+|++..+..... ...+.+++
T Consensus 78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------ 139 (293)
T COG4535 78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------ 139 (293)
T ss_pred HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence 5789999999999999999999999999965 5689999999999997655321 24577766
Q ss_pred cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
+|.+.|+++-.+...++-+...+.|...||| |-|-+-|.||..||+..++|
T Consensus 140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred --ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence 4788999999999999999999999999999 69999999999999999876
No 187
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.70 E-value=1.2e-07 Score=90.59 Aligned_cols=122 Identities=15% Similarity=0.255 Sum_probs=101.2
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157 289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 365 (429)
Q Consensus 289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~ 365 (429)
+|.|+|.+ .+..++.+++.+++.+.+...-+.++|+..+ -+.++|++..+|+++++.++.. .+-.++++.
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d~~~~ 273 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKEDILRA 273 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhHHHHH
Confidence 35666754 5889999999999999999999999999943 4579999999999998866431 223333322
Q ss_pred CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
-.++.+++.++++.+-+..|.+++-|--.||| |-|.+.|+||+.||+..++|
T Consensus 274 -----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 274 -----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 23688999999999999999999999999999 69999999999999999876
No 188
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.4e-07 Score=91.66 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=88.0
Q ss_pred ecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCc
Q 014157 301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 380 (429)
Q Consensus 301 v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~ 380 (429)
..++.+..+++..|...+.+.++|+|++++++|+++..++.+....+ .++.+.+ ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence 34667889999999999999999999999999999999997654431 2355544 3357
Q ss_pred eEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157 381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428 (429)
Q Consensus 381 ~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~ 428 (429)
.++.++++|.+++..+.+.... +|||| ++|+++|+||..++++.+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALD 393 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence 7899999999999999998766 99999 5999999999999999875
No 189
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.57 E-value=8.4e-07 Score=90.11 Aligned_cols=130 Identities=18% Similarity=0.341 Sum_probs=108.0
Q ss_pred hhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhh
Q 014157 102 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 181 (429)
Q Consensus 102 ~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~ 181 (429)
.++++-+.|-+...++.++.+.++.++++.+.+++.+..||++.....++|++...|++....... ....
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~---~~~~------- 273 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ---SDLD------- 273 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc---cccc-------
Confidence 578899999888999999999999999999999999999999977789999999999987653211 0000
Q ss_pred hHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 014157 182 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 261 (429)
Q Consensus 182 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~ 261 (429)
.. . .-++++.+++..++.++++.|.+.+.|-..|+| +-| ...|++|..||+..+.
T Consensus 274 -~~------~------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---EyG---~~~GlVTleDIiEeIv 328 (429)
T COG1253 274 -LR------V------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---EYG---GVEGLVTLEDIIEEIV 328 (429)
T ss_pred -hh------h------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---cCC---CeEEEeEHHHHHHHHh
Confidence 00 0 123888999999999999999999999999997 556 6999999999999888
Q ss_pred hhccc
Q 014157 262 RYFRH 266 (429)
Q Consensus 262 ~~~~~ 266 (429)
..+..
T Consensus 329 Gei~d 333 (429)
T COG1253 329 GEIPD 333 (429)
T ss_pred CCCcC
Confidence 75543
No 190
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.56 E-value=1.5e-07 Score=90.54 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=92.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 373 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~ 373 (429)
+++.+.++.++.++++....++++.+||+.+ .++++|+||.+|+-.+ .+. ...+.++|
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~vm---------- 177 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSDVM---------- 177 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhhhc----------
Confidence 6788999999999999999999999999964 4689999999999766 221 35567766
Q ss_pred cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
+.+.++.+.+.+|.++-++|.+++...||||| ++|.++.+|+++||.+.
T Consensus 178 ---t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 178 ---TKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN 226 (503)
T ss_pred ---ccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence 45668889999999999999999999999999 59999999999999875
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.43 E-value=3.5e-07 Score=92.33 Aligned_cols=149 Identities=19% Similarity=0.339 Sum_probs=111.9
Q ss_pred ccccccCccccc-------ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC-----CCcEEEEEeHHHHHHHH
Q 014157 277 PICAIPVGTWVP-------KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-----NDSLLDIYCRSDITALA 344 (429)
Q Consensus 277 ~v~~l~i~~~~~-------~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-----~g~lvGivt~~Di~~~~ 344 (429)
.++.++.-.|.+ .++++|..+++++..-+.+..+.+.+....++++||+|+ .+++.|+|-++.++.+.
T Consensus 564 ~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL 643 (762)
T KOG0474|consen 564 QLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL 643 (762)
T ss_pred hccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence 445566555543 367899999999999999999999999999999999985 15899999999999877
Q ss_pred hccccccc--ccccc------cHHHHHhcCCC---C----------CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCE
Q 014157 345 KDKAYAHI--NLSEM------TIHQALQLGQD---S----------YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR 403 (429)
Q Consensus 345 ~~~~~~~l--~l~~~------~v~~~l~~~~~---~----------~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~ 403 (429)
+++.+... +..+. +..++.....+ . -....+|.+.++++.+++++.+++..+..-+.|+
T Consensus 644 ~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRh 723 (762)
T KOG0474|consen 644 KKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRH 723 (762)
T ss_pred HhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhccee
Confidence 76554321 11112 22222211000 0 0011368889999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEeHHHHHHH
Q 014157 404 LVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 404 l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
+.||+ ...+++|++|++|+.++
T Consensus 724 LlVv~-~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 724 LLVVP-KTNRVVGILTRKDLARY 745 (762)
T ss_pred EEEec-CCCceeEEEehhhhhhH
Confidence 99999 58889999999999854
No 192
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.36 E-value=9.5e-06 Score=77.77 Aligned_cols=130 Identities=19% Similarity=0.309 Sum_probs=108.0
Q ss_pred hccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 014157 103 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT 182 (429)
Q Consensus 103 ~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~ 182 (429)
.-|+-|+|-+.+.+..+|.+.|.++..+.+...-...+|||..+..+++|++-..|+++++.+.. +++.+ +
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~-----d 269 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKE-----D 269 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHh-----H
Confidence 56788888888999999999999999999999999999999988888999999999998884321 12111 1
Q ss_pred HHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh
Q 014157 183 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 262 (429)
Q Consensus 183 i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~ 262 (429)
+.. .-.+++.++..+++.+-+..+.+++-|-..|+| +-| .+.|++|.+||+.-+..
T Consensus 270 ~~~------------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 270 ILR------------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDILEEIVG 325 (423)
T ss_pred HHH------------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHHHHHHhc
Confidence 111 124678899999999999999999999899997 667 89999999999998887
Q ss_pred hcc
Q 014157 263 YFR 265 (429)
Q Consensus 263 ~~~ 265 (429)
.|.
T Consensus 326 dft 328 (423)
T COG4536 326 DFT 328 (423)
T ss_pred ccc
Confidence 665
No 193
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.31 E-value=2.7e-06 Score=82.02 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=115.7
Q ss_pred cEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCC
Q 014157 138 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 214 (429)
Q Consensus 138 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~ 214 (429)
...|+..+ ...-+|.++-..++..+..-+ .+-+.+ .....+..|+..+..+ ..+++.+.|+
T Consensus 61 l~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe-~QA~~v~~vK~~~~g~-----------~~~p~v~sp~ 124 (503)
T KOG2550|consen 61 LNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPE-DQADMVRRVKNYENGF-----------INNPIVISPT 124 (503)
T ss_pred ccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHH-HHHHHHHHHHHhhccc-----------ccCCcccCCc
Confidence 33576653 345577777776665544211 222222 2223456666554433 4567789999
Q ss_pred CcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCC
Q 014157 215 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 294 (429)
Q Consensus 215 ~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~ 294 (429)
.++.++++.-..+++..+||.....-. ++++|++|.+||- |+.++ ... +.++|
T Consensus 125 ~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi~-f~~~~-----------~~~------------~~~vm 177 (503)
T KOG2550|consen 125 TTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDIQ-FLEDN-----------SLL------------VSDVM 177 (503)
T ss_pred ccchhhhhhcccccccccccccCCccc---ceeEEEEehhhhh-hhhcc-----------cch------------hhhhc
Confidence 999999999999999999999422222 3899999999984 44211 111 33447
Q ss_pred CCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 343 (429)
Q Consensus 295 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~ 343 (429)
.+..++.....++.++-+++.+.+...+||||++|+++.++++.||.+.
T Consensus 178 t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 178 TKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 7777889999999999999999999999999999999999999999763
No 194
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.28 E-value=1.5e-05 Score=78.89 Aligned_cols=110 Identities=11% Similarity=0.236 Sum_probs=87.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
......++.+..+++..|...+...+.|++ +.+ ++.|.++.+++..+.... ..+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~----- 307 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVD---RQN---KLVGVVDVESIKQARKKA------------QGLQDV----- 307 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEc---CCC---CEEEEEeHHHHHHHhhcC------------Cchhhh-----
Confidence 334566777899999999999999999996 444 799999999987655321 011111
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 347 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~ 347 (429)
+.....++.+++++.+++..|.+++.. +||+|++|+++|+||+.+++..+...
T Consensus 308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 334567899999999999999999988 99999999999999999999876543
No 195
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=3.9e-05 Score=76.91 Aligned_cols=105 Identities=12% Similarity=0.175 Sum_probs=84.0
Q ss_pred cCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccccccc
Q 014157 211 AGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI 290 (429)
Q Consensus 211 v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v 290 (429)
..++.+..+|+..|..++...+.|+| +.+ +++|+++..++.+..... .++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~--------- 342 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIE---RGN---KFVGAVSIDSLKTALTQQ------------QGLDAA--------- 342 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEc---CCC---cEEEEEeHHHHHhhhhcC------------Cchhhh---------
Confidence 44677899999999999999999996 555 799999999997654311 111111
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157 291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346 (429)
Q Consensus 291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~ 346 (429)
+.....++.+++++.+++..+.+.... +||+|++|+++|+|+..++++.+..
T Consensus 343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 343 ---LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ---hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 334567899999999999999987665 9999999999999999999987654
No 196
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.98 E-value=6.9e-05 Score=67.50 Aligned_cols=129 Identities=14% Similarity=0.270 Sum_probs=104.8
Q ss_pred hccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 014157 103 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT 182 (429)
Q Consensus 103 ~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~ 182 (429)
..++.|.|-..++++++..+.++.+.+..+.+...+.-||+..++..+.|+|-+.|++.++. ++.... .
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F--------~ 134 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPF--------D 134 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCcccc--------c
Confidence 34555666666799999999999999999999999999999988889999999999998763 211111 1
Q ss_pred HHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh
Q 014157 183 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR 262 (429)
Q Consensus 183 i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~ 262 (429)
++. +-+|.+.++++-.+...++-+..++.|...|+| +-| -+-|++|..||+..+..
T Consensus 135 i~~------------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD---EfG---gVsGLVTIEDiLEqIVG 190 (293)
T COG4535 135 IKE------------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID---EFG---GVSGLVTIEDILEQIVG 190 (293)
T ss_pred HHH------------------hcccceecccchhHHHHHHHHHhhcCceEEEEe---ccC---CeeeeEEHHHHHHHHhc
Confidence 211 247889999999999999999999999999997 455 59999999999999876
Q ss_pred hccc
Q 014157 263 YFRH 266 (429)
Q Consensus 263 ~~~~ 266 (429)
....
T Consensus 191 dIED 194 (293)
T COG4535 191 DIED 194 (293)
T ss_pred cccc
Confidence 5543
No 197
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.96 E-value=2.2e-05 Score=79.67 Aligned_cols=144 Identities=14% Similarity=0.205 Sum_probs=105.0
Q ss_pred CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhh-cccC-CCC--Ccc-
Q 014157 199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY-FRHC-SSS--LPI- 273 (429)
Q Consensus 199 ~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~-~~~~-~~~--~~~- 273 (429)
.++++|+++++++..-+.+....+.+.....+..||+|.. +.+....+.|++-.+.++..+... +.+. +.. .+.
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~-~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~ 661 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEP-PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVR 661 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCC-CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchh
Confidence 4567899999999999999999999999999999999853 222123789999999998877543 2111 000 000
Q ss_pred ----------cCCccccccCccccc----ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHH
Q 014157 274 ----------LKLPICAIPVGTWVP----KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD 339 (429)
Q Consensus 274 ----------l~~~v~~l~i~~~~~----~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~D 339 (429)
-..+++++.+..... ....+|++.+.++.+++++..++.++++-+.+++.||+...+.+|++|++|
T Consensus 662 ~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D 741 (762)
T KOG0474|consen 662 RKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKD 741 (762)
T ss_pred hcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhh
Confidence 011222322221110 123567888999999999999999999999999999998888999999999
Q ss_pred HHHH
Q 014157 340 ITAL 343 (429)
Q Consensus 340 i~~~ 343 (429)
+.+.
T Consensus 742 ~~~~ 745 (762)
T KOG0474|consen 742 LARY 745 (762)
T ss_pred hhhH
Confidence 9854
No 198
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.88 E-value=2.8e-05 Score=63.72 Aligned_cols=53 Identities=26% Similarity=0.454 Sum_probs=47.8
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
+.++|.+++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+||..
T Consensus 60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 45557778899999999999999999999999999999999999999999863
No 199
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.79 E-value=7.2e-05 Score=50.00 Aligned_cols=47 Identities=38% Similarity=0.578 Sum_probs=42.8
Q ss_pred ceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 380 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 380 ~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
+.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 467899999999999999999999999994 78999999999998875
No 200
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.78 E-value=5.8e-05 Score=61.82 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=44.0
Q ss_pred CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||.+
T Consensus 65 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~ 112 (113)
T cd04597 65 NRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE 112 (113)
T ss_pred CCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence 55788999999999999999999999999999 4899999999999864
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.00031 Score=71.71 Aligned_cols=128 Identities=13% Similarity=0.199 Sum_probs=88.6
Q ss_pred ceeecCC-CCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHhcccccccccccccH------HHHHhcCCC
Q 014157 298 LAMLRPS-ASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTI------HQALQLGQD 368 (429)
Q Consensus 298 ~~~v~~~-~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v------~~~l~~~~~ 368 (429)
+..+..+ +++.+...+|.+..++.+||+= +..+++|++.++++...+.......--....+. ..+.....+
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 5555554 8999999999999999999983 366899999999987544321100000000111 111110011
Q ss_pred CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157 369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427 (429)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l 427 (429)
.-....+|.-.+.++...++..-+++++.+-+++.+.|.. +|++.|+||..|++++.
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 1111235677889999999999999999999999887776 89999999999999874
No 202
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.62 E-value=0.00021 Score=47.66 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=42.1
Q ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157 298 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 344 (429)
Q Consensus 298 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~ 344 (429)
+.++.+++++.++++.|.+++.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45678899999999999999999999999889999999999997653
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.30 E-value=0.0034 Score=62.61 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=64.3
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHH
Q 014157 317 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 396 (429)
Q Consensus 317 ~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m 396 (429)
++.+.+.|+|. |+++..+...+..... ..++.+ + .....++++++++.+++..+
T Consensus 298 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~ 351 (382)
T TIGR03415 298 RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-------------EAAPTVINPDTLMRDVLAAR 351 (382)
T ss_pred cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-------------cccCcccCCCCcHHHHHHHH
Confidence 78899999985 8888877665443211 123444 2 23577899999999999999
Q ss_pred HcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 397 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 397 ~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
.+.+. -++|+| +|+++|+|++.+++.+|.+
T Consensus 352 ~~~~~-~~~v~~--~~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 352 HRTGG-AILLVE--NGRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hcCCC-CeEEee--CCeEEEEEeHHHHHHHHhc
Confidence 98875 488998 4999999999999999864
No 204
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.15 E-value=0.002 Score=61.17 Aligned_cols=164 Identities=18% Similarity=0.285 Sum_probs=110.7
Q ss_pred CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH-----hhcccCCCCCcccCCcc
Q 014157 204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC-----RYFRHCSSSLPILKLPI 278 (429)
Q Consensus 204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~-----~~~~~~~~~~~~l~~~v 278 (429)
..+.++.++- .|.||+++ -+++.++ ++| +++.+=|..+|+..-+ .++.... +.
T Consensus 214 l~KTIvFitH--DLdEAlri-----G~rIaim----kdG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~--------~~ 271 (386)
T COG4175 214 LKKTIVFITH--DLDEALRI-----GDRIAIM----KDG---EIVQVGTPEEILLNPANDYVRDFVRNVD--------RS 271 (386)
T ss_pred hCCeEEEEec--CHHHHHhc-----cceEEEe----cCC---eEEEeCCHHHHHcCccHHHHHHHHhcCC--------hh
Confidence 3556666654 47777754 3568888 677 8999999999985332 2221110 00
Q ss_pred ccccCcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccccc
Q 014157 279 CAIPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSE 356 (429)
Q Consensus 279 ~~l~i~~~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~ 356 (429)
+-+ ++.++|.+ ....-.....-..++..+.....+.+.+++..++.+|+++..++....
T Consensus 272 ~Vl-------tA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------ 332 (386)
T COG4175 272 RVL-------TAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA------------ 332 (386)
T ss_pred hee-------eHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc------------
Confidence 001 22334542 111222223334677888888877888888778899999998876531
Q ss_pred ccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157 357 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429 (429)
Q Consensus 357 ~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~ 429 (429)
+ ..++.++..++++.+.+..+.+... .++||| ++++++|+|++..++.+|.+
T Consensus 333 ------~-------------~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 ------L-------------IDDVLTVDADTPLSEILARIRQAPC-PVAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ------c-------------cccccccCccchHHHHHHHHhcCCC-ceeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 1 2357788999999999998888775 588999 69999999999999999864
No 205
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.87 E-value=0.0013 Score=51.02 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=27.0
Q ss_pred ccCCceeEEEEEECCeeeecCCCCcccCCCCCc
Q 014157 3 FYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIV 35 (429)
Q Consensus 3 ~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~ 35 (429)
+|.+|.|+|+|.|||.|..||..|...=..+..
T Consensus 48 ~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~ 80 (85)
T cd02858 48 PLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVD 80 (85)
T ss_pred CCCCcEEEEEEEECCeEecCCCCCceeeccccc
Confidence 478899999999999999999998766333443
No 206
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.015 Score=59.71 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=93.0
Q ss_pred CceecCCC-CcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCC---CCcccCCcccccc
Q 014157 207 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLPILKLPICAIP 282 (429)
Q Consensus 207 ~~i~v~~~-~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~---~~~~l~~~v~~l~ 282 (429)
+++.+..+ .++.|...+|.+...+..||+- ++++. .++|.+..+++...+......... .......+.....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl-~~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVL-SEDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEE-ccccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666665 8999999999999999999985 34444 799999999998776532111000 0001122222111
Q ss_pred Ccccc-cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157 283 VGTWV-PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 344 (429)
Q Consensus 283 i~~~~-~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~ 344 (429)
-+.-. -..+++|...+.++...++...+++++++-+.+.+.|. ++|++.|+||.+|+++..
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 11111 12445677788999999999999999999999988776 589999999999998764
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.40 E-value=0.11 Score=48.28 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=72.3
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc--------c-ccccccccccHHHHHhcCC
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK--------A-YAHINLSEMTIHQALQLGQ 367 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~--------~-~~~l~l~~~~v~~~l~~~~ 367 (429)
.++.++.| +.||+++. .++.|.+ +|+++-+-+..+|+...++. . .....+...++.+.+....
T Consensus 188 TivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~ 259 (309)
T COG1125 188 TIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGE 259 (309)
T ss_pred EEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccc
Confidence 56777766 68888775 4688887 79999999988887432211 0 0001122334444443211
Q ss_pred CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
.. .--.........+++..+...+...+|||| ++|+++|.||..+|+..
T Consensus 260 ~~---------~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 260 PA---------DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc---------cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence 00 011123334445588888899999999999 59999999999999875
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.062 Score=56.50 Aligned_cols=59 Identities=10% Similarity=0.186 Sum_probs=49.7
Q ss_pred ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhc
Q 014157 202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 264 (429)
Q Consensus 202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~ 264 (429)
++|.+++..+..+.|..|.-+.+..+.++.+|+++ +.++. -++|.+..+.+...+.++.
T Consensus 592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~-s~esm---iLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE-SKESM---ILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeccccceeeeccCcHHHHHHHHHhCccceecccc-Ccccc---eeeehhHHHHHHHHHHhhc
Confidence 46899999999999999977777766699999997 44555 7999999999999887654
No 209
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=94.74 E-value=0.025 Score=42.82 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=24.5
Q ss_pred ccCC-ceeEEEEEECCeeeecCCCCcccCCCCC
Q 014157 3 FYIV-HYVQYKFCVDGEWRHDEHQPFISSEYGI 34 (429)
Q Consensus 3 ~l~~-g~~~ykf~vdg~w~~~~~~~~~~~~~g~ 34 (429)
+++. |.|.|+|.|||.|.+++.+|...+....
T Consensus 46 ~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~ 78 (83)
T cd02688 46 PLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSG 78 (83)
T ss_pred cCCCCCCeEEEEEEeCCCCCCCCChhhhcCCcc
Confidence 4455 9999999999999999988555544333
No 210
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.48 E-value=0.3 Score=45.46 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc-ccCCccccccCc
Q 014157 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILKLPICAIPVG 284 (429)
Q Consensus 206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~-~l~~~v~~l~i~ 284 (429)
+.++.|+- .+.||+++ ..++.|+ ..| +++.+-++.+|++.-+..|-...-... .....+....+.
T Consensus 187 kTivfVTH--DidEA~kL-----adri~vm----~~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~ 252 (309)
T COG1125 187 KTIVFVTH--DIDEALKL-----ADRIAVM----DAG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVA 252 (309)
T ss_pred CEEEEEec--CHHHHHhh-----hceEEEe----cCC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHH
Confidence 34444443 35565544 2457777 356 899999999998755444322100000 000111111111
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157 285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 342 (429)
Q Consensus 285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~ 342 (429)
..+... ....--.+.......+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus 253 ~~~~~~---~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 253 DAVRRG---EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred Hhhccc---ccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 111000 0000111223334456777888889999999999999999999999875
No 211
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.56 E-value=0.23 Score=47.62 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCC
Q 014157 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRR 296 (429)
Q Consensus 217 l~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~ 296 (429)
-..++..+.+.....+.+++ ..+ +.+|+++..+..+. .+..
T Consensus 295 ~~~al~~~~~~~~~~~~~~~---~~~---~~~g~v~~~~~~~~---------------------------------~~~~ 335 (386)
T COG4175 295 PRVALKLLRDEGREYGYAVD---RGN---KFVGVVSIDSLVKA---------------------------------ALID 335 (386)
T ss_pred cchhhhhhhhccchhhHHHh---ccC---ceeeEEeccchhcc---------------------------------cccc
Confidence 34556666666555555553 333 57777777776542 0223
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 345 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~ 345 (429)
.+.++..++++.+.+..+.+.. ..++|+|++++++|++++..++.++.
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence 5677889999999988887655 47899999999999999999998664
No 212
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=88.13 E-value=1.1 Score=44.81 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=40.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 345 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~ 345 (429)
...++.+++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 46688999999999998887764 5888885 99999999999987653
No 213
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=78.52 E-value=2.8 Score=44.65 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=51.5
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHhc
Q 014157 286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKD 346 (429)
Q Consensus 286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Di~~~~~~ 346 (429)
+.-.|+++|.+++..+..++|..|..+.+....++.+|+||+ +.-++|.|.++.+..++..
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 344688999999999999999999998887666999999986 4468999999999876644
No 214
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=67.70 E-value=7 Score=32.11 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.6
Q ss_pred cccCCc-eeEEEEEEC
Q 014157 2 FFYIVH-YVQYKFCVD 16 (429)
Q Consensus 2 ~~l~~g-~~~ykf~vd 16 (429)
++||+| .++|||++.
T Consensus 52 v~lp~~~~veYkY~~~ 67 (120)
T cd05814 52 IELPRGVDFQYRYFVA 67 (120)
T ss_pred EEECCCCeEEEEEEEE
Confidence 568887 899999993
No 215
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=62.73 E-value=6.3 Score=30.46 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=23.5
Q ss_pred cccCCceeEEEEEECCeeeecCCCCccc
Q 014157 2 FFYIVHYVQYKFCVDGEWRHDEHQPFIS 29 (429)
Q Consensus 2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~ 29 (429)
++|+||+|.-.-.. |.|.|-|..|.+.
T Consensus 57 I~L~PG~htLtl~~-~d~~h~~~~~~v~ 83 (87)
T PF14347_consen 57 IELPPGKHTLTLQL-GDGDHVPHDPPVM 83 (87)
T ss_pred EEeCCCCEEEEEEe-CCCCcccCCCcee
Confidence 68999999999888 9999999987643
No 216
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=60.88 E-value=17 Score=37.74 Aligned_cols=107 Identities=12% Similarity=0.183 Sum_probs=69.5
Q ss_pred CceeecCCCCHH-HHHHHHHhcCCCEEEEECCCC--cEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157 297 PLAMLRPSASLS-AALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 373 (429)
Q Consensus 297 ~~~~v~~~~sl~-~a~~~m~~~~~~~lpVvd~~g--~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~ 373 (429)
.+.....+..+. +......+++++++||.+.+. .+.|.+....+ .+..... .+...++...+
T Consensus 215 ~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~~~~----~~~~~~v~~~~---------- 279 (498)
T KOG2118|consen 215 DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQVEV----PLEPLPVSESA---------- 279 (498)
T ss_pred hheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhcccc----ccccccchhhh----------
Confidence 345556666665 555666799999999997532 23332222222 2221111 12234555544
Q ss_pred cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHH
Q 014157 374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDI 423 (429)
Q Consensus 374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Di 423 (429)
..+...++.++++.+.++.+.+.+.|.+.|.. ...-+++++..|+
T Consensus 280 ---~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 280 ---LLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred ---ccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 45778889999999999999999988888877 4556889988886
No 217
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=60.20 E-value=3.6 Score=31.16 Aligned_cols=17 Identities=24% Similarity=0.172 Sum_probs=13.5
Q ss_pred ccCCceeEEEEEECCee
Q 014157 3 FYIVHYVQYKFCVDGEW 19 (429)
Q Consensus 3 ~l~~g~~~ykf~vdg~w 19 (429)
++++|.+.|+|.|||.+
T Consensus 58 ~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 58 DLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp CGTTTT-EEEEEEEETT
T ss_pred CcCCCCEEEEEEEEeCC
Confidence 37788899999999876
No 218
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=55.39 E-value=38 Score=36.38 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc-ccccccccccc-----cHHHHHhcCCCCCCcccccCCCce
Q 014157 308 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD-KAYAHINLSEM-----TIHQALQLGQDSYSPYELRSQRCQ 381 (429)
Q Consensus 308 ~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~-~~~~~l~l~~~-----~v~~~l~~~~~~~~~~~~~~~~~~ 381 (429)
....+.+...+ ..++++|.+|.++.+....++...+.. +......|.+. -++-++. ...++
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~------------~~~pv 128 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAI------------SGQPV 128 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHh------------cCCce
Confidence 34444555555 688889999999999998888765433 21111222221 1222221 33455
Q ss_pred EEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeH
Q 014157 382 MCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 420 (429)
Q Consensus 382 ~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~ 420 (429)
.|...+-..+.+ ........||.|+ +|+++|+|+.
T Consensus 129 ~v~g~EH~~~~~---~~~~c~aaPI~d~-~G~liGvl~l 163 (638)
T PRK11388 129 KTMGDQHFKQAL---HNWAFCATPVFDS-KGRLTGTIAL 163 (638)
T ss_pred EEecHHHHHHhc---cCceEEeeEEEcC-CCCEEEEEEE
Confidence 566555544443 3345567999995 8999999974
No 219
>PF01378 IgG_binding_B: B domain; InterPro: IPR000724 This domain is found as a tandem repeat in Streptococcal cell surface proteins, such as the IgG binding proteins G and MIG. These proteins are type I membrane proteins that bind to the constant Fc region of IgG with high affinity. The N terminus of MIG mediates binding to plasma proteinase inhibitor alpha 2-macroglobulin after complex formation with proteases.; GO: 0005618 cell wall; PDB: 1IGC_A 2IGH_A 2NMQ_A 1IGD_A 1PGX_A 2IGD_A 1QKZ_A 1GB4_A 1FCC_D 1FCL_A ....
Probab=50.95 E-value=8 Score=26.35 Aligned_cols=13 Identities=46% Similarity=0.869 Sum_probs=10.6
Q ss_pred ECCeeeecCCCCc
Q 014157 15 VDGEWRHDEHQPF 27 (429)
Q Consensus 15 vdg~w~~~~~~~~ 27 (429)
|||+|-+|+...+
T Consensus 38 v~gew~yd~at~t 50 (55)
T PF01378_consen 38 VDGEWSYDDATKT 50 (55)
T ss_dssp TTSEEEEETTTTE
T ss_pred CCCccccccchhh
Confidence 7999999987643
No 220
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=47.27 E-value=2.8e+02 Score=27.36 Aligned_cols=144 Identities=12% Similarity=0.172 Sum_probs=87.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157 207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 286 (429)
Q Consensus 207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 286 (429)
..+.+.+.+++.+....+.+++ ++....++++....... .+.+..|+|
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~Y 93 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGEY 93 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCcee
Confidence 7889999999999999998764 33345677777655332 223555554
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc-
Q 014157 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL- 365 (429)
Q Consensus 287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~- 365 (429)
.+.+.+|..+++++|.+-+.....++ +..=.+.+++...+.....-..........+++..
T Consensus 94 -------------~l~~~ms~~~il~~L~~Gk~~~~~~~-----ipEG~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 94 -------------RLRPGMSAADILKLLESGKSAQFKVT-----IPEGYTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -------------ecCCCCCHHHHHHHHhcCccccceEe-----cCCCccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 47788999999999986554444333 22224666777655433322222223334444422
Q ss_pred CC-CCCCcccccCCCceEEcCCCCHHHHHHHHHcCC
Q 014157 366 GQ-DSYSPYELRSQRCQMCLPSDTLHKVMERLANPG 400 (429)
Q Consensus 366 ~~-~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 400 (429)
.. ......++.-+.-..+.++++-.++++.|.+.-
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~ 191 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAM 191 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHH
Confidence 11 112234444456677889999999999987653
No 221
>PF06573 Churchill: Churchill protein; InterPro: IPR009508 This family consists of several eukaryotic Churchill proteins. This protein contains a novel zinc binding region that mediates FGF signalling during neural development. The slow induction by FGF of a transcription factor (Churchill) in the neural plate in turn induces expression of Sip1 (Smad interacting protein-1), which inhibits mesodermal genes and sensitizes cells to later neural inducing factors [].; GO: 0008270 zinc ion binding, 0007275 multicellular organismal development, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2JOX_A.
Probab=44.82 E-value=15 Score=29.21 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.9
Q ss_pred ceeEEEEEECCeee
Q 014157 7 HYVQYKFCVDGEWR 20 (429)
Q Consensus 7 g~~~ykf~vdg~w~ 20 (429)
-+|+|.|-|+|+++
T Consensus 69 A~HEYtF~V~~~yQ 82 (112)
T PF06573_consen 69 ARHEYTFSVVDDYQ 82 (112)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeeEEEEEeccch
Confidence 37999999998875
No 222
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=44.03 E-value=30 Score=26.79 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=16.0
Q ss_pred cccCCc-eeEEEEEE---CC--eeeecCCC
Q 014157 2 FFYIVH-YVQYKFCV---DG--EWRHDEHQ 25 (429)
Q Consensus 2 ~~l~~g-~~~ykf~v---dg--~w~~~~~~ 25 (429)
++||+| ..+|||++ || .|...++.
T Consensus 47 ~~l~~~~~ieyKy~~~~~~~~v~WE~g~Nr 76 (92)
T cd05818 47 LELDGGELVEYKFVIVKRDGSVIWEGGNNR 76 (92)
T ss_pred EEeCCCCcEEEEEEEEcCCCCEEEEeCCCE
Confidence 456655 68999999 33 57665553
No 223
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=43.03 E-value=14 Score=29.60 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCceeEEEEEECCeeeecCC
Q 014157 5 IVHYVQYKFCVDGEWRHDEH 24 (429)
Q Consensus 5 ~~g~~~ykf~vdg~w~~~~~ 24 (429)
|-|=|+|.|. ||.|++.-+
T Consensus 65 p~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCCccceec-CCEEEECCC
Confidence 5588999985 999998744
No 224
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=42.90 E-value=22 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=19.6
Q ss_pred cCCceeEEEEEECCeeeecCCC-----CcccCCCCCc
Q 014157 4 YIVHYVQYKFCVDGEWRHDEHQ-----PFISSEYGIV 35 (429)
Q Consensus 4 l~~g~~~ykf~vdg~w~~~~~~-----~~~~~~~g~~ 35 (429)
+.+|. .|+|.|||.|.-++.. ....|+|+.-
T Consensus 58 ~~~g~-~Y~y~v~g~~~p~~g~~~~~~~~~~DPYA~a 93 (119)
T cd02852 58 LKPGQ-LYGYRVDGPFEPEQGHRFDPSKVLLDPYAKA 93 (119)
T ss_pred CCCCC-EEEEEECCCCCCCcccccCCCcEEECCCcCe
Confidence 45675 7999999987544432 2255666543
No 225
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=42.59 E-value=15 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=15.5
Q ss_pred CCceeEEEEEECCeeeecCC
Q 014157 5 IVHYVQYKFCVDGEWRHDEH 24 (429)
Q Consensus 5 ~~g~~~ykf~vdg~w~~~~~ 24 (429)
|.|-|+|.|. ||.|++.-+
T Consensus 64 ~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 64 KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred CCCCccceec-CCeEEECCC
Confidence 5688999995 999998744
No 226
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=40.91 E-value=56 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHhccc
Q 014157 319 VSSIPIVDDNDSLLDIYCRSDITALAKDKA 348 (429)
Q Consensus 319 ~~~lpVvd~~g~lvGivt~~Di~~~~~~~~ 348 (429)
...+-|+|++|..+|+++.++.+..+....
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 467888999999999999999998877643
No 227
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=38.92 E-value=21 Score=28.23 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.7
Q ss_pred CceeEEEEEECCeeeecCC
Q 014157 6 VHYVQYKFCVDGEWRHDEH 24 (429)
Q Consensus 6 ~g~~~ykf~vdg~w~~~~~ 24 (429)
.|-|+|.| ++|.|++.-+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 58899999 5999998654
No 228
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=37.78 E-value=1.3e+02 Score=32.40 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh-hcccCCCCCcccCCccccccCcccccccCCCCCC
Q 014157 218 KDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR-YFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRR 296 (429)
Q Consensus 218 ~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~-~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~ 296 (429)
.+....+...+ ..+.+.| .+| .++.+....++++.+.. .+... ..+....++.-.+|+.. ...
T Consensus 62 ~~l~~~l~~~~-~~~~l~D---~~G---~vL~~~g~~~~~~~~~~~~~~~G---~~w~E~~~GTnaig~al------~~~ 125 (638)
T PRK11388 62 EDAWEYMADRE-CALLILD---ETG---CILSRNGDPQTLQQLSALGFNDG---TYCAEGIIGTNALSLAA------ISG 125 (638)
T ss_pred HHHHHHhcCCC-cEEEEEc---CCc---eEEEEeCCHHHHHHHHHcCCccC---CccchhccCcCHHHHHH------hcC
Confidence 33334444444 6677776 566 89999999988876654 22110 01112222222222221 123
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEe
Q 014157 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 336 (429)
Q Consensus 297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt 336 (429)
.++.+.... .-.+.+......+.||.|.+|+++|+++
T Consensus 126 ~pv~v~g~E---H~~~~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 126 QPVKTMGDQ---HFKQALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred CceEEecHH---HHHHhccCceEEeeEEEcCCCCEEEEEE
Confidence 455565553 3334444556688999999999999996
No 229
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.93 E-value=27 Score=37.29 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=22.5
Q ss_pred CCceeEEEEEECCeeee---cCCCCcccCC
Q 014157 5 IVHYVQYKFCVDGEWRH---DEHQPFISSE 31 (429)
Q Consensus 5 ~~g~~~ykf~vdg~w~~---~~~~~~~~~~ 31 (429)
..|.||+||.++|+|+- |...|+..+.
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~~ 144 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNGG 144 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcCC
Confidence 46999999999999974 6677887765
No 230
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=34.76 E-value=34 Score=32.80 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=16.9
Q ss_pred CceeEEEEEECCeeee---cCCCCc
Q 014157 6 VHYVQYKFCVDGEWRH---DEHQPF 27 (429)
Q Consensus 6 ~g~~~ykf~vdg~w~~---~~~~~~ 27 (429)
.|.|..||+.+|+|+. |...|+
T Consensus 87 ~G~y~v~l~~~G~w~~V~VDd~lP~ 111 (298)
T PF00648_consen 87 NGIYTVRLFKNGEWREVTVDDRLPC 111 (298)
T ss_dssp SSEEEEEEEETTEEEEEEEES-EEE
T ss_pred CceeeEeeccCCeeeeeccchhhhc
Confidence 4999999999999974 444454
No 231
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=33.90 E-value=40 Score=26.61 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.3
Q ss_pred cCCceeEEEEEECCee
Q 014157 4 YIVHYVQYKFCVDGEW 19 (429)
Q Consensus 4 l~~g~~~ykf~vdg~w 19 (429)
+.+|. .|+|.|||.|
T Consensus 54 ~~~g~-~Y~y~i~g~~ 68 (103)
T cd02856 54 IKAGQ-RYGFRVHGPY 68 (103)
T ss_pred CCCCC-EEEEEECCcc
Confidence 45665 7999999953
No 232
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=33.76 E-value=41 Score=27.11 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=16.1
Q ss_pred CceeEEEEEECCeeeecCCC
Q 014157 6 VHYVQYKFCVDGEWRHDEHQ 25 (429)
Q Consensus 6 ~g~~~ykf~vdg~w~~~~~~ 25 (429)
.|-|+|.|. +|+|++.-+.
T Consensus 69 sG~~hf~~~-~~~W~~~r~g 87 (109)
T PF01491_consen 69 SGPFHFDYD-DGKWIDTRDG 87 (109)
T ss_dssp TEEEEEEEE-SSSEEETTTT
T ss_pred CCceEEEEc-CCEEEECCCC
Confidence 688999998 9999987654
No 233
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=33.48 E-value=45 Score=25.71 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=10.9
Q ss_pred cccCCc-eeEEEEEE
Q 014157 2 FFYIVH-YVQYKFCV 15 (429)
Q Consensus 2 ~~l~~g-~~~ykf~v 15 (429)
++||+| .++|||++
T Consensus 49 v~l~~~~~~eYKy~~ 63 (95)
T cd05808 49 VDLPAGTAIEYKYIK 63 (95)
T ss_pred EEeCCCCeEEEEEEE
Confidence 467765 69999996
No 234
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=33.34 E-value=27 Score=27.21 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.4
Q ss_pred cccCCc-eeEEEEEE
Q 014157 2 FFYIVH-YVQYKFCV 15 (429)
Q Consensus 2 ~~l~~g-~~~ykf~v 15 (429)
++||.| .++|||++
T Consensus 54 v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 54 VDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EECcCCCEEEEEEEE
Confidence 467777 59999999
No 235
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=33.32 E-value=36 Score=33.10 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=20.0
Q ss_pred cCCceeEEEEEECCeeee---cCCCCcc
Q 014157 4 YIVHYVQYKFCVDGEWRH---DEHQPFI 28 (429)
Q Consensus 4 l~~g~~~ykf~vdg~w~~---~~~~~~~ 28 (429)
-+.|.|..||+.+|+||. |+..|+.
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 367999999999999985 5555653
No 236
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=32.66 E-value=85 Score=32.70 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=81.6
Q ss_pred hhhccccccCCCCccEEEEcCCCCHH-HHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhh
Q 014157 101 LSTHTAYELLPESGKVVALDIDLPVK-QAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE 179 (429)
Q Consensus 101 l~~~~~~d~~p~s~~vv~l~~~~~v~-~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~ 179 (429)
|...++-|+|-+...+..++.+..+. +......+.|.+.+||++.+....+|.+=....+.++... .+
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----~~------- 269 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----VP------- 269 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----cc-------
Confidence 34455667777778888999888877 5555567999999999997755444432112222222100 01
Q ss_pred hhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHH
Q 014157 180 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC 259 (429)
Q Consensus 180 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~ 259 (429)
.....|.. .+...+..++.+.++.+..+.+.+.+.|.+.|.. .. .-+++++..++ .-
T Consensus 270 -~~~~~v~~--------------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~----~~---~~~~~~~l~~~-~~ 326 (498)
T KOG2118|consen 270 -LEPLPVSE--------------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN----GH---VDIFVLTLEDL-EE 326 (498)
T ss_pred -cccccchh--------------hhccccccCCCcccHHHHHHHHhhhhceeEEEec----CC---cceeeEeccch-hh
Confidence 11222221 2455677788999999999999988877777773 22 46888888887 44
Q ss_pred HH
Q 014157 260 VC 261 (429)
Q Consensus 260 l~ 261 (429)
+.
T Consensus 327 ~~ 328 (498)
T KOG2118|consen 327 VV 328 (498)
T ss_pred hc
Confidence 43
No 237
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=31.16 E-value=66 Score=33.37 Aligned_cols=37 Identities=32% Similarity=0.576 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157 387 DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425 (429)
Q Consensus 387 ~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~ 425 (429)
..+..+.+...+.+-.-|+|++ ++++.|+|-+.|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 4577888888899989999998 799999999999975
No 238
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=30.90 E-value=46 Score=26.14 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=15.3
Q ss_pred cccCCc-eeEEEEEE---CC---eeeecCC
Q 014157 2 FFYIVH-YVQYKFCV---DG---EWRHDEH 24 (429)
Q Consensus 2 ~~l~~g-~~~ykf~v---dg---~w~~~~~ 24 (429)
++||+| .++|||++ || .|...++
T Consensus 54 ~~lp~~~~veyKyv~~~~~~~~~~WE~g~n 83 (99)
T cd05809 54 VHLPAGRNIEFKAIKKSKDGTNKSWQGGQQ 83 (99)
T ss_pred EEecCCCcEEEEEEEEcCCCCeeEEecCCC
Confidence 467766 48999999 33 3655554
No 239
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=30.52 E-value=48 Score=26.05 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=10.5
Q ss_pred cccCCc-eeEEEEEE
Q 014157 2 FFYIVH-YVQYKFCV 15 (429)
Q Consensus 2 ~~l~~g-~~~ykf~v 15 (429)
+++|+| ..+|||+|
T Consensus 51 v~~~~~~~veYky~v 65 (101)
T cd05815 51 ISVPPGFSSEYNYYV 65 (101)
T ss_pred EEeCCCCcEEEEEEE
Confidence 356665 49999999
No 240
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=30.24 E-value=1e+02 Score=23.15 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=18.5
Q ss_pred CCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157 401 VRRLVIVEAGSKRVEGIVSLSDIFKF 426 (429)
Q Consensus 401 v~~l~VVd~~~g~l~GiIs~~Dil~~ 426 (429)
.+.+-||| ++|..+|+++.++-++.
T Consensus 12 ~~~VrlI~-~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLID-EDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE--TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEEC-CCCcEeceEEHHHHHHH
Confidence 35678899 59999999999998764
No 241
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=28.48 E-value=49 Score=32.06 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=19.0
Q ss_pred cCCceeEEEEEECCeeee---cCCCCc
Q 014157 4 YIVHYVQYKFCVDGEWRH---DEHQPF 27 (429)
Q Consensus 4 l~~g~~~ykf~vdg~w~~---~~~~~~ 27 (429)
-+.|.|..||+.+|+|+. |...|+
T Consensus 106 ~~~G~y~v~l~~~G~w~~V~VDD~lP~ 132 (315)
T cd00044 106 NYAGIYHFRFWKNGEWVEVVIDDRLPT 132 (315)
T ss_pred CcCcEEEEEEEECCEEEEEEecCCCee
Confidence 467999999999999996 444454
No 242
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=28.36 E-value=38 Score=28.72 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=4.8
Q ss_pred CceeEEEEEE
Q 014157 6 VHYVQYKFCV 15 (429)
Q Consensus 6 ~g~~~ykf~v 15 (429)
+|.|+|.|.|
T Consensus 95 ~g~HrY~f~v 104 (141)
T TIGR00481 95 KGDHRYLFTV 104 (141)
T ss_pred CCCEEEEEEE
Confidence 3445555543
No 243
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=28.26 E-value=54 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.4
Q ss_pred cccCCce-eEEEEEE
Q 014157 2 FFYIVHY-VQYKFCV 15 (429)
Q Consensus 2 ~~l~~g~-~~ykf~v 15 (429)
++||+|. .+|||++
T Consensus 48 v~lp~~~~ieYky~~ 62 (95)
T cd05813 48 VSLPVDTHVEWKFVL 62 (95)
T ss_pred EEecCCCcEEEEEEE
Confidence 4677776 9999998
No 244
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=27.72 E-value=22 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=13.3
Q ss_pred eeEEEEEECCeeeecCCC
Q 014157 8 YVQYKFCVDGEWRHDEHQ 25 (429)
Q Consensus 8 ~~~ykf~vdg~w~~~~~~ 25 (429)
.|+=.|++||.|.+--..
T Consensus 7 ~yHP~~~~~G~W~CC~q~ 24 (36)
T smart00107 7 KYHPSFWVDGKWLCCQQS 24 (36)
T ss_pred ccCCCceeCCeEccCCCc
Confidence 355589999999986543
No 245
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=27.46 E-value=41 Score=26.82 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=15.5
Q ss_pred CCceeEEEEEECCeeeecCCC
Q 014157 5 IVHYVQYKFCVDGEWRHDEHQ 25 (429)
Q Consensus 5 ~~g~~~ykf~vdg~w~~~~~~ 25 (429)
|.|-|+|.|. ||.|++.-+.
T Consensus 62 psG~~hF~~~-~~~Wi~~r~g 81 (102)
T TIGR03421 62 KSGGFHFDYD-GGAWIDTRDG 81 (102)
T ss_pred CCCCccceec-CCEEEECCCC
Confidence 5688889885 9999986554
No 246
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=27.35 E-value=48 Score=26.83 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=30.3
Q ss_pred ccCCceeEEEEEEC--CeeeecCCC-CcccCCCCCcceEE-EecCCCCC
Q 014157 3 FYIVHYVQYKFCVD--GEWRHDEHQ-PFISSEYGIVNTVL-LATEPNFM 47 (429)
Q Consensus 3 ~l~~g~~~ykf~vd--g~w~~~~~~-~~~~~~~g~~~n~~-~~~~~~~~ 47 (429)
+||||.|--..+=| |+.+.|-+. -.=...+|.-||.- ...++.|+
T Consensus 49 ~lp~G~YAi~v~hD~N~NgklD~n~~GiP~E~~GfSnn~~~~~g~P~f~ 97 (112)
T PF09912_consen 49 DLPPGTYAIAVFHDENGNGKLDTNFIGIPKEGYGFSNNPKGKFGPPSFE 97 (112)
T ss_pred CCCCccEEEEEEEeCCCCCcCCcCCCCCcccCCeECCCCcCcCCCCChH
Confidence 79999999999987 666666655 23345677777763 34444444
No 247
>PF11447 DUF3201: Protein of unknown function (DUF3201); InterPro: IPR024505 This archaeal family of proteins has no known function.; PDB: 1YB3_A.
Probab=27.13 E-value=42 Score=27.98 Aligned_cols=11 Identities=55% Similarity=1.334 Sum_probs=8.2
Q ss_pred EEEEEECCeeee
Q 014157 10 QYKFCVDGEWRH 21 (429)
Q Consensus 10 ~ykf~vdg~w~~ 21 (429)
+| -++||+||.
T Consensus 35 ay-i~lDgeW~e 45 (150)
T PF11447_consen 35 AY-IYLDGEWRE 45 (150)
T ss_dssp -E-EEETTEEEE
T ss_pred ee-EEecCeeee
Confidence 45 679999985
No 248
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.10 E-value=42 Score=26.29 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=15.1
Q ss_pred CCceeEEEEEECCe-----eeecCCCCcc
Q 014157 5 IVHYVQYKFCVDGE-----WRHDEHQPFI 28 (429)
Q Consensus 5 ~~g~~~ykf~vdg~-----w~~~~~~~~~ 28 (429)
.+|.+ |+|.|||. ...||-...+
T Consensus 57 ~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 57 LEGYY-YLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred cCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence 45554 99999987 5556655443
No 249
>PF13954 PapC_N: PapC N-terminal domain; PDB: 2VQI_B 3FIP_A 3RFZ_E 3OHN_A 1ZDV_A 1ZE3_D 3BWU_D 1ZDX_A.
Probab=24.55 E-value=51 Score=27.95 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=25.4
Q ss_pred ccCCceeEEEEEECCeeeecCCCCcccCCCC
Q 014157 3 FYIVHYVQYKFCVDGEWRHDEHQPFISSEYG 33 (429)
Q Consensus 3 ~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g 33 (429)
.++||+|.-..+|.|+|.-..+-.+..++.+
T Consensus 26 ~~~pG~Y~vdv~vN~~~~~~~~i~f~~~~~~ 56 (146)
T PF13954_consen 26 AIPPGEYSVDVYVNGKFIGRYDIEFINNDDG 56 (146)
T ss_dssp SS-SEEEEEEEEETTEEEEEEEEEEEESSST
T ss_pred CCCCeEEEEEEEECCeeeeeEEEEEEeCCCc
Confidence 3799999999999999999777777777666
No 250
>PF14645 Chibby: Chibby family
Probab=22.99 E-value=63 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.4
Q ss_pred cCCceeEEEEEECCeee
Q 014157 4 YIVHYVQYKFCVDGEWR 20 (429)
Q Consensus 4 l~~g~~~ykf~vdg~w~ 20 (429)
|-=|..+|+| .||+|.
T Consensus 45 l~Lg~~~l~F-~dG~W~ 60 (116)
T PF14645_consen 45 LNLGDQTLVF-EDGQWT 60 (116)
T ss_pred EeECCeEEEE-ECCEEe
Confidence 4447889999 999999
No 251
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=22.48 E-value=90 Score=24.67 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=14.8
Q ss_pred cccCCc-eeEEEEEE---CC--eeeecCC
Q 014157 2 FFYIVH-YVQYKFCV---DG--EWRHDEH 24 (429)
Q Consensus 2 ~~l~~g-~~~ykf~v---dg--~w~~~~~ 24 (429)
++||.| ..+|||++ || .|...++
T Consensus 56 ~~lp~~~~veyK~v~~~~~g~v~WE~g~N 84 (103)
T cd05820 56 ASVPAGTYIEFKFLKAPADGTGTWEGGSN 84 (103)
T ss_pred EEcCCCCcEEEEEEEECCCCCEEEEeCCC
Confidence 456665 48999999 43 3655544
No 252
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=21.78 E-value=46 Score=26.60 Aligned_cols=14 Identities=14% Similarity=0.574 Sum_probs=11.9
Q ss_pred CceeEEEEEECCeee
Q 014157 6 VHYVQYKFCVDGEWR 20 (429)
Q Consensus 6 ~g~~~ykf~vdg~w~ 20 (429)
.|=|+|.|. ||.|+
T Consensus 66 sG~~hF~y~-~g~W~ 79 (103)
T PRK01379 66 SGPYHFFYE-QGKWK 79 (103)
T ss_pred CCCcceecC-CCeeE
Confidence 488999984 99999
No 253
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=21.46 E-value=2.4e+02 Score=24.73 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=26.7
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHhccc
Q 014157 318 QVSSIPIVDDNDSLLDIYCRSDITALAKDKA 348 (429)
Q Consensus 318 ~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~ 348 (429)
++..+-+++++|.-+|+++..+-+.++....
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~ 47 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAG 47 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcC
Confidence 5667889999999999999999999887643
No 254
>PF07280 DUF1443: Protein of unknown function (DUF1443); InterPro: IPR009903 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf110; it is a family of uncharacterised viral proteins.
Probab=20.69 E-value=21 Score=23.62 Aligned_cols=7 Identities=57% Similarity=1.160 Sum_probs=5.2
Q ss_pred eeEEEEE
Q 014157 8 YVQYKFC 14 (429)
Q Consensus 8 ~~~ykf~ 14 (429)
.||||||
T Consensus 29 ~YQykyI 35 (43)
T PF07280_consen 29 YYQYKYI 35 (43)
T ss_pred HHHhccc
Confidence 4788886
No 255
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=20.17 E-value=1e+02 Score=24.74 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=13.4
Q ss_pred CEEEEECCCCcEEEEEeH
Q 014157 320 SSIPIVDDNDSLLDIYCR 337 (429)
Q Consensus 320 ~~lpVvd~~g~lvGivt~ 337 (429)
-..||.|.+|+++|+|+.
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 368999889999999874
No 256
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=20.10 E-value=1.4e+02 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=10.8
Q ss_pred cccCCce-eEEEEEE
Q 014157 2 FFYIVHY-VQYKFCV 15 (429)
Q Consensus 2 ~~l~~g~-~~ykf~v 15 (429)
++||+|. .+|||++
T Consensus 59 v~lp~~~~veYKy~~ 73 (106)
T cd05811 59 IPLPAGTSFEYKFIR 73 (106)
T ss_pred EEeCCCCcEEEEEEE
Confidence 4577665 9999996
Done!