Query 014159
Match_columns 429
No_of_seqs 150 out of 1068
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12907 secY preprotein trans 100.0 2E-102 5E-107 801.9 43.5 410 8-419 5-429 (434)
2 COG0201 SecY Preprotein transl 100.0 3E-102 7E-107 795.4 40.0 405 9-420 11-431 (436)
3 PRK09204 secY preprotein trans 100.0 9E-101 2E-105 791.4 43.6 409 8-419 5-425 (426)
4 CHL00161 secY preprotein trans 100.0 2.7E-99 6E-104 779.2 43.0 409 10-420 4-416 (417)
5 TIGR00967 3a0501s007 preprotei 100.0 5.1E-95 1.1E-99 746.5 43.5 397 17-416 1-410 (410)
6 PRK12417 secY preprotein trans 100.0 5.4E-95 1.2E-99 742.5 40.9 389 9-419 5-401 (404)
7 TIGR02920 acc_sec_Y2 accessory 100.0 2.3E-89 5.1E-94 700.6 41.4 387 15-419 1-394 (395)
8 PRK08568 preprotein translocas 100.0 6.7E-89 1.4E-93 708.7 39.2 384 13-424 23-462 (462)
9 PTZ00219 Sec61 alpha subunit; 100.0 1.5E-81 3.3E-86 654.3 39.0 373 13-413 27-469 (474)
10 PF00344 SecY: SecY translocas 100.0 1.6E-76 3.4E-81 598.5 29.3 327 71-405 1-346 (346)
11 KOG1373 Transport protein Sec6 100.0 2.2E-56 4.7E-61 436.5 31.2 377 12-417 25-471 (476)
12 PF10559 Plug_translocon: Plug 90.3 0.1 2.2E-06 35.3 0.4 33 28-66 1-33 (35)
13 PF07330 DUF1467: Protein of u 51.6 29 0.00063 28.2 4.5 57 312-372 14-70 (85)
14 PF05697 Trigger_N: Bacterial 47.3 41 0.0009 29.5 5.3 31 334-365 37-67 (145)
15 PF10777 YlaC: Inner membrane 40.6 47 0.001 29.9 4.4 44 86-132 4-49 (155)
16 PF04923 Ninjurin: Ninjurin ; 39.2 74 0.0016 26.9 5.3 42 79-121 46-88 (104)
17 PHA01632 hypothetical protein 30.7 37 0.0008 25.4 1.8 17 342-358 24-40 (64)
18 COG5454 Predicted secreted pro 30.1 2.8E+02 0.0061 22.5 6.8 58 316-377 18-75 (89)
19 PF12263 DUF3611: Protein of u 27.6 3.3E+02 0.0072 25.3 8.0 43 305-353 63-106 (183)
20 PF08006 DUF1700: Protein of u 26.8 2.3E+02 0.0049 25.8 6.8 32 323-355 52-83 (181)
21 PF00690 Cation_ATPase_N: Cati 25.8 99 0.0021 23.4 3.6 25 321-345 20-44 (69)
22 COG1862 YajC Preprotein transl 25.3 69 0.0015 26.8 2.8 36 308-346 14-49 (97)
23 PRK01490 tig trigger factor; P 25.3 65 0.0014 33.7 3.3 28 329-357 33-60 (435)
24 PF10066 DUF2304: Uncharacteri 24.6 3.1E+02 0.0067 23.2 6.8 28 163-190 51-79 (115)
25 PF10905 DUF2695: Protein of u 22.8 1.2E+02 0.0027 22.4 3.4 19 319-337 27-45 (53)
26 PRK01100 putative accessory ge 22.7 2.9E+02 0.0062 26.1 6.8 34 392-425 173-208 (210)
27 PRK06531 yajC preprotein trans 20.2 82 0.0018 27.1 2.3 33 309-345 9-41 (113)
No 1
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=2.3e-102 Score=801.93 Aligned_cols=410 Identities=33% Similarity=0.598 Sum_probs=353.3
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHH
Q 014159 8 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV 86 (429)
Q Consensus 8 ~~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi 86 (429)
++++++ +|+|+|++||++++++||+|+|||+||+|.++.+. .+++++++++|+|+||+++|+|+|+|||+|||||||+
T Consensus 5 ~~~~~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~-~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII 83 (434)
T PRK12907 5 ISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV-QDQANVLGMLNVFGGGALQHFSIFAVGITPYITASII 83 (434)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh-hhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHH
Confidence 355564 79999999999999999999999999999987652 2234589999999999999999999999999999999
Q ss_pred HHHHhc-cchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-----cccchhHHHHHHHHHHHHHHH
Q 014159 87 FQLLAQ-INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV-----NDFSTDWVLTSVTLLTLGSAF 160 (429)
Q Consensus 87 ~QLl~~-~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~-----~~~~~~~~~~~vl~L~aGs~~ 160 (429)
|||++. .+|+++|++| |||+||||+|+||||+|+++|++||++++..+.... .+.++..+++++++|++||++
T Consensus 84 ~QLL~~~~~p~l~~l~k-ege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~ 162 (434)
T PRK12907 84 VQLLQMDVIPKFSEWAK-QGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAF 162 (434)
T ss_pred HHHHHhccCccHHHHhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHH
Confidence 999964 7999999997 899999999999999999999999999887664211 112333456677999999999
Q ss_pred HHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHh-hcCc-----hhHHHHHHHHHHHHHHHHHhhhccEEeee
Q 014159 161 TTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGN-----YIGLATIIISFILLVLGIVYVQEAERKIP 234 (429)
Q Consensus 161 l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~~~~v~~~~~~~rIP 234 (429)
++||||+|||||+|||+|++|++||++++|+.+.+.+.... ..+. ....++.+++++++++++|++|++|||||
T Consensus 163 l~WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~v~~~~rrIP 242 (434)
T PRK12907 163 LLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIP 242 (434)
T ss_pred HHHHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHHHHHHHHHhheeeeeEEEE
Confidence 99999999999999999999999999999988876432111 1121 11112233444567788999999999999
Q ss_pred eeecccccccCCCCC-CccccceeecccCChhHHHHHHhHhhHHHHHHhhcc-hHHHHHHHhcCCCCcchHHHHHHHHHH
Q 014159 235 INYASRYTSRSGGLQ-RSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI-AALKKAAVALNPGGSFYLPTNILLIAF 312 (429)
Q Consensus 235 i~~~~~~~~~~~~~~-~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~-~~~~~~~~~~~~~~~~y~~~y~~li~~ 312 (429)
+||+||..+++.+.+ +++|+|+|+|+|||||+||||+++++|+++++++++ ++.++...++++++++|.++|++++++
T Consensus 243 i~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~ 322 (434)
T PRK12907 243 IQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLIVA 322 (434)
T ss_pred EEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 999999988776665 678999999999999999999999999999998754 333444555788888899999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchh
Q 014159 313 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTS 392 (429)
Q Consensus 313 fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGts 392 (429)
|+|||+.+++||||+||||||+|+||||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+....+||||
T Consensus 323 Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~~~~~~~~gGTs 402 (434)
T PRK12907 323 FTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTS 402 (434)
T ss_pred HHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998777765334489999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCe
Q 014159 393 VLILVGCATDTARKVQAEIISQKYKNI 419 (429)
Q Consensus 393 lLI~V~v~~~~~~qi~~~~~~~~Y~~~ 419 (429)
+||+|||++|++||+|+++.+++|+++
T Consensus 403 lLI~VgV~ldt~~qi~s~l~~~~Y~~~ 429 (434)
T PRK12907 403 LLIIVGVALETMKTLESQLVKRHYKGF 429 (434)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998
No 2
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-102 Score=795.38 Aligned_cols=405 Identities=37% Similarity=0.655 Sum_probs=359.9
Q ss_pred hhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHH
Q 014159 9 GDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVF 87 (429)
Q Consensus 9 ~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~ 87 (429)
.+.+| +++|||++||++++++||+|++||+||+|.++..+..+++....++|+++||+++|+|+|+|||+|||||||||
T Consensus 11 ~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~PyITASII~ 90 (436)
T COG0201 11 SPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPYITASIIM 90 (436)
T ss_pred cchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHHHHHHHHH
Confidence 44544 68999999999999999999999999999998887666556666899999999999999999999999999999
Q ss_pred HHHhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc--c---cccchhHHHHHHHHHHHHHHHHH
Q 014159 88 QLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY--V---NDFSTDWVLTSVTLLTLGSAFTT 162 (429)
Q Consensus 88 QLl~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~--~---~~~~~~~~~~~vl~L~aGs~~l~ 162 (429)
|||+...|.++|++| |||+||||+|++|||+|+++|++||.+++..+... . .+.+..++++++++|++||+++|
T Consensus 91 QLL~~~~p~l~~l~k-~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~Gt~~lm 169 (436)
T COG0201 91 QLLTVGSPILKKLDK-EGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLM 169 (436)
T ss_pred HHHHHHHHHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHHHHHHH
Confidence 999876899999997 88999999999999999999999999999887421 1 12235677888999999999999
Q ss_pred HHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHhhc---CchhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecc
Q 014159 163 YIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD---GNYIGLATIIISFILLVLGIVYVQEAERKIPINYAS 239 (429)
Q Consensus 163 wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~ 239 (429)
||||+|||||+|||+|++|++||++++|+.+.+..+..... .+....++.++.++++++++||+|++|||||+||+|
T Consensus 170 wLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ii~~vvyve~~~r~IPI~y~~ 249 (436)
T COG0201 170 WLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAK 249 (436)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhhheEEEeehhhhh
Confidence 99999999999999999999999999999987755433211 122223345667788889999999999999999998
Q ss_pred cccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc-------hHHHHHHHhcCCCCcchHHHHHHHHHH
Q 014159 240 RYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI-------AALKKAAVALNPGGSFYLPTNILLIAF 312 (429)
Q Consensus 240 ~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~-------~~~~~~~~~~~~~~~~y~~~y~~li~~ 312 (429)
|. .+.++++|+|+|+|||||||+|||||++++|.++++++++ .|.......++++.++|..+|++++++
T Consensus 250 ~~----~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y~~lii~ 325 (436)
T COG0201 250 RQ----SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALYVVLIIF 325 (436)
T ss_pred hh----hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCCcHHHHHHHHHHHHH
Confidence 65 3447899999999999999999999999999999999862 245556677889999999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchh
Q 014159 313 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTS 392 (429)
Q Consensus 313 fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGts 392 (429)
|||||++++.||||+||||||+|.+|||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+. .+||||
T Consensus 326 Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~l~~~~~~~~~--~~gGTs 403 (436)
T COG0201 326 FSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPF--YFGGTS 403 (436)
T ss_pred HHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cccCee
Confidence 999999999999999999999999999999999999999999999999999999999999999998887762 389999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCee
Q 014159 393 VLILVGCATDTARKVQAEIISQKYKNIE 420 (429)
Q Consensus 393 lLI~V~v~~~~~~qi~~~~~~~~Y~~~~ 420 (429)
+||+|++++|++||+++|+.+|+|++++
T Consensus 404 lLI~V~V~l~~~~qi~~~l~~~~Y~~~~ 431 (436)
T COG0201 404 LLIVVGVALDTYEQIEAELLMEKYPGLR 431 (436)
T ss_pred eeeehHHHHHHHHHHHHHHHHhhchhHH
Confidence 9999999999999999999999999995
No 3
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=9.5e-101 Score=791.44 Aligned_cols=409 Identities=39% Similarity=0.698 Sum_probs=362.1
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhccc--chhHHHHHhhcCCCCccchhhhcCchHHHHHH
Q 014159 8 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 84 (429)
Q Consensus 8 ~~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~--~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAs 84 (429)
++++|| +++|+|++||++++++||+|+|||+||+|.++.++..+. +++++++++++||+++|+|+|+|||+||||||
T Consensus 5 ~~~~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAs 84 (426)
T PRK09204 5 LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYITAS 84 (426)
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHHHH
Confidence 356665 799999999999999999999999999999987664332 37899999999999999999999999999999
Q ss_pred HHHHHHhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-------cccchhHHHHHHHHHHHH
Q 014159 85 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV-------NDFSTDWVLTSVTLLTLG 157 (429)
Q Consensus 85 Ii~QLl~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~-------~~~~~~~~~~~vl~L~aG 157 (429)
|+||+++.++|+++|++| |||+||||+|++||++|+++|++||++++..+..+. .+++..++++++++|++|
T Consensus 85 Ii~QLL~~~ip~l~~l~k-ege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~G 163 (426)
T PRK09204 85 IIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAG 163 (426)
T ss_pred HHHHHHHHHhhhHHHHhh-ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHH
Confidence 999999988999999997 899999999999999999999999999886553221 112344567888999999
Q ss_pred HHHHHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHHHHhhhccEEeeeee
Q 014159 158 SAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPIN 236 (429)
Q Consensus 158 s~~l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~ 236 (429)
|++++||||+|||||+|||+|++|++||++++|+++.+.++....+ .+...++..+++++++++++||+|++|||||+|
T Consensus 164 s~i~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~rIPi~ 243 (426)
T PRK09204 164 TMFLMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243 (426)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHheeeeeEEEEEEE
Confidence 9999999999999999999999999999999999987766432211 222333444566778889999999999999999
Q ss_pred ecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcch-HHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 014159 237 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALKKAAVALNPGGSFYLPTNILLIAFFNY 315 (429)
Q Consensus 237 ~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~-~~~~~~~~~~~~~~~y~~~y~~li~~fs~ 315 (429)
|+||..||+.+.++++|+|+|+||+|+||+|||++++++|++++++.+++ |.++..+++++.+++|.++|.+++++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~Fs~ 323 (426)
T PRK09204 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYLSPGSPLYILLYALLIIFFTF 323 (426)
T ss_pred ehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99987787777788999999999999999999999999999999985444 66666777889899999999999999999
Q ss_pred HHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHH
Q 014159 316 YYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLI 395 (429)
Q Consensus 316 ~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI 395 (429)
||+++++||||+||||||||++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+ . .+||||+||
T Consensus 324 fy~~i~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~~~~~~~~~-~-~~ggTslLI 401 (426)
T PRK09204 324 FYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNALGVP-F-YFGGTSLLI 401 (426)
T ss_pred HHHHHhcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcc-c-ccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998776663 2 379999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCe
Q 014159 396 LVGCATDTARKVQAEIISQKYKNI 419 (429)
Q Consensus 396 ~V~v~~~~~~qi~~~~~~~~Y~~~ 419 (429)
+||+++|++||+|+++.++||+++
T Consensus 402 ~Vgv~l~~~~qi~~~~~~~~Y~~~ 425 (426)
T PRK09204 402 VVGVALDTMKQIESQLMSRQYEGF 425 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999986
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=2.7e-99 Score=779.21 Aligned_cols=409 Identities=41% Similarity=0.713 Sum_probs=355.4
Q ss_pred hhhcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHH
Q 014159 10 DFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQL 89 (429)
Q Consensus 10 ~~~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QL 89 (429)
.+.++++|+|++||++++++||+|+|||+||+|.+...+..+++++++++++++||+++|+|+|+|||+|||||||+||+
T Consensus 4 ~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~QL 83 (417)
T CHL00161 4 SKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFALGILPYINASIIIQL 83 (417)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhccccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998876544446799999999999999999999999999999999999
Q ss_pred HhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 014159 90 LAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERIS 169 (429)
Q Consensus 90 l~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~it 169 (429)
++.++|+++|++|||||+||||+|+|||++|+++|++||++++.++.....+++..+.++++++|++|+++++||||+||
T Consensus 84 l~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~it 163 (417)
T CHL00161 84 LTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWLKPYLFNWNLLLALEIVLALTSGSMIVLWLSELIT 163 (417)
T ss_pred HHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888999999986799999999999999999999999999987764333333444677888999999999999999999
Q ss_pred cccCCCchhHHHHHHHhhhchHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccccCCCC
Q 014159 170 DLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGL 248 (429)
Q Consensus 170 ~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~ 248 (429)
|||+|||+|++|++||++++|+.+.+.++.. +++ .....+..++++++++++++++|++|||||+||+||. +++.+.
T Consensus 164 ~~GiGnGiSliI~~~I~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~~~~-~~~~~~ 241 (417)
T CHL00161 164 EKGLGNGSSLLIFFNIVSNLPKLLQSLLFSL-SANITILSILLLLFLFFITLIGIIFLQEAIRKIPLISAKQL-GKSSRL 241 (417)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHHHHhhcceEEEEEEEhhhh-cccccc
Confidence 9999999999999999999999876654321 111 1112222344667788899999999999999999764 466667
Q ss_pred CCccccceeecccCChhHHHHHHhHhhHHHHHHhhcch-HHH--HHHHhcCCCCcchHHHHHHHHHHHHHHHHHhccChH
Q 014159 249 QRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALK--KAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPD 325 (429)
Q Consensus 249 ~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~-~~~--~~~~~~~~~~~~y~~~y~~li~~fs~~~~~i~~~p~ 325 (429)
++++|+|+|+||+|+||+|||++++++|+++++++++. +.+ ....+++++.++|.++|+++|++|+|||+++++|||
T Consensus 242 ~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~~lii~Fs~f~~~i~~~p~ 321 (417)
T CHL00161 242 ASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILFFSYFYSTIVLNPK 321 (417)
T ss_pred CccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 78999999999999999999999999999999987543 222 122345667888999999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHHHH
Q 014159 326 DVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTAR 405 (429)
Q Consensus 326 ~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~ 405 (429)
|+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+.+.++||||+||+||+++|++|
T Consensus 322 ~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~~~~~~~~~ggtslLI~Vgv~~~~~~ 401 (417)
T CHL00161 322 DISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVLNLSVFKGLGTTSLLILVGVAIDTSR 401 (417)
T ss_pred HHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccccccchhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987666543434689999999999999999
Q ss_pred HHHHHHHHccCCCee
Q 014159 406 KVQAEIISQKYKNIE 420 (429)
Q Consensus 406 qi~~~~~~~~Y~~~~ 420 (429)
|+|+++.+++|++++
T Consensus 402 qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 402 QIQTYLISNNYENMY 416 (417)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999999874
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=5.1e-95 Score=746.50 Aligned_cols=397 Identities=37% Similarity=0.636 Sum_probs=344.7
Q ss_pred hhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHhc-cch
Q 014159 17 PGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ-INP 95 (429)
Q Consensus 17 ~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~~-~~p 95 (429)
|+|++||++++++||+|++||+||+|.++..+..+++++++++++++||+++|+|+|+|||+|||||||+||+++. ..|
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~~ 80 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVPP 80 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccCh
Confidence 6899999999999999999999999999877655557889999999999999999999999999999999999975 567
Q ss_pred hhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 014159 96 KLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV-LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLG 174 (429)
Q Consensus 96 ~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~-~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~it~~GiG 174 (429)
.+++++| |||+||||+|++||++|+++|++||.+++ ..++....+++..++++++++|++||++++||||+|||||+|
T Consensus 81 ~l~~~~~-~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~~GiG 159 (410)
T TIGR00967 81 LLQLQKK-EGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIG 159 (410)
T ss_pred HHHHHhh-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 7777765 89999999999999999999999999988 444332344455567788899999999999999999999999
Q ss_pred CchhHHHHHHHhhhchHHHHHHHHHHh-hcCch------hHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccccCCC
Q 014159 175 NGTSLLIFTSIISYLPASFGRTVAEAF-QDGNY------IGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGG 247 (429)
Q Consensus 175 nG~SliI~~~I~~~lp~~i~~~~~~~~-~~~~~------~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~ 247 (429)
||+|++|++||++++|+++.+.++... +...+ ...+..+++++++++++|++|++|||||+||+||..+++
T Consensus 160 nG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~~~~-- 237 (410)
T TIGR00967 160 NGISLLIFAGIIATIPSGLLQPTEVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRR-- 237 (410)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHHheeeeeEEEEEEEEhhhhcCCC--
Confidence 999999999999999998876553210 11111 112344566778888999999999999999998665544
Q ss_pred CCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcch----HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhccC
Q 014159 248 LQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA----ALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLD 323 (429)
Q Consensus 248 ~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~----~~~~~~~~~~~~~~~y~~~y~~li~~fs~~~~~i~~~ 323 (429)
.++++|+|+|+||+|+||+|||++++++|+++++++++. |.......+++++|+|.++|.+++++|+|||+++++|
T Consensus 238 ~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~y~~lii~Fs~f~~~~~~~ 317 (410)
T TIGR00967 238 GSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPIGAILYLILIIFFSFFYVELQLN 317 (410)
T ss_pred CCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHccC
Confidence 457899999999999999999999999999999986432 3333334466778899999999999999999999999
Q ss_pred hHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHH
Q 014159 324 PDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDT 403 (429)
Q Consensus 324 p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~ 403 (429)
|||+||||||+|++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+.+...++||||++|+||+++|+
T Consensus 318 p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~~~~~~~~~~ggtsiLI~Vgv~~~~ 397 (410)
T TIGR00967 318 PEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDT 397 (410)
T ss_pred HHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCchHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877666554458999999999999999
Q ss_pred HHHHHHHHHHccC
Q 014159 404 ARKVQAEIISQKY 416 (429)
Q Consensus 404 ~~qi~~~~~~~~Y 416 (429)
+||+++++.+|+|
T Consensus 398 ~~qi~~~~~~~~y 410 (410)
T TIGR00967 398 YKQLESYLISRNY 410 (410)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999998
No 6
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=5.4e-95 Score=742.46 Aligned_cols=389 Identities=22% Similarity=0.377 Sum_probs=335.9
Q ss_pred hhhhcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHH
Q 014159 9 GDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQ 88 (429)
Q Consensus 9 ~~~~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~Q 88 (429)
+++.++|+|+|++||++++++||+|+|||+||+|.++..+. .+++++++|+++||+++|+|+|+|||+|||||||+||
T Consensus 5 ~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~--~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsII~Q 82 (404)
T PRK12417 5 KKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGG--HESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMIILQ 82 (404)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCc--cchHHHHHHHhcccccccCcHHHHccHHHHHHHHHHH
Confidence 45667899999999999999999999999999999987642 2578999999999999999999999999999999999
Q ss_pred HHhcc-chhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 014159 89 LLAQI-NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGER 167 (429)
Q Consensus 89 Ll~~~-~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~ 167 (429)
+++.. .|+++|++| | |+||+| ||+|+++|++||++++.++... .+....++++++++|++||++++||||+
T Consensus 83 LL~~~~~~~l~~~~k-e-e~gr~~-----r~ltl~la~iQs~~~~~~~~~~-~~~~~~~~~~~~l~L~aGt~~~~WL~E~ 154 (404)
T PRK12417 83 LFSYRKRDGLMKQTI-E-EQHYRE-----RILTLIIAVIQSLAVILSLPSK-ERISQTNILLNTLILVTGTMFLVWLSDL 154 (404)
T ss_pred HHHhCCCcchhhcCh-H-HHHHHH-----HHHHHHHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 799999886 5 788874 9999999999999998876422 1222235677889999999999999999
Q ss_pred hhcccCCCchhHHHHHHHhhhchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccccCCC
Q 014159 168 ISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGG 247 (429)
Q Consensus 168 it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~ 247 (429)
|||||+| |+|++|++||++++|+++.+.++.. . ......+.+.++++++++++|++|||||+||++|..+++
T Consensus 155 it~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~---~--~~~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~~~~~~-- 226 (404)
T PRK12417 155 NARYGIG-GPMPIVLVSMIKSIPQDVIEYIDAS---H--IVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNRFK-- 226 (404)
T ss_pred HhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHhheEEEEEEEEhhhhccCC--
Confidence 9999999 9999999999999999987665321 1 111122333445566799999999999999998876543
Q ss_pred CCCccccceeecccCChhHHHHHHhHhhHHHHHHhh----cc-hHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhcc
Q 014159 248 LQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----GI-AALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQL 322 (429)
Q Consensus 248 ~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~----~~-~~~~~~~~~~~~~~~~y~~~y~~li~~fs~~~~~i~~ 322 (429)
+++|+|+|+|+||+||+|||||++++|+++++++ ++ .|.+.....+++++++|.++|++++++|||||+.+++
T Consensus 227 --~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~fs~fys~i~~ 304 (404)
T PRK12417 227 --MYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFGSPLGVTVYLILQFLLSYFFSFVNI 304 (404)
T ss_pred --CCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999999999999999999999875 32 2444444557788899999999999999999999999
Q ss_pred ChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhcccc--ccccccchhhHHHHHHH
Q 014159 323 DPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLT--AFRGFAGTSVLILVGCA 400 (429)
Q Consensus 323 ~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~--~~~~~gGtslLI~V~v~ 400 (429)
||||+||||||||+||||+||||+|+|||+|+++|+|++||++++++|++|.+++.. +.+ .+. +||||++|+|||+
T Consensus 305 nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~~~~~-~~~~~~~~-~ggtsllI~Vgv~ 382 (404)
T PRK12417 305 NTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLF-DPHLSTEI-YFSGQFMMFVGMS 382 (404)
T ss_pred CHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccce-eccchheehhhhH
Confidence 999999999999999999999999999999999999999999999999999998654 332 122 7899999999999
Q ss_pred HHHHHHHHHHHHHccCCCe
Q 014159 401 TDTARKVQAEIISQKYKNI 419 (429)
Q Consensus 401 ~~~~~qi~~~~~~~~Y~~~ 419 (429)
+|+.||+|+++.+++|+++
T Consensus 383 ldt~~qi~s~l~~~~Y~~~ 401 (404)
T PRK12417 383 FNIADEIRALLYFDKYKPL 401 (404)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999987
No 7
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=2.3e-89 Score=700.58 Aligned_cols=387 Identities=21% Similarity=0.358 Sum_probs=323.7
Q ss_pred chhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHhc-c
Q 014159 15 PLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ-I 93 (429)
Q Consensus 15 ~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~~-~ 93 (429)
.+|+|++||++++++||+|++||+||+|.+.......+++.++++|+++||+++|+|+|+|||+|||||||+||+++. .
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~~~ 80 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSFTK 80 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhHHHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHhCc
Confidence 378999999999999999999999999997632111235688999999999999999999999999999999999998 6
Q ss_pred chhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 014159 94 NPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKL 173 (429)
Q Consensus 94 ~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~it~~Gi 173 (429)
.|++++++| | |.|| .||++|+++|++||.+++.++... .+....+..+++++|++|+++++||||+|||||+
T Consensus 81 ~~~l~~~~~-~-~~~~-----~tr~ltl~~a~iQs~~~~~~~~~~-~~~~~~~~~~~vl~L~~Gt~iv~wL~E~it~~Gi 152 (395)
T TIGR02920 81 SDGFDAQSP-K-EQQY-----RERFLTLIIAIIQGLAIIHSFTNK-NGLSDFNMLLATLILVTGTCLLVWLADLNAKYGI 152 (395)
T ss_pred CcchhhhCH-H-HhhH-----HHHHHHHHHHHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899999986 4 4444 399999999999999998776422 1221224667789999999999999999999999
Q ss_pred CCchhHHHHHHHhhhchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccccCCCCCCccc
Q 014159 174 GNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAY 253 (429)
Q Consensus 174 GnG~SliI~~~I~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~y 253 (429)
| |+|++|++||++++|+.+.+.++ .+....++..++.+++++++++++|++|||||++|++|.. |+ ++++|
T Consensus 153 G-G~sllI~~~I~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~~-~~---~~~~y 223 (395)
T TIGR02920 153 G-GSMPIVLVSMLKNIPSNVFELFQ----MSYIWLIALLILLTLVALFLLAFIERAEYRIPVNDISLHN-RS---NLMSY 223 (395)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHheecceEEEEEEEchhhc-cC---CCCcc
Confidence 9 99999999999999998766543 1122222233444556667799999999999999987654 22 46799
Q ss_pred cceeecccCChhHHHHHHhHhhHHHH----HHhhcc-hHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHhccChHHHH
Q 014159 254 LPFKVNSSGVMPIIFSTSSLALPGTL----ARFTGI-AALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVS 328 (429)
Q Consensus 254 lPiKln~aGvmPiIfassll~~p~~i----~~~~~~-~~~~~~~~~~~~~~~~y~~~y~~li~~fs~~~~~i~~~p~~iA 328 (429)
+|+|+||+|+||+|||++++++|+++ ++++++ .+.+.....+++++|+|.++|.+++++|||||+.+++||||+|
T Consensus 224 iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~lii~fs~fys~i~~nP~diA 303 (395)
T TIGR02920 224 LPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQFSFSSPVGILIYLILQMLLSYFFTFVNINPKEIS 303 (395)
T ss_pred cceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHheECHHHHH
Confidence 99999999999999999999999555 454432 2222222335667788999999999999999999999999999
Q ss_pred HHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhcc-ccccccccchhhHHHHHHHHHHHHHH
Q 014159 329 EQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTH-LTAFRGFAGTSVLILVGCATDTARKV 407 (429)
Q Consensus 329 e~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~-~~~~~~~gGtslLI~V~v~~~~~~qi 407 (429)
|||||||++|||+||||+|+|||+|+++|+|++||++++++|++|++++...+ ...+. +||||++|+|||++|++||+
T Consensus 304 ~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~~~~~-~ggtsllI~vgv~ldt~~qi 382 (395)
T TIGR02920 304 KSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHLLTEA-YIPGQFMMITGMSFNIADEI 382 (395)
T ss_pred HHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee-ehhhhhhhhhhhHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999876644 42333 78999999999999999999
Q ss_pred HHHHHHccCCCe
Q 014159 408 QAEIISQKYKNI 419 (429)
Q Consensus 408 ~~~~~~~~Y~~~ 419 (429)
|+++.++||+++
T Consensus 383 ~~~~~~~~Y~~~ 394 (395)
T TIGR02920 383 RTILYFDRYKPL 394 (395)
T ss_pred HHHHHHHhhCCC
Confidence 999999999986
No 8
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=6.7e-89 Score=708.66 Aligned_cols=384 Identities=22% Similarity=0.281 Sum_probs=325.2
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHhc
Q 014159 13 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 92 (429)
Q Consensus 13 ~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~~ 92 (429)
|.++|+|++||++++++||+|+|||+||+|.++ .+.++++++++||+ ++|+|+|||+|||||||+||+++.
T Consensus 23 ~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-------~~~l~~l~~~~gg~--~~slf~LGI~PyItAsII~QLL~~ 93 (462)
T PRK08568 23 HVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-------QDLFELLRIIFAGS--FGTLLQLGIGPIVTAGIILQLLVG 93 (462)
T ss_pred CccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-------ccHHHHHHHHhCCc--ccchHHhCcHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999864 25788999999998 899999999999999999999975
Q ss_pred cchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---ccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 014159 93 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVN---DFSTDWVLTSVTLLTLGSAFTTYIGERIS 169 (429)
Q Consensus 93 ~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~---~~~~~~~~~~vl~L~aGs~~l~wL~e~it 169 (429)
.++.++++ +.|+||||+|++||++|+++|++||.+++.+++.... ..+..+.++++++|++|+++++||||+||
T Consensus 94 --~~l~~l~~-~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt~i~~wL~E~It 170 (462)
T PRK08568 94 --SKLINLDL-SDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVS 170 (462)
T ss_pred --Cchheecc-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24445544 5589999999999999999999999999987632111 13444677888999999999999999999
Q ss_pred cccCCCchhHHHHHHHhhhchHHHHHHHH--------------HHhhcCc----------hhHHHHHHHHHHHHHHHHHh
Q 014159 170 DLKLGNGTSLLIFTSIISYLPASFGRTVA--------------EAFQDGN----------YIGLATIIISFILLVLGIVY 225 (429)
Q Consensus 170 ~~GiGnG~SliI~~~I~~~lp~~i~~~~~--------------~~~~~~~----------~~~~~~~~~~~l~~~~~~v~ 225 (429)
|||+|||+|++|++||++++|+++.+.+. ....+++ +++ +..++++++++++++|
T Consensus 171 k~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~l~~-l~~~~~~~~i~~~~v~ 249 (462)
T PRK08568 171 KWGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTTRGLL-LLGLITTIVIFLIVVY 249 (462)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHhcCccchhhhhcccccH-HHHHHHHHHHHHHhee
Confidence 99999999999999999999998765430 1111111 122 3456667788899999
Q ss_pred hhccEEeeeeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc---hHH-----------HHH
Q 014159 226 VQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AAL-----------KKA 291 (429)
Q Consensus 226 ~~~~~~rIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~---~~~-----------~~~ 291 (429)
+|++|||||+||+| .+ ++++|+|+|+||+|+||+|||++++++|+++++++.+ ++. ...
T Consensus 250 ~q~~~~~IPI~~~k-~~------g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~l 322 (462)
T PRK08568 250 LESMRVEIPLSHGR-VR------GARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLGIPILGTYDSSGASPISGL 322 (462)
T ss_pred EEeeEEEEEEEecc-cc------CCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhcCchhhhhcccccccchhHH
Confidence 99999999999986 33 4678999999999999999999999999999887632 122 223
Q ss_pred HHhcCC--------CCcc----hHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHcCCccccccCChh-HHHHHHHHHhH
Q 014159 292 AVALNP--------GGSF----YLPTNILLIAFFNYYYTFLQ-LDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKTVLSR 357 (429)
Q Consensus 292 ~~~~~~--------~~~~----y~~~y~~li~~fs~~~~~i~-~~p~~iAe~Lkk~g~~IpGirpG~~-T~~yL~k~i~r 357 (429)
.++++| .+++ |.++|++++++|||||+++. +||||+||||||||++|||+||||+ |+|||+|+++|
T Consensus 323 ~~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r 402 (462)
T PRK08568 323 AYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPP 402 (462)
T ss_pred HHHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccCcCCCchHHHHHHHHHHHH
Confidence 444543 2454 78889999999999999995 9999999999999999999999997 99999999999
Q ss_pred HHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHccCCCee-eecc
Q 014159 358 ISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE-FYDI 424 (429)
Q Consensus 358 ~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~~~~~Y~~~~-~~~~ 424 (429)
+|++||++++++|++|++++. . .+|||++|+||+++|++||+++++.+|+|++++ +.||
T Consensus 403 ~t~~Ga~~l~~ia~lp~~~~~------~--g~gtslLI~Vgv~~~~~~qi~~~~~~~~Y~~~~~~~~~ 462 (462)
T PRK08568 403 VTVIGGAIVGLLAVLADLLGA------L--GGGTGLLLTVSIVYQLYEEIAREQLMEMYPLLRRFLGE 462 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------c--CCchhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 999999999999999999872 2 479999999999999999999999999999994 7664
No 9
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=1.5e-81 Score=654.29 Aligned_cols=373 Identities=19% Similarity=0.217 Sum_probs=306.2
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHhc
Q 014159 13 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 92 (429)
Q Consensus 13 ~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~~ 92 (429)
+.++|+|++||++++++||+|++||+||+|.+... ++++++.++|+|+ ++|+|+|||+|||||||+|||+++
T Consensus 27 ~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~-----~~~~~~~~ifag~---~~slf~LGI~PyItAsII~QLL~~ 98 (474)
T PTZ00219 27 KIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSS-----DPFYWMRVILASN---RGTLMELGISPIVTSSMVMQLLAG 98 (474)
T ss_pred CccHHHHHHHHHHHHHHHHHhccCcCCCcChhhcc-----chHHHHHHHHhcC---cchHHHhccHHHHHHHHHHHHHhh
Confidence 35899999999999999999999999999997543 4677788888665 889999999999999999999975
Q ss_pred cchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc--cccchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 014159 93 INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV--NDFSTDWVLTSVTLLTLGSAFTTYIGERISD 170 (429)
Q Consensus 93 ~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~--~~~~~~~~~~~vl~L~aGs~~l~wL~e~it~ 170 (429)
.++.++++ +.+++|||+|++||++|+++|++||++++... .++ .+.+.....++++||++|+++++||||++||
T Consensus 99 --~~l~~~~~-~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~-~~g~~~~~~~~~~~~iilqL~~g~~~v~wL~E~Itk 174 (474)
T PTZ00219 99 --SKIIDVDQ-NNKEDRALFEGAQKLLGLLITLGEAVAYVWSG-MYGDISEIGAGNAILIILQLFFAGIVVILLDELLQK 174 (474)
T ss_pred --CCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 13333333 34456999999999999999999999998542 222 2334445677889999999999999999999
Q ss_pred -ccCCCchhHHHHHHHhhhchH-HH-----------------HHHHHHHhhc-------------CchhHHHHHHHHHHH
Q 014159 171 -LKLGNGTSLLIFTSIISYLPA-SF-----------------GRTVAEAFQD-------------GNYIGLATIIISFIL 218 (429)
Q Consensus 171 -~GiGnG~SliI~~~I~~~lp~-~i-----------------~~~~~~~~~~-------------~~~~~~~~~~~~~l~ 218 (429)
||+|||+|++|++||++++|+ .+ .+.+...... .+++++ +.++++++
T Consensus 175 g~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l~~~-~~~~~~~~ 253 (474)
T PTZ00219 175 GYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHLPNL-TNLLATVL 253 (474)
T ss_pred CcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhcccccH-HHHHHHHH
Confidence 999999999999999999983 33 1111100010 012332 23466778
Q ss_pred HHHHHHhhhccEEeeeeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhc----ch--------
Q 014159 219 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG----IA-------- 286 (429)
Q Consensus 219 ~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~----~~-------- 286 (429)
++.++||+|++|||||++|+|+. ++++++|+|+||+|+||+|||++++++|++++++++ ++
T Consensus 254 i~~~vv~~~~~~~~IPi~~~~~~-------g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~ 326 (474)
T PTZ00219 254 VFLVVIYFQGFRVDLPLKSQKVR-------GQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLINLLGQ 326 (474)
T ss_pred HHHhheeeeeeEEEEeeeccccc-------CcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Confidence 88999999999999999999643 356777999999999999999999999999988862 11
Q ss_pred HHH--H---------HHHhcCC--------CCcchHHHHHHHHHHHHHHHHHhc-----cChHHHHHHHHHcCCcccccc
Q 014159 287 ALK--K---------AAVALNP--------GGSFYLPTNILLIAFFNYYYTFLQ-----LDPDDVSEQLKRQGASIPLVR 342 (429)
Q Consensus 287 ~~~--~---------~~~~~~~--------~~~~y~~~y~~li~~fs~~~~~i~-----~~p~~iAe~Lkk~g~~IpGir 342 (429)
|.+ . ..++++| .+|+|.++|.+++++||+||+.+. +||||+||||||+|++|||+|
T Consensus 327 ~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~R 406 (474)
T PTZ00219 327 WQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYR 406 (474)
T ss_pred eeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcC
Confidence 211 0 2334553 467899999999999999999976 899999999999999999999
Q ss_pred CChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 014159 343 PGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIIS 413 (429)
Q Consensus 343 pG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~~~ 413 (429)
|||+|+|||+|+++|+|++||++++++|++|++++. . .||||+||+||++.+++|++.+|+.+
T Consensus 407 pGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~------~--~gGTslLI~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 407 DSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGA------I--GSGTGILLAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------c--CCchhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999872 2 48999999999999999999999765
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=1.6e-76 Score=598.51 Aligned_cols=327 Identities=41% Similarity=0.643 Sum_probs=283.3
Q ss_pred hhhhcCchHHHHHHHHHHHHhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-c-------c
Q 014159 71 GICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVN-D-------F 142 (429)
Q Consensus 71 SlfsLGI~PyItAsIi~QLl~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~-~-------~ 142 (429)
|+|+|||+|||||||+||++. .|+++|+++ |||+||||++++||++|+++|++||++++..++.+.. + .
T Consensus 1 SlfsLGI~PyitAsIi~Qll~--~~~l~~l~~-~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~ 77 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLI--IPKLIKLQK-EGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGS 77 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHH--SSSSSSHST-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTT
T ss_pred ChHhhccHHHHHHHHHHHHHh--cccHHHhhh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccch
Confidence 699999999999999999995 499999997 7999999999999999999999999999977665532 1 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHhh----cCchhHHHHHHHHHHH
Q 014159 143 STDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQ----DGNYIGLATIIISFIL 218 (429)
Q Consensus 143 ~~~~~~~~vl~L~aGs~~l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~----~~~~~~~~~~~~~~l~ 218 (429)
+....++++++|++|+++++||||+|||||+|||+|++|++||++++|+++.+.++.... ..+....+..++++++
T Consensus 78 ~~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 157 (346)
T PF00344_consen 78 GFINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALFLLIILIITLV 157 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 344457889999999999999999999999999999999999999999998877765431 1233334556777788
Q ss_pred HHHHHHhhhccEEeeeeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcch----HH-HHHHH
Q 014159 219 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA----AL-KKAAV 293 (429)
Q Consensus 219 ~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~----~~-~~~~~ 293 (429)
+++++|++|++|||||+||+++. +...++++|+|+|+||+|+||+||+++++++|+++++++++. +. +...+
T Consensus 158 ~~~~~v~l~~~~~rIPi~~~~~~---~~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~ 234 (346)
T PF00344_consen 158 VIALVVYLQEAERRIPIQYARIV---NSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAY 234 (346)
T ss_dssp HHHHHHHHHHCEEEECEBBSSSB-----SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHH
T ss_pred HHHhheeeeeeEEEEEEEecccc---ccCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCccccHHHHHHH
Confidence 89999999999999999998763 223367999999999999999999999999999999987432 11 11344
Q ss_pred hc--CCCCcchHHHHHHHHHHHHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHH
Q 014159 294 AL--NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAA 371 (429)
Q Consensus 294 ~~--~~~~~~y~~~y~~li~~fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~ 371 (429)
++ +++.++|..+|.+++++|||+|+++++||||+||||||+|+||||+||||+|+|||+|+++|++++||++++++|+
T Consensus 235 ~~~~~~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~~~G~~~l~~ia~ 314 (346)
T PF00344_consen 235 YFSQNLNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLSFLGALFLALIAV 314 (346)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56 5667889999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccccccccccchhhHHHHHHHHHHHH
Q 014159 372 GPAVIEQTTHLTAFRGFAGTSVLILVGCATDTAR 405 (429)
Q Consensus 372 ~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~ 405 (429)
+|++++...+ .... ++|||++|+||+++|++|
T Consensus 315 ~p~~~~~~~~-~~~~-~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 315 LPLIFGLFGG-SSLF-FGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHTTSSS-CSCC-CTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-cchh-hHHHHHHHHHHHHHHhcC
Confidence 9999987766 3333 799999999999999986
No 11
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-56 Score=436.54 Aligned_cols=377 Identities=20% Similarity=0.214 Sum_probs=315.8
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHh
Q 014159 12 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 91 (429)
Q Consensus 12 ~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~ 91 (429)
.|.++|+|++||...+++|.+++|||++|+..++-+| +++ +++...|.| |.++|+||+.|.+|++.+||+|+
T Consensus 25 rk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~D-----P~y-w~Rvilasn--rgTLMelGisPivtSglimQlLa 96 (476)
T KOG1373|consen 25 RKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTAD-----PFY-WMRVILASN--RGTLMELGISPIVTSGLIMQLLA 96 (476)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCC-----cHH-HHHHHHhcC--CcchhhhccchhhHHHHHHHHHc
Confidence 4569999999999999999999999999998765543 444 444444765 99999999999999999999999
Q ss_pred ccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc--cccchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 014159 92 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV--NDFSTDWVLTSVTLLTLGSAFTTYIGERIS 169 (429)
Q Consensus 92 ~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~--~~~~~~~~~~~vl~L~aGs~~l~wL~e~it 169 (429)
+ .++.|.+. +-++||+.+|..||++++++++.||..++.++ .|+ .+.+...+.++++||+..+.+++.|||+++
T Consensus 97 g--~kiIeV~~-~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG-~yG~p~dLg~~~clLii~QL~~Agiiv~lLdEllq 172 (476)
T KOG1373|consen 97 G--SKIIEVNF-NIKEDRELFNGAQKLFAIIITVGQAVVYVMTG-MYGSPSDLGVGICLLIILQLFFAGIIVILLDELLQ 172 (476)
T ss_pred c--CcEEEecC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCChhhcchhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8 67777765 56778999999999999999999999999987 555 566777788999999999999999999999
Q ss_pred c-ccCCCchhHHHHHHHhhhchHH------------------HHHHHH-------------HHhhcCchhHHHHHHHHHH
Q 014159 170 D-LKLGNGTSLLIFTSIISYLPAS------------------FGRTVA-------------EAFQDGNYIGLATIIISFI 217 (429)
Q Consensus 170 ~-~GiGnG~SliI~~~I~~~lp~~------------------i~~~~~-------------~~~~~~~~~~~~~~~~~~l 217 (429)
| ||+|||+|++|.+|||+++.+. +.+.++ +.+...|+|++ ..+++++
T Consensus 173 KGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~RqnLPNl-~nl~at~ 251 (476)
T KOG1373|consen 173 KGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQNLPNL-TNLLATV 251 (476)
T ss_pred hccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhcccHH-HHHHHHH
Confidence 9 9999999999999999998642 111121 11222567774 5678888
Q ss_pred HHHHHHHhhhccEEeeeeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc----h-------
Q 014159 218 LLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI----A------- 286 (429)
Q Consensus 218 ~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~----~------- 286 (429)
+++++++|+|..|+++|++++| .| |+.+.+|||+.|++.||+|+.|++.++...++|++.. +
T Consensus 252 lif~iViYlQgfRVeLPirS~r-~R------G~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v~llG 324 (476)
T KOG1373|consen 252 LIFLIVIYLQGFRVELPIRSTR-AR------GQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLVRLLG 324 (476)
T ss_pred HHHHHHhhccceEEEeeecchh-hc------ccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEe
Confidence 9999999999999999999875 66 6789999999999999999999999998888887521 1
Q ss_pred -HHHH-----------HHHhcCC--------CCcchHHHHHH----HHHHHHHHHHHh-ccChHHHHHHHHHcCCccccc
Q 014159 287 -ALKK-----------AAVALNP--------GGSFYLPTNIL----LIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLV 341 (429)
Q Consensus 287 -~~~~-----------~~~~~~~--------~~~~y~~~y~~----li~~fs~~~~~i-~~~p~~iAe~Lkk~g~~IpGi 341 (429)
|.+. +.++.+| .+|++.++|++ -|.+||.-|.++ +.+|||+|++||+|+..++|+
T Consensus 325 ~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mvm~G~ 404 (476)
T KOG1373|consen 325 VWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMVMRGH 404 (476)
T ss_pred eeecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccceecCc
Confidence 2110 1122222 24556556654 489999999999 999999999999999999999
Q ss_pred cCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHccCC
Q 014159 342 RPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYK 417 (429)
Q Consensus 342 rpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~~~~~Y~ 417 (429)
|.+ ++.|+|+|++|.++++||.+++.++++.++++ .. ++||+++++|+++++++|++++|...+.+.
T Consensus 405 RE~-n~~~eLnr~IPtAA~~Gg~~igaltV~~d~lg------ai--GsgtgIllavt~iyqy~E~~~kE~~~~~g~ 471 (476)
T KOG1373|consen 405 RET-NMAKELNRYIPTAAAFGGLCIGALTVLADLLG------AI--GSGTGILLAVTIIYQYFEIFAKEQAQEGGF 471 (476)
T ss_pred chh-hHHHHHHhhccHHHHhhhhHHHHHHHHHHHhh------cc--cCCceEEeehHHHHHHHHHHHHHHhhcCCc
Confidence 996 79999999999999999999999999999987 33 689999999999999999999998887654
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=90.30 E-value=0.1 Score=35.27 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=20.3
Q ss_pred HHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCC
Q 014159 28 ALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGG 66 (429)
Q Consensus 28 ~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~ 66 (429)
++|.+.++||++|++..... +.+.+++++.+|+
T Consensus 1 ilYl~ls~ipLyG~~~~~~~------D~f~~~R~i~As~ 33 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSS------DPFYWLRAIFASN 33 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSS------CCHTTTHHHHTSS
T ss_pred CEEEEeeCCccccccCCCcC------CHHHHHHHHHccc
Confidence 57889999999999444333 2333455455664
No 13
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=51.63 E-value=29 Score=28.25 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=43.0
Q ss_pred HHHHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHh
Q 014159 312 FFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAG 372 (429)
Q Consensus 312 ~fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~ 372 (429)
.+.-+|.-+-+.-+...| .|..+||--||.|..-.+.|...+.|.++++.-++++.+
T Consensus 14 Ww~~lF~vLP~gvrtq~E----~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 14 WWIVLFAVLPFGVRTQDE----AGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred HHHHHHHHccCCccccCc----CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445444443334 488899999999999999999999999999988877665
No 14
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=47.27 E-value=41 Score=29.52 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=21.1
Q ss_pred cCCccccccCChhHHHHHHHHHhHHHHHhHHH
Q 014159 334 QGASIPLVRPGKSTAAFLKTVLSRISVLGSVF 365 (429)
Q Consensus 334 ~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~ 365 (429)
....|||+|||+.-.+-+.+....- +.....
T Consensus 37 k~~~ipGFRkGK~P~~vi~~~~g~~-i~~~~~ 67 (145)
T PF05697_consen 37 KKVKIPGFRKGKAPRNVIEKRYGKE-IREEAI 67 (145)
T ss_dssp TTTTBTTS-TTSS-HHHHHHHHCHH-HHHHHH
T ss_pred hhCCCCCCCCCCCCHHHHHHHHHHH-HHHHHH
Confidence 4568999999998878777777665 444444
No 15
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=40.57 E-value=47 Score=29.89 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHHHHhccchhhHHhhhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 014159 86 VFQLLAQINPKLQDLQKREGEAGRKKVLQ--YTRYASVGFAIVQAIGQV 132 (429)
Q Consensus 86 i~QLl~~~~p~l~~l~~~~g~~gr~~~~~--~tr~ltl~la~iQa~~~~ 132 (429)
|=|+|. -.+++++++|+++||-+++. ..+-=.+++|..-|+.-+
T Consensus 4 Ik~IL~---~~id~iN~~E~RDnkprFs~~Fi~~HP~L~~~M~~~y~~~ 49 (155)
T PF10777_consen 4 IKRILI---EEIDRINREEKRDNKPRFSSSFIRNHPYLCLAMYAAYLAV 49 (155)
T ss_pred HHHHHH---HHHHHHHHHhccCCCccccHHHHHhCcHHHHHHHHHHHHH
Confidence 446665 47889999899999888764 222223344444444433
No 16
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=39.21 E-value=74 Score=26.87 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhccch-hhHHhhhhhcHHHHHHHHHHHHHHHH
Q 014159 79 PFINAQIVFQLLAQINP-KLQDLQKREGEAGRKKVLQYTRYASV 121 (429)
Q Consensus 79 PyItAsIi~QLl~~~~p-~l~~l~~~~g~~gr~~~~~~tr~ltl 121 (429)
=.++.|+++|++.++.- -..+.+- +.++.+++.++.-.+.+.
T Consensus 46 ~Li~iSlvLQv~vgilli~~~~~n~-~~~~~~~~~~~lnn~~~~ 88 (104)
T PF04923_consen 46 TLISISLVLQVVVGILLIFISRYNI-NKPEKQRRANRLNNWATI 88 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHH
Confidence 45789999999987522 2223332 223334445544444443
No 17
>PHA01632 hypothetical protein
Probab=30.67 E-value=37 Score=25.41 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.9
Q ss_pred cCChhHHHHHHHHHhHH
Q 014159 342 RPGKSTAAFLKTVLSRI 358 (429)
Q Consensus 342 rpG~~T~~yL~k~i~r~ 358 (429)
-|.+||++.|+|+++.+
T Consensus 24 vp~kpteeelrkvlpki 40 (64)
T PHA01632 24 VPQKPTEEELRKVLPKI 40 (64)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 57899999999999875
No 18
>COG5454 Predicted secreted protein [Function unknown]
Probab=30.09 E-value=2.8e+02 Score=22.49 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=44.0
Q ss_pred HHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHH
Q 014159 316 YYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIE 377 (429)
Q Consensus 316 ~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~ 377 (429)
.|+-+-+.-+..+| .|+.-||.-|+.++.-.+.|.+-|.|+..|+..++--.+-...+
T Consensus 18 LFavLP~g~Rtq~e----e~dv~lGtv~sAP~~p~~~R~vl~TT~~savi~gl~y~lt~~~g 75 (89)
T COG5454 18 LFAVLPLGVRTQDE----EGDVTLGTVPSAPANPHLLRAVLRTTVASAVIFGLFYGLTHFLG 75 (89)
T ss_pred HHHHhcccccchhh----cCCCCCCcCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444444 57999999999999999999999999999998888777766554
No 19
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=27.61 E-value=3.3e+02 Score=25.34 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHcCCccccccCChh-HHHHHHH
Q 014159 305 TNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKT 353 (429)
Q Consensus 305 ~y~~li~~fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~-T~~yL~k 353 (429)
+..+++.+||.+|++-- ..+||+|++. =|..||.|. |.+-|+.
T Consensus 63 ~~gl~~l~~si~~~fry---~Rlar~L~~~---~~~~~P~k~~~~~~l~~ 106 (183)
T PF12263_consen 63 ICGLVALFFSIFWSFRY---TRLARRLRSP---NPAKRPSKADVVRLLRI 106 (183)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhccc---CCCCCCCHHHHHHHHHH
Confidence 44445555555555432 6789999944 578899864 5555544
No 20
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.80 E-value=2.3e+02 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHcCCccccccCChhHHHHHHHHH
Q 014159 323 DPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 355 (429)
Q Consensus 323 ~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i 355 (429)
||+|+|++.+... .++..++.++.++....+.
T Consensus 52 ~P~~iA~~i~~~~-~i~~~~~~~~~~~~~~~i~ 83 (181)
T PF08006_consen 52 SPKEIAREILAEY-SIKEEEKKKSWRNILRAIL 83 (181)
T ss_pred CHHHHHHHHHHhh-hhhhhhccchhhhhHHHHH
Confidence 8999999999764 4555555544555444433
No 21
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=25.77 E-value=99 Score=23.37 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=18.8
Q ss_pred ccChHHHHHHHHHcCCccccccCCh
Q 014159 321 QLDPDDVSEQLKRQGASIPLVRPGK 345 (429)
Q Consensus 321 ~~~p~~iAe~Lkk~g~~IpGirpG~ 345 (429)
|.+.+|+++++++.|.--..-++.+
T Consensus 20 GLs~~ev~~r~~~~G~N~l~~~~~~ 44 (69)
T PF00690_consen 20 GLSSEEVEERRKKYGPNELPEPKKK 44 (69)
T ss_dssp BBTHHHHHHHHHHHSSSSTTTTTSS
T ss_pred CCCHHHHHHHHHhcccccccccccC
Confidence 7899999999999997554433333
No 22
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.26 E-value=69 Score=26.76 Aligned_cols=36 Identities=22% Similarity=0.570 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHcCCccccccCChh
Q 014159 308 LLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKS 346 (429)
Q Consensus 308 ~li~~fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~ 346 (429)
.++++|..|| |+.+.|.+ ++.|+....+...++|.+
T Consensus 14 ~~vl~~~ify-Fli~RPQr--Kr~K~~~~ml~sL~kGD~ 49 (97)
T COG1862 14 PLVLIFAIFY-FLIIRPQR--KRMKEHQELLNSLKKGDE 49 (97)
T ss_pred HHHHHHHHHH-HhhcCHHH--HHHHHHHHHHHhccCCCE
Confidence 3445566666 56677776 888888888888888864
No 23
>PRK01490 tig trigger factor; Provisional
Probab=25.25 E-value=65 Score=33.72 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=21.1
Q ss_pred HHHHHcCCccccccCChhHHHHHHHHHhH
Q 014159 329 EQLKRQGASIPLVRPGKSTAAFLKTVLSR 357 (429)
Q Consensus 329 e~Lkk~g~~IpGirpG~~T~~yL~k~i~r 357 (429)
++++| ...|||+|||+.-..-+.+....
T Consensus 33 ~~~~k-~~~ipGFRkGkvP~~ii~k~~g~ 60 (435)
T PRK01490 33 KKLAK-TVRIPGFRKGKVPRKIVEQRYGE 60 (435)
T ss_pred HHHHh-hCcCCCccCCCCCHHHHHHHHhH
Confidence 34444 47999999999888888877654
No 24
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=24.61 E-value=3.1e+02 Score=23.19 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=19.5
Q ss_pred HHhhhhhc-ccCCCchhHHHHHHHhhhch
Q 014159 163 YIGERISD-LKLGNGTSLLIFTSIISYLP 190 (429)
Q Consensus 163 wL~e~it~-~GiGnG~SliI~~~I~~~lp 190 (429)
.+.|.+.+ -|+|.|++++.+.+++.-+-
T Consensus 51 ~~~~~vA~~lGi~~~~n~lf~~~i~~ll~ 79 (115)
T PF10066_consen 51 NILDWVAKLLGIGRPPNLLFYLGILFLLV 79 (115)
T ss_pred hHHHHHHHHHCCCchhHHHHHHHHHHHHH
Confidence 34444555 79999999888887776543
No 25
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=22.82 E-value=1.2e+02 Score=22.44 Aligned_cols=19 Identities=42% Similarity=0.426 Sum_probs=16.6
Q ss_pred HhccChHHHHHHHHHcCCc
Q 014159 319 FLQLDPDDVSEQLKRQGAS 337 (429)
Q Consensus 319 ~i~~~p~~iAe~Lkk~g~~ 337 (429)
.-+.+.+++.+.|+++|+|
T Consensus 27 ~~~~~~~~vl~~l~~nGg~ 45 (53)
T PF10905_consen 27 QRQLDWEDVLEWLRENGGY 45 (53)
T ss_pred HcCCCHHHHHHHHHHcCCC
Confidence 3478899999999999987
No 26
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=22.69 E-value=2.9e+02 Score=26.13 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHccCCCeeeeccC
Q 014159 392 SVLILVGCATDTARK--VQAEIISQKYKNIEFYDID 425 (429)
Q Consensus 392 slLI~V~v~~~~~~q--i~~~~~~~~Y~~~~~~~~~ 425 (429)
+..|..|+..|.... +-.....|+|++.|-|.++
T Consensus 173 ~~~I~lGi~~q~~tllPi~~k~~~~~~~~~~~~~~~ 208 (210)
T PRK01100 173 KTLIMVGSLFQVISINPITYKLLNRRYKNYEKYERN 208 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhc
Confidence 456789999888777 4557888999998755554
No 27
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=20.24 E-value=82 Score=27.07 Aligned_cols=33 Identities=9% Similarity=0.400 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHcCCccccccCCh
Q 014159 309 LIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGK 345 (429)
Q Consensus 309 li~~fs~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~ 345 (429)
++++|..+| ++ +.|.+ |+-||+...+.+.+||.
T Consensus 9 ~vv~~~i~y-f~-iRPQk--Kr~Ke~~em~~sLk~GD 41 (113)
T PRK06531 9 FVVMLGLIF-FM-QRQQK--KQAQERQNQLNAIQKGD 41 (113)
T ss_pred HHHHHHHHH-he-echHH--HHHHHHHHHHHhcCCCC
Confidence 455666666 43 77776 77777777777888885
Done!