Query 014159
Match_columns 429
No_of_seqs 150 out of 1068
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 06:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5a_ f.41.1.1 (A:) Preprote 100.0 7.2E-89 5.3E-93 700.0 29.7 370 12-411 18-421 (422)
2 d1p9ya_ d.241.2.1 (A:) Trigger 63.4 2.4 0.00017 33.1 3.3 35 322-356 19-59 (117)
3 d1t11a2 d.241.2.1 (A:1-129) Tr 41.1 8.8 0.00064 30.0 3.3 24 334-357 37-60 (129)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 21.7 84 0.0061 29.2 7.3 54 321-378 23-77 (472)
5 d1zl8a1 a.194.1.1 (A:4-53) Lin 18.8 33 0.0024 22.2 2.3 22 97-119 13-34 (50)
6 d1y74a1 a.194.1.1 (A:17-73) Li 15.5 36 0.0026 22.6 1.9 23 97-120 14-36 (57)
7 d1rh5a_ f.41.1.1 (A:) Preprote 9.1 1.1E+02 0.0083 28.1 4.1 36 156-193 379-417 (422)
8 d2f2ga1 a.132.1.3 (A:5-219) Se 7.9 1.3E+02 0.0094 24.2 3.6 50 325-374 86-135 (215)
9 d2edua1 a.60.2.7 (A:8-98) KIF2 7.8 2E+02 0.015 20.4 4.2 54 72-126 35-90 (91)
10 d2q02a1 c.1.15.4 (A:1-271) Put 6.7 2.1E+02 0.015 23.5 4.5 43 321-363 49-98 (271)
No 1
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=7.2e-89 Score=700.03 Aligned_cols=370 Identities=19% Similarity=0.187 Sum_probs=296.4
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHh
Q 014159 12 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 91 (429)
Q Consensus 12 ~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~ 91 (429)
.|.++|||++||++++++||+|+|||+||+|.+.. +.+.+++.++|++ ++|+|+|||+|||||||+||||+
T Consensus 18 ~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-------~~~~~~~~~~a~~--~~Sif~LGI~PyItASIImQLL~ 88 (422)
T d1rh5a_ 18 KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-------AIFEFWQTITASR--IGTLITLGIGPIVTAGIIMQLLV 88 (422)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-------SCCTTHHHHHTCC--TTBTTTTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-------cHHHHHHHHhccc--cccHHHhChHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999987653 2234566666765 88999999999999999999998
Q ss_pred ccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014159 92 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDL 171 (429)
Q Consensus 92 ~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~it~~ 171 (429)
. |+++|+++ |||+||||+|++||++|+++|++||++++..... .+.+....++++++|++|++++|||||+||||
T Consensus 89 ~--~~l~~~~~-~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~--~~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~ 163 (422)
T d1rh5a_ 89 G--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAF--GILTPLLAFLVIIQIAFGSIILIYLDEIVSKY 163 (422)
T ss_dssp H--HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--hhHHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6 89999987 8999999999999999999999999998876532 23445566778899999999999999999999
Q ss_pred cCCCchhHHHHHHHhhhchHHHHH-------HHHHHhh-cCchhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccc
Q 014159 172 KLGNGTSLLIFTSIISYLPASFGR-------TVAEAFQ-DGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTS 243 (429)
Q Consensus 172 GiGnG~SliI~~~I~~~lp~~i~~-------~~~~~~~-~~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~ 243 (429)
|+|||+|++|++||++++|+...+ ....... ..++.. +..++.+++++++++|+|++|||||+||+|+.
T Consensus 164 GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~i~i~~~vv~~~~~~~~IPv~~~~~~-- 240 (422)
T d1rh5a_ 164 GIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY-IAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK-- 240 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG-THHHHHHHHHHHHHHHHTTCEEEEECCCSSST--
T ss_pred CcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccccc--
Confidence 999999999999999999865422 1111111 122333 33456667778889999999999999998743
Q ss_pred cCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc------------hHHHHHHHhcCC--------C----C
Q 014159 244 RSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI------------AALKKAAVALNP--------G----G 299 (429)
Q Consensus 244 ~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~------------~~~~~~~~~~~~--------~----~ 299 (429)
+.++|+|+|+|++|+||+|||++++++|+++++++++ .+.+...+++++ . .
T Consensus 241 -----~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~ 315 (422)
T d1rh5a_ 241 -----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHA 315 (422)
T ss_dssp -----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHH
T ss_pred -----ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchHHHHHHHhCCcchhhccccCccch
Confidence 4688999999999999999999999999999887521 111112333322 1 1
Q ss_pred cchHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHcCCccccccCChhHH-HHHHHHHhHHHHHhHHHHHHHHHhHHHHH
Q 014159 300 SFYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKSTA-AFLKTVLSRISVLGSVFLAILAAGPAVIE 377 (429)
Q Consensus 300 ~~y~~~y~~li~~fs~~~~~i-~~~p~~iAe~Lkk~g~~IpGirpG~~T~-~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~ 377 (429)
++|.++|.++|++|++||+.+ ++||||+||||||||++|||+||||+|. +||+|+++|+|++||+|++++|++|++++
T Consensus 316 ~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~ 395 (422)
T d1rh5a_ 316 IVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG 395 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788889999999999988 6999999999999999999999999995 56999999999999999999999999876
Q ss_pred HhccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 014159 378 QTTHLTAFRGFAGTSVLILVGCATDTARKVQAEI 411 (429)
Q Consensus 378 ~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~ 411 (429)
.. +||||+||+||+++|++||+++|+
T Consensus 396 ------~~--~gGTslLI~V~v~l~~~~qi~~e~ 421 (422)
T d1rh5a_ 396 ------AL--GGGTGVLLTVSIVYRMYEQLLRER 421 (422)
T ss_dssp ------CT--TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------Hh--cchHHHHHHHHHHHHHHHHHHHhh
Confidence 33 689999999999999999999875
No 2
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=63.42 E-value=2.4 Score=33.09 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=23.9
Q ss_pred cChHHHHHHHHH------cCCccccccCChhHHHHHHHHHh
Q 014159 322 LDPDDVSEQLKR------QGASIPLVRPGKSTAAFLKTVLS 356 (429)
Q Consensus 322 ~~p~~iAe~Lkk------~g~~IpGirpG~~T~~yL~k~i~ 356 (429)
++++|+.+.+.+ ....|||+|||+.-.+-+.+...
T Consensus 19 v~~~~v~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yg 59 (117)
T d1p9ya_ 19 IAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYG 59 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhcCCCCCcCCCCccHHHHHHHHh
Confidence 445555444432 56799999999987777776654
No 3
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}
Probab=41.08 E-value=8.8 Score=30.04 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=18.4
Q ss_pred cCCccccccCChhHHHHHHHHHhH
Q 014159 334 QGASIPLVRPGKSTAAFLKTVLSR 357 (429)
Q Consensus 334 ~g~~IpGirpG~~T~~yL~k~i~r 357 (429)
....|||+|||+.-..-+++....
T Consensus 37 k~~~ipGFRkGKvP~~ii~k~~~~ 60 (129)
T d1t11a2 37 KNRRFDGFRKGKVPMKMVAKMYGK 60 (129)
T ss_dssp TTCCCTTSCSSCCCHHHHHHHHHH
T ss_pred HhCCCCCCCCCCCcHHHHHHHhhh
Confidence 378999999998877777666543
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.74 E-value=84 Score=29.20 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=30.1
Q ss_pred ccChHHHHHHHHHcCCccccccCChh-HHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHH
Q 014159 321 QLDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKTVLSRISVLGSVFLAILAAGPAVIEQ 378 (429)
Q Consensus 321 ~~~p~~iAe~Lkk~g~~IpGirpG~~-T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~ 378 (429)
|.+++|++|++++.|.-..--+|.++ -+.++++.-..+. ..|.+.|++..+++.
T Consensus 23 GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~----~iL~~aa~ls~~~~~ 77 (472)
T d1wpga4 23 GLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLV----RILLLAACISFVLAW 77 (472)
T ss_dssp CBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHH----HHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHH----HHHHHHHHHHHHHHH
Confidence 77899999999999965433333333 3344444433333 233333444444443
No 5
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=18.84 E-value=33 Score=22.25 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.3
Q ss_pred hHHhhhhhcHHHHHHHHHHHHHH
Q 014159 97 LQDLQKREGEAGRKKVLQYTRYA 119 (429)
Q Consensus 97 l~~l~~~~g~~gr~~~~~~tr~l 119 (429)
++++|+ .||.-..|++..||+|
T Consensus 13 le~Lq~-sgevp~~KL~aLqkVL 34 (50)
T d1zl8a1 13 MEHVQK-TGEVNNAKLASLQQVL 34 (50)
T ss_dssp HHHHGG-GSSSTHHHHHHHHHHH
T ss_pred HHHHHH-cCCCChHHHHHHHHHH
Confidence 567886 8998899999998876
No 6
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.45 E-value=36 Score=22.62 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.7
Q ss_pred hHHhhhhhcHHHHHHHHHHHHHHH
Q 014159 97 LQDLQKREGEAGRKKVLQYTRYAS 120 (429)
Q Consensus 97 l~~l~~~~g~~gr~~~~~~tr~lt 120 (429)
++++|+ .||.-..|++..||+|-
T Consensus 14 le~LQ~-~gevp~~KL~aLqkVLq 36 (57)
T d1y74a1 14 LERLQR-SGELPPQKLQALQRVLQ 36 (57)
T ss_dssp HHHHHH-HTCSCHHHHHHHHHHHH
T ss_pred HHHHHH-cCCCChHHHHHHHHHHH
Confidence 567886 89988999999998763
No 7
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.10 E-value=1.1e+02 Score=28.11 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=23.7
Q ss_pred HHHHHHHH---HhhhhhcccCCCchhHHHHHHHhhhchHHH
Q 014159 156 LGSAFTTY---IGERISDLKLGNGTSLLIFTSIISYLPASF 193 (429)
Q Consensus 156 aGs~~l~w---L~e~it~~GiGnG~SliI~~~I~~~lp~~i 193 (429)
.|++++.. +.|.+.. +|+|+|++|.++++-...+++
T Consensus 379 ~Ga~~l~~ia~~p~~l~~--~~gGTslLI~V~v~l~~~~qi 417 (422)
T d1rh5a_ 379 MSSAFVGFLATIANFIGA--LGGGTGVLLTVSIVYRMYEQL 417 (422)
T ss_dssp HHHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHH
Confidence 34444444 3455544 457999999999988765554
No 8
>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.94 E-value=1.3e+02 Score=24.21 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHH
Q 014159 325 DDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPA 374 (429)
Q Consensus 325 ~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~ 374 (429)
+...+.+++.|.-..+.+|.+.|+.|.+......+.=|...-++.|..|-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~p~~~~y~~~l~~~~~~~~~~~~~l~al~pc 135 (215)
T d2f2ga1 86 EWFKREGSKWDVDFSTVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAI 135 (215)
T ss_dssp HHHHHHHHHTTCCGGGCCCCHHHHHHHHHHHHTTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccHHhcccchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 34446778888999999999999999887765443334444444444453
No 9
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.76 E-value=2e+02 Score=20.37 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=37.4
Q ss_pred hhhc-CchHHHHHHHHHHH-HhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 014159 72 ICSL-GIVPFINAQIVFQL-LAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIV 126 (429)
Q Consensus 72 lfsL-GI~PyItAsIi~QL-l~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~i 126 (429)
|.++ ||+|-....|+-.= -.+-+.+++++.+ --..|.+++++..+...+-++..
T Consensus 35 L~~lpgig~~~A~~II~yR~~~G~f~sledL~~-V~Gi~~k~~eki~k~~~l~~~~~ 90 (91)
T d2edua1 35 LRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER-VEGITGKQMESFLKANILGLAAG 90 (91)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG-STTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhCCCCCHHHHHHHHHHHHHcCCCCCHHHHhc-CCCCCHHHHHHHHHcCchhhccC
Confidence 5555 88888887777333 2333567888865 44567899999999887777653
No 10
>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}
Probab=6.75 E-value=2.1e+02 Score=23.49 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=31.8
Q ss_pred ccChHHHHHHHHHcCCcccccc-------CChhHHHHHHHHHhHHHHHhH
Q 014159 321 QLDPDDVSEQLKRQGASIPLVR-------PGKSTAAFLKTVLSRISVLGS 363 (429)
Q Consensus 321 ~~~p~~iAe~Lkk~g~~IpGir-------pG~~T~~yL~k~i~r~t~~Ga 363 (429)
..+++++.+.+++.|..+.++- +.++..+.+++.+..+.-+|+
T Consensus 49 ~~~~~~~k~~l~~~gl~i~~l~~~~~~~~~~~~~~~~~~~~i~~a~~lG~ 98 (271)
T d2q02a1 49 DLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGA 98 (271)
T ss_dssp TCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHcCCcEEEeecccccCCCCHHHHHHHHHHHHHHHHcCC
Confidence 4578999999999999888874 344566777776666666554
Done!