RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 014159
         (429 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  190 bits (485), Expect = 8e-57
 Identities = 67/431 (15%), Positives = 133/431 (30%), Gaps = 62/431 (14%)

Query: 13  KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGI 72
           +     K       L L  +   I +     +         ++     + +        +
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-------PAIFEFWQTITASR--IGTL 69

Query: 73  CSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV 132
            +LGI P + A I+ QLL      +  +        R       +  S+    V+A+  V
Sbjct: 70  ITLGIGPIVTAGIIMQLLVG--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFV 126

Query: 133 LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS 192
                 +      +++  +  +  GS    Y+ E +S   +G+G  L I   +   +   
Sbjct: 127 GAGAFGILTPLLAFLV--IIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVG 184

Query: 193 -------FGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRS 245
                    + +    Q    I     II  I++ L +VY +    +IP+ +        
Sbjct: 185 ALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK---- 240

Query: 246 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR------------FTGIAALKKAAV 293
                    P K      +P+I + +  A                   + G  A+   A 
Sbjct: 241 ---GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY 297

Query: 294 ALNPGGSFYLPTNILL-------------IAFFNYYYTFLQLDPDDVSEQLKRQGASIPL 340
            L+         +  +             + F  ++     LDP  +++++   G +I  
Sbjct: 298 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKG 357

Query: 341 VRPGKSTAA-FLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGC 399
            R  +      LK  +  ++V+ S F+  LA     I             GT VL+ V  
Sbjct: 358 FRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGAL--------GGGTGVLLTVSI 409

Query: 400 ATDTARKVQAE 410
                 ++  E
Sbjct: 410 VYRMYEQLLRE 420


>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score = 26.7 bits (59), Expect = 2.6
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 219 LVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPII 267
           L        E   K+      R+ SR+GG  R     F+   +  M  I
Sbjct: 65  LAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYI 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,521,758
Number of extensions: 70093
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 2
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)