BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014163
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|B Chain B, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|C Chain C, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|D Chain D, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|E Chain E, Crystal Structure Of Gad1 From Arabidopsis Thaliana
pdb|3HBX|F Chain F, Crystal Structure Of Gad1 From Arabidopsis Thaliana
Length = 502
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/424 (76%), Positives = 365/424 (86%), Gaps = 5/424 (1%)
Query: 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
MV+S ++S + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXX 180
VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYF
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 XXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
GYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGH YGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHXYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360
+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC N LREGLEK
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360
Query: 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQ-KLPMSYPWSTK 419
T RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR R+ + P +P + T
Sbjct: 361 TERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR----RYGWIVPAYTMPPNAQHITV 416
Query: 420 LRVI 423
LRV+
Sbjct: 417 LRVV 420
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/395 (46%), Positives = 249/395 (63%), Gaps = 7/395 (1%)
Query: 8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
TD R E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F T
Sbjct: 7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
W + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GS
Sbjct: 67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
SEA ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
M+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366
LG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365
Query: 367 LSK---DVGVPLVAFSLKDSS--AHTVFEISEGLR 396
+ D G+P V F LKD +T++++SE LR
Sbjct: 366 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR 400
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/395 (46%), Positives = 249/395 (63%), Gaps = 7/395 (1%)
Query: 8 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTT 66
TD R E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F T
Sbjct: 7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQT 66
Query: 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
W + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GS
Sbjct: 67 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS 126
Query: 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXG 186
SEA ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G
Sbjct: 127 SEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 185
Query: 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA 246
M+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAA
Sbjct: 186 QLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA 245
Query: 247 SGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306
SGGF+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++Y
Sbjct: 246 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 305
Query: 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366
LG TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E
Sbjct: 306 LGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 365
Query: 367 LSK---DVGVPLVAFSLKDSS--AHTVFEISEGLR 396
+ D G+P V F LKD +T++++SE LR
Sbjct: 366 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR 400
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 177/386 (45%), Positives = 243/386 (62%), Gaps = 6/386 (1%)
Query: 16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW + KL
Sbjct: 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76 VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA ML G+
Sbjct: 62 MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKA 195
A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G M+P +
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
+E DENTI V G T TG +E + LHD L K +TG D +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++YLG TF
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVG 372
+NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 360
Query: 373 VPLVAFSLKDSS--AHTVFEISEGLR 396
+P V F LKD +T++++SE LR
Sbjct: 361 IPAVCFKLKDGEDPGYTLYDLSERLR 386
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 127/324 (39%), Gaps = 19/324 (5%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGXPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ HKYG G +++R D L + ++ G + T
Sbjct: 292 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V +
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWV--I 409
Query: 377 AFSLKDSSAHTVFEISEGLRKKLN 400
A + + + + V E G +LN
Sbjct: 410 AVASDELNIYQVMEEMAGRGWRLN 433
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 127/324 (39%), Gaps = 19/324 (5%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ HKYG G +++R D L + ++ G + T
Sbjct: 296 PVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V +
Sbjct: 356 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWV--I 413
Query: 377 AFSLKDSSAHTVFEISEGLRKKLN 400
A + + + + V E G +LN
Sbjct: 414 AVASDELNIYQVMEEMAGRGWRLN 437
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 126/324 (38%), Gaps = 19/324 (5%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ H YG G +++R D L + ++ G + T
Sbjct: 292 PVPPFDFRLEGVTSVSADTHAYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V +
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWV--I 409
Query: 377 AFSLKDSSAHTVFEISEGLRKKLN 400
A + + + + V E G +LN
Sbjct: 410 AVASDELNIYQVMEEMAGRGWRLN 433
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 126/324 (38%), Gaps = 19/324 (5%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 129 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 186
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 187 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 241
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 242 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 295
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ H YG G +++R D L + ++ G + T
Sbjct: 296 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 355
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V +
Sbjct: 356 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWV--I 413
Query: 377 AFSLKDSSAHTVFEISEGLRKKLN 400
A + + + + V E G +LN
Sbjct: 414 AVASDELNIYQVMEEMAGRGWRLN 437
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 126/324 (38%), Gaps = 19/324 (5%)
Query: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140
N + D +P T + + V M AH+ A T G T G +E+++LA + R
Sbjct: 125 QSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAG-GTVCGTVTSGGTESLLLA-MKTYRD 182
Query: 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVD 200
W + K P V + ++K A+YF Y + E +
Sbjct: 183 WARATKG----ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRA-DVAAMREAIT 237
Query: 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----Y 256
NT+ VA G + + + L + HVDA GGFI P+ Y
Sbjct: 238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHVDACLGGFILPWAERLGY 291
Query: 257 PDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316
P +DFRL V S++ H YG G +++R D L + ++ G + T
Sbjct: 292 PVPPFDFRLEGVTSVSADTHXYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTF 351
Query: 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLV 376
S+ + + + LG EGY + + A L+ G+ +IL + V +
Sbjct: 352 AGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWV--I 409
Query: 377 AFSLKDSSAHTVFEISEGLRKKLN 400
A + + + + V E G +LN
Sbjct: 410 AVASDELNIYQVMEEMAGRGWRLN 433
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 151/342 (44%), Gaps = 31/342 (9%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
N + D +P ++++ V+M+ +FN P T G T G +E+++LA L+ K
Sbjct: 95 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
R +P I+ ++K A YF Y ++ K + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
T+ + + G +D++ L + K + P+HVD+ G FI F+ Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
L DFR+P V SI+ HKYG G +++R D + + + G + TL
Sbjct: 261 LPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVP-- 374
S+ + ++ + + +G GY + +G A ++ +++ I D+ G P
Sbjct: 321 GSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN----IPDLDIMGNPRY 376
Query: 375 -LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVY-PQKLPMSY 414
+++FS K + H E+S+ L KK F + P L M++
Sbjct: 377 SVISFSSKTLNIH---ELSDRLSKKGWHFNALQKPVALHMAF 415
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 150/342 (43%), Gaps = 31/342 (9%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142
N + D +P ++++ V+M+ +FN P T G T G +E+++LA L+ K
Sbjct: 95 NQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDEN 202
R +P I+ ++K A YF Y ++ K + +++N
Sbjct: 152 HHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Query: 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL----YPD 258
T+ + + G +D++ L + K + P+HVD+ G FI F+ Y +
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSFMEKAGYKN 260
Query: 259 LEW-DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLN 317
L DFR+P V SI+ H YG G +++R D + + + G + TL
Sbjct: 261 LPLLDFRVPGVTSISCDTHXYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLA 320
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVP-- 374
S+ + ++ + + +G GY + +G A ++ +++ I D+ G P
Sbjct: 321 GSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN----IPDLDIMGNPRY 376
Query: 375 -LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVY-PQKLPMSY 414
+++FS K + H E+S+ L KK F + P L M++
Sbjct: 377 SVISFSSKTLNIH---ELSDRLSKKGWHFNALQKPVALHMAF 415
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 122/320 (38%), Gaps = 63/320 (19%)
Query: 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129
P K+V + N D + T L+ + V ++ L N +K A G G +EA
Sbjct: 44 PITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN-----NKDAYGHIVSGGTEA 98
Query: 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYV 189
+ A K W++KR++ + P I+ +EK Y+
Sbjct: 99 NLXALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLE----------YI 148
Query: 190 MNPVKAVELVDENTI----------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
P+K +DE + + I G+T G ++++ L + + N
Sbjct: 149 YAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENN------I 202
Query: 240 PIHVDAASGGFIAPFLYP-------DLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292
IHVDAA GG + PFL + ++DF L V SI + HK G G ++++
Sbjct: 203 YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLG-VDSITIDPHKXGHCPIPSGGILFKD 261
Query: 293 KDDLPDELVFHINYLGSDQPTFT-----------LNFSKGSSQIIAQYYQFIRLGFEGYK 341
+ + YL D P T + F + + +Y LG EG +
Sbjct: 262 --------IGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY-----LGREGQR 308
Query: 342 NIMENCMGNARALREGLEKT 361
I+ C N L + L++
Sbjct: 309 KIVNECXENTLYLYKKLKEN 328
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256
+LVDE+T V+ + + G + V+ + ++ KKN+E T +HVDA PF
Sbjct: 134 KLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKE----TLVHVDAVQTIGKIPFSL 189
Query: 257 PDLEWDFRLPLVKSINVSGHKY 278
LE D+ + S HK+
Sbjct: 190 EKLEVDY-------ASFSAHKF 204
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 197 ELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256
+LVDE+T V+ + G + V+ + ++ KKN+E T +HVDA PF
Sbjct: 134 KLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKE----TLVHVDAVQTIGKIPFSL 189
Query: 257 PDLEWDFRLPLVKSINVSGHKY 278
LE D+ + S HK+
Sbjct: 190 EKLEVDY-------ASFSAHKF 204
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNI 343
V W T+ DL D+ V +IN LGS D T G I AQ + G Y +I
Sbjct: 110 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI 167
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNI 343
V W T+ DL D+ V +IN LGS D T G I AQ + G Y +I
Sbjct: 110 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI 167
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 288 VVWRTKDDLPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNI 343
V W T+ DL D+ V +IN LGS D T G I AQ + G Y +I
Sbjct: 106 VNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,668,230
Number of Sequences: 62578
Number of extensions: 529984
Number of successful extensions: 1095
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 18
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)