RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014159
(429 letters)
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 396 bits (1019), Expect = e-136
Identities = 160/422 (37%), Positives = 261/422 (61%), Gaps = 15/422 (3%)
Query: 8 FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 64
+ FK L + L LG L + R+G YIP+ G++ A DQ S +L + FSG
Sbjct: 5 LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSG 64
Query: 65 GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 124
G + R I +LGI+P+I A I+ QLL + PKL++L+K EGEAGR+K+ QYTRY +V A
Sbjct: 65 GALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLA 123
Query: 125 IVQAIGQVLYLRPY-------VNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGT 177
VQ+IG L + LT V LT G+ F ++GE+I++ +GNG
Sbjct: 124 FVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGIGNGI 183
Query: 178 SLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPIN 236
SL+IF I++ LP++ G+T A + + +I+ F+ ++ +V+V++A+R+IP+
Sbjct: 184 SLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243
Query: 237 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAA-LKKAAVAL 295
YA R R +S+YLP KVN +GV+P+IF++S L P T+A+F G + L+ A L
Sbjct: 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYL 303
Query: 296 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 355
+PG Y+ LLI FF ++YT +Q +P++++E LK+ G IP +RPG+ TA +L VL
Sbjct: 304 SPGSPLYILLYALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVL 363
Query: 356 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 415
+R++++G+++LA +A P +++ + F GTS+LI+VG A DT ++++++++S++
Sbjct: 364 TRLTLVGAIYLAFIALLPEILQNALGV--PFYFGGTSLLIVVGVALDTMKQIESQLMSRQ 421
Query: 416 YK 417
Y+
Sbjct: 422 YE 423
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 345 bits (887), Expect = e-116
Identities = 166/409 (40%), Positives = 258/409 (63%), Gaps = 4/409 (0%)
Query: 16 LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSL 75
L + L LG L L RLG +IP+ G++ +L N LL+ L++FSGGG +G+ +L
Sbjct: 10 LLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFAL 69
Query: 76 GIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYL 135
GI+P+INA I+ QLL I P L+ LQK EGEAGR+K+ QYTRY ++G+AI+Q+IG +L
Sbjct: 70 GILPYINASIIIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWL 129
Query: 136 RPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGR 195
+PY+ +++ L V LT GS ++ E I++ LGNG+SLLIF +I+S LP
Sbjct: 130 KPYLFNWNLLLALEIVLALTSGSMIVLWLSELITEKGLGNGSSLLIFFNIVSNLPKLLQS 189
Query: 196 TVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLP 255
+ + + + ++ F + ++GI+++QEA RKIP+ +++ +S L ++YLP
Sbjct: 190 LLFSLSANITILSILLLLFLFFITLIGIIFLQEAIRKIPL-ISAKQLGKSSRLASNSYLP 248
Query: 256 FKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAA---VALNPGGSFYLPTNILLIAF 312
++N +GVMPIIF+++ L LPG L L + L YL +LI F
Sbjct: 249 LRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILF 308
Query: 313 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAG 372
F+Y+Y+ + L+P D+SE L++ SIP +RPGK+T +LK L+R+++LG++FLA +A
Sbjct: 309 FSYFYSTIVLNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALL 368
Query: 373 PAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEF 421
P +IE +L+ F+G TS+LILVG A DT+R++Q +IS Y+N+
Sbjct: 369 PNLIESVLNLSVFKGLGTTSLLILVGVAIDTSRQIQTYLISNNYENMYD 417
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 305 bits (783), Expect = e-100
Identities = 155/410 (37%), Positives = 246/410 (60%), Gaps = 14/410 (3%)
Query: 19 KFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIV 78
K L LG L L R+G +IP+ G++ AF + QN + L++FSGG +G++ I +LGI
Sbjct: 3 KLLFTLGLLVLFRIGTFIPIPGIDASAFQNLIQQNPIFGLLNTFSGGALGQISIFALGIS 62
Query: 79 PFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLY-LRP 137
P+I A I+ QLL P L LQK+EGE GR+K+ Q TRY ++ A +Q++G V+ +
Sbjct: 63 PYITASIIIQLLTGDVPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYG 122
Query: 138 YVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGR-- 195
YV D + L V LT GS ++GE+I+ +GNG SLLIF I + +P+ +
Sbjct: 123 YVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIGNGISLLIFAGIAATIPSGLLQPT 182
Query: 196 TVAEAFQDGNYIGLATI-----IISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQR 250
V ++ L + +I+ I++ +V+VQ+A RKIPI A R R G +
Sbjct: 183 EVRQSKVRDLISFLQNLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRRGS--Q 240
Query: 251 SAYLPFKVNSSGVMPIIFSTSSLALPGTLARF----TGIAALKKAAVALNPGGSFYLPTN 306
S YLP K+N +GV+P+IF+++ L+ P T+++F G A ++L+
Sbjct: 241 STYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPIGAILY 300
Query: 307 ILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFL 366
++LI FF+++Y LQL+P+D+++ LK+QG IP +RPGK T +LK V+ R++ +GS+FL
Sbjct: 301 LILIIFFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFL 360
Query: 367 AILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKY 416
++A P + L +G GTS+LI+VG A DT +++++E+IS+ Y
Sbjct: 361 GLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDTYKQLESELISRNY 410
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 305 bits (784), Expect = e-100
Identities = 152/428 (35%), Positives = 250/428 (58%), Gaps = 23/428 (5%)
Query: 8 FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGG 66
FK P L + L LG L + R+G +IP+ G+N A + L + FSGG
Sbjct: 10 LSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGA 69
Query: 67 IGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIV 126
+ R I +LGI+P+I A I+ QLL +P L+ L K EGE GR+K+ QYTRY ++ A++
Sbjct: 70 LSRGSIFALGIMPYITASIIMQLLTVGSPILKKLDK-EGEEGRRKIQQYTRYLTLVLAVI 128
Query: 127 QAIGQVLYLR-----PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLI 181
QA+G VL V + + L + LT G+ F ++GE+I+ +GNG SL+I
Sbjct: 129 QALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGIGNGISLII 188
Query: 182 FTSIISYLPASFGRTVAEAFQDG---NYIGLATIIISFILLVLGIVYVQEAERKIPINYA 238
F I++ LP++ + + + L +++ + ++ +VYV++A R+IPI YA
Sbjct: 189 FAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYA 248
Query: 239 SRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-------IAALKKA 291
R + R +S+YLP K+N +GV+P+IF++S L P T+A+F G ++ L
Sbjct: 249 KRQSYRG----QSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSI 304
Query: 292 AVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFL 351
+ AL+PG Y+ ++LI FF+Y+YT +Q +P++++E LK+ G IP +RPGK T +L
Sbjct: 305 SDALSPGSPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYL 364
Query: 352 KTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEI 411
V+ R++ +G++FL ++A P ++ + F GTS+LI+VG A DT +++AE+
Sbjct: 365 NRVIPRLTFIGALFLGLIAILPELLGTAGGVP--FYFGGTSLLIVVGVALDTYEQIEAEL 422
Query: 412 ISQKYKNI 419
+ +KY +
Sbjct: 423 LMEKYPGL 430
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 284 bits (729), Expect = 3e-93
Identities = 140/349 (40%), Positives = 206/349 (59%), Gaps = 23/349 (6%)
Query: 71 GICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIG 130
I +LGI P+I A I+ QLL + PKL+ L K EGE GRKK+ QYTRY ++ A++QAIG
Sbjct: 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDK-EGEEGRKKIQQYTRYLTLVLALIQAIG 59
Query: 131 QVLYLRPY-------VNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFT 183
VL L Y V +L V LT G+ F ++GE I+ +GNG SL+IF
Sbjct: 60 IVLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFA 119
Query: 184 SIISYLPASFGRTVAEAFQDG---NYIGLATIIISFILLVLGIVYVQEAERKIPINYASR 240
I++ +P + + G + + L ++++ + ++L +VY+QEA R+IPI YA R
Sbjct: 120 GIVASIPWAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKR 179
Query: 241 YTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG----IAALKKAAVALN 296
G +S+YLP K+N +GV+PIIF++S LA P T+A+F G + + A L
Sbjct: 180 VVGGGRG--QSSYLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLAYYLP 237
Query: 297 PGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLS 356
G Y+ I+LI FF+Y+YT + +P D++E LK+ G IP +RPGKST +L V+
Sbjct: 238 IGSPVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPGKSTEKYLNRVIP 297
Query: 357 RISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTAR 405
R++ +G++FL ++A P + L A GF GTS+LI VG A DT
Sbjct: 298 RLTFIGAIFLGLIAVLPDL------LGALGGFGGTSLLIAVGVALDTYE 340
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed.
Length = 434
Score = 221 bits (565), Expect = 8e-68
Identities = 139/414 (33%), Positives = 233/414 (56%), Gaps = 18/414 (4%)
Query: 19 KFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIV 78
K L L L + R+G +IP+ N E DQ ++L L+ F GG + I ++GI
Sbjct: 17 KILFTLAMLIVFRIGTFIPVPHTNAEVLKVQ-DQANVLGMLNVFGGGALQHFSIFAVGIT 75
Query: 79 PFINAQIVFQLLA-QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR- 136
P+I A I+ QLL + PK + K +GE GRKK Q+TRY ++ A +QAIG
Sbjct: 76 PYITASIIVQLLQMDVIPKFSEWAK-QGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNN 134
Query: 137 ----PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS 192
+ D S L T+LT G+AF ++GE+I+ +GNG S+LIF +++ +P
Sbjct: 135 IAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGEQITANGVGNGISMLIFAGLVAAIPNV 194
Query: 193 FGRTVAEAFQDG------NYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSG 246
+ + FQ+ + I + I + + +V+G++Y+Q+A RKIPI YA + S +
Sbjct: 195 ANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIPIQYA-KAVSGNN 253
Query: 247 GLQ--RSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR-FTGIAALKKAAVALNPGGSFYL 303
Q ++ +LP KVNS+GV+P+IF+++ L P T+A+ F + K L+ +
Sbjct: 254 QYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGM 313
Query: 304 PTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGS 363
+ LI F Y+Y F+Q++P+ ++E LK+Q +P +RPGKST ++ +L R++ +G+
Sbjct: 314 TLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGA 373
Query: 364 VFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYK 417
+FL ++ P V + L GTS+LI+VG A +T + ++++++ + YK
Sbjct: 374 IFLGAISILPLVFTKIATLPPSAQIGGTSLLIIVGVALETMKTLESQLVKRHYK 427
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2.
Members of this family are restricted to the Firmicutes
lineage (low-GC Gram-positive bacteria) and appear to be
paralogous to, and much more divergent than, the
preprotein translocase SecY. Members include the SecY2
protein of the accessory Sec system in Streptococcus
gordonii, involved in export of the highly glycosylated
platelet-binding protein GspB [Protein fate, Protein and
peptide secretion and trafficking].
Length = 395
Score = 115 bits (290), Expect = 1e-28
Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 23/348 (6%)
Query: 32 LGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 91
LG YIP+ V +NS + +GG + L I SLG+ P++ + I+ QL +
Sbjct: 18 LGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFS 77
Query: 92 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSV 151
D Q + + R++ L G AI+ + N S +L +
Sbjct: 78 FTKSDGFDAQSPKEQQYRERFLTLIIAIIQGLAIIHSF-------TNKNGLSDFNMLLAT 130
Query: 152 TLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLAT 211
+L G+ ++ + + +G G+ ++ S++ +P V E FQ YI L
Sbjct: 131 LILVTGTCLLVWLADLNAKYGIG-GSMPIVLVSMLKNIP----SNVFELFQMS-YIWLIA 184
Query: 212 IIISFILLVLGIV-YVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFST 270
++I L+ L ++ +++ AE +IP+N S + +YLP K+N +G M ++
Sbjct: 185 LLILLTLVALFLLAFIERAEYRIPVNDISLHNR----SNLMSYLPIKLNPAGGMMYMYVM 240
Query: 271 SSLALPGTLARFTGIAALKKAAVA-LNPGGSFYLPTNI----LLIAFFNYYYTFLQLDPD 325
S L LP + G + + SF P I +L +Y++TF+ ++P
Sbjct: 241 SLLMLPQYIIILLGRIFPNSSLINNWVFQFSFSSPVGILIYLILQMLLSYFFTFVNINPK 300
Query: 326 DVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGP 373
++S+ ++ G IP + PGK T +L + R G VF A P
Sbjct: 301 EISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIP 348
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 107 bits (269), Expect = 1e-25
Identities = 93/425 (21%), Positives = 182/425 (42%), Gaps = 44/425 (10%)
Query: 10 DFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGR 69
F + K L L + LG I + V+ +G S L + +GG +
Sbjct: 6 KFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGG--HESFLKIAAANTGGDLRT 63
Query: 70 LGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAI 129
L I SLG+ P++ + I+ QL + Q E + R+++L ++ A++Q++
Sbjct: 64 LNIFSLGLGPWMTSMIILQLFSYRKRDGLMKQTIEEQHYRERIL------TLIIAVIQSL 117
Query: 130 GQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYL 189
+L L P S +L + +L G+ F ++ + + +G G ++ S+I +
Sbjct: 118 AVILSL-PSKERISQTNILLNTLILVTGTMFLVWLSDLNARYGIG-GPMPIVLVSMIKSI 175
Query: 190 PASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYV----QEAERKIPINYASRYTSRS 245
P + V E +II ILLV+ ++ + E +IP N +
Sbjct: 176 P----QDVIEYID-----ASHIVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNRF- 225
Query: 246 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPT 305
+ +YL K+N +G MPI++S S L P + I ++ ++
Sbjct: 226 ---KMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIIL--ILSIFPNNSGISADMDMLSFG 280
Query: 306 N-------ILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRI 358
+ ++L +Y+++F+ ++ +++ + + G IP V PGK T +L + R
Sbjct: 281 SPLGVTVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRF 340
Query: 359 SVLGSVFLAILAAGPA----VIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQ 414
S G++F+ ++A P + F G ++ VG + + A +++A +
Sbjct: 341 SWFGALFVTVIAGIPLYFTLFDPHLSTEIYFSG----QFMMFVGMSFNIADEIRALLYFD 396
Query: 415 KYKNI 419
KYK +
Sbjct: 397 KYKPL 401
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 51.4 bits (124), Expect = 5e-07
Identities = 89/409 (21%), Positives = 146/409 (35%), Gaps = 89/409 (21%)
Query: 23 LLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFIN 82
L+ Y L+ IPL G+++ + D LL G G + LGI P +
Sbjct: 37 LILYFILT----NIPLYGISQSS----QDLFELLRI---IFAGSFG--TLLQLGIGPIVT 83
Query: 83 AQIVFQLLAQINPKLQDLQKREGEA---GRKKVLQYTRYASVGFAIVQAIGQVL---YLR 136
A I+ QLL DL E A G +K+L ++ ++A VL +
Sbjct: 84 AGIILQLLVGSKLINLDLSDPEDRALFQGLQKLL------AIVMIALEAAPFVLAGAFGP 137
Query: 137 PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLI--------FTSIISY 188
+ L L LG + E +S +G+G SL I F + ++
Sbjct: 138 ATGLASTPLLALLIFLQLFLGGILIILLDELVSKWGIGSGISLFILAGVSQTIFVGLFNW 197
Query: 189 LPASFGRTV------AEAFQDGNYIGLATI---------IISFILLVLGIVYVQEAERKI 233
L G V A GN + +I+ I++ L +VY++ +I
Sbjct: 198 LTGGQGLPVGFIPALFSAITSGNLTLALLLTTRGLLLLGLITTIVIFLIVVYLESMRVEI 257
Query: 234 PINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFST---SSLALPGTLARFTGIAALKK 290
P+++ +R P K V+P+I +++ L G L + GI L
Sbjct: 258 PLSHGRVRGARG-------RYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLGIPILGT 310
Query: 291 --AAVALNPGGSFYLPTNILLIAFFNY-------YYTFL---------------QLDPDD 326
++ A G Y + + Y F+ LDP
Sbjct: 311 YDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKT 370
Query: 327 VSEQLKRQGASIPLVRPGKSTAAFLKTVLSR----ISVLGSVFLAILAA 371
+ QL+ G IP R ++ VL R ++V+G + +LA
Sbjct: 371 QARQLQNSGMQIPGFR---RNPKVIEKVLERYIPPVTVIGGAIVGLLAV 416
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 32.4 bits (74), Expect = 0.45
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 291 AAVALNPG--GSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQL 331
A AL G +F +P N L F+ + L+ DP+D SEQL
Sbjct: 508 ATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQL 550
>gnl|CDD|212118 cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins
from bacteria. This subfamily contains many
hypothetical proteins, and belongs to the YdjC-like
family of uncharacterized proteins from bacteria. The
YdjC-family is represented by an uncharacterised protein
YdjC (also known as ChbG) encoded by the chb
(N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel
operon in Escherichia coli, which encodes enzymes
involved in growth on an N,N'-diacetylchitobiose carbon
source. The molecular function of this subfamily is
unclear.
Length = 251
Score = 30.7 bits (70), Expect = 1.2
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 332 KRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAG 390
+R P +R STA L L +L ++ LA L AG + RGFAG
Sbjct: 138 RRYPGGRPWLR---STAEPLPAGLPLAGLLKALVLAALGAGALRRLARAGIPTNRGFAG 193
>gnl|CDD|238841 cd01684, Tet_like_IV, EF-G_domain IV_RPP domain is a part of
bacterial ribosomal protected proteins (RPP) family.
RPPs such as tetracycline resistance proteins Tet(M) and
Tet(O) mediate tetracycline resistance in both
gram-positive and -negative species. Tetracyclines
inhibit the accommodation of aminoacyl-tRNA into
ribosomal A site and therefore prevent the addition of
new amino acids to the growing polypeptide. RPPs Tet(M)
confer tetracycline resistance by releasing tetracycline
from the ribosome and thereby freeing the ribosome from
inhibitory effects of the drug, such that aa-tRNA can
bind to the A site and protein synthesis can continue.
Length = 115
Score = 28.0 bits (63), Expect = 4.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 164 IGERISDLKLGNGTSLLIFTSIIS--YLPASFGRTVAEAFQDGNYIGL 209
+G R+ L G+G L + S +S LP SF V E ++ GL
Sbjct: 28 VGLRVEPLPRGSG---LQYESEVSLGSLPRSFQNAVEETVRETLQQGL 72
>gnl|CDD|183206 PRK11569, PRK11569, transcriptional repressor IclR; Provisional.
Length = 274
Score = 29.0 bits (65), Expect = 4.6
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 21 LKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGG----IGRLGICSLG 76
LKLL ++A S + L + ++A + N + LL+T+ G +G LG ++G
Sbjct: 31 LKLLEWIAESNGSV--ALTELAQQAGLPNSTTHRLLTTMQQQ---GFVRQVGELGHWAIG 85
Query: 77 IVPFINAQIVFQ---LLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQ 127
FI Q LLA ++P L++L + GE VL + + ++ VQ
Sbjct: 86 AHAFIVGSSFLQSRNLLAIVHPILRNLMEDSGETVNLAVLDQSDHQAIIIDQVQ 139
>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase.
Length = 436
Score = 28.4 bits (63), Expect = 8.9
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 28 ALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGG--------GIGR--LGICSLGI 77
+LSRLG + R + D ST +S GG GIGR L I G
Sbjct: 69 SLSRLGPAESTSLITRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLRIVVTGG 128
Query: 78 VPFINAQIVFQLLAQ 92
F+ + +V +L+ +
Sbjct: 129 AGFVGSHLVDKLIGR 143
>gnl|CDD|237353 PRK13331, PRK13331, pantothenate kinase; Reviewed.
Length = 251
Score = 28.1 bits (63), Expect = 9.3
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 173 LGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFI 217
L + T+ L + LP + EA Q G + + FI
Sbjct: 151 LADKTAALPQVELPPPLPPRWATNTQEAIQSGVIYTILAGLRDFI 195
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.399
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,457,842
Number of extensions: 2278619
Number of successful extensions: 2689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2628
Number of HSP's successfully gapped: 90
Length of query: 429
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 329
Effective length of database: 6,502,202
Effective search space: 2139224458
Effective search space used: 2139224458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)