Query 014161
Match_columns 429
No_of_seqs 110 out of 125
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 06:34:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qph_A TRMB, A global transcri 83.8 1 3.6E-05 44.7 5.0 70 343-421 23-94 (342)
2 1qbj_A Protein (double-strande 81.9 3.6 0.00012 32.7 6.6 63 335-408 9-76 (81)
3 1xmk_A Double-stranded RNA-spe 73.7 6 0.00021 31.5 5.6 56 333-398 8-63 (79)
4 3r0a_A Putative transcriptiona 68.5 9.5 0.00033 31.8 6.1 74 343-425 31-114 (123)
5 1sd4_A Penicillinase repressor 61.1 20 0.00068 29.0 6.5 49 345-398 17-65 (126)
6 1qgp_A Protein (double strande 60.6 16 0.00056 28.3 5.6 56 339-405 17-77 (77)
7 3neu_A LIN1836 protein; struct 59.6 29 0.00099 28.9 7.5 41 364-405 41-81 (125)
8 3tqn_A Transcriptional regulat 56.8 14 0.00047 30.4 4.8 39 366-405 39-77 (113)
9 1sfx_A Conserved hypothetical 55.1 67 0.0023 24.4 8.8 71 346-425 28-104 (109)
10 2b0l_A GTP-sensing transcripti 47.8 26 0.00088 28.5 5.0 62 338-411 30-97 (102)
11 2dql_A PEX protein; circadian 40.6 98 0.0033 25.4 7.6 81 339-421 21-112 (115)
12 3by6_A Predicted transcription 39.9 86 0.0029 26.1 7.3 39 364-403 39-77 (126)
13 1tbx_A ORF F-93, hypothetical 39.1 44 0.0015 25.9 5.0 57 346-407 16-72 (99)
14 1y0u_A Arsenical resistance op 38.6 42 0.0014 26.1 4.8 50 350-409 41-90 (96)
15 2ek5_A Predicted transcription 37.5 36 0.0012 28.7 4.5 42 363-405 31-72 (129)
16 2qww_A Transcriptional regulat 37.5 1.5E+02 0.0052 24.1 8.5 39 346-393 49-87 (154)
17 2oqg_A Possible transcriptiona 34.5 60 0.002 25.5 5.2 72 338-421 23-102 (114)
18 3sxy_A Transcriptional regulat 32.9 41 0.0014 30.1 4.4 41 363-404 38-78 (218)
19 3pqk_A Biofilm growth-associat 32.9 1E+02 0.0035 24.0 6.3 41 349-398 33-73 (102)
20 1okr_A MECI, methicillin resis 32.4 61 0.0021 25.9 5.0 63 346-414 18-82 (123)
21 4ham_A LMO2241 protein; struct 32.1 1.5E+02 0.0051 24.6 7.6 34 366-400 44-78 (134)
22 3ihu_A Transcriptional regulat 32.1 49 0.0017 29.7 4.8 41 363-404 42-82 (222)
23 1lj9_A Transcriptional regulat 32.0 2E+02 0.0067 23.0 9.7 41 346-395 37-77 (144)
24 2qvo_A Uncharacterized protein 31.7 59 0.002 25.2 4.6 60 353-421 31-90 (95)
25 2a61_A Transcriptional regulat 31.3 1.6E+02 0.0056 23.5 7.6 41 346-395 41-81 (145)
26 2rkh_A Putative APHA-like tran 31.3 43 0.0015 30.3 4.2 53 342-395 14-68 (180)
27 1p6r_A Penicillinase repressor 30.3 42 0.0014 25.3 3.4 48 345-398 16-64 (82)
28 1q1h_A TFE, transcription fact 29.9 27 0.00093 27.8 2.4 66 347-421 27-101 (110)
29 1ztd_A Hypothetical protein PF 29.7 35 0.0012 29.3 3.0 22 334-357 69-90 (133)
30 3bpv_A Transcriptional regulat 29.2 2.1E+02 0.0072 22.6 9.6 52 346-406 37-91 (138)
31 2esh_A Conserved hypothetical 27.9 2.4E+02 0.0082 22.8 8.2 68 349-421 23-103 (118)
32 2hs5_A Putative transcriptiona 27.8 56 0.0019 29.9 4.5 42 363-405 54-95 (239)
33 1jgs_A Multiple antibiotic res 27.6 2.3E+02 0.0078 22.4 10.2 41 346-395 42-82 (138)
34 1hw1_A FADR, fatty acid metabo 27.4 49 0.0017 29.8 3.9 40 363-403 34-73 (239)
35 3f8b_A Transcriptional regulat 27.3 2.5E+02 0.0086 22.8 8.0 84 336-421 7-102 (116)
36 1ub9_A Hypothetical protein PH 27.2 1.1E+02 0.0037 23.1 5.4 67 347-422 25-98 (100)
37 2v7f_A RPS19, RPS19E SSU ribos 26.4 1E+02 0.0034 27.1 5.6 43 377-421 97-139 (150)
38 1xma_A Predicted transcription 25.7 1.8E+02 0.0061 24.9 7.1 74 349-423 51-133 (145)
39 3c7j_A Transcriptional regulat 24.4 79 0.0027 29.0 4.8 42 363-405 52-93 (237)
40 2nyx_A Probable transcriptiona 23.8 3.2E+02 0.011 22.8 10.0 40 347-395 54-93 (168)
41 3bj6_A Transcriptional regulat 22.6 3E+02 0.01 22.1 10.2 41 346-395 48-88 (152)
42 3ic7_A Putative transcriptiona 22.3 1.1E+02 0.0039 25.2 5.0 39 366-405 41-79 (126)
43 3bwg_A Uncharacterized HTH-typ 21.4 79 0.0027 29.0 4.1 40 363-403 32-71 (239)
44 2di3_A Bacterial regulatory pr 21.1 63 0.0022 29.3 3.4 40 365-405 33-76 (239)
45 2bv6_A MGRA, HTH-type transcri 20.9 98 0.0033 24.9 4.2 51 346-405 45-98 (142)
46 3g3z_A NMB1585, transcriptiona 20.4 3.3E+02 0.011 21.7 8.8 40 347-395 40-79 (145)
47 3edp_A LIN2111 protein; APC883 20.3 1.1E+02 0.0037 28.1 4.8 41 363-404 36-76 (236)
48 2hc5_A ORF 99, hypothetical pr 20.2 1.3E+02 0.0043 25.6 4.8 65 352-417 34-100 (117)
49 3k2z_A LEXA repressor; winged 20.0 1.5E+02 0.005 26.2 5.5 53 333-396 6-59 (196)
No 1
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=83.80 E-value=1 Score=44.66 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--CceEEechhhHHHHHhhhHHHHHH
Q 014161 343 SFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GRYYCVGLKRSNEIIGTTTEEMVL 420 (429)
Q Consensus 343 AY~~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~--g~~~avpL~~A~~~l~~~w~~~~~ 420 (429)
+|..|++.|++|..+|. +..|+.-. .|-++|+.|++.|+|..... ..|.++|++++++.+.++|++.+.
T Consensus 23 vY~~Ll~~g~~t~~eia--------~~~gv~~~-~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~~~l~~l~~~~~~~~~ 93 (342)
T 3qph_A 23 TYWTLLVYGPSTAKEIS--------TKSGIPYN-RVYDTISSLKLRGFVTEIEGTPKVYAAYSPRIAFFRFKKELEDIMK 93 (342)
T ss_dssp CSHHHHHHHHHHHSCCS--------SSTTSSSC-SCCHHHHHHHHHTSEEEECCTTCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHH--------HHHCcCHH-HHHHHHHHHHHCCCEEEEcCceeEEEEcCHHHHHHHHHHHHHHHHH
Confidence 45556666665555543 23343322 57799999999999987643 479999999999999999998875
Q ss_pred H
Q 014161 421 K 421 (429)
Q Consensus 421 ~ 421 (429)
.
T Consensus 94 ~ 94 (342)
T 3qph_A 94 K 94 (342)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.87 E-value=3.6 Score=32.74 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC--CCceEEechhhHH
Q 014161 335 QEVKEVIISFFILMEQG---KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT--IGRYYCVGLKRSN 408 (429)
Q Consensus 335 Qe~KEaiLAY~~Ll~~g---~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~--~g~~~avpL~~A~ 408 (429)
++..+.||. +|...| ++|..+|.. ++|+.-. .|..+|.+|++.|+|.+.. .|.|.+.|+.++.
T Consensus 9 ~~~~~~IL~--~L~~~~pg~~~t~~eLA~--------~Lgvsr~-tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 9 QDQEQRILK--FLEELGEGKATTAHDLSG--------KLGTPKK-EINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHH--HHHHHCTTCCBCHHHHHH--------HHTCCHH-HHHHHHHHHHHTTSEEEESSSSCEEEEC------
T ss_pred hHHHHHHHH--HHHHcCCCCCcCHHHHHH--------HHCcCHH-HHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHhc
Confidence 344555663 455666 589887754 5666654 7999999999999997643 2789999988754
No 3
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=73.70 E-value=6 Score=31.50 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 014161 333 IQQEVKEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 398 (429)
Q Consensus 333 eeQe~KEaiLAY~~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~ 398 (429)
...+.+|.||.| |.++|+.|..+|.+. +|+.-.=.|...|.+|++.|+|.+...|+
T Consensus 8 ~~~~~~~~IL~~--Lk~~g~~ta~eiA~~--------Lgit~~~aVr~hL~~Le~eGlV~~~~~gR 63 (79)
T 1xmk_A 8 DMAEIKEKICDY--LFNVSDSSALNLAKN--------IGLTKARDINAVLIDMERQGDVYRQGTTP 63 (79)
T ss_dssp HHHHHHHHHHHH--HHHTCCEEHHHHHHH--------HCGGGHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred cchhHHHHHHHH--HHHcCCcCHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCEEecCCCC
Confidence 446889999955 888999998887654 45555337889999999999998665565
No 4
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.51 E-value=9.5 Score=31.76 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=54.7
Q ss_pred HHHHHhhcC-C-CCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC-----CC---ceEEechhhHHHHHh
Q 014161 343 SFFILMEQG-K-ATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT-----IG---RYYCVGLKRSNEIIG 412 (429)
Q Consensus 343 AY~~Ll~~g-~-lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~-----~g---~~~avpL~~A~~~l~ 412 (429)
.|..|+..+ + +|..+|.+++. .+- =.|.++|++|++.|+|.+.. .| .|.++|.++..+.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~--------~s~-sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~ 101 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLK--------LDV-STVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQ 101 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHT--------SCH-HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHC--------cCH-HHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHH
Confidence 344556554 4 89999976653 221 25889999999999998853 23 367889999999999
Q ss_pred hhHHHHHHHHhcC
Q 014161 413 TTTEEMVLKAQQG 425 (429)
Q Consensus 413 ~~w~~~~~~~~~~ 425 (429)
+.+++...+..+.
T Consensus 102 ~~~~~~~~~~~~~ 114 (123)
T 3r0a_A 102 KIVQSWADRLGQE 114 (123)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9988888776654
No 5
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=61.06 E-value=20 Score=28.97 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 014161 345 FILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 398 (429)
Q Consensus 345 ~~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~ 398 (429)
.+|+.+|++|..+|.+.+.. + -|.+ .=.|...|++|++-|+|.+..+|+
T Consensus 17 ~~L~~~~~~t~~el~~~l~~---~-~~~~-~~Tvt~~l~rLe~kGlv~R~~~~r 65 (126)
T 1sd4_A 17 NIIWDKKSVSANEIVVEIQK---Y-KEVS-DKTIRTLITRLYKKEIIKRYKSEN 65 (126)
T ss_dssp HHHHHSSSEEHHHHHHHHHT---T-SCCC-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHhcCCCCHHHHHHHHhh---c-CCCC-hhhHHHHHHHHHHCCceEEEeCCC
Confidence 45777889999999777642 0 0111 124889999999999999877665
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=60.56 E-value=16 Score=28.31 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--CceEEechh
Q 014161 339 EVIISFFILMEQG---KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GRYYCVGLK 405 (429)
Q Consensus 339 EaiLAY~~Ll~~g---~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~--g~~~avpL~ 405 (429)
+.|| .+|.+.| ++|..+|.+ ++|+.-. .|...|.+|++.|+|.+... |.|.+.|.+
T Consensus 17 ~~IL--~~L~~~~~~~~~t~~eLA~--------~Lgvs~~-tV~~~L~~L~~~G~I~~~g~~~~~W~i~~~~ 77 (77)
T 1qgp_A 17 QRIL--KFLEELGEGKATTAHDLSG--------KLGTPKK-EINRVLYSLAKKGKLQKEAGTPPLWKIAVSD 77 (77)
T ss_dssp HHHH--HHHHHHCSSSCEEHHHHHH--------HHCCCHH-HHHHHHHHHHHHTSEEEECSSSCEEEECCCC
T ss_pred HHHH--HHHHHcCCCCCcCHHHHHH--------HHCcCHH-HHHHHHHHHHHCCCEEecCCCCCceEecCCC
Confidence 4455 4566666 689988765 4566654 79999999999999977432 688888763
No 7
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=59.63 E-value=29 Score=28.92 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=31.5
Q ss_pred HHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014161 364 ELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 405 (429)
Q Consensus 364 ~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 405 (429)
+-|.++||+. .-.|.+|+..|++.|+|....+..+.+.+..
T Consensus 41 ~~La~~~~vS-r~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125)
T 3neu_A 41 REMGVKLAVN-PNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECCCH
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHHCCeEEEecCCEEEEecCc
Confidence 3355678987 4789999999999999988776555565544
No 8
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=56.84 E-value=14 Score=30.38 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=30.6
Q ss_pred HHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014161 366 IKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 405 (429)
Q Consensus 366 L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 405 (429)
|.++||+. .-.|.+|+..|++.|+|...+...+.+.+..
T Consensus 39 La~~~~vS-r~tvr~al~~L~~~Gli~~~~~~G~~V~~~~ 77 (113)
T 3tqn_A 39 ISTEYQIN-PLTVSKAYQSLLDDNVIEKRRGLGMLVKAGA 77 (113)
T ss_dssp HHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECTTH
T ss_pred HHHHHCcC-HHHHHHHHHHHHHCCCEEEecCCeEEEeCCc
Confidence 45678987 5689999999999999988766556666554
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=55.12 E-value=67 Score=24.42 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=49.6
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC--Cc----eEEechhhHHHHHhhhHHHHH
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI--GR----YYCVGLKRSNEIIGTTTEEMV 419 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~--g~----~~avpL~~A~~~l~~~w~~~~ 419 (429)
.|...|++|..+|.+.+ |+.- =.|...+.+|++.|+|.+... ++ +......+..+.+...+++++
T Consensus 28 ~l~~~~~~s~~ela~~l--------~is~-~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~~~~~~ 98 (109)
T 1sfx_A 28 LLLERGGMRVSEIAREL--------DLSA-RFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGEI 98 (109)
T ss_dssp HHHHHCCBCHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHHHHHHHHH
Confidence 44556789988886654 4432 258899999999999988542 33 234455667777888888888
Q ss_pred HHHhcC
Q 014161 420 LKAQQG 425 (429)
Q Consensus 420 ~~~~~~ 425 (429)
....+.
T Consensus 99 ~~~~~~ 104 (109)
T 1sfx_A 99 ERIEKM 104 (109)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 776544
No 10
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=47.79 E-value=26 Score=28.55 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcCC-C-CHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCC--ceEEec--hhhHHHHH
Q 014161 338 KEVIISFFILMEQGK-A-TRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIG--RYYCVG--LKRSNEII 411 (429)
Q Consensus 338 KEaiLAY~~Ll~~g~-l-T~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g--~~~avp--L~~A~~~l 411 (429)
++.|+ . .+..|. + |..+ |.++||+. .-.|.+|+..|++.|+|....+| .+.+.+ .+++.++.
T Consensus 30 ~~~I~--~-~l~~g~~lps~~e--------La~~lgVS-r~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 30 IEHIF--E-ELDGNEGLLVASK--------IADRVGIT-RSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp HHHHT--T-SSBTTEEEECHHH--------HHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred HHHHH--h-hhcCCCcCCCHHH--------HHHHHCcC-HHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 56665 2 233443 4 6665 45678874 56899999999999999887733 344433 44444443
No 11
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=40.58 E-value=98 Score=25.41 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC-----CCc----eEEechh-hH
Q 014161 339 EVIISFFI-LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT-----IGR----YYCVGLK-RS 407 (429)
Q Consensus 339 EaiLAY~~-Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~-----~g~----~~avpL~-~A 407 (429)
|.-+++.. ++..++.+.-+|.+.+++.. ..++.+ .=.+-.+|.+|++.|+|+... .|. |..++.- ++
T Consensus 21 ~l~~~~IL~lL~~~~~~Gyei~~~l~~~~-~~~~is-~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~ 98 (115)
T 2dql_A 21 EVAICYILYVLLQGESYGTELIQQLETEH-PTYRLS-DTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQ 98 (115)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHHHHC-TTEECC-HHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHc-CCCCCC-cchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHH
Confidence 33444333 44568899999988888652 212111 123567899999999998641 232 6666654 45
Q ss_pred HHHHhhhHHHHHHH
Q 014161 408 NEIIGTTTEEMVLK 421 (429)
Q Consensus 408 ~~~l~~~w~~~~~~ 421 (429)
.+..-+.|++++..
T Consensus 99 l~~~~~~~~~~~~~ 112 (115)
T 2dql_A 99 AEDLARLWQNYIYV 112 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66677889888754
No 12
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=39.86 E-value=86 Score=26.10 Aligned_cols=39 Identities=13% Similarity=0.000 Sum_probs=29.8
Q ss_pred HHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEec
Q 014161 364 ELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVG 403 (429)
Q Consensus 364 ~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avp 403 (429)
+-|.++||+. .-.|.+|+..|++.|+|...++..+.+.+
T Consensus 39 ~~La~~~~vS-r~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 39 RETALQEKIN-PNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHCcC-HHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 3345678875 56899999999999999887765555555
No 13
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=39.10 E-value=44 Score=25.88 Aligned_cols=57 Identities=21% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhH
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRS 407 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A 407 (429)
.|...|+.|..+|...+ .+.+|.+- =.+...+++|++.|+|.+..+++-..+-+.++
T Consensus 16 ~l~~~~~~~~~el~~~l----a~~l~is~-~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~ 72 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKV----NAEFPMST-ATFYDAKKFLIQEGFVKERQERGEKRLYLTEK 72 (99)
T ss_dssp HHTTCTTCBHHHHHHHH----HTTSCCCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred HHHHcCCcCHHHHHHHH----HHHcCCCH-HHHHHHHHHHHHCCCEEEEecCCceEEEECHH
Confidence 34456778888874433 23344432 24788999999999998876555444444443
No 14
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=38.58 E-value=42 Score=26.13 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=35.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHH
Q 014161 350 QGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNE 409 (429)
Q Consensus 350 ~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~ 409 (429)
.|++|..+|.++ +|+.-. .|...|..|++.|+|.+.. |.|...|..++.+
T Consensus 41 ~~~~~~~eLa~~--------l~is~~-tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~~~ 90 (96)
T 1y0u_A 41 DKGRSEEEIMQT--------LSLSKK-QLDYHLKVLEAGFCIERVG-ERWVVTDAGKIVD 90 (96)
T ss_dssp HTTCCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEEET-TEEEECTTTCCC-
T ss_pred cCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCEEEEC-CEEEECCCchHHH
Confidence 577888876543 454432 4889999999999999887 8777777544433
No 15
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=37.50 E-value=36 Score=28.73 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=32.1
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 405 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 405 (429)
|+-|.++||++ .-.|.+|+..|+..|+|...++..+.+.+..
T Consensus 31 e~~La~~~gvS-r~tVr~Al~~L~~~Gli~~~~g~G~~V~~~~ 72 (129)
T 2ek5_A 31 TNELAAFHRIN-PATARNGLTLLVEAGILYKKRGIGMFVSAQA 72 (129)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHTTTSEEEETTTEEEECTTH
T ss_pred HHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEecCCEEEEecCc
Confidence 34456778985 5689999999999999988776556666654
No 16
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=37.46 E-value=1.5e+02 Score=24.09 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeee
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVAR 393 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~ 393 (429)
.|...|++|..+|.+.. |.+-. .+...+.+|++.|+|.+
T Consensus 49 ~l~~~~~~t~~eLa~~l--------~~~~~-tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 49 VIYSTPGISVADLTKRL--------IITGS-SAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCHH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHCCCCCHHHHHHHH--------CCCHH-HHHHHHHHHHHCCCEEe
Confidence 34556778888886655 33322 68899999999999998
No 17
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=34.50 E-value=60 Score=25.52 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc---eEEechh-----hHHH
Q 014161 338 KEVIISFFILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR---YYCVGLK-----RSNE 409 (429)
Q Consensus 338 KEaiLAY~~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~---~~avpL~-----~A~~ 409 (429)
+..||.+ | ..|+.|..+|.+. +|+.-. .|...|.+|++.|+|.+...|+ |...|-. +...
T Consensus 23 r~~IL~~--L-~~~~~~~~ela~~--------l~is~~-tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~ 90 (114)
T 2oqg_A 23 RWEILTE--L-GRADQSASSLATR--------LPVSRQ-AIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLE 90 (114)
T ss_dssp HHHHHHH--H-HHSCBCHHHHHHH--------SSSCHH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHH--H-HcCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHH
Confidence 3445553 3 5688888887553 344322 4789999999999998866666 4444322 2233
Q ss_pred HHhhhHHHHHHH
Q 014161 410 IIGTTTEEMVLK 421 (429)
Q Consensus 410 ~l~~~w~~~~~~ 421 (429)
.+...|++.+..
T Consensus 91 ~~~~~~~~~l~~ 102 (114)
T 2oqg_A 91 RIGAEWDRRLAA 102 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344556666554
No 18
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=32.95 E-value=41 Score=30.09 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=32.0
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 404 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL 404 (429)
|+-|.++||+.-. .|-+||..|+..|||+..++..+.+.++
T Consensus 38 e~~La~~lgVSRt-pVREAL~~L~~eGlv~~~~~~G~~V~~~ 78 (218)
T 3sxy_A 38 VRELSEKLGISFT-PVRDALLQLATEGLVKVVPRVGFFVTDV 78 (218)
T ss_dssp HHHHHHHHTCCHH-HHHHHHHHHHHHTSEEEETTTEEEECCC
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEeCCCceEEcCC
Confidence 4456678898754 8999999999999998877665666554
No 19
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=32.89 E-value=1e+02 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=30.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCc
Q 014161 349 EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGR 398 (429)
Q Consensus 349 ~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~ 398 (429)
..|+.|..+|.+. +|+.-. .+...|.+|++.|||.+...|+
T Consensus 33 ~~~~~~~~ela~~--------l~is~~-tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 33 VEGEFSVGELEQQ--------IGIGQP-TLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp HTCCBCHHHHHHH--------HTCCTT-HHHHHHHHHHHTTSEEEECSSS
T ss_pred HhCCCCHHHHHHH--------HCcCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 3588888886543 454444 6889999999999998876664
No 20
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=32.39 E-value=61 Score=25.85 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcce-ecHHHHHHHHHHcCeeeecCCCc-eEEechhhHHHHHhhh
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCN-FDVDDAVHKLEKLGIVARDTIGR-YYCVGLKRSNEIIGTT 414 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vd-Fdv~dAL~kL~rLgLv~~d~~g~-~~avpL~~A~~~l~~~ 414 (429)
+|+..|++|..+|.+.+.. + ..+. =.|...|++|++.|+|.+..+|+ +..+++-+.-+.+-+.
T Consensus 18 ~l~~~~~~t~~ela~~l~~---~---~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~ 82 (123)
T 1okr_A 18 IIWMKKYASANNIIEEIQM---Q---KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKT 82 (123)
T ss_dssp HHHHHSSEEHHHHHHHHHH---H---CCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHHhc---c---CCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHH
Confidence 4556788999998777642 1 1111 24788999999999999876554 4446665544443333
No 21
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=32.14 E-value=1.5e+02 Score=24.60 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHHHhCCcceecHHHHHHHHHHcCeeeecCC-CceE
Q 014161 366 IKEEFGESCNFDVDDAVHKLEKLGIVARDTI-GRYY 400 (429)
Q Consensus 366 L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~-g~~~ 400 (429)
|.++||+.- -.|.+|+..|+..|+|...++ |.+.
T Consensus 44 La~~~gVSr-~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 44 FASRIGVNP-NTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp HHHHHTCCH-HHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHCCCH-HHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 567788875 489999999999999977664 4443
No 22
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=32.08 E-value=49 Score=29.66 Aligned_cols=41 Identities=27% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 404 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL 404 (429)
|+-|.++||+.-. .|-+||..|+..|||+..++..+.+.++
T Consensus 42 E~~La~~lgVSRt-pVREAl~~L~~eGlv~~~~~~G~~V~~~ 82 (222)
T 3ihu_A 42 ETDLVAHFGVGRN-SVREALQRLAAEGIVDLQRHRGAVIRRL 82 (222)
T ss_dssp HHHHHHHHTCCHH-HHHHHHHHHHHTTSEEECSTTCEEECCC
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHCCCEEEecCCCeEEecC
Confidence 3445677888754 8999999999999998877655555554
No 23
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=31.99 E-value=2e+02 Score=23.03 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 395 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 395 (429)
.|...|++|..+|.+.. |.+- =.|..++.+|++.|+|.+..
T Consensus 37 ~l~~~~~~t~~~la~~l--------~~s~-~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 37 RVCENPGIIQEKIAELI--------KVDR-TTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHCcCcCHHHHHHHH--------CCCH-hHHHHHHHHHHHCCCEEeec
Confidence 34556778888876654 3332 26889999999999998864
No 24
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=31.68 E-value=59 Score=25.23 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHHHHHH
Q 014161 353 ATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEEMVLK 421 (429)
Q Consensus 353 lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~~l~~~w~~~~~~ 421 (429)
+|..+|.+.. |.+- =.+...+.+|++.|+|....+++...+-|-+.-..+-+.+.+.+..
T Consensus 31 ~t~~eLa~~l--------~i~~-~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~~~~ 90 (95)
T 2qvo_A 31 VYIQYIASKV--------NSPH-SYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSIIDI 90 (95)
T ss_dssp EEHHHHHHHS--------SSCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHH--------CcCH-HHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHHHHH
Confidence 7887776542 3332 3578899999999999444457766666666555555555554433
No 25
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=31.34 E-value=1.6e+02 Score=23.47 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 395 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 395 (429)
.|...|++|..+|.+.. |.+-. .+...+.+|++.|+|.+..
T Consensus 41 ~l~~~~~~~~~~la~~l--------~~s~~-tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 41 KIYFEGPKRPGELSVLL--------GVAKS-TVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHCCBCHHHHHHHH--------TCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHcCCCCHHHHHHHH--------CCCch-hHHHHHHHHHHCCCeeecC
Confidence 34456788988887543 43322 6889999999999998864
No 26
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=31.27 E-value=43 Score=30.26 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=40.0
Q ss_pred HHHHH--HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014161 342 ISFFI--LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 395 (429)
Q Consensus 342 LAY~~--Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 395 (429)
++|++ |+..+|.|+=|+...|++|.+..+|- +-.=..-++++|++-|+|+...
T Consensus 14 ~~l~VLGlL~e~p~h~Yei~~~i~~~~~~s~gS-iY~~~~~~l~~Le~~GlI~~~~ 68 (180)
T 2rkh_A 14 VRLCALGTIASQPMRYSELAGSVRHFTSRIMGP-SLELMGISIELLRYEGLVEAVD 68 (180)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHHHHHHHHHSC-CGGGTTCCTHHHHHTTSEECCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccCCCC-CchhHHHHHHHHHHCCCeeeee
Confidence 45554 55789999999999999999998983 3222222999999999995443
No 27
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=30.31 E-value=42 Score=25.33 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhCCccee-cHHHHHHHHHHcCeeeecCCCc
Q 014161 345 FILMEQGKATRQDLDLRCEELIKEEFGESCNF-DVDDAVHKLEKLGIVARDTIGR 398 (429)
Q Consensus 345 ~~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdF-dv~dAL~kL~rLgLv~~d~~g~ 398 (429)
.+|+..|++|..+|.+.+.. + ..++- .|...|++|++.|+|.+...|+
T Consensus 16 ~~L~~~~~~t~~ei~~~l~~---~---~~~s~~Tv~~~l~rL~~kGlv~r~~~gr 64 (82)
T 1p6r_A 16 KVIWKHSSINTNEVIKELSK---T---STWSPKTIQTMLLRLIKKGALNHHKEGR 64 (82)
T ss_dssp HHHHTSSSEEHHHHHHHHHH---H---SCCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHcCCCCCHHHHHHHHhh---c---CCccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 35667788999999877753 1 12222 4889999999999999877664
No 28
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=29.92 E-value=27 Score=27.83 Aligned_cols=66 Identities=23% Similarity=0.381 Sum_probs=36.1
Q ss_pred HhhcC-CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeec----CC-CceE---EechhhHHHHHhhhHHH
Q 014161 347 LMEQG-KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARD----TI-GRYY---CVGLKRSNEIIGTTTEE 417 (429)
Q Consensus 347 Ll~~g-~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d----~~-g~~~---avpL~~A~~~l~~~w~~ 417 (429)
|..+| ++|..+| .+++|++-. .|.+||.+|++.|+|... +. |.+. .+..++..+.+..+=+.
T Consensus 27 l~~~g~~~s~~eL--------a~~lgvs~~-tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~~~~~~~~~ 97 (110)
T 1q1h_A 27 LLDKGTEMTDEEI--------ANQLNIKVN-DVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRL 97 (110)
T ss_dssp HHHHCSCBCHHHH--------HHTTTSCHH-HHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC---------
T ss_pred HHHcCCCCCHHHH--------HHHHCcCHH-HHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHHHHHHHHHH
Confidence 44566 5776664 467787654 799999999999999886 43 4332 35666666666665444
Q ss_pred HHHH
Q 014161 418 MVLK 421 (429)
Q Consensus 418 ~~~~ 421 (429)
++++
T Consensus 98 ~~e~ 101 (110)
T 1q1h_A 98 ILDK 101 (110)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 29
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=29.71 E-value=35 Score=29.31 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHH
Q 014161 334 QQEVKEVIISFFILMEQGKATRQD 357 (429)
Q Consensus 334 eQe~KEaiLAY~~Ll~~g~lT~~~ 357 (429)
--++.||++||+||- |.+|.+|
T Consensus 69 kGd~aEA~iAyAWle--G~is~eE 90 (133)
T 1ztd_A 69 KGDYAEALIAKAWLM--GLISERE 90 (133)
T ss_dssp HHHHHHHHHHHHHHT--TSSCHHH
T ss_pred ccHHHHHHHHHHHHh--ccccHHH
Confidence 457889999999994 7777654
No 30
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=29.21 E-value=2.1e+02 Score=22.56 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC---CCceEEechhh
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT---IGRYYCVGLKR 406 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~---~g~~~avpL~~ 406 (429)
.|...|++|..+|.+.+ |.+- =.|..++.+|++.|+|.+.. +++...+.+.+
T Consensus 37 ~l~~~~~~~~~ela~~l--------~~s~-~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~ 91 (138)
T 3bpv_A 37 RIHREPGIKQDELATFF--------HVDK-GTIARTLRRLEESGFIEREQDPENRRRYILEVTR 91 (138)
T ss_dssp HHHHSTTCBHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred HHHHcCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCEEeecCCCCceeEEeeECH
Confidence 34456789998887654 3332 26889999999999998853 24444444433
No 31
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=27.88 E-value=2.4e+02 Score=22.78 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=44.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCC-c--cee--cHHHHHHHHHHcCeeeecC---CC----ceEEechhh-HHHHHhhhH
Q 014161 349 EQGKATRQDLDLRCEELIKEEFGE-S--CNF--DVDDAVHKLEKLGIVARDT---IG----RYYCVGLKR-SNEIIGTTT 415 (429)
Q Consensus 349 ~~g~lT~~~Ld~~~E~wL~~~fg~-~--vdF--dv~dAL~kL~rLgLv~~d~---~g----~~~avpL~~-A~~~l~~~w 415 (429)
..++.+.-+|...+++ .|. . ++- .+-.+|.+|++.|+|+... +| .|..+|.-+ +.......|
T Consensus 23 ~~~~~~gyel~~~l~~-----~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~~ 97 (118)
T 2esh_A 23 AEKPSHGYELAERLAE-----FGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSL 97 (118)
T ss_dssp HHSCBCHHHHHHHHHT-----TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHH-----hCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHHH
Confidence 4588999999888876 232 2 443 6788999999999998753 23 245555432 344455566
Q ss_pred HHHHHH
Q 014161 416 EEMVLK 421 (429)
Q Consensus 416 ~~~~~~ 421 (429)
.++...
T Consensus 98 ~~~~~~ 103 (118)
T 2esh_A 98 EDMKRR 103 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 32
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=27.75 E-value=56 Score=29.92 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=32.5
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 405 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 405 (429)
|.-|.++||+.- -.|-+||..|+..|||...+...+.+.++.
T Consensus 54 e~~La~~lgVSR-tpVREAL~~L~~eGlv~~~~~~G~~V~~~~ 95 (239)
T 2hs5_A 54 EPDICAALDVSR-NTVREAFQILIEDRLVAHELNRGVFVRVPT 95 (239)
T ss_dssp HHHHHHHHTCCH-HHHHHHHHHHHHTTSEEEETTTEEEECCCC
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEeCCCeeEEeCCC
Confidence 445667889874 489999999999999988876556666543
No 33
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.63 E-value=2.3e+02 Score=22.43 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=29.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 395 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 395 (429)
.|...|+.|..+|.+. +|.+-. .+...+++|++.|+|.+..
T Consensus 42 ~l~~~~~~~~~~la~~--------l~~~~~-tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 42 SIRCAACITPVELKKV--------LSVDLG-ALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp HHHHHSSBCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcCCCCHHHHHHH--------HCCChH-HHHHHHHHHHHCCCEEecC
Confidence 3455677888887633 344322 6888999999999998853
No 34
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=27.36 E-value=49 Score=29.79 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEec
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVG 403 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avp 403 (429)
|+-|.++||+. .-.|-+||..|+..|||...++....+.+
T Consensus 34 E~eLa~~~gVS-R~tVReAL~~L~~eGlv~~~~g~G~~V~~ 73 (239)
T 1hw1_A 34 ERELSELIGVT-RTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (239)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEecCCCcEeeC
Confidence 33455678986 56899999999999999887654444444
No 35
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=27.27 E-value=2.5e+02 Score=22.79 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHhCCccee-cHHHHHHHHHHcCeeeecC----CCc----eEEech
Q 014161 336 EVKEVIISFFIL--MEQGKATRQDLDLRCEELIKEEFGESCNF-DVDDAVHKLEKLGIVARDT----IGR----YYCVGL 404 (429)
Q Consensus 336 e~KEaiLAY~~L--l~~g~lT~~~Ld~~~E~wL~~~fg~~vdF-dv~dAL~kL~rLgLv~~d~----~g~----~~avpL 404 (429)
++.--.+.+.+| +..|+.+.-+|.+++++.....+ .++- .+-.+|.+|++-|+|+... .|. |..+|-
T Consensus 7 ~~~~g~l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~--~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~ 84 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQGDNYVYGIIKQVKEASNGEM--ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEI 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHTTTCC--CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHH
T ss_pred HHHhchHHHHHHHHHHhCCCCHHHHHHHHHHHhCCCC--CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHH
Confidence 344444555553 46789999999999887653322 2222 3678899999999998752 332 444543
Q ss_pred h-hHHHHHhhhHHHHHHH
Q 014161 405 K-RSNEIIGTTTEEMVLK 421 (429)
Q Consensus 405 ~-~A~~~l~~~w~~~~~~ 421 (429)
- ++++...+.|+++...
T Consensus 85 G~~~l~~~~~~~~~~~~~ 102 (116)
T 3f8b_A 85 GHENMRLAFESWSRVDKI 102 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3 3444466678877554
No 36
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=27.17 E-value=1.1e+02 Score=23.13 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=39.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC---CCceEEechh-hH---HHHHhhhHHHHH
Q 014161 347 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT---IGRYYCVGLK-RS---NEIIGTTTEEMV 419 (429)
Q Consensus 347 Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~---~g~~~avpL~-~A---~~~l~~~w~~~~ 419 (429)
|...|+.|..+|.+.+ |.+-. .+...|.+|++.|+|.+.. +++...+-+. +. ...+-+.+.+++
T Consensus 25 L~~~~~~~~~ela~~l--------~is~~-tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~~~~~~ 95 (100)
T 1ub9_A 25 LLPRRKAPFSQIQKVL--------DLTPG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVI 95 (100)
T ss_dssp HHHHSEEEHHHHHHHT--------TCCHH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcCHHHHHHHH--------CcCHH-HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHHHHHHH
Confidence 3456778888876644 43332 4888999999999998644 4443322222 22 334445556655
Q ss_pred HHH
Q 014161 420 LKA 422 (429)
Q Consensus 420 ~~~ 422 (429)
..+
T Consensus 96 ~~~ 98 (100)
T 1ub9_A 96 DGL 98 (100)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 37
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=26.43 E-value=1e+02 Score=27.08 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHHHHHH
Q 014161 377 DVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEEMVLK 421 (429)
Q Consensus 377 dv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~~l~~~w~~~~~~ 421 (429)
.|.+||+.|+..|+|.....+...+.|.. .+.+++--.+++.+
T Consensus 97 tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~--~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 97 IIRKALQQLEAAGFVEKVPGKGRVITPKG--RSFLDKIATELKKE 139 (150)
T ss_dssp HHHHHHHHHHHTTSEEEETTTEEEECHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeCCCceEECCCC--HHHHHHHHHHHHHH
Confidence 58899999999999988766445555433 34455555555543
No 38
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=25.66 E-value=1.8e+02 Score=24.87 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=47.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC----CC----ceEEech-hhHHHHHhhhHHHHH
Q 014161 349 EQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT----IG----RYYCVGL-KRSNEIIGTTTEEMV 419 (429)
Q Consensus 349 ~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~----~g----~~~avpL-~~A~~~l~~~w~~~~ 419 (429)
..|+++.-+|.+.+++.....+++. .=.+-.+|.+|++.|+|++.. .| .|..+|. .++++.....|+++.
T Consensus 51 ~~~~~~gyeI~~~l~~~~~~~~~is-~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~~~~ 129 (145)
T 1xma_A 51 IEGDSYGYEISKNIRIKTDELYVIK-ETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEWELTK 129 (145)
T ss_dssp HHCCEEHHHHHHHHHHHHTTSCCCC-HHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHhhCCccCcC-hhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHHHHHHH
Confidence 4588899999888877654333322 235678999999999998753 23 2444454 234555666787777
Q ss_pred HHHh
Q 014161 420 LKAQ 423 (429)
Q Consensus 420 ~~~~ 423 (429)
....
T Consensus 130 ~~i~ 133 (145)
T 1xma_A 130 KVIN 133 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 39
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=24.43 E-value=79 Score=28.98 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 405 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 405 (429)
|+-|.++||+.- -.|-+||..|+..|||...+.+...+.++.
T Consensus 52 e~~La~~lgVSr-~~VReAL~~L~~~Glv~~~~~~G~~V~~~~ 93 (237)
T 3c7j_A 52 QQELATLFGVSR-MPVREALRQLEAQSLLRVETHKGAVVAPLI 93 (237)
T ss_dssp HHHHHHHHTSCH-HHHHHHHHHHHHTTSEEEETTTEEEECCCH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHCCCEEEeCCCceEEecCC
Confidence 334557788875 479999999999999998877666666554
No 40
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=23.83 E-value=3.2e+02 Score=22.79 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014161 347 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 395 (429)
Q Consensus 347 Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 395 (429)
|...|++|..+|.+.+ |.+-. .|...+++|++.|+|.+..
T Consensus 54 L~~~~~~t~~eLa~~l--------~is~~-tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 54 LSNHGPINLATLATLL--------GVQPS-ATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp HHHHCSEEHHHHHHHH--------TSCHH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCCCCHHHHHHHh--------CCCHH-HHHHHHHHHHHCCCEEecc
Confidence 4456778888886654 33322 5788999999999998853
No 41
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=22.64 E-value=3e+02 Score=22.09 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=29.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 395 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 395 (429)
.|...|++|..+|.+.. |.+- =.+..++.+|++.|+|.+..
T Consensus 48 ~l~~~~~~t~~ela~~l--------~~~~-~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 48 GLSLTPGATAPQLGAAL--------QMKR-QYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHSTTEEHHHHHHHH--------TCCH-HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhCCCCCHHHHHHHH--------CCCH-HHHHHHHHHHHHCCCeeecC
Confidence 34456778888876554 3332 26889999999999998864
No 42
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=22.30 E-value=1.1e+02 Score=25.25 Aligned_cols=39 Identities=5% Similarity=-0.052 Sum_probs=28.3
Q ss_pred HHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechh
Q 014161 366 IKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLK 405 (429)
Q Consensus 366 L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~ 405 (429)
|.++||+. .-.|.+|+..|+..|+|...++..+.+.+..
T Consensus 41 La~~~~vS-r~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~ 79 (126)
T 3ic7_A 41 YASIVEVN-ANTVMRSYEYLQSQEVIYNKRGIGFFVASGA 79 (126)
T ss_dssp TTTCC-CC-SGGGHHHHHHHHTTTSEEEETTTEEEECTTH
T ss_pred HHHHHCcC-HHHHHHHHHHHHHCCcEEEEcCCccEEccCc
Confidence 34567775 3579999999999999988776555555554
No 43
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=21.41 E-value=79 Score=29.03 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.6
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEec
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVG 403 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avp 403 (429)
|+-|.++||+. .-.|.+|+..|++.|+|.+..+....+.+
T Consensus 32 e~~La~~~~vS-r~tvr~Al~~L~~~g~i~~~~g~G~~V~~ 71 (239)
T 3bwg_A 32 LETLMAQFEVS-KSTITKSLELLEQKGAIFQVRGSGIFVRK 71 (239)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEeCCceEEEec
Confidence 44456778884 56899999999999999887654444443
No 44
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=21.14 E-value=63 Score=29.29 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHhCCcceecHHHHHHHHHHcCeeee--cCC--CceEEechh
Q 014161 365 LIKEEFGESCNFDVDDAVHKLEKLGIVAR--DTI--GRYYCVGLK 405 (429)
Q Consensus 365 wL~~~fg~~vdFdv~dAL~kL~rLgLv~~--d~~--g~~~avpL~ 405 (429)
=|.++||+.-. .|-+||..|+..|||+. .++ +...+.++.
T Consensus 33 ~La~~lgVSRt-pVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~ 76 (239)
T 2di3_A 33 ALSETLGVSRS-SLREALRVLEALGTISTATGSGPRSGTIITAAP 76 (239)
T ss_dssp HHHHHHTCCHH-HHHHHHHHHHHHTSEECCSTTSGGGCCEECCCC
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHCCCeEeecccCCCCCceeeCCc
Confidence 34567888754 79999999999999988 666 445555544
No 45
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=20.89 E-value=98 Score=24.92 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=34.3
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC---CceEEechh
Q 014161 346 ILMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI---GRYYCVGLK 405 (429)
Q Consensus 346 ~Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~---g~~~avpL~ 405 (429)
.|...|++|..+|.+.. |.+-. .|..++.+|++.|+|.+..+ ++...+.+.
T Consensus 45 ~l~~~~~~~~~ela~~l--------~~~~~-tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT 98 (142)
T 2bv6_A 45 ILWDESPVNVKKVVTEL--------ALDTG-TVSPLLKRMEQVDLIKRERSEVDQREVFIHLT 98 (142)
T ss_dssp HHHHSSEEEHHHHHHHT--------TCCTT-THHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred HHHHcCCcCHHHHHHHH--------CCChh-hHHHHHHHHHHCCCEEeecCCCCcceEEEEEC
Confidence 34556778888875544 43322 68999999999999988653 554444443
No 46
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.36 E-value=3.3e+02 Score=21.73 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=29.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecC
Q 014161 347 LMEQGKATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDT 395 (429)
Q Consensus 347 Ll~~g~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~ 395 (429)
|...|++|..+|.+. +|.+-. .+...+.+|++.|+|.+..
T Consensus 40 l~~~~~~t~~eLa~~--------l~~~~~-tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 40 LATEGSRTQKHIGEK--------WSLPKQ-TVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHCSBCHHHHHHH--------HTCCHH-HHHHHHHHHHHTTSEEECC
T ss_pred HHHCCCCCHHHHHHH--------HCCCHH-HHHHHHHHHHHCCCEeecc
Confidence 445677898888644 343332 6889999999999999854
No 47
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=20.30 E-value=1.1e+02 Score=28.14 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEech
Q 014161 363 EELIKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGL 404 (429)
Q Consensus 363 E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL 404 (429)
|+-|.++||+.- -.|-+|+..|++.|+|.+..+....+.+.
T Consensus 36 e~~La~~~~vSr-~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 36 ETALQEIYSSSR-TTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHTTCCH-HHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHCcCH-HHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 455667899864 47999999999999998876544444443
No 48
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=20.23 E-value=1.3e+02 Score=25.56 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHH--HHHHhCCcceecHHHHHHHHHHcCeeeecCCCceEEechhhHHHHHhhhHHH
Q 014161 352 KATRQDLDLRCEEL--IKEEFGESCNFDVDDAVHKLEKLGIVARDTIGRYYCVGLKRSNEIIGTTTEE 417 (429)
Q Consensus 352 ~lT~~~Ld~~~E~w--L~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~g~~~avpL~~A~~~l~~~w~~ 417 (429)
+.+.++|...+|.. +.+.++..+.|.+++-... .--.++..+++..+.=+|.+++++++...|+.
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~-~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e~ 100 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNE-YYVKVIEDSTNEVIREIPPKRWLDFYAAMTEF 100 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTE-EEEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCc-EEEEEEECCCCcEEEeCChHHHHHHHHHHHHh
Confidence 37889998777643 2234788999999985321 11124445555678999999999999998864
No 49
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.02 E-value=1.5e+02 Score=26.19 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCcceecHHHHHHHHHHcCeeeecCC
Q 014161 333 IQQEVKEVIISFFILMEQG-KATRQDLDLRCEELIKEEFGESCNFDVDDAVHKLEKLGIVARDTI 396 (429)
Q Consensus 333 eeQe~KEaiLAY~~Ll~~g-~lT~~~Ld~~~E~wL~~~fg~~vdFdv~dAL~kL~rLgLv~~d~~ 396 (429)
.|+++.|.|+.| +.++| +.|..||. +.+|.+-. .+.+.|..|++.|++.++..
T Consensus 6 ~q~~il~~I~~~--~~~~g~~~s~~eia--------~~lgl~~~-tv~~~l~~Le~~G~i~~~~~ 59 (196)
T 3k2z_A 6 RQRKVLLFIEEF--IEKNGYPPSVREIA--------RRFRITPR-GALLHLIALEKKGYIERKNG 59 (196)
T ss_dssp HHHHHHHHHHHH--HHHHSSCCCHHHHH--------HHHTSCHH-HHHHHHHHHHHTTSEECC--
T ss_pred HHHHHHHHHHHH--HHHhCCCCCHHHHH--------HHcCCCcH-HHHHHHHHHHHCCCEEecCC
Confidence 466777777654 33455 47877764 45677755 79999999999999988754
Done!