Query 014160
Match_columns 429
No_of_seqs 150 out of 1068
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 1E-106 4E-111 832.2 42.1 410 8-419 5-427 (434)
2 3dl8_G Preprotein translocase 100.0 1E-107 5E-112 839.4 20.1 410 8-419 5-426 (429)
3 3din_C Preprotein translocase 100.0 6E-106 2E-110 827.4 20.7 403 8-419 5-421 (431)
4 3j01_A Preprotein translocase 100.0 6E-106 2E-110 828.0 17.3 404 13-419 9-425 (435)
5 1rh5_A Preprotein translocase 100.0 9.7E-96 3E-100 752.3 27.4 383 12-424 19-436 (436)
6 3mp7_A Preprotein translocase 100.0 6.1E-95 2.1E-99 753.9 13.0 384 12-425 22-469 (482)
7 2ww9_A SEC sixty-one protein h 100.0 1.2E-90 4.2E-95 722.9 23.5 375 13-416 26-476 (490)
8 2wwb_A Protein transport prote 100.0 6.8E-87 2.3E-91 693.2 30.9 370 12-412 24-466 (476)
9 2nsc_A Trigger factor, TF; cha 60.2 5.7 0.00019 32.3 3.0 23 334-356 37-59 (109)
10 1p9y_A Trigger factor, TF; alp 52.6 9 0.00031 31.8 3.0 23 335-357 41-63 (121)
11 2d3o_1 Trigger factor, TF; rib 44.2 7.3 0.00025 31.8 1.2 27 329-356 32-58 (112)
12 1t11_A Trigger factor, TF; hel 25.3 43 0.0015 33.3 3.4 23 334-356 40-62 (392)
13 1w26_A Trigger factor, TF; cha 21.2 51 0.0017 33.2 3.0 22 335-356 38-59 (432)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=1.2e-106 Score=832.20 Aligned_cols=410 Identities=32% Similarity=0.527 Sum_probs=355.1
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhccc--chhHHHHHhhcCCCCccchhhhcCchHHHHHH
Q 014160 8 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 84 (429)
Q Consensus 8 ~~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~--~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAs 84 (429)
++|+|| +|+|+|++||++++++||+|+|||+||+|.++.++.+++ +++++++|+|+||+++|+|+|||||+||||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS 84 (434)
T 2zjs_Y 5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA 84 (434)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence 457776 599999999999999999999999999999988764332 46889999999999999999999999999999
Q ss_pred HHHHHHhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c-cc----cc--cchhHHHHHHHHHHH
Q 014160 85 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-P-YV----ND--FSTDWVLTSVTLLTL 156 (429)
Q Consensus 85 Ii~QLl~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~-~-~~----~~--~~~~~~~~~vl~L~a 156 (429)
|+||||+.++|.++|++| |||+||||+|++|||+|+++|++||++++.+++ . ++ .+ ++..+.++++++|++
T Consensus 85 II~QLL~~vip~l~~l~k-eGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a 163 (434)
T 2zjs_Y 85 IIMQILVTVVPALEKLSK-EGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434)
T ss_dssp HHHHHHHHHSHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence 999999988999999986 999999999999999999999999999998763 2 12 23 444466788999999
Q ss_pred HHHHHHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHHHHhhhccEEeeee
Q 014160 157 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPI 235 (429)
Q Consensus 157 Gs~~l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi 235 (429)
||+++|||||+|||||+|||+|++|++||++++|+.+.+.++....+ .++..++..+++++++++++||+|++||||||
T Consensus 164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~vV~~~~~~rrIPv 243 (434)
T 2zjs_Y 164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV 243 (434)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHheeeEEEEee
Confidence 99999999999999999999999999999999999988777533221 14444445566778888999999999999999
Q ss_pred eecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhc-chHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 014160 236 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-IAALKKAAVALNPGGSFYLPTNILLIAFFN 314 (429)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~-~~~~~~~~~~~~~~~~~y~~~y~~li~~fs 314 (429)
||+||.+||+.++++++|+|+|+|+|||||+|||+|++++|++++++++ ++|.+...++++|++|+|.++|++++++||
T Consensus 244 qyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs 323 (434)
T 2zjs_Y 244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVILFT 323 (434)
T ss_dssp EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 9999999999888999999999999999999999999999999999764 456666777889999999999999999999
Q ss_pred HHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhH
Q 014160 315 YYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVL 394 (429)
Q Consensus 315 ~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslL 394 (429)
|||+++++||||+||||||||+||||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+. .++||||+|
T Consensus 324 ~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~-~~~gGTslL 402 (434)
T 2zjs_Y 324 YVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHS-IAFSGIGLL 402 (434)
T ss_dssp HHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC-GGGSSHHHH
T ss_pred HHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccc-ccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865434422 237999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCe
Q 014160 395 ILVGCATDTARKVQAEIISQKYKNI 419 (429)
Q Consensus 395 I~V~v~~~~~~qi~~~~~~~~Y~~~ 419 (429)
|+|||++|++||+|+++.+|+|+++
T Consensus 403 I~VgV~ldt~~qi~s~~~~~~Y~~~ 427 (434)
T 2zjs_Y 403 IVVGVALDTLRQVESQLMLRSYEGF 427 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=1.5e-107 Score=839.39 Aligned_cols=410 Identities=38% Similarity=0.652 Sum_probs=353.4
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcc--cchhHHHHHhhcCCCCccchhhhcCchHHHHHH
Q 014160 8 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 84 (429)
Q Consensus 8 ~~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~--~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAs 84 (429)
++|+|| +|+|||++||++++++||+|+|||+||+|.++.++.++ +++.++++|+++||+++|+|+|||||+||||||
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItAs 84 (429)
T 3dl8_G 5 LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISAS 84 (429)
T ss_dssp ---CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHHH
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHHH
Confidence 678885 69999999999999999999999999999988765332 246788999999999999999999999999999
Q ss_pred HHHHHHhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc--------ccccchhHHHHHHHHHHH
Q 014160 85 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY--------VNDFSTDWVLTSVTLLTL 156 (429)
Q Consensus 85 Ii~QLl~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~--------~~~~~~~~~~~~vl~L~a 156 (429)
|+||||+.++|+++|++|||||+||||+|++|||+|+++|++||.+++.+++.. ..+++..+.++++++|++
T Consensus 85 II~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~a 164 (429)
T 3dl8_G 85 IMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVA 164 (429)
T ss_dssp HHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHH
Confidence 999999998999999997699999999999999999999999999998776431 123455567888999999
Q ss_pred HHHHHHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHHHhhhccEEeeee
Q 014160 157 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGNYIGLATIIISFILLVLGIVYVQEAERKIPI 235 (429)
Q Consensus 157 Gs~~l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi 235 (429)
|++++|||||+|||||+|||+|++|++||++++|+.+.+.++... .+.++...+..+++++++++++||+|++|||||+
T Consensus 165 Gt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~g~~~~~~~l~~l~~~l~vi~~vV~~~~~~rrIPv 244 (429)
T 3dl8_G 165 GTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRIPI 244 (429)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHHHHHHHHHHHHHHHHTCSCCCCCCCCC
T ss_pred HHHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHheeeEEEEEE
Confidence 999999999999999999999999999999999987654321110 0112333445567778888999999999999999
Q ss_pred eecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcchHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 014160 236 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNY 315 (429)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~y~~~y~~li~~fs~ 315 (429)
||+||..|||.++++++|+|+|+||||+||+|||+|++++|++++++++++|.+...++++|++++|.++|+++|++|||
T Consensus 245 qyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs~ 324 (429)
T 3dl8_G 245 QYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFLYVTFIVFFTY 324 (429)
T ss_dssp BCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred EEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999999999999999999999998755555445566788889999999999999999
Q ss_pred HHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHH
Q 014160 316 YYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLI 395 (429)
Q Consensus 316 ~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI 395 (429)
||+++++||||+||||||||+||||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+. .+||||+||
T Consensus 325 fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~--~~gGTslLI 402 (429)
T 3dl8_G 325 FYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWFNIPF--YFGGTTALI 402 (429)
T ss_dssp HHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSC--CCSTHHHHH
T ss_pred HHHHHccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCc--cccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999876555542 379999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCe
Q 014160 396 LVGCATDTARKVQAEIISQKYKNI 419 (429)
Q Consensus 396 ~V~v~~~~~~qi~~~~~~~~Y~~~ 419 (429)
+||+++|++||+|+++.+|||+++
T Consensus 403 ~Vgv~l~~~~qi~s~l~~~~Y~g~ 426 (429)
T 3dl8_G 403 VVGVALDTFRQIETYLIQKKYKSY 426 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997
No 3
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=5.6e-106 Score=827.35 Aligned_cols=403 Identities=33% Similarity=0.598 Sum_probs=349.3
Q ss_pred hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcc-----c--chhHHHHHhhcCCCCccchhhhcCchH
Q 014160 8 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD-----Q--NSLLSTLDSFSGGGIGRLGICSLGIVP 79 (429)
Q Consensus 8 ~~~~~~-~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~-----~--~~~l~~~~~~sGg~~~~~SlfsLGI~P 79 (429)
++|+|| +|+|+|++||++++++||+|+|||+||+|.+++++.++ + ++.++++|+++||+++|+|+|||||+|
T Consensus 5 ~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~P 84 (431)
T 3din_C 5 FKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVTP 84 (431)
T ss_dssp ---CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHHH
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhHH
Confidence 677786 69999999999999999999999999999988755332 2 468889999999999999999999999
Q ss_pred HHHHHHHHHHHhccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-----cccc-hhHHHHHHHH
Q 014160 80 FINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYV-----NDFS-TDWVLTSVTL 153 (429)
Q Consensus 80 yItAsIi~QLl~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~-----~~~~-~~~~~~~vl~ 153 (429)
||||||+||||+.++|+++|++| |||+||||+|++|||+|+++|++||.+++.+++... .+.+ ..+.++++++
T Consensus 85 yItAsII~QLL~~~iP~l~~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 163 (431)
T 3din_C 85 YITASIILQLLASVMPSLKEMLR-EGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMS 163 (431)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCSC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHHH
Confidence 99999999999998999999997 999999999999999999999999999987763210 2334 5567888999
Q ss_pred HHHHHHHHHHHhhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHhhhccEEee
Q 014160 154 LTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKI 233 (429)
Q Consensus 154 L~aGs~~l~wL~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~rI 233 (429)
|++|++++|||||+|||||+|||+|++|++||++++|+.+.+.++ .+.++...+..+++++++++++||+|++||||
T Consensus 164 L~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~---~~~~~~~~l~~l~~~l~vi~~vV~~~~~~rrI 240 (431)
T 3din_C 164 MLAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL---GGLNLLEWIFLIAVALITIFGIILVQQAERRI 240 (431)
T ss_dssp HHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS---CCSCTHHHHHHHHHHHHHHHHHTTTCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHhheeeEEEE
Confidence 999999999999999999999999999999999999987654321 12233334455677788889999999999999
Q ss_pred eeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcchHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 014160 234 PINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFF 313 (429)
Q Consensus 234 Pi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~y~~~y~~li~~f 313 (429)
|+||+||..|||.++++++|+|+|+||||+||+|||+|++++|+++++++++.| ..++++|++++|.++|+++|++|
T Consensus 241 Pvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~---~~~~~~~~~~~y~~~y~~lii~F 317 (431)
T 3din_C 241 TIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNET---LKNLFRAGGFLYLLIYGLLVFFF 317 (431)
T ss_dssp CCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCC---CCCCSSTTHHHHHHHHHHHHHHH
T ss_pred EEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcchHH---HHHHcCCCcHHHHHHHHHHHHHH
Confidence 999999999999888999999999999999999999999999999998864333 23356788899999999999999
Q ss_pred HHHHHHhccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhh
Q 014160 314 NYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSV 393 (429)
Q Consensus 314 s~~~~~i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtsl 393 (429)
||||+++++||||+||||||||+||||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+ ..+||||+
T Consensus 318 s~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~--~~~gGTsl 395 (431)
T 3din_C 318 TYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVN--VWIGGTSA 395 (431)
T ss_dssp HHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCS--CCTTHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCC--ccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999987655654 23799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCe
Q 014160 394 LILVGCATDTARKVQAEIISQKYKNI 419 (429)
Q Consensus 394 LI~V~v~~~~~~qi~~~~~~~~Y~~~ 419 (429)
||+||+++|++||+|+++.+|||+++
T Consensus 396 LI~Vgv~l~~~~qi~s~~~~~~Y~g~ 421 (431)
T 3din_C 396 LIAVGVALDIIQQMETHMVMRHYEGF 421 (431)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999998
No 4
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=5.9e-106 Score=828.03 Aligned_cols=404 Identities=33% Similarity=0.620 Sum_probs=357.4
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcc--cchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHH
Q 014160 13 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLL 90 (429)
Q Consensus 13 ~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~--~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl 90 (429)
++|+|+|++||++++++||+|+|||+||+|.++.++..+ ++++++++|+|+||+++|+|+|||||+|||||||+||||
T Consensus 9 ~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QLL 88 (435)
T 3j01_A 9 LGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLL 88 (435)
T ss_dssp SCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHHH
Confidence 379999999999999999999999999999987765433 236888999999999999999999999999999999999
Q ss_pred hccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc------ccccchhHHHHHHHHHHHHHHHHHHH
Q 014160 91 AQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY------VNDFSTDWVLTSVTLLTLGSAFTTYI 164 (429)
Q Consensus 91 ~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~------~~~~~~~~~~~~vl~L~aGs~~l~wL 164 (429)
+.++|+++|++| |||+||||+|++|||+|+++|++||.+++.+++.. ..+.+..+.++++++|++|++++|||
T Consensus 89 ~~~ip~l~~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL 167 (435)
T 3j01_A 89 TVVHPTLAEIKK-EGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWL 167 (435)
T ss_dssp HHHCSSSSSCSC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998999999997 89999999999999999999999999998776421 12334445677889999999999999
Q ss_pred hhhhhcccCCCchhHHHHHHHhhhchHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccc
Q 014160 165 GERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTS 243 (429)
Q Consensus 165 ~e~it~~GiGnG~SliI~~~I~~~lp~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~ 243 (429)
||+|||||+|||+|++|++||++++|+++.+.++... ...++..++..+++++++++++||+|++||||||||+||.+|
T Consensus 168 ~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~g 247 (435)
T 3j01_A 168 GEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQG 247 (435)
T ss_dssp HHHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSSSSTTSSSHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCSS
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhheeEEEEEEEehhhhcc
Confidence 9999999999999999999999999987654332110 112334444556777788899999999999999999999999
Q ss_pred cCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc----hHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHH
Q 014160 244 RSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI----AALKKAAVALNPGGSFYLPTNILLIAFFNYYYTF 319 (429)
Q Consensus 244 ~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~----~~~~~~~~~~~~~~~~y~~~y~~li~~fs~~~~~ 319 (429)
|+.++++++|+|+|+|||||||+|||+|++++|+++++++++ .|.+...++++|++|+|.++|++++++|+|||++
T Consensus 248 ~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~lii~F~~fyt~ 327 (435)
T 3j01_A 248 RRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA 327 (435)
T ss_dssp CCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSCCCSSCCSSSSCCCCSSGGGGTHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999889999999999999999999999999999999997642 2443344567888899999999999999999999
Q ss_pred hccChHHHHHHHHHcCCccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHH
Q 014160 320 LQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGC 399 (429)
Q Consensus 320 i~~~p~~iAe~Lkk~g~~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v 399 (429)
+++||||+||||||||+||||+|||++|+|||+|+++|+|++||+|++++|++|++++...+.+. .+||||+||+|||
T Consensus 328 i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~~~~~--~~gGTslLI~VgV 405 (435)
T 3j01_A 328 LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPF--YFGGTSLLIVVVV 405 (435)
T ss_dssp HSSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCCSSSS--SSCCHHHHHTHHH
T ss_pred HccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCe--ecccHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876555542 2799999999999
Q ss_pred HHHHHHHHHHHHHHccCCCe
Q 014160 400 ATDTARKVQAEIISQKYKNI 419 (429)
Q Consensus 400 ~~~~~~qi~~~~~~~~Y~~~ 419 (429)
++|++||+|+++.+|||+++
T Consensus 406 ~ldt~~qi~s~l~~~~Y~g~ 425 (435)
T 3j01_A 406 IMDFMAQVQTLMMSSQYESA 425 (435)
T ss_dssp HHHHHHHHHHHTSCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=9.7e-96 Score=752.32 Aligned_cols=383 Identities=19% Similarity=0.197 Sum_probs=304.7
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHh
Q 014160 12 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 91 (429)
Q Consensus 12 ~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~ 91 (429)
.++|+|+|++||++++++||+|+|||+||+|.++. +.++++|+++| ++|+|+|+|||+|||||||+||||+
T Consensus 19 ~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~-------~~~~~~~~~~a--~~~~sifaLGI~PyItAsII~QLL~ 89 (436)
T 1rh5_A 19 KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-------AIFEFWQTITA--SRIGTLITLGIGPIVTAGIIMQLLV 89 (436)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-------SCCTTHHHHHT--CCTTBTTTTTTHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-------HHHHHHHHhhc--cccchHHHHccHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999998643 24456788875 5699999999999999999999997
Q ss_pred ccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 014160 92 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDL 171 (429)
Q Consensus 92 ~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~it~~ 171 (429)
+ .++.+++| |||+||||+|++|||+|+++|++||++++.+. .+ .+.+..+.++++++|++|++++|||||+||||
T Consensus 90 g--~~~i~l~k-ege~gr~ki~~~tR~lti~la~iQa~~~~~~g-~~-~~~~~~~~~~~vl~L~~Gt~~lmwL~E~It~~ 164 (436)
T 1rh5_A 90 G--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAG-AF-GILTPLLAFLVIIQIAFGSIILIYLDEIVSKY 164 (436)
T ss_dssp H--HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--Cceeeecc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 23347776 99999999999999999999999999999873 22 23455567788999999999999999999999
Q ss_pred cCCCchhHHHHHHHhhhchHHHHH-------HHHHHhhc-CchhHHHHHHHHHHHHHHHHHhhhccEEeeeeeecccccc
Q 014160 172 KLGNGTSLLIFTSIISYLPASFGR-------TVAEAFQD-GNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTS 243 (429)
Q Consensus 172 GiGnG~SliI~~~I~~~lp~~i~~-------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~ 243 (429)
|+|||+|++|++||++++|+.+.+ .++..... .+... +..+++++++++++||+|++|||||+||+| .+
T Consensus 165 GiGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~~~~~~~~~~-l~~l~~~l~v~~~vV~~~~~~rrIPvqyak-~~- 241 (436)
T 1rh5_A 165 GIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEY-IAPIIGTIIVFLMVVYAECMRVEIPLAHGR-IK- 241 (436)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGG-THHHHHHHHHHHHHHHHTTCEEEEECCCSS-ST-
T ss_pred CcccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHhhcceEEEEEEEecc-cC-
Confidence 999999999999999999998766 55433211 23333 345566778888999999999999999997 43
Q ss_pred cCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc---hHHHH---------HHHhcC-----------CCC-
Q 014160 244 RSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AALKK---------AAVALN-----------PGG- 299 (429)
Q Consensus 244 ~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~---~~~~~---------~~~~~~-----------~~~- 299 (429)
++++|+|+|+||+||||+|||+|++++|++++++.++ +|.+. ..++++ |.+
T Consensus 242 -----g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~g~~~~~~~~~gl~yyl~pp~~~~~~~~~p~~~ 316 (436)
T 1rh5_A 242 -----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHA 316 (436)
T ss_dssp -----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHH
T ss_pred -----CccceeeeecccccchHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccccccchhhcCChhHHHHHHhCCccc
Confidence 6899999999999999999999999999999987631 23211 112232 223
Q ss_pred cchHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHcCCccccccCChh-HHHHHHHHHhHHHHHhHHHHHHHHHhHHHHH
Q 014160 300 SFYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKS-TAAFLKTVLSRISVLGSVFLAILAAGPAVIE 377 (429)
Q Consensus 300 ~~y~~~y~~li~~fs~~~~~i-~~~p~~iAe~Lkk~g~~IpGirpG~~-T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~ 377 (429)
++|.++|+++|++|+|||+++ ++||||+||||||||++|||+|||++ |+|||+|+++|+|++||+|++++|++|++++
T Consensus 317 ~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~ 396 (436)
T 1rh5_A 317 IVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG 396 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999 89999999999999999999999999 7999999999999999999999999999865
Q ss_pred HhccccccccccchhhHHHHHHHHHHHHHHHHHHHHccCCCee-eecc
Q 014160 378 QTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE-FYDI 424 (429)
Q Consensus 378 ~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~~~~~Y~~~~-~~~~ 424 (429)
.. .||||+||+||+++|++||+++++.+|+|+-+| |.|+
T Consensus 397 ------~~--~gGTslLI~VgV~~~~~~qi~~~~~~~~Y~~l~~~~g~ 436 (436)
T 1rh5_A 397 ------AL--GGGTGVLLTVSIVYRMYEQLLRERTSELHPAIAKLLNK 436 (436)
T ss_dssp ------CT--TCSHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred ------Hh--cCchhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHccC
Confidence 12 389999999999999999999999999999775 7764
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=6.1e-95 Score=753.91 Aligned_cols=384 Identities=21% Similarity=0.289 Sum_probs=277.8
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHh
Q 014160 12 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA 91 (429)
Q Consensus 12 ~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~ 91 (429)
.++++|+|++||++++++||+|+|||+||+|.+. .+.++++|+++||+ |+|+|+|||+|||||||+||||+
T Consensus 22 ~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~-------~~~~~~l~~~~Gg~--~~SifaLGI~PyITASII~QLL~ 92 (482)
T 3mp7_A 22 RRVPLRERFMWTGVALILYYVLAEIPVYGIPERI-------QDYFQFLRVVLAGR--NGSILTLGIGPIVTAGIILQLLV 92 (482)
T ss_dssp ----CTTTHHHHHHHHHHHHHHHHSBCTTCCSSC-------CCSCSSTTTTTCSC--TTBTTSSTTHHHHHHHHHTTC--
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhCCCCCcCccc-------ccHHHHHHHhcCCC--cccHHHHhhHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999863 24567889999995 99999999999999999999999
Q ss_pred ccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---cchhHHHHHHHHHHHHHHHHHHHhhhh
Q 014160 92 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVND---FSTDWVLTSVTLLTLGSAFTTYIGERI 168 (429)
Q Consensus 92 ~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~---~~~~~~~~~vl~L~aGs~~l~wL~e~i 168 (429)
. ++++|++| |||+||||+|++|||+|+++|++||.+++.++. ++.. .+..+.++++++|++|++++|||||+|
T Consensus 93 ~--~~l~~l~k-ege~gR~k~~~~tR~lti~la~iQa~~~v~~~~-~~~~~~~~~~~~~~~ivl~L~aGt~~lmwL~E~I 168 (482)
T 3mp7_A 93 G--SEIIKLDL-ANPEDRRFYQALQRVFSVFMCFFEAAVWILGGA-FGRVGVDVTYAIAVLMILQLAMGGIVLIILDELV 168 (482)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHSSS-SSCC------CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--ccHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 58999987 899999999999999999999999999998763 2211 233456788999999999999999999
Q ss_pred hcccCCCchhHHHHHHHhhhchHHHHHHHH-------------------H---HhhcCc--------hh--HHHHHHHHH
Q 014160 169 SDLKLGNGTSLLIFTSIISYLPASFGRTVA-------------------E---AFQDGN--------YI--GLATIIISF 216 (429)
Q Consensus 169 t~~GiGnG~SliI~~~I~~~lp~~i~~~~~-------------------~---~~~~~~--------~~--~~~~~~~~~ 216 (429)
||||+|||+|++|++||++++|+.+.+.++ . ...++. .| + ++.++++
T Consensus 169 t~~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~l~~~~~~~lp~~~-l~~l~~~ 247 (482)
T 3mp7_A 169 SKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAPD-MLSVVAT 247 (482)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSCSSCCCSSSSCC-HHHHHHH
T ss_pred hhcCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhcchhhHHHhhccchhH-HHHHHHH
Confidence 999999999999999999999987543210 0 000010 11 1 3445677
Q ss_pred HHHHHHHHhhhccEEeeeeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhhcc---hHHHH---
Q 014160 217 ILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---AALKK--- 290 (429)
Q Consensus 217 l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~---~~~~~--- 290 (429)
+++++++||+|++|||||+||+| .+ +++|+|+|+|||||||+|||+|++++|+++++++++ +|+..
T Consensus 248 l~v~~~vV~~q~~~rrIPvqyak-~~-------~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~l~~~~~ 319 (482)
T 3mp7_A 248 IVVFFIVVYFESMRVEIPLGYRG-VT-------VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLGRFDP 319 (482)
T ss_dssp HHHHHHHHHHHHCCEEC--------------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTTSCCSSBCCCC
T ss_pred HHHHHHhheeEeeEEEEEEEecc-cc-------ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhccchhhhhhcc
Confidence 78889999999999999999987 32 589999999999999999999999999999987532 12211
Q ss_pred --------HHHhcCCC--------Cc----chHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHcCCccccccCChh-HH
Q 014160 291 --------AAVALNPG--------GS----FYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKS-TA 348 (429)
Q Consensus 291 --------~~~~~~~~--------~~----~y~~~y~~li~~fs~~~~~i-~~~p~~iAe~Lkk~g~~IpGirpG~~-T~ 348 (429)
..++++|. +| +|.++|+++|++|||||+++ ++||||+||||||||++|||+||||+ |+
T Consensus 320 ~~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nlkk~G~~IpGiRpG~~tt~ 399 (482)
T 3mp7_A 320 TTGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLE 399 (482)
T ss_dssp TTSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--------CCTTTTTTSTTC
T ss_pred cccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCcCCCchhHH
Confidence 12344432 23 48889999999999999999 99999999999999999999999997 79
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHccCCCee-eeccC
Q 014160 349 AFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIE-FYDID 425 (429)
Q Consensus 349 ~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~~~~~Y~~~~-~~~~~ 425 (429)
|||+|+++|+|++||+|++++|++|++++ .. .||||+||+||+++|++||+++++.+|+|+.+| +.++.
T Consensus 400 ~yL~~vi~rit~~Ga~~L~~iavlp~~l~------~~--ggGTslLI~VgV~~~~~~qi~s~~~~~~Y~~l~~~~g~~ 469 (482)
T 3mp7_A 400 KVLQRYIPYVTFWGSLTVALIAVLADFLG------AL--GTGTGILLTVGILYRFYEEIAREQITEMFPALRKLFGAG 469 (482)
T ss_dssp C------CTHHHHHHHHHHHHHHHHHHHT------CS--SCSHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHh------cc--CCceeeeeeHHHHHHHHHHHHHHHHHHhhHHHHHHhcCC
Confidence 99999999999999999999999999975 22 389999999999999999999999999999995 66654
No 7
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=1.2e-90 Score=722.88 Aligned_cols=375 Identities=16% Similarity=0.170 Sum_probs=316.8
Q ss_pred cCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHHhc
Q 014160 13 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ 92 (429)
Q Consensus 13 ~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl~~ 92 (429)
++|+|+|++||++++++||+ +|||+||+|.++.. +.++.+.++|+++| ++|+|+|+|||+|||||||+||||+.
T Consensus 26 ~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~---~~~~~~~~~~~~~a--~~~~sifaLGI~PyItASII~QLL~g 99 (490)
T 2ww9_A 26 KLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTP---NVNDPIYFLRGVFG--CEPRTLLEFGLFPNISSGLILQLLAG 99 (490)
T ss_dssp CCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTT---CSSCCCTTTHHHHT--CCSSSTTSSTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHh---cccCHHHHHHHHHc--ccccHHHHHhhHHHHHHHHHHHHHhh
Confidence 46899999999999999999 99999999998651 22346678888885 56999999999999999999999964
Q ss_pred --cchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 014160 93 --INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISD 170 (429)
Q Consensus 93 --~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~it~ 170 (429)
++| ++| |||+||||+|++|||+|+++|++||.+++.++ .++.+.+..+.++++++|++|++++|||||+|||
T Consensus 100 ~~iip----l~k-ege~gR~k~~~~tR~lti~la~iQa~~~~~~~-~~~~~~~~~~~~~ivl~L~~Gt~~lmwLgE~It~ 173 (490)
T 2ww9_A 100 LKVIK----VNF-KIQSDRELFQSLTKVFAIVQYVILTNIFIFAG-YFGDDLSVVQIGLINFQLVGAGIFTTLLAEVIDK 173 (490)
T ss_dssp HTSSC----CCT-TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccccc----ccc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 665 89999999999999999999999999999865 3334455556778899999999999999999999
Q ss_pred -ccCCCchhHHHHHHHhhhchHHHH--------------------HHHHHH-hhc----Cc---------hhHHHHHHHH
Q 014160 171 -LKLGNGTSLLIFTSIISYLPASFG--------------------RTVAEA-FQD----GN---------YIGLATIIIS 215 (429)
Q Consensus 171 -~GiGnG~SliI~~~I~~~lp~~i~--------------------~~~~~~-~~~----~~---------~~~~~~~~~~ 215 (429)
||+|||+|++|++||++++|+.+. +.++.. .+. ++ +++ ++.+++
T Consensus 174 G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~~~r~~lp~-l~~l~~ 252 (490)
T 2ww9_A 174 GFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPN-LTTTII 252 (490)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCS-HHHHHH
T ss_pred ccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhHHhhccccH-HHHHHH
Confidence 999999999999999999998764 444322 111 11 123 345666
Q ss_pred HHHHHHHHHhhhccEEeeeeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHH----hhc----c--
Q 014160 216 FILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR----FTG----I-- 285 (429)
Q Consensus 216 ~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~----~~~----~-- 285 (429)
++++++++||+|++||||||||+|| + ++++|+|+|+||+||||+|||+|++++|+++++ +.+ +
T Consensus 253 ~l~vi~~vV~~q~~~rrIPIqyak~-~------g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~~~~~ 325 (490)
T 2ww9_A 253 VLAIAIIVCYLQSVRVELPIRSTRA-R------GTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHI 325 (490)
T ss_dssp HHHHHHHHHHHTTCCEECCCBCSSS-S------SBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCCCCSS
T ss_pred HHHHHHHHheeeeeEEEEEEEEccc-C------CcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Confidence 7788889999999999999999985 2 689999999999999999999999999988887 432 1
Q ss_pred --h----HH---------HHHHHhcCC--------CC-cc----hHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHcCC
Q 014160 286 --A----AL---------KKAAVALNP--------GG-SF----YLPTNILLIAFFNYYYTFLQ-LDPDDVSEQLKRQGA 336 (429)
Q Consensus 286 --~----~~---------~~~~~~~~~--------~~-~~----y~~~y~~li~~fs~~~~~i~-~~p~~iAe~Lkk~g~ 336 (429)
+ |. +...++++| ++ |+ |.++|+++|++|+|||+++. +||||+||||||||+
T Consensus 326 ~~~~lg~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~G~ 405 (490)
T 2ww9_A 326 ICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGI 405 (490)
T ss_dssp SCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccccccchhccccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Confidence 1 21 112234554 44 66 88999999999999999996 999999999999999
Q ss_pred ccccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHHHccC
Q 014160 337 SIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKY 416 (429)
Q Consensus 337 ~IpGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~~~~~Y 416 (429)
+|||+||| +|+|||+|+++|+|++||+|++++|++|++++ .. .||||+||+|||++|++||+++|..++.+
T Consensus 406 ~IpGiRpG-~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~------~~--ggGTslLI~VgV~~~~~~qi~~e~~~~g~ 476 (490)
T 2ww9_A 406 TLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLG------LK--GKAAGIVVGIAGGFSLLEVITIEYQQSGG 476 (490)
T ss_dssp TSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CC--SSHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hc--CcHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 99999999999999999999999999999974 12 38999999999999999999999887754
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=6.8e-87 Score=693.21 Aligned_cols=370 Identities=19% Similarity=0.183 Sum_probs=313.2
Q ss_pred hcCchhhHHHHHHHHHHHHHhCcccccCCcChHhhhhhcccchhHHHHHhhcCCCCccchhhhcCchHHHHHHHHHHHH-
Q 014160 12 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLL- 90 (429)
Q Consensus 12 ~~~~l~~kil~Tl~~l~i~rlG~~IPlPGid~~~~~~~~~~~~~l~~~~~~sGg~~~~~SlfsLGI~PyItAsIi~QLl- 90 (429)
.|+++|+|++||++++++||+|+|||+||+|.++. .++++++.++| | ++|+|+|+|||+|||||||+||||
T Consensus 24 ~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~-----~~~~~~~~~~f-a--~~~~SifaLGI~PyItASII~QLL~ 95 (476)
T 2wwb_A 24 RKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDS-----ADPFYWMRVIL-A--SNRGTLMELGISPIVTSGLIMQLLA 95 (476)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTC-----SCCCHHHHHHH-C--SSCSSSCSSSSTHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhc-----cccHHHHHHHH-c--cccccHHHHhhHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999998752 24688888888 4 569999999999999999999999
Q ss_pred -hccchhhHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 014160 91 -AQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVL-YLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERI 168 (429)
Q Consensus 91 -~~~~p~l~~l~~~~g~~gr~~~~~~tr~ltl~la~iQa~~~~~-~~~~~~~~~~~~~~~~~vl~L~aGs~~l~wL~e~i 168 (429)
+.++|.++|++ ||||+|++|||+|+++|++||++++. ++.....+.+..+.++++++|++|++++|||||+|
T Consensus 96 g~~iip~~~~l~------gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~I 169 (476)
T 2wwb_A 96 GAKIIEVGDTPK------DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELL 169 (476)
T ss_dssp HHCCCSCCSSSS------CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCccccchhhc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788766652 89999999999999999999999887 43111123445566788999999999999999999
Q ss_pred hc-ccCCCchhHHHHHHHhhhc------hH------------HHHHHHHHHh-hc------------CchhHHHHHHHHH
Q 014160 169 SD-LKLGNGTSLLIFTSIISYL------PA------------SFGRTVAEAF-QD------------GNYIGLATIIISF 216 (429)
Q Consensus 169 t~-~GiGnG~SliI~~~I~~~l------p~------------~i~~~~~~~~-~~------------~~~~~~~~~~~~~ 216 (429)
|| ||+|||+|++|++||++++ |. .+.+.++... .. ++.+++ ..++++
T Consensus 170 t~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~~~-~~ll~~ 248 (476)
T 2wwb_A 170 QKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL-MNLIAT 248 (476)
T ss_dssp HTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHHHH-HHHHHH
T ss_pred hccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccchH-HHHHHH
Confidence 99 9999999999999999999 76 3333333221 11 233343 345556
Q ss_pred HHHHHHHHhhhccEEeeeeeecccccccCCCCCCccccceeecccCChhHHHHHHhHhhHHHHHHhh----c-ch-----
Q 014160 217 ILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----G-IA----- 286 (429)
Q Consensus 217 l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~----~-~~----- 286 (429)
+++++++||+|++|||||+||+| .+ ++++|+|+|+||+||||+|||+|++++|++++++. + +.
T Consensus 249 ~~v~~~vV~~q~~~rrIPv~yak-~~------g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l 321 (476)
T 2wwb_A 249 IFVFAVVIYFQGFRVDLPIKSAR-YR------GQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLL 321 (476)
T ss_dssp HHHHHHHHHHHHCCBCCCCCBCS-SS------SBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH
T ss_pred HHHHhheeEEEEEEEEEEEEecc-cC------CccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhh
Confidence 78888999999999999999997 53 67899999999999999999999999999999876 2 11
Q ss_pred --HHHH-------------HHHhcCC--------CCcchHHHHHHHHHHHHHHHH----Hhc-cChHHHHHHHHHcCCcc
Q 014160 287 --ALKK-------------AAVALNP--------GGSFYLPTNILLIAFFNYYYT----FLQ-LDPDDVSEQLKRQGASI 338 (429)
Q Consensus 287 --~~~~-------------~~~~~~~--------~~~~y~~~y~~li~~fs~~~~----~i~-~~p~~iAe~Lkk~g~~I 338 (429)
|.+. ..++++| ++|+|.++|.+++++|||||+ ++. +||||+||||||||++|
T Consensus 322 g~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~I 401 (476)
T 2wwb_A 322 GTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVM 401 (476)
T ss_dssp CSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTT
T ss_pred hhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 3222 4456666 578999999999999999999 775 99999999999999999
Q ss_pred ccccCChhHHHHHHHHHhHHHHHhHHHHHHHHHhHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 014160 339 PLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEII 412 (429)
Q Consensus 339 pGirpG~~T~~yL~k~i~r~t~~Ga~~l~~ia~~P~~~~~~~~~~~~~~~gGtslLI~V~v~~~~~~qi~~~~~ 412 (429)
||+|| ++|+|||+|+++|+|++||+|++++|++|++++ .. +||||+||+||++++++||+++|..
T Consensus 402 pGiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~------~~--~gGTslLI~Vgv~~~~~e~i~~e~~ 466 (476)
T 2wwb_A 402 RGHRE-TSMVHELNRYIPTAAAFGGLCIGALSVLADFLG------AI--GSGTGILLAVTIIYQYFEIFVKEQS 466 (476)
T ss_dssp CCCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CS--SCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh--cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 899999999999999999999999999999975 22 6899999999999999999998876
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=60.19 E-value=5.7 Score=32.34 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=18.3
Q ss_pred cCCccccccCChhHHHHHHHHHh
Q 014160 334 QGASIPLVRPGKSTAAFLKTVLS 356 (429)
Q Consensus 334 ~g~~IpGirpG~~T~~yL~k~i~ 356 (429)
....|||+||||.-.+.+++..-
T Consensus 37 k~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 37 QRVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp TTCCCTTSCTTCCCHHHHHHHHG
T ss_pred ccCCCCCcCCCCCCHHHHHHHHh
Confidence 35799999999987777777664
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=52.55 E-value=9 Score=31.76 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=18.5
Q ss_pred CCccccccCChhHHHHHHHHHhH
Q 014160 335 GASIPLVRPGKSTAAFLKTVLSR 357 (429)
Q Consensus 335 g~~IpGirpG~~T~~yL~k~i~r 357 (429)
...|||+||||.-.+.+++....
T Consensus 41 ~v~ipGFRkGKvP~~vi~k~yG~ 63 (121)
T 1p9y_A 41 KVRIDGLRKGKVPMNIVAQRYGA 63 (121)
T ss_dssp TCCCTTSCTTCSCHHHHHHHHHH
T ss_pred hCccCCcCCCCCCHHHHHHHHHH
Confidence 47999999999877777776643
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=44.24 E-value=7.3 Score=31.82 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=18.8
Q ss_pred HHHHHcCCccccccCChhHHHHHHHHHh
Q 014160 329 EQLKRQGASIPLVRPGKSTAAFLKTVLS 356 (429)
Q Consensus 329 e~Lkk~g~~IpGirpG~~T~~yL~k~i~ 356 (429)
++++| ...|||+||||.-.+.+++..-
T Consensus 32 ~~~~k-~~~ipGFRkGKvP~~vi~k~yG 58 (112)
T 2d3o_1 32 AGLAR-DVRVPGFRPGKAPRKVIENRVG 58 (112)
T ss_dssp HHHHT-TSCBTTBCTTCCCSTTHHHHTT
T ss_pred HHHHh-hCCCCCcCCCCCCHHHHHHHhC
Confidence 34433 4789999999876666666553
No 12
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=25.31 E-value=43 Score=33.33 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=19.1
Q ss_pred cCCccccccCChhHHHHHHHHHh
Q 014160 334 QGASIPLVRPGKSTAAFLKTVLS 356 (429)
Q Consensus 334 ~g~~IpGirpG~~T~~yL~k~i~ 356 (429)
....|||+||||.-.+-+++..-
T Consensus 40 k~~~ipGFRkGKvP~~~i~k~yG 62 (392)
T 1t11_A 40 KNRRFDGFRKGKVPMKMVAKMYG 62 (392)
T ss_dssp TTCCCTTSCSSCCCHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHh
Confidence 35899999999988888877765
No 13
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=21.21 E-value=51 Score=33.22 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.0
Q ss_pred CCccccccCChhHHHHHHHHHh
Q 014160 335 GASIPLVRPGKSTAAFLKTVLS 356 (429)
Q Consensus 335 g~~IpGirpG~~T~~yL~k~i~ 356 (429)
...|||+||||.-.+.+++..-
T Consensus 38 ~~~ipGFRkGKvP~~vi~~~yG 59 (432)
T 1w26_A 38 KVRIDGFRKGKVPMNIVAQRYG 59 (432)
T ss_dssp HTTCGGGCCSSSCHHHHHHHHC
T ss_pred hCCCCCcCCCCCCHHHHHHHHh
Confidence 4789999999988787777664
Done!