Query 014163
Match_columns 429
No_of_seqs 266 out of 2704
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbx_A GAD 1, glutamate decarb 100.0 4.4E-55 1.5E-59 441.8 46.0 422 1-426 1-423 (502)
2 2dgk_A GAD-beta, GADB, glutama 100.0 2.6E-49 8.7E-54 395.4 43.1 407 16-427 2-414 (452)
3 3k40_A Aromatic-L-amino-acid d 100.0 4.9E-49 1.7E-53 394.9 36.6 393 14-428 29-451 (475)
4 4e1o_A HDC, histidine decarbox 100.0 9.3E-49 3.2E-53 393.8 36.1 394 14-428 34-458 (481)
5 3vp6_A Glutamate decarboxylase 100.0 2E-46 6.8E-51 379.2 36.9 395 16-428 51-485 (511)
6 1js3_A DDC;, DOPA decarboxylas 100.0 3.3E-45 1.1E-49 369.0 34.6 393 14-427 29-453 (486)
7 2okj_A Glutamate decarboxylase 100.0 2.7E-43 9.2E-48 356.5 36.7 396 14-427 46-481 (504)
8 2qma_A Diaminobutyrate-pyruvat 100.0 1.2E-42 4E-47 351.2 37.2 389 17-426 58-474 (497)
9 2jis_A Cysteine sulfinic acid 100.0 6.2E-42 2.1E-46 347.3 36.3 392 14-426 65-493 (515)
10 3mc6_A Sphingosine-1-phosphate 100.0 2.8E-38 9.4E-43 319.4 34.4 365 31-425 37-416 (497)
11 3f9t_A TDC, L-tyrosine decarbo 100.0 1.2E-35 4.3E-40 290.4 39.1 362 31-425 4-376 (397)
12 3mad_A Sphingosine-1-phosphate 100.0 8E-36 2.8E-40 302.5 37.0 367 31-426 70-447 (514)
13 2z67_A O-phosphoseryl-tRNA(SEC 100.0 2.2E-32 7.4E-37 273.0 21.7 331 24-404 50-406 (456)
14 1wyu_B Glycine dehydrogenase s 100.0 4E-28 1.4E-32 243.3 33.9 358 30-426 40-420 (474)
15 4hvk_A Probable cysteine desul 100.0 2.6E-28 8.9E-33 237.1 29.8 299 67-409 11-318 (382)
16 3bc8_A O-phosphoseryl-tRNA(SEC 100.0 7.2E-30 2.5E-34 248.8 16.4 305 25-370 16-349 (450)
17 3nnk_A Ureidoglycine-glyoxylat 100.0 3.1E-28 1.1E-32 239.4 27.4 323 55-424 11-366 (411)
18 4eb5_A Probable cysteine desul 100.0 1E-27 3.4E-32 233.3 29.9 299 67-409 11-318 (382)
19 3isl_A Purine catabolism prote 100.0 5.4E-28 1.9E-32 238.0 27.1 293 90-425 39-367 (416)
20 1elu_A L-cysteine/L-cystine C- 100.0 7.7E-28 2.6E-32 234.8 27.7 312 67-425 27-370 (390)
21 2yrr_A Aminotransferase, class 100.0 5.8E-28 2E-32 232.2 24.4 311 67-425 10-330 (353)
22 2dr1_A PH1308 protein, 386AA l 100.0 1.6E-27 5.4E-32 232.2 27.1 314 65-425 28-357 (386)
23 3dzz_A Putative pyridoxal 5'-p 100.0 2E-27 7E-32 232.0 26.9 332 54-427 26-371 (391)
24 1t3i_A Probable cysteine desul 100.0 4.1E-27 1.4E-31 232.0 28.3 332 57-426 29-392 (420)
25 3zrp_A Serine-pyruvate aminotr 100.0 5.9E-28 2E-32 235.0 21.9 311 66-425 11-341 (384)
26 1vjo_A Alanine--glyoxylate ami 100.0 3.5E-27 1.2E-31 230.7 27.4 312 65-424 42-371 (393)
27 2z9v_A Aspartate aminotransfer 100.0 2.9E-27 9.8E-32 231.1 26.8 312 65-424 17-347 (392)
28 2huf_A Alanine glyoxylate amin 100.0 4.7E-27 1.6E-31 229.6 27.0 311 67-424 29-359 (393)
29 3lvm_A Cysteine desulfurase; s 100.0 3.2E-26 1.1E-30 226.0 32.7 296 64-396 30-337 (423)
30 1eg5_A Aminotransferase; PLP-d 100.0 7.9E-26 2.7E-30 219.9 34.9 298 67-408 12-320 (384)
31 3cai_A Possible aminotransfera 100.0 2.9E-27 9.9E-32 232.2 24.5 323 65-426 35-388 (406)
32 3kgw_A Alanine-glyoxylate amin 100.0 7.5E-27 2.6E-31 227.9 26.1 313 65-424 31-364 (393)
33 3vax_A Putative uncharacterize 100.0 5.5E-27 1.9E-31 229.7 24.4 303 66-408 30-343 (400)
34 3g0t_A Putative aminotransfera 100.0 1.4E-26 4.8E-31 229.6 27.4 349 39-426 28-417 (437)
35 1kmj_A Selenocysteine lyase; p 100.0 1.5E-26 5E-31 226.8 26.8 328 59-426 26-384 (406)
36 3ffr_A Phosphoserine aminotran 100.0 4.7E-27 1.6E-31 226.8 22.8 312 67-426 14-343 (362)
37 1iug_A Putative aspartate amin 100.0 5.5E-27 1.9E-31 225.5 23.2 310 66-426 10-327 (352)
38 4dq6_A Putative pyridoxal phos 100.0 1.7E-26 5.9E-31 225.4 26.6 327 55-427 32-375 (391)
39 1wyu_A Glycine dehydrogenase ( 100.0 8.7E-26 3E-30 224.2 31.9 342 29-425 38-418 (438)
40 2ch1_A 3-hydroxykynurenine tra 100.0 2.9E-26 9.8E-31 224.3 27.6 311 67-424 28-359 (396)
41 3h14_A Aminotransferase, class 99.9 1.1E-25 3.8E-30 219.9 29.2 339 40-426 17-363 (391)
42 1j32_A Aspartate aminotransfer 99.9 2E-26 6.7E-31 225.0 23.3 327 53-426 28-368 (388)
43 3f0h_A Aminotransferase; RER07 99.9 3.5E-26 1.2E-30 222.1 24.7 312 67-425 29-352 (376)
44 1m32_A 2-aminoethylphosphonate 99.9 6.2E-26 2.1E-30 219.1 26.0 316 65-426 12-344 (366)
45 1u08_A Hypothetical aminotrans 99.9 6.1E-26 2.1E-30 221.4 26.1 330 57-426 32-371 (386)
46 1b5p_A Protein (aspartate amin 99.9 1.1E-25 3.7E-30 219.7 27.4 325 54-426 30-366 (385)
47 3nra_A Aspartate aminotransfer 99.9 1.2E-26 4.1E-31 227.9 20.2 327 57-426 41-386 (407)
48 3e9k_A Kynureninase; kynurenin 99.9 2.1E-26 7.2E-31 230.4 22.2 289 92-424 108-437 (465)
49 3kax_A Aminotransferase, class 99.9 9.8E-26 3.4E-30 219.4 25.7 328 55-427 24-367 (383)
50 1xi9_A Putative transaminase; 99.9 6.5E-26 2.2E-30 222.8 24.5 332 53-426 36-384 (406)
51 1rv3_A Serine hydroxymethyltra 99.9 9.3E-26 3.2E-30 226.5 25.7 345 41-425 31-405 (483)
52 1o4s_A Aspartate aminotransfer 99.9 6.7E-26 2.3E-30 221.5 23.6 324 53-426 39-370 (389)
53 3l8a_A METC, putative aminotra 99.9 1.1E-25 3.7E-30 222.3 25.1 331 54-427 60-404 (421)
54 3e77_A Phosphoserine aminotran 99.9 2.1E-26 7.2E-31 222.0 19.2 316 66-426 22-354 (377)
55 3dyd_A Tyrosine aminotransfera 99.9 3.7E-25 1.3E-29 219.0 28.7 334 55-426 54-405 (427)
56 1gd9_A Aspartate aminotransfer 99.9 8.5E-26 2.9E-30 220.5 23.8 328 57-426 28-367 (389)
57 2o0r_A RV0858C (N-succinyldiam 99.9 1.4E-25 4.9E-30 220.7 25.2 330 57-426 27-377 (411)
58 3ele_A Amino transferase; RER0 99.9 9.9E-26 3.4E-30 220.8 23.2 326 56-426 36-377 (398)
59 2x5d_A Probable aminotransfera 99.9 3.3E-25 1.1E-29 218.2 26.4 331 53-426 35-379 (412)
60 2dou_A Probable N-succinyldiam 99.9 3.3E-25 1.1E-29 215.4 25.8 329 53-426 23-359 (376)
61 2bkw_A Alanine-glyoxylate amin 99.9 1.1E-25 3.8E-30 219.1 21.6 319 67-425 15-359 (385)
62 1bw0_A TAT, protein (tyrosine 99.9 7.2E-25 2.5E-29 215.9 27.4 331 57-426 35-394 (416)
63 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 7.3E-26 2.5E-30 219.4 18.9 307 67-426 20-348 (371)
64 3ftb_A Histidinol-phosphate am 99.9 2.1E-24 7E-29 208.4 29.0 312 54-427 25-344 (361)
65 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 5.5E-26 1.9E-30 218.3 17.6 339 25-404 34-400 (501)
66 3b46_A Aminotransferase BNA3; 99.9 2E-25 6.7E-30 222.2 22.4 335 53-426 55-428 (447)
67 2gb3_A Aspartate aminotransfer 99.9 2.2E-25 7.7E-30 219.2 22.3 325 54-426 42-383 (409)
68 2zc0_A Alanine glyoxylate tran 99.9 7.3E-25 2.5E-29 215.2 25.8 328 54-426 33-384 (407)
69 1c7n_A Cystalysin; transferase 99.9 6.6E-25 2.2E-29 215.0 25.2 328 57-427 33-375 (399)
70 3fdb_A Beta C-S lyase, putativ 99.9 4.6E-25 1.6E-29 214.2 23.4 329 53-427 21-358 (377)
71 2z61_A Probable aspartate amin 99.9 7.1E-25 2.4E-29 212.6 23.9 317 54-426 28-352 (370)
72 1d2f_A MALY protein; aminotran 99.9 1.5E-24 5.1E-29 211.9 25.9 327 58-427 31-371 (390)
73 1v2d_A Glutamine aminotransfer 99.9 1.3E-24 4.5E-29 211.5 25.2 313 58-426 28-352 (381)
74 1yiz_A Kynurenine aminotransfe 99.9 1.8E-24 6.1E-29 214.1 26.5 329 58-426 40-410 (429)
75 3aow_A Putative uncharacterize 99.9 1.9E-24 6.7E-29 215.0 26.8 325 57-426 78-425 (448)
76 2w8t_A SPT, serine palmitoyltr 99.9 2.9E-24 1E-28 212.5 27.6 315 59-426 68-394 (427)
77 3get_A Histidinol-phosphate am 99.9 1.3E-24 4.4E-29 210.3 24.5 312 56-426 31-349 (365)
78 3ly1_A Putative histidinol-pho 99.9 2.8E-24 9.6E-29 207.0 26.6 310 54-427 15-335 (354)
79 1qz9_A Kynureninase; kynurenin 99.9 2.6E-24 8.9E-29 211.8 27.0 310 67-425 39-379 (416)
80 3euc_A Histidinol-phosphate am 99.9 5.2E-25 1.8E-29 213.2 21.5 313 58-427 33-351 (367)
81 2o1b_A Aminotransferase, class 99.9 8.2E-25 2.8E-29 214.9 23.2 327 55-426 47-384 (404)
82 3a9z_A Selenocysteine lyase; P 99.9 8.1E-25 2.8E-29 216.7 23.3 306 65-395 27-364 (432)
83 3a2b_A Serine palmitoyltransfe 99.9 4.7E-25 1.6E-29 216.0 20.6 315 57-426 45-371 (398)
84 3jtx_A Aminotransferase; NP_28 99.9 1.6E-24 5.3E-29 212.0 24.1 332 53-426 28-379 (396)
85 3ffh_A Histidinol-phosphate am 99.9 1.2E-23 4E-28 203.4 28.9 315 56-427 33-349 (363)
86 3tqx_A 2-amino-3-ketobutyrate 99.9 6.3E-25 2.2E-29 214.9 20.1 312 58-425 46-374 (399)
87 1vp4_A Aminotransferase, putat 99.9 1.4E-24 4.6E-29 214.7 22.1 325 57-426 45-398 (425)
88 3qm2_A Phosphoserine aminotran 99.9 9.8E-26 3.4E-30 218.6 13.1 315 62-426 32-364 (386)
89 3cq5_A Histidinol-phosphate am 99.9 2.4E-23 8.3E-28 201.8 29.6 308 60-426 35-350 (369)
90 1v72_A Aldolase; PLP-dependent 99.9 2.2E-24 7.5E-29 207.6 22.0 305 59-425 11-331 (356)
91 1svv_A Threonine aldolase; str 99.9 3.1E-24 1.1E-28 206.7 21.9 299 66-425 24-336 (359)
92 1b9h_A AHBA synthase, protein 99.9 1.2E-23 4.3E-28 205.2 26.4 297 69-410 16-323 (388)
93 2zyj_A Alpha-aminodipate amino 99.9 2.3E-24 8E-29 211.0 21.1 315 58-426 35-373 (397)
94 2fnu_A Aminotransferase; prote 99.9 5.8E-24 2E-28 206.3 23.4 296 66-408 9-314 (375)
95 2a7v_A Serine hydroxymethyltra 99.9 9.5E-24 3.3E-28 210.4 25.3 317 65-424 63-414 (490)
96 3ke3_A Putative serine-pyruvat 99.9 7.4E-24 2.5E-28 206.3 22.9 291 90-425 30-354 (379)
97 3ezs_A Aminotransferase ASPB; 99.9 1.6E-23 5.3E-28 203.5 24.8 320 53-426 22-356 (376)
98 3e2y_A Kynurenine-oxoglutarate 99.9 7E-24 2.4E-28 208.3 22.2 331 56-426 24-394 (410)
99 2dkj_A Serine hydroxymethyltra 99.9 5E-24 1.7E-28 209.1 21.1 336 40-425 9-362 (407)
100 1lc5_A COBD, L-threonine-O-3-p 99.9 3.9E-23 1.3E-27 200.0 26.9 310 56-426 25-342 (364)
101 2c0r_A PSAT, phosphoserine ami 99.9 9.9E-24 3.4E-28 203.9 22.7 309 65-426 12-340 (362)
102 3op7_A Aminotransferase class 99.9 1.8E-23 6.2E-28 203.0 23.8 301 75-427 47-353 (375)
103 3dr4_A Putative perosamine syn 99.9 7.4E-24 2.5E-28 207.0 21.1 293 70-409 36-337 (391)
104 3fvs_A Kynurenine--oxoglutarat 99.9 5.3E-24 1.8E-28 210.1 20.2 331 56-426 29-403 (422)
105 1fg7_A Histidinol phosphate am 99.9 5.1E-23 1.7E-27 198.6 26.0 271 99-427 62-341 (356)
106 1fc4_A 2-amino-3-ketobutyrate 99.9 9.6E-24 3.3E-28 206.8 20.8 317 54-425 44-375 (401)
107 2vi8_A Serine hydroxymethyltra 99.9 2.3E-23 8E-28 204.2 23.4 309 69-426 36-362 (405)
108 1bs0_A Protein (8-amino-7-oxon 99.9 1E-23 3.5E-28 205.4 20.6 317 56-426 40-366 (384)
109 3tcm_A Alanine aminotransferas 99.9 3E-23 1E-27 209.2 24.6 317 71-426 110-475 (500)
110 3m5u_A Phosphoserine aminotran 99.9 3.5E-24 1.2E-28 205.8 16.5 309 64-426 12-339 (361)
111 2c81_A Glutamine-2-deoxy-scyll 99.9 3.7E-23 1.3E-27 203.9 23.7 300 69-409 15-341 (418)
112 3piu_A 1-aminocyclopropane-1-c 99.9 4.8E-23 1.6E-27 204.2 24.5 335 52-426 33-412 (435)
113 3hdo_A Histidinol-phosphate am 99.9 5.3E-23 1.8E-27 198.7 23.7 305 58-427 29-338 (360)
114 3frk_A QDTB; aminotransferase, 99.9 6.2E-24 2.1E-28 206.2 17.1 290 69-410 16-310 (373)
115 3qgu_A LL-diaminopimelate amin 99.9 1.9E-22 6.5E-27 200.7 28.1 325 53-426 67-421 (449)
116 1iay_A ACC synthase 2, 1-amino 99.9 1.1E-22 3.7E-27 201.2 25.7 290 91-425 83-406 (428)
117 3n0l_A Serine hydroxymethyltra 99.9 1.6E-22 5.5E-27 199.0 26.7 310 68-425 37-363 (417)
118 3kki_A CAI-1 autoinducer synth 99.9 5.3E-23 1.8E-27 202.2 23.0 302 68-425 74-382 (409)
119 2r2n_A Kynurenine/alpha-aminoa 99.9 3.5E-22 1.2E-26 197.4 28.0 299 87-425 74-403 (425)
120 3ju7_A Putative PLP-dependent 99.9 1.7E-22 5.9E-27 196.3 24.2 295 69-410 15-319 (377)
121 3p1t_A Putative histidinol-pho 99.9 3.5E-22 1.2E-26 190.9 25.6 298 58-426 19-319 (337)
122 2x3l_A ORN/Lys/Arg decarboxyla 99.9 2.4E-23 8.1E-28 206.8 17.7 269 97-426 59-333 (446)
123 3ei9_A LL-diaminopimelate amin 99.9 2.5E-22 8.6E-27 198.8 24.9 337 39-427 39-410 (432)
124 1w23_A Phosphoserine aminotran 99.9 2.4E-23 8.2E-28 200.9 17.0 310 67-426 13-339 (360)
125 3uwc_A Nucleotide-sugar aminot 99.9 1.7E-23 5.7E-28 203.1 15.9 299 56-410 7-313 (374)
126 3fkd_A L-threonine-O-3-phospha 99.9 1.4E-22 4.7E-27 195.0 21.6 306 54-427 14-325 (350)
127 2fyf_A PSAT, phosphoserine ami 99.9 9.3E-23 3.2E-27 199.7 20.6 308 65-425 48-376 (398)
128 2oga_A Transaminase; PLP-depen 99.9 5.3E-23 1.8E-27 201.6 18.7 302 56-409 31-337 (399)
129 2x5f_A Aspartate_tyrosine_phen 99.9 7.4E-23 2.5E-27 202.5 19.8 320 57-425 49-408 (430)
130 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.2E-21 4.2E-26 191.2 28.2 302 67-409 12-335 (390)
131 3g7q_A Valine-pyruvate aminotr 99.9 1.3E-22 4.4E-27 199.8 21.0 334 55-426 31-394 (417)
132 2po3_A 4-dehydrase; external a 99.9 7.4E-22 2.5E-26 195.0 25.8 300 60-409 21-329 (424)
133 1mdo_A ARNB aminotransferase; 99.9 4.4E-22 1.5E-26 194.3 23.6 289 70-409 20-329 (393)
134 3if2_A Aminotransferase; YP_26 99.9 4.1E-22 1.4E-26 198.0 23.6 335 56-426 32-421 (444)
135 3t18_A Aminotransferase class 99.9 2.1E-22 7.2E-27 198.1 21.0 320 55-426 37-393 (413)
136 3ihj_A Alanine aminotransferas 99.9 4E-22 1.4E-26 200.7 22.6 302 85-426 123-474 (498)
137 4f4e_A Aromatic-amino-acid ami 99.9 2.6E-22 8.9E-27 198.0 20.8 322 56-426 50-402 (420)
138 2cb1_A O-acetyl homoserine sul 99.9 3.7E-21 1.3E-25 189.3 28.8 257 97-406 58-352 (412)
139 1jg8_A L-ALLO-threonine aldola 99.9 4.7E-23 1.6E-27 197.8 14.6 304 60-425 8-324 (347)
140 3nyt_A Aminotransferase WBPE; 99.9 2.5E-22 8.5E-27 194.5 19.7 288 70-410 16-309 (367)
141 3rq1_A Aminotransferase class 99.9 1.5E-22 5.2E-27 199.5 18.0 320 54-425 37-394 (418)
142 3lws_A Aromatic amino acid bet 99.9 1.7E-22 5.8E-27 194.8 17.9 284 89-426 45-335 (357)
143 3gbx_A Serine hydroxymethyltra 99.9 1.1E-21 3.9E-26 193.0 23.9 311 68-425 42-370 (420)
144 3ecd_A Serine hydroxymethyltra 99.9 2E-21 6.8E-26 191.6 25.4 310 68-424 44-370 (425)
145 3qhx_A Cystathionine gamma-syn 99.9 1.5E-21 5.2E-26 190.7 23.8 251 97-407 68-340 (392)
146 3b1d_A Betac-S lyase; HET: PLP 99.8 7.2E-25 2.4E-29 214.4 0.0 328 56-427 32-375 (392)
147 1o69_A Aminotransferase; struc 99.9 1.2E-21 4.2E-26 191.6 23.0 291 70-409 12-331 (394)
148 2vyc_A Biodegradative arginine 99.9 8E-22 2.7E-26 206.7 22.9 281 99-425 209-583 (755)
149 2bwn_A 5-aminolevulinate synth 99.9 7.3E-22 2.5E-26 193.5 21.0 305 68-425 61-378 (401)
150 3ez1_A Aminotransferase MOCR f 99.9 1.1E-21 3.7E-26 193.7 22.3 325 56-426 26-395 (423)
151 3pj0_A LMO0305 protein; struct 99.9 3.7E-22 1.3E-26 192.5 18.3 304 69-426 28-338 (359)
152 1e5e_A MGL, methionine gamma-l 99.9 2.1E-21 7.3E-26 190.4 24.0 249 97-407 64-335 (404)
153 3fsl_A Aromatic-amino-acid ami 99.9 7.5E-22 2.6E-26 193.0 20.7 320 57-426 28-380 (397)
154 1c4k_A Protein (ornithine deca 99.9 7.5E-22 2.6E-26 205.2 20.8 238 99-369 177-447 (730)
155 3ppl_A Aspartate aminotransfer 99.9 1.2E-21 4E-26 193.7 21.0 323 57-426 35-400 (427)
156 2rfv_A Methionine gamma-lyase; 99.9 3.3E-21 1.1E-25 188.8 23.4 256 94-408 63-340 (398)
157 3ndn_A O-succinylhomoserine su 99.9 5.6E-21 1.9E-25 187.7 25.1 256 96-407 82-359 (414)
158 1qgn_A Protein (cystathionine 99.9 1.2E-20 4E-25 186.6 27.4 231 96-382 115-368 (445)
159 3ri6_A O-acetylhomoserine sulf 99.9 4.3E-21 1.5E-25 189.1 23.1 258 99-406 86-374 (430)
160 3h7f_A Serine hydroxymethyltra 99.9 1.4E-20 4.9E-25 187.0 27.0 311 67-424 56-387 (447)
161 1gc0_A Methionine gamma-lyase; 99.9 5.7E-21 2E-25 187.1 23.5 231 96-381 66-319 (398)
162 3asa_A LL-diaminopimelate amin 99.9 3.8E-21 1.3E-25 188.4 21.5 330 39-424 16-372 (400)
163 1uu1_A Histidinol-phosphate am 99.9 4.2E-21 1.4E-25 183.5 20.2 291 60-426 24-320 (335)
164 3ruy_A Ornithine aminotransfer 99.9 1.3E-20 4.4E-25 184.0 23.9 299 68-424 53-371 (392)
165 3d6k_A Putative aminotransfera 99.9 1.3E-20 4.6E-25 185.9 23.3 325 57-425 34-397 (422)
166 3acz_A Methionine gamma-lyase; 99.9 4.1E-20 1.4E-24 180.4 26.1 248 97-408 61-330 (389)
167 1ajs_A Aspartate aminotransfer 99.9 3.6E-21 1.2E-25 189.2 18.5 325 54-425 29-390 (412)
168 2aeu_A Hypothetical protein MJ 99.9 3E-20 1E-24 180.4 24.6 317 43-426 15-349 (374)
169 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.6E-20 5.4E-25 187.2 23.0 295 86-426 70-409 (456)
170 2fq6_A Cystathionine beta-lyas 99.9 2.3E-20 8E-25 183.2 22.0 228 99-382 86-337 (415)
171 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 3.5E-20 1.2E-24 183.7 23.2 302 68-410 41-377 (437)
172 2ctz_A O-acetyl-L-homoserine s 99.9 5.1E-20 1.7E-24 181.6 24.1 260 98-406 61-365 (421)
173 1ax4_A Tryptophanase; tryptoph 99.9 4E-20 1.4E-24 184.8 23.6 314 70-425 55-418 (467)
174 1vef_A Acetylornithine/acetyl- 99.9 2.9E-20 1E-24 181.6 20.5 301 68-425 62-375 (395)
175 1cs1_A CGS, protein (cystathio 99.9 1.7E-19 5.8E-24 175.8 25.7 247 99-408 56-324 (386)
176 7aat_A Aspartate aminotransfer 99.9 1.1E-20 3.7E-25 185.1 17.0 322 53-425 25-382 (401)
177 1yaa_A Aspartate aminotransfer 99.8 4.5E-21 1.5E-25 188.5 14.2 322 54-425 28-390 (412)
178 2q7w_A Aspartate aminotransfer 99.8 9.7E-21 3.3E-25 185.0 16.0 315 56-425 27-378 (396)
179 2ord_A Acoat, acetylornithine 99.8 1.7E-19 5.8E-24 176.4 24.4 297 68-425 57-375 (397)
180 3meb_A Aspartate aminotransfer 99.8 8E-20 2.7E-24 181.7 22.3 323 52-426 45-424 (448)
181 3f6t_A Aspartate aminotransfer 99.8 2.9E-20 9.8E-25 188.6 19.1 215 58-293 106-330 (533)
182 2eh6_A Acoat, acetylornithine 99.8 1.5E-19 5E-24 175.3 23.1 309 55-425 28-356 (375)
183 1pff_A Methionine gamma-lyase; 99.8 1.2E-19 4E-24 173.1 21.0 246 99-408 2-271 (331)
184 1ibj_A CBL, cystathionine beta 99.8 5.5E-20 1.9E-24 183.0 19.2 156 96-292 134-295 (464)
185 3jzl_A Putative cystathionine 99.8 7.4E-20 2.5E-24 178.9 19.6 249 99-404 63-340 (409)
186 4adb_A Succinylornithine trans 99.8 4E-19 1.4E-23 174.1 24.0 302 68-424 56-377 (406)
187 2ay1_A Aroat, aromatic amino a 99.8 3.7E-20 1.3E-24 180.8 16.5 320 56-425 27-375 (394)
188 3i16_A Aluminum resistance pro 99.8 3.2E-19 1.1E-23 175.0 22.0 245 99-396 77-353 (427)
189 3k7y_A Aspartate aminotransfer 99.8 1.6E-19 5.6E-24 176.6 19.8 315 55-426 29-385 (405)
190 3cog_A Cystathionine gamma-lya 99.8 5.3E-19 1.8E-23 173.2 22.7 249 91-407 67-338 (403)
191 2pb2_A Acetylornithine/succiny 99.8 1.1E-18 3.6E-23 172.2 24.7 300 68-424 74-395 (420)
192 3nmy_A Xometc, cystathionine g 99.8 3.7E-19 1.3E-23 173.9 20.5 228 99-382 71-322 (400)
193 3n75_A LDC, lysine decarboxyla 99.8 2.2E-19 7.7E-24 185.2 19.8 225 99-363 199-444 (715)
194 2oqx_A Tryptophanase; lyase, p 99.8 3.2E-19 1.1E-23 178.2 19.2 321 70-426 53-420 (467)
195 4eu1_A Mitochondrial aspartate 99.8 3.5E-19 1.2E-23 174.9 18.2 308 56-408 42-383 (409)
196 3hvy_A Cystathionine beta-lyas 99.8 5.7E-19 1.9E-23 173.2 19.5 247 98-396 77-353 (427)
197 3bwn_A AT1G70560, L-tryptophan 99.8 2E-19 6.9E-24 175.6 16.2 311 55-426 22-368 (391)
198 1s0a_A Adenosylmethionine-8-am 99.8 5.4E-18 1.9E-22 167.5 25.4 310 68-424 60-401 (429)
199 3nx3_A Acoat, acetylornithine 99.8 1.2E-17 4.2E-22 163.1 27.4 299 68-424 53-372 (395)
200 3i4j_A Aminotransferase, class 99.8 9.1E-18 3.1E-22 165.9 26.3 319 69-425 47-406 (430)
201 1sff_A 4-aminobutyrate aminotr 99.8 1.2E-17 4E-22 164.7 26.7 305 68-425 58-402 (426)
202 1n8p_A Cystathionine gamma-lya 99.8 1.3E-18 4.4E-23 170.0 19.5 215 98-365 58-279 (393)
203 1z7d_A Ornithine aminotransfer 99.8 1.5E-17 5.1E-22 164.6 26.7 303 68-425 82-407 (433)
204 3ou5_A Serine hydroxymethyltra 99.8 2E-17 6.8E-22 158.4 25.0 322 67-424 65-414 (490)
205 3ht4_A Aluminum resistance pro 99.8 1.6E-18 5.6E-23 170.7 17.7 253 97-396 67-342 (431)
206 2oat_A Ornithine aminotransfer 99.8 1.8E-17 6.3E-22 164.2 24.4 304 68-425 93-417 (439)
207 2eo5_A 419AA long hypothetical 99.8 1.8E-17 6.2E-22 163.2 23.9 294 69-425 61-396 (419)
208 3dxv_A Alpha-amino-epsilon-cap 99.8 2.2E-17 7.5E-22 163.6 23.7 306 68-425 60-403 (439)
209 3n5m_A Adenosylmethionine-8-am 99.8 1.3E-16 4.4E-21 158.7 29.3 321 68-425 66-430 (452)
210 3a8u_X Omega-amino acid--pyruv 99.8 4.5E-17 1.5E-21 161.8 22.7 315 68-424 67-424 (449)
211 3gju_A Putative aminotransfera 99.8 1.6E-16 5.3E-21 158.5 26.2 317 68-424 68-433 (460)
212 1zod_A DGD, 2,2-dialkylglycine 99.8 6.6E-17 2.3E-21 159.8 22.8 310 68-425 60-410 (433)
213 2zy4_A L-aspartate beta-decarb 99.8 2E-17 6.7E-22 168.0 18.7 214 58-293 107-332 (546)
214 4a6r_A Omega transaminase; tra 99.7 1.6E-16 5.5E-21 158.4 23.0 311 68-424 67-426 (459)
215 2hox_A ALLIIN lyase 1; cystein 99.7 8.6E-18 2.9E-22 165.9 13.3 305 58-426 59-406 (427)
216 4ffc_A 4-aminobutyrate aminotr 99.7 1.8E-16 6.2E-21 157.7 22.4 311 68-425 81-427 (453)
217 3hmu_A Aminotransferase, class 99.7 5.7E-16 1.9E-20 154.7 25.5 313 68-423 72-428 (472)
218 3tfu_A Adenosylmethionine-8-am 99.7 2.2E-16 7.5E-21 157.1 22.0 309 68-424 92-430 (457)
219 4h51_A Aspartate aminotransfer 99.7 4.1E-16 1.4E-20 152.6 23.1 332 41-425 31-396 (420)
220 3l44_A Glutamate-1-semialdehyd 99.7 4.2E-16 1.4E-20 154.2 22.9 294 68-408 72-399 (434)
221 3oks_A 4-aminobutyrate transam 99.7 7.4E-16 2.5E-20 153.2 24.7 311 68-425 78-429 (451)
222 3dod_A Adenosylmethionine-8-am 99.7 4E-15 1.4E-19 147.8 29.4 310 68-424 61-420 (448)
223 2cjg_A L-lysine-epsilon aminot 99.7 5.1E-16 1.7E-20 154.2 22.4 313 68-425 71-426 (449)
224 2epj_A Glutamate-1-semialdehyd 99.7 5E-16 1.7E-20 153.6 20.2 299 53-408 54-400 (434)
225 3i5t_A Aminotransferase; pyrid 99.7 1E-15 3.5E-20 153.1 22.4 315 68-424 71-431 (476)
226 3k28_A Glutamate-1-semialdehyd 99.7 1.9E-15 6.4E-20 149.2 23.5 308 53-408 51-396 (429)
227 2cy8_A D-phgat, D-phenylglycin 99.7 1.2E-15 4E-20 151.8 21.4 263 68-381 74-366 (453)
228 3fq8_A Glutamate-1-semialdehyd 99.7 3.4E-15 1.2E-19 147.2 24.3 305 53-408 50-396 (427)
229 4e77_A Glutamate-1-semialdehyd 99.7 1.3E-14 4.3E-19 143.3 24.8 310 53-409 51-399 (429)
230 2e7u_A Glutamate-1-semialdehyd 99.6 5E-15 1.7E-19 145.9 18.7 302 53-408 50-396 (424)
231 1ohv_A 4-aminobutyrate aminotr 99.6 2E-14 6.8E-19 143.6 17.9 321 54-425 62-449 (472)
232 2yky_A Beta-transaminase; tran 99.2 9.9E-15 3.4E-19 144.5 0.0 308 53-408 98-431 (465)
233 4ao9_A Beta-phenylalanine amin 99.2 1.8E-09 6E-14 106.2 24.4 290 67-407 103-416 (454)
234 4atq_A 4-aminobutyrate transam 99.1 7.2E-08 2.4E-12 95.1 29.1 311 67-423 80-431 (456)
235 4e3q_A Pyruvate transaminase; 99.0 2.6E-08 8.9E-13 98.7 22.5 322 53-408 65-436 (473)
236 4a0g_A Adenosylmethionine-8-am 98.8 6.2E-08 2.1E-12 102.4 17.1 319 69-424 399-805 (831)
237 3l6u_A ABC-type sugar transpor 47.0 85 0.0029 27.3 9.0 74 157-242 13-93 (293)
238 3vc3_A Beta-cyanoalnine syntha 43.9 41 0.0014 31.0 6.4 76 120-208 90-165 (344)
239 3kts_A Glycerol uptake operon 40.0 19 0.00064 30.2 3.0 49 191-248 18-66 (192)
240 3rpc_A Possible metal-dependen 39.9 1.8E+02 0.0062 25.1 9.9 76 156-231 162-247 (264)
241 3uug_A Multiple sugar-binding 38.7 1.1E+02 0.0037 27.2 8.5 64 167-242 25-88 (330)
242 3m9w_A D-xylose-binding peripl 38.7 1.1E+02 0.0038 27.0 8.5 64 167-242 24-87 (313)
243 3l49_A ABC sugar (ribose) tran 32.4 1.3E+02 0.0045 26.0 7.8 74 157-242 10-90 (291)
244 3rot_A ABC sugar transporter, 32.2 1.5E+02 0.0051 25.9 8.2 66 167-243 25-91 (297)
245 4gqr_A Pancreatic alpha-amylas 31.3 22 0.00075 34.3 2.5 33 211-249 69-101 (496)
246 3jy6_A Transcriptional regulat 30.1 1.9E+02 0.0064 24.8 8.4 74 157-245 12-93 (276)
247 8abp_A L-arabinose-binding pro 29.4 2E+02 0.0069 24.9 8.6 75 157-244 7-89 (306)
248 3g1w_A Sugar ABC transporter; 29.3 2E+02 0.0069 25.0 8.6 67 167-245 26-94 (305)
249 3tb6_A Arabinose metabolism tr 28.2 2.6E+02 0.0088 24.0 9.0 81 156-245 19-107 (298)
250 1v77_A PH1877P, hypothetical p 27.4 67 0.0023 27.2 4.6 81 156-244 78-166 (212)
251 2ioy_A Periplasmic sugar-bindi 26.9 2.6E+02 0.0088 24.0 8.7 64 167-242 23-86 (283)
252 1y80_A Predicted cobalamin bin 26.2 1.8E+02 0.0062 24.2 7.2 72 167-247 108-180 (210)
253 1tks_A 3,4-dihydroxy-2-butanon 26.1 1.3E+02 0.0045 25.3 6.0 35 202-242 159-193 (204)
254 2yxb_A Coenzyme B12-dependent 25.8 1.5E+02 0.0051 23.7 6.2 83 154-246 18-108 (161)
255 4fgs_A Probable dehydrogenase 25.8 2.9E+02 0.0098 24.3 8.6 84 120-219 31-120 (273)
256 2o1e_A YCDH; alpha-beta protei 25.3 3.4E+02 0.012 24.3 9.2 70 156-241 192-265 (312)
257 3gi1_A LBP, laminin-binding pr 25.3 3.5E+02 0.012 23.8 11.1 71 156-242 181-255 (286)
258 2fn9_A Ribose ABC transporter, 24.8 3E+02 0.01 23.5 8.8 64 167-242 24-87 (290)
259 4aec_A Cysteine synthase, mito 24.8 1.7E+02 0.006 27.7 7.4 52 120-183 178-229 (430)
260 1g94_A Alpha-amylase; beta-alp 24.6 33 0.0011 32.9 2.3 33 211-249 57-89 (448)
261 3mfq_A TROA, high-affinity zin 24.2 64 0.0022 28.7 4.0 70 163-243 169-243 (282)
262 2dri_A D-ribose-binding protei 24.1 3.1E+02 0.011 23.3 8.7 64 167-242 23-86 (271)
263 3tbh_A O-acetyl serine sulfhyd 23.2 1.8E+02 0.0061 26.4 7.0 52 121-184 76-127 (334)
264 3ksm_A ABC-type sugar transpor 23.1 2.2E+02 0.0074 24.2 7.4 65 167-242 22-88 (276)
265 3dwg_A Cysteine synthase B; su 22.9 1.3E+02 0.0044 27.2 6.0 53 120-184 76-128 (325)
266 3o1i_D Periplasmic protein TOR 22.3 1.8E+02 0.0062 25.2 6.8 54 157-210 10-71 (304)
267 2pqm_A Cysteine synthase; OASS 22.2 1.2E+02 0.0043 27.6 5.7 52 120-183 81-132 (343)
268 2ioj_A Hypothetical protein AF 22.1 1.3E+02 0.0043 23.3 5.0 37 195-243 66-103 (139)
269 1f2d_A 1-aminocyclopropane-1-c 22.0 1.6E+02 0.0054 26.8 6.4 30 155-184 95-135 (341)
270 3bh4_A Alpha-amylase; calcium, 21.9 43 0.0015 32.4 2.6 33 211-249 71-103 (483)
271 1ud2_A Amylase, alpha-amylase; 21.9 44 0.0015 32.3 2.6 32 212-249 74-105 (480)
272 3ff4_A Uncharacterized protein 21.8 80 0.0028 24.1 3.6 43 192-248 72-114 (122)
273 1j0a_A 1-aminocyclopropane-1-c 21.8 97 0.0033 28.0 4.8 30 155-184 98-128 (325)
274 3o74_A Fructose transport syst 21.6 2.6E+02 0.009 23.6 7.6 63 167-242 24-86 (272)
275 1lwj_A 4-alpha-glucanotransfer 21.6 47 0.0016 31.7 2.7 32 212-249 63-94 (441)
276 1mxg_A Alpha amylase; hyperthe 21.4 46 0.0016 31.7 2.6 32 212-249 80-111 (435)
277 1hvx_A Alpha-amylase; hydrolas 21.1 46 0.0016 32.5 2.6 32 212-249 75-106 (515)
278 1wpc_A Glucan 1,4-alpha-maltoh 21.1 47 0.0016 32.2 2.6 33 211-249 75-107 (485)
279 2fvy_A D-galactose-binding per 20.9 3.2E+02 0.011 23.6 8.2 67 167-245 24-92 (309)
280 3ezx_A MMCP 1, monomethylamine 20.8 1.8E+02 0.0062 24.5 6.1 73 167-246 112-185 (215)
281 2q3b_A Cysteine synthase A; py 20.8 2E+02 0.0069 25.7 6.8 53 120-184 70-122 (313)
282 3dbi_A Sugar-binding transcrip 20.5 3.7E+02 0.012 23.8 8.6 66 167-245 85-151 (338)
No 1
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=100.00 E-value=4.4e-55 Score=441.77 Aligned_cols=422 Identities=80% Similarity=1.284 Sum_probs=361.4
Q ss_pred CCccccccCCccccccccCchhhhhcCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCccccccccCCChHHHHHHHHHHc
Q 014163 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASI 80 (429)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (429)
||++.+.++.+..+.|.++++|++..+|++.+|+.+.+++++++.+.+.+..++||.+++..+++.+++|.+.+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l~gnp~~~l~s~~t~~~~~~v~~~l~~~~ 80 (502)
T 3hbx_A 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSI 80 (502)
T ss_dssp -----------CCCSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGGSCCGGGBTTCCSCCCCCHHHHHHHHHTT
T ss_pred CCcccccCCCcccccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhccCCCCCceeccccCCCCCHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999998889999998999998888899999999999
Q ss_pred CcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEc
Q 014163 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG 160 (429)
Q Consensus 81 ~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~ 160 (429)
+.+..+|..+|...++|+++++|+++++|++.+..+...+.+|+|||+|+++++++++.++.++++.+|.+..+++|+++
T Consensus 81 ~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~ 160 (502)
T 3hbx_A 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTG 160 (502)
T ss_dssp TCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEE
T ss_pred ccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEc
Confidence 99988888999999999999999999999983222234577899999999999999988877666666766666799999
Q ss_pred CCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCcc
Q 014163 161 ANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240 (429)
Q Consensus 161 ~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~ 240 (429)
.++|+++.++++..|++++.||++++++.+|+++|+++|+++|++|++++++|++|.++|+++|+++|++++++++.++|
T Consensus 161 ~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~ 240 (502)
T 3hbx_A 161 ANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240 (502)
T ss_dssp TTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCC
T ss_pred CCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCe
Confidence 99999999999999999999999875589999999999999999999999999999999999999999998666666899
Q ss_pred EEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCC
Q 014163 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK 320 (429)
Q Consensus 241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr 320 (429)
+|||+||+++..++..+..++++...++|++++++|||+++|.|+|+++++++..+...+.....|+++....+.+.+++
T Consensus 241 l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr 320 (502)
T 3hbx_A 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSK 320 (502)
T ss_dssp EEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSC
T ss_pred EEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCc
Confidence 99999999887666667666777777999999999999999999999999877666555556678887766666677899
Q ss_pred chhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHh
Q 014163 321 GSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLN 400 (429)
Q Consensus 321 ~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~ 400 (429)
++..++++|+++..++.+++++++++..+++++|.+.|+++|+++++.+.+..++++|++++....+..++.+.|.
T Consensus 321 ~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~---- 396 (502)
T 3hbx_A 321 GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLR---- 396 (502)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHH----
Confidence 8888999999999999999999999999999999999999998999876237899999997643466667777777
Q ss_pred ccCceeccc-CCCCCCCceEEEEEecc
Q 014163 401 RFQVVYPQK-LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 401 ~~G~~~~~~-~~~~~~~~~~lRi~~~~ 426 (429)
++|+.++.+ .|....+..++|++++.
T Consensus 397 ~~Gi~v~~~~~p~~~~~~~~lRisv~~ 423 (502)
T 3hbx_A 397 RYGWIVPAYTMPPNAQHITVLRVVIRE 423 (502)
T ss_dssp TTTCBCCEEECCTTCTTCEEEEEECCT
T ss_pred hCCcEEeeccCCcccCCceEEEEEeCC
Confidence 999998776 66666778899999973
No 2
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=2.6e-49 Score=395.43 Aligned_cols=407 Identities=45% Similarity=0.813 Sum_probs=318.3
Q ss_pred cccCchhhhhcCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCccccccccCCChHHHHHHHHHHcCcCCCCCccChhhHH
Q 014163 16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTE 95 (429)
Q Consensus 16 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (429)
+.+++......++..++|+.|.+++++++.+.+.+..++.+..++..|++.+++|.+.+++..+++.+..+|..+|+..+
T Consensus 2 ~~~~~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~ 81 (452)
T 2dgk_A 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAA 81 (452)
T ss_dssp -------------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred CcccchHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChhhChhHHH
Confidence 45666666666666799999999999999999988655555555566666666788999999999988888889999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcC
Q 014163 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFE 175 (429)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G 175 (429)
+|+++++|+++++|++.+......+++|+|||+|++++++++++++..+.+.+|.+..+++|++++ +|+++.++++.+|
T Consensus 82 l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G 160 (452)
T 2dgk_A 82 IDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWD 160 (452)
T ss_dssp HHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcC
Confidence 999999999999999863100013899999999999999998876554444455332346899999 9999999999999
Q ss_pred ceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccccccc
Q 014163 176 VELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255 (429)
Q Consensus 176 ~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (429)
++++.||++++++.+|+++|+++|+++|++|++++|+|+||.++|+++|+++|++++++++.++|+|||+||+++..++.
T Consensus 161 ~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~ 240 (452)
T 2dgk_A 161 VELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240 (452)
T ss_dssp CEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHH
T ss_pred ceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhh
Confidence 99999999864589999999999999999999999999999999999999999995322222999999999998765554
Q ss_pred CCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc
Q 014163 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL 335 (429)
Q Consensus 256 ~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l 335 (429)
.+..++++..+++|++++++|||+++|+|+|+++++++..+.+.+...+.|+++....+++.++|++...+++|++++.+
T Consensus 241 ~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l 320 (452)
T 2dgk_A 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL 320 (452)
T ss_dssp CTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH
T ss_pred CccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH
Confidence 44444555567899999999999999999999999876444344445567776543344567899877889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC---CCceEEEEEecCCC--CCCHHHHHHHHHHHHhccCceeccc-
Q 014163 336 GFEGYKNIMENCMGNARALREGLEKTGRFEILSKD---VGVPLVAFSLKDSS--AHTVFEISEGLRKKLNRFQVVYPQK- 409 (429)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~v~f~~~~~~--~~~~~~~~~~L~~~l~~~G~~~~~~- 409 (429)
+.+++++++++..++++++.+.|+++++++++.+. +..++++|++++.. ..+..++.+.|. ++|+.++.+
T Consensus 321 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~----~~Gi~v~~~~ 396 (452)
T 2dgk_A 321 GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR----LRGWQVPAFT 396 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHH----HTTCBCCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHH----hcCCeeeeee
Confidence 99999999999999999999999999889988652 36789999986421 135567777777 899987655
Q ss_pred CCCCCCCceEEEEEeccc
Q 014163 410 LPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 410 ~~~~~~~~~~lRi~~~~~ 427 (429)
.+....+..++|++++..
T Consensus 397 ~~~~~~~~~~lRis~~~~ 414 (452)
T 2dgk_A 397 LGGEATDIVVMRIMCRRG 414 (452)
T ss_dssp CSTTCTTCEEEEEECCTT
T ss_pred CCcccCCeEEEEEEecCC
Confidence 555556678899999864
No 3
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=100.00 E-value=4.9e-49 Score=394.89 Aligned_cols=393 Identities=19% Similarity=0.204 Sum_probs=307.9
Q ss_pred cccccCchhhhhcCCCCCCCCCCCCHHHHHHHHHHhhcc----CCCCCccccccccCCCh-H-HHHHHHHHHcCcCCCCC
Q 014163 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWME-P-ECDKLVMASINKNYVDM 87 (429)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 87 (429)
+-+...+++++..++. .+|+.|.+.+++++++.+.+.. +.||+| .++++.++. + .+.+++..++|.|...|
T Consensus 29 v~~~~~p~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~ 105 (475)
T 3k40_A 29 VLPEVKPGYLKPLIPD-AAPEKPEKWQDVMQDIERVIMPGVTHWHSPKF--HAYFPTANSYPAIVADMLSGAIACIGFTW 105 (475)
T ss_dssp SSCSSCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTB--CCSSCCCCCHHHHHHHHHHHHHCCCSSSC
T ss_pred CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhccCCCCCCcCc--eeeCCCCCcHHHHHHHHHHHHhCccccCc
Confidence 4556678999999998 9999999999999999987653 578876 566655443 3 48899999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHhhCCCCCC----CCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC------CCcEE
Q 014163 88 DEYPVTTELQNRCVNMIAHLFNTPVAD----DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPNI 157 (429)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~----~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~------~~~~v 157 (429)
..+|+.+++|+++++|+++++|.+.++ .....+++|+|||+||++++.++++++..+.+..|.+. .+++|
T Consensus 106 ~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 185 (475)
T 3k40_A 106 IASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVG 185 (475)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEE
Confidence 999999999999999999999998531 00124899999999999999999887654432223211 12479
Q ss_pred EEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhC------CeEEEEeeCCCccccccChHHHHHHHHHh
Q 014163 158 VTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKK 231 (429)
Q Consensus 158 i~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~la~~~ 231 (429)
++++.+|+|+.++++..|++++.||++++ + ||+++|+++|+++ |++|++++++|++|.++|+++|+++|++|
T Consensus 186 i~s~~~H~s~~~~~~~~g~~~~~v~~d~~-~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~ 263 (475)
T 3k40_A 186 YCSDQAHSSVERAGLLGGVKLRSVQSENH-R-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKH 263 (475)
T ss_dssp EEETTSCHHHHHHHHHHTCEEEEECCBTT-B-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred EECCCchHHHHHHHHHcCCceEEEECCCC-C-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHh
Confidence 99999999999999999999999999875 8 9999999999875 67899999999999999999999999999
Q ss_pred hhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCC
Q 014163 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310 (429)
Q Consensus 232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~ 310 (429)
|+|+|||+||+++.. ..++.+..+ +++.+|++++++|||+++|.|+|+++++++..+.+.+.....|+...
T Consensus 264 ------~~~lhvD~A~~~~~~--~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~ 335 (475)
T 3k40_A 264 ------NLWIHVDAAYAGSAF--ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD 335 (475)
T ss_dssp ------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------
T ss_pred ------CCeEEEeHHhHHHHH--hCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCC
Confidence 999999999988643 333333222 34568999999999999999999999998765544444455665432
Q ss_pred C-------CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCC
Q 014163 311 Q-------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDS 383 (429)
Q Consensus 311 ~-------~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~ 383 (429)
. ..++++++|+ +.++++|++++.++.+|+++++++..++++++.+.|+++++++++.++ ..++++|++++.
T Consensus 336 ~~~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-~~~iv~f~~~~~ 413 (475)
T 3k40_A 336 MQGSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-NMGLVCFRLKGS 413 (475)
T ss_dssp -------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-BTTEEEEEESSC
T ss_pred cCCCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-ceEEEEEEeCCc
Confidence 1 2355677876 578899999999999999999999999999999999999889998765 789999998643
Q ss_pred CCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecccc
Q 014163 384 SAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLRR 428 (429)
Q Consensus 384 ~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~~ 428 (429)
+.....|.++|+++|+.+. .++...+..++|+|++++.
T Consensus 414 -----~~~~~~l~~~L~~~g~~~~--~~~~~~g~~~lR~~~~~~~ 451 (475)
T 3k40_A 414 -----NERNEALLKRINGRGHIHL--VPAKIKDVYFLRMAICSRF 451 (475)
T ss_dssp -----HHHHHHHHHHHHHHTSCBC--EEEEETTEEEEEEECCCTT
T ss_pred -----hHHHHHHHHHHHhCCcEEE--EeeEECCEEEEEEEeCCCC
Confidence 2455667777779997643 2344567889999988653
No 4
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=100.00 E-value=9.3e-49 Score=393.82 Aligned_cols=394 Identities=17% Similarity=0.222 Sum_probs=317.2
Q ss_pred cccccCchhhhhcCCCCCCCCCCCCHHHHHHHHHHhhcc----CCCCCccccccccCCC-hH-HHHHHHHHHcCcCCCCC
Q 014163 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWM-EP-ECDKLVMASINKNYVDM 87 (429)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 87 (429)
+-+...+++++..++. .+|+.|.+.+++++++.+.+.. +.||+| .++++.++ .| .+.+++..++|.+...|
T Consensus 34 v~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 110 (481)
T 4e1o_A 34 VTPDVQPGYLRAQLPE-SAPEDPDSWDSIFGDIERIIMPGVVHWQSPHM--HAYYPALTSWPSLLGDMLADAINCLGFTW 110 (481)
T ss_dssp SSCCCCTTTTGGGSCS-SCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSST
T ss_pred CCCCCCHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe--eEeCCCCCCHHHHHHHHHHHHhCcccCCc
Confidence 4455678999999998 8999999999999999987653 568876 56665543 33 48899999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHhhCCCCCCC-----CCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC------CCcE
Q 014163 88 DEYPVTTELQNRCVNMIAHLFNTPVADD-----KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY------DKPN 156 (429)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~-----~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~------~~~~ 156 (429)
..+|+..++|+++.+|+++++|.+..+. ....+++|+|||+||++++.+++++...+.+..|.+. .+++
T Consensus 111 ~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 190 (481)
T 4e1o_A 111 ASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLV 190 (481)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEE
T ss_pred CCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeE
Confidence 9999999999999999999999985310 0124799999999999999999987665443333221 2358
Q ss_pred EEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhC------CeEEEEeeCCCccccccChHHHHHHHHH
Q 014163 157 IVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTK 230 (429)
Q Consensus 157 vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~la~~ 230 (429)
|++++.+|+++.++++..|++++.||++++ ++||+++|+++|+++ |++|++++++|++|.++|+++|+++|++
T Consensus 191 v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~-~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~ 269 (481)
T 4e1o_A 191 AYASDQAHSSVEKAGLISLVKMKFLPVDDN-FSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAR 269 (481)
T ss_dssp EEEETTSCHHHHHHHHHHTCEEEEECCCTT-SCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred EEEcCcchHHHHHHHHhCCCceEEEEcCCC-CcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH
Confidence 999999999999999999999999999865 899999999999875 7889999999999999999999999999
Q ss_pred hhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCC
Q 014163 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS 309 (429)
Q Consensus 231 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~ 309 (429)
| |+|+|||+||+++.. ..++.+... +++.+|++++++|||+++|.|+|+++++++..+...+.....|+..
T Consensus 270 ~------~~~lhvDaA~g~~~~--~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~ 341 (481)
T 4e1o_A 270 E------GLWLHIDAAYAGTAF--LCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH 341 (481)
T ss_dssp H------TCEEEEECTTGGGGG--GSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCC
T ss_pred c------CCeEEeehhhHHHHH--hChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccC
Confidence 9 999999999998643 333333222 4456899999999999999999999998865544444444556543
Q ss_pred CC-------CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecC
Q 014163 310 DQ-------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382 (429)
Q Consensus 310 ~~-------~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~ 382 (429)
.. ..++++++|+ +.++++|++++.++.+|+++++++..++++++.+.|+++++++++.++ ..++++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~~ 419 (481)
T 4e1o_A 342 ANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR-HLGLVVFRLKG 419 (481)
T ss_dssp TTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-CSSEEEEEESS
T ss_pred cccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-ceeEEEEEeCC
Confidence 21 2345667776 578899999999999999999999999999999999999889998765 78999999864
Q ss_pred CCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecccc
Q 014163 383 SSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLRR 428 (429)
Q Consensus 383 ~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~~ 428 (429)
. +.....|.++|+++|+++. .+....+..++|++++++.
T Consensus 420 ~-----~~~~~~l~~~L~~~g~~~~--~~~~~~g~~~lR~~~~~~~ 458 (481)
T 4e1o_A 420 P-----NSLTENVLKEIAKAGRLFL--IPATIQDKLIIRFTVTSQF 458 (481)
T ss_dssp C-----HHHHHHHHHHHHHHCSSBC--EEEEETTEEEEEEECCCTT
T ss_pred c-----hHHHHHHHHHHHhCCeEEE--EeeEECCEEEEEEEeCCCC
Confidence 2 2455667777779996543 2344567889999987654
No 5
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=100.00 E-value=2e-46 Score=379.16 Aligned_cols=395 Identities=16% Similarity=0.181 Sum_probs=313.5
Q ss_pred cccCchhhhhc---CCCCCCCCCCCCHHHHHHHHHHhhcc---CCCCCccccccccCCCh-H-HHHHHHHHHcCcCCCCC
Q 014163 16 STFASRYVRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWME-P-ECDKLVMASINKNYVDM 87 (429)
Q Consensus 16 ~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 87 (429)
+...|++++.. ++. ++|+.|.+.+++++++.+.+.. +.||.| .++++..+. + .+.+++..+++.+...|
T Consensus 51 ~~~~p~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~f--~~~~~~~~~~~~~~~e~l~~~~~~~~~~~ 127 (511)
T 3vp6_A 51 DFHHPHQLLEGMEGFNL-ELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMFTY 127 (511)
T ss_dssp CCCCHHHHHHCBTTBCC-CCCSSCCCHHHHHHHHHHHHHTSCCTTSTTE--ESSSSCCCCHHHHHHHHHHHHHCCCSSCT
T ss_pred CCCCHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHhhccCCCCCCCc--eEeecCCCcHHHHHHHHHHHHhccCCCCc
Confidence 45678999988 775 8999999999999999887753 567875 566766543 3 37799999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEEcCCCchH
Q 014163 88 DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY-DKPNIVTGANVQVC 166 (429)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~-~~~~vi~~~~~h~s 166 (429)
..+|+..++|+++++|+++++|++.+. ..+++|+|||+|++.++.++++++.+..+++|... .+.+|++++.+|++
T Consensus 128 ~~~p~~~~le~~~~~~l~~~~g~~~~~---~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s 204 (511)
T 3vp6_A 128 EIAPVFVLMEQITLKKMREIVGWSSKD---GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 204 (511)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCSSS---CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTH
T ss_pred ccCchHHHHHHHHHHHHHHHhCCCCCC---CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHH
Confidence 999999999999999999999998421 35899999999999999999886533323334211 23589999999999
Q ss_pred HHHHHHhcCc---eeEEEeccCCccccCHHHHHHHhhhC------CeEEEEeeCCCccccccChHHHHHHHHHhhhccCC
Q 014163 167 WEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW 237 (429)
Q Consensus 167 ~~~~~~~~G~---~v~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~ 237 (429)
+.++++.+|+ +++.||++++ +.||+++|+++|+++ |++|++++++|++|.++|+++|+++|++|
T Consensus 205 ~~~~~~~~g~g~~~~~~v~~d~~-~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~------ 277 (511)
T 3vp6_A 205 IKKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY------ 277 (511)
T ss_dssp HHHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH------
T ss_pred HHHHHHHcCCCCCcEEEeecCCC-CccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc------
Confidence 9999999999 8999999875 899999999999876 88999999999999999999999999999
Q ss_pred CccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCC-----
Q 014163 238 DTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ----- 311 (429)
Q Consensus 238 ~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~----- 311 (429)
|+|+|||+||+++.+ ..++.+..+ ++.++|++++++|||+++|.|+|+++++++..+...+.....|+....
T Consensus 278 ~~~lhvD~a~~~~~~--~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 355 (511)
T 3vp6_A 278 NLWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDV 355 (511)
T ss_dssp TCEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCG
T ss_pred CCEEEEEccchhhHh--hChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccccccc
Confidence 999999999998765 445554444 456789999999999999999999999887655443344556654321
Q ss_pred ----CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeC-CCCceEEEEEecCCCCC
Q 014163 312 ----PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK-DVGVPLVAFSLKDSSAH 386 (429)
Q Consensus 312 ----~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~~ 386 (429)
..++++++|+ +.++++|++++.+|.+|+++++++..++++++.+.|+++|+++++.+ ++..++++|++.+. ..
T Consensus 356 ~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~-~~ 433 (511)
T 3vp6_A 356 SYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ-SL 433 (511)
T ss_dssp GGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCG-GG
T ss_pred ccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCc-cc
Confidence 2345667776 47889999999999999999999999999999999999988999873 23688899998653 11
Q ss_pred -----------CHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecccc
Q 014163 387 -----------TVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLRR 428 (429)
Q Consensus 387 -----------~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~~ 428 (429)
..+..+..+.++|.++|+.+..+ .+...+..++|+++++++
T Consensus 434 ~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~-~~~~~~~~~lRi~~~~~~ 485 (511)
T 3vp6_A 434 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGY-QPQGDKANFFRMVISNPA 485 (511)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEE-EEETTEEEEEEECCCCTT
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcCCEEEEE-EEeCCceEEEEEEecCCC
Confidence 12233455666777999765432 111233468999997654
No 6
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=100.00 E-value=3.3e-45 Score=368.99 Aligned_cols=393 Identities=20% Similarity=0.248 Sum_probs=299.7
Q ss_pred cccccCchhhhhcCCCCCCCCCCCCHHHHHHHHHHhhcc----CCCCCccccccccCCCh-H-HHHHHHHHHcCcCCCCC
Q 014163 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTWME-P-ECDKLVMASINKNYVDM 87 (429)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 87 (429)
+.+...+++++..++. .+|+.|.+++++++++.+.+.. +.||.| .++.+..+. + .+.+++..+++.+...|
T Consensus 29 ~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 105 (486)
T 1js3_A 29 VYPDVQPGYLRPLIPA-TAPQEPDTFEDILQDVEKIIMPGVTHWHSPYF--FAYFPTASSYPAMLADMLCGAIGCIGFSW 105 (486)
T ss_dssp SSCCCCTTCSGGGSCS-SCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTB--CSSSCCCCCHHHHHHHHHHHHHCCCCSSG
T ss_pred CCCCCCHHHHHHhccc-cCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc--eEeCCCCCCHHHHHHHHHHHHhCcCcccc
Confidence 3344578999999997 8999999999999999886643 457876 556665543 3 38899999999888888
Q ss_pred ccChhhHHHHHHHHHHHHHhhCCCCCCC----CCCCceEeCCchHHHHHHHHHHHHHHHHHHHhc-CCC-----CCCcEE
Q 014163 88 DEYPVTTELQNRCVNMIAHLFNTPVADD----KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ-GKP-----YDKPNI 157 (429)
Q Consensus 88 ~~~~~~~~le~~~~~~la~l~g~~~~~~----~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~-g~~-----~~~~~v 157 (429)
..++...++|+++++|+++++|++.++. ....+++|+|||+||++++.++++++.++.+.. |.- ..+..|
T Consensus 106 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v 185 (486)
T 1js3_A 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185 (486)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred ccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEE
Confidence 8999999999999999999999985210 012479999999999999999887543321111 100 001248
Q ss_pred EEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCC------eEEEEeeCCCccccccChHHHHHHHHHh
Q 014163 158 VTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231 (429)
Q Consensus 158 i~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~------~~v~~~~~~~~tG~~~~l~~I~~la~~~ 231 (429)
+++.++|+++.++++.+|++++.||++++ +.+|+++|+++|++++ .+|++++|+|++|.++|+++|+++|++|
T Consensus 186 ~~s~~~h~s~~~~~~~~G~~v~~v~~d~~-~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~ 264 (486)
T 1js3_A 186 YASDQAHSSVERAGLIGGVKLKAIPSDGK-FAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEE 264 (486)
T ss_dssp EEETTCCHHHHHHHHHHTCEEEEECCCTT-SCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHT
T ss_pred EECCCCcHHHHHHHHhCCCceEEeecCCC-CCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHc
Confidence 88999999999999999999999999764 8999999999998765 4899999999999999999999999999
Q ss_pred hhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCC
Q 014163 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310 (429)
Q Consensus 232 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~ 310 (429)
|+|+|||+||+++.. ..++.+..+ +++++|++++++|||+++|+++|+++++++..+.+.+...+.|+...
T Consensus 265 ------~~~lhvD~a~g~~~~--~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 265 ------DIWLHVDAAYAGSAF--ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp ------TCEEEEECTTGGGGG--GSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---------
T ss_pred ------CCEEEEehhhHHHHH--HCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCC
Confidence 999999999998653 333333222 44579999999999999999999999987643333333334454321
Q ss_pred C---------CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEec
Q 014163 311 Q---------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (429)
Q Consensus 311 ~---------~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (429)
. ..++++++|+. ..+++|++++.++.+++++++++..++++++.+.|+++++++++.++ ..++++|++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~ 414 (486)
T 1js3_A 337 HQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLK 414 (486)
T ss_dssp ---CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEES
T ss_pred cccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEec
Confidence 1 12344566653 67899999999999999999999999999999999999889998765 6889999986
Q ss_pred CCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 382 DSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 382 ~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+. +.+...|.++|.++|+.+.. +..+.+..++|++++++
T Consensus 415 ~~-----~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~lRi~~~~~ 453 (486)
T 1js3_A 415 GS-----DGLNEALLERINSARKIHLV--PCRLRGQFVLRFAICSR 453 (486)
T ss_dssp SC-----HHHHHHHHHHHHHHTSCBCE--EEEETTEEEEEEECCCT
T ss_pred Ch-----HHHHHHHHHHHHhcCCEEEE--EEEECCEEEEEEEeCCC
Confidence 42 23455666666689976432 23345678999998654
No 7
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=100.00 E-value=2.7e-43 Score=356.51 Aligned_cols=396 Identities=16% Similarity=0.173 Sum_probs=301.4
Q ss_pred cccccCchhhhhc---CCCCCCCCCCCCHHHHHHHHHHhhcc---CCCCCccccccccCCChHH--HHHHHHHHcCcCCC
Q 014163 14 LSSTFASRYVRAA---IPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWMEPE--CDKLVMASINKNYV 85 (429)
Q Consensus 14 ~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 85 (429)
+-+...+++++.. ++. ++|+.|.+.+++++++.+.+.. .+||.| .++.+..+.|. +.+++..+++.+..
T Consensus 46 ~~~~~~p~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~ 122 (504)
T 2okj_A 46 VLDFHHPHQLLEGMEGFNL-ELSDHPESLEQILVDCRDTLKYGVRTGHPRF--FNQLSTGLDIIGLAGEWLTSTANTNMF 122 (504)
T ss_dssp SCCCCCHHHHHSCBTTBCC-CCCSSCCCHHHHHHHHHHHHHTSCCTTCTTE--ESSSSCCCCHHHHHHHHHHHHHCCBSS
T ss_pred CCCCCCHHHHHHHhhccCC-CCCCCCCCHHHHHHHHHHHhhccCCCCCCCE--EEEccCCCCHHHHHHHHHHHhhccCCC
Confidence 4455578999988 775 8999999999999999886653 357765 46666665554 56888888899888
Q ss_pred CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCC-CCcEEEEcCCCc
Q 014163 86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY-DKPNIVTGANVQ 164 (429)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~-~~~~vi~~~~~h 164 (429)
.|..++...++|+++++|+++++|++.+. ..+++|+|||+|+++++.+++++..+..+.+|... .+.+|+++..+|
T Consensus 123 ~~~~~~~~~~le~~~~~~la~~~g~~~~~---~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h 199 (504)
T 2okj_A 123 TYEIAPVFVLMEQITLKKMREIVGWSSKD---GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 199 (504)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHTCCSSS---CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred chhhChHHHHHHHHHHHHHHHHhCCCCCC---CCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcch
Confidence 88889999999999999999999997311 35899999999999999999864322111123110 123799999999
Q ss_pred hHHHHHHHhcCc---eeEEEeccCCccccCHHHHHHHhhh------CCeEEEEeeCCCccccccChHHHHHHHHHhhhcc
Q 014163 165 VCWEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEET 235 (429)
Q Consensus 165 ~s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~ 235 (429)
+++.++++.+|+ +++.||++++ +++|+++|+++|++ +|++|++++|+|++|.++|+++|+++|++|
T Consensus 200 ~s~~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~---- 274 (504)
T 2okj_A 200 YSIKKAGAALGFGTDNVILIKCNER-GKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY---- 274 (504)
T ss_dssp THHHHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCCcccEEEEecCCC-CCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHc----
Confidence 999999999987 7899999765 89999999999987 589999999999999999999999999999
Q ss_pred CCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCC---
Q 014163 236 GWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ--- 311 (429)
Q Consensus 236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~--- 311 (429)
|+|+|||+||+++.. ..++.+..+ ++.++|++++++|||+++|.|+|++++++++.+...+.....|+.+..
T Consensus 275 --g~~lhvD~a~~~~~~--~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (504)
T 2okj_A 275 --NLWLHVDAAWGGGLL--MSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQY 350 (504)
T ss_dssp --TCEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSS
T ss_pred --CCEEEEehhhhhHHH--hCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccc
Confidence 999999999998754 334333343 245799999999999999999999999876544322233455653321
Q ss_pred ------CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeC-CCCceEEEEEecCCC
Q 014163 312 ------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK-DVGVPLVAFSLKDSS 384 (429)
Q Consensus 312 ------~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~ 384 (429)
..++++++|+. ..+++|++++.++.+++++++++..++++++.+.|+++++++++.+ ++..++++|++.+..
T Consensus 351 ~~~~~~~~~~~~~~rr~-~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~ 429 (504)
T 2okj_A 351 DVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQS 429 (504)
T ss_dssp CGGGCCGGGSSCSSCBC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGG
T ss_pred cCcCCcccCCCCCCCCc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcc
Confidence 12344667764 5778999999999999999999999999999999999988999873 136788999875421
Q ss_pred --CC-C-------HHHHHHHHHHHHhccCceecccCCCCCCCc-eEEEEEeccc
Q 014163 385 --AH-T-------VFEISEGLRKKLNRFQVVYPQKLPMSYPWS-TKLRVISHLR 427 (429)
Q Consensus 385 --~~-~-------~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~-~~lRi~~~~~ 427 (429)
.. + .++.+..+.++|.++|+++... ....+. .++|++++++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~--~~~~~~~~~lRis~~~~ 481 (504)
T 2okj_A 430 LRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGY--QPQGDKANFFRMVISNP 481 (504)
T ss_dssp GSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEE--EEETTEEEEEEECCCCT
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEe--eEECCceEEEEEEeCCC
Confidence 00 0 1123455666666999654322 112343 6899999743
No 8
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.2e-42 Score=351.24 Aligned_cols=389 Identities=17% Similarity=0.251 Sum_probs=294.5
Q ss_pred ccCchhhhhcCCCCCCCCCCCCHHHHHHHHHHhhc----cCCCCCccccccccCCChHHH-HHHHHHHcCcCCCCCccCh
Q 014163 17 TFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELM----LDGNPRLNLASFVTTWMEPEC-DKLVMASINKNYVDMDEYP 91 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 91 (429)
...+++++..++..++|+.+.+.+++++++.+.+. .+.||.| |..+.++..++.+ .+.+...+|.+...|..+|
T Consensus 58 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~ 136 (497)
T 2qma_A 58 GMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDC-IAHLHTPPLMPAVAAEAMIAALNQSMDSWDQAS 136 (497)
T ss_dssp CCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTB-CSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCH
T ss_pred CCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe-eEeCCCCCcHHHHHHHHHHHhhcccccchhhCh
Confidence 34688899999986789999999999999987654 2567776 3333333444554 5555667777777788899
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHH-----HhcCCCC--CCcEEEEcCCCc
Q 014163 92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR-----KEQGKPY--DKPNIVTGANVQ 164 (429)
Q Consensus 92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~-----~~~g~~~--~~~~vi~~~~~h 164 (429)
...++|+++++|+++++|++.. ..+++|+|||+||.+++.++++.+..+. +.+|.+. ++.+|+++..+|
T Consensus 137 ~~~~le~~~~~~la~~~g~~~~----~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h 212 (497)
T 2qma_A 137 SATYVEQKVVNWLCDKYDLSEK----ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSH 212 (497)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTT----CEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCC----CCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCch
Confidence 9999999999999999999642 3499999999999999999876433211 1123211 123899999999
Q ss_pred hHHHHHHHhcCc---eeEEEeccCCccccCHHHHHHHhhhC------CeEEEEeeCCCccccccChHHHHHHHHHhhhcc
Q 014163 165 VCWEKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDEN------TICVAAILGSTLTGEFEDVKLLHDLLTKKNEET 235 (429)
Q Consensus 165 ~s~~~~~~~~G~---~v~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~ 235 (429)
+++.++++.+|+ +++.||++++ +++|+++|+++|+++ +.+|++++++|++|.++|+++|+++|++|
T Consensus 213 ~s~~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~---- 287 (497)
T 2qma_A 213 FTVQKSASWMGLGEKAVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKH---- 287 (497)
T ss_dssp THHHHHHHHTTSCGGGEEEECBCTT-SSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHcCCCcccEEEEecCCC-CcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHc----
Confidence 999999999987 7899999865 899999999999874 34889999999999999999999999999
Q ss_pred CCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCC---
Q 014163 236 GWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ--- 311 (429)
Q Consensus 236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~--- 311 (429)
|+|+|||+||+++..+ .+ ....+ +++++|++++++|||+++|.++|+++++++..+ ..+.....|+....
T Consensus 288 --~~~l~vD~a~~~~~~~--~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~-~~~~~~~~yl~~~~~~~ 361 (497)
T 2qma_A 288 --DMWMHVDGAYGGALIL--SS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDEL 361 (497)
T ss_dssp --TCEEEEEETTGGGGGG--ST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGG-GGGCC------------
T ss_pred --CCEEEEehhhhHHHHh--Cc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHH-HHhcCCchhcCCccccC
Confidence 9999999999986542 22 22222 344789999999999999999999999876543 33333344543211
Q ss_pred ---CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCH
Q 014163 312 ---PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTV 388 (429)
Q Consensus 312 ---~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~ 388 (429)
..+.++++|. +..+++|++++.++.+++++++++..++++++.+.|+++++++++.++ ..++++|++.+. ....
T Consensus 362 ~~~~~~~~~~~r~-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~-~~~~ 438 (497)
T 2qma_A 362 PNLVDKSIATTKR-FDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-SLSTVLFRATHE-TADL 438 (497)
T ss_dssp --------CCSCC-CTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-SSSEEEEEECCS-SSCH
T ss_pred CCccccCCCCCCc-hhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-CceEEEEEEcCC-ccCH
Confidence 1234456776 467889999999999999999999999999999999999889998765 688999998653 2345
Q ss_pred HHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 389 FEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 389 ~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++++..|.++|.++|+.+... +...+..++|+++++
T Consensus 439 ~~l~~~l~~~l~~~G~~~~~~--~~~~g~~~lRis~~~ 474 (497)
T 2qma_A 439 DELNKALRLEALTRGIAVLGE--TIVDGKTALKFTILN 474 (497)
T ss_dssp HHHHHHHHHHHHHHTSCBCEE--EEETTEEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCEEEEe--eEECCEEEEEEEecC
Confidence 566777777788999887542 234566789999853
No 9
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=100.00 E-value=6.2e-42 Score=347.28 Aligned_cols=392 Identities=15% Similarity=0.169 Sum_probs=293.7
Q ss_pred cccccCchhhhhcCCCCCCCCCCCCHHHHHHHHHHhhcc---CCCCCccccccccCCChHH--HHHHHHHHcCcCCCCCc
Q 014163 14 LSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELML---DGNPRLNLASFVTTWMEPE--CDKLVMASINKNYVDMD 88 (429)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 88 (429)
+-+...+++++..++. .+|+.|.+++++++++.+.+.. ..||.| .++.+..+.|. +.+++..+.+.+...|.
T Consensus 65 v~~~~~p~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 141 (515)
T 2jis_A 65 VCEWKEPEELKQLLDL-ELRSQGESQKQILERCRAVIRYSVKTGHPRF--FNQLFSGLDPHALAGRIITESLNTSQYTYE 141 (515)
T ss_dssp SCCCCCHHHHHHHHCC-CCCSSCCCHHHHHHHHHHHHHHSCCTTSTTE--ESSSCCCCCHHHHHHHHHHHHHCCCTTCTT
T ss_pred CCCCCCHHHHHhhccc-CCCCCCCCHHHHHHHHHHHhcCCCCCCCCCe--EEEeeCCCCHHHHHHHHHHHHhccCCCchh
Confidence 3445678999988886 8999999999999998886653 357765 45666555443 55777877788877888
Q ss_pred cChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEcCCCchHH
Q 014163 89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCW 167 (429)
Q Consensus 89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~-~~~~~vi~~~~~h~s~ 167 (429)
.+++..++|+++++|+++++|++. ..+++|+|||+||++++.+++.++.+..+.+|.. ..+.+|++++.+|+++
T Consensus 142 ~s~~~~~le~~~~~~la~l~g~~~-----~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~ 216 (515)
T 2jis_A 142 IAPVFVLMEEEVLRKLRALVGWSS-----GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI 216 (515)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCSS-----CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred hchHHHHHHHHHHHHHHHHhCCCC-----CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH
Confidence 999999999999999999999974 3489999999999999999876432110112210 1123899999999999
Q ss_pred HHHHHhcCc---eeEEEeccCCccccCHHHHHHHhhh------CCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCC
Q 014163 168 EKFARYFEV---ELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238 (429)
Q Consensus 168 ~~~~~~~G~---~v~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~ 238 (429)
.++++.+|+ +++.||++++ +.+|+++|+++|++ +|++|++++++|++|.++|+++|+++|+++ |
T Consensus 217 ~~~~~~~g~g~~~v~~v~~~~~-~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~------g 289 (515)
T 2jis_A 217 QKGAAFLGLGTDSVRVVKADER-GKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRH------G 289 (515)
T ss_dssp HHHHHHTTSCGGGEEEECBCTT-SCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHH------T
T ss_pred HHHHHHcCCCCCcEEEEecCCC-CcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHc------C
Confidence 999999998 8999999865 89999999999987 489999999999999999999999999999 9
Q ss_pred ccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCCCCeEEEEEeCC-CCcccccccccCCCCCC------
Q 014163 239 TPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVYAGVGWVVWRTK-DDLPDELVFHINYLGSD------ 310 (429)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~-~~~~~~~~~~~~~~~~~------ 310 (429)
+|+|||+||+++.. ..+.....+ ++.++|++++++|||+++|.|+|+++++++ ..+...+...+.|+.+.
T Consensus 290 ~~l~vD~a~~~~~~--~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 290 LWLHVDAAWGGSVL--LSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp CEEEEEETTGGGGG--GCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred CeEEEehhhhhHHH--hChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999998765 333333333 344799999999999999999999999876 33322222234555321
Q ss_pred ---CCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCC--C
Q 014163 311 ---QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--A 385 (429)
Q Consensus 311 ---~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~--~ 385 (429)
...++++++|. ...+++|++++.++.+|++++.++..++++++.+.|+++++++++.++ ..+.++|++.+.. +
T Consensus 368 ~~~~~~~~~~~~rr-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-~~~~v~f~~~p~~~~~ 445 (515)
T 2jis_A 368 ALDTGDKVVQCGRR-VDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP-EFVNVCFWFVPPSLRG 445 (515)
T ss_dssp GGCCGGGCSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC-SSSEEEEEECCGGGTT
T ss_pred cCCCCCCCCCCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-CeeEEEEEEeCccccc
Confidence 11234456665 357889999999999999999999999999999999999889998765 5788999875320 1
Q ss_pred C-CHHH-------HHHHHHHHHhccCceecccCCCCCCC-ceEEEEEecc
Q 014163 386 H-TVFE-------ISEGLRKKLNRFQVVYPQKLPMSYPW-STKLRVISHL 426 (429)
Q Consensus 386 ~-~~~~-------~~~~L~~~l~~~G~~~~~~~~~~~~~-~~~lRi~~~~ 426 (429)
. +..+ ++..+.++|.++|+.+..+ ....+ ..++|+++++
T Consensus 446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~--~~~~~~~~~lRis~~~ 493 (515)
T 2jis_A 446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGY--QPHGTRGNFFRVVVAN 493 (515)
T ss_dssp CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEE--EEETTEEEEEEEECCC
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEE--EEECCceEEEEEEeCC
Confidence 0 1112 2334566677999765322 11223 4689999953
No 10
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=319.38 Aligned_cols=365 Identities=22% Similarity=0.375 Sum_probs=284.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhcc-C----CCCCccccccccCCChHHHHHHHHHHc----CcCCCCCccChhhHHHHHHHH
Q 014163 31 KMPDNSMPKEAAYQVINDELML-D----GNPRLNLASFVTTWMEPECDKLVMASI----NKNYVDMDEYPVTTELQNRCV 101 (429)
Q Consensus 31 ~~p~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~le~~~~ 101 (429)
.+|+.+.+.+++++.+.+.... . .++.+ .++.... .+.+.+++.+++ +.+..+|..+++..++|+++.
T Consensus 37 ~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (497)
T 3mc6_A 37 QLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKV--SGAVYHG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVV 113 (497)
T ss_dssp SCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCB--SSSCSCC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCE--eeecCCC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHH
Confidence 7899999999999999887653 1 22332 2332222 244444444444 447777888999999999999
Q ss_pred HHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEE
Q 014163 102 NMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEV 181 (429)
Q Consensus 102 ~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v 181 (429)
+|+++++|++.+. ..+++|+|||+|+.++++++++....+ +| ..+++|+++.++|.++.++++..|++++.|
T Consensus 114 ~~la~~~g~~~~~---~~~~~~~ggt~a~~~a~~a~~~~~~~~---~g--~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v 185 (497)
T 3mc6_A 114 SMVLRMFNAPSDT---GCGTTTSGGTESLLLACLSAKMYALHH---RG--ITEPEIIAPVTAHAGFDKAAYYFGMKLRHV 185 (497)
T ss_dssp HHHHHHTTCCTTT---CCEEEESSHHHHHHHHHHHHHHHHHHH---SC--CSSCEEEEETTSCHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhCCCCCC---CeEEEcCcHHHHHHHHHHHHHHHHHhc---CC--CCCceEEEeCCccHHHHHHHHHcCCeEEEE
Confidence 9999999998211 348999999999999999987743211 22 234689999999999999999999999999
Q ss_pred eccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCC----
Q 014163 182 KLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP---- 257 (429)
Q Consensus 182 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---- 257 (429)
|++++++.+|+++|+++++++|++|++++++|++|.++|+++|+++|++| |+|+|||+||+++..+|...
T Consensus 186 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~livD~a~~~~~~~f~~~~~~~ 259 (497)
T 3mc6_A 186 ELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKY------KLPLHVDSCLGSFIVSFMEKAGYK 259 (497)
T ss_dssp CBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHT------TCCEEEETTTTHHHHGGGTTTTCC
T ss_pred ecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHh------CCEEEEECcchhhhhhhhhhhccc
Confidence 99874489999999999999999999999999999999999999999999 99999999999876553321
Q ss_pred CC-ccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC
Q 014163 258 DL-EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG 336 (429)
Q Consensus 258 ~~-~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~ 336 (429)
.. .+++...++|++++++|||+++|.|+|+++++++............|.++......+.|+++....+++|++++.++
T Consensus 260 ~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~ 339 (497)
T 3mc6_A 260 NLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG 339 (497)
T ss_dssp SCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH
T ss_pred CCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh
Confidence 11 23444567999999999999999999999987643222222233455544434455668888878889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCC
Q 014163 337 FEGYKNIMENCMGNARALREGLEK-TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYP 415 (429)
Q Consensus 337 ~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~ 415 (429)
.++++++.++..++++++.+.|++ +++++++.++ ..++++|+.. +.+..++.+.|. ++||.++.+..
T Consensus 340 ~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-~~~~v~~~~~---~~~~~~l~~~L~----~~Gi~v~~~~~---- 407 (497)
T 3mc6_A 340 ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-RYSVISFSSK---TLNIHELSDRLS----KKGWHFNALQK---- 407 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-CSSEEEEECT---TTTHHHHHHHHH----TTTCBCEECCS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-CeeEEEEeCC---CCCHHHHHHHHH----hCCEEEecCCC----
Confidence 999999999999999999999999 6889998765 6888999853 356778888888 99998875411
Q ss_pred CceEEEEEec
Q 014163 416 WSTKLRVISH 425 (429)
Q Consensus 416 ~~~~lRi~~~ 425 (429)
...+|+++.
T Consensus 408 -~~~~ri~~~ 416 (497)
T 3mc6_A 408 -PVALHMAFT 416 (497)
T ss_dssp -SCCEEEECC
T ss_pred -CCeEEEEEe
Confidence 224788876
No 11
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-35 Score=290.36 Aligned_cols=362 Identities=22% Similarity=0.317 Sum_probs=281.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhccC---CCCCccccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHh
Q 014163 31 KMPDNSMPKEAAYQVINDELMLD---GNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHL 107 (429)
Q Consensus 31 ~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l 107 (429)
.+|+.+.+.+++++.+.+..... .+|.+ .+..+.+++|.+.+++.+.+..+..++..+++..+++++++++++++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 81 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNI--FGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSL 81 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCB--CSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhhccCCCCCCCCe--EEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHH
Confidence 57889999999999998876432 22333 34445556678899999888877666667788899999999999999
Q ss_pred hCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCc
Q 014163 108 FNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGY 187 (429)
Q Consensus 108 ~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~ 187 (429)
+|++. ..+++|+||++|+.+++.+++..+..++........+++|+++.++|+++..+++..|++++.+|++++
T Consensus 82 ~~~~~-----~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~- 155 (397)
T 3f9t_A 82 LNNKD-----AYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED- 155 (397)
T ss_dssp TTCTT-----CEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTT-
T ss_pred hCCCC-----CCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCC-
Confidence 99975 247999999999999999988764333221111123579999999999999999999999999999875
Q ss_pred cccCHHHHHHHhhh-CCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCC-------CC
Q 014163 188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DL 259 (429)
Q Consensus 188 ~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-------~~ 259 (429)
+.+|+++|++++++ ++++|++++++|++|.+.|+++|.++|++| |+++|+|++|+++..++... ..
T Consensus 156 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~~~~~~~~~~~~~~ 229 (397)
T 3f9t_A 156 YTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKEN------NIYIHVDAAFGGLVIPFLDDKYKKKGVNY 229 (397)
T ss_dssp SSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTGGGTGGGCCGGGCCTTCCC
T ss_pred CcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHh------CCeEEEEccccchhhhhcccccccccccc
Confidence 89999999999999 899999999999999999999999999999 99999999998765543321 11
Q ss_pred ccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHH
Q 014163 260 EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG 339 (429)
Q Consensus 260 ~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g 339 (429)
..++.. ++|++++++||++++|.++|+++++++... +.+.....|..... ...+.+++++...+++++++..++..+
T Consensus 230 ~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~ 306 (397)
T 3f9t_A 230 KFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETR-QATILGTRVGFGGACTYAVLRYLGREG 306 (397)
T ss_dssp CCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGG-GGTCEECTTSSSSE-ECSSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cCCeEEEccccccCCCCCceEEEEeCHHHH-HhhccCCccccCCC-ccccccccccchHHHHHHHHHHHhHHH
Confidence 233334 799999999999999999999998765432 33322234443321 122346777778889999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceE
Q 014163 340 YKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTK 419 (429)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~ 419 (429)
++++.++..++++++.+.|+++ +++++.++ ..++++|...+ ..++.+.|. ++|+.+.... ...+
T Consensus 307 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~----~~gi~v~~~~-----~~~~ 370 (397)
T 3f9t_A 307 QRKIVNECMENTLYLYKKLKEN-NFKPVIEP-ILNIVAIEDED-----YKEVCKKLR----DRGIYVSVCN-----CVKA 370 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCBSSCC-SSSEEEEECTT-----HHHHHHHHH----HTTCBCEECS-----SSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCEEEcCC-CccEEEEEeCC-----HHHHHHHHH----hCCeEEeccC-----CCCE
Confidence 9999999999999999999998 58776665 67888887642 456666666 8899877531 1357
Q ss_pred EEEEec
Q 014163 420 LRVISH 425 (429)
Q Consensus 420 lRi~~~ 425 (429)
+|++++
T Consensus 371 ~Ri~~~ 376 (397)
T 3f9t_A 371 LRIVVM 376 (397)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 999987
No 12
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=100.00 E-value=8e-36 Score=302.49 Aligned_cols=367 Identities=21% Similarity=0.298 Sum_probs=282.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhcc----CCCCCccccccccCC---ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHH
Q 014163 31 KMPDNSMPKEAAYQVINDELML----DGNPRLNLASFVTTW---MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNM 103 (429)
Q Consensus 31 ~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 103 (429)
.+|+.+.+.+++++.+.+.+.. +.++.+ .++.... ..+.+.+++....+.+...+..+++..++|+++++|
T Consensus 70 ~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~ 147 (514)
T 3mad_A 70 RLPRAGLPRAEILAEIAAMGAAESPAWRDGYA--SGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAM 147 (514)
T ss_dssp SCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCB--SSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCCce--EEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHH
Confidence 6789999999999998877532 334544 2322221 123466777777788888888899999999999999
Q ss_pred HHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEec
Q 014163 104 IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183 (429)
Q Consensus 104 la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~ 183 (429)
+++++|++.+. +...+.+|+||++|+.+++++++.....+ .| ..+++|+++.++|.++.++++..|++++.||+
T Consensus 148 la~~~g~~~~~-~~v~~~~t~ggt~a~~~al~a~~~~g~~~---~g--~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~ 221 (514)
T 3mad_A 148 TAHMLGGDAAG-GTVCGTVTSGGTESLLLAMKTYRDWARAT---KG--ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL 221 (514)
T ss_dssp HHHHTTGGGGT-SCCEEEEESSHHHHHHHHHHHHHHHHHHH---HC--CSSCEEEEETTSCTHHHHHHHHHTCEEEEECB
T ss_pred HHHHcCCCCcc-CCcceEEcCcHHHHHHHHHHHHHHHhhhh---cC--CCCCeEEEeCccchHHHHHHHHcCCeeEEeee
Confidence 99999997311 11235999999999999999998753221 12 23479999999999999999999999999999
Q ss_pred cCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccccccc---C-CCC
Q 014163 184 EEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL---Y-PDL 259 (429)
Q Consensus 184 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~---~-~~~ 259 (429)
+++ +.+|+++|+++|++++++|++++++|++|.++|+++|+++|++| |+|+|+|+||+++..++. . +..
T Consensus 222 ~~~-~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------~i~livDea~~~~~~~~~~~~g~~~~ 294 (514)
T 3mad_A 222 DAD-YRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEH------GIGCHVDACLGGFILPWAERLGYPVP 294 (514)
T ss_dssp CTT-SCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTTTTHHHHHHTTCCCC
T ss_pred CCC-CCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHh------CCeEEEecccccccchhHHhcCCCCC
Confidence 874 89999999999999999999999999999999999999999999 999999999998754311 1 111
Q ss_pred ccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHH
Q 014163 260 EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG 339 (429)
Q Consensus 260 ~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g 339 (429)
.+++...++|++++++||++++|.|+|+++++++............|.++....+.+.|+++....+++|+++..++.++
T Consensus 295 ~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~ 374 (514)
T 3mad_A 295 PFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374 (514)
T ss_dssp CCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHH
Confidence 23444567999999999999999999999988754332222223344443333344568888878899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceE
Q 014163 340 YKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTK 419 (429)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~ 419 (429)
++++.++..++++++.+.|+++++++++.++ .+++.|... +.+..++.+.|. ++|+.+..+. ....
T Consensus 375 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~---~~~~~~l~~~L~----~~Gi~v~g~~-----~~~~ 440 (514)
T 3mad_A 375 YLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVASD---ELNIYQVMEEMA----GRGWRLNGLH-----RPPA 440 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEECS---SSCHHHHHHHHH----TTTCBCEEET-----TTTE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeCC---CCCHHHHHHHHH----hcCCEeccCC-----CCCe
Confidence 9999999999999999999999889988654 457777642 456777888887 8998874321 1235
Q ss_pred EEEEecc
Q 014163 420 LRVISHL 426 (429)
Q Consensus 420 lRi~~~~ 426 (429)
+|+++++
T Consensus 441 ~Ri~~~~ 447 (514)
T 3mad_A 441 FHVALTL 447 (514)
T ss_dssp EEEECCG
T ss_pred EEEEEec
Confidence 8999874
No 13
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=2.2e-32 Score=273.02 Aligned_cols=331 Identities=15% Similarity=0.147 Sum_probs=235.1
Q ss_pred hhcCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCccccccccCCChHHHHHHHHH-----HcCc----------CCCCCc
Q 014163 24 RAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMA-----SINK----------NYVDMD 88 (429)
Q Consensus 24 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------~~~~~~ 88 (429)
+..++..++|+.|.+.+++.+...+....+...+++..+ +++.++.+.+++.. ..+. |+ .|.
T Consensus 50 ~~~~~~~~lp~~g~~~~~i~~~~~~~~~~~~~~yld~aa--~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 126 (456)
T 2z67_A 50 EDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVR--IGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KAS 126 (456)
T ss_dssp HHHHHHCSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEE--CSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBH
T ss_pred HHhhccCCCCCCCCCHHHHHHHHHHHHhccccccccccc--cccccccccccccCccccccCCCccHHHHHHhhCc-ccc
Confidence 355555689999999999888777655443322232222 22223333333322 1111 11 223
Q ss_pred cChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCch-HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHH
Q 014163 89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW 167 (429)
Q Consensus 89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t-~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~ 167 (429)
.++...++++++++++++++|++. . +++|+|+| .++..++.+++... ++++|+++.++|+++
T Consensus 127 ~~~~~~~~~~~~~~~la~~~g~~~-----~-~~~t~g~te~a~~~al~~~~~~~-----------~~~~vi~~~~~h~s~ 189 (456)
T 2z67_A 127 GASIMYALTNKILESFFKQLGLNV-----H-AIATPISTGMSISLCLSAARKKY-----------GSNVVIYPYASHKSP 189 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-----E-EEEESSCHHHHHHHHHHHHHHHH-----------CCCEEEEECCCCHHH
T ss_pred cCcHHHHHHHHHHHHHHHHcCCCC-----C-EEEeCcHHHHHHHHHHHHHHHhc-----------CCCEEEEECCCcHHH
Confidence 345688899999999999999975 3 89999999 56666777654311 125788899999999
Q ss_pred HHHHHhcCceeEEEecc--CCccccCHHHHHHHh-h----hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCcc
Q 014163 168 EKFARYFEVELKEVKLE--EGYYVMNPVKAVELV-D----ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240 (429)
Q Consensus 168 ~~~~~~~G~~v~~v~~~--~~~~~~d~~~l~~~i-~----~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~ 240 (429)
.++++..|++++.+++. ++++.+|+++|+++| + .++.+|+++.++|++|.++|+++|+++|+++ |+|
T Consensus 190 ~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~------g~~ 263 (456)
T 2z67_A 190 IKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENY------DIP 263 (456)
T ss_dssp HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHH------TCC
T ss_pred HHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHc------CCc
Confidence 99999999999999873 234899999999999 5 3677888899999999999999999999999 999
Q ss_pred EEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCC
Q 014163 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSK 320 (429)
Q Consensus 241 l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr 320 (429)
+|||+||+.+..++. +.....+.. ++|++++++|||+++|.|+|++++++++.+ ..+ .+.|. |++
T Consensus 264 v~vD~A~~~~~~g~~-~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~-~~l--~~~~~----------g~~ 328 (456)
T 2z67_A 264 HIINGAYAIQNNYYL-EKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFI-KEI--SLSYP----------GRA 328 (456)
T ss_dssp EEEECTTTTTCHHHH-HHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHH-HHH--HTTSC----------SCB
T ss_pred EEEECcchHHHHHhh-HHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHH-hhc--CcCCC----------CCC
Confidence 999999986543221 000001111 699999999999999999999999654332 111 23333 223
Q ss_pred chhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHH
Q 014163 321 GSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK 397 (429)
Q Consensus 321 ~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~ 397 (429)
+....+++|+++..++.++++++.++..++++++.+.|++++ ++.++. + . ++++|++..+ +. ..++.+.|.
T Consensus 329 ~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~-~-~-~~v~~~~~~~-~~-~~~l~~~L~- 402 (456)
T 2z67_A 329 SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD-V-E-SPIASCISVN-SD-PVEIAAKLY- 402 (456)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC-C-C-CSSEEEEECS-SC-HHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecC-C-C-CeEEEEEecc-cH-HHHHHHHHH-
Confidence 334578899999999999999999999999999999999984 566553 3 3 7788887321 11 456777776
Q ss_pred HHhccCc
Q 014163 398 KLNRFQV 404 (429)
Q Consensus 398 ~l~~~G~ 404 (429)
++|+
T Consensus 403 ---~~gi 406 (456)
T 2z67_A 403 ---NLRV 406 (456)
T ss_dssp ---HTTE
T ss_pred ---HcCC
Confidence 7775
No 14
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.97 E-value=4e-28 Score=243.30 Aligned_cols=358 Identities=11% Similarity=0.057 Sum_probs=246.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccCCC---CCccccccccCCChHHHHHHHHHHcCc-CCCCCc-cChhhHHHHHHHHHHH
Q 014163 30 FKMPDNSMPKEAAYQVINDELMLDGN---PRLNLASFVTTWMEPECDKLVMASINK-NYVDMD-EYPVTTELQNRCVNMI 104 (429)
Q Consensus 30 ~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~le~~~~~~l 104 (429)
..+| +.+..++++++.+....+.. ..+.++ +++....|.+.+.+...+.. +...+. .+++..++++++.+++
T Consensus 40 ~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l 116 (474)
T 1wyu_B 40 PRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYL 116 (474)
T ss_dssp CCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHH
T ss_pred CCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHH
Confidence 3677 68999999998887654321 223355 45545556655555544322 222222 4788899999999999
Q ss_pred HHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc
Q 014163 105 AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE 184 (429)
Q Consensus 105 a~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~ 184 (429)
++++|++. ..++|+||++|+..++++++..... +|...++++|+++.++|.++..+++..|++++.||++
T Consensus 117 a~~~g~~~------~~~~~~ggt~a~~~al~~~~~~~~~----~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~ 186 (474)
T 1wyu_B 117 KALTGMDA------ITLEPAAGAHGELTGILIIRAYHED----RGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG 186 (474)
T ss_dssp HHHHTCSE------EECCCSSHHHHHHHHHHHHHHHHHH----TTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC
T ss_pred HHHHCCCc------eeecChHHHHHHHHHHHHHHHHHHh----cCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC
Confidence 99999974 2668899999999988887643211 2210123589999999999999999999999999998
Q ss_pred CCccccCHHHHHHHhhhCCeEEEEeeCCCccccc-cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc
Q 014163 185 EGYYVMNPVKAVELVDENTICVAAILGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF 263 (429)
Q Consensus 185 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~ 263 (429)
++ +.+|+++|++++++++++|+++++ |++|.+ +++++|+++|+++ |+++|+|++|+.+..... ..
T Consensus 187 ~~-~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~------g~~li~Dea~~~~~~g~~------~~ 252 (474)
T 1wyu_B 187 PE-GEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRLCKEA------GVQLYYDGANLNAIMGWA------RP 252 (474)
T ss_dssp TT-SSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHHHHHH------TCEEEEEGGGGGGTTTTC------CH
T ss_pred CC-CCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHHHHHc------CCEEEEeCchhhhhccCC------Cc
Confidence 65 899999999999999999999987 579998 7999999999999 999999999976442111 11
Q ss_pred CCCCeeEEEEcCcccCCCCC-----CeEEEEEeCCCCcccccccc-c-----CCCC--CCC---CCceeccCCchhHHHH
Q 014163 264 RLPLVKSINVSGHKYGLVYA-----GVGWVVWRTKDDLPDELVFH-I-----NYLG--SDQ---PTFTLNFSKGSSQIIA 327 (429)
Q Consensus 264 ~~~~~d~~~~s~hK~~~~p~-----g~g~l~~~~~~~~~~~~~~~-~-----~~~~--~~~---~~~~~~~tr~~~~~~~ 327 (429)
+..++|++++++||+++.|. |+|+++++++ .. +.+... . .|.. ... .... .++.+.....+
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~-~~l~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~a 329 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LA-PYLPVPLVERGEEGFYLDFDRPKSIGRVR-SFYGNFLALVR 329 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GG-GGCCSCEEEECSSCEEEECCCTTCCCCSS-STTSCHHHHHH
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HH-HhCCCCeeeccCCeeEecccCcccCcccc-cCcCcHHHHHH
Confidence 11258999999999988875 6899998753 22 222100 0 0000 000 0000 02223344555
Q ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceec
Q 014163 328 QYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYP 407 (429)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~ 407 (429)
.+..+..++.+++++..++..++++++.+.|+++ ++++..++...+.+.+.+. .+.+..++.++|. ++|+.+.
T Consensus 330 a~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~----~~Gi~~~ 402 (474)
T 1wyu_B 330 AWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPP--EGFRALDLAKGLL----ELGFHPP 402 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCS--TTCCHHHHHHHHH----HTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcC--CCCCHHHHHHHHH----HCCcccc
Confidence 6666766778889999999999999999999998 5776433212322334442 2456778888887 8898864
Q ss_pred cc-CCCCCCCceEEEEEecc
Q 014163 408 QK-LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 408 ~~-~~~~~~~~~~lRi~~~~ 426 (429)
.. ++. ....++|++++.
T Consensus 403 ~~~~~~--~~~~~lRis~~~ 420 (474)
T 1wyu_B 403 TVYFPL--IVKEALMVEPTE 420 (474)
T ss_dssp EESCST--TSTTCEEECCCT
T ss_pred cccccc--ccCCEEEEEeec
Confidence 32 221 123569999874
No 15
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.97 E-value=2.6e-28 Score=237.11 Aligned_cols=299 Identities=14% Similarity=0.049 Sum_probs=219.6
Q ss_pred CChHHHHHHHHHHcCcCCCC----CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~ 142 (429)
+++|.+.+++.+.+.....+ +.......++.+++++++++++|++. ..+++|+|+++|+.+++.++.....
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~i~~~~g~~~a~~~~~~~~~~~~~ 85 (382)
T 4hvk_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMRNA 85 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTT-----EEEEEESSHHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEECCchHHHHHHHHHhhhhhc
Confidence 45677888877776543221 22234567788899999999999975 2489999999999999998763211
Q ss_pred HHHHhcCCCCCCcEEEEcCCCchHHHHHHHh---cCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcccccc
Q 014163 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE 219 (429)
Q Consensus 143 ~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 219 (429)
.+ +++|+++.++|+++..++.. .|++++.+|++++ +.+|+++|++++++++++|++++++|+||.+.
T Consensus 86 ----~~-----gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 155 (382)
T 4hvk_A 86 ----RK-----GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGTIQ 155 (382)
T ss_dssp ----GG-----CCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCBBC
T ss_pred ----CC-----CCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCC-CCcCHHHHHHHhccCceEEEEECCCCCceeeC
Confidence 02 36899999999998776555 5999999999865 78999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccc
Q 014163 220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299 (429)
Q Consensus 220 ~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~ 299 (429)
|+++|.++|++| |+ +|+|++|+.+..+ .++...++|+++.++||+ ++|.|+|+++++++..+.
T Consensus 156 ~~~~i~~l~~~~------~~-li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~-- 218 (382)
T 4hvk_A 156 PVEEISEVLAGK------AA-LHIDATASVGQIE-------VDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQ-- 218 (382)
T ss_dssp CHHHHHHHHSSS------SE-EEEECTTTBTTBC-------CCHHHHTCSEEEEESGGG-TSCTTCEEEEEETTCCCC--
T ss_pred CHHHHHHHHHHc------CE-EEEEhHHhcCCCC-------CCchhcCCCEEEEeHHHh-cCCCceEEEEEcCccCcC--
Confidence 999999999999 99 9999999754321 111112589999999997 567789999988653221
Q ss_pred cccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC-C-ceEEE
Q 014163 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-G-VPLVA 377 (429)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~-~~~v~ 377 (429)
..+.++........++.+.....++.+++..+ .+++++..++..++++++.+.|++++++++..++. . .++++
T Consensus 219 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 293 (382)
T 4hvk_A 219 ----PVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVN 293 (382)
T ss_dssp ----CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEE
T ss_pred ----cccccCCCcCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEE
Confidence 11111111111112455545555555666533 46788999999999999999999998898876532 2 35788
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhccCceeccc
Q 014163 378 FSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 378 f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
|.+. +.+..++.+.|. ++|+.++..
T Consensus 294 ~~~~---~~~~~~~~~~l~----~~gi~v~~g 318 (382)
T 4hvk_A 294 VRFS---YIEGESIVLSLD----MAGIQASTG 318 (382)
T ss_dssp EEET---TCCHHHHHHHHH----HTTCBCBCC
T ss_pred EEEC---CCCHHHHHHHHH----HCCEEEeeC
Confidence 8874 346677777777 899988754
No 16
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.97 E-value=7.2e-30 Score=248.82 Aligned_cols=305 Identities=13% Similarity=0.056 Sum_probs=216.2
Q ss_pred hcCCCCCCCCCCCCHHHHHHHHHHhhccC--CCC----------Cc-------cccccccCCChHHHHHHHHHHcCcCCC
Q 014163 25 AAIPRFKMPDNSMPKEAAYQVINDELMLD--GNP----------RL-------NLASFVTTWMEPECDKLVMASINKNYV 85 (429)
Q Consensus 25 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~----------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (429)
..+....+|+.|.+.++++..+.+....+ ..+ +. .+++|+++. ....|++.. |.
T Consensus 16 ~~~~~~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~--~~~~d~l~~----~~- 88 (450)
T 3bc8_A 16 LLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI--GRSGDISAV----QP- 88 (450)
T ss_dssp HHHHHCCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB--CC-----------CC-
T ss_pred HHHHhccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch--hHHHHHHHh----Cc-
Confidence 33344489999999999999988755431 111 11 122333322 112344433 44
Q ss_pred CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCch-HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCc
Q 014163 86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS-EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ 164 (429)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t-~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h 164 (429)
.+..+|+...+|+.+..|+.+++|++.. ..+.+++|+| .++.+++.+++.... ..+.|++++.+|
T Consensus 89 ~~~~~~~~~~~e~~~~~~~~~~lGlp~~----~~~~lV~GaT~~~~a~~L~aar~~~~----------~~~~viv~r~aH 154 (450)
T 3bc8_A 89 KAAGSSLLNKITNSLVLNVIKLAGVHSV----ASCFVVPMATGMSLTLCFLTLRHKRP----------KAKYIIWPRIDQ 154 (450)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHHHTCTTC----CEEEEESSCHHHHHHHHHHHHHHHCT----------TCCEEEEECCCC
T ss_pred cccCCcHHHHHHHHHHHHHHHhCCCCCC----ceEEEECCHHHHHHHHHHHHcchhhc----------CCCEEEEECCcH
Confidence 5667888999999999999999999863 3468999998 666656666654210 126899999999
Q ss_pred hHHHHHHHhcCceeEEEecc--CCccccCHHHHHHHhhhC---CeEEEEeeCCC-ccccccChHHHHHHHHHhhhccCCC
Q 014163 165 VCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDEN---TICVAAILGST-LTGEFEDVKLLHDLLTKKNEETGWD 238 (429)
Q Consensus 165 ~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~l~~~i~~~---~~~v~~~~~~~-~tG~~~~l~~I~~la~~~~~~~~~~ 238 (429)
.|+.+++.++|+++++|+.. ++.+.||+++|+++|++. .++++++++++ .+|.++|+++|+++|++| |
T Consensus 155 kSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~------g 228 (450)
T 3bc8_A 155 KSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY------D 228 (450)
T ss_dssp HHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHH------T
T ss_pred HHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHC------C
Confidence 99999999999999998752 335899999999999763 34555555544 457899999999999999 9
Q ss_pred ccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceecc
Q 014163 239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNF 318 (429)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (429)
+|+|||+|||+... +..+.++.-+..+++|+++.|+|||+++|.+++++++++++.+... ...|.+
T Consensus 229 i~l~VD~A~G~~~~-~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~---~~~~~g---------- 294 (450)
T 3bc8_A 229 IPHVVNNAYGLQSS-KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI---SKMYPG---------- 294 (450)
T ss_dssp CCEEEECTTTTTCH-HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH---HHHSCS----------
T ss_pred CeEEEECCCchhhh-hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHH---HHHhhc----------
Confidence 99999999997543 1111000011115799999999999999999999998765443211 223331
Q ss_pred CCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEeeCC
Q 014163 319 SKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG---RFEILSKD 370 (429)
Q Consensus 319 tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~ 370 (429)
+......+.+|+++..+|.+++++.+++..++++++++.|++++ +++++..+
T Consensus 295 ~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~ 349 (450)
T 3bc8_A 295 RASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP 349 (450)
T ss_dssp CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCc
Confidence 11123568899999888999999999999999999999999988 78887654
No 17
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=3.1e-28 Score=239.35 Aligned_cols=323 Identities=11% Similarity=0.039 Sum_probs=233.6
Q ss_pred CCCccccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHH
Q 014163 55 NPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (429)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al 134 (429)
+|...+.+-.|..+++.+.+++...+ .. ..++...++.+++++++++++|.+.. ...++|.||++|+..++
T Consensus 11 ~~~~~~~~pgp~~~~~~v~~a~~~~~---~~--~~~~~~~~~~~~~~~~la~~~~~~~~----~~v~~~~sgt~al~~~~ 81 (411)
T 3nnk_A 11 PPSRLLMGPGPINADPRVLRAMSSQL---IG--QYDPAMTHYMNEVMALYRGVFRTENR----WTMLVDGTSRAGIEAIL 81 (411)
T ss_dssp CCCCEEESSSCCCCCHHHHHHHTSCC---CC--TTCHHHHHHHHHHHHHHHHHHTCCCS----EEEEEESCHHHHHHHHH
T ss_pred CccceeecCCCCCCCHHHHHHhhccc---cc--cccHHHHHHHHHHHHHHHHHhCCCCC----cEEEECCCcHHHHHHHH
Confidence 34332333334445666766655332 11 12456667788999999999999752 22678888999999998
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeC
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILG 211 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 211 (429)
.++.. .+++|+++.++|++ +..+++..|++++.+|++++ +.+|+++|++++++ ++++|+++++
T Consensus 82 ~~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~ 147 (411)
T 3nnk_A 82 VSAIR-------------PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWG-EVFTPDQVEDAVKRIRPRLLLTVQG 147 (411)
T ss_dssp HHHCC-------------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHhcC-------------CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHhhCCCeEEEEeCC
Confidence 88743 23689999999987 88889999999999999765 78999999999987 8999999999
Q ss_pred CCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEe
Q 014163 212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291 (429)
Q Consensus 212 ~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~ 291 (429)
+|++|.+.|+++|+++|++| |+++|+|++++.+..+ .++...++|++++++||++++|.|+|+++++
T Consensus 148 ~nptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~ 214 (411)
T 3nnk_A 148 DTSTTMLQPLAELGEICRRY------DALFYTDATASLGGNP-------LETDVWGLDAVSAGMQKCLGGPSGTSPITLS 214 (411)
T ss_dssp ETTTTEECCCTTHHHHHHHH------TCEEEEECTTTBTTBC-------CCTTTTTCSEEECCSTTTTCCCSSEEEEEEC
T ss_pred CCCcceeccHHHHHHHHHHc------CCEEEEECCcccCCcc-------cchhccCCcEEEecCccccCCCCceEEEEEC
Confidence 99999999999999999999 9999999999764322 1222236899999999998899999999876
Q ss_pred CCCCccccccc----ccCCCCCCC-----------------------CCceeccCCchhHHHHHHHHHHHcCHHHHHHHH
Q 014163 292 TKDDLPDELVF----HINYLGSDQ-----------------------PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIM 344 (429)
Q Consensus 292 ~~~~~~~~~~~----~~~~~~~~~-----------------------~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~ 344 (429)
++ .. +.+.. .+.|.++.. ......++.+.....++.++++.+...++++..
T Consensus 215 ~~-~~-~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~ 292 (411)
T 3nnk_A 215 AR-ME-EAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGI 292 (411)
T ss_dssp HH-HH-HHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HH-HH-HHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 42 21 11111 111111110 000112566666677777788777777889999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEeeCCC--CceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEE
Q 014163 345 ENCMGNARALREGLEKTGRFEILSKDV--GVPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLR 421 (429)
Q Consensus 345 ~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lR 421 (429)
++..++++++.+.|++++ ++++.++. ..++++|.++. +.+..++.+.|. ++ |+.++..+. .....++|
T Consensus 293 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~----~~~gi~v~~g~~--~~~~~~iR 363 (411)
T 3nnk_A 293 ARHKLHGDALVKGIQAMG-LETFGDLKHKMNNVLGVVIPQ--GINGDQARKLML----EDFGIEIGTSFG--PLHGKVWR 363 (411)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCBCSCGGGBCSSEEEEECCT--TCCHHHHHHHHH----HHHSEEEEECCG--GGTTTEEE
T ss_pred HHHHHHHHHHHHHHHHcC-CEeCCCcccccccEEEEECCC--CCCHHHHHHHHH----HhcCeEEeCccC--CCCCCEEE
Confidence 999999999999999984 77765431 25677787742 457778888877 66 998875321 12334799
Q ss_pred EEe
Q 014163 422 VIS 424 (429)
Q Consensus 422 i~~ 424 (429)
+++
T Consensus 364 i~~ 366 (411)
T 3nnk_A 364 IGT 366 (411)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
No 18
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=1e-27 Score=233.33 Aligned_cols=299 Identities=14% Similarity=0.044 Sum_probs=216.9
Q ss_pred CChHHHHHHHHHHcCcCCCC----CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~ 142 (429)
++++.+.+++.+.+.....+ +..++...+..+++++++++++|+++ ..+++|+|+++|+.+++.++...+.
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~l~~~~~ 85 (382)
T 4eb5_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG-----GTVVFTSGATEANNLAIIGYAMRNA 85 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT-----EEEEEESSHHHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEcCchHHHHHHHHHHHHhhcc
Confidence 55677888887776542221 22233456777889999999999864 2389999999999999998873210
Q ss_pred HHHHhcCCCCCCcEEEEcCCCchHHHHHHHh---cCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcccccc
Q 014163 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE 219 (429)
Q Consensus 143 ~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 219 (429)
.+ +++|++++++|+++..++.. .|++++.+|++++ +.+|+++|++++++++++|++++++|+||.+.
T Consensus 86 ----~~-----gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 155 (382)
T 4eb5_A 86 ----RK-----GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKY-GEVDVSFIDQKLRDDTILVSVQHANNEIGTIQ 155 (382)
T ss_dssp ----GG-----CCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTT-SCBCHHHHHHHCCTTEEEEECCSBCTTTCBBC
T ss_pred ----CC-----CCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCC-CccCHHHHHHHhcCCCeEEEEeccCCCccccC
Confidence 02 26899999999988776654 6999999999865 78999999999998899999999999999999
Q ss_pred ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccc
Q 014163 220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299 (429)
Q Consensus 220 ~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~ 299 (429)
|+++|.++|+++ |++ |+|++|+.+..+ .++...++|+++.|+||+ ++|.|+|+++++++..+..
T Consensus 156 ~l~~i~~l~~~~------~~~-i~D~a~~~g~~~-------~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~~l~~- 219 (382)
T 4eb5_A 156 PVEEISEVLAGK------AAL-HIDATASVGQIE-------VDVEKIGADMLTISSNDI-YGPKGVGALWIRKEAKLQP- 219 (382)
T ss_dssp CHHHHHHHHTTS------SEE-EEECTTTBTTBC-------CCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTCCCCC-
T ss_pred CHHHHHHHHHHC------CCE-EEEcchhcCCcc-------cCccccCCCEEEeehHHh-cCCCceEEEEEccccccCc-
Confidence 999999999999 999 999999843221 111112579999999998 5677899999876521211
Q ss_pred cccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--CceEEE
Q 014163 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVPLVA 377 (429)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~v~ 377 (429)
.+.+.........++.+.....++.++++.+. ++++++.++..++++++.+.|+++++++++.++. ..+++.
T Consensus 220 -----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 293 (382)
T 4eb5_A 220 -----VILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVN 293 (382)
T ss_dssp -----SSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEE
T ss_pred -----eecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEE
Confidence 11111000001124554445555666666543 3688899999999999999999997788775431 255788
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhccCceeccc
Q 014163 378 FSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 378 f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
|+++ +.+..++.+.|. ++|+.+...
T Consensus 294 ~~~~---~~~~~~~~~~l~----~~gi~v~~g 318 (382)
T 4eb5_A 294 VRFS---YIEGESIVLSLD----MAGIQASTG 318 (382)
T ss_dssp EEET---TSCHHHHHHHHH----HHTCBCBCC
T ss_pred EEeC---CcCHHHHHHHHH----HCCEEEecc
Confidence 8874 346677777777 889988753
No 19
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=5.4e-28 Score=238.03 Aligned_cols=293 Identities=14% Similarity=0.092 Sum_probs=219.1
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCCCCCCCCCc-eEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH--
Q 014163 90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVG-VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-- 166 (429)
Q Consensus 90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~-~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s-- 166 (429)
.+...++.+++++++++++|.+.+ .. .++.|+|+|+..++.++.. .+++|+++.++|++
T Consensus 39 ~~~~~~~~~~l~~~la~~~g~~~~-----~~~~~~~s~t~al~~~~~~l~~-------------~gd~Vl~~~~~~~~~~ 100 (416)
T 3isl_A 39 DPAFTGIMNETMEMLRELFQTKNR-----WAYPIDGTSRAGIEAVLASVIE-------------PEDDVLIPIYGRFGYL 100 (416)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCS-----EEEEEESCHHHHHHHHHHHHCC-------------TTCEEEEEESSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCC-----cEEEecCcHHHHHHHHHHHhcC-------------CCCEEEEecCCcccHH
Confidence 345577788999999999998752 24 4788899999998887743 23689999999998
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhh-hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeec
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA 245 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~ 245 (429)
+..+++..|++++.+|++++ +.+|+++|+++++ +++++|++++++|+||.+.|+++|.++|++| |+++|+|+
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~ 173 (416)
T 3isl_A 101 LTEIAERYGANVHMLECEWG-TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTE------DALFIVDA 173 (416)
T ss_dssp HHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHT------TCEEEEEC
T ss_pred HHHHHHhcCCeeEEEecCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHc------CCEEEEEC
Confidence 88889999999999999875 7899999999998 5899999999999999999999999999999 99999999
Q ss_pred ccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccccc----CC--------C-CCC--
Q 014163 246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI----NY--------L-GSD-- 310 (429)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~----~~--------~-~~~-- 310 (429)
+|+.+..+ .++...++|++++++||++++|.|+|+++++++ .. +.+.... .| . ++.
T Consensus 174 a~~~~~~~-------~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~-~~~~~~~~~~~Gw~~~~~~~~~~gg~~~ 244 (416)
T 3isl_A 174 VATIGGCE-------VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNER-VA-DVIAARKKVERGIATQADRAALSGNRPI 244 (416)
T ss_dssp TTTTTTSC-------CCTTTTTCSEEECCSSSTTCCCSSEEEEEECHH-HH-HHHHTC------------------CCCC
T ss_pred CccccCCC-------cchhhcCCCEEEecCccccCCCCCeEEEEECHH-HH-HHhhccccccccccccccchhccCCCCC
Confidence 99754321 122223689999999999999999999987542 11 1111000 00 0 000
Q ss_pred --------------CCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--Cce
Q 014163 311 --------------QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVP 374 (429)
Q Consensus 311 --------------~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~ 374 (429)
.......++.+.....++.++++.+...++++..++..++++++.+.|++. ++++..++. ..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 323 (416)
T 3isl_A 245 TSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPV 323 (416)
T ss_dssp SCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTT
T ss_pred CccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCc
Confidence 000111256666667777788877777778999999999999999999997 587765432 246
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEec
Q 014163 375 LVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 375 ~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+++|.++. +.+..++.+.|. ++ |+.++.... .....++|++++
T Consensus 324 ~~~~~~~~--~~~~~~l~~~L~----~~~gi~v~~g~~--~~~~~~iRi~~~ 367 (416)
T 3isl_A 324 VTCVEIPG--GIDGESVRDMLL----AQFGIEIASSFG--PLAGKIWRIGTM 367 (416)
T ss_dssp EEEEECCT--TCCHHHHHHHHH----HHHCEECBCCCS--TTTTTEEEEECC
T ss_pred EEEEeCCC--CCCHHHHHHHHH----HhCCEEEecCCC--CCCCCEEEEecc
Confidence 77888742 456778888887 66 999875421 233457999983
No 20
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=7.7e-28 Score=234.77 Aligned_cols=312 Identities=14% Similarity=0.051 Sum_probs=226.3
Q ss_pred CChHHHHHHHHHHcCcCC----CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHH
Q 014163 67 WMEPECDKLVMASINKNY----VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKW 141 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~ 141 (429)
+.++.+.+++.+.+.... ..+..++.......++++.+++++|.+.+ .+.+|+|+++|+..++.++ ..
T Consensus 27 ~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~-----~v~~~~g~t~a~~~~~~~~~~~-- 99 (390)
T 1elu_A 27 ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN-----TITITDNVTTGCDIVLWGLDWH-- 99 (390)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG-----GEEEESSHHHHHHHHHHHSCCC--
T ss_pred CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHH-----HEEEeCChHHHHHHHHhCCCCC--
Confidence 445667777776664321 11112333335566788889999998642 3899999999999998887 22
Q ss_pred HHHHHhcCCCCCCcEEEEcCCCchHHHH----HHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEeeCCCccc
Q 014163 142 QQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTG 216 (429)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG 216 (429)
.+++|+++.++|.++.. .++..|++++.+|++. +++.+|+++|++++++++++|++++++|+||
T Consensus 100 -----------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 100 -----------QGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTG 168 (390)
T ss_dssp -----------TTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTC
T ss_pred -----------CCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCc
Confidence 23689999999998654 4677899999999862 3478999999999998999999999999999
Q ss_pred cccChHHHHHHHH----HhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeC
Q 014163 217 EFEDVKLLHDLLT----KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292 (429)
Q Consensus 217 ~~~~l~~I~~la~----~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~ 292 (429)
.+.|+++|.++|+ ++ |+++|+|++|+.+..+ .++...+.|+++.+.|||+++|.|+|++++++
T Consensus 169 ~~~~~~~i~~l~~~~~~~~------~~~li~Dea~~~g~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~ 235 (390)
T 1elu_A 169 QVLPLAEIMAVCRRHQGNY------PVRVLVDGAQSAGSLP-------LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHG 235 (390)
T ss_dssp CBCCHHHHHHHHHHCCSSS------CCEEEEECTTTBTTBC-------CCTTTSCCSEEEEESSSTTCCCTTCEEEEECT
T ss_pred eecCHHHHHHHHhhhhhhc------CcEEEEEcccccCCcC-------CChhhcCCCEEEccccccccCCCceEEEEECH
Confidence 9999999999999 99 9999999999854321 12222358999999999999999999999864
Q ss_pred CCCcccccccccCCCCCCC----------------CCceeccCCchhHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHH
Q 014163 293 KDDLPDELVFHINYLGSDQ----------------PTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENCMGNARALR 355 (429)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~tr~~~~~~~~~~al~~l~~~g-~~~~~~~~~~~~~~l~ 355 (429)
+ .. +.+... ..+... ..+ ..++.+.....++.++++.+...+ +++..++..++++++.
T Consensus 236 ~-~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~ 310 (390)
T 1elu_A 236 D-CL-GEINPT--YVGWRSITYGAKGEPTGWAEGGKRF-EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLW 310 (390)
T ss_dssp T-TG-GGCCCC--SCCTTTEEECTTSCEEEECSGGGGG-CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred H-hH-hhcCCc--cccCCcccccccCcccccccchHhh-CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3 32 222111 000000 011 124555455566667777765555 8889999999999999
Q ss_pred HHHHhCCCeEEeeC-CCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 356 EGLEKTGRFEILSK-DVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 356 ~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+.|+++++++++.+ +...++++|+++. +.+..++.+.|. ++|+.+.... +..++|++++
T Consensus 311 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~----~~gi~v~~~~-----~~~~iRis~~ 370 (390)
T 1elu_A 311 RGLNQLPHVHCLATSAPQAGLVSFTVDS--PLGHRAIVQKLE----EQRIYLRTIA-----DPDCIRACCH 370 (390)
T ss_dssp HHHHHSTTEEESCSSCCSSSEEEEEECS--SSCHHHHHHHHH----HTTEECEEET-----TTTEEEEECC
T ss_pred HHHHhcCCcEEecCccccccEEEEEcCC--CCCHHHHHHHHH----HCCEEEEecC-----CCCeEEEecc
Confidence 99999977988764 2357788888742 456777777777 8999987532 3456999984
No 21
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=5.8e-28 Score=232.20 Aligned_cols=311 Identities=12% Similarity=0.030 Sum_probs=224.3
Q ss_pred CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
+++|.+.+++.+.+.. ..++...+...++++++++++|.+.+. ..+++|+|+++|+.+++.++..
T Consensus 10 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~~---~~v~~t~g~t~a~~~~~~~~~~------- 74 (353)
T 2yrr_A 10 PIPERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFDPGEGA---LVAALAGSGSLGMEAGLANLDR------- 74 (353)
T ss_dssp CCCHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHCCCTTC---EEEEESSCHHHHHHHHHHTCSC-------
T ss_pred CCCHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCCC---ceEEEcCCcHHHHHHHHHHhcC-------
Confidence 4556777776665543 134556677789999999999986211 2488999999999988876631
Q ss_pred hcCCCCCCcEEEEcCCCchHH--HHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccChHH
Q 014163 147 EQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL 223 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~ 223 (429)
++|+++++.|+++ ..+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 75 --------d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 145 (353)
T 2yrr_A 75 --------GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPG-EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEA 145 (353)
T ss_dssp --------CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred --------CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHH
Confidence 4688988899874 5667888999999999875 78999999999998 8999999999999999999999
Q ss_pred HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc
Q 014163 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH 303 (429)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~ 303 (429)
|.++|++| |+++|+|++|+.+..+ .++...++|++++++||++++|.|+|+++++++ .. +.+...
T Consensus 146 i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~l~~~ 210 (353)
T 2yrr_A 146 IGALAKEA------GALFFLDAVTTLGMLP-------FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLE-AR-KAFTGK 210 (353)
T ss_dssp HHHHHHHH------TCEEEEECTTTTTTSC-------CCHHHHTCSEEECCTTSTTCCCSSCEEEEECHH-HH-HHCCCC
T ss_pred HHHHHHHc------CCeEEEEcCccccccc-------ccccccCceEEEecCcccccCCCceEEEEECHH-HH-HHhccC
Confidence 99999999 9999999999643211 112112479999999999988899999988653 21 211100
Q ss_pred cCCCCC------CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC-CceEE
Q 014163 304 INYLGS------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVPLV 376 (429)
Q Consensus 304 ~~~~~~------~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~v 376 (429)
..+... ........++.+.....++.++++.+...+++++.++..++++++.+.|+++ +++++.++. ...++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 289 (353)
T 2yrr_A 211 RGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVL 289 (353)
T ss_dssp SCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEE
T ss_pred CCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEE
Confidence 101000 0000111245555555666677777766778899999999999999999998 588875432 34566
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 377 AFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 377 ~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+|+++. +.+..++.+.|. ++|+.+..... ......+|++++
T Consensus 290 ~~~~~~--~~~~~~~~~~l~----~~gi~v~~g~~--~~~~~~iRi~~~ 330 (353)
T 2yrr_A 290 VVRPPE--GVDADRLVRALY----AEGVAVAGGIG--PTRGQVLRLGLM 330 (353)
T ss_dssp EEECCT--TCCHHHHHHHHH----HTTEECEECCG--GGTTTCEEEECS
T ss_pred EEECCC--CCCHHHHHHHHH----HCCEEEeCCcc--ccCCCeEEEecC
Confidence 787642 456777777777 88999875421 122346999984
No 22
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.6e-27 Score=232.23 Aligned_cols=314 Identities=12% Similarity=0.034 Sum_probs=226.8
Q ss_pred cCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~ 144 (429)
+...++.+.+++...+.. .| ++...++++++++++++++|.+. . ..+.+|+||++|+..++.++.+
T Consensus 28 ~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~-~---~~v~~~~g~t~a~~~~~~~l~~----- 93 (386)
T 2dr1_A 28 PVACFPEVLEIMKVQMFS---HR--SKEYRKVHMDTVERLREFLEVEK-G---EVLLVPSSGTGIMEASIRNGVS----- 93 (386)
T ss_dssp SCCCCHHHHHHTTSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCSS-S---EEEEESSCHHHHHHHHHHHHSC-----
T ss_pred CcCCcHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCC-C---cEEEEeCChHHHHHHHHHHhhc-----
Confidence 334456666666554432 22 34457888899999999999971 1 2378999999999999988743
Q ss_pred HHhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEeccCCccccCHHHHHHHhh--hCCeEEEEeeCCCccccccC
Q 014163 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFED 220 (429)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~ 220 (429)
.+++|++++++|++ +..+++..|++++.+|++++ +.+|+++|+++++ +++++|++++++|+||.+.|
T Consensus 94 --------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 164 (386)
T 2dr1_A 94 --------KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG-KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP 164 (386)
T ss_dssp --------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC
T ss_pred --------CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC-CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC
Confidence 13689999999998 88899999999999999875 7899999999994 57899999999999999999
Q ss_pred hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccc
Q 014163 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (429)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~ 300 (429)
+++|.++|++| |+++|+|++|+.+..+ .++...++|+++.++||++++|.|+|+++++++ .. +.+
T Consensus 165 l~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~-~~~ 229 (386)
T 2dr1_A 165 LPELAKVAKEH------DKLVFVDAVSAMGGAD-------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FL-EIA 229 (386)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HH-HHH
T ss_pred HHHHHHHHHHc------CCeEEEEccccccCcc-------ccccccCCcEEEEeccccccCCCceEEEEECHH-HH-HHH
Confidence 99999999999 9999999999865431 122223589999999999988888999988642 21 211
Q ss_pred ccc--cCCCCC------CCC-CceeccCCchhHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC
Q 014163 301 VFH--INYLGS------DQP-TFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRFEILSKD 370 (429)
Q Consensus 301 ~~~--~~~~~~------~~~-~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 370 (429)
... ..|... ... .....++.+.....++..+++.+... ++++..++..++++++.+.|+++ ++++..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 308 (386)
T 2dr1_A 230 EKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEP 308 (386)
T ss_dssp TTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCT
T ss_pred hcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCc
Confidence 100 000000 000 00112344444556666677766555 68899999999999999999998 57776542
Q ss_pred C--CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 371 V--GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 371 ~--~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
. ..++++|+++. +.+..++.+.|. ++|+.+..... ......+|++++
T Consensus 309 ~~~~~~~~~~~~~~--~~~~~~~~~~l~----~~gi~v~~~~~--~~~~~~iRi~~~ 357 (386)
T 2dr1_A 309 GHESPTITAVLTPP--GIKGDEVYEAMR----KRGFELAKGYG--SVKEKTFRIGHM 357 (386)
T ss_dssp TCBCSSEEEEECCT--TCCHHHHHHHHH----HTTEECEECCG--GGTTTEEEEECC
T ss_pred cccCCceEEEEcCC--CCCHHHHHHHHH----HCCeEEecCcc--ccCCCEEEEECC
Confidence 1 35677887742 356777777777 88998876421 123457999987
No 23
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.96 E-value=2e-27 Score=231.95 Aligned_cols=332 Identities=12% Similarity=0.004 Sum_probs=233.6
Q ss_pred CCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
++..++|..+.+.+ ++|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ....+|+|+++|+.+
T Consensus 26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~i~~~~g~~~a~~~ 100 (391)
T 3dzz_A 26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKE---DWCVFASGVVPAISA 100 (391)
T ss_dssp CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCG---GGEEEESCHHHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCH---HHEEECCCHHHHHHH
Confidence 34455566666655 45778899888887654444333 6789999999999999954322 348999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc--CCccccCHHHHHHHhh-hCCeEEEEe
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAI 209 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~l~~~i~-~~~~~v~~~ 209 (429)
++.++.. .+++|+++.++|.++...++..|++++.+|++ ++++.+|+++|+++++ +++++|+++
T Consensus 101 ~~~~l~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 101 MVRQFTS-------------PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp HHHHHSC-------------TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHhCC-------------CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 9988743 23689999999999999999999999999985 4446799999999998 689999999
Q ss_pred eCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc---CCCCee--EEEEcCcccCC-
Q 014163 210 LGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF---RLPLVK--SINVSGHKYGL- 280 (429)
Q Consensus 210 ~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~~~~~d--~~~~s~hK~~~- 280 (429)
+++||||.+ +++++|+++|++| |+++|+|++|+++.. . ......+ .....| +++.+.||+++
T Consensus 168 ~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~-g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~ 238 (391)
T 3dzz_A 168 NPHNPIGYAWSEEEVKRIAELCAKH------QVLLISDEIHGDLVL--T-DEDITPAFTVDWDAKNWVVSLISPSKTFNL 238 (391)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--S-SCCCCCGGGSCTTTGGGEEEEECSHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHC------CCEEEEecccccccC--C-CCCceehhhcCccccCcEEEEEeChhhccc
Confidence 999999999 8899999999999 999999999986542 1 1111111 111144 88899999874
Q ss_pred CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 014163 281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (429)
Q Consensus 281 ~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~ 360 (429)
++.++|+++.++++.. +.+......... ++.+.....++.+++.. +.+.+++..++..++++++.+.|++
T Consensus 239 ~G~r~G~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 239 AALHAACAIIPNPDLR-ARAEESFFLAGI--------GEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp TTTCCEEEECCSHHHH-HHHHHHHHHHTC--------SSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhheEEEECCHHHH-HHHHHHHHhhcc--------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788999887644322 222111110000 11222344444455544 4566788889999999999999998
Q ss_pred -CCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 361 -TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 361 -~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
++++++..+. ...++.+.++.. +.+..++.+.|.+ ++|+.+++.......+..++|+++++.
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~---~~gi~v~~g~~~~~~~~~~iRis~~~~ 371 (391)
T 3dzz_A 309 EVPEVKVLDSN-ASYLAWVDISAL-GMNAEDFCKYLRE---KTGLIISAGNGYRGNGHEFVRINLACP 371 (391)
T ss_dssp HCTTSEECCCC-BSSEEEEECGGG-CSCHHHHHHHHHH---HHCEECEESGGGCTTGGGEEEEECCSC
T ss_pred hCCCcEEeccC-ceEEEEEehhhc-CCCHHHHHHHHHH---hCCEEEeCchhhCCCCCCEEEEEecCC
Confidence 7888877543 333444565432 3567777777731 789998764211223467899998753
No 24
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=4.1e-27 Score=231.95 Aligned_cols=332 Identities=17% Similarity=0.112 Sum_probs=231.1
Q ss_pred CccccccccCCChHHHHHHHHHHcCcCCCC----CccCh-hhHHHHHHHHHHHHHhhCC-CCCCCCCCCceEeCCchHHH
Q 014163 57 RLNLASFVTTWMEPECDKLVMASINKNYVD----MDEYP-VTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~g~t~a~ 130 (429)
.++|..+.+++.++.+.+++.+.+.....+ ...++ .......++++.+++++|. +. ..+++|+|+|+|+
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~ 103 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP-----REIVYTRNATEAI 103 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEcCChHHHH
Confidence 345666666655677888887776542211 11121 2245556788889999998 33 2489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH----HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEE
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICV 206 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v 206 (429)
.+++.+++.... . .+++|+++.++|++ +..+++..|++++.+|++++ +.+|+++|++++++++++|
T Consensus 104 ~~~~~~~~~~~~----~-----~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~v 173 (420)
T 1t3i_A 104 NLVAYSWGMNNL----K-----AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ-ESFDLEHFKTLLSEKTKLV 173 (420)
T ss_dssp HHHHHHTHHHHC----C-----TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT-SSBCHHHHHHHCCTTEEEE
T ss_pred HHHHHHhhhccc----C-----CCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCC-CCcCHHHHHHhhCCCceEE
Confidence 999998742100 0 13689999999987 67788889999999999864 7899999999999999999
Q ss_pred EEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeE
Q 014163 207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG 286 (429)
Q Consensus 207 ~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g 286 (429)
++++++|++|.+.|+++|.++|+++ |+++|+|++|+.+..+ .++...+.|+++.|.|| +++|.|+|
T Consensus 174 ~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK-~~~~~g~G 239 (420)
T 1t3i_A 174 TVVHISNTLGCVNPAEEIAQLAHQA------GAKVLVDACQSAPHYP-------LDVQLIDCDWLVASGHK-MCAPTGIG 239 (420)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEEGGG-TTSCTTCE
T ss_pred EEeCCcccccCcCCHHHHHHHHHHc------CCEEEEEhhhccCCcc-------CchhhcCCCEEEEehhh-hcCCCceE
Confidence 9999999999999999999999999 9999999999864321 11111248999999999 55778899
Q ss_pred EEEEeCCCCccccccccc-CCCC-----C-----CCCCcee-ccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Q 014163 287 WVVWRTKDDLPDELVFHI-NYLG-----S-----DQPTFTL-NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAL 354 (429)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~-~~~~-----~-----~~~~~~~-~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l 354 (429)
+++.+++ .. +.+.... .+.. . ......+ .++.+....+++..+++.+...+++++.++..++++++
T Consensus 240 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 317 (420)
T 1t3i_A 240 FLYGKEE-IL-EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYL 317 (420)
T ss_dssp EEEECHH-HH-HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEEEchH-HH-hhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9887542 21 2111110 0000 0 0000001 14555445555555677766667888999999999999
Q ss_pred HHHHHhCCCeEEeeCC----CCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCC-----CCCC-ceEEEEEe
Q 014163 355 REGLEKTGRFEILSKD----VGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPM-----SYPW-STKLRVIS 424 (429)
Q Consensus 355 ~~~L~~~~~~~~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~-----~~~~-~~~lRi~~ 424 (429)
.+.|+++++++++.+. ...++++|.++ +.+..++.+.|. ++|+.+...... ...+ ..++|+++
T Consensus 318 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~----~~gi~v~~~~~~~~~~~~~~g~~~~iRis~ 390 (420)
T 1t3i_A 318 WQGLGQIPQLRLYGPNPKHGDRAALASFNVA---GLHASDVATMVD----QDGIAIRSGHHCTQPLHRLFDASGSARASL 390 (420)
T ss_dssp HHHHHTCTTEEEESCCGGGSCBCSEEEEEET---TBCHHHHHHHHH----TTTEECBCSCTTCHHHHHHTTCCCCEEEEC
T ss_pred HHHHHhCCCeEEeCCCccccccCCEEEEEEC---CCCHHHHHHHHH----HCCeEEeeccccchHHHHhcCCCCeEEEec
Confidence 9999999779887653 13678888874 245667776666 999998754111 0012 45699998
Q ss_pred cc
Q 014163 425 HL 426 (429)
Q Consensus 425 ~~ 426 (429)
+.
T Consensus 391 ~~ 392 (420)
T 1t3i_A 391 YF 392 (420)
T ss_dssp CT
T ss_pred CC
Confidence 73
No 25
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=5.9e-28 Score=235.02 Aligned_cols=311 Identities=17% Similarity=0.088 Sum_probs=226.8
Q ss_pred CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHH
Q 014163 66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (429)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~ 145 (429)
.+++|.+.+++...+... .++...++.+++++++++++|++.+. ..+.+|+|+++|+. ++.++..
T Consensus 11 ~~~~~~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~---~~v~~~~g~t~al~-~~~~~~~------ 75 (384)
T 3zrp_A 11 TTIKEDVLVAGLENNVGF-----TSKEFVEALAYSLKGLRYVMGASKNY---QPLIIPGGGTSAME-SVTSLLK------ 75 (384)
T ss_dssp SCCCHHHHHHTTCCSCCT-----TSHHHHHHHHHHHHHHHHHHTCCTTS---EEEEEESCHHHHHH-HGGGGCC------
T ss_pred CCCCHHHHHHhhcccccc-----ccHHHHHHHHHHHHHHHHHhCCCCCC---cEEEEcCCcHHHHH-HHHhhcC------
Confidence 345566666665443321 24555777889999999999997521 23889999999999 8776533
Q ss_pred HhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccChH
Q 014163 146 KEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK 222 (429)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~ 222 (429)
.+++|+++++.|++ +..+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|++|.+.|++
T Consensus 76 -------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~ 147 (384)
T 3zrp_A 76 -------PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG-DYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVK 147 (384)
T ss_dssp -------TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT-CCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHH
T ss_pred -------CCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC-CCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHH
Confidence 23689999999976 67777889999999999875 78999999999998 799999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccc-c
Q 014163 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL-V 301 (429)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~-~ 301 (429)
+|.++|++| |+++|+|++|+.+..+ .++...++|++++++||+++++.|+|+++++++ .. +.+ .
T Consensus 148 ~i~~l~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~ 212 (384)
T 3zrp_A 148 DVINKIRKY------VELIVVDGVSSVGAEE-------VKAEEWNVDVYLTASQKALGSAAGLGLLLLSPK-AL-SILDS 212 (384)
T ss_dssp HHHHHHGGG------EEEEEEECTTTTTTSC-------CCTTTTTCSEEEEETTSTTCCCSSEEEEEECHH-HH-HHHHH
T ss_pred HHHHHHHhc------CCEEEEECcccccCcc-------ccccccCCCEEEecCcccccCCCceEEEEECHH-HH-HHhcC
Confidence 999999999 9999999999854321 122223589999999999988999999988643 21 111 0
Q ss_pred c--ccCCCCCCC------C-----CceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEee
Q 014163 302 F--HINYLGSDQ------P-----TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILS 368 (429)
Q Consensus 302 ~--~~~~~~~~~------~-----~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 368 (429)
. ...+..... . .....|+.+.....++.+++..+...+++++.++..++++++.+.|+++ +++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 291 (384)
T 3zrp_A 213 QNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVA 291 (384)
T ss_dssp CCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSC
T ss_pred CCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEcc
Confidence 0 000000000 0 0000135665666777788887777778999999999999999999998 587765
Q ss_pred CC-C--CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 369 KD-V--GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 369 ~~-~--~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
++ . ..++++|.+++ .+..++.+.|. ++|+.++....... .++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~----~~gi~v~~g~~~~~---~~iRi~~~ 341 (384)
T 3zrp_A 292 RRPESYSNTVTGVILKV---ADPQKVLAGTV----NEGVEFAPGVHPAF---KYFRIGHM 341 (384)
T ss_dssp SSGGGBCSSEEEEECSS---SCHHHHHHHHH----TTTCCCEECCCTTC---CEEEEECC
T ss_pred CcccccCccEEEEECCC---CCHHHHHHHHH----HCCEEEecCCCCCc---CEEEEecc
Confidence 43 1 24677787743 56778888887 88998875421111 67999986
No 26
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=3.5e-27 Score=230.66 Aligned_cols=312 Identities=12% Similarity=0.019 Sum_probs=228.5
Q ss_pred cCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~ 144 (429)
|..+++.+.+++.+.+.. .| ++...++.+++++++++++|.+.+ ..+.+|+|+++|+..++.++..
T Consensus 42 ~~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~g~~~~----~~v~~t~g~t~al~~~~~~~~~----- 107 (393)
T 1vjo_A 42 PSNAHPSVLQAMNVSPVG---HL--DPAFLALMDEIQSLLRYVWQTENP----LTIAVSGTGTAAMEATIANAVE----- 107 (393)
T ss_dssp CCCCCHHHHHHHSSCCCC---TT--SHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCC-----
T ss_pred CCCCCHHHHHHHhccccc---cc--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCchHHHHHHHHHhccC-----
Confidence 344567777777655542 22 334667888999999999999642 1389999999999999988743
Q ss_pred HHhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccCh
Q 014163 145 RKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (429)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l 221 (429)
.+++|+++.++|++ +..+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|+||.+.|+
T Consensus 108 --------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l 178 (393)
T 1vjo_A 108 --------PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWG-EVFSLEELRTALETHRPAILALVHAETSTGARQPL 178 (393)
T ss_dssp --------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred --------CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCC-CCCCHHHHHHHHhhCCceEEEEeccCCCcceeccH
Confidence 13689999999998 99999999999999999875 78999999999998 89999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccc
Q 014163 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (429)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~ 301 (429)
++|.++|+++ |+++|+|++|+.+.. ..++...++|+++.++||++++|.|+|+++++++ .. +.+.
T Consensus 179 ~~i~~l~~~~------~~~li~Dea~~~g~~-------~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~-~~~~ 243 (393)
T 1vjo_A 179 EGVGELCREF------GTLLLVDTVTSLGGV-------PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR-AI-EKLQ 243 (393)
T ss_dssp TTHHHHHHHH------TCEEEEECTTTTTTS-------CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-HH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEECCccccCc-------CCcccccCccEEEEcCcccccCCCceEEEEECHH-HH-HHHh
Confidence 9999999999 999999999984321 1222223689999999999888889999998643 21 2111
Q ss_pred cc----cCCCCC--------CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeC
Q 014163 302 FH----INYLGS--------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK 369 (429)
Q Consensus 302 ~~----~~~~~~--------~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (429)
.. ..+..+ ..... ..++.+.....++..+++.+..+++++..++..++++++.+.|+++ +++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 321 (393)
T 1vjo_A 244 RRRTKVANWYLDMNLLGKYWGSERV-YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVE 321 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHHSTTCC-CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred ccCCCCCceecCcHhhhhhhccCCC-CCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCC
Confidence 00 111100 00000 1125555566667777776655678899999999999999999998 5777654
Q ss_pred CC--CceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEe
Q 014163 370 DV--GVPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 370 ~~--~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.. ..++++|+++. +.+..++.+.|. ++ |+.+..... ......+|+++
T Consensus 322 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~----~~~gi~v~~g~~--~~~~~~iRis~ 371 (393)
T 1vjo_A 322 KEYRLPTLTTVCIPD--GVDGKAVARRLL----NEHNIEVGGGLG--ELAGKVWRVGL 371 (393)
T ss_dssp GGGBCSSEEEEECCT--TCCHHHHHHHHH----HHHCEECEECCG--GGTTTEEEEEC
T ss_pred ccccCCcEEEEEcCC--CCCHHHHHHHHH----hhCCEEEecCcc--ccCCCEEEEeC
Confidence 21 13577787642 356677777777 77 999875421 12345799994
No 27
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=2.9e-27 Score=231.09 Aligned_cols=312 Identities=12% Similarity=0.035 Sum_probs=224.1
Q ss_pred cCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~ 144 (429)
+.++++.+.+++.+.+.. ..++.......++++++++++|.+.+ .+++|+|+|+|+.+++.++..
T Consensus 17 ~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~-----~v~~t~g~t~a~~~~~~~~~~----- 81 (392)
T 2z9v_A 17 PVNAYPEVLRGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSNK-----PVILHGEPVLGLEAAAASLIS----- 81 (392)
T ss_dssp CCCCCHHHHHHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSSC-----CEEESSCTHHHHHHHHHHHCC-----
T ss_pred CcCCCHHHHHHHhccccc-----cccHHHHHHHHHHHHHHHHHhCCCCC-----EEEEeCCchHHHHHHHHHhcC-----
Confidence 445567777777665543 12345556667888999999998642 388999999999999988743
Q ss_pred HHhcCCCCCCcEEEEcCCCchHH--HHHHHhcCceeEEEeccCCccccCHHHHHHHhh--hCCeEEEEeeCCCccccccC
Q 014163 145 RKEQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAILGSTLTGEFED 220 (429)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~ 220 (429)
.+++|++++++|+++ ...++..|++++.+|++++ +.+|+++|+++++ +++++|++++++|+||.+.|
T Consensus 82 --------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 152 (392)
T 2z9v_A 82 --------PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP 152 (392)
T ss_dssp --------TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC
T ss_pred --------CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc
Confidence 135899999999875 4455668999999999875 6899999999995 47899999999999999999
Q ss_pred hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccc
Q 014163 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (429)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~ 300 (429)
+++|.++|+++ |+++|+|++|+.+..+ .++...++|+++.|+||++++|.|+|+++++++ .. +.+
T Consensus 153 l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~-~~l 217 (392)
T 2z9v_A 153 IDAIGALVSAH------GAYLIVDAVSSFGGMK-------THPEDCKADIYVTGPNKCLGAPPGLTMMGVSER-AW-AKM 217 (392)
T ss_dssp HHHHHHHHHHT------TCEEEEECTTTBTTBS-------CCGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-HH-HHH
T ss_pred HHHHHHHHHHc------CCeEEEEcccccCCcc-------cccccccceEEEecCcccccCCCceeEEEECHH-HH-HHh
Confidence 99999999999 9999999999854321 111112489999999999999999999988642 21 111
Q ss_pred ccc---c--CCCC------CCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeC
Q 014163 301 VFH---I--NYLG------SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK 369 (429)
Q Consensus 301 ~~~---~--~~~~------~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (429)
... . .+.. .........++.+.....++.++++.+...|+++..++..++++++.+.|+++ +++++.+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 296 (392)
T 2z9v_A 218 KANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAA 296 (392)
T ss_dssp HTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSS
T ss_pred hhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 110 0 0110 00001112355655556666777777666678889999999999999999998 5877652
Q ss_pred CC---CceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEe
Q 014163 370 DV---GVPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 370 ~~---~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
+. ..++++|+++. +.+..++.+.|. ++ |+.+..... .....++|+++
T Consensus 297 ~~~~~~~~~~~~~~~~--~~~~~~l~~~L~----~~~gi~v~~g~~--~~~~~~lRi~~ 347 (392)
T 2z9v_A 297 SDSIASPTTTAVRTPD--GVDEKALRQAAR----ARYGVVFSSGRG--ETLGKLTRIGH 347 (392)
T ss_dssp SGGGBCTTEEEEECCT--TCCHHHHHHHHH----HHHCEECEECCG--GGTTTEEEEEC
T ss_pred CccccCCceEEEECCC--CCCHHHHHHHHH----hcCCEEEecCCC--CCCCCeEEEeC
Confidence 21 35677887742 356777887777 77 999875421 12345799995
No 28
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=4.7e-27 Score=229.63 Aligned_cols=311 Identities=13% Similarity=0.060 Sum_probs=222.4
Q ss_pred CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
.++|.+.+++.+.+... + ++...+..+++++++++++|++.+ ..+++|+|+|+|+.+++.++..
T Consensus 29 ~~~~~v~~a~~~~~~~~---~--~~~~~~~~~~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~~~~~------- 92 (393)
T 2huf_A 29 NAPQRVLDAMSRPILGH---L--HPETLKIMDDIKEGVRYLFQTNNI----ATFCLSASGHGGMEATLCNLLE------- 92 (393)
T ss_dssp CCCHHHHHHTTSCCCCT---T--SHHHHHHHHHHHHHHHHHHTCCCS----EEEEESSCHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHhhhccC---C--CHHHHHHHHHHHHHHHHHhCCCCC----cEEEEcCcHHHHHHHHHHHHhC-------
Confidence 45577777766554431 2 344566777899999999998642 1378999999999999988743
Q ss_pred hcCCCCCCcEEEEcCCCchHH--HHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccChHH
Q 014163 147 EQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL 223 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~ 223 (429)
.+++|+++.++|++. ...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 93 ------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 165 (393)
T 2huf_A 93 ------DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG-QSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEG 165 (393)
T ss_dssp ------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred ------CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC-CCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHH
Confidence 136899999999883 4456678999999999865 78999999999998 8999999999999999999999
Q ss_pred HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc
Q 014163 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH 303 (429)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~ 303 (429)
|.++|+++ |+++|+|++|+.+..+ .++...++|+++.++||++++|.|+|++++++ +.. +.+...
T Consensus 166 i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~-~~~-~~~~~~ 230 (393)
T 2huf_A 166 VGALCHQH------NCLLIVDTVASLGGAP-------MFMDRWEIDAMYTGSQKVLGAPPGITPVSFSH-RAV-ERYKRR 230 (393)
T ss_dssp HHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCSEEECCSSSTTCCCSSCEEEEECH-HHH-HHHHTC
T ss_pred HHHHHHHc------CCEEEEEcccccCCCC-------cchhhcCccEEEECCCcccccCCCeEEEEECH-HHH-HHHhhc
Confidence 99999999 9999999998753221 11222358999999999988889999998853 221 221111
Q ss_pred ----cCCC----------CCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeC
Q 014163 304 ----INYL----------GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK 369 (429)
Q Consensus 304 ----~~~~----------~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (429)
..|. +.........++.+.....++.++++.+...++++..++..++++++.+.|+++ +++++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 309 (393)
T 2huf_A 231 NTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYAD 309 (393)
T ss_dssp SSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred CCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccC
Confidence 1111 110000011245555556666667776655678889999999999999999998 5777654
Q ss_pred CC-C-ceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEe
Q 014163 370 DV-G-VPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 370 ~~-~-~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
+. . ..++.|+++. +.+..++.+.|. ++ |+.++.... .....++|+++
T Consensus 310 ~~~~~~~~~~~~~~~--~~~~~~~~~~L~----~~~gi~v~~g~~--~~~~~~~Ri~~ 359 (393)
T 2huf_A 310 PKDRLSTVTTIKVPQ--GVDWLKAAQYAM----KTYLVEISGGLG--PTAGQVFRIGL 359 (393)
T ss_dssp GGGBCTTEEEEECCT--TCCHHHHHHHHH----HHHCEECBCCCG--GGTTTEEEEEC
T ss_pred ccccCCcEEEEEcCC--CCCHHHHHHHHH----HhCCEEEecCcc--cccCCEEEEEc
Confidence 21 2 3477787642 456777777776 54 999875421 12345799999
No 29
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=3.2e-26 Score=226.04 Aligned_cols=296 Identities=17% Similarity=0.114 Sum_probs=214.9
Q ss_pred ccCCChHHHHHHHHHHcC--cCCCCC-----ccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHH
Q 014163 64 VTTWMEPECDKLVMASIN--KNYVDM-----DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA 136 (429)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a 136 (429)
.+.+++|.+.+++.+.+. ....+. .......+..+++++++++++|++. ..+.+|+|+++|+.+++.+
T Consensus 30 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggt~a~~~a~~~ 104 (423)
T 3lvm_A 30 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP-----REIVFTSGATESDNLAIKG 104 (423)
T ss_dssp TCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCC-----CeEEEeCChHHHHHHHHHH
Confidence 334556778888887776 433222 1223456677789999999999975 2489999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhc---CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCC
Q 014163 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST 213 (429)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~ 213 (429)
+.+.+.+ .+++|+++.++|+++..++..+ |++++.+|++++ +.+|+++|++++++++++|++++++|
T Consensus 105 l~~~~~~---------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~n 174 (423)
T 3lvm_A 105 AANFYQK---------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN-GIIDLKELEAAMRDDTILVSIMHVNN 174 (423)
T ss_dssp HHHHHTT---------TCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHCCTTEEEEECCSBCT
T ss_pred HHHhhcc---------CCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCC-CccCHHHHHHhcCCCcEEEEEeCCCC
Confidence 8753210 1368999999999988777544 999999999875 88999999999999999999999999
Q ss_pred ccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCC
Q 014163 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 293 (429)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~ 293 (429)
++|.+.|+++|.++|++| |+++|+|++|+.+..+ .+....++|++++++||+ ++|.|+|+++++++
T Consensus 175 ptG~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~ 240 (423)
T 3lvm_A 175 EIGVVQDIAAIGEMCRAR------GIIYHVDATQSVGKLP-------IDLSQLKVDLMSFSGHKI-YGPKGIGALYVRRK 240 (423)
T ss_dssp TTCBBCCHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCTTTSCCSEEEEESTTT-TSCSSCEEEEECBT
T ss_pred CCccccCHHHHHHHHHHc------CCEEEEEhhhhcCCCC-------cChhhcCCCEEEechHHh-cCCCCeEEEEEecc
Confidence 999999999999999999 9999999999864321 122223589999999995 57888999988653
Q ss_pred CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--
Q 014163 294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-- 371 (429)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-- 371 (429)
. . ..+ ...+.++........++.+.....++.++++.+... +++..++..++++++.+.|+++++++++.++.
T Consensus 241 ~-~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 315 (423)
T 3lvm_A 241 P-R-VRI--EAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEE-MATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHG 315 (423)
T ss_dssp T-B-CCC--CCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTB
T ss_pred c-c-CCC--CccccCCcccccccCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 2 2 111 111111111110112455555555566666654433 78889999999999999999998898886542
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHH
Q 014163 372 GVPLVAFSLKDSSAHTVFEISEGLR 396 (429)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~~~~~L~ 396 (429)
..+++.|.+. +.+..++.+.|.
T Consensus 316 ~~~~~~~~~~---~~~~~~l~~~l~ 337 (423)
T 3lvm_A 316 APNILNVSFN---YVEGESLIMALK 337 (423)
T ss_dssp CTTEEEEEET---TSCHHHHHHHTT
T ss_pred CCCeEEEEeC---CCCHHHHHHHHh
Confidence 2357788773 346667777766
No 30
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.96 E-value=7.9e-26 Score=219.92 Aligned_cols=298 Identities=15% Similarity=0.088 Sum_probs=212.0
Q ss_pred CChHHHHHHHHHHcCcCCCCCc----cChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMD----EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~ 142 (429)
++++.+.+++.+.+...+.+.. .+........++++++++++|++.+ .+++|+|+++|+.+++.+++....
T Consensus 12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-----~v~~~~g~t~a~~~~~~~~~~~~~ 86 (384)
T 1eg5_A 12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS-----EIFFTSCATESINWILKTVAETFE 86 (384)
T ss_dssp CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG-----GEEEESCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC-----eEEEECCHHHHHHHHHHhhhhhcc
Confidence 5567788888877754322211 1123456667888999999998642 389999999999999998863100
Q ss_pred HHHHhcCCCCCCcEEEEcCCCchHHHHHH---HhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcccccc
Q 014163 143 QKRKEQGKPYDKPNIVTGANVQVCWEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFE 219 (429)
Q Consensus 143 ~~~~~~g~~~~~~~vi~~~~~h~s~~~~~---~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 219 (429)
. .+++|+++.++|+++...+ +..|++++.+|++++ +.+|+++|++++++++++|++++++|+||.+.
T Consensus 87 ----~-----~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 156 (384)
T 1eg5_A 87 ----K-----RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR-GVVKLEELEKLVDEDTFLVSIMAANNEVGTIQ 156 (384)
T ss_dssp ----T-----TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT-SCBCHHHHHHHCCTTEEEEEEESBCTTTCBBC
T ss_pred ----C-----CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCC-CccCHHHHHHHhCCCCeEEEEECCCCCccccc
Confidence 0 2368999999999876655 678999999998765 78999999999998999999999999999999
Q ss_pred ChHHHHHHHHHhhhccCCC--ccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcc
Q 014163 220 DVKLLHDLLTKKNEETGWD--TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297 (429)
Q Consensus 220 ~l~~I~~la~~~~~~~~~~--~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~ 297 (429)
|+++|.++|+++ + +++|+|++|+.+..+ .++...+.|++++|+||+ ++|.|+|+++++++..+.
T Consensus 157 ~~~~i~~l~~~~------~~~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~sK~-~g~~G~G~~~~~~~~~~~ 222 (384)
T 1eg5_A 157 PVEDVTRIVKKK------NKETLVHVDAVQTIGKIP-------FSLEKLEVDYASFSAHKF-HGPKGVGITYIRKGVPIR 222 (384)
T ss_dssp CHHHHHHHHHHH------CTTCEEEEECTTTTTTSC-------CCCTTTCCSEEEEEGGGG-TSCTTCEEEEECTTSCCC
T ss_pred CHHHHHHHHHhc------CCceEEEEEhhhhcCCcc-------cCchhcCCCEEEecHHHh-cCCCceEEEEEcCCCccc
Confidence 999999999999 9 999999999732211 122212589999999997 467779999886531011
Q ss_pred cccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--CceE
Q 014163 298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVPL 375 (429)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~ 375 (429)
.. +...........++.+.....++..+++.+ .+.+++..++..++++++.+.|++ ++++++.++. ....
T Consensus 223 ~~------~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~ 294 (384)
T 1eg5_A 223 PL------IHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNT 294 (384)
T ss_dssp CS------BCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTE
T ss_pred cc------cccCcccccccCCCCChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCE
Confidence 11 111100000012444444555555666543 346788899999999999999998 5688875432 2356
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhccCceecc
Q 014163 376 VAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 376 v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~ 408 (429)
+.|.+. +.+..++.+.|. ++|+.+..
T Consensus 295 ~~~~~~---~~~~~~~~~~l~----~~gi~v~~ 320 (384)
T 1eg5_A 295 LSVSFP---NIRGSTLQNLLS----GYGIYVST 320 (384)
T ss_dssp EEEECT---TCCHHHHHHHHH----HTTEECBC
T ss_pred EEEEeC---CCCHHHHHHHHh----hCCeEEec
Confidence 777764 245667777776 89999876
No 31
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=2.9e-27 Score=232.23 Aligned_cols=323 Identities=11% Similarity=0.008 Sum_probs=219.6
Q ss_pred cCCChHHHHHHHHHHcCcCCCC----CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~ 140 (429)
+.++++.+.+++.+.+.....+ |..++......+++++++++++|+++ ..+.+|+|+|+++.+++.++...
T Consensus 35 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~al~~~~~~l~~~ 109 (406)
T 3cai_A 35 GMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADP-----GGVVLGADRAVLLSLLAEASSSR 109 (406)
T ss_dssp CCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHHHTGGG
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCC-----CeEEEeCChHHHHHHHHHHHhhc
Confidence 3355677888887776543221 22222345667788999999999864 24899999999999887765211
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCCchHHHHHH----HhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccc
Q 014163 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG 216 (429)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~----~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG 216 (429)
. . .+++|+++.++|.++.... +..|++++.+|++++++.+|+++|++++++++++|++++++|+||
T Consensus 110 ~-----~-----~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG 179 (406)
T 3cai_A 110 A-----G-----LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLG 179 (406)
T ss_dssp G-----B-----TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTC
T ss_pred c-----C-----CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCcc
Confidence 0 0 1368999999998754443 337999999998833478999999999999999999999999999
Q ss_pred cccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeE-EEEEeCCCC
Q 014163 217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG-WVVWRTKDD 295 (429)
Q Consensus 217 ~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g-~l~~~~~~~ 295 (429)
.+.|+++|.++|+++ |+++|+|++|+.+..+ .++...++|++++++||+++ |. +| +++++++ .
T Consensus 180 ~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~-~ 243 (406)
T 3cai_A 180 GVTDLRAMTKLVHDV------GALVVVDHSAAAPYRL-------LDIRETDADVVTVNAHAWGG-PP-IGAMVFRDPS-V 243 (406)
T ss_dssp BBCCCHHHHHHHHHT------TCEEEEECTTTTTTCC-------CCHHHHCCSEEEEEGGGGTS-CS-CEEEEESCHH-H
T ss_pred ccCCHHHHHHHHHHc------CCEEEEEcccccCCCC-------CCchhcCCCEEEeehhhhcC-CC-cCeEEEEehH-H
Confidence 999999999999999 9999999999853321 11111248999999999864 54 78 8776542 2
Q ss_pred cccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHH--------------HHHHHHHHHHHHHHHHHHHHHhC
Q 014163 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE--------------GYKNIMENCMGNARALREGLEKT 361 (429)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~--------------g~~~~~~~~~~~~~~l~~~L~~~ 361 (429)
. +.+.....+.+.........++.+.....++.++++.+... .+++..++..++++++.+.|+++
T Consensus 244 ~-~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 244 M-NSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp H-HTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred H-hhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 22111111111110000012555544555555666554321 47788899999999999999999
Q ss_pred CCeEEeeCC-CCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCC------CC-CCceEEEEEecc
Q 014163 362 GRFEILSKD-VGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPM------SY-PWSTKLRVISHL 426 (429)
Q Consensus 362 ~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~------~~-~~~~~lRi~~~~ 426 (429)
++++++.+. ...++++|.++ +.+..++.+.|. ++|+.++...+. .. .+..++|++++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~----~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~ 388 (406)
T 3cai_A 323 PLVMLIGRPEAQIPVVSFAVH---KVPADRVVQRLA----DNGILAIANTGSRVLDVLGVNDVGGAVTVGLAH 388 (406)
T ss_dssp TTEEECCCCSSBCSEEEEEET---TBCHHHHHHHHH----HTTEECEECCSCHHHHHHTTTTTTCCEEEECCT
T ss_pred CCeEEcCCccccCCEEEEEEC---CcCHHHHHHHHH----HCCcEEecCChHHHHHHcCCCCCCCeEEEEeec
Confidence 888877542 13567888874 245677777777 899988753210 11 124579999874
No 32
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.95 E-value=7.5e-27 Score=227.89 Aligned_cols=313 Identities=12% Similarity=0.057 Sum_probs=224.5
Q ss_pred cCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~ 144 (429)
|..+++.+.+++..... . ..++...++..++++++++++|.+.. ..+.+|+||++|+..++.++..
T Consensus 31 p~~~~~~v~~a~~~~~~---~--~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~gg~~al~~~~~~~~~----- 96 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRMI---G--HMQKEMLQIMEEIKQGIQYVFQTRNP----LTLVVSGSGHCAMETALFNLLE----- 96 (393)
T ss_dssp CCCCCHHHHHHTTCCCC---C--TTSHHHHHHHHHHHHHHHHHHTCCCS----EEEEESCCTTTHHHHHHHHHCC-----
T ss_pred CCCCCHHHHHHhccccc---C--cccHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCcHHHHHHHHHhcCC-----
Confidence 33445666666543221 1 12455567778899999999998742 2378999999999999888743
Q ss_pred HHhcCCCCCCcEEEEcCCCch--HHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccCh
Q 014163 145 RKEQGKPYDKPNIVTGANVQV--CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDV 221 (429)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~--s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l 221 (429)
.+++|+++.+.|+ .+..+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|+||.+.|+
T Consensus 97 --------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 167 (393)
T 3kgw_A 97 --------PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPG-EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPL 167 (393)
T ss_dssp --------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred --------CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccH
Confidence 2368888888876 357788889999999999875 68999999999998 89999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccc
Q 014163 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (429)
Q Consensus 222 ~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~ 301 (429)
++|.++|++| |+++|+|++|+.+..+ .++...++|++++++||+++++.|+|+++++++ .. +.+.
T Consensus 168 ~~i~~l~~~~------~~~li~De~~~~g~~~-------~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~-~~-~~~~ 232 (393)
T 3kgw_A 168 DGFGELCHRY------QCLLLVDSVASLGGVP-------IYMDQQGIDIMYSSSQKVLNAPPGISLISFNDK-AK-YKVY 232 (393)
T ss_dssp TTHHHHHHHT------TCEEEEECTTTTTTSC-------CCTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-HH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEECCccccCcc-------cchhhcCCCEEEecCcccccCCCceeEEEECHH-HH-HHHh
Confidence 9999999999 9999999999743221 122223589999999999988999999987542 11 1111
Q ss_pred cc-cC-------------CCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Q 014163 302 FH-IN-------------YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (429)
Q Consensus 302 ~~-~~-------------~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 367 (429)
.. .. +.++........++.+.....++.++++.+..+++++..++..++++++.+.|+++ +++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 311 (393)
T 3kgw_A 233 SRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFF 311 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred ccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 10 00 11110101111245555666667777777777788999999999999999999998 47776
Q ss_pred eCCC--C-ceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEe
Q 014163 368 SKDV--G-VPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 368 ~~~~--~-~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.++. . ..+++|.++. +.+..++.+.|. ++ |+.+.... ......++|+++
T Consensus 312 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~----~~~gi~v~~g~--~~~~~~~iRi~~ 364 (393)
T 3kgw_A 312 VKDPEIRLPTITTVTVPA--GYNWRDIVSYVL----DHFSIEISGGL--GPTEERVLRIGL 364 (393)
T ss_dssp SSSGGGBCSSEEEEECCT--TBCHHHHHHHHH----HHHCEECBCCC--GGGTTTEEEEEC
T ss_pred cCChhhcCCeEEEEeCCC--CCCHHHHHHHHH----HhCCEEEeCCc--ccCCCCEEEEEe
Confidence 4321 2 3455677642 457778888887 77 99987542 122345799998
No 33
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=5.5e-27 Score=229.69 Aligned_cols=303 Identities=17% Similarity=0.084 Sum_probs=211.1
Q ss_pred CCChHHHHHHHHHHcCcC---CCC-CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHH
Q 014163 66 TWMEPECDKLVMASINKN---YVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (429)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~ 141 (429)
.+++|.+.+++.+.+... ... +.......++.+++++++++++|++. ..+++|+|+++|+.+++.+++...
T Consensus 30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~g~t~al~~~~~~l~~~~ 104 (400)
T 3vax_A 30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEP-----DELIFTSGATESNNIALLGLAPYG 104 (400)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCG-----GGEEEESCHHHHHHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCC-----CcEEEeCCHHHHHHHHHHHHHHhh
Confidence 345677777777666432 111 22223456777789999999999974 248999999999999999876211
Q ss_pred HHHHHhcCCCCCCc-EEEEcCCCchHHHHHHHh---cCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcccc
Q 014163 142 QQKRKEQGKPYDKP-NIVTGANVQVCWEKFARY---FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE 217 (429)
Q Consensus 142 ~~~~~~~g~~~~~~-~vi~~~~~h~s~~~~~~~---~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~ 217 (429)
.. + ++ +|++++++|+++...+.. .|++++.+|++++ +.+|+++|++++++++++|++++++|++|.
T Consensus 105 ~~----~-----gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 174 (400)
T 3vax_A 105 ER----T-----GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPS-GRISVEGVMERLRPDTLLVSLMHVNNETGV 174 (400)
T ss_dssp HH----H-----TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTT-CCCCHHHHHTTCCTTEEEEECCSBCTTTCB
T ss_pred cc----C-----CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCC-CCcCHHHHHHhcCCCceEEEEECCCCCcee
Confidence 11 1 26 899999999987666554 5999999999875 889999999999999999999999999999
Q ss_pred ccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEE-EeCCCCc
Q 014163 218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV-WRTKDDL 296 (429)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~-~~~~~~~ 296 (429)
+.|+++|.++|+++ |+++|+|++|+.+.. ..++... +|+++.+.||+ ++|.|+|+++ ++++...
T Consensus 175 ~~~l~~i~~la~~~------~~~li~D~a~~~~~~-------~~~~~~~-~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~ 239 (400)
T 3vax_A 175 IQPVAELAQQLRAT------PTYLHVDAAQGYGKV-------PGDLTTP-IDMISISGHKI-GAPKGVGALVTRRREEMD 239 (400)
T ss_dssp BCCHHHHHHHHTTS------SCEEEEECTTTTTTS-------GGGGGSC-CSEEEEETGGG-TSCSSCEEEEECBCSSST
T ss_pred eCcHHHHHHHHHhc------CCEEEEEhhhhcCCC-------CcChhhc-CcEEEEeHHHh-CCCCceEEEEEecchhcc
Confidence 99999999999999 999999999985432 1223222 89999999994 5688999998 8763222
Q ss_pred ccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--Cce
Q 014163 297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVP 374 (429)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~ 374 (429)
.........+.++........++.+.....++.++++.+ .++++++.++..++++++.+.|+ .+++++..++. ..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~ 317 (400)
T 3vax_A 240 DERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPH 317 (400)
T ss_dssp TCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTT
T ss_pred ccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCC
Confidence 000001111111111110112444444555555566544 34678899999999999999999 88898876542 135
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhccCceecc
Q 014163 375 LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 375 ~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~ 408 (429)
++.|.+++ .+..++.+ +|. +|+.++.
T Consensus 318 ~~~~~~~~---~~~~~l~~----~L~-~gi~v~~ 343 (400)
T 3vax_A 318 ILNLSFED---VDAEAFLV----TLK-DLVAVAT 343 (400)
T ss_dssp EEEEECTT---CCHHHHHH----HHH-HHHHHTT
T ss_pred EEEEEeCC---CCHHHHHH----HHh-cCcEEEe
Confidence 78887643 34455544 444 6776654
No 34
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.95 E-value=1.4e-26 Score=229.60 Aligned_cols=349 Identities=12% Similarity=0.015 Sum_probs=239.6
Q ss_pred HHHHHHHHHHhhccCCCCCccccccccCCC-hHHHHHHHHHHcCcCC-CCCccChhhHHHHHHHHHHHHHhhCCCCCCCC
Q 014163 39 KEAAYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDK 116 (429)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~ 116 (429)
...++..........+...++|..+.+..+ +|.+.+++.+.+.... ..|....+..++++++.+++.+.+|.+.+.
T Consensus 28 ~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-- 105 (437)
T 3g0t_A 28 IRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPA-- 105 (437)
T ss_dssp HHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--
T ss_pred HHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCc--
Confidence 444444444333334556666777776653 5778888887776544 445555567899999999999888876432
Q ss_pred CCCceEeCCchHHHHHHHHHHH--HHHHHHHHhcCCCCCCc--EEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCH
Q 014163 117 TAVGVGTVGSSEAIMLAGLAFK--RKWQQKRKEQGKPYDKP--NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP 192 (429)
Q Consensus 117 ~~~~~~t~g~t~a~~~al~a~~--~~~~~~~~~~g~~~~~~--~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~ 192 (429)
..+++|+|+++|+.+++.++. . .++ +|+++.++|.++..+++..|++++.+|++++++.+|+
T Consensus 106 -~~i~~t~g~t~al~~~~~~l~~~~-------------~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~ 171 (437)
T 3g0t_A 106 -RACVPTVGSMQGCFVSFLVANRTH-------------KNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLR 171 (437)
T ss_dssp -GGEEEESHHHHHHHHHHHHHTTSC-------------TTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHH
T ss_pred -ccEEEeCCHHHHHHHHHHHHhcCC-------------CCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCH
Confidence 348999999999999988875 3 125 7999999999999999999999999999755578999
Q ss_pred HHHHHHh-hhCCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc-------c
Q 014163 193 VKAVELV-DENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-------W 261 (429)
Q Consensus 193 ~~l~~~i-~~~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-------~ 261 (429)
++|++++ ++++++|++++|+||||.+.+ +++|+++|++| |+++|+|++|+.+... ..... .
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~ 243 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH------DVIVIEDLAYFGMDFR--KDYSHPGEPLYQP 243 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCCTT--SCCCSTTSSCCCC
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchhhcccC--CCcCcccccchhh
Confidence 9999999 778999999999999999876 77789999999 9999999999864321 10000 1
Q ss_pred cc-CCCCeeEEEEcCcccCC-CCCCeEEEEEeCCCCccc-ccc-cccCC---------CCCCCCCceeccCCchhHHHHH
Q 014163 262 DF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPD-ELV-FHINY---------LGSDQPTFTLNFSKGSSQIIAQ 328 (429)
Q Consensus 262 ~~-~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~~~~-~~~-~~~~~---------~~~~~~~~~~~~tr~~~~~~~~ 328 (429)
.+ ...+.+.+..+.+|+++ ++.++|+++.+++ .. + .+. ....+ +... .....++.+ .+.+
T Consensus 244 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~ 316 (437)
T 3g0t_A 244 SVANYTDNYILALSSSKAFSYAGQRIGVLMISGK-LY-EREYPDLEESFGRLRFGEALSSSA--LYALSSGAT---HSAQ 316 (437)
T ss_dssp CGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHH-HH-HCBCGGGHHHHSCSBHHHHHHTTH--HHHHHSSSC---HHHH
T ss_pred ccCCCCCcEEEEEcCccCCCCccceeEEEEECHH-Hh-hhhhhcccccccccchhHHHHHHH--HhhhcCCCC---HHHH
Confidence 22 12456788889999876 7788999987532 22 1 100 00000 0000 000011222 2333
Q ss_pred HHHHHHcCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEe------eCCCCceEEEEEecCCCCCCHHHHHHHHHH
Q 014163 329 YYQFIRLGFEG-----YKNIMENCMGNARALREGLEKTGRFEIL------SKDVGVPLVAFSLKDSSAHTVFEISEGLRK 397 (429)
Q Consensus 329 ~~al~~l~~~g-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~------~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~ 397 (429)
.++...+.... +++..++..++++++.+.|+++ ++++. .++....++.+.++ +.+..++.+.|.
T Consensus 317 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~L~- 391 (437)
T 3g0t_A 317 WGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYK---GMDSSKLIEKFV- 391 (437)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEET---TCCHHHHHHHHH-
T ss_pred HHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecC---CCCHHHHHHHHH-
Confidence 44443333222 7888999999999999999999 58887 34224566667764 457778888887
Q ss_pred HHhccCceecccCCCCCCCceEEEEEecc
Q 014163 398 KLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 398 ~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++|+.+.+...........+|+|++.
T Consensus 392 ---~~gi~v~~~~~~~~~~~~~iRis~~~ 417 (437)
T 3g0t_A 392 ---RYGMCAITLKTTGSKRNEAMRICTSL 417 (437)
T ss_dssp ---HTTEECEESTTTTCCCTTCEEEECSS
T ss_pred ---HcCeEEeeccccCCCCCCEEEEEEec
Confidence 89999876522222222569999874
No 35
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.95 E-value=1.5e-26 Score=226.83 Aligned_cols=328 Identities=16% Similarity=0.143 Sum_probs=228.0
Q ss_pred cccccccCCChHHHHHHHHHHcCcCCCCCcc--C---hhhHHHHHHHHHHHHHhhCC-CCCCCCCCCceEeCCchHHHHH
Q 014163 59 NLASFVTTWMEPECDKLVMASINKNYVDMDE--Y---PVTTELQNRCVNMIAHLFNT-PVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~le~~~~~~la~l~g~-~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
.|....+++.++.+.+++.+.+.....++.. . ........++++++++++|. +. ..+.+|+|+|+|+.+
T Consensus 26 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~g~t~a~~~ 100 (406)
T 1kmj_A 26 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA-----EELVFVRGTTEGINL 100 (406)
T ss_dssp ECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG-----GGEEEESSHHHHHHH
T ss_pred EecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCC-----CeEEEeCChhHHHHH
Confidence 3444445455677888887777543222111 1 12345566788899999998 33 248999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH----HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEE
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA 208 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~ 208 (429)
++.+++.... . .+++|+++.++|++ +..+++..|++++.+|++++ +.+|+++|++++++++++|++
T Consensus 101 ~~~~~~~~~~----~-----~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~v~~ 170 (406)
T 1kmj_A 101 VANSWGNSNV----R-----AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GTLQLETLPTLFDEKTRLLAI 170 (406)
T ss_dssp HHHHTHHHHC----C-----TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SCBCGGGHHHHCCTTEEEEEE
T ss_pred HHHHhhhhcC----C-----CCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-CCcCHHHHHHHhccCCeEEEE
Confidence 9998742100 0 23689999999875 45567788999999999865 789999999999999999999
Q ss_pred eeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEE
Q 014163 209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV 288 (429)
Q Consensus 209 ~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l 288 (429)
++++|+||.+.|+++|.++|++| |+++|+|++|+.+..++ ++...+.|+++.+.||.+ +|.|+|++
T Consensus 171 ~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~g~~~~-------~~~~~~~d~~~~s~~K~~-g~~G~G~~ 236 (406)
T 1kmj_A 171 THVSNVLGTENPLAEMITLAHQH------GAKVLVDGAQAVMHHPV-------DVQALDCDFYVFSGHKLY-GPTGIGIL 236 (406)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTSCC-------CHHHHTCSEEEEEGGGTT-SCTTCEEE
T ss_pred eCCCccccCcCCHHHHHHHHHHc------CCEEEEEchhhcCCCCC-------cccccCCCEEEEEchhcc-CCCCcEEE
Confidence 99999999999999999999999 99999999998643211 111125899999999976 77889999
Q ss_pred EEeCCCCcccccccccCCCCCCC--------------CCcee-ccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Q 014163 289 VWRTKDDLPDELVFHINYLGSDQ--------------PTFTL-NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA 353 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~ 353 (429)
+++++ .. +.+... ..++.. ....+ .++.+....+++.++++.+...++++..++..+++++
T Consensus 237 ~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T 1kmj_A 237 YVKEA-LL-QEMPPW--EGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHY 312 (406)
T ss_dssp EECHH-HH-HHCCCS--SCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEeHH-HH-hhcCCc--ccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 88532 21 211110 000000 00001 2455544555555667766656788899999999999
Q ss_pred HHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCC------CCCCceEEEEEecc
Q 014163 354 LREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPM------SYPWSTKLRVISHL 426 (429)
Q Consensus 354 l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~------~~~~~~~lRi~~~~ 426 (429)
+.+.|+++++++++.+....++++|.++ +.+..++.+.|. ++|+.+...... ......++|++++.
T Consensus 313 l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~----~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~ 384 (406)
T 1kmj_A 313 ALSQLESVPDLTLYGPQNRLGVIAFNLG---KHHAYDVGSFLD----NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAM 384 (406)
T ss_dssp HHHHHTTSTTEEEESCTTCCSEEEEEET---TCCHHHHHHHHH----HTTEECEEECTTCHHHHHHTTCSCEEEEECCT
T ss_pred HHHHHhcCCCeEEecCCCcCCEEEEEEC---CCCHHHHHHHHh----hCCcEEEeccccchHHHHhcCCCCeEEEEeec
Confidence 9999999977888754214678888764 345667777776 899988653110 01124679999874
No 36
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=4.7e-27 Score=226.77 Aligned_cols=312 Identities=13% Similarity=0.048 Sum_probs=224.4
Q ss_pred CChHHHHHHHHHHcCcCCC-CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~ 145 (429)
..++.+.+++.+.+..... ....++...++.+++++++++++|.+.. ..+.+|+|+++|+.+++.++..
T Consensus 14 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~v~~~~g~t~al~~~~~~l~~------ 83 (362)
T 3ffr_A 14 ELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN----YEVLFLASATEIWERIIQNCVE------ 83 (362)
T ss_dssp CCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----EEEEEESCHHHHHHHHHHHHCS------
T ss_pred CCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC----cEEEEeCCchHHHHHHHHhccC------
Confidence 3456677666666554431 1224667778888999999999998632 2488999999999999988743
Q ss_pred HhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHH
Q 014163 146 KEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL 223 (429)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~ 223 (429)
+.+++....|++ +...++..|++++.++.+++ +.+|+++|+ ++++|++|++++++|+||.+.|+++
T Consensus 84 ---------~~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~ 151 (362)
T 3ffr_A 84 ---------KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFG-KGFYPADIT--VPADAEIICLTHNETSSGVSMPVED 151 (362)
T ss_dssp ---------SEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHH
T ss_pred ---------CcEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCC-CCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHH
Confidence 356655555555 44567788999999999765 789999999 7888999999999999999999999
Q ss_pred HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc
Q 014163 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH 303 (429)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~ 303 (429)
|+++|++|+ |+++|+|++|+.+..+ .++ ..+|+++.++||++++|.|+|+++++++ .. +.+...
T Consensus 152 i~~la~~~p-----~~~li~D~a~~~~~~~-------~~~--~~~d~~~~s~~K~~~~~~G~g~~~~~~~-~~-~~~~~~ 215 (362)
T 3ffr_A 152 INTFRDKNK-----DALIFVDAVSSLPYPK-------FDW--TKIDSVFFSVQKCFGLPAGLGVWILNDR-VI-EKSKAL 215 (362)
T ss_dssp HTTSGGGST-----TSEEEEECTTTTTSSC-------CCT--TSCSEEEEETTSTTCCCSCCEEEEEEHH-HH-HHHHHH
T ss_pred HHHHHHhCC-----CCEEEEecccccCCcc-------cCh--hHCcEEEEecccccCCCCceEEEEECHH-HH-HHhhhc
Confidence 999999984 7999999999854321 111 2389999999999988999999887652 21 111111
Q ss_pred c------CCCCCC------CCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC
Q 014163 304 I------NYLGSD------QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV 371 (429)
Q Consensus 304 ~------~~~~~~------~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 371 (429)
. .+.... .......++.+.....++..+++.+..++++++.++..++++++.+.|+++|+++++.+..
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 295 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDA 295 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCG
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCCh
Confidence 0 010000 0001113566656666777778777667789999999999999999999998899876321
Q ss_pred ---CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 372 ---GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 372 ---~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
...+++|.+++ +..++.+.|. ++|+.++.... ..+..++|++++.
T Consensus 296 ~~~~~~~~~~~~~~----~~~~~~~~l~----~~gi~~~~g~~--~~~~~~iRis~~~ 343 (362)
T 3ffr_A 296 KLRSMTTIVANTTM----LPGEINKILE----PFDMAVGAGYG--SKKETQIRIANFP 343 (362)
T ss_dssp GGBCSSEEEEEESS----CHHHHHHHHG----GGTEEEEECSG--GGTTTEEEEECCT
T ss_pred hhcCCceEEEecCC----CHHHHHHHHH----HCCeEEecCcc--ccCCCEEEEECCC
Confidence 34677777743 5667777777 88999875311 2334579999874
No 37
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.95 E-value=5.5e-27 Score=225.53 Aligned_cols=310 Identities=12% Similarity=0.062 Sum_probs=221.3
Q ss_pred CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHH
Q 014163 66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (429)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~ 145 (429)
.+++|.+.+++.+.+.. ..++...+...++++++++++|.+. ..+++|+|+++|+..++.++..
T Consensus 10 ~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~-----~~i~~~~g~t~a~~~~~~~~~~------ 73 (352)
T 1iug_A 10 VRLHPKALEALARPQLH-----HRTEAAREVFLKARGLLREAFRTEG-----EVLILTGSGTLAMEALVKNLFA------ 73 (352)
T ss_dssp CCCCHHHHHHHHSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSS-----EEEEEESCHHHHHHHHHHHHCC------
T ss_pred CCCCHHHHHHhccCCCC-----ccCHHHHHHHHHHHHHHHHHhCCCC-----ceEEEcCchHHHHHHHHHhccC------
Confidence 34567788888776642 1345556666788999999999874 2389999999999999988743
Q ss_pred HhcCCCCCCcEEEEcCCCchHHH--HHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHH
Q 014163 146 KEQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL 223 (429)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~ 223 (429)
.+++|+++.++|+++. ..++..|++++.+|++++ +.+|+++|++ +++++|++++++|+||.+.|+++
T Consensus 74 -------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~ 142 (352)
T 1iug_A 74 -------PGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYG-DTPRPEDVAK---EGYAGLLLVHSETSTGALADLPA 142 (352)
T ss_dssp -------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT-CCCCTTTSCC---SSCSEEEEESEETTTTEECCHHH
T ss_pred -------CCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHhc---cCCcEEEEEEecCCcceecCHHH
Confidence 1368999999999864 555668999999999765 7899998877 67899999999999999999999
Q ss_pred HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc
Q 014163 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH 303 (429)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~ 303 (429)
|.++|++|++ |+++|+|++|+.+..++ ++...++|+++.++|||+++|.|+|+++++++ .. +.+..
T Consensus 143 i~~l~~~~~~----~~~li~D~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~-~~~~~- 208 (352)
T 1iug_A 143 LARAFKEKNP----EGLVGADMVTSLLVGEV-------ALEAMGVDAAASGSQKGLMCPPGLGFVALSPR-AL-ERLKP- 208 (352)
T ss_dssp HHHHHHHHCT----TCEEEEECTTTBTTBCC-------CSGGGTCSEEEEESSSTTCCCSCEEEEEECHH-HH-HTCCC-
T ss_pred HHHHHHhhCC----CCEEEEECCccccCcce-------eccccCeeEEEecCcccccCCCceeEEEECHH-HH-HHhhC-
Confidence 9999999832 79999999997533211 11112589999999999999999999988643 11 11100
Q ss_pred cCCCCC------CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEE
Q 014163 304 INYLGS------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVA 377 (429)
Q Consensus 304 ~~~~~~------~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~ 377 (429)
..+... ........++.+.....++.++++.+... +++..++..++++++.+.|+++ +++++.+....+++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 286 (352)
T 1iug_A 209 RGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAA 286 (352)
T ss_dssp CSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEE
T ss_pred CCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEE
Confidence 000000 00000112455544555666677665544 7888999999999999999998 588775421356778
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 378 FSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 378 f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
|+++. +.+..++.+.|. ++|+.+.... ...+...+|++++.
T Consensus 287 ~~~~~--~~~~~~~~~~l~----~~gi~v~~~~--~~~~~~~iRi~~~~ 327 (352)
T 1iug_A 287 FYLPE--GVPYARVKEAFA----QRGAVIAGGQ--GPLKGKVFRLSLMG 327 (352)
T ss_dssp EECCT--TCCHHHHHHHHH----TTTEECEECC--GGGTTTEEEECCCS
T ss_pred EEcCC--CCCHHHHHHHHH----HCCEEEEeCC--CccCCCEEEEEccc
Confidence 87742 456777777777 8999987542 11234579999873
No 38
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.95 E-value=1.7e-26 Score=225.38 Aligned_cols=327 Identities=13% Similarity=0.039 Sum_probs=230.0
Q ss_pred CCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHH
Q 014163 55 NPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (429)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~a 133 (429)
...++|..+.+.. ++|.+.+++.+.+......|.. ...++++++.+++++++|.+.+. ....+|+|+++|+..+
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~ 106 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKS---EWLIYSPGVIPAISLL 106 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcH---HHeEEcCChHHHHHHH
Confidence 3445566666654 4577889988888765444433 45788999999999999954321 2489999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc---CCccccCHHHHHHHhhhCCeEEEEee
Q 014163 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE---EGYYVMNPVKAVELVDENTICVAAIL 210 (429)
Q Consensus 134 l~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~---~~~~~~d~~~l~~~i~~~~~~v~~~~ 210 (429)
+.++.. .+++|+++.++|.++...++..|++++.+|++ ++++.+|+++|++++++ +++|++++
T Consensus 107 ~~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~ 172 (391)
T 4dq6_A 107 INELTK-------------ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCN 172 (391)
T ss_dssp HHHHSC-------------TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEES
T ss_pred HHHhCC-------------CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEEC
Confidence 888743 13689999999999999999999999999987 23467999999999998 99999999
Q ss_pred CCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CC----CCeeEEEEcCcccCC-C
Q 014163 211 GSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL----PLVKSINVSGHKYGL-V 281 (429)
Q Consensus 211 ~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~----~~~d~~~~s~hK~~~-~ 281 (429)
++||||.+ +++++|+++|++| |+++|+|++|+++.. .......+ .. .....+..+.+|+++ +
T Consensus 173 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 243 (391)
T 4dq6_A 173 PHNPVGRVWTKDELKKLGDICLKH------NVKIISDEIHSDIIL---KKHKHIPMASISKEFEKNTITCMAPTKTFNIA 243 (391)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC---TTCCCCCGGGSCHHHHHTEEEEECSHHHHTCG
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHc------CCEEEeecccccccc---CCCCccCHHHcCccccCcEEEEEechhhccCc
Confidence 99999999 7799999999999 999999999987432 11111111 11 123477889999874 7
Q ss_pred CCCeEEEEEeCCCCcccccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 014163 282 YAGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (429)
Q Consensus 282 p~g~g~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~ 360 (429)
+.++|++++++++.. +.+... ..+.. ++.+.....++.+++.. ..+.+++..++..++++++.+.|++
T Consensus 244 G~r~G~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~ 312 (391)
T 4dq6_A 244 GLQSSYVVLPDEKDY-KLLDDAFTRIDI---------KRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINE 312 (391)
T ss_dssp GGCCEEEECCSHHHH-HHHHHHHHHTTC---------CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHH-HHHHHHHHhhcC---------CCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999887542222 221111 11110 12222333344444443 3455788889999999999999998
Q ss_pred -CCCeEEeeCCCCceEEE-EEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEeccc
Q 014163 361 -TGRFEILSKDVGVPLVA-FSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 361 -~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+|+++++.+ ..+++. +.++.. +.+..++.+.|. ++ |+.+++.......+..++|++++..
T Consensus 313 ~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~----~~~gi~v~~g~~~~~~~~~~iRis~~~~ 375 (391)
T 4dq6_A 313 NMPKLKVRKP--EGTYLLWVDFSAL-GLSDEELESILV----QKGKVALNQGNSFGIGGSGYQRINLACP 375 (391)
T ss_dssp HCTTSEECCC--SBSSEEEEECGGG-CCCHHHHHHHHH----HTTCEECEEGGGGCTTCTTEEEEECCSC
T ss_pred hCCCCEecCC--CccEEEEEEhhhc-CCCHHHHHHHHH----HhCCEEeeCchhhCCCCCCeEEEEEcCC
Confidence 678888754 344444 666431 356778888887 77 9998764211123456799998753
No 39
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.95 E-value=8.7e-26 Score=224.19 Aligned_cols=342 Identities=13% Similarity=0.034 Sum_probs=223.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhccCCC-CCccccccccCCChHH-HHHHH--HHHcCc-CCCCCccChhhHHHHHHHHHH
Q 014163 29 RFKMPDNSMPKEAAYQVINDELMLDGN-PRLNLASFVTTWMEPE-CDKLV--MASINK-NYVDMDEYPVTTELQNRCVNM 103 (429)
Q Consensus 29 ~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~--~~~~~~-~~~~~~~~~~~~~le~~~~~~ 103 (429)
..++| .+.++.++++++......+.. ....++.+.+....|. +.+++ ...+.. +......+++..+++++++++
T Consensus 38 ~~~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (438)
T 1wyu_A 38 PIDLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTM 116 (438)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHH
Confidence 34788 788999999988776543322 1222445554444444 43333 222222 222223577888999999999
Q ss_pred HHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH----HHhcCceeE
Q 014163 104 IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----ARYFEVELK 179 (429)
Q Consensus 104 la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~~~~G~~v~ 179 (429)
+++++|++. ..+.+++|+|.++..++.+++.. .+++|+++.++|+++... ++..|++++
T Consensus 117 la~~~g~~~-----~~i~~~~g~taa~ea~~~a~~~~------------~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 117 IAELAGLEI-----ANASMYDGATALAEGVLLALRET------------GRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp HHHHHTSSE-----ECSCBSSHHHHHHHHHHHHHHHH------------TCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhCCCc-----cceEEeCcHHHHHHHHHHHHhcC------------CCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 999999975 23678999994433333332211 136899999999987654 455899999
Q ss_pred EEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecc-cccccccccCCC
Q 014163 180 EVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAA-SGGFIAPFLYPD 258 (429)
Q Consensus 180 ~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a-~~~~~~~~~~~~ 258 (429)
.+|+ ++ +.+|+++ |+++|++|+++++ |++|.+.|+++|+++|+++ |+|+|+|.. ++.+.. ..
T Consensus 180 ~v~~-~~-~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~------g~~vivd~d~~a~g~~--~~-- 242 (438)
T 1wyu_A 180 TLPL-EG-GRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGA------GALFVAVADPLSLGVL--KP-- 242 (438)
T ss_dssp EECC-BT-TBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHT------TCEEEEECCTTGGGTB--CC--
T ss_pred EEcC-cC-CccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHc------CCEEEEEechhhccCc--CC--
Confidence 9997 33 6788776 6778999999998 9999999999999999999 999996644 321111 11
Q ss_pred CccccCCCCeeEEEEcCcc-----cCCCCCCeEEEEEeCCCCcccccccc-----cCCCCCCCCCcee------------
Q 014163 259 LEWDFRLPLVKSINVSGHK-----YGLVYAGVGWVVWRTKDDLPDELVFH-----INYLGSDQPTFTL------------ 316 (429)
Q Consensus 259 ~~~~~~~~~~d~~~~s~hK-----~~~~p~g~g~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------------ 316 (429)
. +..++|++++++|| |+++| |+|+++++++ .. +.+... ..+.+ ...+.+
T Consensus 243 -~---~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~-~~-~~l~~~~~g~~~~~~~--~~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 243 -P---GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKA-FV-RQLPGRLVSETVDVEG--RRGFILTLQAREQYIRRA 313 (438)
T ss_dssp -H---HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGG-GG-GGCCSCCEEEEEBTTS--CEEEEECCGGGSHHHHGG
T ss_pred -C---ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHH-HH-HhCCCceeccccccCC--Ccceeeeccccccccchh
Confidence 1 11258999999998 55566 9999988653 22 221100 00000 000000
Q ss_pred ccCCch---hHHHHHHHH--HHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHH
Q 014163 317 NFSKGS---SQIIAQYYQ--FIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEI 391 (429)
Q Consensus 317 ~~tr~~---~~~~~~~~a--l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~ 391 (429)
.++.+. ....+++++ +..++.+|++++.++..++++++.+.|+++++++++.+.+...+++|+.. .+..++
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 389 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP----KDPEAV 389 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS----SCHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC----CCHHHH
Confidence 123322 233444444 77778889999999999999999999999977998865324455666542 356778
Q ss_pred HHHHHHHHhccCcee--cccCCCCCCCceEEEEEec
Q 014163 392 SEGLRKKLNRFQVVY--PQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 392 ~~~L~~~l~~~G~~~--~~~~~~~~~~~~~lRi~~~ 425 (429)
.++|. ++|+.+ ... .......+|+|++
T Consensus 390 ~~~L~----~~gi~v~~~~~---~~~~~~~lRis~~ 418 (438)
T 1wyu_A 390 RRALA----ERGFHGATPVP---REYGENLALFAAT 418 (438)
T ss_dssp HHHHH----HTTCCCCEECC---TTSCSSEEEEECC
T ss_pred HHHHH----HCCceeccccc---cccCCCeEEEEec
Confidence 88777 889987 321 1112557999987
No 40
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.95 E-value=2.9e-26 Score=224.30 Aligned_cols=311 Identities=12% Similarity=0.096 Sum_probs=220.7
Q ss_pred CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
.+++.+.+++.+.+.. ++ ++.......++++++++++|.+.+ ..+++|+||++|+..++.++..
T Consensus 28 ~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~g~t~al~~~~~~~~~------- 91 (396)
T 2ch1_A 28 NCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENR----ATMCVSGSAHAGMEAMLSNLLE------- 91 (396)
T ss_dssp CCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCS----CEEEESSCHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCC----cEEEECCcHHHHHHHHHHHhcC-------
Confidence 3456666665544322 12 344445566888899999998752 1378999999999999888743
Q ss_pred hcCCCCCCcEEEEcCCCchHHH--HHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccChHH
Q 014163 147 EQGKPYDKPNIVTGANVQVCWE--KFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL 223 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~~--~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~ 223 (429)
.+++|++++++|.++. .+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|+||.+.|+++
T Consensus 92 ------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 164 (396)
T 2ch1_A 92 ------EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD-RPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG 164 (396)
T ss_dssp ------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred ------CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC-CCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHH
Confidence 1368999999999874 477889999999999864 78999999999998 8999999999999999999999
Q ss_pred HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc
Q 014163 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH 303 (429)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~ 303 (429)
|.++|+++ |+++|+|++|+.+..+ .++...++|+++.++||++++|.|+|++++++. .+ ..+...
T Consensus 165 i~~l~~~~------~~~li~Dea~~~g~~~-------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-~~-~~~~~~ 229 (396)
T 2ch1_A 165 VGQICHQH------DCLLIVDAVASLCGVP-------FYMDKWEIDAVYTGAQKVLGAPPGITPISISPK-AL-DVIRNR 229 (396)
T ss_dssp HHHHHHHT------TCEEEEECTTTBTTBC-------CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-HH-HHHHTC
T ss_pred HHHHHHHc------CCEEEEEccccccCCc-------cchhhcCcCEEEEcCCccccCCCCeEEEEECHH-HH-Hhhhhc
Confidence 99999999 9999999999843221 122223579999999999999999999888642 21 211110
Q ss_pred ----cCC----------CCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeC
Q 014163 304 ----INY----------LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK 369 (429)
Q Consensus 304 ----~~~----------~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (429)
..+ ...........++.+.....++.++++.+..+++++..++..++++++.+.|+++ +++++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 308 (396)
T 2ch1_A 230 RTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVK 308 (396)
T ss_dssp SSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSC
T ss_pred cCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccC
Confidence 000 1100000012245555555666677776656678899999999999999999998 5777654
Q ss_pred CC---CceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEe
Q 014163 370 DV---GVPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 370 ~~---~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.. ...+++|+++. +.+..++.+.|. ++ |+.+..... .....++|+++
T Consensus 309 ~~~~~~~~~~~~~~~~--~~~~~~~~~~L~----~~~gi~v~~g~~--~~~~~~iRi~~ 359 (396)
T 2ch1_A 309 DPRHRLPTVTGIMIPK--GVDWWKVSQYAM----NNFSLEVQGGLG--PTFGKAWRVGI 359 (396)
T ss_dssp SGGGBCTTEEEEECCT--TCCHHHHHHHHH----HHHCBCCBCCCG--GGTTTEEEEEC
T ss_pred CccccCCceEEEEcCC--CCCHHHHHHHHH----HhCCEEEecCcc--ccCCCEEEEEC
Confidence 31 12377787642 456778888776 65 998875321 12345799998
No 41
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.95 E-value=1.1e-25 Score=219.92 Aligned_cols=339 Identities=13% Similarity=0.038 Sum_probs=228.6
Q ss_pred HHHHHHHHHhhccCCCCCccccccccCCC-hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCC
Q 014163 40 EAAYQVINDELMLDGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA 118 (429)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~ 118 (429)
.++++...+ +..+++..++|..+.++.+ +|.+.+++.+.+......|....+..++++++.+++.+.+|.+.+. .
T Consensus 17 ~~~~~~~~~-~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~ 92 (391)
T 3h14_A 17 MDVMEAARR-AEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDP---G 92 (391)
T ss_dssp HHHHHHHHH-HHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCG---G
T ss_pred HHHHHHHHH-HHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCH---H
Confidence 344444333 2235566677777777654 5668888888887654555555568899999999999999965432 3
Q ss_pred CceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC-ccccCHHHHHH
Q 014163 119 VGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVE 197 (429)
Q Consensus 119 ~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~l~~ 197 (429)
.+.+|+|+++|+.+++.++.. .+++|+++.++|.++...++..|++++.+|++++ ++.+|+++|++
T Consensus 93 ~v~~t~g~~~al~~~~~~l~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (391)
T 3h14_A 93 RVVITPGSSGGFLLAFTALFD-------------SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAG 159 (391)
T ss_dssp GEEEESSHHHHHHHHHHHHCC-------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred HEEEecChHHHHHHHHHHhcC-------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHh
Confidence 489999999999999888753 1368999999999999999999999999999743 36789999988
Q ss_pred HhhhCCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEc
Q 014163 198 LVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS 274 (429)
Q Consensus 198 ~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s 274 (429)
+ ++++|++++++||||.+.| +++|+++|++| |+++|+|++|+++.. .............+.+..+
T Consensus 160 ~---~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~i~~~s 227 (391)
T 3h14_A 160 L---DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ------GASFISDEIYHGIEY---EAKAVTALELTDECYVINS 227 (391)
T ss_dssp S---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS---SSCCCCGGGTCSSSEEEEE
T ss_pred c---CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEECcchhccc---CCCCcChhhcCCCEEEEEe
Confidence 7 7899999999999999976 88999999999 999999999987432 1111111122345677778
Q ss_pred CcccCC-CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Q 014163 275 GHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA 353 (429)
Q Consensus 275 ~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~ 353 (429)
.+|+++ ++.++|+++.+++ +.+.+........ ++.+.....++.+++. ..+.+++..++..+++++
T Consensus 228 ~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~ 294 (391)
T 3h14_A 228 FSKYFSMTGWRVGWMVVPED--QVRVVERIAQNMF---------ICAPHASQVAALAALD--CDAELQANLDVYKANRKL 294 (391)
T ss_dssp SSSTTCCTTSCCEEEECCGG--GHHHHHHHHHHTT---------CCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred chhccCCccceeEEEEeCHH--HHHHHHHHHhhhc---------cCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHH
Confidence 889875 7788999886432 2222211111000 1222222222333333 567788889999999999
Q ss_pred HHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCC-CCceEEEEEecc
Q 014163 354 LREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSY-PWSTKLRVISHL 426 (429)
Q Consensus 354 l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~-~~~~~lRi~~~~ 426 (429)
+.+.|++++ +..+.++....++.+.++. .+.+..++.+.|. ++ |+.+++...... .+..++|++++.
T Consensus 295 l~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~----~~~gi~v~~g~~~~~~~~~~~iRis~~~ 363 (391)
T 3h14_A 295 MLERLPKAG-FTRIAPPDGAFYVYADVSD-LTDDSRAFAAEIL----EKAGVAVTPGLDFDPERGAGTLRFSYAR 363 (391)
T ss_dssp HHHHHHHHT-CCCBCCCCBTTEEEEECTT-TCSCHHHHHHHHH----HHHCEECEEGGGTCTTTGGGEEEEECCS
T ss_pred HHHHHHHcC-CCcccCCCeeEEEEEecCc-cCCCHHHHHHHHH----HHCCEEEcCchhhCCCCCCCeEEEEecC
Confidence 999999986 4443333233344445542 1357778887776 54 999876521111 346789999875
No 42
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.95 E-value=2e-26 Score=224.98 Aligned_cols=327 Identities=10% Similarity=0.004 Sum_probs=226.3
Q ss_pred CCCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHH
Q 014163 53 DGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~ 131 (429)
.++..++|..+.+.. +++.+.+++.+.++.....|...++..++++++.+++.+.+|++.+. ..+.+|+|+++|+.
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA---DNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEcCCHHHHHH
Confidence 345555666666654 45668888877775544445555678999999999999988975422 24889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEee
Q 014163 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL 210 (429)
Q Consensus 132 ~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~ 210 (429)
+++.++.. .+++|++++++|.++..+++..|++++.+|.++ +++.+|+++|++++++++++|++++
T Consensus 105 ~~~~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 171 (388)
T 1j32_A 105 NLMLAMIE-------------PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNT 171 (388)
T ss_dssp HHHHHHCC-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHhcC-------------CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeC
Confidence 99988743 136899999999999999999999999999874 2378999999999998899999999
Q ss_pred CCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc--cccC--CCCeeEEEEcCcccCC-CC
Q 014163 211 GSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFR--LPLVKSINVSGHKYGL-VY 282 (429)
Q Consensus 211 ~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~--~~~~d~~~~s~hK~~~-~p 282 (429)
++||||.+ +++++|+++|+++ |+++|+|++|+++.. ...... ..+. ..+.|.+..+.||+++ ++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 243 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEA------GLWVLSDEIYEKILY--DDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCCCHHHccccccCCEEEEeechhccCCcc
Confidence 99999998 4599999999999 999999999987532 111110 1111 1247899999999874 44
Q ss_pred CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHh
Q 014163 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEGYKNIMENCMGNARALREGLEK 360 (429)
Q Consensus 283 ~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l--~~~g~~~~~~~~~~~~~~l~~~L~~ 360 (429)
.++|+++.+++ +.+.+........ .+. ..+.+++++..+ +.+.+++..++..++++++.+.|++
T Consensus 244 ~r~G~~~~~~~--~~~~l~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 309 (388)
T 1j32_A 244 WRVGFLAGPVP--LVKAATKIQGHST---------SNV---CTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA 309 (388)
T ss_dssp TCCEEEECCHH--HHHHHHHHHHTTT---------CSC---CHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEeCHH--HHHHHHHHHhhcc---------cCC---CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56999886432 2222211111100 111 122333333333 3456788889999999999999999
Q ss_pred CCCeEEeeCCCCceEEE-EEecCCCCCCHHHHHHHHHHHHhc-cCceecccCCCCCCCceEEEEEecc
Q 014163 361 TGRFEILSKDVGVPLVA-FSLKDSSAHTVFEISEGLRKKLNR-FQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 361 ~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~~~~~L~~~l~~-~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++++++..+ ..++++ +.+... +.+..++.+.|. + +|+.+....... ...++|+++++
T Consensus 310 ~~g~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~----~~~gi~v~~g~~~~--~~~~iRis~~~ 368 (388)
T 1j32_A 310 MPGLECPKP--DGAFYMFPSIAKT-GRSSLDFCSELL----DQHQVATVPGAAFG--ADDCIRLSYAT 368 (388)
T ss_dssp CTTCBCCCC--CBTTEECCBCGGG-TCCHHHHHHHHH----HHHCEECEEGGGGT--CTTBEEEECCS
T ss_pred CCCCcccCC--CeeEEEEEecCCC-CCCHHHHHHHHH----HhCCEEEeChhhhC--CCCcEEEEecC
Confidence 877876643 233333 334311 246667777776 5 699987541111 13459999864
No 43
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=3.5e-26 Score=222.06 Aligned_cols=312 Identities=12% Similarity=0.069 Sum_probs=218.4
Q ss_pred CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
.++|.+.+++.+.+.. ..++...++.+++++++++++|++.+. ....+|+||++|+.+++.++..
T Consensus 29 ~~~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~~~ggt~al~~~~~~~~~------- 93 (376)
T 3f0h_A 29 MSSEEVRAIGAEQVPY-----FRTTEFSSTMLENEKFMLEYAKAPEGS---KAVFMTCSSTGSMEAVVMNCFT------- 93 (376)
T ss_dssp CCCHHHHHHHTSCCCC-----CSSHHHHHHHHHHHHHHHHHHTCCTTC---EEEEESSCHHHHHHHHHHHHCC-------
T ss_pred CCcHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCChhHHHHHHHHhccC-------
Confidence 4456677766544321 124566678889999999999997421 1244588999999999888753
Q ss_pred hcCCCCCCcEEEEcCCCchHH--HHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHH
Q 014163 147 EQGKPYDKPNIVTGANVQVCW--EKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLL 224 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~--~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I 224 (429)
.+++|+++.+.+++. ...+...|++++.++++.+ +.+|+++|++++++++++|++++++|++|.+.|+++|
T Consensus 94 ------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i 166 (376)
T 3f0h_A 94 ------KKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHG-KKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMI 166 (376)
T ss_dssp ------TTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTT-CCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHH
T ss_pred ------CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCC-CCCCHHHHHHhhccCceEEEEecccCCcceecCHHHH
Confidence 135788887766553 3457778999999999865 7899999999999899999999999999999999999
Q ss_pred HHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccc--
Q 014163 225 HDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF-- 302 (429)
Q Consensus 225 ~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~-- 302 (429)
+++|++| |+++|+|++|+.+..+ .++...++|++++++||+++++.|+|+++++++ .. +.+..
T Consensus 167 ~~l~~~~------~~~li~D~~~~~~~~~-------~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~-~~~~~~~ 231 (376)
T 3f0h_A 167 GEFCKKN------NMFFVCDCVSAFLADP-------FNMNECGADVMITGSQKVLACPPGISVIVLAPR-GV-ERVEKSK 231 (376)
T ss_dssp HHHHHHT------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHH-HH-HHHHTCC
T ss_pred HHHHHHc------CCEEEEEcCccccCcc-------ccccccCccEEEecCcccccCCCceEEEEECHH-HH-HHhhcCC
Confidence 9999999 9999999999865431 112112479999999999988899999877542 21 11111
Q ss_pred ccCC-CCCC-----CCCceeccCCchhHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceE
Q 014163 303 HINY-LGSD-----QPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPL 375 (429)
Q Consensus 303 ~~~~-~~~~-----~~~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 375 (429)
...+ .... ........+.+.....++.++++.+... +++++.++..++++++.+.|++++ +++..+.....+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~ 310 (376)
T 3f0h_A 232 VRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPANGV 310 (376)
T ss_dssp CCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBBTTE
T ss_pred CCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccCceE
Confidence 0111 0000 0000011344334446677777777666 689999999999999999999986 877654323445
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEec
Q 014163 376 VAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 376 v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+.+... +.+..++.+.|. ++ |+.++.... ..+..++|++++
T Consensus 311 ~~~~~~---~~~~~~l~~~l~----~~~gi~v~~g~~--~~~~~~lRis~~ 352 (376)
T 3f0h_A 311 TSVHPT---TANAYDIFLKLK----DEYGIWICPNGG--EMKDTIFRVGHI 352 (376)
T ss_dssp EEEEES---SSCHHHHHHHHH----HHSSEECEECCG--GGTTTCEEEECC
T ss_pred EEEeCC---CCCHHHHHHHHH----HhCCEEEecCcc--ccCCCEEEEecC
Confidence 555532 456778888887 77 999875421 123456999985
No 44
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.95 E-value=6.2e-26 Score=219.09 Aligned_cols=316 Identities=14% Similarity=0.042 Sum_probs=216.4
Q ss_pred cCCChHHHHHHHHHHcCcCCCCCccChhhH-HHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYVDMDEYPVTT-ELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQ 143 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~ 143 (429)
|..++|.+.+++.+.+. + .++... ....++++++++++|.+.+. ..+++|+|+++|+.+++.+++.+
T Consensus 12 p~~~~~~v~~a~~~~~~----~--~~~~~~~~~~~~l~~~la~~~g~~~~~---~~v~~~~g~t~a~~~~~~~~~~~--- 79 (366)
T 1m32_A 12 PLTTSRTVKEAMLFDSC----T--WDDDYNIGVVEQIRQQLTALATASEGY---TSVLLQGSGSYAVEAVLGSALGP--- 79 (366)
T ss_dssp SCCCCHHHHHTTCCCCC----T--TSHHHHTTTHHHHHHHHHHHHCSSSSE---EEEEEESCHHHHHHHHHHHSCCT---
T ss_pred CcCCCHHHHHHHhhhhc----C--CCHHHHHHHHHHHHHHHHHHhCCCCcC---cEEEEecChHHHHHHHHHHhcCC---
Confidence 44456777776654331 1 122222 34456777889999943210 13899999999999999887431
Q ss_pred HHHhcCCCCCCcEEE-EcCCCchH-HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh--CCeEEEEeeCCCcccccc
Q 014163 144 KRKEQGKPYDKPNIV-TGANVQVC-WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE--NTICVAAILGSTLTGEFE 219 (429)
Q Consensus 144 ~~~~~g~~~~~~~vi-~~~~~h~s-~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~ 219 (429)
+++|+ .++++|.+ +..+++..|++++.+|++++ +.+|+++|++++++ ++++|++++++|+||.+.
T Consensus 80 ----------gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~ 148 (366)
T 1m32_A 80 ----------QDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV-ARPDVQAIDAILNADPTISHIAMVHSETTTGMLN 148 (366)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEETTTTEEC
T ss_pred ----------CCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC-CCCCHHHHHHHHhcCCCeEEEEEecccCCcceec
Confidence 24554 55678875 67788889999999999764 78999999999987 478899999999999999
Q ss_pred ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccc
Q 014163 220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299 (429)
Q Consensus 220 ~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~ 299 (429)
|+++|.++|++| |+++|+|++|+.+..+ .++...++|+++.+.||++++|.|+|+++++++ .. +.
T Consensus 149 ~l~~i~~l~~~~------~~~li~Dea~~~~~~~-------~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~-~~-~~ 213 (366)
T 1m32_A 149 PIDEVGALAHRY------GKTYIVDAMSSFGGIP-------MDIAALHIDYLISSANKCIQGVPGFAFVIAREQ-KL-AA 213 (366)
T ss_dssp CHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHH-HH-TT
T ss_pred CHHHHHHHHHHc------CCEEEEECCccccCcC-------ccccccCccEEEecCcccccCCCceEEEEECHH-HH-Hh
Confidence 999999999999 9999999999854321 122222589999999999988999999998753 21 21
Q ss_pred cccc-cCCCCCC--------CCCceeccCCchhHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHhCCCeEEeeC
Q 014163 300 LVFH-INYLGSD--------QPTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENCMGNARALREGLEKTGRFEILSK 369 (429)
Q Consensus 300 ~~~~-~~~~~~~--------~~~~~~~~tr~~~~~~~~~~al~~l~~~g-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 369 (429)
+... ..+.... .......++.+.....++.++++.+...| +++..++..++++++.+.|+++ +++++.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 292 (366)
T 1m32_A 214 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLD 292 (366)
T ss_dssp CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccC
Confidence 1110 1111000 00000013444445556667777665555 7889999999999999999998 5776644
Q ss_pred C-CCce-EEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 370 D-VGVP-LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 370 ~-~~~~-~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
+ ...+ ++.|+++...+.+..++.+.|. ++|+.+..... .+...+|++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~gi~v~~~~~---~~~~~iRi~~~~ 344 (366)
T 1m32_A 293 DELHSPIITAFYSPEDPQYRFSEFYRRLK----EQGFVIYPGKV---SQSDCFRIGNIG 344 (366)
T ss_dssp GGGBCSSEEEEECCCCTTCCHHHHHHHHH----HTTEECEECCC---SSSCEEEEECCS
T ss_pred chhcCceEEEEEcCccCCCCHHHHHHHHH----HCCEEEECCcC---CCCCEEEEecCC
Confidence 2 1234 7777764211356677777777 88998865421 145679999873
No 45
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.95 E-value=6.1e-26 Score=221.38 Aligned_cols=330 Identities=14% Similarity=0.030 Sum_probs=228.3
Q ss_pred CccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 57 RLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
.++|..+.+.. +++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+.+ ..+.+|+|+++|+.+++.
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~--~~v~~~~g~~~a~~~~~~ 109 (386)
T 1u08_A 32 AINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDAD--SDITVTAGATEALYAAIT 109 (386)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTT--TTEEEESSHHHHHHHHHH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CCEEEcCChHHHHHHHHH
Confidence 34555655543 456788888877765333455555788999999999999889753221 048999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcc
Q 014163 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT 215 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t 215 (429)
++.. .+++|+++.++|.++...++..|++++.+|.+++++.+|+++|++++++++++|++++++|||
T Consensus 110 ~~~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt 176 (386)
T 1u08_A 110 ALVR-------------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPS 176 (386)
T ss_dssp HHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred HhCC-------------CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCC
Confidence 8743 136899999999999999999999999999875447899999999998889999999999999
Q ss_pred ccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCC-cc-ccC-CCCeeEEEEcCcccCC-CCCCeEEE
Q 014163 216 GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-DFR-LPLVKSINVSGHKYGL-VYAGVGWV 288 (429)
Q Consensus 216 G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~~~-~~~~d~~~~s~hK~~~-~p~g~g~l 288 (429)
|.+.| +++|+++|++| |+++|+|++|+.+.. ..... .. .+. ..+.|.+..+.+|+++ ++.++|++
T Consensus 177 G~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 248 (386)
T 1u08_A 177 ATVWQQADFAALWQAIAGH------EIFVISDEVYEHINF--SQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYC 248 (386)
T ss_dssp CCCCCHHHHHHHHHHHTTS------CCEEEEECTTTTCBC--CSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred CccCCHHHHHHHHHHHHHc------CcEEEEEcccccccc--CCCCCcChhcccCccCcEEEEecchhhcCCcccceEEE
Confidence 99864 78999999999 999999999987432 11110 11 110 1357899999999876 55669998
Q ss_pred EEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEee
Q 014163 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILS 368 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 368 (429)
++++ + +.+.+.....+.. ++.+.....++..+++.. .+.+++..++..++++++.+.|++.+ +++..
T Consensus 249 ~~~~-~-~~~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 315 (386)
T 1u08_A 249 VAPA-P-ISAEIRKVHQYLT---------FSVNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESR-LEILP 315 (386)
T ss_dssp ECCH-H-HHHHHHHHHHHHT---------SSCCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSS-CEECC
T ss_pred EcCH-H-HHHHHHHHHHhhc---------cCCChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCC-CeecC
Confidence 8753 2 2222211111100 122222333344444433 45678888899999999999999884 88764
Q ss_pred CCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc--CCCCCCCceEEEEEecc
Q 014163 369 KDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK--LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 369 ~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~~~~~~lRi~~~~ 426 (429)
+. ...++.++++.....+..++.+.|.+ ++|+.+.+. +.....+..++|++++.
T Consensus 316 ~~-~g~~~~~~~~~~~~~~~~~~~~~l~~---~~gi~v~~g~~f~~~~~~~~~iRis~~~ 371 (386)
T 1u08_A 316 CE-GTYFLLVDYSAVSTLDDVEFCQWLTQ---EHGVAAIPLSVFCADPFPHKLIRLCFAK 371 (386)
T ss_dssp CC-BSSEEEEECTTTCCSCHHHHHHHHHH---HSCEECEEGGGGCSSCCCSCEEEEECCS
T ss_pred CC-ceEEEEEecCCCCCCCHHHHHHHHHH---hCCEEEeCchHhCCCCCCCCEEEEEEcC
Confidence 43 34566777643111456677776641 579998754 22111345689999875
No 46
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.95 E-value=1.1e-25 Score=219.68 Aligned_cols=325 Identities=13% Similarity=0.036 Sum_probs=223.2
Q ss_pred CCCCccccccccCCC-hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
+...++|..+.++++ ++.+.+++...+......|....+..++++++.+++.+.+|++.+. ..+.+|+|+++|+.+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP---EETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG---GGEEEESHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---HHEEEcCChHHHHHH
Confidence 344456777777543 4667888777765444445455578899999999999888875432 248899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEeeC
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG 211 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~ 211 (429)
++.++.+ .+++|+++.++|..+..+++..|++++.+|+++ +++.+|+++|++++++++++|+++++
T Consensus 107 ~~~~l~~-------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p 173 (385)
T 1b5p_A 107 LFQAILD-------------PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSP 173 (385)
T ss_dssp HHHHHCC-------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESS
T ss_pred HHHHhcC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCC
Confidence 9988753 236899999999999999999999999999974 34789999999999988999999999
Q ss_pred CCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc-cccCCCCeeEEEEcCcccCC-CCCCeE
Q 014163 212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGL-VYAGVG 286 (429)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~s~hK~~~-~p~g~g 286 (429)
+||||.+.+ +++|+++|++| ++++|+|++|+.+.. ..+... ..+.- ..+.+..+.+|+++ ++.++|
T Consensus 174 ~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG 244 (385)
T 1b5p_A 174 NNPTGAVYPKEVLEALARLAVEH------DFYLVSDEIYEHLLY--EGEHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIG 244 (385)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS--SSCCCCGGGTCT-TTEEEEEESTTTTTCGGGCCE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCCHHHcCC-CCEEEEEechhhcCCcccceE
Confidence 999999855 89999999999 999999999987432 111001 11111 35677778889764 567799
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014163 287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-----GFEGYKNIMENCMGNARALREGLEKT 361 (429)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l-----~~~g~~~~~~~~~~~~~~l~~~L~~~ 361 (429)
+++.++ + +.+.+........ .+. ..+.++++...+ +.+.+++..++..++++++.+.|+++
T Consensus 245 ~~~~~~-~-~~~~l~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (385)
T 1b5p_A 245 YACGPK-E-VIKAMASVSRQST---------TSP---DTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL 310 (385)
T ss_dssp EEECCH-H-HHHHHHHHHHTTT---------CSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCH-H-HHHHHHHHHhhcc---------CCC---CHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 988643 2 2122211111100 011 222333333333 24456778888899999999999988
Q ss_pred CCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 362 GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++++..+. ....+.+.+.. .+.+..++.+.|. ++|+.+.+...... ..++|++++.
T Consensus 311 -g~~~~~~~-~~~~~~~~~~~-~~~~~~~l~~~l~----~~gv~v~~g~~f~~--~~~iRis~~~ 366 (385)
T 1b5p_A 311 -GLKAVRPS-GAFYVLMDTSP-IAPDEVRAAERLL----EAGVAVVPGTDFAA--FGHVRLSYAT 366 (385)
T ss_dssp -TCCBCCCS-BTTEEEEECTT-TCSSHHHHHHHHH----HTTEECEESGGGTC--TTEEEEECCS
T ss_pred -CCeecCCC-eeEEEEEecCC-CCCCHHHHHHHHH----HCCeEEecccccCC--CCeEEEEecC
Confidence 57765432 22233344432 1356677777777 89999876411111 3579999874
No 47
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.95 E-value=1.2e-26 Score=227.85 Aligned_cols=327 Identities=12% Similarity=-0.026 Sum_probs=229.1
Q ss_pred CccccccccC--CChHHHHHHHHHHcCcCC-CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHH
Q 014163 57 RLNLASFVTT--WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (429)
Q Consensus 57 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~a 133 (429)
.++|..+.+. +++|.+.+++.+.+.... ..|....+..++++++.+++++++|.+.+.. ...++|+|+++|+..+
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~--~~i~~~~g~~~a~~~~ 118 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDAR--DGLIITPGTQGALFLA 118 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTT--TSEEEESHHHHHHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CcEEEeCCcHHHHHHH
Confidence 3566665554 355678888877776432 2345566788999999999999999864221 1389999999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc-----CCccccCHHHHHHHhhhCCeEEEE
Q 014163 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-----EGYYVMNPVKAVELVDENTICVAA 208 (429)
Q Consensus 134 l~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-----~~~~~~d~~~l~~~i~~~~~~v~~ 208 (429)
+.++.. .++.|+++.++|.++..+++..|++++.+|.+ ++++.+|+++|++++++++++|++
T Consensus 119 ~~~l~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~ 185 (407)
T 3nra_A 119 VAATVA-------------RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLF 185 (407)
T ss_dssp HHTTCC-------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEE
T ss_pred HHHhCC-------------CCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEE
Confidence 887643 23689999999999999999999999999983 234789999999999999999999
Q ss_pred eeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-----CCCCeeEEEEcCcccCC
Q 014163 209 ILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-----RLPLVKSINVSGHKYGL 280 (429)
Q Consensus 209 ~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-----~~~~~d~~~~s~hK~~~ 280 (429)
++++||||.+.+ +++|+++|++| |+++|+|++|+.+.. .......+ .....+.+..+.+|+++
T Consensus 186 ~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~---~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 256 (407)
T 3nra_A 186 SNPNNPAGVVYSAEEIGQIAALAARY------GATVIADQLYSRLRY---AGASYTHLRAEAAVDAENVVTIMGPSKTES 256 (407)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBC---TTCCCCCGGGCTTSCGGGEEEEECSSSTTC
T ss_pred cCCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEcccccccc---CCCCCCChhhcCcccCCcEEEEeCcccccC
Confidence 999999999988 99999999999 999999999987542 11111111 11346788889999876
Q ss_pred -CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHH
Q 014163 281 -VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--FEGYKNIMENCMGNARALREG 357 (429)
Q Consensus 281 -~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~--~~g~~~~~~~~~~~~~~l~~~ 357 (429)
++.++|+++.+. + +.+.+........ .+. ..+.+.++...+. .+.+++..++..++++++.+.
T Consensus 257 ~~G~r~G~~~~~~-~-~~~~l~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 322 (407)
T 3nra_A 257 LSGYRLGVAFGSR-A-IIARMEKLQAIVS---------LRA---AGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHV 322 (407)
T ss_dssp CGGGCCEEEEECH-H-HHHHHHHHHHHHT---------SSS---CHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCH-H-HHHHHHHHHhhhc---------cCC---ChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 678899987642 2 2122111111000 111 1223444444443 355788889999999999999
Q ss_pred HHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 358 LEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
|+++++++++.+. ...++.+.+.. .+.+..++.+.|.+ ++|+.+.+.......+..++|++++.
T Consensus 323 L~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~---~~gi~v~~g~~~~~~~~~~iRis~~~ 386 (407)
T 3nra_A 323 LRGCEGVFARTPQ-AGSYLFPRLPK-LAVAPAEFVKILRL---QAGVVVTPGTEFSPHTADSVRLNFSQ 386 (407)
T ss_dssp HHTSTTCBCCCCS-BSSEECCBCCC-BSSCHHHHHHHHHH---HHCEECEEGGGTCTTCTTBEEEECCS
T ss_pred HhcCCCceeccCC-eeEEEEEeCCC-CCCCHHHHHHHHHH---hCCEEEeCchhhCCCCCCEEEEEeCC
Confidence 9999778776443 33445445432 14577788888761 45999876522222345679999875
No 48
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.95 E-value=2.1e-26 Score=230.41 Aligned_cols=289 Identities=10% Similarity=-0.033 Sum_probs=211.9
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH----H
Q 014163 92 VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC----W 167 (429)
Q Consensus 92 ~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s----~ 167 (429)
....+.+++++++++++|+++ ..+++|+|+|+++.+++.++.+. | ..+++|+++.++|++ +
T Consensus 108 ~~~~~~~~l~~~la~~~g~~~-----~~v~~t~g~t~al~~~~~~~~~~--------~--~~~~~Vl~~~~~~~s~~~~~ 172 (465)
T 3e9k_A 108 PWITGDESIVGLMKDIVGANE-----KEIALMNALTVNLHLLMLSFFKP--------T--PKRYKILLEAKAFPSDHYAI 172 (465)
T ss_dssp CGGGTTHHHHGGGHHHHTCCG-----GGEEECSCHHHHHHHHHHHHCCC--------C--SSSCEEEEETTCCHHHHHHH
T ss_pred cHHHhHHHHHHHHHHHcCCCc-----CCEEEECCHHHHHHHHHHHhccc--------c--CCCCEEEEcCCcCCchHHHH
Confidence 344555678899999999975 24899999999999988887531 1 123579999999987 5
Q ss_pred HHHHHhcCceeE-----EEeccCCccccCHHHHHHHhh---hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCc
Q 014163 168 EKFARYFEVELK-----EVKLEEGYYVMNPVKAVELVD---ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239 (429)
Q Consensus 168 ~~~~~~~G~~v~-----~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~ 239 (429)
...++..|+++. .+|.+. ++.+|+++|+++|+ +++++|++++++|+||.+.|+++|.++|+++ |+
T Consensus 173 ~~~~~~~G~~~~~~~v~~~~~~~-~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~------g~ 245 (465)
T 3e9k_A 173 ESQLQLHGLNIEESMRMIKPREG-EETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAK------GC 245 (465)
T ss_dssp HHHHHHTTCCHHHHEEEECCCTT-CSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHT------TC
T ss_pred HHHHHHcCCcceeeeEEEecCCC-CCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHc------CC
Confidence 557778898853 334444 47899999999997 5789999999999999999999999999999 99
Q ss_pred cEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEEEEEeCCCCcccccccccCCCCCC-------C
Q 014163 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSD-------Q 311 (429)
Q Consensus 240 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~-------~ 311 (429)
++|+|++|+.+..+ .++...++|++++++||++. +|.|+|+++++++ ...........|.++. .
T Consensus 246 ~vi~D~a~~~g~~~-------~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~ 317 (465)
T 3e9k_A 246 YVGFDLAHAVGNVE-------LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEK-HAHTIKPALVGWFGHELSTRFKMD 317 (465)
T ss_dssp EEEEECTTTTTTSC-------CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGG-GTTTSCCSSCCGGGBCHHHHTTCC
T ss_pred EEEEEhhhhcCCcC-------CchhhcCCCEEEECcccccccCCCceEEEEEcHH-HHhhcCCcccCccCCCCCcccccC
Confidence 99999999865432 12222368999999999995 6778899888643 2211111111111110 0
Q ss_pred --CC------ceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC----------CCeEEeeCCC--
Q 014163 312 --PT------FTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----------GRFEILSKDV-- 371 (429)
Q Consensus 312 --~~------~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~~~~-- 371 (429)
.. ....||.+...++++.++++.+...+++++.++..++++++.+.|+++ ++++++.+..
T Consensus 318 ~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~ 397 (465)
T 3e9k_A 318 NKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVE 397 (465)
T ss_dssp SCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGG
T ss_pred CCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHh
Confidence 00 001257777788889999988877789999999999999999999985 6798886542
Q ss_pred -CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 372 -GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 372 -~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
..++++|+++. +..++.+.|. ++|+.++. ....++|+++
T Consensus 398 ~~g~~~~~~~~~----~~~~l~~~L~----~~Gi~v~~------~~~~~iRis~ 437 (465)
T 3e9k_A 398 ERGCQLTITFSV----PNKDVFQELE----KRGVVCDK------RNPNGIRVAP 437 (465)
T ss_dssp GBCSCEEEEECC----TTCCHHHHHH----TTTEECEE------ETTTEEEEBC
T ss_pred hcccEEEEEecC----CHHHHHHHHH----HCCEEEec------CCCCEEEEeC
Confidence 36788888752 3356777777 99998752 2345699987
No 49
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.95 E-value=9.8e-26 Score=219.39 Aligned_cols=328 Identities=9% Similarity=-0.012 Sum_probs=226.3
Q ss_pred CCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHH
Q 014163 55 NPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (429)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~a 133 (429)
...++|..+.+.. ++|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ....+|+|+++|+.++
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~ 98 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTLP--PENIGDIICNWTKKQYNWDIQK---EWIVFSAGIVPALSTS 98 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCCC--CTTHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHHHH
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHHHHHHHHhCCCCCh---hhEEEcCCHHHHHHHH
Confidence 3445666666655 45778888888876644444333 5678889999999999954321 2489999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC--CccccCHHHHHHHhhhCCeEEEEeeC
Q 014163 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE--GYYVMNPVKAVELVDENTICVAAILG 211 (429)
Q Consensus 134 l~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~ 211 (429)
+.++.. .+++|+++.++|.++...++..|++++.+|.++ +++.+|+++|++++++++++|+++++
T Consensus 99 ~~~l~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p 165 (383)
T 3kax_A 99 IQAFTK-------------ENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQGVKLMLLCSP 165 (383)
T ss_dssp HHHHCC-------------TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTTTCCEEEEESS
T ss_pred HHHhCC-------------CCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhCcCCeEEEEeCC
Confidence 888743 136899999999999999999999999999863 23679999999999888999999999
Q ss_pred CCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CC----CCeeEEEEcCcccCC-CC
Q 014163 212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL----PLVKSINVSGHKYGL-VY 282 (429)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~----~~~d~~~~s~hK~~~-~p 282 (429)
+||||.+.| +++|+++|++| |+++|+|++|+++.. .......+ .. ...+.+..+.+|+++ ++
T Consensus 166 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 236 (383)
T 3kax_A 166 HNPIGRVWKKEELTKLGSLCTKY------NVIVVADEIHSDIIY---ADHTHTPFASLSEELAARTITCMAPSKTFNIAG 236 (383)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC---TTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG
T ss_pred CCCCCcCcCHHHHHHHHHHHHHC------CCEEEEEcccccccc---CCCCceeHhhcCccccCcEEEEEEChhhccCcc
Confidence 999999965 66667779999 999999999987432 11111111 11 135577889999876 77
Q ss_pred CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHh
Q 014163 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEGYKNIMENCMGNARALREGLEK 360 (429)
Q Consensus 283 ~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l--~~~g~~~~~~~~~~~~~~l~~~L~~ 360 (429)
.++|++++.+++.. +.+......... ++. ...++.++...+ ..+.+++..++..++++++.+.|++
T Consensus 237 ~r~G~~~~~~~~~~-~~~~~~~~~~~~--------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 304 (383)
T 3kax_A 237 LQASIIIIPNEKLR-QAFTSIQYRQGF--------HGL---NIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKD 304 (383)
T ss_dssp GCCEEEECCCHHHH-HHHHHHHHHTTC--------CCC---CHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheEEEeCCHHHH-HHHHHHHhhccc--------CCC---CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999876443222 221111110000 122 222333333333 3455788889999999999999998
Q ss_pred -CCCeEEeeCCCCceEEE-EEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 361 -TGRFEILSKDVGVPLVA-FSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 361 -~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+|+++++.+ ..+++. +.++.. +.+..++.+.|.+ ++|+.+++.......+..++|++++..
T Consensus 305 ~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~~---~~gi~v~~g~~~~~~~~~~iRi~~~~~ 367 (383)
T 3kax_A 305 HIPTLSVMKP--EGSFLLWIDCSAL-NLSQDERTKLLEE---KGKIIVEPGEKYGLGGEEHIGINIGCP 367 (383)
T ss_dssp HCTTCEECCC--SBSSEEEEECGGG-CCCHHHHHHHHHH---TSCEECEESGGGCTTCTTEEEEECSSC
T ss_pred hCCCceEecC--CceEEEEEEcccc-CCCHHHHHHHHHh---hCCEEeECchhhcCCCCCeEEEEEcCC
Confidence 777888754 344444 555432 3567777777752 579998764222223457799998753
No 50
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.94 E-value=6.5e-26 Score=222.83 Aligned_cols=332 Identities=10% Similarity=0.027 Sum_probs=226.7
Q ss_pred CCCCCcccccccc---CC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 53 DGNPRLNLASFVT---TW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 53 ~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
.++..++|..+.+ .. +++.+.+++...+......|...++..++++++.+++.+.+|++.+. ..+.+|+|+++
T Consensus 36 ~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~v~~t~g~~~ 112 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP---DDVRVTAAVTE 112 (406)
T ss_dssp TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHH
T ss_pred cCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCH---HHEEEcCChHH
Confidence 3445555666666 33 34668888877775544345555577899999999999988875432 24899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEE
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVA 207 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~ 207 (429)
|+.+++.++.. .+++|+++.++|.++..+++..|++++.+|+++ +++.+|+++|++++++++++|+
T Consensus 113 al~~~~~~l~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~ 179 (406)
T 1xi9_A 113 ALQLIFGALLD-------------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIA 179 (406)
T ss_dssp HHHHHHHHHCC-------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHhCC-------------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEE
Confidence 99999988743 136899999999999999999999999999874 3478999999999998899999
Q ss_pred EeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCC-c-cccCCCCe-eEEEEcCcccCC-
Q 014163 208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLPLV-KSINVSGHKYGL- 280 (429)
Q Consensus 208 ~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~-d~~~~s~hK~~~- 280 (429)
+++++||||.+.+ +++|+++|+++ |+++|+|++|+++.. .... . ..+. .+. |.++.+.+|+++
T Consensus 180 i~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~---~~~~~~~~~~~-~~~~~i~~~s~sK~~~~ 249 (406)
T 1xi9_A 180 VINPNNPTGALYDKKTLEEILNIAGEY------EIPVISDEIYDLMTY---EGEHISPGSLT-KDVPVIVMNGLSKVYFA 249 (406)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBS---SSCCCCHHHHC-SSSCEEEEEESTTTTCC
T ss_pred EECCCCCCCCCcCHHHHHHHHHHHHHc------CCEEEEEcCcccccc---CCCCCCHHHcC-CCceEEEEeccccccCC
Confidence 9999999999855 99999999999 999999999987532 1111 0 1112 345 788889999885
Q ss_pred CCCCeEEEEE-eCCC---CcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Q 014163 281 VYAGVGWVVW-RTKD---DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356 (429)
Q Consensus 281 ~p~g~g~l~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~ 356 (429)
++.++|++++ .++. .+.+.+.....+. ++.+.....++.++++. +.+.+++..++..++++++.+
T Consensus 250 ~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~----------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~ 318 (406)
T 1xi9_A 250 TGWRLGYMYFVDPENKLSEVREAIDRLARIR----------LCPNTPAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYK 318 (406)
T ss_dssp GGGCCEEEEEECTTCTTHHHHHHHHHHHHHT----------CCSCSHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEecCchhHHHHHHHHHHHHHhh----------cCCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHH
Confidence 5566899883 2321 2222221111111 11111233334444432 344578888999999999999
Q ss_pred HHHhCCCeEEeeCCCCceEEEE-EecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 357 GLEKTGRFEILSKDVGVPLVAF-SLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
.|++++++++..+ ..++++| .++...+.+..++.+.|.+ ++|+.+.+.......+..++|++++.
T Consensus 319 ~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~gi~v~~g~~f~~~~~~~lRis~~~ 384 (406)
T 1xi9_A 319 RLNEIPGISTTKP--QGAFYIFPKIEVGPWKNDKEFVLDVLH---NAHVLFVHGSGFGEYGAGHFRAVFLP 384 (406)
T ss_dssp HHHTSTTEECCCC--CBSSEECCEECSCSCSSHHHHHHHHHH---HHCEECEEGGGGCGGGTTBEEEECCS
T ss_pred HHHhCCCCeeecC--CeeEEEEEecCccCCCCHHHHHHHHHH---hCCEEEeCchhcCCCCCCEEEEEecC
Confidence 9999977877643 3444444 5532102455666665531 68998865411111234569999863
No 51
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.94 E-value=9.3e-26 Score=226.48 Aligned_cols=345 Identities=13% Similarity=0.038 Sum_probs=227.3
Q ss_pred HHHHHHHHhhccCCCCCccccccccCCChHHHHHHHHHHcCcCCC-------CCccChhhHHHHHHHHHHHHHhhCCCCC
Q 014163 41 AAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYV-------DMDEYPVTTELQNRCVNMIAHLFNTPVA 113 (429)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~ 113 (429)
++++.+.+....+ +..++|..... ++++.+.+++.+.+.+.+. .|...+...++|+.+++++++++|++.+
T Consensus 31 ~~~~~~~~~~~~~-~~~i~L~a~e~-~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~ 108 (483)
T 1rv3_A 31 EVYDIIKKESNRQ-RVGLELIASEN-FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ 108 (483)
T ss_dssp HHHHHHHHHHHHH-HSSEECCTTCC-CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHh-hcCeEEEcCCC-CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcc
Confidence 3455544433222 23344444332 4567788888877754321 1334456789999999999999999752
Q ss_pred CCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH--------HHHhcCceeEEEec--
Q 014163 114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK--------FARYFEVELKEVKL-- 183 (429)
Q Consensus 114 ~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~--------~~~~~G~~v~~v~~-- 183 (429)
.. ...+.+++|+ ++|..++.++.+ .+++|+++++.|.++.. .+...|..++.+++
T Consensus 109 ~~-~~~V~~~sGs-~an~~~~~all~-------------pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~ 173 (483)
T 1rv3_A 109 CW-GVNVQPYSGS-PANFAVYTALVE-------------PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 173 (483)
T ss_dssp TE-EEECCCSSHH-HHHHHHHHHHTC-------------TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred cC-ceEEEECCcH-HHHHHHHHHhcC-------------CCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence 10 0114455555 888877777643 23689999988876542 33455644566665
Q ss_pred cCCccccCHHHHHHHhh-hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc
Q 014163 184 EEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD 262 (429)
Q Consensus 184 ~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~ 262 (429)
+++++.+|+++|+++++ .+|++|++ +++|++ .+.|+++|+++|+++ |+++++|+||+.+.... +.....
T Consensus 174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~------g~~livD~ah~~g~~~~--~~~~~p 243 (483)
T 1rv3_A 174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADEN------GAYLMADMAHISGLVVA--GVVPSP 243 (483)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHT------TCEEEEECTTTHHHHHH--TSSCCG
T ss_pred ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHc------CCEEEEEccchhccccc--CCCCCC
Confidence 64458999999999998 78999888 888887 889999999999999 99999999997544321 111111
Q ss_pred cCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc----cCC-----CCCCCCCceeccCCchhHHHHHHHHHH
Q 014163 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH----INY-----LGSDQPTFTLNFSKGSSQIIAQYYQFI 333 (429)
Q Consensus 263 ~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~tr~~~~~~~~~~al~ 333 (429)
+.++|++++++||++.+|.| |+++++++. . . +... ..| +... ......|+++...+.++.++++
T Consensus 244 --~~~~div~~s~~K~l~Gprg-G~i~~~~~~-~-~-~~~~~g~~~~y~~~~~~~~~-~~~~~~g~~~~~~iaal~~Al~ 316 (483)
T 1rv3_A 244 --FEHCHVVTTTTHKTLRGCRA-GMIFYRRGV-R-S-VDPKTGKEILYNLESLINSA-VFPGLQGGPHNHAIAGVAVALK 316 (483)
T ss_dssp --GGTCSEEEEESSGGGCCCSC-EEEEEECSB-C-C--------CCBCCHHHHHHHH-HTTTTCCSCCHHHHHHHHHHHH
T ss_pred --CCCCcEEEecCcccCCCCCc-eEEEEcchh-h-h-hccccCcchhhHHHHHhhhh-cCCcccCCccHHHHHHHHHHHH
Confidence 12689999999999988877 999987642 1 0 0000 000 0000 0001136666566677777887
Q ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCC
Q 014163 334 RLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPM 412 (429)
Q Consensus 334 ~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~ 412 (429)
.+...+++++.++..++++++.+.|.+. +++++.+.....++.+.+... +.+..++.+.|. +.||.++.. .|.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~-g~~~~~~~~~L~----~~gI~v~~~~~pg 390 (483)
T 1rv3_A 317 QAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSK-GTDGGRAEKVLE----ACSIACNKNTCPG 390 (483)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG-TCCHHHHHHHHH----HTTEECEEECCSS
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCC-CCCHHHHHHHHH----hCCcEEecCCCCC
Confidence 7776788999999999999999999998 599886532234555565432 456777777776 899998732 121
Q ss_pred C--CCCceEEEEEec
Q 014163 413 S--YPWSTKLRVISH 425 (429)
Q Consensus 413 ~--~~~~~~lRi~~~ 425 (429)
. ..+...+|++++
T Consensus 391 ~~~~~~~~~iRis~~ 405 (483)
T 1rv3_A 391 DKSALRPSGLRLGTP 405 (483)
T ss_dssp CSCTTSCCEEEEECH
T ss_pred CCcCCCCceEEeecC
Confidence 1 124568999986
No 52
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=6.7e-26 Score=221.48 Aligned_cols=324 Identities=14% Similarity=0.038 Sum_probs=225.2
Q ss_pred CCCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHH
Q 014163 53 DGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~ 131 (429)
.++..++|..+.+.. +++.+.+++.+.+......|...++..++++++.+++.+.+|++.+. ..+.+|+|+++|+.
T Consensus 39 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~---~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP---DQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG---GGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH---HHEEEecCHHHHHH
Confidence 344555666666653 35678888888876544445555678899999999998888875321 24899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEee
Q 014163 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAIL 210 (429)
Q Consensus 132 ~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~ 210 (429)
+++.++.. .+++|++++++|.++...++..|++++.+|.++ +++.+|+++|++++++++++|++++
T Consensus 116 ~~~~~l~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~ 182 (389)
T 1o4s_A 116 NAFMALLD-------------PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINS 182 (389)
T ss_dssp HHHHHHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEES
T ss_pred HHHHHhCC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcC
Confidence 99988743 136899999999999999999999999999874 2478999999999998899999999
Q ss_pred CCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc-cccC-CCCeeEEEEcCcccCC-CCCC
Q 014163 211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFR-LPLVKSINVSGHKYGL-VYAG 284 (429)
Q Consensus 211 ~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~-~~~~d~~~~s~hK~~~-~p~g 284 (429)
++||||.+.| +++|+++|+++ |+++|+|++|+.+.. ...... ..+. ..+.|+++.+.||+++ ++.+
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 254 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKR------NFYIISDEVYDSLVY--TDEFTSILDVSEGFDRIVYINGFSKSHSMTGWR 254 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBC--SSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCCHhhcCCCCCcEEEEeechhhcCCcccc
Confidence 9999999866 99999999999 999999999987542 111000 1111 1358999999999875 5566
Q ss_pred eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 014163 285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRF 364 (429)
Q Consensus 285 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 364 (429)
+|++++++ + +.+.+........ .+ ...+.+++++..+.. ++++..++..++++++.+.|+++ ++
T Consensus 255 ~G~l~~~~-~-~~~~l~~~~~~~~---------~~---~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~ 318 (389)
T 1o4s_A 255 VGYLISSE-K-VATAVSKIQSHTT---------SC---INTVAQYAALKALEV-DNSYMVQTFKERKNFVVERLKKM-GV 318 (389)
T ss_dssp CEEEECCH-H-HHHHHHHHHHHHT---------CS---CCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred eEEEEeCH-H-HHHHHHHHhhhcc---------cC---CCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 89988743 2 2222111111000 11 122334455555543 27788888999999999999998 47
Q ss_pred EEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 365 EILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 365 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++..+. ...++.+.++ .+..++.+.|.+ ++|+.+.+...... ..++|++++.
T Consensus 319 ~~~~~~-~~~~~~~~~~----~~~~~l~~~l~~---~~gi~v~~g~~f~~--~~~~Ris~~~ 370 (389)
T 1o4s_A 319 KFVEPE-GAFYLFFKVR----GDDVKFCERLLE---EKKVALVPGSAFLK--PGFVRLSFAT 370 (389)
T ss_dssp CCCCCS-BSSEEEEECS----SCHHHHHHHHHH---HHCEECEEGGGGTC--TTEEEEECCS
T ss_pred eeecCC-cceEEEEeCC----CCHHHHHHHHHH---HCCEEEeCchhcCC--CCeEEEEEeC
Confidence 765432 2334444543 345566666531 67998875411111 2379999874
No 53
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.94 E-value=1.1e-25 Score=222.31 Aligned_cols=331 Identities=12% Similarity=0.073 Sum_probs=232.2
Q ss_pred CCCCccccccccCCC-hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
+...++|+.+.+.++ +|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ..+.+|+|+++|+..
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~---~~v~~~~g~~ea~~~ 134 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVK---EDILFIDGVVPAISI 134 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCH---HHEEEcCCHHHHHHH
Confidence 445566666666544 5778888887776544444333 3788999999999999955322 348999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc--CCccccCHHHHHHHhh-hCCeEEEEe
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVD-ENTICVAAI 209 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~l~~~i~-~~~~~v~~~ 209 (429)
++.++.. .+++|+++.++|.++..+++..|.+++.+|++ ++++.+|+++|+++++ +++++|+++
T Consensus 135 a~~~~~~-------------~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~ 201 (421)
T 3l8a_A 135 ALQAFSE-------------KGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC 201 (421)
T ss_dssp HHHHHSC-------------TEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhcC-------------CCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEEC
Confidence 9998743 12589999999999999999999999999985 4446899999999998 689999999
Q ss_pred eCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc--cccC--CCCeeEEEEcCcccCC-C
Q 014163 210 LGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFR--LPLVKSINVSGHKYGL-V 281 (429)
Q Consensus 210 ~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~--~~~~d~~~~s~hK~~~-~ 281 (429)
+++|++|.+ +++++|+++|++| |+++|+|++|+++.. ...... ..+. ....+.+..+.+|+++ +
T Consensus 202 ~p~nptG~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 273 (421)
T 3l8a_A 202 SPHNPGGRVWDNDDLIKIAELCKKH------GVILVSDEIHQDLAL--FGNTHHSLNTLDASYKDFTIILSSATKTFNIA 273 (421)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSCTTGGGTEEEEECSHHHHTCG
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCccHHHcCchhcCcEEEEEeChhhccCc
Confidence 999999998 7899999999999 999999999987532 110000 0111 1245677888999875 6
Q ss_pred CCCeEEEEEeCCCCccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 014163 282 YAGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (429)
Q Consensus 282 p~g~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~ 360 (429)
+.++|++++++++.. +.+.... .+.. ++.+.....++.++++. +.+.+++..++..++++++.+.|++
T Consensus 274 G~~~G~~~~~~~~l~-~~~~~~~~~~~~---------~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (421)
T 3l8a_A 274 GTKNSFAIIQNESLR-RKFQYRQLANNQ---------HEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEA 342 (421)
T ss_dssp GGCCEEEECCSHHHH-HHHHHHHHHTTC---------SCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheEeEEcCCHHHH-HHHHHHHHhccc---------CCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899887643322 2221111 1110 12222344445555543 5566788889999999999999998
Q ss_pred CCCeEEeeCCCCceEEE-EEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 361 TGRFEILSKDVGVPLVA-FSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 361 ~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+++++++.+ ..+.+. +.+... +.+..++.+.|.+ ++|+.+.+.......+..++|++++..
T Consensus 343 ~~~i~~~~~--~~~~~~~v~~~~~-~~~~~~l~~~l~~---~~gi~v~~g~~f~~~~~~~iRi~~~~~ 404 (421)
T 3l8a_A 343 KTKIKVMEP--EGTYLVWLDFSAY-AIAQPQLSEKLQN---EAKVVLNDGAHFGKEGKYFARLNVATP 404 (421)
T ss_dssp HCSCEEECC--SBSSEEEEECGGG-TCCTTHHHHHHHH---TTCEECEEGGGGCGGGTTEEEEECCSC
T ss_pred CCCceEeCC--CeeEEEEEecccc-CCCHHHHHHHHHH---hCCEEEECchhhCCCCCCEEEEEecCC
Confidence 877888754 344444 665431 3456677777751 459998764211223457799998753
No 54
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=222.05 Aligned_cols=316 Identities=12% Similarity=-0.015 Sum_probs=220.9
Q ss_pred CCChHHHHHHHHHHcCc---CCCC----CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE-eCCchHHHHHHHHHH
Q 014163 66 TWMEPECDKLVMASINK---NYVD----MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAF 137 (429)
Q Consensus 66 ~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~t~a~~~al~a~ 137 (429)
.+.++.+.+++...+.. |+.+ ...++.+.++.+++++.+++++|++.+ ..++| |.|+|+++.+++..+
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~a~~~l 97 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN----YKVIFLQGGGCGQFSAVPLNL 97 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----CeEEEEcCchHHHHHHHHHhc
Confidence 34567788888887753 2211 122456777888999999999999742 23778 479999999998876
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcc
Q 014163 138 KRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT 215 (429)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t 215 (429)
... . .++++++...+|++ +.+.++..|+.++.++++++ +..+++.++.+++++|++|.+++.+|.+
T Consensus 98 ~~~------~-----~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~i~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 98 IGL------K-----AGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWNLNPDASYVYYCANETVH 165 (377)
T ss_dssp GGG------S-----TTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCCCCTTCSCEEEESEETTT
T ss_pred cCC------C-----CCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC-cCCCCChHHhccCCCccEEEEeCccCch
Confidence 531 0 12577777777765 45566778988888887654 5677888888888999999999999999
Q ss_pred ccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCC
Q 014163 216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (429)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~ 295 (429)
|.+.|+ +|+++ ++++|||++++.+..+ .|+. ..+.+++++|||+ +|.|+|+++++++.
T Consensus 166 G~~~pi-----i~~~~------~~~~~vD~~q~~g~~~-------id~~--~~~~~~~s~~K~~-gp~G~g~l~~~~~~- 223 (377)
T 3e77_A 166 GVEFDF-----IPDVK------GAVLVCDMSSNFLSKP-------VDVS--KFGVIFAGAQKNV-GSAGVTVVIVRDDL- 223 (377)
T ss_dssp TEECSS-----CCCCT------TCCEEEECTTTTTSSC-------CCGG--GCSEEEEEGGGTT-SCTTCEEEEEETTS-
T ss_pred heEchh-----hhccC------CCEEEEEcccccCCCC-------Cchh--hcCEEEEeccccc-CCCccEEEEEcHHH-
Confidence 999998 47788 9999999999865543 2332 2345889999999 69999999998653
Q ss_pred cccccccccCCCCC--CCCCceeccCCchhHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC--
Q 014163 296 LPDELVFHINYLGS--DQPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRFEILSKD-- 370 (429)
Q Consensus 296 ~~~~~~~~~~~~~~--~~~~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-- 370 (429)
+...-...+.|+.. ........+|++...++++.++++.+..+ |++++.++..++++++++.|++++++.+...+
T Consensus 224 l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~ 303 (377)
T 3e77_A 224 LGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQ 303 (377)
T ss_dssp CSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGG
T ss_pred HhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHH
Confidence 21111111222210 00111123788888889999999998888 89999999999999999999999888864322
Q ss_pred CCc-eEEEEEecCCCCCCH-HHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 371 VGV-PLVAFSLKDSSAHTV-FEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 371 ~~~-~~v~f~~~~~~~~~~-~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
.+. .+++|++++ ++. .++...+.+.+.++|+.++.... .. ..+|+|++.
T Consensus 304 ~rs~~ivsf~~~~---~~~~~~~~~~~l~~l~~~Gi~~~~g~~--~~--g~iRiS~~~ 354 (377)
T 3e77_A 304 NRSKMNIPFRIGN---AKGDDALEKRFLDKALELNMLSLKGHR--SV--GGIRASLYN 354 (377)
T ss_dssp GBCSSEEEEEESS---TTCCHHHHHHHHHHHHHTTEESCBCCT--TT--CSEEEECCT
T ss_pred HcCCcEEEEEcCC---CCCchhHHHHHHHHHHHCCcEEeCCCC--cC--CEEEEECCC
Confidence 133 479999864 222 23323344444489999765321 12 239999865
No 55
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.94 E-value=3.7e-25 Score=218.97 Aligned_cols=334 Identities=14% Similarity=0.088 Sum_probs=227.0
Q ss_pred CCCccccccccC-----CChHHHHHHHHHHcCcCC-CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 55 NPRLNLASFVTT-----WMEPECDKLVMASINKNY-VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 55 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
.+.++|+.+.+. ++++.+.+++.+.+.... ..|....+..++++.+.+++.+. |.+.+. ..+.+|+|+++
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~---~~v~~t~g~t~ 129 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEA---KDVILTSGCSQ 129 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCG---GGEEEESSHHH
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCCh---HHEEEecCcHH
Confidence 345778888765 456778888887776532 34555567777776654444332 322211 24899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEE
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVA 207 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~ 207 (429)
|+.+++.++.+ .++.|+++.++|..+...++..|++++.+|.++ +++.+|+++|++++++++++|+
T Consensus 130 al~~~~~~l~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~ 196 (427)
T 3dyd_A 130 AIDLCLAVLAN-------------PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLI 196 (427)
T ss_dssp HHHHHHHHHCC-------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEE
T ss_pred HHHHHHHHhcC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEE
Confidence 99999988754 236899999999999999999999999999863 3478999999999998999999
Q ss_pred EeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCC-c-cccCCCCeeEEEEcCccc-CCC
Q 014163 208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLPLVKSINVSGHKY-GLV 281 (429)
Q Consensus 208 ~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~d~~~~s~hK~-~~~ 281 (429)
+++++||||.+.+ +++|+++|+++ |+++++|++|+++.. ..... . ..+.......+..+.+|. +++
T Consensus 197 i~~p~nptG~~~~~~~l~~i~~~~~~~------~~~~i~Deay~~~~~--~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~ 268 (427)
T 3dyd_A 197 VNNPSNPCGSVFSKRHLQKILAVAARQ------CVPILADEIYGDMVF--SDCKYEPLATLSTDVPILSCGGLAKRWLVP 268 (427)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTTTCBC--SSCCCCCGGGGCSSCCEEEEEESTTTSSCG
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcCchhhcc--CCCcCccHHHhCCCCcEEEEeeccccCCCc
Confidence 9999999999988 99999999999 999999999987542 11111 1 111111123556688995 677
Q ss_pred CCCeEEEEEeCCCCcc-cccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q 014163 282 YAGVGWVVWRTKDDLP-DELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (429)
Q Consensus 282 p~g~g~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~ 359 (429)
+.++|+++++++.... ..+... ..+... ..+.+.....++..+++....+.++++.++..++++++.+.|+
T Consensus 269 G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~ 341 (427)
T 3dyd_A 269 GWRLGWILIHDRRDIFGNEIRDGLVKLSQR-------ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALA 341 (427)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHHH-------HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEecCcchhhHHHHHHHHHHHHhc-------cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999987642110 000000 000000 0122233444455555555677788999999999999999999
Q ss_pred hCCCeEEeeCCCCceEEEEEecC---CCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 360 KTGRFEILSKDVGVPLVAFSLKD---SSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++++++++.+. ...++.+.+.. +...+..++.+.|.+ ++|+.+.+... +....++|++++.
T Consensus 342 ~~~g~~~~~p~-~g~~~~~~l~~~~~~~~~~~~~~~~~l~~---~~gV~v~~g~~--~~~~~~iRis~~~ 405 (427)
T 3dyd_A 342 AIPGLRPVRPS-GAMYLMVGIEMEHFPEFENDVEFTERLVA---EQSVHCLPATC--FEYPNFIRVVITV 405 (427)
T ss_dssp HSTTEEEECCS-BTTEEEEEECGGGCTTCSSHHHHHHHHHH---HHCEECEEGGG--GTCTTEEEEESCS
T ss_pred cCCCceecCCC-eeEEEEEecCHhhcCCCCCHHHHHHHHHH---HCCEEEECCcc--cCCCCeEEEEECC
Confidence 99888876543 44455556541 112456677766632 78998875411 1234579999864
No 56
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.94 E-value=8.5e-26 Score=220.54 Aligned_cols=328 Identities=12% Similarity=0.038 Sum_probs=223.6
Q ss_pred CccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCC-ceEeCCchHHHHHHH
Q 014163 57 RLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV-GVGTVGSSEAIMLAG 134 (429)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~-~~~t~g~t~a~~~al 134 (429)
.++|..+.+.. +++.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+. .. +.+|+|+++|+.+++
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~~v~~~~g~~~a~~~~~ 104 (389)
T 1gd9_A 28 VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADP---KTEIMVLLGANQAFLMGL 104 (389)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCT---TTSEEEESSTTHHHHHHH
T ss_pred eEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC---CCeEEEcCChHHHHHHHH
Confidence 34556666653 45678888887776544445555578899999999999888964321 24 889999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEeeCCC
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST 213 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~ 213 (429)
.++.. .+++|++++++|+++..+++..|++++.+|+++ +++.+|+++|++++++++++|++++++|
T Consensus 105 ~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~n 171 (389)
T 1gd9_A 105 SAFLK-------------DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCN 171 (389)
T ss_dssp TTTCC-------------TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCT
T ss_pred HHhCC-------------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCC
Confidence 87643 136899999999999999999999999999874 2368999999999998899999999999
Q ss_pred cccccc---ChHHHHHHHHHhhhccCCCccEEeecccccccccccCC-CCc-ccc-CCCCeeEEEEcCcccCC-CCCCeE
Q 014163 214 LTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-DLE-WDF-RLPLVKSINVSGHKYGL-VYAGVG 286 (429)
Q Consensus 214 ~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~-~~~-~~~-~~~~~d~~~~s~hK~~~-~p~g~g 286 (429)
|||.+. ++++|+++|++| |+++|+|++|+++.. ... ... ..+ +..+.|++..+.||+++ ++.++|
T Consensus 172 ptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 172 PTGAVLTKKDLEEIADFVVEH------DLIVISDEVYEHFIY--DDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--TTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred CCCcCCCHHHHHHHHHHHHHc------CCEEEEehhhhhccc--CCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 999986 599999999999 999999999987542 111 001 111 12357999999999875 556789
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHhCCCe
Q 014163 287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE--GYKNIMENCMGNARALREGLEKTGRF 364 (429)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~--g~~~~~~~~~~~~~~l~~~L~~~~~~ 364 (429)
++++++ + +.+.+........ ++.+.....++..+++. +.. .+++..++..++++++.+.|+++ ++
T Consensus 244 ~~~~~~-~-~~~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 310 (389)
T 1gd9_A 244 FVAAPS-W-IIERMVKFQMYNA---------TCPVTFIQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GL 310 (389)
T ss_dssp EEECCH-H-HHHHHHHHHTTTT---------CSCCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EEEECH-H-HHHHHHHHHhhhc---------cCCCHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 988753 2 2222211111110 12222222223333322 133 57888888999999999999998 47
Q ss_pred EEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 365 EILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 365 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++..+. ...++.+.++.. +.+..++.+.|.+ ++|+.+.+.......+..++|++++.
T Consensus 311 ~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~---~~gi~v~~g~~~~~~~~~~iRi~~~~ 367 (389)
T 1gd9_A 311 PTVKPK-GAFYIFPRIRDT-GLTSKKFSELMLK---EARVAVVPGSAFGKAGEGYVRISYAT 367 (389)
T ss_dssp CCCCCC-BTTEECCBCGGG-TCCHHHHHHHHHH---HTCEECEEGGGGCGGGTTBEEEECCS
T ss_pred eecCCC-eeeEEEEeccCC-CCCHHHHHHHHHH---hCCEEEeCchhhCCCCCCeEEEEecC
Confidence 765432 233444455321 2455666666531 68998876421111234569999875
No 57
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1.4e-25 Score=220.69 Aligned_cols=330 Identities=13% Similarity=0.068 Sum_probs=227.5
Q ss_pred CccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 57 RLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
.++|..+.+.. ++|.+.+++.+.++.....|....+..++++++.+++.+.+|.+.+.+ ..+.+|+|+++|+.+++.
T Consensus 27 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~--~~v~~t~g~~~al~~~~~ 104 (411)
T 2o0r_A 27 AVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPE--TEVLVTVGATEAIAAAVL 104 (411)
T ss_dssp CEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT--TSEEEEEHHHHHHHHHHH
T ss_pred eeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ceEEEeCCHHHHHHHHHH
Confidence 34555555553 456788888887765333455556678999999999999889753221 138999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC--ccccCHHHHHHHhhhCCeEEEEeeCCC
Q 014163 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDENTICVAAILGST 213 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~ 213 (429)
++.. .+++|+++.++|.++..+++..|++++.+|++++ ++.+|+++|++++++++++|++++++|
T Consensus 105 ~~~~-------------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~n 171 (411)
T 2o0r_A 105 GLVE-------------PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHN 171 (411)
T ss_dssp HHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCT
T ss_pred HhcC-------------CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCC
Confidence 8743 1368999999999999999999999999998643 478999999999998899999999999
Q ss_pred ccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCC-Cc-cccC-CCCeeEEEEcCcccCC-CCCCeE
Q 014163 214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LE-WDFR-LPLVKSINVSGHKYGL-VYAGVG 286 (429)
Q Consensus 214 ~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~-~~~~-~~~~d~~~~s~hK~~~-~p~g~g 286 (429)
|+|.+.| +++|+++|+++ |+++|+|++|+++.. .... .. ..+. ..+.|+++.+.+|+++ ++.++|
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (411)
T 2o0r_A 172 PTGAVLSATELAAIAEIAVAA------NLVVITDEVYEHLVF--DHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIG 243 (411)
T ss_dssp TTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--TTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccccccc--CCCCCcChhhccCCCCCEEEEeechhhcCCccceEE
Confidence 9999855 59999999999 999999999987542 1111 01 1111 1357999999999875 455699
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014163 287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (429)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 366 (429)
++++++ + +.+.+.....+.. ++.+.....++..+++. +.+.+++..++..++++++.+.|++. ++++
T Consensus 244 ~~~~~~-~-~~~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 310 (411)
T 2o0r_A 244 WACGPA-E-LIAGVRAAKQYLS---------YVGGAPFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAV 310 (411)
T ss_dssp EEECCH-H-HHHHHHHHHHHHT---------SCCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEE
T ss_pred EEeeCH-H-HHHHHHHHHhhcc---------CCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence 988742 2 2222211111111 11111233344445543 35667888899999999999999988 4887
Q ss_pred eeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc--CCCCC---------CCceEEEEEecc
Q 014163 367 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK--LPMSY---------PWSTKLRVISHL 426 (429)
Q Consensus 367 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~---------~~~~~lRi~~~~ 426 (429)
..+. ...++.+.++.....+..++.+.|.+ ++|+.+.+. +.... .+..++|++++.
T Consensus 311 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~---~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~ 377 (411)
T 2o0r_A 311 HDSY-GTYFLCADPRPLGYDDSTEFCAALPE---KVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK 377 (411)
T ss_dssp CCCC-BSSEEEEECGGGTCCCHHHHHHHHHH---HHSEECEEGGGGSCCC--------CCGGGCEEEECCS
T ss_pred cCCC-eeEEEEEecCCCCCCCHHHHHHHHHH---hCCEEEcChhhhCCCccccccccccCCCCeEEEEecC
Confidence 6432 33466677653111456667666541 579988654 11111 035679999864
No 58
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.94 E-value=9.9e-26 Score=220.75 Aligned_cols=326 Identities=13% Similarity=0.054 Sum_probs=222.6
Q ss_pred CCccccccccCC-ChHHHHHHHHHHcCcC----CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHH
Q 014163 56 PRLNLASFVTTW-MEPECDKLVMASINKN----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~ 130 (429)
..++|..+.+.. ++|.+.+++.+.+... ...|....+..++++++.+++.+.+|.+.+. ..+.+|+|+++|+
T Consensus 36 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~i~~~~g~~~al 112 (398)
T 3ele_A 36 NVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNA---DNLYMTMGAAASL 112 (398)
T ss_dssp GCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GGEEEESSHHHHH
T ss_pred CeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCCh---HHEEEccCHHHHH
Confidence 445667666664 4567888888777653 2345555677899999999999999965432 3489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC-cEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEe
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAI 209 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~-~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 209 (429)
..++.++.. .+ +.|+++.++|..+...++..|++++.+|++++++.+|+++|++++++++++|+++
T Consensus 113 ~~~~~~l~~-------------~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 179 (398)
T 3ele_A 113 SICFRALTS-------------DAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAHTRGVIIN 179 (398)
T ss_dssp HHHHHHHCC-------------STTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEEC
T ss_pred HHHHHHHcC-------------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEc
Confidence 999988754 23 6899999999999999999999999999986557899999999999999999999
Q ss_pred eCCCccccccC---hHHHHHHHHH------hhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC
Q 014163 210 LGSTLTGEFED---VKLLHDLLTK------KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL 280 (429)
Q Consensus 210 ~~~~~tG~~~~---l~~I~~la~~------~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~ 280 (429)
+++||||.+.+ +++|+++|++ | ++++|+|++|+.+.. ..............+.+..+.+|+++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~ 251 (398)
T 3ele_A 180 SPNNPSGTVYSEETIKKLSDLLEKKSKEIGR------PIFIIADEPYREIVY--DGIKVPFVTKYYDNTLVCYSYSKSLS 251 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS------CCEEEEECTTTTCBC--TTCCCCCGGGTCSSEEEEEESTTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhccCC------CeEEEEecccccccc--CCCCcCChHhhcCCeEEEEehhhcCC
Confidence 99999999977 7777789998 8 999999999987432 11111112223346788889999886
Q ss_pred -CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q 014163 281 -VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (429)
Q Consensus 281 -~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~ 359 (429)
++.++|++++++. .. ........+..... ..++.. ...+.+.++...+.... ..++..++++++.+.|+
T Consensus 252 ~~G~r~G~~~~~~~-~~-~~~~~~~~~~~~~~----~~~~~~-~~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~L~ 321 (398)
T 3ele_A 252 LPGERIGYVLVPDE-VY-DKAELYAAVCGAGR----ALGYVC-APSLFQKMIVKCQGATG---DINAYKENRDLLYEGLT 321 (398)
T ss_dssp CTTTCCEEEECCTT-ST-THHHHHHHHHHHHH----HTTCCC-SCHHHHHHHTTCTTCCC---CHHHHHHHHHHHHHHHH
T ss_pred CccceeEEEEEcch-hh-hHHHHHHHHHHHhh----hccccC-CCHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHH
Confidence 7788999887543 21 10000000000000 000110 12233444443333221 35667788899999998
Q ss_pred hCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 360 KTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
+++ +++..+. ....+.+.++. .+..++.+.|. ++|+.+++.... ....++|++++.
T Consensus 322 ~~g-~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~----~~gi~v~~g~~~--~~~~~iRis~~~ 377 (398)
T 3ele_A 322 RIG-YHCFKPD-GAFYMFVKALE---DDSNAFCEKAK----EEDVLIVAADGF--GCPGWVRISYCV 377 (398)
T ss_dssp HHT-CCEECCS-BSSEEEEECSS---SCHHHHHHHHH----TTTEECEESGGG--TCTTEEEEECCS
T ss_pred HcC-CeecCCC-eeEEEEEEcCC---CCHHHHHHHHH----HCCEEEeCcccc--CCCCeEEEEecC
Confidence 874 7766443 33335555532 35667777776 999998764211 123579999864
No 59
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.94 E-value=3.3e-25 Score=218.21 Aligned_cols=331 Identities=11% Similarity=0.026 Sum_probs=223.3
Q ss_pred CCCCCccccccccCC-ChHHHHHHHHHHcCcC-CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHH
Q 014163 53 DGNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~ 130 (429)
.+...++|..+.+.. ++|.+.+++...+... ...|...++..++++.+.+++.+.+|.+.+.. ..+.+|+|+++|+
T Consensus 35 ~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~--~~v~~t~g~~~a~ 112 (412)
T 2x5d_A 35 RGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPE--SEAIVTIGSKEGL 112 (412)
T ss_dssp TTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTT--TSEEEESCHHHHH
T ss_pred cCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCC--cCEEEcCChHHHH
Confidence 455566677776654 4577888888877653 23354456788999998888888889743210 1389999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC-ccccCHHHHHHHhhhCCeEEEEe
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAI 209 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~ 209 (429)
.+++.++.. .++.|+++.++|.++...++..|++++.+|.+++ ++.+|+++|++++++++++|+++
T Consensus 113 ~~~~~~~~~-------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~ 179 (412)
T 2x5d_A 113 AHLMLATLD-------------HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILG 179 (412)
T ss_dssp HHHHHHHCC-------------TTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEE
T ss_pred HHHHHHhCC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccCceEEEEC
Confidence 999888743 1368999999999999999999999999998754 46789999999999889999999
Q ss_pred eCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCC-c-cccC-CCCeeEEEEcCcccCC-CC
Q 014163 210 LGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFR-LPLVKSINVSGHKYGL-VY 282 (429)
Q Consensus 210 ~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~-~~~~d~~~~s~hK~~~-~p 282 (429)
+++||||.+.+ +++|+++|++| |+++|+|++|+.+.. ..... . ..+. ..+.+.+..+.+|+++ ++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQY------DVMVVHDLAYADIVY--DGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEecccccccc--CCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 99999999865 68899999999 999999999987542 11111 0 1111 1357888999999886 66
Q ss_pred CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014163 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG 362 (429)
Q Consensus 283 ~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~ 362 (429)
.++|++++++ +. .+.+.....+.. ++.+.....++..+++. +.+.+++..++..++++++.+.|+++
T Consensus 252 ~r~G~~~~~~-~~-~~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~- 318 (412)
T 2x5d_A 252 WRIGFMVGNP-EL-VSALARIKSYHD---------YGTFTPLQVAAIAALEG-DQQCVRDIARQYQQRRDVLVKGLREA- 318 (412)
T ss_dssp SCCEEEEECH-HH-HHHHHHHHHHHC---------CCCCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cceEEEEcCH-HH-HHHHHHHHhhhc---------cCCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 7889998743 22 222211111100 12222223333333432 24557888889999999999999988
Q ss_pred CeEEeeCCCCce-EEEEEecCCCCC---CHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 363 RFEILSKDVGVP-LVAFSLKDSSAH---TVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 363 ~~~~~~~~~~~~-~v~f~~~~~~~~---~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++++..+ ..+ ++.+.++. +. +..++.+.|.+ ++|+.+.+.......+..++|++++.
T Consensus 319 g~~~~~~--~~g~~~~~~~~~--~~~~~~~~~~~~~l~~---~~gi~v~~g~~f~~~~~~~iRis~~~ 379 (412)
T 2x5d_A 319 GWMVENP--KASMYVWAKIPE--PYAHLGSLEFAKKLLQ---DAKVSVSPGIGFGDYGDDHVRFALIE 379 (412)
T ss_dssp TCCCCCC--SBSSEEEEECCT--TTGGGCHHHHHHHHHH---HHCEECEEGGGGCGGGTTEEEEECCS
T ss_pred CCEecCC--CeeeEEEEEcCC--ccCCCCHHHHHHHHHH---HCCEEEeCchhhCCCCCCeEEEEecC
Confidence 4766533 344 45566632 33 56677777751 46999876521111234679999875
No 60
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.94 E-value=3.3e-25 Score=215.39 Aligned_cols=329 Identities=11% Similarity=-0.040 Sum_probs=224.2
Q ss_pred CCCCCccccccccCC-ChHHHHHHHHHHcCcC-CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHH
Q 014163 53 DGNPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~ 130 (429)
.+...++|..+.+.. ++|.+.+++.+.+... ...|...++..++++++.+++.+.+|.+.+.. ..+.+|+|+++|+
T Consensus 23 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~--~~v~~~~g~~~a~ 100 (376)
T 2dou_A 23 RGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPR--REALALIGSQEGL 100 (376)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTT--TSEEEESSHHHHH
T ss_pred cCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccEEEcCCcHHHH
Confidence 455556667776654 4577888888887643 23343334778888888888888889863211 1389999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEee
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL 210 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~ 210 (429)
.+++.++.+ .+++|+++.++|.++...++..|++++.+|+ ++++.+|+++|++++++++++|++++
T Consensus 101 ~~~~~~l~~-------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~v~l~~ 166 (376)
T 2dou_A 101 AHLLLALTE-------------PEDLLLLPEVAYPSYFGAARVASLRTFLIPL-REDGLADLKAVPEGVWREAKVLLLNY 166 (376)
T ss_dssp HHHHHHHCC-------------TTCEEEEESSCCHHHHHHHHHTTCEEEEECB-CTTSSBCGGGSCHHHHHHEEEEEECS
T ss_pred HHHHHHhcC-------------CCCEEEECCCCcHhHHHHHHHcCCEEEEeeC-CCCCCCCHHHHHHhhccCceEEEECC
Confidence 999888743 1368999999999999999999999999998 44467999999999988899999999
Q ss_pred CCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc-ccc-CCCCeeEEEEcCcccCC-CCCC
Q 014163 211 GSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-RLPLVKSINVSGHKYGL-VYAG 284 (429)
Q Consensus 211 ~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~d~~~~s~hK~~~-~p~g 284 (429)
++||||.+.| +++|+++|++| |+++|+|++|+.+.. ...... ..+ +..+.+.+..+.+|+++ ++.+
T Consensus 167 p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (376)
T 2dou_A 167 PNNPTGAVADWGYFEEALGLARKH------GLWLIHDNPYVDQVY--EGEAPSPLALPGAKERVVELFSLSKSYNLAGFR 238 (376)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBS--SSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGC
T ss_pred CCCCcCccCCHHHHHHHHHHHHHc------CCEEEEEccchhccc--CCCCCChhhcCCCCCcEEEEecchhhcCChhhe
Confidence 9999999865 78899999999 999999999987542 110000 111 11235677888999875 6678
Q ss_pred eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 014163 285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRF 364 (429)
Q Consensus 285 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 364 (429)
+|+++.++ + +.+.+........ .+.+.....++..+++. +.+.+++..++..++++++.+.|+++ +
T Consensus 239 ~G~~~~~~-~-~~~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~ 304 (376)
T 2dou_A 239 LGFALGSE-E-ALARLERVKGVID---------FNQYAGVLRMGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--L 304 (376)
T ss_dssp CEEEEECH-H-HHHHHHHHHHHHC---------CCSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--S
T ss_pred eEEEecCH-H-HHHHHHHHHHhcc---------cCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 89987643 2 2222211111000 11122222223333322 25667888888999999999999987 6
Q ss_pred EEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 365 EILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 365 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++..+. ...++.++++. +.+..++.+.|. ++|+.+.+.......+..++|++++.
T Consensus 305 ~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~----~~gi~v~~g~~f~~~~~~~~Ris~~~ 359 (376)
T 2dou_A 305 SLLPPR-ATMYLWGRLPE--GVDDLEFGLRLV----ERGVALAPGRGFGPGGKGFVRIALVR 359 (376)
T ss_dssp EECCCC-BSSEEEEECCT--TCCHHHHHHHHH----HTTEECEEGGGGCGGGTTEEEEECCS
T ss_pred CccCCC-eeEEEEEECCC--CCCHHHHHHHHH----HCCEEEcCchhhCCCCCCeEEEEecC
Confidence 665332 33345566642 456667777777 88999876411111234679999864
No 61
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=1.1e-25 Score=219.09 Aligned_cols=319 Identities=13% Similarity=0.027 Sum_probs=213.1
Q ss_pred CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
.+++.+.+++...... + .++.......+++++++++++..... +...+++|+|+|+|+.+++.++...+
T Consensus 15 ~~~~~v~~a~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~g~t~al~~~~~~~~~~~----- 83 (385)
T 2bkw_A 15 ILSGAVQKALDVPSLG----H-TSPEFVSIFQRVLKNTRAVFKSAAAS-KSQPFVLAGSGTLGWDIFASNFILSK----- 83 (385)
T ss_dssp CCCHHHHHTTSCCCCC----T-TSHHHHHHHHHHHHHHHHHTTCCGGG-TCEEEEEESCTTHHHHHHHHHHSCTT-----
T ss_pred CchHHHHHHHhccccc----c-CCHHHHHHHHHHHHHHHHHhCCCCCC-CCceEEEcCchHHHHHHHHHHHhccC-----
Confidence 3456666665443322 1 24444445556777788887764210 00248899999999999998874100
Q ss_pred hcCCCCCCcEEEEcCC-C-chHHHHHHHhcCceeEEEec-cCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccChH
Q 014163 147 EQGKPYDKPNIVTGAN-V-QVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVK 222 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~-~-h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~ 222 (429)
..+++|++++. . |.++..+++..|++++.+|+ +++ +.+|+++|++++++ ++++|++++++|+||.+.|++
T Consensus 84 -----~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~ 157 (385)
T 2bkw_A 84 -----APNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIG-ESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLK 157 (385)
T ss_dssp -----CSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTT-SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred -----CCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCC-CCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHH
Confidence 01257766644 3 33445677889999999998 664 78999999999988 899999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccc
Q 014163 223 LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302 (429)
Q Consensus 223 ~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~ 302 (429)
+|+++|+++++ |+++|+|++|+.+..+ .++...++|++++++||++++|.|+|+++++++ .+.+.+..
T Consensus 158 ~i~~~~~~~~~----~~~li~D~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~-~~~~~l~~ 225 (385)
T 2bkw_A 158 AISQAIKQTSP----ETFFVVDAVCSIGCEE-------FEFDEWGVDFALTASQKAIGAPAGLSISLCSSR-FMDYALND 225 (385)
T ss_dssp HHHHHHHHHCT----TSEEEEECTTTTTTSC-------CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHH-HHHHHTCH
T ss_pred HHHHHHHhhCC----CCEEEEECccccCCcc-------ccccccCceEEEecCccccccCCcceEEEEcHH-HHHHHHhh
Confidence 99999999822 6999999999754321 122223589999999999988999999988653 22101110
Q ss_pred -----ccCCCCCC-----------CCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH-HhCCCeE
Q 014163 303 -----HINYLGSD-----------QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL-EKTGRFE 365 (429)
Q Consensus 303 -----~~~~~~~~-----------~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L-~~~~~~~ 365 (429)
...|.... .......++.+.....++.++++.+...+++++.++..++++++.+.| +++ +++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~ 304 (385)
T 2bkw_A 226 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLT 304 (385)
T ss_dssp HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCE
T ss_pred ccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-Cce
Confidence 00111000 000000135555555666677776655678889999999999999999 888 588
Q ss_pred EeeCC----CCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEE-ec
Q 014163 366 ILSKD----VGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVI-SH 425 (429)
Q Consensus 366 ~~~~~----~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~-~~ 425 (429)
++.+. ...++++|.+++ ..++.+.|. ++|+.+...... .....++|++ ++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~----~~gi~v~~g~~~-~~~~~~iRis~~~ 359 (385)
T 2bkw_A 305 SVSRYPSNMSAHGLTAVYVAD-----PPDVIAFLK----SHGVVIAGGIHK-DIGPKYIRIGHMG 359 (385)
T ss_dssp ESSCSSSTTBCSSCEEEECSC-----HHHHHHHHH----HTTEECBCCCCT-TTGGGEEEECCCG
T ss_pred ecccCcccccCCceEEEecCC-----HHHHHHHHH----HCCeEEeCCCCc-ccCCCEEEEEccc
Confidence 77532 135678887632 456666666 899998754221 1245679999 54
No 62
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.94 E-value=7.2e-25 Score=215.94 Aligned_cols=331 Identities=11% Similarity=-0.003 Sum_probs=224.6
Q ss_pred Ccccccccc-----CCChHHHHHHHHHHcCcC-CCCCccChhhHHHHHHHHHHHHHh------hCCCCCCCCCCCceEeC
Q 014163 57 RLNLASFVT-----TWMEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHL------FNTPVADDKTAVGVGTV 124 (429)
Q Consensus 57 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l------~g~~~~~~~~~~~~~t~ 124 (429)
.++|..+.| .++++.+.+++.+.+... ...|....+..++++.+.+++.+. .|.+.+. ..+.+|+
T Consensus 35 ~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~---~~v~~~~ 111 (416)
T 1bw0_A 35 IIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK---DNVVLCS 111 (416)
T ss_dssp CEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG---GGEEEES
T ss_pred eEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCc---ceEEEeC
Confidence 455666654 234577888888777543 233444457788888888888742 2332211 2489999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC-ccccCHHHHHHHhhhCC
Q 014163 125 GSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENT 203 (429)
Q Consensus 125 g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~l~~~i~~~~ 203 (429)
|+++|+.+++.++.. .+++|+++.++|.++..+++..|++++.+|++++ ++.+|+++|++++++++
T Consensus 112 g~~~al~~~~~~l~~-------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 178 (416)
T 1bw0_A 112 GGSHGILMAITAICD-------------AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT 178 (416)
T ss_dssp HHHHHHHHHHHHHCC-------------TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTE
T ss_pred ChHHHHHHHHHHhCC-------------CCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCC
Confidence 999999999888743 1368999999999999999999999999998643 36799999999999889
Q ss_pred eEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCC----Ccccc---CCCCeeEEEE
Q 014163 204 ICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD----LEWDF---RLPLVKSINV 273 (429)
Q Consensus 204 ~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~----~~~~~---~~~~~d~~~~ 273 (429)
++|++++++||||.+.| +++|+++|++| |+++|+|++|+.+.. ... ....+ ....-+.+..
T Consensus 179 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~~~~~~i~~~ 249 (416)
T 1bw0_A 179 KLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL------RLPLFSDEIYAGMVF---KGKDPNATFTSVADFETTVPRVILG 249 (416)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBC---CSSCTTCCCCCTTSSCCSCCEEEEE
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CCEEEEEcccccccc---CCCCCCCCccCHHHccCCCcEEEEe
Confidence 99999999999999988 99999999999 999999999987431 111 01111 1112246667
Q ss_pred cCcccC-CCCCCeEEEEEeCC-CCcccccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHH
Q 014163 274 SGHKYG-LVYAGVGWVVWRTK-DDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN 350 (429)
Q Consensus 274 s~hK~~-~~p~g~g~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~ 350 (429)
+.+|++ +++.++|+++++++ +.. +.+... ..+.. ..++.+.....++..+++....+.+++..++..++
T Consensus 250 s~sK~~~~~Glr~G~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 321 (416)
T 1bw0_A 250 GTAKNLVVPGWRLGWLLYVDPHGNG-PSFLEGLKRVGM-------LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEES 321 (416)
T ss_dssp ESTTTTSCGGGCCEEEEEECTTCSC-HHHHHHHHHHHH-------HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cchhhCCCCCceEEEEEeeCchhhH-HHHHHHHHHHhc-------cccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 889985 45678999998764 332 211100 00000 01222223344444555544577788999999999
Q ss_pred HHHHHHHHHhCCCeEEeeCCCCceEEEEEecCC---CCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 351 ARALREGLEKTGRFEILSKDVGVPLVAFSLKDS---SAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~---~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++++.+.|+++++++++.+. ...++.++++.. ...+..++.+.|. .++|+.+.+.... ....++|++++.
T Consensus 322 ~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~gi~v~~g~~f--~~~~~iRis~~~ 394 (416)
T 1bw0_A 322 AMYLYNHIGECIGLAPTMPR-GAMYLMSRIDLEKYRDIKTDVEFFEKLL---EEENVQVLPGTIF--HAPGFTRLTTTR 394 (416)
T ss_dssp HHHHHHHHTTSTTEEECCCC-BTTEEEEEECGGGBSSCCSHHHHHHHHH---HHHCEECEEGGGG--TCTTEEEEECCS
T ss_pred HHHHHHHHHhCCCCcccCCC-eeEEEEEeCCHHHcCCCCCHHHHHHHHH---HHCCEEEeccccc--CCCCeEEEEecC
Confidence 99999999998778876443 345555666421 1135566666652 2789998764211 123479999864
No 63
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.94 E-value=7.3e-26 Score=219.35 Aligned_cols=307 Identities=15% Similarity=0.090 Sum_probs=209.1
Q ss_pred CChHHHHHHHHHHcCcCC----C-CCccChhhHHHHHHHHHH-HHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNY----V-DMDEYPVTTELQNRCVNM-IAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~le~~~~~~-la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~ 140 (429)
++++.+.+++.+.+.... . .+...........+++++ +++++|.+ .+.+|+|+|+|+.+++.++..
T Consensus 20 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-------~v~~~~g~t~a~~~~~~~~~~- 91 (371)
T 2e7j_A 20 KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-------VARVTNGAREAKFAVMHSLAK- 91 (371)
T ss_dssp CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-------EEEEESSHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-------EEEEeCChHHHHHHHHHHHhC-
Confidence 455778888877765431 0 011112233344567788 89999986 289999999999999998743
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEe--ccCCccccCHHHHHHHhh-----hCCeEEEEeeCCC
Q 014163 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEGYYVMNPVKAVELVD-----ENTICVAAILGST 213 (429)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~--~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~~~ 213 (429)
.+++|++++++|+++..+++..|++++.+| .+++ +.+|+++|+++++ +++++|++++++|
T Consensus 92 ------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~n 158 (371)
T 2e7j_A 92 ------------KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD-YAITPENFAQTIEETKKRGEVVLALITYPDG 158 (371)
T ss_dssp ------------TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT-CCCCHHHHHHHHHHHTTTSCEEEEEEESSCT
T ss_pred ------------CCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCC-CCcCHHHHHHHHHhhcccCCeEEEEEECCCC
Confidence 236899999999999999999999999999 7765 7899999999998 6889999999999
Q ss_pred ccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCC
Q 014163 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 293 (429)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~ 293 (429)
++|.+.|+++|.++|++| |+++|+|++|+.+..+ .++...++|+++.+.||++++|.|+|+++++++
T Consensus 159 ptG~~~~~~~i~~~~~~~------~~~li~D~a~~~~~~~-------~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 159 NYGNLPDVKKIAKVCSEY------DVPLLVNGAYAIGRMP-------VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225 (371)
T ss_dssp TTCCCCCHHHHHHHHHTT------TCCEEEECTTTBTTBC-------CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCcccCCHHHHHHHHHHc------CCeEEEECccccCCCC-------CChhhcCCCEEEecCCcCCCCCCCcEEEEEech
Confidence 999999999999999999 9999999999875432 111112478999999999888889999998653
Q ss_pred CCcccc-cccccCCCCCCCCCcee-ccCCchhHHHHHHHHHHHcCHHHHHHHHHHH--HHHHHHHHHHHHhCCCeEEeeC
Q 014163 294 DDLPDE-LVFHINYLGSDQPTFTL-NFSKGSSQIIAQYYQFIRLGFEGYKNIMENC--MGNARALREGLEKTGRFEILSK 369 (429)
Q Consensus 294 ~~~~~~-~~~~~~~~~~~~~~~~~-~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~~ 369 (429)
.. +. +..... +... ...+ .++.+.....++.++++.+.. +..++. .++++++.+.|+++ +++++.+
T Consensus 226 -~~-~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 295 (371)
T 2e7j_A 226 -WA-EIVLRRSEK--YKNK-EVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGD 295 (371)
T ss_dssp -TT-TTTTCBCSS--CTTS-BGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESS
T ss_pred -hh-hhhcccccc--Cccc-ccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecC
Confidence 22 22 211111 0000 0000 134443445455556654332 556677 88999999999998 5888754
Q ss_pred CC-CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCC--CCCCceEEE-EEecc
Q 014163 370 DV-GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPM--SYPWSTKLR-VISHL 426 (429)
Q Consensus 370 ~~-~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~--~~~~~~~lR-i~~~~ 426 (429)
+. ..+++.++++ +..++.+.|. ++|+.+... ... .-....++| ++++.
T Consensus 296 ~~~~~~~~~~~~~-----~~~~~~~~l~----~~gi~~~~~~~~~~~~g~~~~~iRii~~~~ 348 (371)
T 2e7j_A 296 NPHNHDLMFFHAE-----VLYEISKKAK----GGRFFLYRELKSRKIHGIKPGLTRYFKLST 348 (371)
T ss_dssp SSCCSSEEEEECH-----HHHHHHHHSS----SGGGHHHHHHHHTTEECSCTTCCSEEEEEC
T ss_pred CCccCceEEEECC-----CHHHHHHHHH----HCCEEEEeccccccccCCCCCceEEEEeec
Confidence 31 3667777763 3345555554 899887541 100 001134689 99873
No 64
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.94 E-value=2.1e-24 Score=208.41 Aligned_cols=312 Identities=14% Similarity=0.021 Sum_probs=214.7
Q ss_pred CCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
+...++|....+.. ++|.+.+++.+.+... ..| ..+...+ +++++++++|++.+ ...+|+|+++|+.+
T Consensus 25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~y-~~~~~~~----l~~~la~~~~~~~~-----~i~~~~g~t~al~~ 93 (361)
T 3ftb_A 25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNL-GVY-PDVNYRR----LNKSIENYLKLKDI-----GIVLGNGASEIIEL 93 (361)
T ss_dssp ---CEETTCCCCTTCSCHHHHTTHHHHHHGG-GSC-CCTTCHH----HHHHHHHHHTCCSC-----EEEEESSHHHHHHH
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHHHh-cCC-CCccHHH----HHHHHHHHhCCCcc-----eEEEcCCHHHHHHH
Confidence 33445556555443 4567877777666542 222 2234444 45567888887652 48999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCC
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS 212 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 212 (429)
++.++ ++|+++.++|.++...++..|++++.+|++++ +.+|+++|++++++ +++|++++++
T Consensus 94 ~~~~~-----------------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~l~~~l~~-~~~v~i~~p~ 154 (361)
T 3ftb_A 94 SISLF-----------------EKILIIVPSYAEYEINAKKHGVSVVFSYLDEN-MCIDYEDIISKIDD-VDSVIIGNPN 154 (361)
T ss_dssp HHTTC-----------------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTT-SCCCHHHHHHHTTT-CSEEEEETTB
T ss_pred HHHHc-----------------CcEEEecCChHHHHHHHHHcCCeEEEeecCcc-cCCCHHHHHHhccC-CCEEEEeCCC
Confidence 88766 27999999999999999999999999999865 56889999999998 9999999999
Q ss_pred CccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCC-CCCCeEE
Q 014163 213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGW 287 (429)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~-~p~g~g~ 287 (429)
||||.+.+ +++|+++|++| |+++|+|++|+++... ........ .....+.+..+.+|.++ ++.++|+
T Consensus 155 nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~ 226 (361)
T 3ftb_A 155 NPNGGLINKEKFIHVLKLAEEK------KKTIIIDEAFIEFTGD--PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGY 226 (361)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHH------TCEEEEECSSGGGTCC--TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEE
T ss_pred CCCCCCCCHHHHHHHHHHhhhc------CCEEEEECcchhhcCC--cccchhHhcccCCCEEEEeeChhhcCCCCcceeE
Confidence 99999865 67788888899 9999999999875431 10111111 12234466778899775 6778899
Q ss_pred EEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhCCCeE-
Q 014163 288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFE- 365 (429)
Q Consensus 288 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~- 365 (429)
+++.+++.. +.+..... . ++. ..+.+.++...+. .+.+++..++..++++++.+.|+++|+++
T Consensus 227 ~~~~~~~~~-~~~~~~~~-------~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 291 (361)
T 3ftb_A 227 GITNNKEIA-AKIKAKQN-------P----WNI---NCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKR 291 (361)
T ss_dssp EEESCHHHH-HHHHTTSC-------T----TCS---CHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEE
T ss_pred EEeCCHHHH-HHHHhhCC-------C----CCC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 875543322 22111100 1 122 2233444444443 46678888999999999999999998888
Q ss_pred EeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+.. + ..+++.+++++ .+..++.+.|. ++|+.+++.......+..++|+++++.
T Consensus 292 ~~~-~-~~~~~~~~~~~---~~~~~l~~~l~----~~gi~v~~g~~~~~~~~~~iRis~~~~ 344 (361)
T 3ftb_A 292 VFS-P-HANFVLCRLEN---ISGEKLYDSLL----KEDIVIRRCCNFIGLDDSFVRFAIKDE 344 (361)
T ss_dssp EEC-C-SSSEEEEEESS---SCHHHHHHHHH----TTTEECEECTTSTTCCTTEEEEECCCH
T ss_pred ecC-C-CCeEEEEEcCC---CCHHHHHHHHH----HCCeEEeeCccCCCCCCCEEEEEcCCH
Confidence 553 3 46677777743 46677787777 889998765222223456799998753
No 65
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=218.27 Aligned_cols=339 Identities=14% Similarity=0.039 Sum_probs=226.0
Q ss_pred hcCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCc-cccccccCC--ChHHHHHHHHHHcCc--C---CCC-CccCh----
Q 014163 25 AAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL-NLASFVTTW--MEPECDKLVMASINK--N---YVD-MDEYP---- 91 (429)
Q Consensus 25 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~--~---~~~-~~~~~---- 91 (429)
..+..-++|+.|.+...|.-.+.+...++.+... +-+.+.--. ..+.+... .++- . .++ -+..|
T Consensus 34 ~ll~~r~~P~~g~~d~~ie~~l~~la~mdsnn~~~~~g~GERE~Rv~s~lv~rr---h~~~~HGiGRSGd~~~~QPKAaG 110 (501)
T 3hl2_A 34 LLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARR---HYRFIHGIGRSGDISAVQPKAAG 110 (501)
T ss_dssp HHHHHCCCCSSCCCHHHHHHHHHHHHTTBGGGCSSCCCCSSCCCCCSCHHHHHH---TTTCCSCBSCSSCTTCCCTTBHH
T ss_pred HHHHcCCCCccCCCHHHHHHHHHHHHhhccCCCcccCCcccchHHHHHHHHHhh---ccCcccCCCCccccccCCCCccc
Confidence 4555569999999998888888776654322111 112222111 11222222 2211 1 011 11112
Q ss_pred ---hhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHH
Q 014163 92 ---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE 168 (429)
Q Consensus 92 ---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~ 168 (429)
-..--+..+.+|++.+ |++.. ....+++|+|.+++..+++++++.. + +.+.|++++.+|.|+.
T Consensus 111 ssll~~ltn~l~ld~L~~~-G~~~~----~~~flVnGsTgg~lamilaa~r~~r-----p----g~d~VIvpRn~HKSv~ 176 (501)
T 3hl2_A 111 SSLLNKITNSLVLDIIKLA-GVHTV----ANCFVVPMATGMSLTLCFLTLRHKR-----P----KAKYIIWPRIDQKSCF 176 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCTTC----CEEEEESSCHHHHHHHHHHHHHHHC-----T----TCCEEEEECCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHc-CCCCC----CcEEEECcHHHHHHHHHHHHcCccc-----C----CCCEEEEecchHHHHH
Confidence 2234455778888886 99863 3467888999777777777665311 0 1268999999999999
Q ss_pred HHHHhcCceeEEEec--cCCccccCHHHHHHHhhhC---CeEEEEeeCCCc-cccccChHHHHHHHHHhhhccCCCccEE
Q 014163 169 KFARYFEVELKEVKL--EEGYYVMNPVKAVELVDEN---TICVAAILGSTL-TGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 169 ~~~~~~G~~v~~v~~--~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~~~-tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+++.+.|+++++|+. +++...+|+++|+++|++. .++++++.++++ .+.++|+++|+++|++| |+|+|
T Consensus 177 kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~------gIpll 250 (501)
T 3hl2_A 177 KSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANY------DIPHI 250 (501)
T ss_dssp HHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHH------TCCEE
T ss_pred HHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHc------CCeEE
Confidence 999999999999976 2335789999999999874 345555555554 45779999999999999 99999
Q ss_pred eecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCch
Q 014163 243 VDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS 322 (429)
Q Consensus 243 vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~ 322 (429)
||+|||.....+ ...++.-+...++|+++.|.||+++.|.|.+++++++++.+.. ....|. |++++
T Consensus 251 VDeAhGah~~~~-~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~---~~~~yP----------Gr~S~ 316 (501)
T 3hl2_A 251 VNNAYGVQSSKC-MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQE---ISKMYP----------GRASA 316 (501)
T ss_dssp EECTTCTTCHHH-HHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHH---HHHTSC----------SCBCS
T ss_pred EeCcchhhhhhh-hhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHH---HHHhCC----------CCCCC
Confidence 999999764321 1101111122249999999999999999988877776543322 122332 56667
Q ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCC---CCCCHHHHHHHHH
Q 014163 323 SQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDS---SAHTVFEISEGLR 396 (429)
Q Consensus 323 ~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~---~~~~~~~~~~~L~ 396 (429)
+..+.+|+++..+|.+||++.+++..+++++|.++|+++. +-+++..+...--+++.+... .+.+...+..+|.
T Consensus 317 Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf 396 (501)
T 3hl2_A 317 SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLF 396 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHH
Confidence 8899999999999999999999999999999999999864 245664431122345554321 1234567777777
Q ss_pred HHHhccCc
Q 014163 397 KKLNRFQV 404 (429)
Q Consensus 397 ~~l~~~G~ 404 (429)
.+++
T Consensus 397 ----~r~v 400 (501)
T 3hl2_A 397 ----TRQV 400 (501)
T ss_dssp ----HTTC
T ss_pred ----hcCC
Confidence 6654
No 66
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-25 Score=222.23 Aligned_cols=335 Identities=12% Similarity=0.063 Sum_probs=229.8
Q ss_pred CCCCCccccccccCCC-hHHHHHHHHHHcCc-CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHH
Q 014163 53 DGNPRLNLASFVTTWM-EPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~ 130 (429)
.++..++|+.+.+..+ ++.+.+++.++++. ....|....+..++++++.+++.+.+|.+.+. ..+.+|+|+++|+
T Consensus 55 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~---~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA---ENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG---GGEEEESHHHHHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh---hhEEEeCCHHHHH
Confidence 3455677888877654 46688888888875 23345555577899999999998888875432 2489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC-----------ccccCHHHHHHHh
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-----------YYVMNPVKAVELV 199 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-----------~~~~d~~~l~~~i 199 (429)
..++.++.+ .+++|++++++|.++...++..|++++.+|++++ ++.+|+++|++++
T Consensus 132 ~~~~~~l~~-------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 198 (447)
T 3b46_A 132 LSCLMGLLN-------------AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI 198 (447)
T ss_dssp HHHHHHHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTC
T ss_pred HHHHHHHcC-------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhh
Confidence 999988754 1368999999999999999999999999998653 3689999999999
Q ss_pred hhCCeEEEEeeCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcc-cc--CCCCeeEEEE
Q 014163 200 DENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DF--RLPLVKSINV 273 (429)
Q Consensus 200 ~~~~~~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~--~~~~~d~~~~ 273 (429)
++++++|++++++||||.+ +++++|+++|++| |+++|+|++|+++.. ..+.... .+ +..+.+.+..
T Consensus 199 ~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 199 TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH------NVVIISDEVYEHLYF--TDSFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCGGGSCHHHHTTEEEEE
T ss_pred ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc------CcEEEEeccchhccc--CCCCcCHHHcCCCCCCcEEEEe
Confidence 9889999999999999998 5699999999999 999999999987432 1110110 11 1125788899
Q ss_pred cCcccCC-CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Q 014163 274 SGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNA 351 (429)
Q Consensus 274 s~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~ 351 (429)
+.+|+++ +++++|+++.++++.. +.+.....+.. ++.+.....++..+++... .+.+++..++..+++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~-~~l~~~~~~~~---------~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~ 340 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELL-SYAAKAHTRIC---------FASPSPLQEACANSINDALKIGYFEKMRQEYINKF 340 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHH-HHHHHHHHHHT---------SSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHH-HHHHHHHhhcc---------CCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 9999875 6778999887333222 22111111110 1222223333344444322 334677888899999
Q ss_pred HHHHHHHHhCCCeEEeeCCCCceEEEEEecCCC-------------CCCHHHHHHHHHHHHhccCceeccc--CCCCC--
Q 014163 352 RALREGLEKTGRFEILSKDVGVPLVAFSLKDSS-------------AHTVFEISEGLRKKLNRFQVVYPQK--LPMSY-- 414 (429)
Q Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-------------~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~-- 414 (429)
+++.+.|++++ +++..+. ...++.+++.... ..+..++.+.|.+ ++|+.+.+. +....
T Consensus 341 ~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~---~~gV~v~pg~~f~~~~~~ 415 (447)
T 3b46_A 341 KIFTSIFDELG-LPYTAPE-GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLIN---ELGVVAIPPTEFYIKEHE 415 (447)
T ss_dssp HHHHHHHHHHT-CCEECCS-BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHH---HTCEECBCGGGGSCGGGG
T ss_pred HHHHHHHHHCC-CeecCCC-eeEEEEEecccccCccccccccccccCCCHHHHHHHHHH---hCCEEEECchHhCCCCcc
Confidence 99999999885 7766432 3445556664210 1234466665541 579988654 11110
Q ss_pred -CCceEEEEEecc
Q 014163 415 -PWSTKLRVISHL 426 (429)
Q Consensus 415 -~~~~~lRi~~~~ 426 (429)
.+..++|++++.
T Consensus 416 ~~~~~~iRls~~~ 428 (447)
T 3b46_A 416 KAAENLLRFAVCK 428 (447)
T ss_dssp GGGTTEEEEECCS
T ss_pred CCCCCEEEEEEeC
Confidence 124679999875
No 67
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=2.2e-25 Score=219.21 Aligned_cols=325 Identities=13% Similarity=0.011 Sum_probs=224.3
Q ss_pred CCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
+...++|..+.+.. +++.+.+++ ..+......|...++..++++++.+++.+.+|.+.+. ..+.+|+|+++|+.+
T Consensus 42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~t~a~~~ 117 (409)
T 2gb3_A 42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP---ENVLVTNGGSEAILF 117 (409)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG---GGEEEESHHHHHHHH
T ss_pred CCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH---HHEEEeCCHHHHHHH
Confidence 34444556665553 456788888 8886654455555678899999999999888865432 248899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEeeC
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILG 211 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~ 211 (429)
++.++.. .+++|+++.++|.++..+++..|++++.+|.++ +++.+ +++|++++++++++|+++++
T Consensus 118 ~~~~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p 183 (409)
T 2gb3_A 118 SFAVIAN-------------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNP 183 (409)
T ss_dssp HHHHHCC-------------TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESS
T ss_pred HHHHhCC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCC
Confidence 9988743 136899999999999999999999999999874 33556 89999999888999999999
Q ss_pred CCcccccc---ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCC-CCCCeE
Q 014163 212 STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVG 286 (429)
Q Consensus 212 ~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~-~p~g~g 286 (429)
+||+|.+. ++++|+++|+++ |+++|+|++|+++.. ....... + +..+.|+++.+.||+++ ++.++|
T Consensus 184 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~Dea~~~~~~--~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G 254 (409)
T 2gb3_A 184 CNPTGVVYGKDEMRYLVEIAERH------GLFLIVDEVYSEIVF--RGEFASA-LSIESDKVVVIDSVSKKFSACGARVG 254 (409)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBC--SSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCCE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc------CCEEEEECccccccc--CCCCCCc-cccCCCCEEEEecchhccCCccceEE
Confidence 99999984 589999999999 999999999987532 1111111 2 22357999999999885 455689
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014163 287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (429)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 366 (429)
++++++++.. +.+........ +.+.....++.++++. +.+.+++..++..++++++.+.|+++ ++++
T Consensus 255 ~~~~~~~~l~-~~l~~~~~~~~----------~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 321 (409)
T 2gb3_A 255 CLITRNEELI-SHAMKLAQGRL----------APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEH-GLKR 321 (409)
T ss_dssp EEECSCHHHH-HHHHHHHHHSC----------CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred EEEECcHHHH-HHHHHHHhccC----------CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHc-Ccee
Confidence 9887542222 22211111000 1111222223333322 46678888899999999999999988 4776
Q ss_pred -eeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhcc------Cceeccc--CCCC-CCCceEEEEEecc
Q 014163 367 -LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRF------QVVYPQK--LPMS-YPWSTKLRVISHL 426 (429)
Q Consensus 367 -~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~------G~~~~~~--~~~~-~~~~~~lRi~~~~ 426 (429)
..+. ...++.++++ +.+..++.+.|. ++ |+.+.+. +... ..+..++|++++.
T Consensus 322 ~~~~~-~~~~~~~~~~---~~~~~~l~~~l~----~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~ 383 (409)
T 2gb3_A 322 FTKPS-GAFYITAELP---VEDAEEFARWML----TDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVL 383 (409)
T ss_dssp BCCCS-BSSEEEEECS---SSCHHHHHHHHH----HSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCS
T ss_pred eeCCC-eeEEEEEEeC---CCCHHHHHHHHH----hccccccCcEEEeCchHhCCCCCCCCCEEEEEeCC
Confidence 4332 3334444553 346677777777 66 9988754 1110 1235679999863
No 68
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.94 E-value=7.3e-25 Score=215.21 Aligned_cols=328 Identities=13% Similarity=0.024 Sum_probs=220.8
Q ss_pred CCCCccccccccCC---ChHHHHHHHHHHcCcC---CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCch
Q 014163 54 GNPRLNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS 127 (429)
Q Consensus 54 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t 127 (429)
|+..++|..+.+.. +++.+.+++.+.+... .. |....+..++++++.+++.+.+|.+.+. ..+.+|+|++
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~---~~v~~t~g~t 108 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSP---ENIVITIGGT 108 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCG---GGEEEESHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCc---ceEEEecCHH
Confidence 33455666665532 4566888887776543 23 4445577899999888888878854321 2488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh----h--
Q 014163 128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E-- 201 (429)
Q Consensus 128 ~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~----~-- 201 (429)
+|+.+++.++.. .+++|+++.++|.++...++..|++++.+|.+++ + +|+++|+++++ +
T Consensus 109 ~a~~~~~~~~~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~ 173 (407)
T 2zc0_A 109 GALDLLGRVLID-------------PGDVVITENPSYINTLLAFEQLGAKIEGVPVDND-G-MRVDLLEEKIKELKAKGQ 173 (407)
T ss_dssp HHHHHHHHHHCC-------------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC-------------CCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC-C-CCHHHHHHHHHhhhcccC
Confidence 999999988753 1368999999999999999999999999999765 4 99999999998 6
Q ss_pred CCeEE-EEeeCCCccccccChH---HHHHHHHHhhhccCCCccEEeecccccccccccCCCC-c-cccCCCCeeEEEEcC
Q 014163 202 NTICV-AAILGSTLTGEFEDVK---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLPLVKSINVSG 275 (429)
Q Consensus 202 ~~~~v-~~~~~~~~tG~~~~l~---~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~d~~~~s~ 275 (429)
++++| ++++++||||.+.|.+ +|+++|++| |+++|+|++|+++.. ..... . ..+...+.+.+..+.
T Consensus 174 ~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~ 245 (407)
T 2zc0_A 174 KVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY------DLLIIEDTAYNFMRY--EGGDIVPLKALDNEGRVIVAGTL 245 (407)
T ss_dssp CEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTSBS--SCSSCCCGGGGCSSCCEEEEEES
T ss_pred CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEECCCccccc--CCCCCCChhhcCCCCCEEEEccc
Confidence 67776 4678899999998876 999999999 999999999987532 11110 0 111112345667778
Q ss_pred cccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-H-HHHHHHHHHHHHHHHH
Q 014163 276 HKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-F-EGYKNIMENCMGNARA 353 (429)
Q Consensus 276 hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~-~g~~~~~~~~~~~~~~ 353 (429)
+|+++++.++|++++++ + +.+.+........ .+.+.....++..+++... . +.+++..++..+++++
T Consensus 246 sK~~~~G~r~G~~~~~~-~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (407)
T 2zc0_A 246 SKVLGTGFRIGWIIAEG-E-ILKKVLMQKQPID---------FCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDI 314 (407)
T ss_dssp TTTTCTTSCCEEEECCH-H-HHHHHHHHHTTTT---------SSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHH
T ss_pred ccccCCCcceEEEecCH-H-HHHHHHHHHHhhc---------CCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 99988666799988742 2 2222211111100 0111122222333333211 2 4466777888889999
Q ss_pred HHHHHHh-CCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccC--CCCCCCceEEEEEecc
Q 014163 354 LREGLEK-TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKL--PMSYPWSTKLRVISHL 426 (429)
Q Consensus 354 l~~~L~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~--~~~~~~~~~lRi~~~~ 426 (429)
+.+.|++ .++++++.+. ...++.++++. +.+..++.+.|. ++ |+.+.+.. .....+..++|++++.
T Consensus 315 l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~l~----~~~gi~v~~g~~~~~~~~~~~~iRis~~~ 384 (407)
T 2zc0_A 315 MLKALENHLPNAEFTKPI-AGMFVMFFLPE--GADGISFANELM----EREGVVVVPGKPFYTDESGKNAIRLNFSR 384 (407)
T ss_dssp HHHHHHHHCTTSCBCCCS-BSSEEEEECST--TCCHHHHHHHHH----HHTCEECBCSGGGCSSSCCTTEEEEECSS
T ss_pred HHHHHHHhCCCCEEecCC-CcEEEEEEcCC--CCCHHHHHHHHH----HhCCeEEECchhccCCCCCCCeEEEEeCC
Confidence 9999987 4667665433 44566677643 456777887777 77 99987641 1111245679999875
No 69
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.94 E-value=6.6e-25 Score=214.98 Aligned_cols=328 Identities=11% Similarity=0.015 Sum_probs=222.6
Q ss_pred CccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 57 RLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
.++|....+.. ++|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ..+.+|+|+++|+.+++.
T Consensus 33 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~v~~t~g~~~a~~~~~~ 107 (399)
T 1c7n_A 33 VVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQT---DWIINTAGVVPAVFNAVR 107 (399)
T ss_dssp CCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCG---GGEEEESSHHHHHHHHHH
T ss_pred ceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCCh---hhEEEcCCHHHHHHHHHH
Confidence 34455555543 45778888887775433334332 7888999999998888854321 248899999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc-CC-ccccCHHHHHHHhh-hCCeEEEEeeCC
Q 014163 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EG-YYVMNPVKAVELVD-ENTICVAAILGS 212 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~-~~~~d~~~l~~~i~-~~~~~v~~~~~~ 212 (429)
++.. .+++|+++.++|.++..+++..|++++.+|.+ ++ ++.+|+++|+++++ +++++|++++++
T Consensus 108 ~l~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~ 174 (399)
T 1c7n_A 108 EFTK-------------PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH 174 (399)
T ss_dssp HHCC-------------TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB
T ss_pred HhcC-------------CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCC
Confidence 8743 13689999999999999999999999999885 32 36799999999998 678999999999
Q ss_pred CccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CC----CCeeEEEEcCcccCC-CCC
Q 014163 213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL----PLVKSINVSGHKYGL-VYA 283 (429)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~----~~~d~~~~s~hK~~~-~p~ 283 (429)
||||.+.| +++|+++|++| ++++|+|++|+++.. .......+ .. ...+.+..+.+|+++ ++.
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 245 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKDIVLKS------DLMLWSDEIHFDLIM---PGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGM 245 (399)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHS------SCEEEEECTTTTCBC---TTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGG
T ss_pred CCCCcCcCHHHHHHHHHHHHHc------CCEEEEEcccccccc---CCCCcccHHHcCccccCcEEEEEeChhhccccch
Confidence 99999988 99999999999 999999999987432 11111111 11 135677889999876 666
Q ss_pred CeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q 014163 284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TG 362 (429)
Q Consensus 284 g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~ 362 (429)
++|++++++++.. +.+......... ++.+.....++.++++. +.+.+++..++..++++++.+.|++ +|
T Consensus 246 r~G~~~~~~~~~~-~~l~~~~~~~~~--------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 315 (399)
T 1c7n_A 246 GMSNIIIKNPDIR-ERFTKSRDATSG--------MPFTTLGYKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHP 315 (399)
T ss_dssp CCEEEECCCHHHH-HHHHHHHHHTTC--------CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred heEEEEECCHHHH-HHHHHHHhhccc--------CCCCHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7899887543222 222111111100 12222233333334432 3566788888899999999999998 77
Q ss_pred CeEEeeCCCCceEE-EEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 363 RFEILSKDVGVPLV-AFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 363 ~~~~~~~~~~~~~v-~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+++++.+ ..+++ .+.++.. +.+..++.+.|.+ ++|+.+.+.......+..++|++++..
T Consensus 316 ~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~~---~~gi~v~~g~~~~~~~~~~iRis~~~~ 375 (399)
T 1c7n_A 316 EIKAPLI--EGTYLQWIDFRAL-KMDHKAMEEFMIH---KAQIFFDEGYIFGDGGIGFERINLAAP 375 (399)
T ss_dssp TSBCCCC--SBSSEEEEECGGG-CCCHHHHHHHHHH---TTCCCCEEGGGGCGGGTTEEEEECCSC
T ss_pred CCeEecC--CceEEEEEEcccC-CCCHHHHHHHHHH---hCCEEEeCccccCCCCCCeEEEEeccC
Confidence 7876543 34544 4566421 2456666666641 689998764211112345799998753
No 70
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.94 E-value=4.6e-25 Score=214.24 Aligned_cols=329 Identities=10% Similarity=-0.017 Sum_probs=224.9
Q ss_pred CCCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHH
Q 014163 53 DGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~ 131 (429)
.++..++|..+.+.. ++|.+.+++.+.+......|.. .+ .++++++.+++.+.+|.+.+. ....+|+|+++|+.
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~---~~i~~t~g~~~a~~ 95 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARP---EWIFPIPDVVRGLY 95 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCG---GGEEEESCHHHHHH
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCH---HHEEEeCChHHHHH
Confidence 566666777776654 4577888888877664444444 44 788889889998888865432 24899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeC
Q 014163 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG 211 (429)
Q Consensus 132 ~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 211 (429)
.++.++.. .++.|+++.++|.++...++..|++++.+|.+++ +|+++|++++++++++|+++++
T Consensus 96 ~~~~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~d~~~l~~~l~~~~~~v~i~~p 159 (377)
T 3fdb_A 96 IAIDHFTP-------------AQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG---INLHDVEKGFQAGARSILLCNP 159 (377)
T ss_dssp HHHHHHSC-------------TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS---CCHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhcC-------------CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC---CCHHHHHHHhccCCCEEEEeCC
Confidence 99888753 1258999999999999999999999999998764 9999999999999999999999
Q ss_pred CCcccccc---ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-C--CCCeeEEEEcCcccC-CCCCC
Q 014163 212 STLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-R--LPLVKSINVSGHKYG-LVYAG 284 (429)
Q Consensus 212 ~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~--~~~~d~~~~s~hK~~-~~p~g 284 (429)
+||||.+. ++++|+++|++| |+++|+|++|+.+.. ........+ . ....+.+..+.+|++ +++.+
T Consensus 160 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 231 (377)
T 3fdb_A 160 YNPLGMVFAPEWLNELCDLAHRY------DARVLVDEIHAPLVF--DGQHTVAAGVSDTAASVCITITAPSKAWNIAGLK 231 (377)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGBS--SSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc------CCEEEEEcccchhhc--CCCCCcccHHHccCCCcEEEEEeChHhccCcchh
Confidence 99999986 467778889999 999999999987432 110111111 1 123457788899987 47778
Q ss_pred eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Q 014163 285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGR 363 (429)
Q Consensus 285 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~ 363 (429)
+|++++.+++.. +.+.....+. .++.+.....+...+++. +.+.+++..++..++++++.+.|++ +|+
T Consensus 232 ~G~~~~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 300 (377)
T 3fdb_A 232 CAQIIFSNPSDA-EHWQQLSPVI---------KDGASTLGLIAAEAAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPG 300 (377)
T ss_dssp CEEEECCSHHHH-HHHHHSCHHH---------HCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred heEEEeCCHHHH-HHHHHHHHhh---------cCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 998776443222 2111110000 012222233333334432 3456788889999999999999998 777
Q ss_pred eEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 364 FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 364 ~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+++..+. ...++.+.++.. +.+ .++.+.|.+ +.|+.+.+.......+..++|++++..
T Consensus 301 ~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~l~~---~~gi~v~~g~~~~~~~~~~~Ris~~~~ 358 (377)
T 3fdb_A 301 AKITPMQ-ATYLMWIDFRDT-TIE-GSPSEFFIE---KAKVAMNDGAWFGEDGTGFCRLNFATS 358 (377)
T ss_dssp CEECCCS-BCSEEEEECTTS-CCC-SCHHHHHHH---HHCEECEEGGGGCGGGTTEEEEECCSC
T ss_pred ceEecCC-eeEEEEEECccc-CCC-HHHHHHHHH---hCCEEecCChhccCCCCCEEEEEeCCC
Confidence 8887543 233334665432 223 456666651 349998764211122456799998753
No 71
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.93 E-value=7.1e-25 Score=212.58 Aligned_cols=317 Identities=13% Similarity=0.076 Sum_probs=220.4
Q ss_pred CCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
++..++|..+.++. +++.+.+++.+.+......|....+..++++++.+++.+.+|.+.+. ..+.+|+|+++|+.+
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~---~~v~~~~g~~~a~~~ 104 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIP---DNIIITGGSSLGLFF 104 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG---GGEEEESSHHHHHHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh---hhEEECCChHHHHHH
Confidence 44555666666654 45678888887776544445555678899999999998888865432 248999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCC
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS 212 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 212 (429)
++.++.. .+++|++++++|.++...++..|++++.+| +|+++|++++++++++|++++++
T Consensus 105 ~~~~~~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~~~~~~v~~~~p~ 164 (370)
T 2z61_A 105 ALSSIID-------------DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-------FTVESLEEALSDKTKAIIINSPS 164 (370)
T ss_dssp HHHHHCC-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEEC-------SSHHHHHHHCCSSEEEEEEESSC
T ss_pred HHHHhcC-------------CCCEEEEeCCCchhHHHHHHHcCCEEEEeC-------CCHHHHHHhcccCceEEEEcCCC
Confidence 9988743 136899999999999999999999988887 78999999999889999999999
Q ss_pred CccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc-ccc-CCCCeeEEEEcCcccCC-CCCCeEEEE
Q 014163 213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDF-RLPLVKSINVSGHKYGL-VYAGVGWVV 289 (429)
Q Consensus 213 ~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~-~~~~~d~~~~s~hK~~~-~p~g~g~l~ 289 (429)
||||.+.|++ |.++|++| |+++|+|++|+.+.. ...... ..+ +..+.|.+..+.||+++ ++.++|+++
T Consensus 165 nptG~~~~~~-l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 235 (370)
T 2z61_A 165 NPLGEVIDRE-IYEFAYEN------IPYIISDEIYNGLVY--EGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVI 235 (370)
T ss_dssp TTTCCCCCHH-HHHHHHHH------CSEEEEECTTTTCBS--SSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEE
T ss_pred CCcCcccCHH-HHHHHHHc------CCEEEEEcchhhccc--CCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEE
Confidence 9999999999 99999999 999999999987532 111011 111 12367899999999885 556689988
Q ss_pred EeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014163 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG---FEGYKNIMENCMGNARALREGLEKTGRFEI 366 (429)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 366 (429)
.++ + +.+.+........ ++. ..+.+.++...+. .+.+++..++..++++++.+.|+++ ++++
T Consensus 236 ~~~-~-~~~~~~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 300 (370)
T 2z61_A 236 SND-E-IIEAILKLQQNLF---------ISA---PTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEV 300 (370)
T ss_dssp CCH-H-HHHHHHHHHHHHT---------SSS---CHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBC
T ss_pred ECH-H-HHHHHHHHHhhcc---------cCC---CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 654 2 2222211111000 122 2233444444443 4567778888999999999999988 4776
Q ss_pred eeCCCCceE-EEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 367 LSKDVGVPL-VAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 367 ~~~~~~~~~-v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
..+ ..++ +.+.++. +..++.+.|.+ ++|+.+.........+..++|+++++
T Consensus 301 ~~~--~~~~~~~~~~~~----~~~~~~~~l~~---~~gi~v~~g~~f~~~~~~~~Ri~~~~ 352 (370)
T 2z61_A 301 NNP--IGAYYVFPNIGE----DGREFAYKLLK---EKFVALTPGIGFGSKGKNYIRISYAN 352 (370)
T ss_dssp CCC--CBTTEECCBCSS----CHHHHHHHHHH---HHCEECEEGGGGCGGGSSBEEEECCS
T ss_pred cCC--CcceEEEEecCC----CHHHHHHHHHH---hCCEEEeCchhhCCCCCCEEEEEEeC
Confidence 543 3343 3334431 45566666641 57999876411111234569999874
No 72
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=1.5e-24 Score=211.86 Aligned_cols=327 Identities=9% Similarity=-0.004 Sum_probs=219.8
Q ss_pred ccccccccC-CChHHHHHHHHHHcCcCCCCCccChhhHH-HHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTE-LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
++|....+. .++|.+.+++.+.++.....|... ..+ +++++.+++.+.+|.+.+. ..+.+|+|+++|+.+++.
T Consensus 31 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~---~~v~~t~g~~~al~~~~~ 105 (390)
T 1d2f_A 31 LPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDS---QTVVYGPSVIYMVSELIR 105 (390)
T ss_dssp EECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCG---GGEEEESCHHHHHHHHHH
T ss_pred eEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCH---HHEEEcCCHHHHHHHHHH
Confidence 344555443 345778888888876543334332 566 8889888988888854321 248999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC--ccccCHHHHHHHhhh-CCeEEEEeeCC
Q 014163 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG--YYVMNPVKAVELVDE-NTICVAAILGS 212 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~--~~~~d~~~l~~~i~~-~~~~v~~~~~~ 212 (429)
++.. .+++|+++.++|.++...++..|++++.+|++++ ++.+|+++|++++++ ++++|++++++
T Consensus 106 ~l~~-------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~ 172 (390)
T 1d2f_A 106 QWSE-------------TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ 172 (390)
T ss_dssp HSSC-------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC
T ss_pred HhcC-------------CCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCC
Confidence 8743 1368999999999999999999999999998642 357999999999986 78999999999
Q ss_pred CccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCC-C-eeEEEEcCcccCC-CCCCe
Q 014163 213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLP-L-VKSINVSGHKYGL-VYAGV 285 (429)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~-~-~d~~~~s~hK~~~-~p~g~ 285 (429)
||||.+.| +++|+++|++| |+++|+|++|+.+.. .......+ .+. . .|. ..+.+|+++ ++.++
T Consensus 173 nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~ 242 (390)
T 1d2f_A 173 NPTGKVWTCDELEIMADLCERH------GVRVISDEIHMDMVW---GEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTG 242 (390)
T ss_dssp TTTCCCCCTTHHHHHHHHHHHT------TCEEEEECTTTTCBC---SSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCC
T ss_pred CCCCcCcCHHHHHHHHHHHHHc------CCEEEEEcccccccc---CCCCCcCHHHcchhhHhh-ccCccHhhcccChhh
Confidence 99999966 89999999999 999999999987532 11111111 111 2 266 888999875 66778
Q ss_pred EEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCe
Q 014163 286 GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRF 364 (429)
Q Consensus 286 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~ 364 (429)
|++++++++.. ..+..... +.. .+ ++.+.....+..++++. ..+.+++..++..++++++.+.|++ +|++
T Consensus 243 G~~~~~~~~~~-~~~~~~~~--~~~--~~---~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 313 (390)
T 1d2f_A 243 AYGIIENSSSR-DAYLSALK--GRD--GL---SSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPEL 313 (390)
T ss_dssp EEEEECSHHHH-HHHHHHHH--TTS--CC---CSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred eEEEECCHHHH-HHHHHHHh--hhc--cc---CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99987643322 22211111 000 00 12222233333344443 3556788888899999999999998 7777
Q ss_pred EEeeCCCCceEE-EEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 365 EILSKDVGVPLV-AFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 365 ~~~~~~~~~~~v-~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+++.+ ..+++ .+.++.. +.+..++.+.|.+ ++|+.+.+.......+..++|++++..
T Consensus 314 ~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~l~~---~~gi~v~~g~~f~~~~~~~~Ris~~~~ 371 (390)
T 1d2f_A 314 NWQIP--QSTYLAWLDLRPL-NIDDNALQKALIE---QEKVAIMPGYTYGEEGRGFVRLNAGCP 371 (390)
T ss_dssp CCCCC--SBCSEEEEECGGG-CCCHHHHHHHHHH---TTCEECEEGGGGCGGGTTEEEEECCSC
T ss_pred EEecC--CccEEEEEEcccc-CCCHHHHHHHHHH---HcCEEeeCccccCCCCCCeEEEEecCC
Confidence 66533 34444 4566431 2455666666551 479998764211112345799998753
No 73
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.93 E-value=1.3e-24 Score=211.52 Aligned_cols=313 Identities=13% Similarity=0.033 Sum_probs=215.3
Q ss_pred ccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHH
Q 014163 58 LNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA 136 (429)
Q Consensus 58 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a 136 (429)
++|..+.+.. +++.+.+++.+.+.. ...|....+..++++. +++++|++.+ .+.+|+|+++|+.+++.+
T Consensus 28 i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~----la~~~~~~~~-----~v~~~~g~~~a~~~~~~~ 97 (381)
T 1v2d_A 28 VNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREA----LAEEFAVEPE-----SVVVTSGATEALYVLLQS 97 (381)
T ss_dssp EECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHH----HHHHHTSCGG-----GEEEESSHHHHHHHHHHH
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHHHHHH----HHHhcCCChh-----hEEEcCChHHHHHHHHHH
Confidence 4455555543 456788888888765 2334444455555544 6777888642 389999999999999988
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc--CCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~--~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
+.. .+++|++++++|.++..+++..|++++.+|.+ ++++.+|+++|++++++++++|++++++|+
T Consensus 98 ~~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~np 164 (381)
T 1v2d_A 98 LVG-------------PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNP 164 (381)
T ss_dssp HCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTT
T ss_pred hCC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCC
Confidence 743 23689999999999999999999999999987 334789999999999988999999999999
Q ss_pred cccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-C-CCCeeEEEEcCcccCC-CCCCeEEE
Q 014163 215 TGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-R-LPLVKSINVSGHKYGL-VYAGVGWV 288 (429)
Q Consensus 215 tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~-~~~~d~~~~s~hK~~~-~p~g~g~l 288 (429)
||.+.+ +++|+++|++| |+++|+|++|+++.. . .....+ . ..+.|.+..+.||+++ ++.++|++
T Consensus 165 tG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~---g-~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~ 234 (381)
T 1v2d_A 165 TGLVFGERELEAIARLARAH------DLFLISDEVYDELYY---G-ERPRRLREFAPERTFTVGSAGKRLEATGYRVGWI 234 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHT------TCEEEEECTTTTCBS---S-SCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred CCCccCHHHHHHHHHHHHHc------CCEEEEEcCcccccc---C-CCCCCHHHhcCCCEEEEeechhhcCCcccceEEE
Confidence 999865 89999999999 999999999987532 1 111111 1 2468999999999875 45668998
Q ss_pred EEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Q 014163 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 367 (429)
++++ +.. +.+.....+.. ++.+.....++..+++... .+.+++..++..++++++.+.|++. +++++
T Consensus 235 ~~~~-~~~-~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 302 (381)
T 1v2d_A 235 VGPK-EFM-PRLAGMRQWTS---------FSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVY 302 (381)
T ss_dssp ECCT-TTH-HHHHHHHHHHT---------SSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred EeCH-HHH-HHHHHHHhhcc---------cCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec
Confidence 8743 332 22211111110 1222223333444444321 3457888899999999999999986 48776
Q ss_pred eCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc--CCCCCCCceEEEEEecc
Q 014163 368 SKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK--LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~~~~~~lRi~~~~ 426 (429)
.+. ...++.+.+++. + +.+.|. ++|+.+.+. +.....+..++|++++.
T Consensus 303 ~~~-~~~~~~~~~~~~---~---~~~~l~----~~gi~v~~g~~~~~~~~~~~~iRi~~~~ 352 (381)
T 1v2d_A 303 VPE-GTYFLMAELPGW---D---AFRLVE----EARVALIPASAFYLEDPPKDLFRFAFCK 352 (381)
T ss_dssp CCS-BSSEEEEECTTC---C---HHHHHH----HTCEECEEGGGGCSSSCCTTEEEEECCS
T ss_pred CCC-cceEEEEecChH---h---HHHHHH----hCCEEEecchHhCCCCCCCCEEEEEeCC
Confidence 543 344566666421 2 444555 899998764 11111245679999875
No 74
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.93 E-value=1.8e-24 Score=214.06 Aligned_cols=329 Identities=12% Similarity=0.019 Sum_probs=225.6
Q ss_pred ccccccccC-CChHHHHHHHHHHcCc---CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCC-CceEeCCchHHHHH
Q 014163 58 LNLASFVTT-WMEPECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIML 132 (429)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~g~t~a~~~ 132 (429)
++|..+.+. .++|.+.+++.+.++. ....|....+..++++++.+++.+.+|.+.+. . .+.+|+|+++|+..
T Consensus 40 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~---~~~v~~~~g~~~a~~~ 116 (429)
T 1yiz_A 40 LNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP---MTEVLVTVGAYEALYA 116 (429)
T ss_dssp EECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCT---TTSEEEESHHHHHHHH
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCC---cCCEEEecChHHHHHH
Confidence 445555554 3457788888887765 22334444567899999999999988965322 2 38999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC---------ccccCHHHHHHHhhhCC
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENT 203 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~l~~~i~~~~ 203 (429)
++.++.. .+++|+++.++|..+...++..|++++.+|.+++ ++.+|+++|++++++++
T Consensus 117 ~~~~~~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 183 (429)
T 1yiz_A 117 TIQGHVD-------------EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKT 183 (429)
T ss_dssp HHHHHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTE
T ss_pred HHHHhcC-------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCc
Confidence 9988743 1368999999999999999999999999998754 46899999999999889
Q ss_pred eEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCC-Ccc-cc-CCCCeeEEEEcCcc
Q 014163 204 ICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEW-DF-RLPLVKSINVSGHK 277 (429)
Q Consensus 204 ~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~-~~-~~~~~d~~~~s~hK 277 (429)
++|++++++||||.+.+ +++|+++|++| |+++|+|++|+++.. .... ... .+ ...+.|.+..+.+|
T Consensus 184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~s~sK 255 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMDRAELEVVANLCKKW------NVLCVSDEVYEHMVF--EPFEHIRICTLPGMWERTITIGSAGK 255 (429)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--TTSCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHc------CcEEEEecccccccc--CCCCCcChhhccCCcCceEEEecchh
Confidence 99999999999999974 99999999999 999999999987432 1111 111 11 12358999999999
Q ss_pred cCC-CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc----C--HHHHHHHHHHHHHH
Q 014163 278 YGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL----G--FEGYKNIMENCMGN 350 (429)
Q Consensus 278 ~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l----~--~~g~~~~~~~~~~~ 350 (429)
+++ ++.++|++++++ + +.+.+.....+.. ++.+.....++..+++.. + .+.+++..++..++
T Consensus 256 ~~~~~G~r~G~~~~~~-~-~~~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 324 (429)
T 1yiz_A 256 TFSLTGWKIGWAYGPE-A-LLKNLQMVHQNCV---------YTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAK 324 (429)
T ss_dssp HHTCGGGCCEEEESCH-H-HHHHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHH
T ss_pred ccCCCCcceEEEEeCH-H-HHHHHHHHHhhcc---------cCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHH
Confidence 875 556699988753 2 2222211111111 122223333444455441 2 44578888889999
Q ss_pred HHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCC----------CCCHHHHHHHHHHHHhccCceeccc--CCCCC---C
Q 014163 351 ARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS----------AHTVFEISEGLRKKLNRFQVVYPQK--LPMSY---P 415 (429)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~----------~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~---~ 415 (429)
++++.+.|++.+ +++..+. ...++.++++... ..+..++.+.|. .++|+.+.+. +.... .
T Consensus 325 ~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~gv~v~~g~~f~~~~~~~~ 399 (429)
T 1yiz_A 325 RDYMASFLAEVG-MNPTVPQ-GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMT---KSVGLQGIPPSAFYSEPNKHL 399 (429)
T ss_dssp HHHHHHHHHHHT-CEEEECS-BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHH---HHTSEECBCGGGGSCGGGGGG
T ss_pred HHHHHHHHHhCC-CcccCCC-cceEEEEEcccccccccccccccCCCHHHHHHHHH---HhCCEEEeCchHhCCCcccCC
Confidence 999999999884 8776543 3456777765310 023445555553 1689998754 11110 0
Q ss_pred CceEEEEEecc
Q 014163 416 WSTKLRVISHL 426 (429)
Q Consensus 416 ~~~~lRi~~~~ 426 (429)
+..++|++++.
T Consensus 400 ~~~~iRis~~~ 410 (429)
T 1yiz_A 400 GEDFVRYCFFK 410 (429)
T ss_dssp TTTEEEEECCS
T ss_pred CCCeEEEEecC
Confidence 24679999874
No 75
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.93 E-value=1.9e-24 Score=214.98 Aligned_cols=325 Identities=13% Similarity=0.038 Sum_probs=221.2
Q ss_pred CccccccccCC---ChHHHHHHHHHHcCcCC---CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHH
Q 014163 57 RLNLASFVTTW---MEPECDKLVMASINKNY---VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 57 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~ 130 (429)
.++|.++.|.. +.+.+.+++.+.+.... ..|....+..++++.+.+++.+.+|.+ +. ..+++|+|+++|+
T Consensus 78 ~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~---~~v~~t~G~~~al 153 (448)
T 3aow_A 78 IISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD---NDIMITSGSQQAL 153 (448)
T ss_dssp SEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT---SEEEEESSHHHHH
T ss_pred cEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch---hhEEEeCcHHHHH
Confidence 45676666643 45668888777765432 345555678899999888887778984 22 2489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh----h--CCe
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----E--NTI 204 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~----~--~~~ 204 (429)
.+++.++.+ .++.|+++.++|.++..+++..|++++.+|.+++ + +|+++|+++++ + +++
T Consensus 154 ~~~~~~l~~-------------~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~L~~~l~~~~~~~~~~k 218 (448)
T 3aow_A 154 DLIGRVFLN-------------PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE-G-MKVEILEEKLKELKSQGKKVK 218 (448)
T ss_dssp HHHHHHHCC-------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHcC-------------CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHhhhhccCCCCe
Confidence 999988754 1368999999999999999999999999999865 4 99999999998 5 678
Q ss_pred EE-EEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc--cccCCCCeeEEEEcCccc
Q 014163 205 CV-AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRLPLVKSINVSGHKY 278 (429)
Q Consensus 205 ~v-~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~~d~~~~s~hK~ 278 (429)
+| ++++++||||.+.+ +++|+++|++| |+++|+|++|+.+.. ...... ..+...+.+.+..+..|+
T Consensus 219 ~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~------~~~lI~De~y~~~~~--~g~~~~~~~~~~~~~~vi~~~S~SK~ 290 (448)
T 3aow_A 219 VVYTVPTFQNPAGVTMNEDRRKYLLELASEY------DFIVVEDDPYGELRY--SGNPEKKIKALDNEGRVIYLGTFSKI 290 (448)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECSCTTCBC--SSCCCCCTGGGCTTSCEEEEEESTTT
T ss_pred EEEECCCCCCCcCCCCCHHHHHHHHHHHHHc------CCEEEEECCCccccC--CCCCCcCHHhcCCCCCEEEEccchhh
Confidence 87 46889999999865 57999999999 999999999987532 111110 112222456677788898
Q ss_pred CCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Q 014163 279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREG 357 (429)
Q Consensus 279 ~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~~~l~~~ 357 (429)
+.++.++||++.++ + +.+.+....... + .+.+.....++..+++..+ .+.+++..++..++++++.+.
T Consensus 291 ~~~GlriG~v~~~~-~-l~~~l~~~~~~~-------~--~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (448)
T 3aow_A 291 LAPGFRIGWMVGDP-G-IIRKMEIAKQST-------D--LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEA 359 (448)
T ss_dssp TCGGGCCEEEEECH-H-HHHHHHHHHHHH-------H--SSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEEeCH-H-HHHHHHHHHHHh-------c--CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87667799998753 2 222221111100 0 1112222222333333211 234666777777899999999
Q ss_pred HHh-CC-CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc--CCCCCCCceEEEEEecc
Q 014163 358 LEK-TG-RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK--LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 358 L~~-~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~~~~~~lRi~~~~ 426 (429)
|++ +| ++++..+. ...++.++++. +.+..++.+.|. ++|+.+.+. +.....+..++|++++.
T Consensus 360 L~~~~~~g~~~~~p~-~g~~~~v~~~~--~~~~~~l~~~l~----~~gV~v~pg~~f~~~~~~~~~iRls~~~ 425 (448)
T 3aow_A 360 LEEFMPEGVKWTKPE-GGMFIWVTLPD--GIDSKKMLERAI----KKGVAYVPGEAFYAHRDVKNTMRLNFTY 425 (448)
T ss_dssp HHHHCCTTCEECCCS-BSSEEEEECST--TCCHHHHHHHHH----HTTEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHhCCCCeEEeCCC-ccEEEEEEcCC--CCCHHHHHHHHH----HCCcEEEcchhhcCCCCCCCEEEEEeCC
Confidence 987 46 48776443 44566666642 456777777777 889998764 22211345679999875
No 76
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.93 E-value=2.9e-24 Score=212.48 Aligned_cols=315 Identities=13% Similarity=0.006 Sum_probs=213.6
Q ss_pred ccccccc-C-CChHHHHHHHHHHcCcCCCCCc---cChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHH
Q 014163 59 NLASFVT-T-WMEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (429)
Q Consensus 59 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~a 133 (429)
+|.++.+ + .++|.+.+++.+.+......+. ...+......++++++++++|.+. .+++++|++|+..+
T Consensus 68 d~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~a~~~a 140 (427)
T 2w8t_A 68 LLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG-------AIVFSTGYMANLGI 140 (427)
T ss_dssp ECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHH
T ss_pred EEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc-------eEEecCcHHHHHHH
Confidence 4445443 2 2457788887776654111111 122334556677788999999853 67788888999988
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh----CCeEEEEe
Q 014163 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAI 209 (429)
Q Consensus 134 l~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~----~~~~v~~~ 209 (429)
+.++.. .++.|+++.+.|.++...++..|++++.+|. +|+++|++++++ ++++|+++
T Consensus 141 l~~l~~-------------~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~~~~v~~~ 201 (427)
T 2w8t_A 141 ISTLAG-------------KGEYVILDADSHASIYDGCQQGNAEIVRFRH------NSVEDLDKRLGRLPKEPAKLVVLE 201 (427)
T ss_dssp HHHHSC-------------TTCEEEEETTCCHHHHHHHHHSCSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred HHHhcC-------------CCCEEEECCcccHHHHHHHHHcCCeeEEeCC------CCHHHHHHHHHhccCCCCeEEEEc
Confidence 777643 2368999999999999999999998887762 689999999987 78999999
Q ss_pred eCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccC-CCCeeEEEEcCcccCCCCCCeEEE
Q 014163 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWV 288 (429)
Q Consensus 210 ~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~s~hK~~~~p~g~g~l 288 (429)
.++|++|.+.|+++|.++|++| |+++|+|++|+++...-........++ .+++|++..+.+|+++ +.| |++
T Consensus 202 ~~~n~tG~~~~l~~l~~l~~~~------g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~g-G~v 273 (427)
T 2w8t_A 202 GVYSMLGDIAPLKEMVAVAKKH------GAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVG-GFV 273 (427)
T ss_dssp SEETTTTEECCHHHHHHHHHHT------TCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCC-EEE
T ss_pred CCCCCCCCccCHHHHHHHHHHc------CCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCC-CEE
Confidence 9999999999999999999999 999999999987543100000000012 2368999999999885 555 888
Q ss_pred EEeCCCCcccccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Q 014163 289 VWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 367 (429)
+.++ +.. +.+... ..|.. .++.+.....+..++++.+. .+++..++..++++++.+.|+++ ++++.
T Consensus 274 ~~~~-~l~-~~l~~~~~~~~~--------~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 340 (427)
T 2w8t_A 274 VSNH-PKF-EAVRLACRPYIF--------TASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLG 340 (427)
T ss_dssp EECC-TTG-GGGGGTCHHHHS--------SCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEES
T ss_pred EeCH-HHH-HHHHHhcccccc--------cCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCccc
Confidence 7753 332 322211 11211 12333344444556666543 24678888999999999999988 48876
Q ss_pred eCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCCCCCceEEEEEecc
Q 014163 368 SKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~~~~~~~lRi~~~~ 426 (429)
.++...+++.+.+.+ ..+..++.+.|. ++|+.+... .+....+...+|++++.
T Consensus 341 ~~~~~~~~~~~~~~~--~~~~~~l~~~L~----~~Gi~v~~~~~~~~~~~~~~lRi~~~~ 394 (427)
T 2w8t_A 341 TETCDSAIVAVMLED--QEQAAMMWQALL----DGGLYVNMARPPATPAGTFLLRCSICA 394 (427)
T ss_dssp CSSCCSSEEEEEESS--HHHHHHHHHHHH----HTTEECEEECTTTSCTTCEEEEEECCT
T ss_pred CCCCCCCEEEEEECC--HHHHHHHHHHHH----HCCeEEeeeCCCCCCCCCeEEEEEeCC
Confidence 333145778887742 223445555555 889998765 33323346789999874
No 77
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.93 E-value=1.3e-24 Score=210.28 Aligned_cols=312 Identities=13% Similarity=0.039 Sum_probs=215.9
Q ss_pred CCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHH
Q 014163 56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (429)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al 134 (429)
..++|....+.. ++|.+.+++...+... ..|..... . ++++.+++++|++. ..+.+|+|+++|+..++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y~~~~~-~----~lr~~la~~~~~~~-----~~v~~~~g~~~a~~~~~ 99 (365)
T 3get_A 31 EVIKLASNENPFGTPPKAIECLRQNANKA-HLYPDDSM-I----ELKSTLAQKYKVQN-----ENIIIGAGSDQVIEFAI 99 (365)
T ss_dssp CCEECSSCCCTTCSCHHHHHHHHHHGGGT-TSCCCTTC-H----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHH
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCCh-H----HHHHHHHHHhCCCc-----ceEEECCCHHHHHHHHH
Confidence 345566555544 4677888888877632 22322222 4 44556788888764 24899999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
.++.. .+++|+++.++|.++...++..|++++.+|++++++ +|+++|++++++++++|++++++||
T Consensus 100 ~~l~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~np 165 (365)
T 3get_A 100 HSKLN-------------SKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNP 165 (365)
T ss_dssp HHHCC-------------TTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTT
T ss_pred HHHhC-------------CCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCC
Confidence 88743 136899999999999999999999999999833348 9999999999999999999999999
Q ss_pred cccccChHHHHHHHH--HhhhccCCCccEEeeccccccc---ccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEEE
Q 014163 215 TGEFEDVKLLHDLLT--KKNEETGWDTPIHVDAASGGFI---APFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWV 288 (429)
Q Consensus 215 tG~~~~l~~I~~la~--~~~~~~~~~~~l~vD~a~~~~~---~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~l 288 (429)
||.+.|+++|.++++ ++ ++++++|++|+.+. .................+.+..+.+|+++ ++.++|++
T Consensus 166 tG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 239 (365)
T 3get_A 166 LGECLDASEATEFIKGVNE------DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG 239 (365)
T ss_dssp TCCCCCHHHHHHHHHTSCT------TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE
T ss_pred CCCCcCHHHHHHHHHhCCC------CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEE
Confidence 999999999999998 77 99999999998643 10000000000111245677889999874 77889998
Q ss_pred EEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEee
Q 014163 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILS 368 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 368 (429)
+.+ ++.. +.+...... .+.+.....++..+++ ..+.+++..++..++++++.+.|+++ ++++..
T Consensus 240 ~~~-~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 303 (365)
T 3get_A 240 IAN-ANII-SAFYKLRAP-----------FNVSNLALKAAVAAMD--DDEFTEKTLENNFSQMELYKEFAKKH-NIKIID 303 (365)
T ss_dssp EEC-HHHH-HHHHHHSCT-----------TCSCHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECC
T ss_pred EcC-HHHH-HHHHHhcCC-----------CCcCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECC
Confidence 873 2222 222111110 1122223333333333 24667888899999999999999998 488753
Q ss_pred CCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 369 KDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 369 ~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
+ ..+++.+.++. . +..++.+.|. ++|+.++...... ..++|+++++
T Consensus 304 ~--~~~~~~~~~~~--~-~~~~~~~~l~----~~gi~v~~g~~~~---~~~iRis~~~ 349 (365)
T 3get_A 304 S--YTNFITYFFDE--K-NSTDLSEKLL----KKGIIIRNLKSYG---LNAIRITIGT 349 (365)
T ss_dssp C--SSSEEEEECSS--S-CHHHHHHHHH----TTTEECEECGGGT---CSEEEEECCC
T ss_pred C--CCeEEEEECCC--C-CHHHHHHHHH----HCCEEEEECccCC---CCEEEEEcCC
Confidence 3 45666677643 2 6677777777 8999987652111 5679999875
No 78
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.93 E-value=2.8e-24 Score=206.98 Aligned_cols=310 Identities=14% Similarity=0.029 Sum_probs=218.4
Q ss_pred CCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
++..++|....+.. ++|.+.+++...+... ..| ..++ ..++++++++++|++. ....+|+|+++|+.+
T Consensus 15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y-~~~~----~~~l~~~la~~~~~~~-----~~i~~~~g~~~a~~~ 83 (354)
T 3ly1_A 15 TDNPIRINFNENPLGMSPKAQAAARDAVVKA-NRY-AKNE----ILMLGNKLAAHHQVEA-----PSILLTAGSSEGIRA 83 (354)
T ss_dssp SSSCEECSSCCCSSCCCHHHHHHHHHTGGGT-TSC-CHHH----HHHHHHHHHHHTTSCG-----GGEEEESHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHhhC-cCC-CCCc----hHHHHHHHHHHhCCCh-----HHEEEeCChHHHHHH
Confidence 34445566665554 5677889888877642 222 1223 3466677899999865 248999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh--hCCeEEEEee
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL 210 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--~~~~~v~~~~ 210 (429)
++.++.. .+++|+++.++|.++...++..|++++.+|.+++ +.+|+++|+++++ +++++|++++
T Consensus 84 ~~~~l~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~ 149 (354)
T 3ly1_A 84 AIEAYAS-------------LEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVN 149 (354)
T ss_dssp HHHHHCC-------------TTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEES
T ss_pred HHHHHhC-------------CCCeEEECCCCchHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeC
Confidence 9888743 1368999999999999999999999999999865 8899999999999 7899999999
Q ss_pred CCCccccccChHHHHHHHHH--hhhccCCCccEEeecccccccccccCCCCc--cc-cCCC-CeeEEEEcCcccCC-CCC
Q 014163 211 GSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFIAPFLYPDLE--WD-FRLP-LVKSINVSGHKYGL-VYA 283 (429)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~-~~~~-~~d~~~~s~hK~~~-~p~ 283 (429)
++||||.+.|.+++.++++. + |+++|+|++|+++.. ..... .. .... ..+.+..+.+|+++ ++.
T Consensus 150 p~nptG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 220 (354)
T 3ly1_A 150 PNNPTGTITPADVIEPWIASKPA------NTMFIVDEAYAEFVN---DPRFRSISPMITQGAENIILLKTFSKIHAMAGM 220 (354)
T ss_dssp SCTTTCCCCCHHHHHHHHHTCCT------TEEEEEECTTGGGCC---CTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG
T ss_pred CCCCcCCCcCHHHHHHHHHhCCC------CeEEEEeccHHHhcc---ccccCCHHHHhhhcCCCEEEEeeChhhccChhh
Confidence 99999999999998888888 8 999999999986432 11110 11 1112 45678889999885 778
Q ss_pred CeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014163 284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTG 362 (429)
Q Consensus 284 g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~~~l~~~L~~~~ 362 (429)
++|+++.++ + +.+.+...... ++. ....+.++...+. .+.+++..++..++++++.+.|++++
T Consensus 221 r~G~~~~~~-~-~~~~~~~~~~~-----------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 284 (354)
T 3ly1_A 221 RVGYAVAHP-T-VIALMGRYVAG-----------EKI---NFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLK 284 (354)
T ss_dssp CCEEEECCH-H-HHHHHGGGTTC-----------SCC---CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hheeeecCH-H-HHHHHHHhcCC-----------CCC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899988632 2 22222111111 122 2223334444443 35678888999999999999999884
Q ss_pred CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 363 RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+++. ++ ..+++.+.++. +..++.+.|. ++|+.++ ... .....++|++++++
T Consensus 285 -~~~~-~~-~~~~~~~~~~~----~~~~~~~~l~----~~gi~v~-g~~--~~~~~~iRis~~~~ 335 (354)
T 3ly1_A 285 -LPYL-PS-EGNFVFHQLVV----PLKDYQTHMA----DAGVLIG-RAF--PPADNWCRISLGTP 335 (354)
T ss_dssp -CCBC-CC-CSSEEEEECSS----CHHHHHHHHH----HTTEECC-CCC--TTCTTEEEEECCCH
T ss_pred -CeEC-CC-CceEEEEECCC----CHHHHHHHHH----HCCEEEe-ecC--CCCCCEEEEEcCCH
Confidence 7665 22 45666676642 5667777777 8999877 311 12456799998753
No 79
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=2.6e-24 Score=211.81 Aligned_cols=310 Identities=15% Similarity=0.012 Sum_probs=210.4
Q ss_pred CChHHHHHHHHHHcCcCCCCCccC----hhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEY----PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~ 142 (429)
++++.+.+++.+.+...+..+... .+..+..+++++++++++|.+.+ .+++|+|+++++..++.+++....
T Consensus 39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-----~v~~~~g~t~al~~al~~~~~~~~ 113 (416)
T 1qz9_A 39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-----EVVVTDTTSINLFKVLSAALRVQA 113 (416)
T ss_dssp CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT-----SEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcc-----cEEEeCChhHHHHHHHHhhccccc
Confidence 445667777777775433222111 12234556788899999998642 378899999999888887652100
Q ss_pred HHHHhcCCCCCCcEEEEcCCCchHHHHH----HHhc--CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccc
Q 014163 143 QKRKEQGKPYDKPNIVTGANVQVCWEKF----ARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG 216 (429)
Q Consensus 143 ~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~~~~--G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG 216 (429)
.+.+| +..|+++..+|.++..+ ++.. |++++.+|+ +++|++++++++++|++++++|+||
T Consensus 114 --~~~~g----d~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~~~~~v~~~~~~nptG 179 (416)
T 1qz9_A 114 --TRSPE----RRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--------PEELPQAIDQDTAVVMLTHVNYKTG 179 (416)
T ss_dssp --HHSTT----CCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--------GGGHHHHCSTTEEEEEEESBCTTTC
T ss_pred --ccCCC----CcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--------HHHHHHHhCCCceEEEEeccccCcc
Confidence 00112 12477778899875543 3334 888888875 6778999988899999999999999
Q ss_pred cccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCe-EEEEEeCCCC
Q 014163 217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV-GWVVWRTKDD 295 (429)
Q Consensus 217 ~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~-g~l~~~~~~~ 295 (429)
.+.|+++|.++|+++ |+++|+|++|+.+..+ .++...++|++++++||+++++.|+ |+++++++ .
T Consensus 180 ~~~~l~~i~~l~~~~------~~~li~D~a~~~g~~~-------~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~-~ 245 (416)
T 1qz9_A 180 YMHDMQALTALSHEC------GALAIWDLAHSAGAVP-------VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQ-L 245 (416)
T ss_dssp BBCCHHHHHHHHHHH------TCEEEEECTTTTTTSC-------CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTT-T
T ss_pred cccCHHHHHHHHHHc------CCEEEEEccccccCcC-------CChhhcCCCEEEecCcccCCCCCCCeEEEEECHH-H
Confidence 999999999999999 9999999999853321 1111124899999999998888888 99988653 2
Q ss_pred ccccccc-ccCCCCCC--------C-----CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014163 296 LPDELVF-HINYLGSD--------Q-----PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT 361 (429)
Q Consensus 296 ~~~~~~~-~~~~~~~~--------~-----~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 361 (429)
. +.+.. ...|.+.. . ......++.+.....++.++++.+..++++++.++..++++++.+.|+++
T Consensus 246 ~-~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 324 (416)
T 1qz9_A 246 C-DLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQR 324 (416)
T ss_dssp T-TTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 21111 11110000 0 00011245555566677778887766778899999999999999999986
Q ss_pred -C--CeEEeeCCC---CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 362 -G--RFEILSKDV---GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 362 -~--~~~~~~~~~---~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+ +++++.+.. ..++++|++++ ..++.+.|. ++|+.+.. .+..++|++++
T Consensus 325 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~----~~gi~~~~------~~~~~lRis~~ 379 (416)
T 1qz9_A 325 CAAHELTLVTPREHAKRGSHVSFEHPE-----GYAVIQALI----DRGVIGDY------REPRIMRFGFT 379 (416)
T ss_dssp HTTSCCEECSCSSGGGBCSEEEEECTT-----HHHHHHHHH----TTTEECEE------ETTTEEEEECC
T ss_pred ccCCCeEEeCCCCHHHcCCEEEEecCC-----HHHHHHHHH----hCCcEecc------CCCCeEEEeCc
Confidence 5 688875531 35677777632 456666666 89988642 23456999985
No 80
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.93 E-value=5.2e-25 Score=213.24 Aligned_cols=313 Identities=13% Similarity=0.116 Sum_probs=213.4
Q ss_pred ccccccccCC-ChHHHHHHHHHHcCc-CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 58 LNLASFVTTW-MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 58 ~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
++|....+.. ++|.+.+++...+.. ....|.. ++.. ++++++++++|++.. ..+.+|+|+++|+.+++.
T Consensus 33 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~----~l~~~la~~~g~~~~----~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 33 VKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSE----ALRAKLKEVMQVPAG----MEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp EECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHH----HHHHHHHHHHTCCTT----CEEEEEEHHHHHHHHHHH
T ss_pred eEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHH----HHHHHHHHHhCCCCc----ceEEEcCCHHHHHHHHHH
Confidence 4566665554 456788888777653 2222322 3444 455668888898311 248999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCc
Q 014163 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL 214 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~ 214 (429)
++.. .+++|+++.++|..+...++..|++++.+|++++ +.+|+++|++++++ ++++|++++++||
T Consensus 104 ~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~v~~~~~~np 169 (367)
T 3euc_A 104 AAAR-------------PGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRAD-FTLDRGAMLAAMAEHQPAIVYLAYPNNP 169 (367)
T ss_dssp HTCC-------------TTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTT-SCCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HHcC-------------CCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCC-CCCCHHHHHHHhhccCCCEEEEcCCCCC
Confidence 7643 1368999999999999999999999999999874 78999999999998 8999999999999
Q ss_pred ccccc---ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEe
Q 014163 215 TGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291 (429)
Q Consensus 215 tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~ 291 (429)
||.+. ++++|+++|++|+ .|+++|+|++|+.+.. ......+...+.+.+..+.+|+++++.++|+++.+
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~----~~~~li~De~~~~~~~----~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~ 241 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSV----CRSLVVVDEAYQPFAQ----ESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGD 241 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTS----CBCEEEEECTTCCSSS----CCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhhhhcC----CCcEEEEeCcchhhcc----cchHHHHhhCCCEEEEecchhhcccccCceeeeeC
Confidence 99995 4666666777661 0489999999986431 11111222234567778899997777889998874
Q ss_pred CCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC
Q 014163 292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV 371 (429)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 371 (429)
+ +.. +.+..... . ++.+.....++..+++. .+.+++..++..++++++.+.|+++|++++. ++
T Consensus 242 ~-~~~-~~~~~~~~-------~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~- 304 (367)
T 3euc_A 242 P-QWL-EQLDKVRP-------P----YNVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PS- 304 (367)
T ss_dssp H-HHH-HHHGGGCC-------S----SCCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CC-
T ss_pred H-HHH-HHHHHhCC-------C----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CC-
Confidence 3 221 22111110 1 12222233333333332 4567888999999999999999999878854 33
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 372 GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
..+++.+.++ +..++.+.|. ++|+.++...........++|++++++
T Consensus 305 ~~~~~~~~~~-----~~~~l~~~l~----~~gi~v~~~~~~~~~~~~~iRis~~~~ 351 (367)
T 3euc_A 305 AANFLLARVP-----DAAQTFDRLL----ARKVLIKNVSKMHPLLANCLRVTVSTP 351 (367)
T ss_dssp SSSEEEEECS-----CHHHHHHHHH----TTTEECEECGGGCGGGTTEEEEECCCH
T ss_pred CCeEEEEECC-----CHHHHHHHHH----HCCeEEEECCccCCCCCCEEEEecCCH
Confidence 4566666653 4566777766 999998764221122346799998753
No 81
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.93 E-value=8.2e-25 Score=214.85 Aligned_cols=327 Identities=11% Similarity=-0.027 Sum_probs=224.4
Q ss_pred CCCccccccccCC-ChHHHHHHHHHHcCcC-CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 55 NPRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
...++|..+.+.. ++|.+.+++.+.+... ...|...++..++++.+.+++.+.+|.+.+.. ..+.+|+|+++|+.+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~~v~~t~G~~~al~~ 124 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKE--DEVCILYGTKNGLVA 124 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT--TSEEEESSHHHHHHH
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCc--ccEEEcCCcHHHHHH
Confidence 3345566666654 4567888888877542 22344445778899999999988889863210 138999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCC
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGS 212 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 212 (429)
++.++.. .+++|+++.++|.++...++..|++++.+|.+++++.+|+++|++++++++++|++++++
T Consensus 125 ~~~~l~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~ 191 (404)
T 2o1b_A 125 VPTCVIN-------------PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPN 191 (404)
T ss_dssp HHHHHCC-------------TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSC
T ss_pred HHHHhcC-------------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCC
Confidence 9888743 136899999999999999999999999999876446799999999998889999999999
Q ss_pred CccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CC---CCeeEEEEcCcccCC-CCCC
Q 014163 213 TLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RL---PLVKSINVSGHKYGL-VYAG 284 (429)
Q Consensus 213 ~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~---~~~d~~~~s~hK~~~-~p~g 284 (429)
||||.+.| +++|+++|+++ |+++++|++|+.+.. .... ..+ .. .+.+.++.+.+|+++ ++.+
T Consensus 192 nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~g~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 261 (404)
T 2o1b_A 192 NPTGSTATKEVFDEAIAKFKGT------DTKIVHDFAYGAFGF---DAKN-PSILASENGKDVAIEIYSLSKGYNMSGFR 261 (404)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTS------SCEEEEECTTTTCBS---SSCC-CCGGGSTTHHHHEEEEEESTTTTTCGGGC
T ss_pred CCCCccCCHHHHHHHHHHHHHc------CCEEEEEccchhccc---CCCC-CChhhcCCCCCCEEEEEecchhccCchhh
Confidence 99999864 78999999999 999999999987532 1111 111 11 146788899999885 6678
Q ss_pred eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Q 014163 285 VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRF 364 (429)
Q Consensus 285 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~ 364 (429)
+|+++.++ +.. +.+........ ++.+.....++..+++. +.+.+++..++..++++++.+.|++++ +
T Consensus 262 ~G~~~~~~-~~~-~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 328 (404)
T 2o1b_A 262 VGFAVGNK-DMI-QALKKYQTHTN---------AGMFGALQDAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKAD-L 328 (404)
T ss_dssp CEEEEECH-HHH-HHHHHHHHHHC---------CCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred eEeEecCH-HHH-HHHHHHHhhcc---------CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 89987643 222 22211111100 12222223333333433 255678888889999999999999884 7
Q ss_pred EEeeCCCCce-EEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 365 EILSKDVGVP-LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 365 ~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++..+ ..+ ++.++++. +.+..++.+.|.+ ++|+.+.+.......+..++|++++.
T Consensus 329 ~~~~~--~~g~~~~~~~~~--~~~~~~l~~~l~~---~~gi~v~~g~~f~~~~~~~iRis~~~ 384 (404)
T 2o1b_A 329 PFVHA--KGGIYVWLETPP--GYDSEQFEQFLVQ---EKSILVAPGKPFGENGNRYVRISLAL 384 (404)
T ss_dssp CEECC--CBSSEEEEECCT--TCCHHHHHHHHHH---HHCEECEESGGGCGGGTTEEEEECCS
T ss_pred eecCC--CcceEEEEeCCC--CCCHHHHHHHHHH---HCCEEEeCchhhCcCCCCeEEEEEcC
Confidence 76643 344 45566642 3566677776651 47999876411111234579999875
No 82
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=8.1e-25 Score=216.66 Aligned_cols=306 Identities=16% Similarity=0.074 Sum_probs=202.6
Q ss_pred cCCChHHHHHHHHHHcCcCCC----CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYV----DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~ 140 (429)
+.+++|.+.+++.+.+..... .|..++...+..+++++++++++|++. ..+++|+|+++|+.+++.++.+.
T Consensus 27 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~~ 101 (432)
T 3a9z_A 27 TTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKP-----QDIIFTSGGTESNNLVIHSTVRC 101 (432)
T ss_dssp CCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCG-----GGEEEESCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCc-----CeEEEeCChHHHHHHHHHHHHhh
Confidence 335567788887776654221 122233456777899999999999864 23899999999999999988642
Q ss_pred HHHHHHhcCCCC--------CCcEEEEcCCCchHHHHH----HHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEE
Q 014163 141 WQQKRKEQGKPY--------DKPNIVTGANVQVCWEKF----ARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAA 208 (429)
Q Consensus 141 ~~~~~~~~g~~~--------~~~~vi~~~~~h~s~~~~----~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~ 208 (429)
+......+|..+ ..+.|+++..+|.+.... ++..|++++.+|++++++.+|+++|++++++++++|++
T Consensus 102 ~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~ 181 (432)
T 3a9z_A 102 FHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTI 181 (432)
T ss_dssp HHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEC
T ss_pred hhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEE
Confidence 211000122100 114788899999986444 34469999999987534789999999999999999999
Q ss_pred eeCCCccccccChHHHHHHHHHhhhccCCC----------ccEEeecccccccccccCCCCccccCCCCeeEEEEcCccc
Q 014163 209 ILGSTLTGEFEDVKLLHDLLTKKNEETGWD----------TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKY 278 (429)
Q Consensus 209 ~~~~~~tG~~~~l~~I~~la~~~~~~~~~~----------~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~ 278 (429)
++++|+||.+.|+++|.++|+++ + +++|+|++|+.+..+ .++...++|+++.|+||+
T Consensus 182 ~~~~nptG~~~~~~~i~~l~~~~------~~~~~~~~~~~~~livDea~~~~~~~-------~~~~~~~~d~~~~s~~K~ 248 (432)
T 3a9z_A 182 MLANNETGVIMPISEISRRIKAL------NQIRAASGLPRVLVHTDAAQALGKRR-------VDVEDLGVDFLTIVGHKF 248 (432)
T ss_dssp CSBCTTTCBBCCHHHHHHHHHHH------HHHHHHHTCCCCEEEEECTTTTTTSC-------CCHHHHCCSEEEEEGGGT
T ss_pred ECcccCcccccCHHHHHHHHHhc------CcccccccCCceEEEEEchhhhCCcc-------cChhhcCCCEEEEehhHh
Confidence 99999999999999999999999 8 999999999764321 122112578999999998
Q ss_pred CCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Q 014163 279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL 358 (429)
Q Consensus 279 ~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L 358 (429)
+ +|. +|+++++++... .. ....+.++........++.+.....++.++++.+. ++++++.++..++++++.+.|
T Consensus 249 ~-g~~-~G~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~~~~~~~l~~~L 322 (432)
T 3a9z_A 249 Y-GPR-IGALYVRGVGKL-TP--LYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDIRDYLEERL 322 (432)
T ss_dssp T-CCS-CEEEEETTBTTT-BC--CCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCc-ceEEEEcccccc-CC--cCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH
Confidence 6 454 999998653211 11 11122221110001124555445555556666543 478889999999999999999
Q ss_pred HhCCCeEEe--eCC---C-CceEEEEEecCCCCCCHHHHHHHH
Q 014163 359 EKTGRFEIL--SKD---V-GVPLVAFSLKDSSAHTVFEISEGL 395 (429)
Q Consensus 359 ~~~~~~~~~--~~~---~-~~~~v~f~~~~~~~~~~~~~~~~L 395 (429)
++++++++. .+. . ..++++|.+.+. +.+..++.+.|
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 364 (432)
T 3a9z_A 323 EAEFGKRIHLNSRFPGVERLPNTCNFSIQGS-QLRGYMVLAQC 364 (432)
T ss_dssp HHHHGGGEEESSCCTTCCBCTTEEEEEECST-TCCHHHHHHHC
T ss_pred HhccCCcEEEeCCCCcccCCCCEEEEEeCCC-CCcHHHHHHHh
Confidence 986444433 321 1 234777887542 23444444433
No 83
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.93 E-value=4.7e-25 Score=215.99 Aligned_cols=315 Identities=12% Similarity=0.010 Sum_probs=215.1
Q ss_pred Ccccccccc-CC-ChHHHHHHHHHHcCcCCCCC---ccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHH
Q 014163 57 RLNLASFVT-TW-MEPECDKLVMASINKNYVDM---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (429)
Q Consensus 57 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~ 131 (429)
.++|..+.+ +. +++.+.+++.+.+......+ ....+..++.+++++++++++|.+. +++|+||++|+.
T Consensus 45 ~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------v~~~~ggt~a~~ 117 (398)
T 3a2b_A 45 VLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEA-------AILFSTGFQSNL 117 (398)
T ss_dssp EEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHH
T ss_pred EEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc-------EEEECCHHHHHH
Confidence 345555554 33 55677777777665422222 2233556778899999999999752 899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh----CCeEEE
Q 014163 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVA 207 (429)
Q Consensus 132 ~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~----~~~~v~ 207 (429)
+++.++.. .++.|+++.++|.++..+++..|++++.+|. +|+++|++++++ ++++|+
T Consensus 118 ~~~~~~~~-------------~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 118 GPLSCLMG-------------RNDYILLDERDHASIIDGSRLSFSKVIKYGH------NNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp HHHHHSSC-------------TTCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred HHHHHHhC-------------CCCEEEECCccCHHHHHHHHHcCCceEEeCC------CCHHHHHHHHHhhccCCceEEE
Confidence 99888743 2368999999999999999999999988875 589999999987 789999
Q ss_pred EeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCC-CCeeEEEEcCcccCCCCCCeE
Q 014163 208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYAGVG 286 (429)
Q Consensus 208 ~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~s~hK~~~~p~g~g 286 (429)
+++++||||.+.|+++|.++|++| ++++|+|++|+.+.............+. +++|+++.+.||+++ |.| |
T Consensus 179 ~~~~~nptG~~~~~~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G 250 (398)
T 3a2b_A 179 TDGIFSMEGDIVNLPELTSIANEF------DAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-G 250 (398)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-E
T ss_pred EeCCCCCCCCccCHHHHHHHHHHc------CcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-c
Confidence 999999999999999999999999 9999999999764321000000000121 247999999999886 667 8
Q ss_pred EEEEeCCCCcccccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Q 014163 287 WVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE 365 (429)
Q Consensus 287 ~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~ 365 (429)
+++.++ +. .+.+... ..+... ++.+.....+...+++.+ +.+++..++..++++++.+.|+++ +++
T Consensus 251 ~~~~~~-~~-~~~l~~~~~~~~~~--------~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 317 (398)
T 3a2b_A 251 FVAGDA-DV-IDFLKHNARSVMFS--------ASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFD 317 (398)
T ss_dssp EEEECH-HH-HHHHHHHCHHHHSS--------BCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred EEEeCH-HH-HHHHHHhcccceec--------CCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 888743 22 2222111 111111 222222222344555543 235677888899999999999998 477
Q ss_pred EeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCCCCCceEEEEEecc
Q 014163 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~~~~~~~lRi~~~~ 426 (429)
++. + ..+++.+.++. +.+..++.+.|. ++|+.+... .+....+..++|++++.
T Consensus 318 ~~~-~-~g~~~~~~~~~--~~~~~~l~~~l~----~~gi~v~~~~~~~~~~~~~~iRis~~~ 371 (398)
T 3a2b_A 318 LGA-T-ESPILPIFIRS--NEKTFWVTKMLQ----DDGVFVNPVVSPAVPAEESLIRFSLMA 371 (398)
T ss_dssp BCS-C-CSSEEEEECCC--HHHHHHHHHHHH----HTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred cCC-C-CCCEEEEEcCC--HHHHHHHHHHHH----HCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence 653 3 45677777632 234456666666 889998765 22111245679999974
No 84
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.93 E-value=1.6e-24 Score=212.02 Aligned_cols=332 Identities=13% Similarity=0.012 Sum_probs=225.1
Q ss_pred CCCCCccccccccCCC-hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCC-CCCCCCCCceEeCCchHHH
Q 014163 53 DGNPRLNLASFVTTWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~g~t~a~ 130 (429)
.++..++|..+.+..+ +|.+.+++.+.+. ....|....+..++++++.+++++.+|.+ .+.. ....+|+|+++|+
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~--~~i~~t~g~~~al 104 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVDAD--NEILPVLGSREAL 104 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTT--TSEEEESSHHHHH
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCC--CeEEEcCCcHHHH
Confidence 4566677777777654 5678888887775 33344445567899999999999999975 2211 1489999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEee
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL 210 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~ 210 (429)
.+++.+++.+ |.+.+++.|+++.++|.++...++..|++++.+|++++++.+|+++|++++++++++|++++
T Consensus 105 ~~~~~~~~~~--------g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~ 176 (396)
T 3jtx_A 105 FSFVQTVLNP--------VSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCS 176 (396)
T ss_dssp HHHHHHHCCC-----------CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEES
T ss_pred HHHHHHHhCC--------CCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEEC
Confidence 9998887541 10001258999999999999999999999999999765578999999999999999999999
Q ss_pred CCCccccccChH---HHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-------C-CCCeeEEEEcCcc-c
Q 014163 211 GSTLTGEFEDVK---LLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-------R-LPLVKSINVSGHK-Y 278 (429)
Q Consensus 211 ~~~~tG~~~~l~---~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-------~-~~~~d~~~~s~hK-~ 278 (429)
++||||.+.+.+ +|+++|++| ++++|+|++|+.+.. ........ . ..+.+.+..+.+| +
T Consensus 177 p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 247 (396)
T 3jtx_A 177 PNNPSGSVLDLDGWKEVFDLQDKY------GFIIASDECYSEIYF---DGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS 247 (396)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEECTTTTCCS---TTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEcccccccc---CCCCCchHHhhhhhcccccCcEEEEecccccc
Confidence 999999996655 599999999 999999999987432 11011110 0 1346777888999 5
Q ss_pred CCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Q 014163 279 GLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL 358 (429)
Q Consensus 279 ~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L 358 (429)
++++.++|+++.+. +. ...+.....+.. ++.+.....++..+++. .+.+++..++..++++++.+.|
T Consensus 248 ~~~G~r~G~~~~~~-~~-~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l 314 (396)
T 3jtx_A 248 NVPGLRSGFVAGDA-EL-LKNFLLYRTYHG---------SAMSIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPIL 314 (396)
T ss_dssp SCGGGCCEEEEECH-HH-HHHHHHHHHHHT---------CCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccceEEEEeCH-HH-HHHHHHHHhhcc---------cCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999987632 22 222211111110 12222233333333432 3557888888999999999999
Q ss_pred HhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccC-CCC-----CCCceEEEEEecc
Q 014163 359 EKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKL-PMS-----YPWSTKLRVISHL 426 (429)
Q Consensus 359 ~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~-~~~-----~~~~~~lRi~~~~ 426 (429)
++. +.+.. +....++.+.++. .+..++.+.|.+ ++|+.+.+.. ... ..+..++|++++.
T Consensus 315 ~~~--~~~~~-~~~~~~~~~~~~~---~~~~~~~~~l~~---~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~ 379 (396)
T 3jtx_A 315 QQV--FDVKL-PDASFYIWLKVPD---GDDLAFARNLWQ---KAAIQVLPGRFLARDTEQGNPGEGYVRIALVA 379 (396)
T ss_dssp TTT--SCCCC-CSSSSEEEEECTT---SCHHHHHHHHHH---HHCEECEEGGGGCCCCTTCCTTTTEEEEECCS
T ss_pred Hhc--CCccC-CCeeEEEEEECCC---CCHHHHHHHHHH---HCCEEEeCChHhCCcccccCCCCCeEEEEEcC
Confidence 876 23332 3234455566542 466777777741 5699987641 111 1345689999864
No 85
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.93 E-value=1.2e-23 Score=203.41 Aligned_cols=315 Identities=13% Similarity=0.036 Sum_probs=216.3
Q ss_pred CCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHH
Q 014163 56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (429)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al 134 (429)
..++|....+.. ++|.+.+++.+.+... ..| ..++.. ++++++++++|++. ....+|+|+++|+..++
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y-~~~~~~----~lr~~la~~~~~~~-----~~v~~~~g~t~a~~~~~ 101 (363)
T 3ffh_A 33 KITKLSSNENPLGTSKKVAAIQANSSVET-EIY-PDGWAS----SLRKEVADFYQLEE-----EELIFTAGVDELIELLT 101 (363)
T ss_dssp CCEECSSCSCTTCCCHHHHHHHHTCBSCC-CBC-----CH----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHHh-hcC-CCcchH----HHHHHHHHHhCCCh-----hhEEEeCCHHHHHHHHH
Confidence 445566665554 4577888887766432 112 223333 55566888888765 24899999999999998
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
.++.. .+++|+++.++|.++...++..|++++.+|.+++ +.+|+++|++++++++++|++++++|+
T Consensus 102 ~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~p~np 167 (363)
T 3ffh_A 102 RVLLD-------------TTTNTVMATPTFVQYRQNALIEGAEVREIPLLQD-GEHDLEGMLNAIDEKTTIVWICNPNNP 167 (363)
T ss_dssp HHHCS-------------TTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT-SCCCHHHHHHHCCTTEEEEEEESSCTT
T ss_pred HHHcc-------------CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC-CCcCHHHHHHhcccCCCEEEEeCCCCC
Confidence 88743 1368999999999999999999999999999874 789999999999999999999999999
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEEEEEeCC
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTK 293 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~ 293 (429)
||.+.|+++|.++++.+.+ |+++|+|++|+++.......... ......-+.+..+.+|+++ ++.++|++++++
T Consensus 168 tG~~~~~~~l~~l~~~~~~----~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~- 241 (363)
T 3ffh_A 168 TGNYIELADIQAFLDRVPS----DVLVVLDEAYIEYVTPQPEKHEK-LVRTYKNLIITRTFSKIYGLASARVGYGIADK- 241 (363)
T ss_dssp TCCCCCHHHHHHHHTTSCT----TSEEEEECTTGGGCSSCCCCCGG-GGGTCTTEEEEEESSSTTCCSSCCCEEEEECH-
T ss_pred cCCCcCHHHHHHHHHhCCC----CcEEEEeCchHhhcCccccCHHH-HhhcCCCEEEEeechhhhcCchhceeeeecCH-
Confidence 9999999999999997722 79999999998643200000001 1112234466667789775 667779988732
Q ss_pred CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCc
Q 014163 294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGV 373 (429)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 373 (429)
+.. +.+..... . ++.+.....++..+++ ..+.+++..++..++++++.+.|+++++++++.+ ..
T Consensus 242 ~~~-~~l~~~~~-------~----~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~--~~ 305 (363)
T 3ffh_A 242 EII-RQLNIVRP-------P----FNTTSIGQKLAIEAIK--DQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA--NG 305 (363)
T ss_dssp HHH-HHHHHTCC-------S----CCCBHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC--CS
T ss_pred HHH-HHHHHhCC-------C----CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHhhCCCceECCC--CC
Confidence 221 22111110 1 1222233333334443 3466788889999999999999999666887633 45
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 374 PLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 374 ~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+++.+.++. +..++.+.|. ++|+.++...... ...++|++++++
T Consensus 306 ~~~~~~~~~----~~~~~~~~l~----~~gi~v~~g~~~~--~~~~iRis~~~~ 349 (363)
T 3ffh_A 306 NFVLIDLGI----EAGTIFSYLE----KNGYITRSGAALG--FPTAVRITIGKE 349 (363)
T ss_dssp SEEEEECSS----CHHHHHHHHH----HTTEECEETTTTT--CTTEEEEECCCH
T ss_pred eEEEEECCC----CHHHHHHHHH----HCCeEEEeCccCC--CCCeEEEECCCH
Confidence 667777642 5667777777 8999987652221 245799998753
No 86
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=6.3e-25 Score=214.86 Aligned_cols=312 Identities=15% Similarity=0.051 Sum_probs=211.2
Q ss_pred ccccccccC--CChHHHHHHHHHHcCcCCCCCc---cChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 58 LNLASFVTT--WMEPECDKLVMASINKNYVDMD---EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 58 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
++|.+..+. .++|.+.+++.+.+......+. ...+..+...++++++++++|.+. .+++++|++|+..
T Consensus 46 id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~-------~i~~~sGt~a~~~ 118 (399)
T 3tqx_A 46 LNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD-------TILYSSCFDANGG 118 (399)
T ss_dssp EECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHT
T ss_pred EEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc-------EEEECchHHHHHH
Confidence 445555442 2356777777666654211111 112334455577788999999863 5666677999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh------CCeEE
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICV 206 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~------~~~~v 206 (429)
++.++.. .++.|+++.++|.++...++..|++++.+|. +|+++|++++++ ++++|
T Consensus 119 ~l~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~~~~v 179 (399)
T 3tqx_A 119 LFETLLG-------------PEDAIISDELNHASIIDGIRLCKAQRYRYKN------NAMGDLEAKLKEADEKGARFKLI 179 (399)
T ss_dssp THHHHCC-------------TTCEEEEETTCCHHHHHHHHSCCSEEEEECT------TCTTHHHHHHHHHHTTTCSSEEE
T ss_pred HHHHhcC-------------CCCEEEECCcccHHHHHHHHHcCCceeEeCC------CCHHHHHHHHHhhhccCCCceEE
Confidence 8877643 2368999999999999999999999988874 466788888876 79999
Q ss_pred EEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc--ccc-C-CCCeeEEEEcCcccCCCC
Q 014163 207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF-R-LPLVKSINVSGHKYGLVY 282 (429)
Q Consensus 207 ~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~-~-~~~~d~~~~s~hK~~~~p 282 (429)
++++++|+||.+.|+++|.++|++| |+++|+|++|+.+.. ..... ... + ....|+++.+.||+++++
T Consensus 180 ~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~ 250 (399)
T 3tqx_A 180 ATDGVFSMDGIIADLKSICDLADKY------NALVMVDDSHAVGFI---GENGRGTPEYCGVADRVDILTGTLGKALGGA 250 (399)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHT------TCEEEEECTTTTTTS---STTSCCHHHHHTCTTCCSEEEEESSSSSCSS
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHHc------CCEEEEECCcccccc---CCCCCchHHhhCCCCCCcEEEecchHhcccC
Confidence 9999999999999999999999999 999999999964321 11110 111 2 135799999999998756
Q ss_pred CCeEEEEEeCCCCcccccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014163 283 AGVGWVVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT 361 (429)
Q Consensus 283 ~g~g~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 361 (429)
.| |+++.++ +.. +.+... ..|.. .++.+.....+...+++.+. ++.++..++..++++++.+.|+++
T Consensus 251 ~g-G~~~~~~-~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~ 318 (399)
T 3tqx_A 251 SG-GYTSGHK-EII-EWLRNRSRPYLF--------SNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL 318 (399)
T ss_dssp CC-EEEEECH-HHH-HHHHHHCHHHHS--------SCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ce-EEEEcCH-HHH-HHHHHhCcceec--------cCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc
Confidence 66 8877643 222 222111 11111 12333333444455555433 557888999999999999999998
Q ss_pred CCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCCCCCceEEEEEec
Q 014163 362 GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMSYPWSTKLRVISH 425 (429)
Q Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~~~~~~~lRi~~~ 425 (429)
+ +++. ++ ..+++.+.++. ..+..++.+.|. ++|+.+... ++....+..++|++++
T Consensus 319 g-~~~~-~~-~~~~~~~~~~~--~~~~~~~~~~l~----~~gi~v~~~~~~~~~~~~~~iRi~~~ 374 (399)
T 3tqx_A 319 G-FQLV-PG-NHPIIPVMLGD--AQLATNMADHLL----QEGIYVVGFSYPVVPMGKARIRVQMS 374 (399)
T ss_dssp T-CCBC-CC-SSSEEEEEEEC--HHHHHHHHHHHH----HTTEECCEECTTTSCTTCEEEEEECC
T ss_pred C-CCcC-CC-CCCEEEEEeCC--HHHHHHHHHHHH----HCCCEEeeeCCCCCCCCCceEEEEee
Confidence 5 7766 33 56777787753 234456666666 899998755 3333455678999986
No 87
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=1.4e-24 Score=214.74 Aligned_cols=325 Identities=15% Similarity=0.099 Sum_probs=221.1
Q ss_pred CccccccccC---CChHHHHHHHHHHcCcC---CCCCccChhhHHHHHHHHHHHHHhhCCC-CCCCCCCCceEeCCchHH
Q 014163 57 RLNLASFVTT---WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEA 129 (429)
Q Consensus 57 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~g~t~a 129 (429)
.++|..+.+. .+++.+.+++.+.++.+ ...|....+..++++++.+++.+.+|.+ .+. ..+.+|+|+++|
T Consensus 45 ~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~---~~v~~t~G~~~a 121 (425)
T 1vp4_A 45 AISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDE---DNLIFTVGSQQA 121 (425)
T ss_dssp CEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCG---GGEEEEEHHHHH
T ss_pred ceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCc---ccEEEeccHHHH
Confidence 3456655543 24567888887777543 2345455578899999888888877954 221 248999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh--------
Q 014163 130 IMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-------- 201 (429)
Q Consensus 130 ~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-------- 201 (429)
+.+++.++.. .+++|+++.++|.++...++..|++++.+|.+++ + +|+++|++++++
T Consensus 122 l~~~~~~l~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-~-~d~~~l~~~l~~~~~~~~~~ 186 (425)
T 1vp4_A 122 LDLIGKLFLD-------------DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-G-MDLNVLERKLSEFDKNGKIK 186 (425)
T ss_dssp HHHHHHHHCC-------------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E-ECHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhCC-------------CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC-C-CCHHHHHHHHHhhhhcccCC
Confidence 9999887743 1368999999999999999999999999999765 4 999999999987
Q ss_pred CCeEE-EEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc---cCCCCeeEEEEc
Q 014163 202 NTICV-AAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD---FRLPLVKSINVS 274 (429)
Q Consensus 202 ~~~~v-~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~---~~~~~~d~~~~s 274 (429)
++++| ++++++||||.+.+ +++|+++|+++ |+++|+|++|+.+.. ....... +...+.+.+..+
T Consensus 187 ~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~~i~~~s 257 (425)
T 1vp4_A 187 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY------DLFIVEDDPYGALRY---EGETVDPIFKIGGPERVVLLNT 257 (425)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECSSTTCBC---SSCCCCCHHHHHCTTTEEEEEE
T ss_pred CceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEECCCccccC---CCCCCcCHHHhCCCCCEEEEec
Confidence 67887 47899999999865 67899999999 999999999987532 1111111 122245677889
Q ss_pred CcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHH
Q 014163 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARA 353 (429)
Q Consensus 275 ~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~~~ 353 (429)
.+|+++++.++|++++++ + +.+.+...... .+ ++.+.....++..+++... .+.+++..++..+++++
T Consensus 258 ~sK~~~~G~r~G~~~~~~-~-~~~~l~~~~~~-------~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (425)
T 1vp4_A 258 FSKVLAPGLRIGMVAGSK-E-FIRKIVQAKQS-------AD--LCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTV 326 (425)
T ss_dssp STTTTCGGGCEEEEECCH-H-HHHHHHHHHHH-------HH--SSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHH
T ss_pred cccccccccceEEEeeCH-H-HHHHHHHHhhh-------hc--CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999988667789988753 2 22222111000 00 1112222333333343322 34567777888899999
Q ss_pred HHHHHHhC-C---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc--CCCCCCCceEEEEEecc
Q 014163 354 LREGLEKT-G---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK--LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 354 l~~~L~~~-~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~~~~~~lRi~~~~ 426 (429)
+.+.|++. + +++++.+. ...++.++++. +.+..++.+.|. ++|+.+.+. +.....+..++|++++.
T Consensus 327 l~~~L~~~~~~~~g~~~~~~~-~g~~~~~~~~~--~~~~~~l~~~l~----~~gi~v~~g~~f~~~~~~~~~iRis~~~ 398 (425)
T 1vp4_A 327 MLNALEEYFSDIPGVKWVKSE-GGLFIWLTLPE--GFDTWEMFEYAK----RKKVFYVPGRVFKVYDEPSPSMRLSFCL 398 (425)
T ss_dssp HHHHHHHHSTTSTTCEECCCS-BSSEEEEECCT--TCCTTTTHHHHH----HHTEECEEGGGGCTTCCCCSEEEEECSS
T ss_pred HHHHHHHhCCCCCceEEecCC-ccEEEEEEcCC--CCCHHHHHHHHH----HCCCEEECchhhcCCCCCCCeEEEEeCC
Confidence 99999875 4 47776443 45567777643 345567777777 789998764 21111245679999875
No 88
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.93 E-value=9.8e-26 Score=218.55 Aligned_cols=315 Identities=13% Similarity=-0.040 Sum_probs=205.1
Q ss_pred ccccCCChHHHHHHHHHHcCc---CCCC-C---ccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE-eCCchHHHHHH
Q 014163 62 SFVTTWMEPECDKLVMASINK---NYVD-M---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLA 133 (429)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~t~a~~~a 133 (429)
+-.|++.++.+.+++...+.. |+.+ + ..++...++-+++++.+++++|++.+ ..++| |.|+|+++.++
T Consensus 32 ~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~----~evif~t~~~T~a~n~a 107 (386)
T 3qm2_A 32 SSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN----YKVLFCHGGGRGQFAGV 107 (386)
T ss_dssp CSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTT----EEEEEEESCTTHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCCchHHHHHH
Confidence 334455677888888765532 2211 1 12344456666889999999999642 23777 68999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEecc--CCccccCHHHHHHHhhhCCeEEEEe
Q 014163 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLE--EGYYVMNPVKAVELVDENTICVAAI 209 (429)
Q Consensus 134 l~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~--~~~~~~d~~~l~~~i~~~~~~v~~~ 209 (429)
+..+.. + ++++++...+|++ |...++..| +++.++++ +++..+|+++++++++++|++|.++
T Consensus 108 i~~l~~--------~-----gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~ 173 (386)
T 3qm2_A 108 PLNLLG--------D-----KTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYC 173 (386)
T ss_dssp HHHHCT--------T-----CCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEEC
T ss_pred HHhccC--------C-----CCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEE
Confidence 887643 1 2455544444443 455567779 89999988 4322388889999999999999999
Q ss_pred eCCCccccc-cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEE
Q 014163 210 LGSTLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWV 288 (429)
Q Consensus 210 ~~~~~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l 288 (429)
+.+|.+|.+ +|+++|+ + |+++|||++++.+..+ .|+. ..|++.+++|||+ +|.|+|++
T Consensus 174 h~et~tG~~i~pi~~i~-----~------g~~~~vDa~qs~g~~p-------idv~--~~~~~~~s~hK~l-GP~G~g~l 232 (386)
T 3qm2_A 174 PNETIDGIAIDETPDFG-----P------EVVVTADFSSTILSAP-------LDVS--RYGVIYAGAQKNI-GPAGLTLV 232 (386)
T ss_dssp SEETTTTEECCCCCCCC-----T------TCCEEEECTTTTTSSC-------CCGG--GCSEEEEETTTTT-CCTTEEEE
T ss_pred CCcCCcCEecCchhhhc-----C------CCEEEEEcccccCCCC-------CCcc--ccCEEEEeccccc-CCCccEEE
Confidence 999999996 9999986 7 9999999999865543 2332 2345679999999 59999999
Q ss_pred EEeCCCCcccccccccCCCC--CCCCCceeccCCchhHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCeE
Q 014163 289 VWRTKDDLPDELVFHINYLG--SDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRFE 365 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~~ 365 (429)
+++++. +.......+.++. .........+|++...++++.++++.+... |++++.++..++++++++.|++++-+.
T Consensus 233 ~v~~~~-~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~ 311 (386)
T 3qm2_A 233 IVREDL-LGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYR 311 (386)
T ss_dssp EEEGGG-CSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred EECHHH-HhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 998642 2111111111211 000011123688878889999999988887 899999999999999999999986223
Q ss_pred EeeCC-CC-ceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 366 ILSKD-VG-VPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 366 ~~~~~-~~-~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
...++ .+ .++++|.+++. +.+ .++...|. ++||.++.... ..+ .+|+|+++
T Consensus 312 ~~~~~~~rs~~iv~f~~~~~-~~~-~~~~~~L~----~~gI~~~~g~~--~~~--~iRiS~~~ 364 (386)
T 3qm2_A 312 NDVAQANRSRMNVPFQLADN-TLD-KVFLEESF----AAGLHALKGHR--VVG--GMRASIYN 364 (386)
T ss_dssp CCBCGGGBCSSEEEEEESSG-GGH-HHHHHHHH----HTTEECCBCCT--TTC--SEEEECCT
T ss_pred cCCCHHHcCceEEEEECCCc-ccc-HHHHHHHH----HCCCEEeCCCC--CcC--eEEEEcCC
Confidence 32222 13 46899998642 233 44555555 89998765311 122 39999865
No 89
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.93 E-value=2.4e-23 Score=201.81 Aligned_cols=308 Identities=13% Similarity=0.045 Sum_probs=216.0
Q ss_pred ccccccC-CChHHHHHHHHHHcCcC---CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 60 LASFVTT-WMEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 60 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
|....+. .++|.+.+++.+.+... ...|..... .++++.+.+++.+.+|.+.+. ....+|+|+++++..++.
T Consensus 35 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~---~~v~~~~G~~~al~~~~~ 110 (369)
T 3cq5_A 35 LNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTR---DNLWAANGSNEILQQLLQ 110 (369)
T ss_dssp CSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCG---GGEEEESHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCCh---HhEEECCChHHHHHHHHH
Confidence 3444333 34567888777766542 233433333 688999988988887765321 248899999999998888
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCc
Q 014163 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL 214 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~ 214 (429)
++.. .+++|+++.++|.++..+++..|++++.+|.+++ +.+|+++|++++++ ++++|++++++||
T Consensus 111 ~l~~-------------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~~~~~~v~~~~~~np 176 (369)
T 3cq5_A 111 AFGG-------------PGRTALGFQPSYSMHPILAKGTHTEFIAVSRGAD-FRIDMDVALEEIRAKQPDIVFVTTPNNP 176 (369)
T ss_dssp HHCS-------------TTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTT-SSCCHHHHHHHHHHHCCSEEEEESSCTT
T ss_pred HhcC-------------CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcC-CCCCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 7743 1368999999999999999999999999998754 78999999999988 8999999999999
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCC-eeEEEEcCcccCC-CCCCeEEEEEe
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPL-VKSINVSGHKYGL-VYAGVGWVVWR 291 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~-~d~~~~s~hK~~~-~p~g~g~l~~~ 291 (429)
||.+.|++++.++|+.+ ++++|+|++|+.+... ... ..+ ...+ .+.+..+.||+++ ++.++|+++++
T Consensus 177 tG~~~~~~~l~~l~~~~------~~~li~De~~~~~~~~---~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 177 TGDVTSLDDVERIINVA------PGIVIVDEAYAEFSPS---PSA-TTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp TCCCCCHHHHHHHHHHC------SSEEEEECTTGGGCCS---CCG-GGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred CCCCCCHHHHHHHHHhC------CCEEEEECCchhhcCC---cch-HHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 99999999999999999 9999999999875421 111 111 1123 5688889999885 56678999875
Q ss_pred CCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC
Q 014163 292 TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV 371 (429)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 371 (429)
+ + +.+.+..... . .+.+.....++..+++. .+.+++..++..++++++.+.|++.+ +++. ++
T Consensus 247 ~-~-~~~~l~~~~~-------~----~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~- 308 (369)
T 3cq5_A 247 P-A-FIDAVMLVRL-------P----YHLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELG-YAVV-PS- 308 (369)
T ss_dssp T-H-HHHHHHTTSC-------T----TCSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHT-CEEE-CC-
T ss_pred H-H-HHHHHHHcCC-------C----CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCC-CEEC-CC-
Confidence 3 2 2222211110 1 11222222223333332 34577888889999999999999864 8776 33
Q ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 372 GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 372 ~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
..+++.+.++ .+..++.+.|. ++|+.+... ....++|+++++
T Consensus 309 ~~~~~~~~~~----~~~~~l~~~l~----~~gi~v~~~-----~~~~~iRis~~~ 350 (369)
T 3cq5_A 309 ESNFVFFGDF----SDQHAAWQAFL----DRGVLIRDV-----GIAGHLRTTIGV 350 (369)
T ss_dssp SSSEEEEECC----SSHHHHHHHHH----HTTEECBCC-----SCTTEEEEECCC
T ss_pred CCeEEEEECC----CCHHHHHHHHH----HCCEEEEEC-----CCCCeEEEEeCC
Confidence 4667777663 35566777776 899997653 123569999874
No 90
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.93 E-value=2.2e-24 Score=207.63 Aligned_cols=305 Identities=14% Similarity=0.112 Sum_probs=207.3
Q ss_pred cccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHH
Q 014163 59 NLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK 138 (429)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~ 138 (429)
.|.+..+.+++|.+.+++.+........| +...+++++++++++++| +. ..+++|+|||+|+.+++.+++
T Consensus 11 d~~~~~~~~~~~~v~~a~~~~~~~~~~~~----~~~~~~~~l~~~la~~~g-~~-----~~v~~~~~gt~a~~~al~~~~ 80 (356)
T 1v72_A 11 GFSSDNIAGASPEVAQALVKHSSGQAGPY----GTDELTAQVKRKFCEIFE-RD-----VEVFLVPTGTAANALCLSAMT 80 (356)
T ss_dssp BCSCGGGCCCCHHHHHHHHHTTSSCCCST----TCSHHHHHHHHHHHHHHT-SC-----CEEEEESCHHHHHHHHHHTSC
T ss_pred eeccCCccCCCHHHHHHHHhhccCccccc----ccchHHHHHHHHHHHHhC-CC-----CcEEEeCCccHHHHHHHHHhc
Confidence 34444455567888888877653211112 234556688889999999 32 237899999999999888764
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH--HHhc--CceeEEEeccCCccccCHHHHHH-Hhhh-------CCeEE
Q 014163 139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF--ARYF--EVELKEVKLEEGYYVMNPVKAVE-LVDE-------NTICV 206 (429)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~--~~~~--G~~v~~v~~~~~~~~~d~~~l~~-~i~~-------~~~~v 206 (429)
. .+++|+++.++|++.... +... |++++.+|.+ ++.+|+++|++ ++++ ++++|
T Consensus 81 ~-------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~~~v 145 (356)
T 1v72_A 81 P-------------PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACV 145 (356)
T ss_dssp C-------------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred C-------------CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchhhccCCceEE
Confidence 3 136899999999987665 6777 9999988875 37899999999 9986 57889
Q ss_pred EEeeCCCcccc---ccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCC-CCeeEEEEcCcccCCCC
Q 014163 207 AAILGSTLTGE---FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVY 282 (429)
Q Consensus 207 ~~~~~~~~tG~---~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~s~hK~~~~p 282 (429)
+++++++ +|. .+++++|+++|++| |+++|+|++|+.+......... ..+.+ .++|+++++.||+ +.|
T Consensus 146 ~~~~~~~-tG~~~~~~~l~~i~~~~~~~------~~~li~D~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~-g~~ 216 (356)
T 1v72_A 146 SITQATE-VGSIYTLDEIEAIGDVCKSS------SLGLHMDGSRFANALVSLGCSP-AEMTWKAGVDALSFGATKN-GVL 216 (356)
T ss_dssp EEESSCT-TSCCCCHHHHHHHHHHHHHT------TCEEEEEETTHHHHHHHHTCCT-TTTTGGGTCCEEEECCGGG-TCS
T ss_pred EEEcCCC-CCccCCHHHHHHHHHHHHHc------CCeEEEEchhhHhHhccCCCCH-HHhhhhhcCCEEEEecccC-CCc
Confidence 9998765 999 67899999999999 9999999999754221111111 11111 2588999999999 568
Q ss_pred CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 014163 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG 362 (429)
Q Consensus 283 ~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~ 362 (429)
.|+|+++. +++.. +.+....... ++.......++..+++.+..+.+.++.++..++++++.+.|++++
T Consensus 217 ~G~g~~~~-~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 284 (356)
T 1v72_A 217 AAEAIVLF-NTSLA-TEMSYRRKRA----------GHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG 284 (356)
T ss_dssp SCEEEEES-SGGGH-HHHHHHHHHT----------TCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CccEEEEE-CHHHH-hhHHHHhhcc----------CchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88888775 33332 2211111111 110011222333445556555567778888999999999999987
Q ss_pred CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 363 RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 363 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
++++..++ ..+++.++++ .++.+.|. ++|+.+.+.. +. ..++|++++
T Consensus 285 g~~~~~~~-~~~~~~~~~~-------~~~~~~l~----~~gi~v~~g~---~~-~~~iRi~~~ 331 (356)
T 1v72_A 285 GVEVLGGT-EANILFCRLD-------SAMIDALL----KAGFGFYHDR---WG-PNVVRFVTS 331 (356)
T ss_dssp TEEEESCC-CSSEEEEEEC-------HHHHHHHH----HTTCBCBCSS---SS-TTEEEEECC
T ss_pred CcEEccCC-CccEEEEEcC-------HHHHHHHH----hcCeEEeccc---cC-CCeEEEEec
Confidence 79887554 5666666652 26666666 8999887431 21 457999875
No 91
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.92 E-value=3.1e-24 Score=206.73 Aligned_cols=299 Identities=11% Similarity=0.001 Sum_probs=207.3
Q ss_pred CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHH
Q 014163 66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (429)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~ 145 (429)
.+++|.+.+++.+.+.. |....+..++++++++++++++|.+. ..+.+|+||++|+..++.+++.
T Consensus 24 ~~~~~~v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~-----~~v~~~~g~t~a~~~~~~~~~~------ 88 (359)
T 1svv_A 24 VGMHPKILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPD-----ADVHFISGGTQTNLIACSLALR------ 88 (359)
T ss_dssp SCCCHHHHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTT-----SEEEEESCHHHHHHHHHHHHCC------
T ss_pred CCCCHHHHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCC-----ccEEEeCCchHHHHHHHHHHhC------
Confidence 35567788888888763 23334556788899999999999764 2488999999999999998754
Q ss_pred HhcCCCCCCcEEEEcCCCchHHHH--HHHhcCceeEEEeccCCccccCHHHHHHHhhhC-------CeEEEEeeCCCccc
Q 014163 146 KEQGKPYDKPNIVTGANVQVCWEK--FARYFEVELKEVKLEEGYYVMNPVKAVELVDEN-------TICVAAILGSTLTG 216 (429)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s~~~--~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~-------~~~v~~~~~~~~tG 216 (429)
.+++|++++++|+++.. .++..|++++.+|.+ ++.+|+++|+++++++ +++|+++++ |+||
T Consensus 89 -------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG 158 (359)
T 1svv_A 89 -------PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVG 158 (359)
T ss_dssp -------TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTS
T ss_pred -------CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCc
Confidence 13689999999999877 478889999999986 3789999999999886 788989988 6899
Q ss_pred cccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCC-CCeeEEEEcCcccCCCCCCeEEEEEeC
Q 014163 217 EFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYAGVGWVVWRT 292 (429)
Q Consensus 217 ~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~s~hK~~~~p~g~g~l~~~~ 292 (429)
.+.| +++|.++|++| |+++|+|++|.++.......... .+.+ ...|++++++||++ .|.|+|++++++
T Consensus 159 ~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~-~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~ 230 (359)
T 1svv_A 159 TQYTKQELEDISASCKEH------GLYLFLDGARLASALSSPVNDLT-LADIARLTDMFYIGATKAG-GMFGEALIILND 230 (359)
T ss_dssp CCCCHHHHHHHHHHHHHH------TCEEEEECTTHHHHHTSTTCCCC-HHHHHHHCSEEEEECTTTT-CSSCEEEEECSG
T ss_pred eecCHHHHHHHHHHHHHh------CCEEEEEccchhhhhcCCCcchh-hhhhhhcCCEEEEecccCC-CCCceEEEEEcc
Confidence 9987 99999999999 99999999995542211110100 0010 24799999999985 578889887743
Q ss_pred CCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCC
Q 014163 293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG 372 (429)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 372 (429)
+.. +.+...... .+.. .+.. .....+. ...+...++++..++..++++++.+.| +.++++++.+. .
T Consensus 231 -~~~-~~~~~~~~~-~~~~------~~~~-~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~-~ 296 (359)
T 1svv_A 231 -ALK-PNARHLIKQ-RGAL------MAKG-WLLGIQF--EVLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPS-A 296 (359)
T ss_dssp -GGC-TTHHHHHHH-TTCC------CTTT-HHHHHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCC-S
T ss_pred -cHH-HHHHHHHhc-CCcc------cccc-hhhHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCC-c
Confidence 222 222111000 1100 0001 1111222 223555667888999999999999999 56678776543 4
Q ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEec
Q 014163 373 VPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.+++.+.++ .++.+.|. ++ |+.+.. . ...+...+|++++
T Consensus 297 ~~~~~~~~~-------~~~~~~l~----~~~gi~v~~-~--~~~~~~~iRi~~~ 336 (359)
T 1svv_A 297 SNQLFPILE-------NTMIAELN----NDFDMYTVE-P--LKDGTCIMRLCTS 336 (359)
T ss_dssp SSEECBEEE-------HHHHHHHT----TTEECEEEE-E--ETTTEEEEEEECC
T ss_pred cceEEEEcC-------HHHHHHHH----HhcCEEEEe-c--ccCCCceEEEEcc
Confidence 556555542 35666666 88 998721 1 1135678999875
No 92
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.92 E-value=1.2e-23 Score=205.15 Aligned_cols=297 Identities=10% Similarity=0.017 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHHHHHHHh
Q 014163 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE 147 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~~~~~~~ 147 (429)
.+.+.+++.+.+..+...+...+...+++ +.+++++|.+. .+++++||+|+.+++.++ ..
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~----~~la~~~~~~~-------~i~~~sGt~al~~~l~~l~~~-------- 76 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNSFE----REFAAHHGAAH-------ALAVTNGTHALELALQVMGVG-------- 76 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHH----HHHHHHTTCSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHH----HHHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence 36788888887765422333445555555 45788888763 445555699999998886 22
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHH
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l 227 (429)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|++|.+.|+++|.++
T Consensus 77 -----~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l 148 (388)
T 1b9h_A 77 -----PGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKI 148 (388)
T ss_dssp -----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHH
T ss_pred -----CcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHH
Confidence 1368999999999999999999999999999865588999999999988887765 88999999999999999
Q ss_pred HHHhhhccCCCccEEeecccccccccccCCCCccccC-CCCeeEEEEcCcccCCCCCCeEEEEEeCCCCc-ccccccccC
Q 014163 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL-PDELVFHIN 305 (429)
Q Consensus 228 a~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~-~~~~~~~~~ 305 (429)
|+++ |+++|+|++|+.+... .. .+++ ...+++++++.||++.++ +.|+++.+++... ...+.....
T Consensus 149 a~~~------~~~li~D~a~~~g~~~--~~---~~~~~~~~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~ 216 (388)
T 1b9h_A 149 SADT------GVPLLQDAAHAHGARW--QG---KRVGELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHS 216 (388)
T ss_dssp HHHH------TCCBCEECTTCTTCEE--TT---EEGGGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTB
T ss_pred HHHc------CCEEEEecchhcCCcc--CC---eecccccceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHh
Confidence 9999 9999999999854321 11 1121 124889999999998665 5688877654320 121111111
Q ss_pred CCCCC-CCCc--eeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC-----CCceEEE
Q 014163 306 YLGSD-QPTF--TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD-----VGVPLVA 377 (429)
Q Consensus 306 ~~~~~-~~~~--~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~~~~v~ 377 (429)
+.... ...+ ...|+......+..++.+.. .+.+++..++..++++++.+.|++++++++..++ ...+++.
T Consensus 217 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 217 CGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp TTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEE
T ss_pred CCCCccCccceeecccccCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEE
Confidence 10000 0000 00122111122222222222 2446777888889999999999999878877531 1246778
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhccCceecccC
Q 014163 378 FSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKL 410 (429)
Q Consensus 378 f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~ 410 (429)
|++++..+.+..++.+.|. ++||.++.++
T Consensus 295 ~~~~~~~~~~~~~l~~~L~----~~gI~v~~~~ 323 (388)
T 1b9h_A 295 FRIPGLTEERRNALVDRLV----EAGLPAFAAF 323 (388)
T ss_dssp EECTTCCHHHHHHHHHHHH----HTTCCEEECC
T ss_pred EEeCCcCcccHHHHHHHHH----HCCCCccccc
Confidence 8875311123455666666 8999987653
No 93
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.92 E-value=2.3e-24 Score=211.02 Aligned_cols=315 Identities=13% Similarity=0.004 Sum_probs=211.2
Q ss_pred ccccccccCC---ChHHHHHHHHHHcCcC---CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHH
Q 014163 58 LNLASFVTTW---MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (429)
Q Consensus 58 ~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~ 131 (429)
++|..+.+.. +++.+.+++.+.+... ...|...++..++++. +++++|++. ..+.+|+|+++|+.
T Consensus 35 i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~----la~~~g~~~-----~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 35 LSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAF----VAEWIGVRP-----EEVLITTGSQQALD 105 (397)
T ss_dssp EEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHH----HHHHHTSCG-----GGEEEESHHHHHHH
T ss_pred eecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHH----HHHHhCCCh-----hhEEEeccHHHHHH
Confidence 4555554432 4566888877766542 1334444466666655 556667654 24889999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEE-EEe
Q 014163 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICV-AAI 209 (429)
Q Consensus 132 ~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v-~~~ 209 (429)
+++.++.. .+++|+++.++|.++...++..|++++.+|.+++ + +|+++|++++++ ++++| +++
T Consensus 106 ~~~~~~~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~-~d~~~l~~~l~~~~~~~v~~~~ 170 (397)
T 2zyj_A 106 LVGKVFLD-------------EGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE-G-PDLDALEEVLKRERPRFLYLIP 170 (397)
T ss_dssp HHHHHHCC-------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT-E-ECHHHHHHHHHHCCCSCEEECC
T ss_pred HHHHHhCC-------------CCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC-C-CCHHHHHHHHhhcCCeEEEECC
Confidence 98888743 1368999999999999999999999999998764 4 999999999987 78877 468
Q ss_pred eCCCccccccCh---HHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc---CCC---CeeEEEEcCcccCC
Q 014163 210 LGSTLTGEFEDV---KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF---RLP---LVKSINVSGHKYGL 280 (429)
Q Consensus 210 ~~~~~tG~~~~l---~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~---~~~---~~d~~~~s~hK~~~ 280 (429)
+++||||.+.+. ++|+++|++| |+++|+|++|+.+.. .......+ ... .-+.+..+.||+++
T Consensus 171 ~~~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (397)
T 2zyj_A 171 SFQNPTGGLTPLPARKRLLQMVMER------GLVVVEDDAYRELYF---GEARLPSLFELAREAGYPGVIYLGSFSKVLS 241 (397)
T ss_dssp BSCTTTCCBCCHHHHHHHHHHHHHH------TCCEEEECTTTTCBC---SSCCCCCHHHHHHHHTCCCEEEEEESTTTTC
T ss_pred CCcCCCCCcCCHHHHHHHHHHHHHc------CCEEEEeCCcccccC---CCCCCCchhhhCcccCCCeEEEEeccccccc
Confidence 999999998765 4899999999 999999999987532 11111111 111 23477789999988
Q ss_pred CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHH
Q 014163 281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF---EGYKNIMENCMGNARALREG 357 (429)
Q Consensus 281 ~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~---~g~~~~~~~~~~~~~~l~~~ 357 (429)
++.++|++++++ + +.+.+....... +. ++ ..+.+.++...+.. +.+++..++..++++++.+.
T Consensus 242 ~G~r~G~~~~~~-~-~~~~l~~~~~~~-------~~-~~----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (397)
T 2zyj_A 242 PGLRVAFAVAHP-E-ALQKLVQAKQGA-------DL-HT----PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA 307 (397)
T ss_dssp GGGCCEEEECCH-H-HHHHHHHHHHHH-------HS-SC----CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEecCH-H-HHHHHHHHHHhh-------cC-CC----CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 667899988753 2 222221111000 00 11 12233333433332 44677778888999999999
Q ss_pred HHh-CC-CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc--CCCCCCCceEEEEEecc
Q 014163 358 LEK-TG-RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK--LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 358 L~~-~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~~~~~~lRi~~~~ 426 (429)
|++ +| ++++..+. ...++.++++. +.+..++.+.|. ++|+.+.+. +.....+..++|++++.
T Consensus 308 L~~~~~~g~~~~~~~-~g~~~~~~~~~--~~~~~~~~~~l~----~~gi~v~~g~~f~~~~~~~~~iRis~~~ 373 (397)
T 2zyj_A 308 LDREVPKEVRYTRPK-GGMFVWMELPK--GLSAEGLFRRAL----EENVAFVPGGPFFANGGGENTLRLSYAT 373 (397)
T ss_dssp HHHHSCTTSEECCCS-BSSEEEEECST--TCCHHHHHHHHH----HTTEEEEESGGGCTTSCCTTEEEEECSS
T ss_pred HHHHCCCCeEEccCC-ccEEEEEEcCC--CCCHHHHHHHHH----HCCCEEechHHhcCCCCCCCeEEEEcCC
Confidence 987 46 48876543 45566677643 456677777777 889998764 21111245679999875
No 94
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.92 E-value=5.8e-24 Score=206.27 Aligned_cols=296 Identities=11% Similarity=0.007 Sum_probs=198.0
Q ss_pred CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHH
Q 014163 66 TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (429)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~ 145 (429)
.+++|.+.+++.+.+..... ...+... ++++.+++++|.+. +++|+||++|+.+++.+++...
T Consensus 9 ~~~~~~v~~a~~~~~~~~~~--~~~~~~~----~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~~~~~~---- 71 (375)
T 2fnu_A 9 PCLDKEDKKAVLEVLNSKQL--TQGKRSL----LFEEALCEFLGVKH-------ALVFNSATSALLTLYRNFSEFS---- 71 (375)
T ss_dssp CCCCHHHHHHHHHHHTSSCC--SSSHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHSSCCC----
T ss_pred CCCCHHHHHHHHHHHHcCcc--cCChHHH----HHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHhcccC----
Confidence 34567788888888765432 2233333 55566888888862 8999999999999998872100
Q ss_pred HhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHH
Q 014163 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLH 225 (429)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~ 225 (429)
. .+++|+++.++|+++..+++..|++++.++++++ +.+|+++|++++++++++|+++++ +|.+.|+++|.
T Consensus 72 -~-----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~ 141 (375)
T 2fnu_A 72 -A-----DRNEIITTPISFVATANMLLESGYTPVFAGIKND-GNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQ 141 (375)
T ss_dssp -T-----TSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT-SSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHH
T ss_pred -C-----CCCEEEECCCccHhHHHHHHHCCCEEEEeccCCC-CCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHH
Confidence 0 2368999999999999999999999999999875 589999999999988888877776 89999999999
Q ss_pred HHHHHhhhccCCCccEEeecccccccccccCCCCccccC-CCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccccc
Q 014163 226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI 304 (429)
Q Consensus 226 ~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~ 304 (429)
++|+++ |+++|+|++|+.+..+ .. . .++ ...++++++++||++ ++ |+|++++++...+.+.+....
T Consensus 142 ~l~~~~------~~~li~D~a~~~~~~~--~~--~-~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~ 208 (375)
T 2fnu_A 142 KLCKKH------SLSFLSDSSHALGSEY--QN--K-KVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFR 208 (375)
T ss_dssp HHHHHH------TCEEEEECTTCTTCEE--TT--E-ETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHT
T ss_pred HHHHHc------CCEEEEECccccCCeE--CC--e-eccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHH
Confidence 999999 9999999999865431 11 0 111 124888889999988 45 788888854222212111111
Q ss_pred CCCCC-C-CCCce--eccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC----CCceEE
Q 014163 305 NYLGS-D-QPTFT--LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD----VGVPLV 376 (429)
Q Consensus 305 ~~~~~-~-~~~~~--~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~v 376 (429)
..... . ...+. ..+.+.....+....++. ..+++++..++..++++++.+.|++++++++..++ ....++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2fnu_A 209 SHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS--QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLY 286 (375)
T ss_dssp BTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCE
T ss_pred hcCCccccccccccccccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEE
Confidence 10000 0 00000 001110112222222222 24567888999999999999999999878887542 122344
Q ss_pred EEEecCCCCC-CHHHHHHHHHHHHhccCceecc
Q 014163 377 AFSLKDSSAH-TVFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 377 ~f~~~~~~~~-~~~~~~~~L~~~l~~~G~~~~~ 408 (429)
.+.++.. +. +..++.+.|. ++|+.++.
T Consensus 287 ~~~~~~~-~~~~~~~l~~~L~----~~gi~v~~ 314 (375)
T 2fnu_A 287 PILMHQK-FFTCKKLILESLH----KRGILAQV 314 (375)
T ss_dssp EEEECGG-GGGGHHHHHHHHH----HTTEECBC
T ss_pred EEEeCcc-ccchHHHHHHHHH----HCCCCccc
Confidence 5565421 23 4566777776 89999874
No 95
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.92 E-value=9.5e-24 Score=210.38 Aligned_cols=317 Identities=14% Similarity=0.086 Sum_probs=197.1
Q ss_pred cCCChHHHHHHHHHHcCcCCC-CC------ccChhhHHHHHHHHHHHHHhhCCCCCCCCCC-CceEeCCchHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYV-DM------DEYPVTTELQNRCVNMIAHLFNTPVADDKTA-VGVGTVGSSEAIMLAGLA 136 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~le~~~~~~la~l~g~~~~~~~~~-~~~~t~g~t~a~~~al~a 136 (429)
+.+++|.+.+++...+.+.+. .+ ...+...++|+.+++++++++|.+.+. . ..+++++||+||..++.+
T Consensus 63 ~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~---~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 63 ENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQ---WGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTT---EEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCccc---CceEEeCCchHHHHHHHHHH
Confidence 335678899998877654321 11 122344689989999999999998521 1 145666899999999988
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCCchHHH--------HHHHhcCceeEEEe--ccCCccccCHHHHHHHhhh-CCeE
Q 014163 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE--------KFARYFEVELKEVK--LEEGYYVMNPVKAVELVDE-NTIC 205 (429)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~--------~~~~~~G~~v~~v~--~~~~~~~~d~~~l~~~i~~-~~~~ 205 (429)
+.+ .+++|+++++.|.++. ..+...|..++.++ ++++++.+|+++|++++.+ +|++
T Consensus 140 l~~-------------pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~kl 206 (490)
T 2a7v_A 140 LLQ-------------PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRL 206 (490)
T ss_dssp HCC-------------SCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSE
T ss_pred HcC-------------CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcE
Confidence 754 2368998888775421 13345666554444 4544589999999999974 7887
Q ss_pred EEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCe
Q 014163 206 VAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV 285 (429)
Q Consensus 206 v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~ 285 (429)
|+++.+++ |...|+++|+++|++| |+++|+|+||+.+... .+.....+ .++|++++++||++.+|.|
T Consensus 207 Ii~~~s~~--~~~~dl~~i~~ia~~~------g~~livD~Ah~~glv~--~g~~~~~~--~~aDiv~~S~hK~l~Gp~G- 273 (490)
T 2a7v_A 207 IIAGTSAY--ARLIDYARMREVCDEV------KAHLLADMAHISGLVA--AKVIPSPF--KHADIVTTTTHKTLRGARS- 273 (490)
T ss_dssp EEECCSSC--CSCCCHHHHHHHHHHT------TCEEEEECGGGHHHHH--TTSSCCGG--GTCSEEEEESSGGGCSCSC-
T ss_pred EEEcCCCC--CCcccHHHHHHHHHHc------CCEEEEcccccccccc--CCcCCCCC--CCCCEEEECCcccCccccc-
Confidence 77665555 4567899999999999 9999999998654321 11111112 3689999999999887766
Q ss_pred EEEEEeCCC-------------CcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Q 014163 286 GWVVWRTKD-------------DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNAR 352 (429)
Q Consensus 286 g~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~ 352 (429)
|+++.++.. .+.+.+.. ..+. ..+|++....+.++.+++.....+.++++.++..++++
T Consensus 274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~-------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~ 345 (490)
T 2a7v_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINF-AVFP-------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNAR 345 (490)
T ss_dssp EEEEEECSEEEEETTTEEEEECCCHHHHHH-HHTT-------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred hheeeccchhcccccccchhhHHHHHHHHH-Hhcc-------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888877531 01111100 0011 11245544455566666655433456888899999999
Q ss_pred HHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCC--CCCceEEEEEe
Q 014163 353 ALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMS--YPWSTKLRVIS 424 (429)
Q Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~--~~~~~~lRi~~ 424 (429)
+|.+.|.+.+ ++++......+++.+.+.+. +++..++.+.|. +.||.+... .|.. ......||+++
T Consensus 346 ~L~~~L~~~G-~~v~~~~t~t~lv~vdl~~~-g~~~~~~~~~L~----~~GI~v~~~~~p~d~~p~~~~~iRig~ 414 (490)
T 2a7v_A 346 AMADALLERG-YSLVSGGTDNHLVLVDLRPK-GLDGARAERVLE----LVSITANKNTCPGDRSAITPGGLRLGA 414 (490)
T ss_dssp HHHHHHHHTT-CEEGGGSCSSSEEEEECTTT-TCCHHHHHHHHH----HTTEECEEECCTTCCCSSSCSEEEEES
T ss_pred HHHHHHHHcC-cEEecCCCCCeEEEEEeCCC-CCCHHHHHHHHH----hCCeEEecCccCCCCCCCCCCceEecc
Confidence 9999999985 98875433567787877543 567777777777 899998753 2221 12235699965
No 96
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=7.4e-24 Score=206.26 Aligned_cols=291 Identities=10% Similarity=0.044 Sum_probs=203.9
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH--H
Q 014163 90 YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC--W 167 (429)
Q Consensus 90 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s--~ 167 (429)
++...++.+++++++++++|.+. ...+|+|||+|+..++..+ . .+++|+++.+.|++ +
T Consensus 30 ~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~sgt~a~~~~~~~~-~-------------~gd~vi~~~~~~~~~~~ 89 (379)
T 3ke3_A 30 SKAFQEVMNDLLSNLKTVYNAEA------AVIIPGSGTYGMEAVARQL-T-------------IDEDCLIIRNGWFSYRW 89 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSE------EEEEESCHHHHHHHHHHHH-C-------------TTCEEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC------EEEEcCChhHHHHHHHHhC-C-------------CCCeEEEEeCCchhHHH
Confidence 56677888899999999999872 3788999999999876433 1 13689888888876 3
Q ss_pred HHHHHhcCc--eeEEEeccCC-------c-cccCHHHHHHHhh-hCCeEEEEeeCCCccccccC---hHHHHHHHHHhhh
Q 014163 168 EKFARYFEV--ELKEVKLEEG-------Y-YVMNPVKAVELVD-ENTICVAAILGSTLTGEFED---VKLLHDLLTKKNE 233 (429)
Q Consensus 168 ~~~~~~~G~--~v~~v~~~~~-------~-~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~ 233 (429)
...++..|+ +++.++.+.. . ..+|+++++++++ .++++|++++++|++|.+.| +++|+++|++|
T Consensus 90 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-- 167 (379)
T 3ke3_A 90 TQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-- 167 (379)
T ss_dssp HHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT--
T ss_pred HHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc--
Confidence 445666664 6777876431 1 2589999999996 48999999999999999999 99999999999
Q ss_pred ccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccc--ccCCCCC--
Q 014163 234 ETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF--HINYLGS-- 309 (429)
Q Consensus 234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~--~~~~~~~-- 309 (429)
|+++|+|++++ +..+ .++...++|++++++||++++|.|+|+++++++ .. +.+.. ...+...
T Consensus 168 ----~~~li~D~~~~-g~~~-------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~-~~-~~l~~~~~~~~~~~~~ 233 (379)
T 3ke3_A 168 ----GGLLVIDCIAS-GCVW-------LDMKELGIDVLISAPQKGWSSTPCAGLVMLSAA-AI-KKVESTESNCFSLDLK 233 (379)
T ss_dssp ----TCEEEEECTTC-TTCC-------CCHHHHTCSEEEECTTTTTCSCCCEEEEEECHH-HH-HHHHTCCCSCSTTCHH
T ss_pred ----CCEEEEEeccc-CCcc-------ccccccCCCEEEecchhhcCCCCceEEEEECHH-HH-HhhhcCCCCceeecHH
Confidence 99999999998 4321 122122689999999999999999999988643 11 11111 0111110
Q ss_pred ---------CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC-Cce-EEEE
Q 014163 310 ---------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV-GVP-LVAF 378 (429)
Q Consensus 310 ---------~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~-~v~f 378 (429)
......+.+|.+...+.++.++++.+..+|++++.++..++++++++.|++++ ++++.++. ..+ ++.+
T Consensus 234 ~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~~ 312 (379)
T 3ke3_A 234 QWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKG-IESVAAEGFEAPGVVVS 312 (379)
T ss_dssp HHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCBCSSEEEE
T ss_pred HHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CEecCCccccCceEEEE
Confidence 00000112477766777788888888778899999999999999999999985 87765532 234 4444
Q ss_pred EecCCCCCCHHHHHHHHHHHHhccCceecccCCCCC---CCceEEEEEec
Q 014163 379 SLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSY---PWSTKLRVISH 425 (429)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~---~~~~~lRi~~~ 425 (429)
...+. ...+.+.|. ++|+.+....+... .....+|++++
T Consensus 313 ~~~~~----~~~~~~~L~----~~Gi~v~~g~~~~~~~~~~~~~lRis~~ 354 (379)
T 3ke3_A 313 YTERD----DMHKGSAFA----EAGLQIAAGVPLKVGEPDNFKTFRLGLF 354 (379)
T ss_dssp ECSCH----HHHSSHHHH----HTTCCCEECCCCSSCCCTTCCEEEEECC
T ss_pred ccCCc----chHHHHHHH----HCCeEEeCCccccccccCcCCEEEEeCC
Confidence 43211 111244555 89998876432221 22467999985
No 97
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.92 E-value=1.6e-23 Score=203.47 Aligned_cols=320 Identities=12% Similarity=0.013 Sum_probs=217.2
Q ss_pred CCCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHH
Q 014163 53 DGNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIM 131 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~ 131 (429)
++ ..++|..+.+.. ++|.+.+++.+.+. ....|....+..++++++.+++++.+|.+.+. ....+|+|+++|+.
T Consensus 22 ~g-~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~---~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFETPKFIQDALKNHTH-SLNIYPKSAFEESLRAAQRGFFKRRFKIELKE---NELISTLGSREVLF 96 (376)
T ss_dssp SS-CCCBCSSCCCCSCCCHHHHHHHHTTGG-GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCG---GGEEEESSSHHHHH
T ss_pred cC-CEEEeCCCCCCCCCCHHHHHHHHHhhh-hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH---HHEEECcCcHHHHH
Confidence 44 556777777765 35678888877662 33344445567899999999999999984321 34899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeC
Q 014163 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILG 211 (429)
Q Consensus 132 ~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 211 (429)
+++.++.. + .+++.|+++.++|.++...++..|++++.+|.+++ ..+++ +|++++.+++++|+++++
T Consensus 97 ~~~~~~~~--------~---~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~-~l~~~~~~~~~~v~~~~p 163 (376)
T 3ezs_A 97 NFPSFVLF--------D---YQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE-NDFTP-SLNEKELQEVDLVILNSP 163 (376)
T ss_dssp HHHHHHTT--------T---CSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG-GTSCC-CCCHHHHHHCSEEEECSS
T ss_pred HHHHHHcC--------C---CCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC-CCcch-hHHhhhccCCCEEEEcCC
Confidence 99988754 1 01368999999999999999999999999998754 23555 777888888999999999
Q ss_pred CCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcc-cc-C-----CCCeeEEEEcCcccC-C
Q 014163 212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DF-R-----LPLVKSINVSGHKYG-L 280 (429)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~-~-----~~~~d~~~~s~hK~~-~ 280 (429)
+||||.+.+ +++|+++|++| |+++|+|++|+.+.. ....... .. . ..+.+.+..+.+|++ +
T Consensus 164 ~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 235 (376)
T 3ezs_A 164 NNPTGRTLSLEELISWVKLALKH------DFILINDECYSEIYE--NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSA 235 (376)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBS--SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTC
T ss_pred CCCcCCCCCHHHHHHHHHHHHHc------CcEEEEEccchhhcc--CCCCCCHHHccccccccccCcEEEEecchhccCC
Confidence 999999966 67788889999 999999999987432 1111110 00 0 235678888999988 4
Q ss_pred CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 014163 281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (429)
Q Consensus 281 ~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~ 360 (429)
++.++|+++.+. + +.+.+.....+.. ++.+.....++..+++. .+.+++..++..++++++.+.|+
T Consensus 236 ~G~r~G~~~~~~-~-~~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~- 301 (376)
T 3ezs_A 236 PGLRSGFIAGDS-R-LLEKYKAFRAYLG---------YTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK- 301 (376)
T ss_dssp GGGCCEEEEECH-H-HHHHHHHHHTTTC---------CCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST-
T ss_pred ccceeEEEeeCH-H-HHHHHHHHHhhhc---------CCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc-
Confidence 778899987632 2 2222211111111 12222333333344432 34467888888999999999987
Q ss_pred CCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhc-cCceeccc--CCCCCCCceEEEEEecc
Q 014163 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR-FQVVYPQK--LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~-~G~~~~~~--~~~~~~~~~~lRi~~~~ 426 (429)
++. .+....++.+.++ +..++.+.|. + +|+.+.+. +.....+..++|++++.
T Consensus 302 --~~~---~~~~~~~~~~~~~-----~~~~~~~~l~----~~~gi~v~~g~~~~~~~~~~~~iRis~~~ 356 (376)
T 3ezs_A 302 --NTL---IYPYSFYVYLPVQ-----NGENFAKTLY----QNEGIITLPALYLGRNRIGADYVRLALVY 356 (376)
T ss_dssp --TCC---CCSBSSEEEEECS-----CHHHHHHHHH----HHHCCBCEEGGGGCSTTTTTTEEEEECCS
T ss_pred --CCC---CCCcceEEEEECC-----CHHHHHHHHH----HhCCEEEeCcHHhCCCCCCCCeEEEEEcC
Confidence 344 2324455555653 4567777776 6 89998764 11112345679999864
No 98
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.92 E-value=7e-24 Score=208.34 Aligned_cols=331 Identities=9% Similarity=0.019 Sum_probs=224.7
Q ss_pred CCccccccccCC-ChHHHHHHHHHHcCcC-CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHH
Q 014163 56 PRLNLASFVTTW-MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (429)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~a 133 (429)
..++|+.+.+++ ++|.+.+++.+.+... ...|....+..++++++.+++.+.+|.+.+.. ..+.+|+|+++|+..+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~ 101 (410)
T 3e2y_A 24 SVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPN--EEILVAVGAYGSLFNS 101 (410)
T ss_dssp TSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTT--TSEEEESHHHHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCC--CCEEEeCCcHHHHHHH
Confidence 445677777764 4577888888887653 22444445678999999999999888765321 2489999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC----------CccccCHHHHHHHhhhCC
Q 014163 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE----------GYYVMNPVKAVELVDENT 203 (429)
Q Consensus 134 l~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~----------~~~~~d~~~l~~~i~~~~ 203 (429)
+.++.. .++.|+++.++|..+...++..|++++.+|++. .++.+|+++|++++++++
T Consensus 102 ~~~~~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~ 168 (410)
T 3e2y_A 102 IQGLVD-------------PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKT 168 (410)
T ss_dssp HHHHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTE
T ss_pred HHHhcC-------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCc
Confidence 888743 136899999999999999999999999999762 346799999999999899
Q ss_pred eEEEEeeCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc----CCCCeeEEEEcCc
Q 014163 204 ICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF----RLPLVKSINVSGH 276 (429)
Q Consensus 204 ~~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~----~~~~~d~~~~s~h 276 (429)
++|++++++||||.+ +++++|+++|++| |+++|+|++|+++.. .......+ .....+.+..+.+
T Consensus 169 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~S~s 239 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYTRQELQVIADLCVKH------DTLCISDEVYEWLVY---TGHTHVKIATLPGMWERTITIGSAG 239 (410)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC---TTCCCCCGGGSTTCGGGEEEEEEHH
T ss_pred eEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc------CcEEEEEhhhhhccc---CCCCCCCHHHcCCccCeEEEEecch
Confidence 999999999999999 6799999999999 999999999986432 11111111 1113457777888
Q ss_pred ccCC-CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHH------cCHHHHHHHHHHHHH
Q 014163 277 KYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR------LGFEGYKNIMENCMG 349 (429)
Q Consensus 277 K~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~------l~~~g~~~~~~~~~~ 349 (429)
|.++ ++.++|+++.+++ +.+.+........ ++.+.....++..+++. ...+.+++..++..+
T Consensus 240 K~~g~~G~r~G~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 308 (410)
T 3e2y_A 240 KTFSVTGWKLGWSIGPAH--LIKHLQTVQQNSF---------YTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEV 308 (410)
T ss_dssp HHSSCGGGCCEEEECCHH--HHHHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHH
T ss_pred hhcCCCCceEEEEEECHH--HHHHHHHHHHhhc---------cCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 9775 7788999876432 2122111111100 11222233333344432 124557888889999
Q ss_pred HHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCC-CCCC--------HHHHHHHHHHHHhccCceecccCCCCC-----C
Q 014163 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDS-SAHT--------VFEISEGLRKKLNRFQVVYPQKLPMSY-----P 415 (429)
Q Consensus 350 ~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~--------~~~~~~~L~~~l~~~G~~~~~~~~~~~-----~ 415 (429)
+++++.+.|++++ +++..+. ...++.+.+... ...+ ..++...|. .++|+.+.+...... .
T Consensus 309 ~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll---~~~gv~v~~g~~f~~~~~~~~ 383 (410)
T 3e2y_A 309 KRDRMVRLLNSVG-LKPIVPD-GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMT---KHKKLTAIPVSAFCDSKSKPH 383 (410)
T ss_dssp HHHHHHHHHHTTT-CEEEBCS-BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHH---HHHSEECEEGGGGSCTTTHHH
T ss_pred HHHHHHHHHHHCC-CeecCCC-ccEEEEEEchhhhcccccccccccCHHHHHHHHH---HHcCEEEeCchhhCCCCCCCC
Confidence 9999999999984 8876543 444555555431 1111 235555443 267999876411111 1
Q ss_pred CceEEEEEecc
Q 014163 416 WSTKLRVISHL 426 (429)
Q Consensus 416 ~~~~lRi~~~~ 426 (429)
+..++|++++.
T Consensus 384 ~~~~iRis~~~ 394 (410)
T 3e2y_A 384 FEKLVRFCFIK 394 (410)
T ss_dssp HTTEEEEECCC
T ss_pred CCCEEEEEEcC
Confidence 34679999865
No 99
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.92 E-value=5e-24 Score=209.08 Aligned_cols=336 Identities=15% Similarity=0.081 Sum_probs=220.3
Q ss_pred HHHHHHHHHhhccCCCCCccccccccCCChHHHHHHHHHHcCcC-CCCCc------cChhhHHHHHHHHHHHHHhhCCCC
Q 014163 40 EAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKN-YVDMD------EYPVTTELQNRCVNMIAHLFNTPV 112 (429)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~le~~~~~~la~l~g~~~ 112 (429)
.++++.+.+..... ...+++....+.. +|.+.+++.+.+... ...|. ..+....+|+.+++++++++|.+.
T Consensus 9 ~~i~~~~~~~~~~~-~~~i~~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~ 86 (407)
T 2dkj_A 9 EALFELIALEEKRQ-REGLELIASENFV-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW 86 (407)
T ss_dssp HHHHHHHHHHHHHH-HTSEECCTTCCCC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHh-hcceeeccCCCCC-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc
Confidence 34555555544321 2334444444433 677888888777531 11111 223333667667789999999874
Q ss_pred CCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHH---HHHHHhcCceeEEEec--cCCc
Q 014163 113 ADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCW---EKFARYFEVELKEVKL--EEGY 187 (429)
Q Consensus 113 ~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~---~~~~~~~G~~v~~v~~--~~~~ 187 (429)
. .+++++|++|+..++.++.. .+++|+++.++|.++ ..+++..|..++.+++ ++++
T Consensus 87 ~------~i~~~sGt~a~~~~~~~~~~-------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (407)
T 2dkj_A 87 A------NVQPHSGSQANMAVYMALME-------------PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDT 147 (407)
T ss_dssp E------ECCCSSHHHHHHHHHHHHCC-------------TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTT
T ss_pred c------eEEecchHHHHHHHHHHhcC-------------CCCEEEEecccccCccchHHHHHhcCceEEEEecCCCccc
Confidence 1 34455567899988888743 236899999999877 4566677776555555 4334
Q ss_pred cccCHHHHHHHhhh-CCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCC
Q 014163 188 YVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLP 266 (429)
Q Consensus 188 ~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~ 266 (429)
+.+|+++|++++++ ++++|+++.++|+ .+.|+++|.++|++| |+++|+|++|+.+... .+... . ...
T Consensus 148 ~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~--~~~~~-~-~~~ 215 (407)
T 2dkj_A 148 ELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEV------GAYLVVDMAHFAGLVA--AGLHP-N-PLP 215 (407)
T ss_dssp SSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHH------TCEEEEECTTTHHHHH--TTCSC-C-CTT
T ss_pred CccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHc------CCEEEEEccccccccc--cCccC-C-ccc
Confidence 78999999999985 8898888778776 778999999999999 9999999999874321 11111 1 112
Q ss_pred CeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHH
Q 014163 267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME 345 (429)
Q Consensus 267 ~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~ 345 (429)
..|+++.+.||++.++.+ |++++++++.. +.+.... .+. .++.+.....++.++++.+..+++++..+
T Consensus 216 ~~di~~~s~sK~l~g~~~-G~~~~~~~~~~-~~l~~~~~~~~---------~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 284 (407)
T 2dkj_A 216 YAHVVTSTTHKTLRGPRG-GLILSNDPELG-KRIDKLIFPGI---------QGGPLEHVIAGKAVAFFEALQPEFKEYSR 284 (407)
T ss_dssp TCSEEEEESSGGGCCCSC-EEEEESCHHHH-HHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred cccEEEEeccccCCCCCc-eEEEECCHHHH-HHHHhhhcccc---------cCCCcHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 479999999998876665 99887633322 2221111 111 12333333445556666544467889999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCC----CCCCceEEE
Q 014163 346 NCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPM----SYPWSTKLR 421 (429)
Q Consensus 346 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~----~~~~~~~lR 421 (429)
+..++++++.+.|+++ +++++.++...+++++.++.. +.+..++.+.|. ++|+.+.....+ .......+|
T Consensus 285 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~gi~v~~~~~~~~~~~~~~~~~iR 358 (407)
T 2dkj_A 285 LVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPK-GLTGKEAEERLD----AVGITVNKNAIPFDPKPPRVTSGIR 358 (407)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG-TCCHHHHHHHHH----HTTEECEECCCTTCSSCTTTCSEEE
T ss_pred HHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECccc-CCCHHHHHHHHH----HcCceecCCcCccccccccCCCcee
Confidence 9999999999999998 588876433567888887532 346667777776 899998765211 111235699
Q ss_pred EEec
Q 014163 422 VISH 425 (429)
Q Consensus 422 i~~~ 425 (429)
++++
T Consensus 359 is~~ 362 (407)
T 2dkj_A 359 IGTP 362 (407)
T ss_dssp EECH
T ss_pred eecc
Confidence 9984
No 100
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.92 E-value=3.9e-23 Score=199.95 Aligned_cols=310 Identities=10% Similarity=0.037 Sum_probs=210.0
Q ss_pred CCccccccccC-CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHH
Q 014163 56 PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (429)
Q Consensus 56 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al 134 (429)
..++|..+.+. .++|.+.+++.+.+.. ...|. .++..+++ +.+++++|++. ....+|+|+++++.+++
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~-~~~~~~l~----~~la~~~~~~~-----~~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDC-IERYP-DADYFHLH----QALARHHQVPA-----SWILAGNGETESIFTVA 93 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSCC-CTTCHHHH----HHHHHHHTSCG-----GGEEEESSHHHHHHHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHH-hhcCC-CCCHHHHH----HHHHHHHCcCH-----HHEEECCCHHHHHHHHH
Confidence 34445555443 2457788888877654 22232 23445444 45777778764 24899999999999988
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEeeCCC
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGST 213 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~ 213 (429)
.++ . +++|+++.++|.++...++..|++++.+|.++ +++.+ ++++.+.+++++++|++++++|
T Consensus 94 ~~~-~--------------gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~n 157 (364)
T 1lc5_A 94 SGL-K--------------PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNN 157 (364)
T ss_dssp HHH-C--------------CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCT
T ss_pred HHc-C--------------CCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCC
Confidence 877 2 15899999999999999999999999999874 22333 5666666777889999999999
Q ss_pred ccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCC-CCCCeEEE
Q 014163 214 LTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWV 288 (429)
Q Consensus 214 ~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~-~p~g~g~l 288 (429)
|||.+.| +++|+++|++| |+++|+|++|+.+... ....... ...+.+.+..+.+|+++ ++.++|++
T Consensus 158 ptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 228 (364)
T 1lc5_A 158 PTGLLPERPLLQAIADRCKSL------NINLILDEAFIDFIPH---ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYL 228 (364)
T ss_dssp TTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGSTT---CCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEE
T ss_pred CCCCCCCHHHHHHHHHHhhhc------CcEEEEECcChhhccC---ccchhhHhccCCCEEEEEECchhhcCCccceEEE
Confidence 9999987 89999999999 9999999999875421 1111111 22346888899999986 56678998
Q ss_pred EEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Q 014163 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 367 (429)
++.+++.. +.+..... . ++. ..+.++++...+. .+.+++..++..++++++.+.|+++|++++.
T Consensus 229 ~~~~~~~~-~~l~~~~~-------~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 293 (364)
T 1lc5_A 229 VNSDDAAM-ARMRRQQM-------P----WSV---NALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY 293 (364)
T ss_dssp ECCCHHHH-HHHHHHSC-------T----TCS---CHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC
T ss_pred EECCHHHH-HHHHHhCC-------C----CCC---CHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC
Confidence 72333222 22211110 1 122 2334445555443 3557788888899999999999999778875
Q ss_pred eCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 368 SKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++ ..+++.+.++. +..++.+.|. ++|+.+.........+..++|+++++
T Consensus 294 -~~-~g~~~~~~~~~----~~~~l~~~l~----~~gi~v~~g~~~~~~~~~~iRis~~~ 342 (364)
T 1lc5_A 294 -PG-RANYLLLRCER----EDIDLQRRLL----TQRILIRSCANYPGLDSRYYRVAIRS 342 (364)
T ss_dssp -CC-SSSEEEEEESC----TTCCHHHHHH----TTTEECEECTTSTTCCTTEEEEECCC
T ss_pred -CC-CCeEEEEECCC----cHHHHHHHHH----HCCcEEeeCcccCCCCCCEEEEEeCC
Confidence 33 45667777642 2345667777 89999876521111235679999875
No 101
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.92 E-value=9.9e-24 Score=203.91 Aligned_cols=309 Identities=13% Similarity=0.035 Sum_probs=207.9
Q ss_pred cCCChHHHHHHHHHHcCcCCC-------CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYV-------DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF 137 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~ 137 (429)
|.++++.+.+++..++..... ....++...++.+++++++++++|++.+. ....+|+|+|+|+..++.++
T Consensus 12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~t~g~t~a~~~~~~~l 88 (362)
T 2c0r_A 12 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGY---KVLFIQGGASTQFAMIPMNF 88 (362)
T ss_dssp SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSE---EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCc---EEEEECCCchHHHHHHHHhc
Confidence 445677888988887753210 11135666778889999999999996420 11357789999999998887
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcCCCchH--HHHHHHhcCceeEEEeccC--C-ccccCHHHHHHHhhhCCeEEEEeeCC
Q 014163 138 KRKWQQKRKEQGKPYDKPNIVTGANVQVC--WEKFARYFEVELKEVKLEE--G-YYVMNPVKAVELVDENTICVAAILGS 212 (429)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s--~~~~~~~~G~~v~~v~~~~--~-~~~~d~~~l~~~i~~~~~~v~~~~~~ 212 (429)
.+ .+++|+++.+.|++ +...++..| +++.++++. + +..+|.++++ ++++|++|++++++
T Consensus 89 ~~-------------~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~ 152 (362)
T 2c0r_A 89 LK-------------EGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNE 152 (362)
T ss_dssp CC-------------TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEE
T ss_pred CC-------------CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCc
Confidence 53 12578777666665 446777889 999999862 1 1235666554 67789999999999
Q ss_pred Cccccc-cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEe
Q 014163 213 TLTGEF-EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291 (429)
Q Consensus 213 ~~tG~~-~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~ 291 (429)
|+||.+ .|+++| + |+++|+|++|+.+..+ .++ ...|+++.++||+++ |.|+|+++++
T Consensus 153 n~tG~~~~~l~~i------~------~~~vivD~a~~~~~~~-------~~~--~~~d~~~~s~~K~~g-~~G~G~l~~~ 210 (362)
T 2c0r_A 153 TIEGAQFKAFPDT------G------SVPLIGDMSSDILSRP-------FDL--NQFGLVYAGAQKNLG-PSGVTVVIVR 210 (362)
T ss_dssp TTTTEECSSCCCC------T------TSCEEEECTTTTTSSC-------CCG--GGCSEEEEETTTTTC-CSSCEEEEEE
T ss_pred Cccceeccccccc------C------CCEEEEEChhhccCCc-------cch--hHCcEEEEecccccc-CcCcEEEEEc
Confidence 999995 888887 8 9999999999864321 122 124899999999984 8899999987
Q ss_pred CCCCcccccccccCCCCCC---CCCceeccCCchhHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCe-EE
Q 014163 292 TKDDLPDELVFHINYLGSD---QPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRF-EI 366 (429)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~-~~ 366 (429)
++ .. +.+.....+.... .......+|.+.....++.++++.+... +++++.++..++++++.+.|++++++ ++
T Consensus 211 ~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 288 (362)
T 2c0r_A 211 ED-LV-AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG 288 (362)
T ss_dssp GG-GS-SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE
T ss_pred HH-HH-hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 53 22 2221110111000 0000112566656667777777766555 78999999999999999999998755 77
Q ss_pred eeCC--CCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 367 LSKD--VGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 367 ~~~~--~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
..++ ...++++|.+++ +.+..++.+.|. ++|+.+....+. . ..+|+|++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~----~~gi~~~~g~~~--~--~~iRis~~~ 340 (362)
T 2c0r_A 289 CVDVDSRSDMNITFRLAS--EELEKEFVKASE----QEGFVGLKGHRS--V--GGLRASIYN 340 (362)
T ss_dssp SSCGGGBCSSEEEEECSC--HHHHHHHHHHHH----HTTEESCBCCTT--T--CSEEEECCT
T ss_pred CCChHHcCCcEEEEEcCC--cchHHHHHHHHH----HCCCeeccCCCC--C--CEEEEECCC
Confidence 5432 134567787642 234556666666 899976543221 2 349999973
No 102
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.92 E-value=1.8e-23 Score=202.98 Aligned_cols=301 Identities=12% Similarity=0.031 Sum_probs=203.8
Q ss_pred HHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhh-CCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 014163 75 LVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD 153 (429)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~ 153 (429)
.+.+.+......|...++..+++++ +++++ +++. ..+.+|+||++|+..++.++.. .
T Consensus 47 ~~~~~~~~~~~~y~~~~g~~~l~~~----la~~~~~~~~-----~~v~~~~g~~~a~~~~~~~l~~-------------~ 104 (375)
T 3op7_A 47 DFYKKLQGTKLNYGWIEGSPAFKKS----VSQLYTGVKP-----EQILQTNGATGANLLVLYSLIE-------------P 104 (375)
T ss_dssp HHHHHHHTSCCSSCCTTCCHHHHHH----HHTTSSSCCG-----GGEEEESHHHHHHHHHHHHHCC-------------T
T ss_pred HHHHHHhcCCcCCCCCCChHHHHHH----HHHHhccCCh-----hhEEEcCChHHHHHHHHHHhcC-------------C
Confidence 4444554555556666677777766 55655 3443 2489999999999999988754 2
Q ss_pred CcEEEEcCCCchHHHHHHHhcCceeEEEecc-CCccccCHHHHHHHhhhCCeEEEEeeCCCccccccC---hHHHHHHHH
Q 014163 154 KPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLT 229 (429)
Q Consensus 154 ~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~la~ 229 (429)
+++|+++.++|.++...++..|++++.+|++ ++++.+|+++|++++++++++|++++++||+|.+.| +++|.++|+
T Consensus 105 gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~ 184 (375)
T 3op7_A 105 GDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIAS 184 (375)
T ss_dssp TCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999987 334779999999999999999999999999999999 999999999
Q ss_pred HhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEEEEEeCCCCcccccccccCCCC
Q 014163 230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLG 308 (429)
Q Consensus 230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~ 308 (429)
+| |+++|+|++|+.+... + ........+.+.+..+.+|.++ ++.++|+++. +++ +.+.+.....+..
T Consensus 185 ~~------~~~li~De~~~~~~~~---~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~-l~~~~~~~~~~~~ 252 (375)
T 3op7_A 185 EV------GAYILSDEVYRSFSEL---D-VPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAA-NHQ-VTDILRDYRDYTM 252 (375)
T ss_dssp TT------TCEEEEECCSCCCSSS---C-CCCHHHHCTTEEEEEESSSSSSCGGGCCEEEEC-CHH-HHHHHTTTGGGTT
T ss_pred Hc------CCEEEEEccccccccc---C-CCchhhhcCCEEEEeEChhhcCCcccceEEEEe-CHH-HHHHHHHHHhhhc
Confidence 99 9999999999874321 1 1101111234567778889875 6678899886 332 2222211111110
Q ss_pred CCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCH
Q 014163 309 SDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTV 388 (429)
Q Consensus 309 ~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~ 388 (429)
.+.+.........+++. ....+++..++..++++++.+.|++.+++.+..+. ....+.+.+.. +.+.
T Consensus 253 ---------~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~--~~~~ 319 (375)
T 3op7_A 253 ---------ICAGVFDDLVAQLALAH-YQEILERNRHILEENLAILDQWIEEEPLVSYIRPA-VVSTSFVKIAV--DMPM 319 (375)
T ss_dssp ---------SCCCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS-SSSCEEEEECC--SSCH
T ss_pred ---------cCCCcHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC-CeEEEeEEcCC--CCCH
Confidence 11112223333334432 12345666777788999999999998888876543 33334444432 4566
Q ss_pred HHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 389 FEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 389 ~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
.++.+.|. .++|+.+.+... +....++|++++..
T Consensus 320 ~~~~~~ll---~~~gi~v~~g~~--~~~~~~iRi~~~~~ 353 (375)
T 3op7_A 320 EDFCLQLL---QEHGVLLVPGNR--FERDGYVRLGFACE 353 (375)
T ss_dssp HHHHHHHH---HHHCEECEEGGG--GTCTTEEEECCCSC
T ss_pred HHHHHHHH---HhCCEEEeChhh--hCCCCeEEEEecCC
Confidence 77776663 178999875411 11245799998653
No 103
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.92 E-value=7.4e-24 Score=207.03 Aligned_cols=293 Identities=10% Similarity=0.035 Sum_probs=196.7
Q ss_pred HHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 014163 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ 148 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~~~~~~~~ 148 (429)
+.+.+++...+..+... ...+...+++ +.+++++|.+. +++++|||+|+.+++.++ ..
T Consensus 36 ~~~~~a~~~~~~~~~~~-~~~~~~~~l~----~~la~~~~~~~-------~i~~~~gt~al~~~l~~~~~~--------- 94 (391)
T 3dr4_A 36 GNERDYVLECMDTTWIS-SVGRFIVEFE----KAFADYCGVKH-------AIACNNGTTALHLALVAMGIG--------- 94 (391)
T ss_dssp SSHHHHHHHHHHHTCCS-SCSHHHHHHH----HHHHHHHTCSE-------EEEESSHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHHHHHHcCCcc-CCChHHHHHH----HHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence 55666666666554321 1345555555 45788888863 889999999999998887 32
Q ss_pred CCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHH
Q 014163 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 228 (429)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la 228 (429)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|++|.+.|+++|.++|
T Consensus 95 ----~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~ 167 (391)
T 3dr4_A 95 ----PGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVA 167 (391)
T ss_dssp ----TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred ----CcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHH
Confidence 2368999999999999999999999999999855589999999999998888776 567999999999999999
Q ss_pred HHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCC
Q 014163 229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLG 308 (429)
Q Consensus 229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~ 308 (429)
+++ |+++|+|++|+.+.. ..+.... ....+++++++.||++.++ ..|+++.+++. +.+.+.....+..
T Consensus 168 ~~~------~~~li~D~a~~~g~~--~~~~~~~--~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~-~~~~~~~~~~~g~ 235 (391)
T 3dr4_A 168 RRH------NLLVIEDAAEAVGAT--YRGKKSG--SLGDCATFSFFGNAIITTG-EGGMITTNDDD-LAAKMRLLRGQGM 235 (391)
T ss_dssp HHT------TCEEEEECTTCTTCE--ETTEETT--SSSSEEEEECBTTSSSCCB-SCEEEEESCHH-HHHHHHHHHBTTC
T ss_pred HHc------CCEEEEECcccccce--ECCeeec--ccCCEEEEECCCCCcCCcC-CeEEEEECCHH-HHHHHHHHHhcCC
Confidence 999 999999999985432 1111000 1124788888899999663 45666665432 2111111111100
Q ss_pred C--CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeC--CC----CceEEEEEe
Q 014163 309 S--DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK--DV----GVPLVAFSL 380 (429)
Q Consensus 309 ~--~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~----~~~~v~f~~ 380 (429)
. ........+... ....+.+++.....+++++..++.+++++++.+.|+++ ++++..+ +. ...++.+.+
T Consensus 236 ~~~~~~~~~~~g~~~--~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~ 312 (391)
T 3dr4_A 236 DPNRRYWFPIVGFNY--RMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRL 312 (391)
T ss_dssp CTTSTTCCSSCCCBC--BCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEE
T ss_pred CCCCccccccccccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEE
Confidence 0 000000011111 11123333333334677888999999999999999998 5777654 21 223466666
Q ss_pred cCCCCCCHHHHHHHHHHHHhccCceeccc
Q 014163 381 KDSSAHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 381 ~~~~~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
++..+.+..++.+.|. ++||.++.+
T Consensus 313 ~~~~~~~~~~l~~~L~----~~GI~v~~~ 337 (391)
T 3dr4_A 313 GEGLSTTRDQVIKDLD----ALGIESRPV 337 (391)
T ss_dssp CSSCSSCHHHHHHHHH----HTTCCCEEC
T ss_pred CCccchhHHHHHHHHH----HCCCceeec
Confidence 5422467778888887 899988754
No 104
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.92 E-value=5.3e-24 Score=210.11 Aligned_cols=331 Identities=11% Similarity=0.028 Sum_probs=226.2
Q ss_pred CCccccccccCC-ChHHHHHHHHHHcCcCC--CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 56 PRLNLASFVTTW-MEPECDKLVMASINKNY--VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
..++|+.+.+.+ ++|.+.+++.+.+.... ..|....+..++++++.+++.+.+|.+.+.. ..+.+|+|+++|+..
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~--~~i~~~~g~~~a~~~ 106 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPL--RNVLVTVGGYGALFT 106 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHH--HHEEEESHHHHHHHH
T ss_pred CceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--CcEEEECChHHHHHH
Confidence 446677777765 45678888887776533 3455555778999999999999999764320 138899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-----------CccccCHHHHHHHhhh
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-----------GYYVMNPVKAVELVDE 201 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-----------~~~~~d~~~l~~~i~~ 201 (429)
++.++.. .++.|+++.++|.++...++..|++++.+|+++ +++.+|+++|++++++
T Consensus 107 ~~~~~~~-------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~ 173 (422)
T 3fvs_A 107 AFQALVD-------------EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS 173 (422)
T ss_dssp HHHHHCC-------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT
T ss_pred HHHHHcC-------------CCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC
Confidence 9888743 136899999999999999999999999999875 2467999999999999
Q ss_pred CCeEEEEeeCCCcccccc---ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc---cC-CCCeeEEEEc
Q 014163 202 NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD---FR-LPLVKSINVS 274 (429)
Q Consensus 202 ~~~~v~~~~~~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~---~~-~~~~d~~~~s 274 (429)
++++|++++++||||.+. ++++|+++|++| |+++|+|++|+++.. ....... +. ..+.+.+..+
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~S 244 (422)
T 3fvs_A 174 RTKALVLNTPNNPLGKVFSREELELVASLCQQH------DVVCITDEVYQWMVY---DGHQHISIASLPGMWERTLTIGS 244 (422)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC---TTCCCCCGGGSTTTGGGEEEEEE
T ss_pred CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc------CcEEEEEccchhhcc---CCCCCCChhhcccccCcEEEEec
Confidence 999999999999999997 699999999999 999999999987432 1111111 11 1135677778
Q ss_pred CcccCC-CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHH------cCHHHHHHHHHHH
Q 014163 275 GHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR------LGFEGYKNIMENC 347 (429)
Q Consensus 275 ~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~------l~~~g~~~~~~~~ 347 (429)
.+|.++ ++.++|+++.+++ +.+.+........ ++.+.....++..+++. ...+.+++..++.
T Consensus 245 ~sK~~g~~G~r~G~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (422)
T 3fvs_A 245 AGKTFSATGWKVGWVLGPDH--IMKHLRTVHQNSV---------FHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAM 313 (422)
T ss_dssp HHHHHTCGGGCCEEEECCHH--HHHHHHHHHHTTT---------CCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHH
T ss_pred chhccCCccceEEEEEeCHH--HHHHHHHHHhhcc---------CCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHH
Confidence 889875 6788999876432 2122111111000 11222233333344432 1235578888999
Q ss_pred HHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCC-CCC----------HHHHHHHHHHHHhccCceecccCCCC---
Q 014163 348 MGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS-AHT----------VFEISEGLRKKLNRFQVVYPQKLPMS--- 413 (429)
Q Consensus 348 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~-~~~----------~~~~~~~L~~~l~~~G~~~~~~~~~~--- 413 (429)
.++++++.+.|++++ ++++.+. ...++.+.+.... ... ..++...|. .++|+.+.+.....
T Consensus 314 ~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll---~~~gv~v~~g~~f~~~~ 388 (422)
T 3fvs_A 314 QRCRDHMIRSLQSVG-LKPIIPQ-GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMI---KNKGLVAIPVSIFYSVP 388 (422)
T ss_dssp HHHHHHHHHHHHTTT-CEEEBCS-BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHH---HHHCEECEEGGGGSCHH
T ss_pred HHHHHHHHHHHHHcC-CeecCCC-eeeEEEEechhhcccccccccccccccHHHHHHHHH---HhcCEEEeCcHHhcCCc
Confidence 999999999999984 8876553 4455555553200 000 345666544 26799887641110
Q ss_pred --CCCceEEEEEecc
Q 014163 414 --YPWSTKLRVISHL 426 (429)
Q Consensus 414 --~~~~~~lRi~~~~ 426 (429)
..+..++|++++.
T Consensus 389 ~~~~~~~~iRis~~~ 403 (422)
T 3fvs_A 389 HQKHFDHYIRFCFVK 403 (422)
T ss_dssp HHTTSCSEEEEECCC
T ss_pred CCCCCCCeEEEEecC
Confidence 1346789999865
No 105
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.92 E-value=5.1e-23 Score=198.63 Aligned_cols=271 Identities=14% Similarity=0.067 Sum_probs=192.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCC-cEEEEcCCCchHHHHHHHhcCce
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDK-PNIVTGANVQVCWEKFARYFEVE 177 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~-~~vi~~~~~h~s~~~~~~~~G~~ 177 (429)
++++.+++++|++. ....+|+|+++++..++.++.+ .+ ++|+++.++|..+..+++..|++
T Consensus 62 ~lr~~la~~~~~~~-----~~v~~~~G~~~ai~~~~~~~~~-------------~g~d~Vl~~~p~~~~~~~~~~~~g~~ 123 (356)
T 1fg7_A 62 AVIENYAQYAGVKP-----EQVLVSRGADEGIELLIRAFCE-------------PGKDAILYCPPTYGMYSVSAETIGVE 123 (356)
T ss_dssp HHHHHHHHHHTSCG-----GGEEEESHHHHHHHHHHHHHCC-------------TTTCEEEECSSSCTHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCCh-----HHEEEcCCHHHHHHHHHHHHhC-------------CCCCEEEEeCCChHHHHHHHHHcCCE
Confidence 44455778888864 2489999999999999888753 13 58999999999999999999999
Q ss_pred eEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHH--hhhccCCCccEEeeccccccccccc
Q 014163 178 LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFIAPFL 255 (429)
Q Consensus 178 v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (429)
++.+|.+++ +.+|+++|+++++ ++++|++++++||||.+.|.++|.++++. + ++++++|++|+.+..
T Consensus 124 ~~~v~~~~~-~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~------~~~li~De~~~~~~~--- 192 (356)
T 1fg7_A 124 CRTVPTLDN-WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG------KAIVVADEAYIEFCP--- 192 (356)
T ss_dssp EEECCCCTT-SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT------TCEEEEECTTGGGSG---
T ss_pred EEEeeCCCC-CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC------CCEEEEEccchhhcC---
Confidence 999998754 7899999999998 88999999999999999776655555444 8 999999999987531
Q ss_pred CCCCcccc-CCCCeeEEEEcCcccCC-CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHH
Q 014163 256 YPDLEWDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333 (429)
Q Consensus 256 ~~~~~~~~-~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~ 333 (429)
.... ..+ .....+.+..+.+|+++ ++.++|++++++ +.. +.+..... .+ + ...+++.+++.
T Consensus 193 ~~~~-~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-~~~-~~l~~~~~-------~~----~---~~~~~~~a~~~ 255 (356)
T 1fg7_A 193 QASL-AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANE-EVI-NLLMKVIA-------PY----P---LSTPVADIAAQ 255 (356)
T ss_dssp GGCS-GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECH-HHH-HHHHHHSC-------SS----C---SCHHHHHHHHH
T ss_pred CCcH-HHHHhhCCCEEEEecchHhhcCchhhhEEEEeCH-HHH-HHHHHhcC-------CC----C---CCHHHHHHHHH
Confidence 0110 111 11235777888999875 677899988743 222 22211110 11 1 23345666666
Q ss_pred HcCHHH---HHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecc-c
Q 014163 334 RLGFEG---YKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQ-K 409 (429)
Q Consensus 334 ~l~~~g---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~-~ 409 (429)
.+...+ +++..++..++++++.+.|++++++..+.+. ..+++.++++ +..++.+.|. ++|+.++. .
T Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~-----~~~~l~~~L~----~~gI~v~~~g 325 (356)
T 1fg7_A 256 ALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS-ETNYILARFK-----ASSAVFKSLW----DQGIILRDQN 325 (356)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC-SSSEEEEEET-----THHHHHHHHH----HTTEECEECT
T ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC-CCeEEEEECC-----CHHHHHHHHH----HCCEEEEECC
Confidence 676554 6778888899999999999998864333343 5667777763 3456777776 89999886 3
Q ss_pred CCCCCCCceEEEEEeccc
Q 014163 410 LPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 410 ~~~~~~~~~~lRi~~~~~ 427 (429)
..... ..++|++++++
T Consensus 326 ~~~~~--~~~iRis~~~~ 341 (356)
T 1fg7_A 326 KQPSL--SGCLRITVGTR 341 (356)
T ss_dssp TSTTC--TTEEEEECCCH
T ss_pred CCCCC--CCeEEEEeCCH
Confidence 22222 24799998753
No 106
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.92 E-value=9.6e-24 Score=206.81 Aligned_cols=317 Identities=15% Similarity=0.088 Sum_probs=208.7
Q ss_pred CCCCccccccccCC--ChHHHHHHHHHHcCcCCCCCccCh---hhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 54 GNPRLNLASFVTTW--MEPECDKLVMASINKNYVDMDEYP---VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 54 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
++..++|.++.+.. ++|.+.+++.+.++.....+..+. +......++++.+++++|.+. .+++++|++
T Consensus 44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGs~ 116 (401)
T 1fc4_A 44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED-------AILYSSCFD 116 (401)
T ss_dssp SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE-------EEEESCHHH
T ss_pred CccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCc-------EEEeCChHH
Confidence 34444555554433 367788887777654211111111 113444567777888899862 566677799
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh------C
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE------N 202 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~------~ 202 (429)
|+..++.++.. .++.|+++.++|.++..+++..|++++.+|. +|+++|++++++ +
T Consensus 117 a~~~~~~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 117 ANGGLFETLLG-------------AEDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp HHHTTHHHHCC-------------TTCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC-------------CCCEEEEcchhHHHHHHHHHHcCCceEEECC------CCHHHHHHHHHHhhccCCC
Confidence 99988777643 1358999999999988889999999888762 578999999876 7
Q ss_pred CeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccc-cccccccCCCCccccCC-CCeeEEEEcCcccCC
Q 014163 203 TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG-GFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGL 280 (429)
Q Consensus 203 ~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~-~~~~~~~~~~~~~~~~~-~~~d~~~~s~hK~~~ 280 (429)
+++|++++++|++|.+.|+++|.++|+++ ++++|+|++|+ ++..+ ........+++ .+.|+++.+.||+++
T Consensus 178 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~------~~~li~De~~~~g~~~~-~g~~~~~~~~~~~~~di~~~s~sK~~~ 250 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIANLKGVCDLADKY------DALVMVDDSHAVGFVGE-NGRGSHEYCDVMGRVDIITGTLGKALG 250 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHT------TEEEEEECTTTTTTSST-TSCCHHHHTTCTTCCSEEEEESSSTTC
T ss_pred ceEEEEeCCcCCCCCCCCHHHHHHHHHHc------CCEEEEECcccccccCC-CCCccHHHcCCCcCCcEEEecchhhcc
Confidence 89999999999999999999999999999 99999999996 53210 00000000111 257999999999986
Q ss_pred CCCCeEEEEEeCCCCccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q 014163 281 VYAGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (429)
Q Consensus 281 ~p~g~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~ 359 (429)
++.| |+++.++ +.. +.+.... .+. ..++.+.....++..+++.+. ..++..++..++++++.+.|+
T Consensus 251 ~~~g-G~~~~~~-~~~-~~l~~~~~~~~--------~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~ 317 (401)
T 1fc4_A 251 GASG-GYTAARK-EVV-EWLRQRSRPYL--------FSNSLAPAIVAASIKVLEMVE--AGSELRDRLWANARQFREQMS 317 (401)
T ss_dssp SSSC-EEEEECH-HHH-HHHHHHCHHHH--------HSCCCCHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-EEEEcCH-HHH-HHHHHhCcCce--------eCCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHH
Confidence 6776 8888743 222 2221111 111 112333334444444554432 136778888999999999999
Q ss_pred hCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCCCCCceEEEEEec
Q 014163 360 KTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMSYPWSTKLRVISH 425 (429)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~~~~~~~lRi~~~ 425 (429)
+++ ++++ + ...+++.+.+++ ..+..++.+.|. ++|+.+... .+....+...+|++++
T Consensus 318 ~~g-~~~~-~-~~~~~~~~~~~~--~~~~~~l~~~l~----~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 318 AAG-FTLA-G-ADHAIIPVMLGD--AVVAQKFARELQ----KEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HTT-CCBC-C-SSSSEEEEEEEC--HHHHHHHHHHHH----HTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HcC-Cccc-C-CCCCEEEEEcCC--hHHHHHHHHHHH----HCCcEEeeecCCCCCCCCceEEEEeC
Confidence 984 7766 3 356788888743 233455666666 889998765 2222234578999987
No 107
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.92 E-value=2.3e-23 Score=204.18 Aligned_cols=309 Identities=12% Similarity=0.063 Sum_probs=208.0
Q ss_pred hHHHHHHHHHHcCcCC-CC------CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHH
Q 014163 69 EPECDKLVMASINKNY-VD------MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~-~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~ 141 (429)
+|.+.+++.+.+.... .. +...+...++++++++++++++|.+. ..+++++|++|+.+++.++..
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~------~~i~~~sGt~a~~~a~~~~~~-- 107 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH------ANVQPHSGAQANMAVYFTVLE-- 107 (405)
T ss_dssp CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc------eEEEecCcHHHHHHHHHHhcC--
Confidence 6778888887774321 11 22335677888889999999999874 134444559999999888743
Q ss_pred HHHHHhcCCCCCCcEEEEcCCCchHHHH-H--HHhcCc--eeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCcc
Q 014163 142 QQKRKEQGKPYDKPNIVTGANVQVCWEK-F--ARYFEV--ELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLT 215 (429)
Q Consensus 142 ~~~~~~~g~~~~~~~vi~~~~~h~s~~~-~--~~~~G~--~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t 215 (429)
.+++|+++.++|.++.. . +...|. ++..++++++++.+|+++|++++++ ++++|++ .+++ .
T Consensus 108 -----------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~-~ 174 (405)
T 2vi8_A 108 -----------HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVA-AAAA-Y 174 (405)
T ss_dssp -----------TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSS-C
T ss_pred -----------CCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEE-eCCC-C
Confidence 23689999999987643 1 134454 6666776534478999999999987 8887776 3333 4
Q ss_pred ccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCC
Q 014163 216 GEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (429)
Q Consensus 216 G~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~ 295 (429)
|...++++|.++|++| |+++|+|++|+.+.... +... ..+...|+++.+.||++++|.| |++++++ +
T Consensus 175 ~~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~~~--~~~~--~~~~~~di~~~s~sK~~~g~~g-G~~~~~~-~- 241 (405)
T 2vi8_A 175 PRIIDFAKFREIADEV------GAYLMVDMAHIAGLVAA--GLHP--NPVPYAHFVTTTTHKTLRGPRG-GMILCQE-Q- 241 (405)
T ss_dssp CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHHHT--TSSC--CSTTTCSEEEEESSSTTCCCSC-EEEEECH-H-
T ss_pred CccCCHHHHHHHHHHc------CCEEEEEcccccccccc--CcCC--CccccCCEEEEeccccCCCCCC-eEEEEcH-H-
Confidence 6777899999999999 99999999998533211 1111 1123588999999999987888 9888753 2
Q ss_pred ccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce
Q 014163 296 LPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (429)
Q Consensus 296 ~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 374 (429)
+.+.+.... .+. .++.+.....++.++++.+..+++++..++..++++++.+.|+++ +++++.++...+
T Consensus 242 ~~~~l~~~~~~~~---------~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 311 (405)
T 2vi8_A 242 FAKQIDKAIFPGI---------QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNH 311 (405)
T ss_dssp HHHHHHHHHTTTT---------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred HHHHHHhhhcccc---------cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCce
Confidence 222221111 111 133333444455566665544578899999999999999999998 588876533466
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhccCceecccC-C---CCCCCceEEEEEecc
Q 014163 375 LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKL-P---MSYPWSTKLRVISHL 426 (429)
Q Consensus 375 ~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~-~---~~~~~~~~lRi~~~~ 426 (429)
++.+.+... +.+..++.+.|. ++|+.++... + ........+|++++.
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~l~----~~gi~v~~g~~~~~~~~~~~~~~iRis~~~ 362 (405)
T 2vi8_A 312 LLLVDLRPQ-QLTGKTAEKVLD----EVGITVNKNTIPYDPESPFVTSGIRIGTAA 362 (405)
T ss_dssp EEEEECGGG-TCCHHHHHHHHH----HHTEECEEECCTTCSSCTTTCSEEEEECHH
T ss_pred EEEEEccCC-CCCHHHHHHHHH----HcCceeccCcCccccCCCCCCCceEEeeee
Confidence 777777532 346667777776 8999987642 1 011123469999874
No 108
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.91 E-value=1e-23 Score=205.41 Aligned_cols=317 Identities=12% Similarity=0.019 Sum_probs=207.0
Q ss_pred CCcccccccc-C-CChHHHHHHHHHHcCc-CCCC-CccCh-hhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHH
Q 014163 56 PRLNLASFVT-T-WMEPECDKLVMASINK-NYVD-MDEYP-VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130 (429)
Q Consensus 56 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~ 130 (429)
..++|.++.+ + +++|.+.+++.+.+.. .... ...++ +......++++.+++++|++. .+++++|++|+
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~ 112 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR-------ALLFISGFAAN 112 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE-------EEEESCHHHHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc-------EEEeCCcHHHH
Confidence 3344555442 3 3456788887776654 1110 01111 122344566677888889852 66677779999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhC---CeEEE
Q 014163 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDEN---TICVA 207 (429)
Q Consensus 131 ~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~---~~~v~ 207 (429)
..++.++.. .++.|+++.++|.++..+++..|++++.+|. +|+++|++++++. +++|+
T Consensus 113 ~~~~~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~~v~ 173 (384)
T 1bs0_A 113 QAVIAAMMA-------------KEDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASPCPGQQMVV 173 (384)
T ss_dssp HHHHHHHCC-------------TTCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHhCC-------------CCcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhcCCCCeEEE
Confidence 988877643 2358999999999999999999999988873 5789999999864 78888
Q ss_pred EeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEE
Q 014163 208 AILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGW 287 (429)
Q Consensus 208 ~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~ 287 (429)
+++++||+|.+.|+++|.++|++| ++++|+|++|+.+............++ .+.|+++.+.||+++ |.| |+
T Consensus 174 ~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~-~~G-G~ 244 (384)
T 1bs0_A 174 TEGVFSMDGDSAPLAEIQQVTQQH------NGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFG-VSG-AA 244 (384)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHT------TCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTS-SCC-EE
T ss_pred EeCCCCCCCCccCHHHHHHHHHHc------CcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhh-ccC-cE
Confidence 899999999999999999999999 999999999975432100000011112 247899999999886 666 88
Q ss_pred EEEeCCCCcccccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014163 288 VVWRTKDDLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (429)
Q Consensus 288 l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 366 (429)
++.++ +.. +.+... ..|... ++.+.....++.++++.+.....++..++..++++++.+.|++++ +++
T Consensus 245 ~~~~~-~~~-~~l~~~~~~~~~~--------~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~ 313 (384)
T 1bs0_A 245 VLCSS-TVA-DYLLQFARHLIYS--------TSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-FTL 313 (384)
T ss_dssp EEECH-HHH-HHHHHHCHHHHSS--------BCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CEE
T ss_pred EEeCH-HHH-HHHHHhchhhhcC--------CCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-Ccc
Confidence 88743 222 222111 111110 122223333444555544221457788899999999999999985 776
Q ss_pred eeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCCCCCceEEEEEecc
Q 014163 367 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMSYPWSTKLRVISHL 426 (429)
Q Consensus 367 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~~~~~~~lRi~~~~ 426 (429)
.. + ..+++.+.++. ..+..++.+.|. ++|+.+... .+....+...+|++++.
T Consensus 314 ~~-~-~~~~~~~~~~~--~~~~~~l~~~l~----~~gi~v~~~~~~~~~~~~~~~Ri~~~~ 366 (384)
T 1bs0_A 314 AD-S-CSAIQPLIVGD--NSRALQLAEKLR----QQGCWVTAIRPPTVPAGTARLRLTLTA 366 (384)
T ss_dssp CS-C-CSSBCCEEEES--HHHHHHHHHHHH----HTTEECCEECTTSSCTTCEEECCBCCT
T ss_pred cC-C-CCCEEEEEeCC--HHHHHHHHHHHH----HCCcEEEeecCCCCCCCCceEEEEEcC
Confidence 62 2 45666677642 234455666666 889998765 22212345789999873
No 109
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.91 E-value=3e-23 Score=209.18 Aligned_cols=317 Identities=10% Similarity=-0.036 Sum_probs=206.7
Q ss_pred HHHHHHHHHcCc----CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHH-HHHHHHH
Q 014163 71 ECDKLVMASINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFK-RKWQQKR 145 (429)
Q Consensus 71 ~~~~~~~~~~~~----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~-~~~~~~~ 145 (429)
.+.+.+...+.. ....|...++..++++++.+++.+..|.+.+. ..+++|+|+++++.+++.++. .
T Consensus 110 ~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~~------ 180 (500)
T 3tcm_A 110 DSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANA---DDIFLTDGASPGVHLMMQLLIRN------ 180 (500)
T ss_dssp HHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG---GGEEEESSSHHHHHHHHHHHCCS------
T ss_pred HHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc---ccEEEcCCHHHHHHHHHHHHcCC------
Confidence 333333555544 23456677788999999999999888866432 248999999999999988875 3
Q ss_pred HhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCC-ccccCHHHHHHHhhh------CCeEEEEeeCCCccccc
Q 014163 146 KEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE------NTICVAAILGSTLTGEF 218 (429)
Q Consensus 146 ~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~ 218 (429)
.++.|+++.++|.++..+++..|++++.++++++ +|.+|+++|++++++ ++++|++++++||||.+
T Consensus 181 -------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~ 253 (500)
T 3tcm_A 181 -------EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQV 253 (500)
T ss_dssp -------TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCC
T ss_pred -------CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCccc
Confidence 2368999999999999999999999999999753 478999999999987 78899999999999998
Q ss_pred c---ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-------cC--CCCee-EEEEcCcccC--CCCC
Q 014163 219 E---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-------FR--LPLVK-SINVSGHKYG--LVYA 283 (429)
Q Consensus 219 ~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-------~~--~~~~d-~~~~s~hK~~--~~p~ 283 (429)
. ++++|+++|++| ++++++|++|+.+.. ........ ++ ..... .+..|.+|.+ .++.
T Consensus 254 ~s~~~l~~i~~la~~~------~~~li~Deay~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~ 325 (500)
T 3tcm_A 254 LAEENQYDIVKFCKNE------GLVLLADEVYQENIY--VDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK 325 (500)
T ss_dssp CCHHHHHHHHHHHHHH------TCEEEEECTTTTCBC--CTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG
T ss_pred CCHHHHHHHHHHHHHc------CCEEEEecCcccccc--CCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc
Confidence 4 477788889999 999999999987432 11111111 11 12233 3445789976 3677
Q ss_pred CeEEEEEe--CCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc---------CHHHHHHHHHHHHHHHH
Q 014163 284 GVGWVVWR--TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL---------GFEGYKNIMENCMGNAR 352 (429)
Q Consensus 284 g~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l---------~~~g~~~~~~~~~~~~~ 352 (429)
++|++++. +++ +.+.+....... .+.+.....++..++... -....+++.++..++++
T Consensus 326 R~G~~~~~~~~~~-~~~~l~~~~~~~----------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 394 (500)
T 3tcm_A 326 RGGYFEITGFSAP-VREQIYKIASVN----------LCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAK 394 (500)
T ss_dssp CCEEEEEESCCTT-HHHHHHHHHHTT----------CCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCHH-HHHHHHHHHhcc----------cCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 88999874 332 222221111100 111112222222222210 01234666778889999
Q ss_pred HHHHHHHhCCCeEEeeCCCCceEEEE-EecCCC---------CCCHHHHHHHHHHHHhccCceecccC-CCCCCCceEEE
Q 014163 353 ALREGLEKTGRFEILSKDVGVPLVAF-SLKDSS---------AHTVFEISEGLRKKLNRFQVVYPQKL-PMSYPWSTKLR 421 (429)
Q Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f-~~~~~~---------~~~~~~~~~~L~~~l~~~G~~~~~~~-~~~~~~~~~lR 421 (429)
++.+.|++++++++..+ ..++++| ++..+. +...++.. +.+.|.++||.+.+.. .....+...+|
T Consensus 395 ~l~~~L~~~~g~~~~~~--~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~--~~~ll~~~gI~v~pg~~f~~~~g~~~iR 470 (500)
T 3tcm_A 395 ALEHAFNKLEGITCNEA--EGAMYVFPQICLPQKAIEAAKAANKAPDAFY--ALRLLESTGIVVVPGSGFGQVPGTWHFR 470 (500)
T ss_dssp HHHHHHHTSTTEECCCC--CBTTEECCEECCCHHHHHHHHHHTSCHHHHH--HHHHHHHHCEECEESTTTCCCTTCCBEE
T ss_pred HHHHHHhcCCCcEEecC--CeEEEEeeeecCchhhHHHHHhcCCCcHHHH--HHHHHHHCCEEEEeCcccCCCCCCCEEE
Confidence 99999999987887643 4555544 232110 11112211 1223337899988762 22235666799
Q ss_pred EEecc
Q 014163 422 VISHL 426 (429)
Q Consensus 422 i~~~~ 426 (429)
++++.
T Consensus 471 is~~~ 475 (500)
T 3tcm_A 471 CTILP 475 (500)
T ss_dssp EESCS
T ss_pred EEECC
Confidence 99974
No 110
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=3.5e-24 Score=205.80 Aligned_cols=309 Identities=15% Similarity=0.041 Sum_probs=210.2
Q ss_pred ccCCChHHHHHHHHHHcCc---CCCC-C---ccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE-eCCchHHHHHHHH
Q 014163 64 VTTWMEPECDKLVMASINK---NYVD-M---DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGL 135 (429)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~t~a~~~al~ 135 (429)
.|...++.+.+++...+.. |+.+ + ..++...++-+++++.+++++|++.+ ..++| |.|+|+++.+++.
T Consensus 12 gpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~----~~v~f~t~~~T~a~n~~~~ 87 (361)
T 3m5u_A 12 GPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD----YEVLFLQGGASLQFAMIPM 87 (361)
T ss_dssp SSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEEcCcHHHHHHHHHH
Confidence 3445678889988877653 2221 1 12445677777999999999999642 23777 9999999998888
Q ss_pred HHHHHHHHHHHhcCCCCCCc-EEEEcCCCchHHHHHHHhcCceeEEEeccCCccc--cCHHHHHHHhhhCCeEEEEeeCC
Q 014163 136 AFKRKWQQKRKEQGKPYDKP-NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYV--MNPVKAVELVDENTICVAAILGS 212 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~-~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~--~d~~~l~~~i~~~~~~v~~~~~~ 212 (429)
.+. + | ++. .|+.+..+|. +...++..|++++.++++++ +. ++++. + |+++|++|.+++.+
T Consensus 88 ~~~-~--------~---~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~~~-g~~~~~~~~--~-l~~~t~lv~~~~~e 150 (361)
T 3m5u_A 88 NLA-L--------N---GVCEYANTGVWTKK-AIKEAQILGVNVKTVASSEE-SNFDHIPRV--E-FSDNADYAYICSNN 150 (361)
T ss_dssp HHC-C--------S---SCEEEEECSHHHHH-HHHHHHHTTCCEEEEEECTT-TTSCSCCCC--C-CCTTSSEEEEESEE
T ss_pred hcC-C--------C---CeEEEEeCCHHHHH-HHHHHHHcCCceEEEecccC-cCCCcCChh--h-cCCCCCEEEEeCCC
Confidence 764 1 1 111 2333333443 44556778999999999875 33 56666 4 88899999999999
Q ss_pred CccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeC
Q 014163 213 TLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRT 292 (429)
Q Consensus 213 ~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~ 292 (429)
|.+|.+.|. | + ++ |+++|||++++.+..+ .|+ ..+|++++++|||+ +|.|+|++++++
T Consensus 151 ~~tG~~~~~--i---~-~~------~~~~~vD~~q~~g~~~-------id~--~~~d~~~~s~~K~~-gp~G~g~l~~~~ 208 (361)
T 3m5u_A 151 TIYGTQYQN--Y---P-KT------KTPLIVDASSDFFSRK-------VDF--SNIALFYGGVQKNA-GISGLSCIFIRK 208 (361)
T ss_dssp TTTTEECSS--C---C-CC------SSCEEEECGGGTTSSC-------CCC--TTEEEEEEETTTTS-SCTTCEEEEEEH
T ss_pred CCcceeCCc--c---c-cc------CCEEEEEcccccCCCC-------CCc--ccCCEEEEechhcc-CCCccEEEEEcH
Confidence 999998552 3 3 26 9999999999865442 233 25899999999999 599999999986
Q ss_pred CCCcccccc--cccCCCCCC--CCCceeccCCchhHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCe-EE
Q 014163 293 KDDLPDELV--FHINYLGSD--QPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRF-EI 366 (429)
Q Consensus 293 ~~~~~~~~~--~~~~~~~~~--~~~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~-~~ 366 (429)
+. + ..+. ..+.+.... .......+|++...++++.++++.+... |++++.++..++++++++.|++++++ .+
T Consensus 209 ~~-~-~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~ 286 (361)
T 3m5u_A 209 DM-L-ERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKG 286 (361)
T ss_dssp HH-H-HHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEE
T ss_pred HH-H-hhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeec
Confidence 42 1 1111 011121100 0001122788888888999999988777 89999999999999999999999876 65
Q ss_pred eeCCC--CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 367 LSKDV--GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 367 ~~~~~--~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
..++. ..++++|.+++..+.+ .++...|. ++|+.++.... .. ..+|+|++.
T Consensus 287 ~~~~~~rs~~ivsf~~~~~~~~~-~~~~~~L~----~~gI~~~~g~~--~~--g~iRiS~~~ 339 (361)
T 3m5u_A 287 HADKKDRSLMNVSFNIAKNKDLE-PLFVKEAE----EAGMIGLKGHR--IL--GGIRASIYN 339 (361)
T ss_dssp SSCGGGBCSSEEEEEESSCTTHH-HHHHHHHH----HTTEECCBCCT--TT--CSEEEECCT
T ss_pred cCCHHHcCCeEEEEECCCchhhh-HHHHHHHH----HCCCEEecCCC--cc--CeEEEEccC
Confidence 43321 3468999986411222 34555555 89999765311 11 239999865
No 111
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.91 E-value=3.7e-23 Score=203.92 Aligned_cols=300 Identities=11% Similarity=0.054 Sum_probs=201.4
Q ss_pred hHHHHHHHHHHcCcCCCC-CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHHHHHHH
Q 014163 69 EPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRK 146 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~~~~~~ 146 (429)
+|.+.+++.+.+...... +....+..++.+++++++++++|.+. .+++++||+|+.+++.++ ..
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-------~i~~~~gt~al~~~~~~~~~~------- 80 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPY-------CVPTTSGSTALMLALEALGIG------- 80 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCC-------
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC-------
Confidence 467888887777553222 33334445556677788999999863 778888999999998887 32
Q ss_pred hcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHH
Q 014163 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 226 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~ 226 (429)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+++ |++|...++++|.+
T Consensus 81 ------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~ 151 (418)
T 2c81_A 81 ------EGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINE 151 (418)
T ss_dssp ------TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHH
T ss_pred ------CcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHH
Confidence 136899999999999999999999999999986458899999999999888887654 58999999999999
Q ss_pred HHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCC
Q 014163 227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINY 306 (429)
Q Consensus 227 la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~ 306 (429)
+|+++ |+++|+|++|+.+.. + ... .. .....++++++++||+++++ +.|+++.++++.. +.+.....+
T Consensus 152 ~~~~~------~~~li~D~a~~~~~~-~-~~~-~~-~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~-~~~~~~~~~ 219 (418)
T 2c81_A 152 IAQEH------NLFVIEDCAQSHGSV-W-NNQ-RA-GTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLF-ELIQQLRAD 219 (418)
T ss_dssp HHHHT------TCEEEEECTTCTTCE-E-TTE-ET-TSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHH-HHHHHHHBT
T ss_pred HHHHC------CCEEEEECcccccCc-c-CCE-ec-ccccceEEEeccCCcccCCC-CeEEEEECCHHHH-HHHHHHHHh
Confidence 99999 999999999987542 1 111 00 01224788888889998774 7788776443322 111111111
Q ss_pred CCC----------CCCC-c---eeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCC
Q 014163 307 LGS----------DQPT-F---TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG 372 (429)
Q Consensus 307 ~~~----------~~~~-~---~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 372 (429)
... ...+ . .+.|.......+. +++.....+.+++..++.+++++++.+.|++++++++..++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 297 (418)
T 2c81_A 220 SRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQ--SAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQ 297 (418)
T ss_dssp TEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTT
T ss_pred CccccccccccccchhhccccccccCcCCCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 000 0000 0 0001110011111 1222122345778888889999999999999988988744322
Q ss_pred ----c-eEEEEEecCC--CCCCHHHHHHHHHHHHhcc-Cce---eccc
Q 014163 373 ----V-PLVAFSLKDS--SAHTVFEISEGLRKKLNRF-QVV---YPQK 409 (429)
Q Consensus 373 ----~-~~v~f~~~~~--~~~~~~~~~~~L~~~l~~~-G~~---~~~~ 409 (429)
. .++++.+++. .+.+..++.+.|. ++ ||. ++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~gI~~~~v~~~ 341 (418)
T 2c81_A 298 VSRQTYYGYVFRFDPVKFGGLNADQFCEILR----EKLNMGTFYLHPP 341 (418)
T ss_dssp EEECCCSEEEEEECGGGTTTCCHHHHHHHHH----HHHTCCTTTEECC
T ss_pred CcccccEEEEEEEccccccccCHHHHHHHHH----HcCCCCccccccc
Confidence 2 3566776420 1356778888887 88 998 7654
No 112
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.91 E-value=4.8e-23 Score=204.21 Aligned_cols=335 Identities=11% Similarity=-0.022 Sum_probs=214.1
Q ss_pred cCCCCC--ccccccccCCChHHHHHHHHHHcCcCC------------CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 014163 52 LDGNPR--LNLASFVTTWMEPECDKLVMASINKNY------------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKT 117 (429)
Q Consensus 52 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~ 117 (429)
..++|. ++++........+.+.+++........ ..|....+..++++++.+++.+..|..... +.
T Consensus 33 ~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~-~~ 111 (435)
T 3piu_A 33 EVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTF-DP 111 (435)
T ss_dssp TTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCC-CG
T ss_pred cccCCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCC-CH
Confidence 344554 344443333455667777665443221 124445567899999888888766622110 01
Q ss_pred CCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHH-hcCceeEEEeccCC-ccccCHHHH
Q 014163 118 AVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR-YFEVELKEVKLEEG-YYVMNPVKA 195 (429)
Q Consensus 118 ~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~-~~G~~v~~v~~~~~-~~~~d~~~l 195 (429)
..+.+|+|+++|+..++.++++ .++.|+++.++|.++...+. ..|++++.++.+++ ++.+|+++|
T Consensus 112 ~~v~~~~gg~~a~~~~~~~l~~-------------~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 178 (435)
T 3piu_A 112 NHLVLTAGATSANETFIFCLAD-------------PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETAL 178 (435)
T ss_dssp GGEEEEEHHHHHHHHHHHHHCC-------------TTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHH
T ss_pred HHEEEcCChHHHHHHHHHHhcC-------------CCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHH
Confidence 2489999999999999988754 13689999999999988887 78999999998742 367999999
Q ss_pred HHHhhh------CCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc--ccc-
Q 014163 196 VELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDF- 263 (429)
Q Consensus 196 ~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~- 263 (429)
++++++ ++++|++++++||||.+.+ +++|+++|++| ++++++|++|+++.. ...... ..+
T Consensus 179 ~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~Dea~~~~~~--~~~~~~~~~~~~ 250 (435)
T 3piu_A 179 EEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK------GIHLISDEIYSGTAF--SSPSFISVMEVL 250 (435)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCC--SSSCCCCHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc------CCEEEEecccccccc--CCCCCcCHHHhc
Confidence 999987 7899999999999999844 58888999999 999999999987432 111110 000
Q ss_pred CC---------CCeeEEEEcCcccCC-CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHH
Q 014163 264 RL---------PLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333 (429)
Q Consensus 264 ~~---------~~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~ 333 (429)
.. ...+.+..+.+|.++ ++.++|+++.+++.. ...+.....+. +.+.....++.+.+.
T Consensus 251 ~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~l~ 318 (435)
T 3piu_A 251 KDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMV-VAAATKMSSFG-----------LVSSQTQHLLSAMLS 318 (435)
T ss_dssp HC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHH-HHHHHHHGGGS-----------CCCHHHHHHHHHHHH
T ss_pred cccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHH-HHHHHHHhhcC-----------CCCHHHHHHHHHHhc
Confidence 00 123377889999875 778899998754322 12221111111 111122222222332
Q ss_pred HcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCC----CHHHHHHHHHHHHhcc-Ccee
Q 014163 334 RLG--FEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAH----TVFEISEGLRKKLNRF-QVVY 406 (429)
Q Consensus 334 ~l~--~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~----~~~~~~~~L~~~l~~~-G~~~ 406 (429)
... .+.+++..++..++++++.+.|++.+ ++++.+. ...++.+.+...... +..++.+.|. ++ |+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~~gi~v 392 (435)
T 3piu_A 319 DKKLTKNYIAENHKRLKQRQKKLVSGLQKSG-ISCLNGN-AGLFCWVDMRHLLRSNTFEAEMELWKKIV----YEVHLNI 392 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEECCCC-SSSEEEEECGGGSSSSSHHHHHHHHHHHH----HTSCEEC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCC-eeEEEEEEcccccccCCchhHHHHHHHHH----HHCCEEE
Confidence 111 23456777888899999999999885 8876443 335666666431100 2345555555 55 9998
Q ss_pred cccCCCCCCCceEEEEEecc
Q 014163 407 PQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 407 ~~~~~~~~~~~~~lRi~~~~ 426 (429)
.+.......+...+|++++.
T Consensus 393 ~~g~~~~~~~~~~iRi~~~~ 412 (435)
T 3piu_A 393 SPGSSCHCTEPGWFRVCFAN 412 (435)
T ss_dssp EEGGGGTCSSTTEEEEECSS
T ss_pred eCCcccCCCCCCEEEEEeeC
Confidence 76422122345679999864
No 113
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.91 E-value=5.3e-23 Score=198.70 Aligned_cols=305 Identities=11% Similarity=0.036 Sum_probs=208.8
Q ss_pred ccccccccCC-ChHHHHHHHHHHcCcC---CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHH
Q 014163 58 LNLASFVTTW-MEPECDKLVMASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLA 133 (429)
Q Consensus 58 ~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~a 133 (429)
++|....++. ++|.+.+++.+.+... ...|. .+... ++++++++++|++. ..+.+|+|+++|+.++
T Consensus 29 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~----~lr~~la~~~g~~~-----~~i~~t~g~~~al~~~ 98 (360)
T 3hdo_A 29 IKLNTNENPYPPSPEVVKAILEELGPDGAALRIYP-SASSQ----KLREVAGELYGFDP-----SWIIMANGSDEVLNNL 98 (360)
T ss_dssp EECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCH----HHHHHHHHHHTCCG-----GGEEEESSHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCC-CCchH----HHHHHHHHHhCcCc-----ceEEEcCCHHHHHHHH
Confidence 4455555554 4577888888887764 33332 22334 44556788888754 2489999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCC
Q 014163 134 GLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGST 213 (429)
Q Consensus 134 l~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~ 213 (429)
+.++.. .+++|+++.++|.++...++..|++++.+|.+++ +.+ +++++.+ +++++++++++|
T Consensus 99 ~~~l~~-------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~--~~l~~~~--~~~~v~i~~p~n 160 (360)
T 3hdo_A 99 IRAFAA-------------EGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD-FRI--AGFPERY--EGKVFFLTTPNA 160 (360)
T ss_dssp HHHHCC-------------TTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT-SSB--TTCCSSB--CSSEEEEESSCT
T ss_pred HHHHhC-------------CCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC-CCH--HHHHhhc--CCCEEEEeCCCC
Confidence 888743 1368999999999999999999999999999764 555 4444433 356899999999
Q ss_pred ccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccC-CCCCCeEEEEEeC
Q 014163 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-LVYAGVGWVVWRT 292 (429)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~-~~p~g~g~l~~~~ 292 (429)
|||.+.|+++|.++|+++ ++++++|++|+.+.- ..... .......+.+..+.+|++ +++.++|+++.+
T Consensus 161 ptG~~~~~~~l~~l~~~~------~~~li~De~~~~~~~---~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~- 229 (360)
T 3hdo_A 161 PLGPSFPLEYIDELARRC------AGMLVLDETYAEFAE---SNALE-LVRRHENVVVTRTLSKSYSLAGMRIGLAIAR- 229 (360)
T ss_dssp TTCCCCCHHHHHHHHHHB------SSEEEEECTTGGGSS---CCCTH-HHHHCSSEEEEEESTTTTSCTTSCCEEEECC-
T ss_pred CCCCCcCHHHHHHHHHHC------CCEEEEECChHhhCC---cchhH-HhccCCCEEEEecchHhhcCCccceeeEeeC-
Confidence 999999999999999999 999999999986421 11111 011123557777899986 467889998763
Q ss_pred CCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCC
Q 014163 293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG 372 (429)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 372 (429)
++ +.+.+...... ++.+.....++..+++ ..+.+++..++..++++++.+.|+++ ++++.. + .
T Consensus 230 ~~-~~~~~~~~~~~-----------~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~-~ 292 (360)
T 3hdo_A 230 PE-VIAALDKIRDH-----------YNLDRLAQAACVAALR--DQAYLSECCRRIRETREWFTTELRSI-GYDVIP-S-Q 292 (360)
T ss_dssp HH-HHHHHHHHSCS-----------CCSCHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECC-C-S
T ss_pred HH-HHHHHHHhCCC-----------CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcC-C-C
Confidence 22 22222111110 1222223333334444 24567888899999999999999998 487753 2 4
Q ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 373 VPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
.+++.+.+. +.+..++.+.|. ++|+.++.+.. .....++|++++++
T Consensus 293 ~~~~~~~~~---~~~~~~l~~~l~----~~gi~v~~~~~--~~~~~~iRis~~~~ 338 (360)
T 3hdo_A 293 GNYLFATPP---DRDGKRVYDGLY----ARKVLVRHFSD--PLLAHGMRISIGTR 338 (360)
T ss_dssp SSEEEEECT---TCCHHHHHHHHH----HTTEECBCCCS--TTTTTSEEEECCCH
T ss_pred ccEEEEECC---CCCHHHHHHHHH----HCCEEEEECCC--CCCCCEEEEEcCCH
Confidence 566666653 346777777777 89999876532 22345699999754
No 114
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.91 E-value=6.2e-24 Score=206.23 Aligned_cols=290 Identities=14% Similarity=0.055 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHHHHHHHh
Q 014163 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKE 147 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~~~~~~~ 147 (429)
.+.+.+++.+.+.... +...+...++|+ .+++++|.+. +++++|||+|+..++.++ ..
T Consensus 16 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~----~la~~~~~~~-------~i~~~sgt~al~~~l~~l~~~-------- 74 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW--FILGDEDKKFEQ----EFADYCNVNY-------CIGCGNGLDALHLILKGYDIG-------- 74 (373)
T ss_dssp HHHHHHHHHHHHHHTC--CSSSHHHHHHHH----HHHHHHTSSE-------EEEESCHHHHHHHHHHHTTCC--------
T ss_pred CHHHHHHHHHHHHCCC--ccCCchHHHHHH----HHHHHhCCCe-------EEEeCCHHHHHHHHHHHcCCC--------
Confidence 3556677766665543 344556565554 4788888863 899999999999998876 22
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHH
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l 227 (429)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|++|.+.|+++|.++
T Consensus 75 -----~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l 146 (373)
T 3frk_A 75 -----FGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRI 146 (373)
T ss_dssp -----TTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHH
T ss_pred -----CcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHH
Confidence 2368999999999999999999999999999855589999999999999888776 67799999999999999
Q ss_pred HHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEc--CcccCCCCCCeEEEEEeCCCCcccccccccC
Q 014163 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305 (429)
Q Consensus 228 a~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s--~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~ 305 (429)
|+++ |+++|+|++|+.+.. .... ..+ ...|.+++| +||++.++...|+++.+++.. .+.+.....
T Consensus 147 ~~~~------~~~li~D~a~~~g~~--~~~~---~~~-~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~-~~~~~~~~~ 213 (373)
T 3frk_A 147 AKKY------NLKLIEDAAQAHGSL--YKGM---KVG-SLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDL-AEKIKALSN 213 (373)
T ss_dssp HHHH------TCEEEEECTTCTTCE--ETTE---ETT-SSSSEEEEECCTTSSSCCSSSCEEEEESCHHH-HHHHHHHHB
T ss_pred HHHc------CCEEEEECCcccCCE--ECCE---ecc-ccccEEEEeCcCCCccCccceeEEEEeCCHHH-HHHHHHHHh
Confidence 9999 999999999986443 1111 111 114555555 889986634456666544322 111111111
Q ss_pred CCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--CceEEEEEecCC
Q 014163 306 YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--GVPLVAFSLKDS 383 (429)
Q Consensus 306 ~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~~~v~f~~~~~ 383 (429)
+...........|... .+..+.+++.....+++++..++..++++++.+.|++++ +.+...+. ..+.+.|.+..
T Consensus 214 ~g~~~~~~~~~~g~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~- 289 (373)
T 3frk_A 214 YGSEKKYHHIYKGFNS--RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS- 289 (373)
T ss_dssp TTCSBTTBCCSCCCBC--CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE-
T ss_pred cCcccCCccccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe-
Confidence 1000000000011111 111222333333345678888999999999999999988 76643321 12222333321
Q ss_pred CCCCHHHHHHHHHHHHhccCceecccC
Q 014163 384 SAHTVFEISEGLRKKLNRFQVVYPQKL 410 (429)
Q Consensus 384 ~~~~~~~~~~~L~~~l~~~G~~~~~~~ 410 (429)
.+..++.+.|. ++||.++.++
T Consensus 290 --~~~~~l~~~L~----~~gI~v~~~~ 310 (373)
T 3frk_A 290 --EKRDELQKYLN----NNGIGTLIHY 310 (373)
T ss_dssp --SSHHHHHHHHH----HTTBCCBCSC
T ss_pred --CCHHHHHHHHH----HCCCCcccCc
Confidence 14566777776 8999988653
No 115
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.91 E-value=1.9e-22 Score=200.72 Aligned_cols=325 Identities=14% Similarity=0.062 Sum_probs=215.0
Q ss_pred CCCCCccccccccCC-ChHHHHHHHHHHcCc-----CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCc
Q 014163 53 DGNPRLNLASFVTTW-MEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126 (429)
Q Consensus 53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~ 126 (429)
.+...++|+.+.++. ++|.+.+++.+.+.. ....|....+..++++++.+++. .|.+.+. ...++|+|+
T Consensus 67 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~---~~i~~t~G~ 141 (449)
T 3qgu_A 67 PDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAA---DEIFISDGS 141 (449)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCG---GGEEEESCH
T ss_pred CCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCH---HHEEEccCH
Confidence 345567788877765 456688888777653 22345444567888888777776 5554321 348999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCce----------eEEEeccCC-ccccCHHHH
Q 014163 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE----------LKEVKLEEG-YYVMNPVKA 195 (429)
Q Consensus 127 t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~----------v~~v~~~~~-~~~~d~~~l 195 (429)
++++..+ .++.. .++.|+++.++|.++...++..|.+ ++.+|++++ ++..|++++
T Consensus 142 ~~al~~~-~~l~~-------------~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (449)
T 3qgu_A 142 KCDIARI-QMMFG-------------SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA 207 (449)
T ss_dssp HHHHHHH-HHHHC-------------SSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC
T ss_pred HHHHHHH-HHHhC-------------CCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc
Confidence 9999877 55433 2368999999999999999999998 999998743 345554321
Q ss_pred HHHhhhCCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-C---CCCe
Q 014163 196 VELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-R---LPLV 268 (429)
Q Consensus 196 ~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~---~~~~ 268 (429)
+++++|++++++||||.+.+ +++|+++|++| |+++++|++|+++.. .+.....+ . ..+.
T Consensus 208 -----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~------~~~li~Dea~~~~~~---~~~~~~~~~~~~~~~~~ 273 (449)
T 3qgu_A 208 -----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN------GSILVYDAAYALYIS---NPDCPKTIYEIPGADEV 273 (449)
T ss_dssp -----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCC---CTTSCSSGGGSTTGGGT
T ss_pred -----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC------CcEEEEEcchHhhhc---CCCCCCCHhhccCCCCc
Confidence 57899999999999999854 88889999999 999999999987542 11111111 1 1346
Q ss_pred eEEEEcCcccCC-CCCCeEEEEEeCCCCccc-ccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH---HHHHHH
Q 014163 269 KSINVSGHKYGL-VYAGVGWVVWRTKDDLPD-ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF---EGYKNI 343 (429)
Q Consensus 269 d~~~~s~hK~~~-~p~g~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~---~g~~~~ 343 (429)
+.+..+.+|+++ ++.++|+++.+++ .... .......+.... ..+-.....+++.+++..+.. +.+++.
T Consensus 274 ~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 346 (449)
T 3qgu_A 274 AIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHADWNRVM------TTCFNGASNIVQAGGLACLQPEGLKEMNAM 346 (449)
T ss_dssp EEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHHHHHHH------HHSCCCCCHHHHHHHHHHTSHHHHHHHHHH
T ss_pred EEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHHHHHHh------hcccCCCCHHHHHHHHHHHhhcCHHHHHHH
Confidence 788889999875 7889999887543 2211 000000000000 000001233445555555543 456788
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEE
Q 014163 344 MENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRV 422 (429)
Q Consensus 344 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi 422 (429)
.++..++++++.+.|++++ +++..+. ...++.+.++ +.+..++.+.|. ++ |+.+.+.......+..++|+
T Consensus 347 ~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~l~----~~~gI~v~pg~~f~~~~~~~iRi 417 (449)
T 3qgu_A 347 IKFYKENAQILKTTFTEMG-FSVYGGD-DAPYIWVGFP---GKPSWDVFAEIL----ERCNIVTTPGSGYGPAGEGFVRA 417 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCEEESS-SSSEEEEECT---TSCHHHHHHHHH----HHHCEECEEGGGGCGGGTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHCC-CeeeCCC-CeeEEEEECC---CCCHHHHHHHHH----HHCCEEEecchHhCCCCCCeEEE
Confidence 8899999999999999985 8777553 4556666654 456778887777 55 99887652111234567999
Q ss_pred Eecc
Q 014163 423 ISHL 426 (429)
Q Consensus 423 ~~~~ 426 (429)
++..
T Consensus 418 s~~~ 421 (449)
T 3qgu_A 418 SAFG 421 (449)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9754
No 116
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.91 E-value=1.1e-22 Score=201.17 Aligned_cols=290 Identities=11% Similarity=-0.004 Sum_probs=195.5
Q ss_pred hhhHHHHHHHHHHHHHhhCCC--CCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHH
Q 014163 91 PVTTELQNRCVNMIAHLFNTP--VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE 168 (429)
Q Consensus 91 ~~~~~le~~~~~~la~l~g~~--~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~ 168 (429)
.+..++++.+.+++.+.+|.+ .+. ....+|+|+++++..++.++++ .++.|+++.++|.++.
T Consensus 83 ~g~~~lr~~la~~~~~~~g~~~~~~~---~~i~~~~G~~~ai~~~~~~~~~-------------~gd~Vl~~~p~y~~~~ 146 (428)
T 1iay_A 83 HGLPEFRKAIAKFMEKTRGGRVRFDP---ERVVMAGGATGANETIIFCLAD-------------PGDAFLVPSPYYPAFN 146 (428)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSCCCT---TSCEEEEHHHHHHHHHHHHHCC-------------TTCEEEEESSCCTTHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCh---hhEEEccChHHHHHHHHHHhCC-------------CCCeEEEccCCCcchH
Confidence 357889999999998888844 211 2488999999999999888754 1368999999999887
Q ss_pred HHH-HhcCceeEEEeccC-CccccCHHHHHHHhhh------CCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCC
Q 014163 169 KFA-RYFEVELKEVKLEE-GYYVMNPVKAVELVDE------NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGW 237 (429)
Q Consensus 169 ~~~-~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~ 237 (429)
..+ ...|++++.+|.++ +++.+|+++|++++++ ++++|++++++||||.+.| +++|+++|+++
T Consensus 147 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------ 220 (428)
T 1iay_A 147 RDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQH------ 220 (428)
T ss_dssp HHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTT------
T ss_pred HHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHC------
Confidence 744 47899999999864 3468999999999975 6788999999999999988 99999999999
Q ss_pred CccEEeecccccccccccCCCC-c-cccCCC------Cee--EEEEcCcccCC-CCCCeEEEEEeCCCCcccccccccCC
Q 014163 238 DTPIHVDAASGGFIAPFLYPDL-E-WDFRLP------LVK--SINVSGHKYGL-VYAGVGWVVWRTKDDLPDELVFHINY 306 (429)
Q Consensus 238 ~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~------~~d--~~~~s~hK~~~-~p~g~g~l~~~~~~~~~~~~~~~~~~ 306 (429)
++++|+|++|+++.. ..... . ..+... +.| .+..+.||+++ ++.++|++++.+++.. +.+.....+
T Consensus 221 ~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~-~~~~~~~~~ 297 (428)
T 1iay_A 221 NIHLVCDEIYAATVF--DTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVV-NCARKMSSF 297 (428)
T ss_dssp TCEEEEECTTGGGCC--SSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHH-HHHHHHHTT
T ss_pred CeEEEEecccccccc--CCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHH-HHHHHHHhc
Confidence 999999999987431 11111 0 011100 145 67789999875 6678899987543222 222111111
Q ss_pred CCCCCCCceeccCCchhHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEec
Q 014163 307 LGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-----EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (429)
Q Consensus 307 ~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~-----~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (429)
++. ..+++.++...+.. +.+++..++..++++++.+.|++++ ++++.+. ...++.++++
T Consensus 298 -----------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~ 361 (428)
T 1iay_A 298 -----------GLV---STQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKCLKNN-AGLFCWMDLR 361 (428)
T ss_dssp -----------SCC---CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCS-SSSEEEEECG
T ss_pred -----------ccC---CHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCC-eeEEEEEech
Confidence 111 22334444444432 2456778888899999999999984 7665332 4556667764
Q ss_pred CCCC----CCHHHHHHHHHHHHhcc-CceecccCCCCCCCceEEEEEec
Q 014163 382 DSSA----HTVFEISEGLRKKLNRF-QVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 382 ~~~~----~~~~~~~~~L~~~l~~~-G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.... .+..++.+.|. ++ |+.+.........+..++|++++
T Consensus 362 ~~~~~~~~~~~~~l~~~l~----~~~gi~v~~~~~~~~~~~~~iRis~~ 406 (428)
T 1iay_A 362 PLLRESTFDSEMSLWRVII----NDVKLNVSPGSSFECQEPGWFRVCFA 406 (428)
T ss_dssp GGCSSSSHHHHHHHHHHHH----HTSCEECEEGGGGTCSSSSEEEEECS
T ss_pred hhcCCCchhHHHHHHHHHH----HhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 3100 12234455554 66 99987652111122457999997
No 117
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.91 E-value=1.6e-22 Score=199.00 Aligned_cols=310 Identities=14% Similarity=0.047 Sum_probs=200.3
Q ss_pred ChHHHHHHHHHHcCcCC-------CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINKNY-------VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~ 140 (429)
.+|.+.+++...+...+ ..+...+...++++.+++++++++|++.+ ...+++| |+|+.+++.++..
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-----~i~~~sG-t~a~~~~~~~~~~- 109 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-----NVQPNSG-SQANQGVYAALIN- 109 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-----ECCCSSH-HHHHHHHHHHHSC-
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-----ceEeccH-HHHHHHHHHHhcC-
Confidence 46778888877663322 11233356678888899999999999652 2444444 8999999888743
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCCchHHHH---HHHhcCce--eEEEeccCCccccCHHHHHHHhh-hCCeEEEEeeCCCc
Q 014163 141 WQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVE--LKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTL 214 (429)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s~~~---~~~~~G~~--v~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~ 214 (429)
.+++|+++.++|.++.. .+...|.. +..++++ +++.+|+++|+++++ .++++|++++++|
T Consensus 110 ------------~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~- 175 (417)
T 3n0l_A 110 ------------PGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKEKPKLIVCGASAY- 175 (417)
T ss_dssp ------------TTCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHHCCSEEEECCSSC-
T ss_pred ------------CCCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhcCCeEEEECCccc-
Confidence 23689999999977544 33444444 4455566 347899999999998 6899988877774
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCC
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~ 294 (429)
|.+.|+++|.++|++| |+++|+|++|+.+.. ........ ...+|+++.++||++.++. .|+++.++++
T Consensus 176 -G~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~~-~G~~~~~~~~ 243 (417)
T 3n0l_A 176 -ARVIDFAKFREIADEI------GAYLFADIAHIAGLV--VAGEHPSP--FPYAHVVSSTTHKTLRGPR-GGIIMTNDEE 243 (417)
T ss_dssp -CSCCCHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSCCC--TTTCSEEEEESSTTTCSCS-CEEEEESCHH
T ss_pred -CccCCHHHHHHHHHHc------CCEEEEECccchhhh--hcccCCCc--cccceEEEeeCccccCCCC-eeEEEECCHH
Confidence 8999999999999999 999999999854332 11111111 2257999999999985554 5888775432
Q ss_pred CcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce
Q 014163 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (429)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 374 (429)
.. +.+.... +... .++.......++.+++.....++++++.++..++++++.+.|++. +++++......+
T Consensus 244 ~~-~~~~~~~-~~~~-------~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 313 (417)
T 3n0l_A 244 LA-KKINSAI-FPGI-------QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNH 313 (417)
T ss_dssp HH-HHHHHHH-TTTT-------CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSS
T ss_pred HH-HHHhhhh-CCcc-------cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCce
Confidence 22 2211111 1100 133333455556666665555667899999999999999999995 488775333456
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCC---CCCceEEEEEec
Q 014163 375 LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMS---YPWSTKLRVISH 425 (429)
Q Consensus 375 ~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~---~~~~~~lRi~~~ 425 (429)
++.+.+.+. +.+..++.+.|. ++|+.++.. .+.. ......+|+++.
T Consensus 314 ~~~~~~~~~-~~~~~~~~~~l~----~~gi~v~~~~~~~~~~~~~~~~~~ri~~~ 363 (417)
T 3n0l_A 314 LVLMSFLDR-EFSGKDADLALG----NAGITANKNTVPGEIRSPFITSGLRLGTP 363 (417)
T ss_dssp EEEEECTTS-SSCHHHHHHHHH----HTTEECEECCCTTCCSCTTTCSEEEEECH
T ss_pred EEEEEcccC-CCCHHHHHHHHH----HcCeEEeccccCCCCcccCCCCeeEecCH
Confidence 666766432 456777777777 899998754 2211 122356898763
No 118
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.91 E-value=5.3e-23 Score=202.19 Aligned_cols=302 Identities=12% Similarity=-0.027 Sum_probs=204.3
Q ss_pred ChHHHHHHHHHHcCcCCC---CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINKNYV---DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~ 144 (429)
.+|.+.+++.+.+..... .+....+..++.+++++++++++|.+. .+++++|++|+..++.++..
T Consensus 74 ~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~-------~i~~~sGt~a~~~~l~~~~~----- 141 (409)
T 3kki_A 74 NHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE-------CLLSQSGWNANVGLLQTICQ----- 141 (409)
T ss_dssp TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe-------EEEecchHHHHHHHHHHhcC-----
Confidence 457788888877765221 112222333444567778899999864 56677778999988887644
Q ss_pred HHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCccccccChHH
Q 014163 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKL 223 (429)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~ 223 (429)
.++.|+++.++|.++...++..|+++..++. +|+++|++++++ ++++|++++++|++|.+.|+++
T Consensus 142 --------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 142 --------PNTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp --------TTCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred --------CCCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 2368999999999999999999998877653 689999999986 5899999999999999999999
Q ss_pred HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCC-CCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccc
Q 014163 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302 (429)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~ 302 (429)
|.++|++| |+++|+|++|+++............++. ..+|+++.+.+|+++++ .|+++.++ +.. +.+..
T Consensus 208 l~~la~~~------~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~--gg~v~~~~-~~~-~~~~~ 277 (409)
T 3kki_A 208 LVNISKEF------GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR--AGAIWCNN-EVN-RCVPF 277 (409)
T ss_dssp HHHHHHHH------TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS--CEEEEESS-SGG-GTHHH
T ss_pred HHHHHHHc------CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC--ceEEEECH-HHH-HHHHH
Confidence 99999999 9999999999764321111100001111 25789999999998765 37766543 322 22211
Q ss_pred c-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEec
Q 014163 303 H-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (429)
Q Consensus 303 ~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (429)
. ..+. +.++.+.....+..++++.+.. .++..++..++++++.+.|++++ +++. . ..+++.+.+.
T Consensus 278 ~~~~~~--------~~~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~--~-~~~~~~~~~~ 343 (409)
T 3kki_A 278 ISYPAI--------FSSTLLPYEAAGLETTLEIIES--ADNRRQHLDRMARKLRIGLSQLG-LTIR--S-ESQIIGLETG 343 (409)
T ss_dssp HCHHHH--------HSBCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHTTT-CCCC--C-SSSEEEEEEE
T ss_pred hCcCcc--------ccCCCcHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CccC--C-CCCEEEEEeC
Confidence 1 1111 1112222334445555554422 25777888899999999999985 6654 2 4567777765
Q ss_pred CCCCCCHHHHHHHHHHHHhccCceeccc-CCCCCCCceEEEEEec
Q 014163 382 DSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMSYPWSTKLRVISH 425 (429)
Q Consensus 382 ~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~~~~~~~lRi~~~ 425 (429)
. ..+..++.+.|. ++|+.+... .+....+..++|++++
T Consensus 344 ~--~~~~~~~~~~L~----~~Gv~v~~~~~~~~~~~~~~iRi~~~ 382 (409)
T 3kki_A 344 D--ERNTEKVRDYLE----SNGVFGSVFCRPATSKNKNIIRLSLN 382 (409)
T ss_dssp S--HHHHHHHHHHHH----HTTEECEEECTTSSCTTCEEEEEECC
T ss_pred C--HHHHHHHHHHHH----HCCceEeeeCCCCcCCCCcEEEEEcc
Confidence 3 123445566665 889998765 4434456788999986
No 119
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.91 E-value=3.5e-22 Score=197.41 Aligned_cols=299 Identities=13% Similarity=0.015 Sum_probs=199.9
Q ss_pred CccChhhHHHHHHHHHHHHHhhCCCCCC--C--CCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCC
Q 014163 87 MDEYPVTTELQNRCVNMIAHLFNTPVAD--D--KTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN 162 (429)
Q Consensus 87 ~~~~~~~~~le~~~~~~la~l~g~~~~~--~--~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~ 162 (429)
|....+..++++++.+++++.+|.+.+. + ....+++|+|+++|+.+++.++.+ .+++|+++.+
T Consensus 74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------------~gd~Vlv~~p 140 (425)
T 2r2n_A 74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-------------PGDNVLLDEP 140 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-------------TTCEEEEESS
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-------------CCCEEEEeCC
Confidence 4455677889999999999999987521 0 002489999999999999988754 1368999999
Q ss_pred CchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh------------hCCeEEEE-eeCCCccccccChH---HHHH
Q 014163 163 VQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD------------ENTICVAA-ILGSTLTGEFEDVK---LLHD 226 (429)
Q Consensus 163 ~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~------------~~~~~v~~-~~~~~~tG~~~~l~---~I~~ 226 (429)
+|..+...++..|++++.+|++++ .+|+++|+++++ +++++|++ .+++||||.+.+.+ +|++
T Consensus 141 ~y~~~~~~~~~~g~~~~~v~~~~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 218 (425)
T 2r2n_A 141 AYSGTLQSLHPLGCNIINVASDES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE 218 (425)
T ss_dssp CCHHHHHHHGGGTCEEEEECEETT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCEEEEeCcCCC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence 999999999999999999998764 399999999997 35777766 58899999997655 9999
Q ss_pred HHHHhhhccCCCccEEeecccccccccccCCCC-c-cccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccccc
Q 014163 227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E-WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI 304 (429)
Q Consensus 227 la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~-~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~ 304 (429)
+|++| ++++|+|++|+.+.. ..... . ..+...+.+.+..+.+|+++++.++|+++.+++ +.+.+....
T Consensus 219 ~a~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~--l~~~l~~~~ 288 (425)
T 2r2n_A 219 LARKY------DFLIIEDDPYYFLQF--NKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKP--LIERVILHI 288 (425)
T ss_dssp HHHHT------TCEEEEECTTGGGBS--SSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHH--HHHHHHHHH
T ss_pred HHHHc------CCEEEEECCcccccC--CCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHH--HHHHHHHHH
Confidence 99999 999999999986431 11100 0 112222356777889999877778999988642 222221111
Q ss_pred CCCCCCCCCceeccCCchhHHHHHHHHHHHcCH----HHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeCCCCceEEEEE
Q 014163 305 NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF----EGYKNIMENCMGNARALREGLEK-TGRFEILSKDVGVPLVAFS 379 (429)
Q Consensus 305 ~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~----~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~v~f~ 379 (429)
.... ++.+.....++..+++.++. +.+++..++..++++++.+.|++ ++++..+..+....++.++
T Consensus 289 ~~~~---------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~ 359 (425)
T 2r2n_A 289 QVST---------LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK 359 (425)
T ss_dssp HTTT---------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEE
T ss_pred HHhc---------CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEE
Confidence 1110 12222233333334433222 23456667778899999999987 5666433333245566667
Q ss_pred ecCCCCCCHHH-HHHHHHHHHhccCceeccc--CCCC-CCCceEEEEEec
Q 014163 380 LKDSSAHTVFE-ISEGLRKKLNRFQVVYPQK--LPMS-YPWSTKLRVISH 425 (429)
Q Consensus 380 ~~~~~~~~~~~-~~~~L~~~l~~~G~~~~~~--~~~~-~~~~~~lRi~~~ 425 (429)
++. ..+..+ +.+.|. ++|+.+.+. +... ..+..++|++++
T Consensus 360 ~~~--~~~~~~~~~~~l~----~~gv~v~pg~~f~~~~~~~~~~iRis~~ 403 (425)
T 2r2n_A 360 VKG--INDVKELIEEKAV----KMGVLMLPGNAFYVDSSAPSPYLRASFS 403 (425)
T ss_dssp ETT--CSCCHHHHHTHHH----HTTEECEEGGGGSSSTTSCCCEEEEECS
T ss_pred eCC--CCCHHHHHHHHHH----HCCcEEechhhhcCCCCCCCCEEEEEeC
Confidence 643 234444 456666 899998765 1111 123467999986
No 120
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.90 E-value=1.7e-22 Score=196.28 Aligned_cols=295 Identities=10% Similarity=0.031 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHH-HHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHHHHHHH
Q 014163 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMI-AHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRK 146 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~l-a~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~~~~~~ 146 (429)
++.+.+++.+.+..++.. ...+...++|++ + ++++|... ..+++++||+|+.+++.++ ..
T Consensus 15 ~~~i~~a~~~~~~~~~~~-~~~~~~~~l~~~----~~a~~~g~~~------~~v~~~sgt~al~~al~~l~~~------- 76 (377)
T 3ju7_A 15 VIEYLDELKEIDASHIYT-NYGPINQRFEQT----IMSGFFQNRG------AVTTVANATLGLMAAIQLKKRK------- 76 (377)
T ss_dssp GGGGHHHHHHHHHHTCCS-SSCHHHHHHHHH----HHHHTSTTCS------EEEEESCHHHHHHHHHHHHSCT-------
T ss_pred cHHHHHHHHHHHHcCCcc-cCCHHHHHHHHH----HHHHHhCCCC------eEEEeCCHHHHHHHHHHHcCCC-------
Confidence 455777777777665432 125666666655 7 88888321 2889999999999998876 32
Q ss_pred hcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHh-hhC--CeEEEEeeCCCccccccChHH
Q 014163 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV-DEN--TICVAAILGSTLTGEFEDVKL 223 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i-~~~--~~~v~~~~~~~~tG~~~~l~~ 223 (429)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++ +++ |++|+ ++|++|.+.|+++
T Consensus 77 ------~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~ 147 (377)
T 3ju7_A 77 ------KGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEE 147 (377)
T ss_dssp ------TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHH
T ss_pred ------CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHH
Confidence 23699999999999999999999999999998656899999999998 666 88775 6778999999999
Q ss_pred HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc
Q 014163 224 LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH 303 (429)
Q Consensus 224 I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~ 303 (429)
|.++|+ + |+++|+|++|+.+.. ... ....-....++++++++||++.++ ..|++++++++.. ..+...
T Consensus 148 i~~la~-~------~~~vi~D~a~a~g~~--~~~-~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~-~~~~~~ 215 (377)
T 3ju7_A 148 YEELEK-K------GVPVVVDAAPGFGLM--NGG-MHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDI-QRIKRM 215 (377)
T ss_dssp HHHHHH-T------TCCBEEECTTCTTCE--ETT-EETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHH-HHHHHH
T ss_pred HHHHHh-c------CCEEEEECCCccCCe--ECC-EeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHH-HHHHHH
Confidence 999999 9 999999999975432 111 010001135788888899998764 4566666544321 221111
Q ss_pred cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE-eeCCC---Cc-eEEEE
Q 014163 304 INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI-LSKDV---GV-PLVAF 378 (429)
Q Consensus 304 ~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~---~~-~~v~f 378 (429)
..+...........|.+.....+.++.++.. .+.+++..++.+++++++.+.|++++++.+ +.+.. .. .++.+
T Consensus 216 ~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (377)
T 3ju7_A 216 GNFGFDTNRECTMMGFNCKMSEYAAAIGIAT--MKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPI 293 (377)
T ss_dssp TBTTBCTTSCBCSSCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEE
T ss_pred HhcCCCCCCceeeccccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEE
Confidence 1111000000000111111222333333322 356788889999999999999999875421 11111 11 13455
Q ss_pred EecCCCCCCHHHHHHHHHHHHhccCceecccC
Q 014163 379 SLKDSSAHTVFEISEGLRKKLNRFQVVYPQKL 410 (429)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~ 410 (429)
.+++ ..+.+++.+.|. ++||.++.++
T Consensus 294 ~~~~--~~~~~~l~~~L~----~~gI~~~~~~ 319 (377)
T 3ju7_A 294 LCPE--EVRNKQVIEDLK----KQKIEARLYF 319 (377)
T ss_dssp ECCT--TSCHHHHHHHHH----TTTBCCBCTT
T ss_pred EeCC--hhhHHHHHHHHH----HCCCceeccc
Confidence 5432 234667777777 9999988764
No 121
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.90 E-value=3.5e-22 Score=190.88 Aligned_cols=298 Identities=12% Similarity=0.054 Sum_probs=205.1
Q ss_pred ccccccccC-CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHH
Q 014163 58 LNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLA 136 (429)
Q Consensus 58 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a 136 (429)
+.|.....+ +++|.+.+++...+... ..| ..++..+ +++.+++++|++. ....+|+|+++++.+++.+
T Consensus 19 i~l~~n~~~~~~~~~v~~a~~~~~~~~-~~y-~~~~~~~----lr~~la~~~~~~~-----~~i~~t~G~~~~l~~~~~~ 87 (337)
T 3p1t_A 19 VCLAFNENPEAVEPRVQAAIAAAAARI-NRY-PFDAEPR----VMRKLAEHFSCPE-----DNLMLVRGIDECFDRISAE 87 (337)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHGGGT-TSC-CTTHHHH----HHHHHHHHHTSCG-----GGEEEESHHHHHHHHHHHH
T ss_pred eEeeCCCCCCCCCHHHHHHHHHhhhhh-ccC-CCCchHH----HHHHHHHHhCcCH-----HHEEEeCCHHHHHHHHHHh
Confidence 445554333 45677888888776542 223 2344444 4555788888865 2489999999999988877
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccc
Q 014163 137 FKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTG 216 (429)
Q Consensus 137 ~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG 216 (429)
+ . +++|+++.++|.++...++..|++++.+|++++ +.+|+++|+++ .+++++++++++||||
T Consensus 88 ~-~--------------gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~--~~~~~v~i~~p~nptG 149 (337)
T 3p1t_A 88 F-S--------------SMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD-LLLDPNDLAQV--SRDDCVVLANPSNPTG 149 (337)
T ss_dssp S-T--------------TSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT-SSBCHHHHTTC--CTTEEEEEESSCTTTC
T ss_pred c-C--------------CCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHhh--cCCCEEEEeCCCCCCC
Confidence 5 1 268999999999999999999999999999875 78999999887 4689999999999999
Q ss_pred cccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEEEEEeCCCC
Q 014163 217 EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDD 295 (429)
Q Consensus 217 ~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~ 295 (429)
.+.|+++|.++|+++ ++ +++|++|+.+.. . . .........+.+..+.+|+++ ++.++|+++.++ +.
T Consensus 150 ~~~~~~~l~~l~~~~------~~-~ivDea~~~~~~--~-~--~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~-~~ 216 (337)
T 3p1t_A 150 QALSAGELDQLRQRA------GK-LLIDETYVDYSS--F-R--ARGLAYGENELVFRSFSKSYGLAGLRLGALFGPS-EL 216 (337)
T ss_dssp CCCCHHHHHHHHHHC------SE-EEEECTTGGGSS--C-S--SSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH-HH
T ss_pred CCCCHHHHHHHHHhC------Cc-EEEECCChhhcc--c-c--ccccccCCCEEEEeeCchhccCcchheEEEEeCH-HH
Confidence 999999999999999 87 666999986431 1 1 111122346788889999875 778899987643 22
Q ss_pred cccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce
Q 014163 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-FEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (429)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 374 (429)
. ..+.. ... . ++.+ .+.+.++...+. .+.+++.+++..++++++.+.|++++ +++..+ ..+
T Consensus 217 ~-~~l~~---~~~----~----~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~ 278 (337)
T 3p1t_A 217 I-AAMKR---KQW----F----CNVG---TLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASS--EAN 278 (337)
T ss_dssp H-HHHHT---TSC----T----TCSC---HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCC--SSS
T ss_pred H-HHHHh---hcC----C----CCCC---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCC--CCe
Confidence 1 22111 000 0 1222 223333333343 34567788888889999999999984 766532 466
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 375 LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 375 ~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
++.|.... ..++.+.|. ++|+.++..... ....++|+++++
T Consensus 279 ~~~~~~~~-----~~~~~~~l~----~~gi~v~~g~~~--~~~~~iRis~~~ 319 (337)
T 3p1t_A 279 FVLVENAA-----GERTLRFLR----ERGIQVKDAGQF--GLHHHIRISIGR 319 (337)
T ss_dssp EEEEECTT-----THHHHHHHH----HTTEECEEGGGG--TCCSEEEEECCC
T ss_pred EEEEEcCC-----HHHHHHHHH----HCCeEEEECccC--CCCCeEEEecCC
Confidence 77776532 245566666 899998765221 113579999875
No 122
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.90 E-value=2.4e-23 Score=206.84 Aligned_cols=269 Identities=12% Similarity=-0.003 Sum_probs=187.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCc
Q 014163 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV 176 (429)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~ 176 (429)
.+++++++++ +|.+. ...+|+|+|+|+..++.++.. .+++|++++++|.++..++...|+
T Consensus 59 ~~~~~~~la~-~g~~~------~v~~~~G~t~a~~~~~~a~~~-------------~gd~Vlv~~~~h~s~~~~~~~~G~ 118 (446)
T 2x3l_A 59 ILKSMKQVEK-HSDYD------GYFLVNGTTSGILSVIQSFSQ-------------KKGDILMARNVHKSVLHALDISQQ 118 (446)
T ss_dssp HHHHHHHHCS-CTTEE------EEEESSHHHHHHHHHHHTTTT-------------SSSCEEECTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHh-cCCCc------eEEEeCCHHHHHHHHHHHhcC-------------CCCEEEEecCccHHHHHHHHHcCC
Confidence 4467778999 99862 378899999999999988743 236899999999999999999999
Q ss_pred eeEEEec--cCCc---cccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccc
Q 014163 177 ELKEVKL--EEGY---YVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (429)
Q Consensus 177 ~v~~v~~--~~~~---~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (429)
+++.++. +++. +.+|+++| +.+++++|++++ +|++|.+.|+++|+++|++| |+++|+|+||+++
T Consensus 119 ~~~~v~~~~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~------~~~livDea~~~~- 187 (446)
T 2x3l_A 119 EGHFIETHQSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQL------NIPVLIDEAHGAH- 187 (446)
T ss_dssp CEEECEEEECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHT------TCCEEEECTTCTT-
T ss_pred eEEEEeCeeccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhc------CCeEEEcchhhhh-
Confidence 9999998 4321 57899888 567789999998 56699999999999999999 9999999999872
Q ss_pred ccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcc-cccccccCCCCCCCCCceeccCCchhHHHHHHH
Q 014163 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP-DELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
..|. +. ..+....++|+++.|.||+++++.|+|+++++++ .+. ..+....... ..++++.....++.+
T Consensus 188 ~~f~-~~-~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~-~i~~~~~~~~~~~~--------~~~s~~~~~~aal~~ 256 (446)
T 2x3l_A 188 FGLQ-GF-PDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKN-APYRENIIEYLSYF--------QTSSPSYLIMASLES 256 (446)
T ss_dssp TTST-TS-CCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETT-CTTHHHHHHHHHHH--------SCSSCCHHHHHHHHH
T ss_pred hccC-CC-CCChHHcCCCEEEECCccccccccccEEEEEcCC-cCCHHHHHHHHHHH--------cCCCchHHHHHHHHH
Confidence 2222 21 2222112589999999999999999999998764 221 1110000000 013454445556666
Q ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccC
Q 014163 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKL 410 (429)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~ 410 (429)
+++.+...+.++..++..++++++++. +++++.+. ....+.+.++ +.+..++.+.|. ++|+.+..
T Consensus 257 a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~-~~~~l~i~~~---~~~~~~l~~~L~----~~GI~v~~-- 321 (446)
T 2x3l_A 257 AAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVD-DPLKLLIKYE---GFTGHDIQNWFM----NAHIYLEL-- 321 (446)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECS-STTEEEEECT---TSCHHHHHHHHH----HTTEEESE--
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCC-CCeEEEEEeC---CcCHHHHHHHHH----HCCCEEEe--
Confidence 666665555555778888888888877 47777653 2345666654 456778888887 88998752
Q ss_pred CCCCCCceEEEEEecc
Q 014163 411 PMSYPWSTKLRVISHL 426 (429)
Q Consensus 411 ~~~~~~~~~lRi~~~~ 426 (429)
.+...+|++++.
T Consensus 322 ----~g~~~iRi~~~~ 333 (446)
T 2x3l_A 322 ----ADDYQALAILPL 333 (446)
T ss_dssp ----ECSSCEEEECCC
T ss_pred ----cCCCEEEEEeec
Confidence 122459999863
No 123
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.90 E-value=2.5e-22 Score=198.80 Aligned_cols=337 Identities=11% Similarity=0.021 Sum_probs=217.2
Q ss_pred HHHHHHHHHHhhcc-CCCCCccccccccCCC-hHHHHHHHHHHcCc-----CCCCCccChhhHHHHHHHHHHHHHhhCCC
Q 014163 39 KEAAYQVINDELML-DGNPRLNLASFVTTWM-EPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHLFNTP 111 (429)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l~g~~ 111 (429)
++.+.+........ .+.+.++|+.+.+..+ +|.+.+++.+.+.. ....|....+..++++++.+|+.+.++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~ 118 (432)
T 3ei9_A 39 FPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG 118 (432)
T ss_dssp HHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC
Confidence 44444443333222 3345567888877654 56688887776653 22334445577899999888887655554
Q ss_pred CCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCc------------eeE
Q 014163 112 VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELK 179 (429)
Q Consensus 112 ~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~------------~v~ 179 (429)
. ...++|+|+++++.. +.++.+ .++.|+++.++|.++...++..|. +++
T Consensus 119 ~-----~~i~~t~G~~~al~~-l~~l~~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 179 (432)
T 3ei9_A 119 D-----DDVFVSDGAKCDISR-LQVMFG-------------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIE 179 (432)
T ss_dssp G-----GGEEEESCHHHHHHH-HHHHHC-------------TTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCE
T ss_pred c-----ceEEECCChHHHHHH-HHHHcC-------------CCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceE
Confidence 3 348999999999875 344432 236899999999999999888884 688
Q ss_pred EEeccCC-ccccCHHHHHHHhhhCCeEEEEeeCCCcccccc---ChHHHHHHHHHhhhccCCCccEEeeccccccccccc
Q 014163 180 EVKLEEG-YYVMNPVKAVELVDENTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255 (429)
Q Consensus 180 ~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~ 255 (429)
.+|++++ ++..|+++ .+++++|++++|+||||.+. ++++|+++|++| |+++++|++|+.+...
T Consensus 180 ~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~------~~~li~Dea~~~~~~~-- 246 (432)
T 3ei9_A 180 YMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN------GSIIVYDSAYAMYMSD-- 246 (432)
T ss_dssp EEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEECTTGGGCCS--
T ss_pred EeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc------CcEEEEccchHhhccC--
Confidence 8888642 24455332 35788999999999999885 477788889999 9999999999875421
Q ss_pred CCCCc-ccc-CCCCeeEEEEcCcccCC-CCCCeEEEEEeCCCCc------ccccccccCCCCCCCCCceeccCCchhHHH
Q 014163 256 YPDLE-WDF-RLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDL------PDELVFHINYLGSDQPTFTLNFSKGSSQII 326 (429)
Q Consensus 256 ~~~~~-~~~-~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~ 326 (429)
..... ..+ +....+.+..+.+|.++ ++.++|+++.+++... ...+........ ++ ...+
T Consensus 247 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~ 314 (432)
T 3ei9_A 247 DNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCF---------NG---ASNI 314 (432)
T ss_dssp SCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSC---------CC---SCHH
T ss_pred CCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhcccc---------CC---CCHH
Confidence 11001 011 11245688889999875 7888999887653210 111110000000 11 2233
Q ss_pred HHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccC
Q 014163 327 AQYYQFIRLGF---EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQ 403 (429)
Q Consensus 327 ~~~~al~~l~~---~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G 403 (429)
++.+++..+.. +.+++..++..++++++.+.|++++ +++..+. ...++.+.++ +.+..++.+.|.+ +.|
T Consensus 315 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ll~---~~g 386 (432)
T 3ei9_A 315 SQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG-YDVYGGK-NAPYVWVHFP---NQSSWDVFAEILE---KTH 386 (432)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEECS-SSSEEEEECT---TSCHHHHHHHHHH---HHC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC-ceecCCC-cceEEEEECC---CCCHHHHHHHHHH---HCC
Confidence 45555555543 4467888889999999999999984 8777543 4556666664 3466677777661 459
Q ss_pred ceecccCCCCCCCceEEEEEeccc
Q 014163 404 VVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+.+.+.......+..++|+++...
T Consensus 387 v~v~~g~~f~~~~~~~iRis~~~~ 410 (432)
T 3ei9_A 387 VVTTPGSGFGPGGEGFVRVSAFGH 410 (432)
T ss_dssp EECEEGGGGCGGGTTEEEEECCSC
T ss_pred EEEeCchHhCCCCCCEEEEEecCC
Confidence 998765222223456799998653
No 124
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.90 E-value=2.4e-23 Score=200.86 Aligned_cols=310 Identities=13% Similarity=0.036 Sum_probs=206.8
Q ss_pred CChHHHHHHHHHHcCcC--C--CCCcc---ChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCc-hHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKN--Y--VDMDE---YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS-SEAIMLAGLAFK 138 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~--~--~~~~~---~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~-t~a~~~al~a~~ 138 (429)
.+++.+.+++.+.+... . ..+.. ++...++.+++++++++++|++.. ..+++|+|+ |+|+..++.++.
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~----~~v~~~~g~gt~al~~~~~~l~ 88 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND----YQILFLQGGASLQFTMLPMNLL 88 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT----EEEEEESSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEECCcchHHHHHHHHHhc
Confidence 55677888888877542 1 11222 567777888999999999999621 238899998 999998888765
Q ss_pred HHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHH-HhhhCCeEEEEeeCCCcccc
Q 014163 139 RKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE-LVDENTICVAAILGSTLTGE 217 (429)
Q Consensus 139 ~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~-~i~~~~~~v~~~~~~~~tG~ 217 (429)
.+ | ..+++|+++..+|++.. .++..| +++.+|++++++.+|+++|++ +++++|++|++++++|+||.
T Consensus 89 ~~--------~--~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 89 TK--------G--TIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp CT--------T--CEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred CC--------C--CcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 31 1 01246777877887644 357789 999999975335689999999 89888999999999999999
Q ss_pred ccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcc
Q 014163 218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297 (429)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~ 297 (429)
+.+ +| +++| |+++|+|++|+.+..+ .++ ...|+++.++||+++ |.|+|+++++++ ..
T Consensus 157 ~~~--~i---~~~~------~~~li~D~a~~~~~~~-------~~~--~~~di~~~s~sK~~~-~~G~G~~~~~~~-~~- 213 (360)
T 1w23_A 157 QYQ--NF---PEIN------HAPLIADMSSDILSRP-------LKV--NQFGMIYAGAQKNLG-PSGVTVVIVKKD-LL- 213 (360)
T ss_dssp ECS--SC---CCCC------SSCEEEECTTTTTSSC-------CCG--GGCSEEEEETTTTTS-CTTCEEEEEEHH-HH-
T ss_pred ecc--cc---cccC------CceEEEechhhcCCCC-------cCc--ccCCEEEEEcccccC-CCCcEEEEEcHH-HH-
Confidence 865 33 3378 9999999999864321 111 123899999999875 779999998753 22
Q ss_pred cccccccCCCCCCC----CCceeccCCchhHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhCCCe-EEeeCCC
Q 014163 298 DELVFHINYLGSDQ----PTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKNIMENCMGNARALREGLEKTGRF-EILSKDV 371 (429)
Q Consensus 298 ~~~~~~~~~~~~~~----~~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~ 371 (429)
+.+.....+..... ... ..++.+.....++..+++.+... +++++.++..++++++.+.|++++++ ....++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 292 (360)
T 1w23_A 214 NTKVEQVPTMLQYATHIKSDS-LYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG 292 (360)
T ss_dssp CSCCTTCCGGGCHHHHHHTTT-CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG
T ss_pred hhcccCCcchhhhhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCch
Confidence 21111111100000 000 11455555556666777766555 68899999999999999999998765 5432221
Q ss_pred -Cce-EEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 372 -GVP-LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 372 -~~~-~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
..+ ++.|++++ ..+..++.+.|. ++|+.+..... . ..++|++++.
T Consensus 293 ~~~~~~~~~~~~~--~~~~~~~~~~l~----~~gi~~~~~~~--~--~~~iRis~~~ 339 (360)
T 1w23_A 293 SRSLMNVTFNLRN--EELNQQFLAKAK----EQGFVGLNGHR--S--VGGCRASIYN 339 (360)
T ss_dssp GBCSSEEEEECSS--HHHHHHHHHHHH----HTTEESCBCCT--T--TCSEEEECCT
T ss_pred hccCcEEEEEcCC--CccHHHHHHHHH----HCCeeeecCCC--C--CCeEEEEecC
Confidence 334 77887642 122344444444 89998764321 1 3459999973
No 125
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.90 E-value=1.7e-23 Score=203.08 Aligned_cols=299 Identities=14% Similarity=0.069 Sum_probs=194.8
Q ss_pred CCccccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 56 PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
+.++++...|.. .+ +.+++.+.+.... |...+...+++ +.+++++|.+. .++++|||+|+..++.
T Consensus 7 ~~~~l~~~~~~~-~~-~~~~~~~~~~~~~--~~~~~~~~~l~----~~la~~~~~~~-------~~~~~~gt~a~~~~~~ 71 (374)
T 3uwc_A 7 PYSYLERQFADI-EP-YLNDLREFIKTAD--FTLGAELEKFE----KRFAALHNAPH-------AIGVGTGTDALAMSFK 71 (374)
T ss_dssp CSCCHHHHTSSC-HH-HHHHHHHHHHHTC--CSSCHHHHHHH----HHHHHHTTCSE-------EEEESCHHHHHHHHHH
T ss_pred eeeccccCCCCc-hH-HHHHHHHHHHcCC--cccChhHHHHH----HHHHHHhCCCc-------EEEeCCHHHHHHHHHH
Confidence 334444444433 23 6777766665442 34455555555 45888888863 8899999999998888
Q ss_pred HH-HHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 136 AF-KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 136 a~-~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
++ .. .+++|+++.++|.++..+++..|++++.+++++ ++.+|+++|++++++++++|+ ++|+
T Consensus 72 ~~~~~-------------~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~~n~ 134 (374)
T 3uwc_A 72 MLNIG-------------AGDEVITCANTFIASVGAIVQAGATPVLVDSEN-GYVIDPEKIEAAITDKTKAIM---PVHY 134 (374)
T ss_dssp HTTCC-------------TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TSSBCGGGTGGGCCTTEEEEC---CBCG
T ss_pred HcCCC-------------CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CCCcCHHHHHHhCCCCceEEE---EeCC
Confidence 76 32 236899999999999999999999999999984 488999999999998888776 8889
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCc--ccCCCCCCeEEEEEeC
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRT 292 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~h--K~~~~p~g~g~l~~~~ 292 (429)
+|.+.|+++|.++|+++ |+++|+|++|+.+.. .... ..+ ...|.+++++| |+++++...|+++.++
T Consensus 135 ~G~~~~~~~i~~~~~~~------~~~li~D~~~~~g~~--~~~~---~~~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~ 202 (374)
T 3uwc_A 135 TGNIADMPALAKIAKKH------NLHIVEDACQTILGR--INDK---FVG-SWGQFACFSLHPLKNLNVWSDAGVIITHS 202 (374)
T ss_dssp GGCCCCHHHHHHHHHHT------TCEEEEECTTCTTCE--ETTE---ETT-SSSSEEEEECSSSSSSCCSSCCEEEEESC
T ss_pred cCCcCCHHHHHHHHHHc------CCEEEEeCCCccCce--eCCe---ecc-ccccEEEEeCCCCCcCCccceeEEEEeCC
Confidence 99999999999999999 999999999986432 1111 111 12588888877 9986633467766554
Q ss_pred CCCcccccccccCCCCCCCCCcee--ccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEeeC
Q 014163 293 KDDLPDELVFHINYLGSDQPTFTL--NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR-FEILSK 369 (429)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~--~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~ 369 (429)
+... +.+.....+... ..+.. .+... ....+.+++.....+++++..++..++++++.+.|+++++ +++...
T Consensus 203 ~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 277 (374)
T 3uwc_A 203 DEYA-EKLRLYRNHGLI--NRDVCVEYGINC--RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVR 277 (374)
T ss_dssp HHHH-HHHHHHTBTTEE--ETTEESSCCCBC--BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCC
T ss_pred HHHH-HHHHHHHhcCcc--ccCccccccccC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccC
Confidence 3221 111111110000 00000 01110 1112223333333356788889999999999999999987 776543
Q ss_pred CCC--ceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccC
Q 014163 370 DVG--VPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKL 410 (429)
Q Consensus 370 ~~~--~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~ 410 (429)
+.. ...+.|.+.. .+..++.+.|. ++|+.++...
T Consensus 278 ~~~~~~~~~~~~~~~---~~~~~l~~~L~----~~gi~v~~~~ 313 (374)
T 3uwc_A 278 REGVYHVFHIYVLRV---KYRDQLFQYLK----DNGIEVKIHY 313 (374)
T ss_dssp CTTEECCCSSEEEEE---TTHHHHHHHHH----HTTBCCBCSC
T ss_pred CCCCceeeEEEEEEc---CCHHHHHHHHH----HCCCccccCC
Confidence 321 1222233221 14566777776 8999887643
No 126
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.90 E-value=1.4e-22 Score=194.97 Aligned_cols=306 Identities=14% Similarity=0.050 Sum_probs=203.3
Q ss_pred CCCCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHH
Q 014163 54 GNPRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIML 132 (429)
Q Consensus 54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~ 132 (429)
++..++|....+.. ++|.+.+++...+. ....|..... . ++++++++++|++. ...++|+|+++|+.+
T Consensus 14 g~~~id~~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~~-~----~lr~~la~~~~~~~-----~~i~~t~g~~~al~~ 82 (350)
T 3fkd_A 14 SSEIVNFSTTVWTDGDKDHLEKHLVENLN-CIRHYPEPDA-G----TLRQMLAKRNSVDN-----NAILVTNGPTAAFYQ 82 (350)
T ss_dssp --CCEECSCCSCCCSCCHHHHHHHHHTGG-GGGSCCCTTC-H----HHHHHHHHHTTCCG-----GGEEEESHHHHHHHH
T ss_pred cccEEEccCCCCCCCCCHHHHHHHHHhHh-HHhcCCCCcH-H----HHHHHHHHHhCcCH-----HHEEEcCCHHHHHHH
Confidence 34555566665544 45778888887773 2222322222 3 45566888899865 248999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEec-cCCccccCHHHHHHHhhhCCeEEEEeeC
Q 014163 133 AGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDENTICVAAILG 211 (429)
Q Consensus 133 al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~l~~~i~~~~~~v~~~~~ 211 (429)
++.++. +++|+++.++|.++..+++..|++++.+|+ +++ ..+++ +++++|+++++
T Consensus 83 ~~~~l~---------------gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~--------~~~~~v~i~~p 138 (350)
T 3fkd_A 83 IAQAFR---------------GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI-GEADF--------SNMDFCWLCNP 138 (350)
T ss_dssp HHHHTT---------------TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCG-GGSCC--------TTCSEEEEESS
T ss_pred HHHHHC---------------CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcc-ccCcc--------CCCCEEEEeCC
Confidence 888764 168999999999999999999999999999 653 34554 57899999999
Q ss_pred CCccccccChHHHHHHHHHhhhccCCC-ccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEEEE
Q 014163 212 STLTGEFEDVKLLHDLLTKKNEETGWD-TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVV 289 (429)
Q Consensus 212 ~~~tG~~~~l~~I~~la~~~~~~~~~~-~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~l~ 289 (429)
+||||.+.|+++|.++++.+ + .++++|++|+.+.. ........+.....+.+..|.+|+++ ++.++|+++
T Consensus 139 ~nptG~~~~~~~l~~l~~~~------~~~~li~Dea~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~ 210 (350)
T 3fkd_A 139 NNPDGRLLQRTEILRLLNDH------PDTTFVLDQSYVSFTT--EEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIV 210 (350)
T ss_dssp CTTTCCCCCHHHHHHHHHHC------TTSEEEEECTTTTSCS--SCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEE
T ss_pred CCCcCCCCCHHHHHHHHHhC------CCCEEEEECchhhhcc--CcchhhHHhhcCCCEEEEecCchhccCcchheEeEE
Confidence 99999999999999999998 5 79999999986432 11111112222345677888999876 778899988
Q ss_pred EeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhCCCeEEee
Q 014163 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-EGYKNIMENCMGNARALREGLEKTGRFEILS 368 (429)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~-~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 368 (429)
. +++.. +.+..... . ++. ..+.++++...+.. +.+.+.+++..++++++.+.|++++++++..
T Consensus 211 ~-~~~~~-~~~~~~~~-------~----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 274 (350)
T 3fkd_A 211 A-NKDFM-KRVAAFST-------P----WAV---NALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHP 274 (350)
T ss_dssp C-CHHHH-HHHHTTCC-------T----TCS---CHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECC
T ss_pred e-CHHHH-HHHHHhCC-------C----CCC---CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECC
Confidence 6 33222 22111110 1 122 22233333333321 1133334444588999999999998788753
Q ss_pred CCCCceEEEEEecCCCCCCHHHHHHHHHHHHhc-cCceecccCCCCCCCceEEEEEeccc
Q 014163 369 KDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR-FQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 369 ~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~-~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+ ..+++.++++. . +..++.+.|. + +|+.+++.......+..++|+++++.
T Consensus 275 -~-~~~~~~~~~~~--~-~~~~l~~~L~----~~~gi~v~~g~~f~~~~~~~iRis~~~~ 325 (350)
T 3fkd_A 275 -S-GTTFFLLRLKK--G-TAAELKKYML----EEYNMLIRDASNFRGLDESYVRITTQRP 325 (350)
T ss_dssp -C-SSSEEEEEESS--S-CHHHHHHHHH----HTTCEECEECTTSTTCCTTEEEEECCCH
T ss_pred -C-CCcEEEEECCC--C-CHHHHHHHHH----HHCCEEEEeCccCCCCCCCEEEEEcCCH
Confidence 2 46666677753 2 6677777777 7 89998765222223456799999753
No 127
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.90 E-value=9.3e-23 Score=199.75 Aligned_cols=308 Identities=13% Similarity=0.035 Sum_probs=205.4
Q ss_pred cCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE-eCCchHHHHHHHHHHHHHHHH
Q 014163 65 TTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-TVGSSEAIMLAGLAFKRKWQQ 143 (429)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-t~g~t~a~~~al~a~~~~~~~ 143 (429)
|..+++.+.+++..+.+........++...++.+++++++++++|++.. ..+++ |+|+|+|+.+++.++..+
T Consensus 48 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----~~i~~~t~g~t~al~~~~~~l~~~--- 120 (398)
T 2fyf_A 48 PSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDG----YEVILGNGGATAFWDAAAFGLIDK--- 120 (398)
T ss_dssp SCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT----CEEEEEETCHHHHHHHHHHHTCSS---
T ss_pred CCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCC----ceEEEeCCchhHHHHHHHHHhcCC---
Confidence 3345566777765532111111123566667778999999999999731 13777 999999999998887431
Q ss_pred HHHhcCCCCCCcEEEEcCCCchH-HHHHHHhc--CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccC
Q 014163 144 KRKEQGKPYDKPNIVTGANVQVC-WEKFARYF--EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFED 220 (429)
Q Consensus 144 ~~~~~g~~~~~~~vi~~~~~h~s-~~~~~~~~--G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 220 (429)
..++++...|.. +...+... |++++.|+++++ ...+. .++++|++|++++++|+||.+.|
T Consensus 121 -----------gv~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g-~~~~~-----~i~~~~~~v~~~~~~nptG~~~~ 183 (398)
T 2fyf_A 121 -----------RSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPG-SAPEP-----QTDPSVDVIAWAHNETSTGVAVA 183 (398)
T ss_dssp -----------CEEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTT-CCCCC-----CCCTTCSEEEEESEETTTTEECC
T ss_pred -----------CeEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCC-CCCCc-----cccCCCCEEEEeCcCCCcceecc
Confidence 124445555532 23345556 889999998742 33332 25678999999999999999999
Q ss_pred hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccc
Q 014163 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300 (429)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~ 300 (429)
+++|.++ + |+++|+|++|+.+..+ .++ ..+|+++.++||+++++.|+|+++++++ .+ +.+
T Consensus 184 ~~~i~~~---~------~~~vivD~a~~~~~~~-------~~~--~~~di~~~s~sK~~~~~gg~g~l~~~~~-~~-~~l 243 (398)
T 2fyf_A 184 VRRPEGS---D------DALVVIDATSGAGGLP-------VDI--AETDAYYFAPQKNFASDGGLWLAIMSPA-AL-SRI 243 (398)
T ss_dssp CCCCTTC---C-------CEEEEECTTTTTTSC-------CCG--GGCSEEEECTTSTTCSCSSEEEEEECHH-HH-HHH
T ss_pred hHHhhhh---c------CCeEEEEeccccCCcc-------cCc--ccCcEEEEecCcccCCCCceEEEEECHH-HH-HHh
Confidence 9999887 8 9999999999864321 112 2479999999999887767999887542 22 211
Q ss_pred cc-------ccCCCCCCC------CCceeccCCchhHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014163 301 VF-------HINYLGSDQ------PTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENCMGNARALREGLEKTGRFEI 366 (429)
Q Consensus 301 ~~-------~~~~~~~~~------~~~~~~~tr~~~~~~~~~~al~~l~~~g-~~~~~~~~~~~~~~l~~~L~~~~~~~~ 366 (429)
.. ...|..... .. ...++.+.....++.++++.+...| ++++.++..++++++.+.|++++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 322 (398)
T 2fyf_A 244 EAIAATGRWVPDFLSLPIAVENSLKN-QTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTP 322 (398)
T ss_dssp HHHHHTTCCCCGGGCHHHHHHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred hcccccCCCCCcEEehHHHhhhcccC-CCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCcee
Confidence 10 011211100 00 0114555555666777777666665 899999999999999999999977888
Q ss_pred ee-CC-CCce-EEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 367 LS-KD-VGVP-LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 367 ~~-~~-~~~~-~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+. .+ .+.+ +++|+++. +.+..++.+.|. ++|+.++... ...+..++|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~----~~gI~v~~g~--~~~~~~~iRis~~ 376 (398)
T 2fyf_A 323 FVTDPGLRSQVVGTIDFVD--DVDAGTVAKILR----ANGIVDTEPY--RKLGRNQLRVAMF 376 (398)
T ss_dssp SCCSGGGBCSSEEEEEECT--TSCHHHHHHHHH----HTTCBCCSCC--TTTCSSEEEEECC
T ss_pred ccCChhhcCCcEEEEECCC--CCCHHHHHHHHH----HCCcEEecCc--ccCCCCEEEEEec
Confidence 74 12 1345 88888743 467778888887 8899986431 1123467999997
No 128
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.90 E-value=5.3e-23 Score=201.58 Aligned_cols=302 Identities=14% Similarity=0.047 Sum_probs=193.6
Q ss_pred CCccccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 56 PRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
+.+++..+.+..+ +.+.+++.+.+..+ .|...+...++ ++.+++++|.+. .+++++|++|+..++.
T Consensus 31 ~~id~~~~~~~~~-~~v~~a~~~~~~~~--~y~~~~~~~~l----~~~la~~~~~~~-------~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEELR-AETDAAIARVLDSG--RYLLGPELEGF----EAEFAAYCETDH-------AVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHHTH-HHHHHHHHHHHHHT--CCSSSHHHHHH----HHHHHHHTTSSE-------EEEESCHHHHHHHHHH
T ss_pred cccccCcCCCCCC-HHHHHHHHHHHhcC--CCCCchhHHHH----HHHHHHHHCCCe-------EEEecCHHHHHHHHHH
Confidence 3344554444332 66778877776543 23334444444 455888888763 7888999999999888
Q ss_pred HH-HHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 136 AF-KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 136 a~-~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
++ .. .+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+ ++|+
T Consensus 97 ~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~ 160 (399)
T 2oga_A 97 GLGIG-------------PGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHL 160 (399)
T ss_dssp HTTCC-------------TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCG
T ss_pred HhCCC-------------CcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCC
Confidence 76 22 1368999999999999999999999999999864578999999999998887765 5788
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCc--ccCCCCCCeEEEEEeC
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRT 292 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~h--K~~~~p~g~g~l~~~~ 292 (429)
+|.+.|+++|.++|+++ |+++|+|++|+.+.. .... .++ ...|++++|.| |+++++...|+++.++
T Consensus 161 tG~~~~l~~i~~l~~~~------~~~li~Dea~~~g~~--~~~~---~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~ 228 (399)
T 2oga_A 161 YGHPADMDALRELADRH------GLHIVEDAAQAHGAR--YRGR---RIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGD 228 (399)
T ss_dssp GGCCCCHHHHHHHHHHH------TCEECEECTTCTTCE--ETTE---ETT-CTTCEEEEECCTTSSSCCSSCCEEEEESC
T ss_pred cCCccCHHHHHHHHHHc------CCEEEEECcccccCc--cCCe---ecc-cccCEEEEeCCCCccCCcCCceEEEEeCC
Confidence 99999999999999999 999999999986432 1111 111 12578888885 9886633567777654
Q ss_pred CCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCC
Q 014163 293 KDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG 372 (429)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 372 (429)
++.. +.+.................+.......+.+++++..+ +.+++..++..++++++.+.|++++++++...+..
T Consensus 229 ~~~~-~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 305 (399)
T 2oga_A 229 PELA-ERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPD 305 (399)
T ss_dssp HHHH-HHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTT
T ss_pred HHHH-HHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCC
Confidence 4332 21111111100000000000111011233333333322 33456777888899999999999877776543322
Q ss_pred ce-E-EEEEecCCCCCCHHHHHHHHHHHHhccCceeccc
Q 014163 373 VP-L-VAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 373 ~~-~-v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
.+ + +.|.+.. .+..++.+.|. ++|+.++..
T Consensus 306 ~~~~~~~~~~~~---~~~~~l~~~L~----~~gI~v~~~ 337 (399)
T 2oga_A 306 TDPVWHLFTVRT---ERRDELRSHLD----ARGIDTLTH 337 (399)
T ss_dssp EECCCSSEEEEC---SSHHHHHHHHH----HTTBCCBCS
T ss_pred CcceeEEEEEEC---CCHHHHHHHHH----HCCCceecC
Confidence 22 2 2344432 24566777776 899998754
No 129
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.90 E-value=7.4e-23 Score=202.50 Aligned_cols=320 Identities=10% Similarity=-0.012 Sum_probs=210.2
Q ss_pred Ccccccccc-CCC-hHHH--HHHHHHHcCc-CCCCCccChhhHHHHHHHHHHHHHhh-CCCCCCCCCCC---ceEeCCch
Q 014163 57 RLNLASFVT-TWM-EPEC--DKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAV---GVGTVGSS 127 (429)
Q Consensus 57 ~~~~~~~~~-~~~-~~~~--~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~---~~~t~g~t 127 (429)
.++|..+.+ ... +|.+ .+++...+.. ....|....+..++++.+.+++.+.. +++. .. +.+|+|++
T Consensus 49 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-----~~~~~i~~t~g~~ 123 (430)
T 2x5f_A 49 TYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSI-----DNMSRPIVTNALT 123 (430)
T ss_dssp SEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCG-----GGBCCCEEESHHH
T ss_pred cEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCC-----CccceEEEcCCch
Confidence 345666665 332 3334 4554444443 23345444567888888777776653 3332 24 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHh-cCceeEEEeccCCccccCHHHHHHHhhh---CC
Q 014163 128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARY-FEVELKEVKLEEGYYVMNPVKAVELVDE---NT 203 (429)
Q Consensus 128 ~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~-~G~~v~~v~~~~~~~~~d~~~l~~~i~~---~~ 203 (429)
+|+.+++.++.+ .+++|+++.++|..+...++. .|++++.+|++++++.+|+++|++++++ ++
T Consensus 124 ~al~~~~~~l~~-------------~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 190 (430)
T 2x5f_A 124 HGLSLVGDLFVN-------------QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDK 190 (430)
T ss_dssp HHHHHHHHHHCC-------------TTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHhC-------------CCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCC
Confidence 999999988753 136899999999999999999 9999999998763378999999999988 78
Q ss_pred eEEEEeeCCCccccccC---hHHHHHHHHH-----hhhccCCCccEEeecccccccccccCCC-Cc-c-cc-CCCCe---
Q 014163 204 ICVAAILGSTLTGEFED---VKLLHDLLTK-----KNEETGWDTPIHVDAASGGFIAPFLYPD-LE-W-DF-RLPLV--- 268 (429)
Q Consensus 204 ~~v~~~~~~~~tG~~~~---l~~I~~la~~-----~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~-~-~~-~~~~~--- 268 (429)
++|++++|+||||.+.+ +++|+++|++ + ++++++|++|+.+.. .... .. . .+ .....
T Consensus 191 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 262 (430)
T 2x5f_A 191 VIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGT------KVIAVVDDAYYGLFY--EDVYTQSLFTALTNLHSNAIL 262 (430)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTC------EEEEEEECTTTTCBC--SSSCCSCHHHHHHTTCCTTEE
T ss_pred EEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccC------CEEEEEehhcccccC--CcccchHHHHHHhhccCCcce
Confidence 99999999999999987 8999999999 9 999999999987532 1110 11 1 22 11233
Q ss_pred eEEEEcCcccCC-CCCCeEEEEEe--CCCCcccccccccCC-CCCCCCCceeccCCchhHHHHHHHHHH-HcC-HHHHHH
Q 014163 269 KSINVSGHKYGL-VYAGVGWVVWR--TKDDLPDELVFHINY-LGSDQPTFTLNFSKGSSQIIAQYYQFI-RLG-FEGYKN 342 (429)
Q Consensus 269 d~~~~s~hK~~~-~p~g~g~l~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~tr~~~~~~~~~~al~-~l~-~~g~~~ 342 (429)
+.+..+.+|+++ ++.++|++++. +++.. +.+...... .... . ++.+.....++..+++ ... .+.+++
T Consensus 263 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~-~~l~~~~~~~~~~~--~----~~~~~~~~~a~~~~l~~~~~~~~~~~~ 335 (430)
T 2x5f_A 263 PIRLDGATKEFFAWGFRVGFMTFGTSDQTTK-EVLEAKVKGLIRSN--I----SSGPLPTQSAVKHVLKNNKQFDKEIEQ 335 (430)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEEEBCCCHHHH-HHHHHHHHHHHHTT--T----SSCCHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCeEEEEEecCCHHHH-HHHHHHHhhhhhcc--c----CCCChHHHHHHHHHHccChHHHHHHHH
Confidence 666788999885 66778999871 22222 222111110 0000 0 1222222333333333 210 122344
Q ss_pred HHHHHHHHHHHHHHHHH----hCCCeEEeeCCCCce-EEEEEecCCCCCCHHHHHHHHHHHHhc-cCceecccCCCCCCC
Q 014163 343 IMENCMGNARALREGLE----KTGRFEILSKDVGVP-LVAFSLKDSSAHTVFEISEGLRKKLNR-FQVVYPQKLPMSYPW 416 (429)
Q Consensus 343 ~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~-~v~f~~~~~~~~~~~~~~~~L~~~l~~-~G~~~~~~~~~~~~~ 416 (429)
..++..++++++.+.|+ +.+ +++..+ ..+ ++.+.++ +.+..++.+.|. + +|+.+.+. +
T Consensus 336 ~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~--~~g~~~~~~~~---~~~~~~~~~~l~----~~~gi~v~~g------~ 399 (430)
T 2x5f_A 336 NIQTLKERYEVTKEVVYADQYHSH-WQAYDF--NSGYFMAIKVH---DVDPEALRKHLI----DKYSIGVIAL------N 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGTTT-EEECCC--CBSSEEEEEES---SSCHHHHHHHHH----HHHCEECEEC------S
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCC-ceeeCC--CceEEEEeCCC---CCCHHHHHHHHH----HhCCEEEecC------C
Confidence 77888889999999998 554 777643 344 4666664 356777887777 7 89997642 3
Q ss_pred ceEEEEEec
Q 014163 417 STKLRVISH 425 (429)
Q Consensus 417 ~~~lRi~~~ 425 (429)
..++|++++
T Consensus 400 ~~~iRis~~ 408 (430)
T 2x5f_A 400 ATDIRIAFS 408 (430)
T ss_dssp SSEEEEEGG
T ss_pred CCeEEEEEe
Confidence 457999997
No 130
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.90 E-value=1.2e-21 Score=191.20 Aligned_cols=302 Identities=11% Similarity=0.026 Sum_probs=194.3
Q ss_pred CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
..++.+.+++...+.... +...+...++| +.+++++|.+. .+++++||+|+.+++.+++...
T Consensus 12 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~----~~la~~~~~~~-------~i~~~sGt~a~~~al~~~~~~~----- 73 (390)
T 3b8x_A 12 TWDDLEYKAIQSVLDSKM--FTMGEYVKQYE----TQFAKTFGSKY-------AVMVSSGSTANLLMIAALFFTK----- 73 (390)
T ss_dssp CCCHHHHHHHHHHHHHTC--CSSCHHHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTSSS-----
T ss_pred CCCHHHHHHHHHHHHcCC--CCCChHHHHHH----HHHHHHHCCCc-------EEEECCHHHHHHHHHHHHHhhh-----
Confidence 345667777777765432 33445555555 45788888863 7899999999999988762100
Q ss_pred hcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHH
Q 014163 147 EQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 226 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~ 226 (429)
..+. ..+++|+++.++|.++..+++..|++++.+|++++++.+|+++|+++++++|++|++++ ++|...|+++|.+
T Consensus 74 ~~~~-~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~ 149 (390)
T 3b8x_A 74 KPRL-KKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINK 149 (390)
T ss_dssp SCSC-CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHH
T ss_pred hcCC-CCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHH
Confidence 0000 02368999999999999999999999999999865588999999999998898888763 6788899999999
Q ss_pred HHHHhhhccCCCccEEeecccccccccccCCCCccccC-CCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccC
Q 014163 227 LLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305 (429)
Q Consensus 227 la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~ 305 (429)
+|+++ |+++|+|++|+.+... .. . .++ ...+.++++.+.|.+.+|.| |+++.+++... +.+.....
T Consensus 150 l~~~~------~~~li~D~a~~~g~~~--~~--~-~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~-~~~~~~~~ 216 (390)
T 3b8x_A 150 IIGGR------DIILLEDNCESMGATF--NN--K-CAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIY-HILLCIRA 216 (390)
T ss_dssp HHTTS------CCEEEEECTTCTTCEE--TT--E-ETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHH-HHHHHHTB
T ss_pred HHHHc------CCEEEEECcCcccCEE--CC--c-ccccccceEEEEccCCCCCccCCc-eEEEeCCHHHH-HHHHHHHh
Confidence 99999 9999999999854331 11 1 111 12344555444444555666 88776543221 11111000
Q ss_pred CC--CC-----------------CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014163 306 YL--GS-----------------DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (429)
Q Consensus 306 ~~--~~-----------------~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 366 (429)
+. .. ....+...|.+.....+..++++..+ +.+++..++..++++++.+.|++++++++
T Consensus 217 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~ 294 (390)
T 3b8x_A 217 HGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDV 294 (390)
T ss_dssp TTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEE
T ss_pred cCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 00 00 00000111222112333444444433 56788889999999999999999988887
Q ss_pred eeCCCCce--EEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc
Q 014163 367 LSKDVGVP--LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 367 ~~~~~~~~--~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
..++...+ .+.+.+.+..+.+.+++.+.|. ++||.++.+
T Consensus 295 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~----~~gI~v~~~ 335 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKDSGVIRKQLVENLN----SAGIECRPI 335 (390)
T ss_dssp CCCCSBCCCCEEEEEECTTSCCCHHHHHHHHH----HTTBCCBCS
T ss_pred CCCCCCcccEEEEEEecCcCcccHHHHHHHHH----HCCCCeeee
Confidence 65422233 3455554222356677777777 899998865
No 131
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.90 E-value=1.3e-22 Score=199.76 Aligned_cols=334 Identities=13% Similarity=0.040 Sum_probs=206.0
Q ss_pred CCCccccccccCCCh---HHHHHHHHHHcCcCC-----CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCc
Q 014163 55 NPRLNLASFVTTWME---PECDKLVMASINKNY-----VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126 (429)
Q Consensus 55 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~ 126 (429)
...++|+.+.|...+ +.+.+++...+.++. ..|....+..++++++.+++.+.+|.+.+. ..+++|+|+
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEP---QNIALTNGS 107 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCG---GGEEEESCH
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCc---ccEEEeCCc
Confidence 344678888876643 335666666554331 245566678899999999998888876432 248999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEc-CCCchHHHHHHHh----cCceeEEEeccCC--ccccCHHHHHHHh
Q 014163 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTG-ANVQVCWEKFARY----FEVELKEVKLEEG--YYVMNPVKAVELV 199 (429)
Q Consensus 127 t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~-~~~h~s~~~~~~~----~G~~v~~v~~~~~--~~~~d~~~l~~~i 199 (429)
++|+.+++.++... |.+.+..+|+++ .++|..+...+.. .+..+..++++.+ ++.+|+++|+ +
T Consensus 108 t~al~~~~~~l~~~--------gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 177 (417)
T 3g7q_A 108 QSAFFYLFNLFAGR--------RADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--I 177 (417)
T ss_dssp HHHHHHHHHHHSBC------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--C
T ss_pred HHHHHHHHHHHcCC--------CccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--c
Confidence 99999999987541 110111278887 8888887765532 2333444444322 3678999998 7
Q ss_pred hhCCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCc
Q 014163 200 DENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH 276 (429)
Q Consensus 200 ~~~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~h 276 (429)
++++++|++++++||||.+.+ +++|+++|++| |+++|+|++|+.+.......... ....+.+.+..+.+
T Consensus 178 ~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~------~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~s 249 (417)
T 3g7q_A 178 GEETGMICVSRPTNPTGNVITDEELMKLDRLANQH------NIPLVIDNAYGVPFPGIIFSEAR--PLWNPNIILCMSLS 249 (417)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTCCBCSCCC--CCCCTTEEEEEESG
T ss_pred ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc------CCEEEEeCCCccccccccccccc--cCCCCCEEEEEech
Confidence 788999999999999999977 89999999999 99999999998532111100110 11234677788889
Q ss_pred ccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHH-HHHH-HHHHHHHHHHHH
Q 014163 277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE-GYKN-IMENCMGNARAL 354 (429)
Q Consensus 277 K~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~-g~~~-~~~~~~~~~~~l 354 (429)
|+++++.++|+++.+. + +.+.+........ .+.+.....++...++..... ...+ +.++..++++++
T Consensus 250 K~~~~G~r~G~~~~~~-~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 318 (417)
T 3g7q_A 250 KLGLPGSRCGIIIAND-K-TITAIANMNGIIS---------LAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQT 318 (417)
T ss_dssp GGTCTTSCCEEEECCH-H-HHHHHHHHHHHHC---------CCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHH
T ss_pred hccCCCcceEEEEeCH-H-HHHHHHHhhccee---------eCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 9988888999987532 2 2222211111010 011112222233333332211 1222 455667788888
Q ss_pred HHHHHh-CCC--eEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc--CCCCCCC-----ceEEEEEe
Q 014163 355 REGLEK-TGR--FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK--LPMSYPW-----STKLRVIS 424 (429)
Q Consensus 355 ~~~L~~-~~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~--~~~~~~~-----~~~lRi~~ 424 (429)
.+.|.+ +++ +.+..+. ...++.+.++. .+.+..++.+.|. ++|+.+.+. +.....+ ..++|+++
T Consensus 319 ~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~l~~~l~----~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~ 392 (417)
T 3g7q_A 319 IAIIRRYLSEERCLIHKPE-GAIFLWLWFKD-LPITTELLYQRLK----ARGVLMVPGHYFFPGLDKPWPHTHQCMRMNY 392 (417)
T ss_dssp HHHHHHHCCTTTCEEECCC-BSSEEEEECTT-CSSCHHHHHHHHH----HTTEECEEGGGGCTTBSSCCGGGGGEEEEES
T ss_pred HHHHHHhcccCCceeeCCC-cceEEEEEcCC-CCCCHHHHHHHHH----HCCEEEECchhhCCCCccccccCCCeEEEEe
Confidence 888876 443 6665443 34455566542 1457778888877 899998764 1211111 56899998
Q ss_pred cc
Q 014163 425 HL 426 (429)
Q Consensus 425 ~~ 426 (429)
+.
T Consensus 393 ~~ 394 (417)
T 3g7q_A 393 VP 394 (417)
T ss_dssp CS
T ss_pred cC
Confidence 74
No 132
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.90 E-value=7.4e-22 Score=194.99 Aligned_cols=300 Identities=13% Similarity=0.041 Sum_probs=197.3
Q ss_pred ccccccCCCh-HHHHHHHHHHcCcCCCCCcc-ChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH
Q 014163 60 LASFVTTWME-PECDKLVMASINKNYVDMDE-YPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF 137 (429)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~ 137 (429)
|..+.|+.+. +.+.+++.+.+..+. |.. .++..+++ +.+++++|.+. +++|+|+++|+.+++.++
T Consensus 21 l~~~~p~~~~p~~~~~a~~~~~~~~~--y~~~~~~~~~l~----~~la~~~~~~~-------v~~~~ggt~al~~~l~~l 87 (424)
T 2po3_A 21 LLVGRPNRIDRARLYERLDRALDSQW--LSNGGPLVREFE----ERVAGLAGVRH-------AVATCNATAGLQLLAHAA 87 (424)
T ss_dssp EETTCCCCCCHHHHHHHHHHHHHHTC--CSSSCHHHHHHH----HHHHHHHTSSE-------EEEESCHHHHHHHHHHHH
T ss_pred ccccCCCCCChHHHHHHHHHHHhcCC--cccCCHHHHHHH----HHHHHHhCCCe-------EEEeCCHHHHHHHHHHHc
Confidence 5556666544 457788777775532 333 45555555 45777788753 899999999999999887
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcccc
Q 014163 138 KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGE 217 (429)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~ 217 (429)
.. +++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|++++ ++|.
T Consensus 88 ~~--------------gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~ 150 (424)
T 2po3_A 88 GL--------------TGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGR 150 (424)
T ss_dssp TC--------------CSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGC
T ss_pred CC--------------CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCC
Confidence 31 268999999999999999999999999999864588999999999998888887754 7999
Q ss_pred ccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcC--cccCCCCCCeEEEEEeCCCC
Q 014163 218 FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSG--HKYGLVYAGVGWVVWRTKDD 295 (429)
Q Consensus 218 ~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~--hK~~~~p~g~g~l~~~~~~~ 295 (429)
..++++|.++|+++ ++++|+|++|+.+.. +. .. .+. ...|+++.+. +|++.+ .++|+++.++++.
T Consensus 151 ~~~l~~i~~la~~~------~~~li~Dea~~~g~~-~~-~~---~~~-~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l 217 (424)
T 2po3_A 151 PCAADQLRKVADEH------GLRLYFDAAHALGCA-VD-GR---PAG-SLGDAEVFSFHATKAVNA-FEGGAVVTDDADL 217 (424)
T ss_dssp CCCHHHHHHHHHHT------TCEEEEECTTCTTCE-ET-TE---ETT-SSSSEEEEECCTTSSSCC-SSCEEEEESCHHH
T ss_pred cCCHHHHHHHHHHc------CCEEEEECccccCCe-EC-Ce---ecc-cccCEEEEeCCCCCCccC-CCCeEEEeCCHHH
Confidence 99999999999999 999999999984322 11 11 111 1134555554 587755 6778887753332
Q ss_pred cccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCC---
Q 014163 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG--- 372 (429)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--- 372 (429)
. +.+.....+...........|.......+....++.. .+++++..++..++++++.+.|++++++++..++..
T Consensus 218 ~-~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 294 (424)
T 2po3_A 218 A-ARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLN 294 (424)
T ss_dssp H-HHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCC
T ss_pred H-HHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcc
Confidence 2 2221111111100000000111111122233333322 356778888889999999999999877888753211
Q ss_pred -ceEEEEEecCC-CCCCHHHHHHHHHHHHhccCceeccc
Q 014163 373 -VPLVAFSLKDS-SAHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 373 -~~~v~f~~~~~-~~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
..++.+.+++. .+.+..++.+.|. ++|+.+..+
T Consensus 295 ~~~~~~i~~~~~~~~~~~~~l~~~L~----~~gI~v~~~ 329 (424)
T 2po3_A 295 NHQYVIVEIDEATTGIHRDLVMEVLK----AEGVHTRAY 329 (424)
T ss_dssp CCCCEEEEECHHHHSSCHHHHHHHHH----HTTEECBCT
T ss_pred ccEEEEEEECCccchhhHHHHHHHHH----HCCCceecc
Confidence 24565666420 0245667777776 899998764
No 133
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.90 E-value=4.4e-22 Score=194.35 Aligned_cols=289 Identities=13% Similarity=0.065 Sum_probs=192.6
Q ss_pred HHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 014163 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ 148 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~~~~~~~~ 148 (429)
+.+.+++.+.+..... ...+...+++ +.+++++|.+. +++|+||++|+.+++.++ ..
T Consensus 20 ~~~~~a~~~~~~~~~~--~~~~~~~~l~----~~la~~~~~~~-------~~~~~~gt~al~~~~~~~~~~--------- 77 (393)
T 1mdo_A 20 AEELAAVKTVLDSGWI--TTGPKNQELE----AAFCRLTGNQY-------AVAVSSATAGMHIALMALGIG--------- 77 (393)
T ss_dssp HHHHHHHHHHHHHTCC--SSSHHHHHHH----HHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhcCCc--CCChHHHHHH----HHHHHHhCCCc-------EEEecChHHHHHHHHHHcCCC---------
Confidence 5566777777655432 2344555444 55788888753 889999999999998887 32
Q ss_pred CCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHH
Q 014163 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 228 (429)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la 228 (429)
.+++|+++.++|.++..+++..|++++.+|++++++.+|+++|++++++++++|+++ +++|.+.++++|.++|
T Consensus 78 ----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~~~~i~~l~ 150 (393)
T 1mdo_A 78 ----EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPV---HYAGAPADLDAIYALG 150 (393)
T ss_dssp ----TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCCHHHHHHHH
T ss_pred ----CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCCHHHHHHHH
Confidence 236899999999999999999999999999986557899999999999888887664 4799999999999999
Q ss_pred HHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCc--ccCCCCCCeEEEEEeCCCCcccccccccCC
Q 014163 229 TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH--KYGLVYAGVGWVVWRTKDDLPDELVFHINY 306 (429)
Q Consensus 229 ~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~h--K~~~~p~g~g~l~~~~~~~~~~~~~~~~~~ 306 (429)
+++ |+++|+|++|+.+.. ... . .++. .|++++|+| |++.++ ..|+++.++++.. +.+......
T Consensus 151 ~~~------~~~li~D~a~~~g~~--~~~--~-~~~~--~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~-~~l~~~~~~ 215 (393)
T 1mdo_A 151 ERY------GIPVIEDAAHATGTS--YKG--R-HIGA--RGTAIFSFHAIKNITCA-EGGIVVTDNPQFA-DKLRSLKFH 215 (393)
T ss_dssp HHH------TCCBCEECTTCTTCE--ETT--E-ETTS--SSEEEEECCTTSSSCSS-SCEEEEESCHHHH-HHHHHHTBT
T ss_pred HHc------CCeEEEECccccCCe--ECC--e-ecCC--CCeEEEeCCCCCccccc-cceEEEeCCHHHH-HHHHHHHhc
Confidence 999 999999999985432 111 1 1111 788889988 988654 5688776543322 211111010
Q ss_pred CC----------CCCCCce--eccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC----
Q 014163 307 LG----------SDQPTFT--LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD---- 370 (429)
Q Consensus 307 ~~----------~~~~~~~--~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---- 370 (429)
.. .....+. ..|+......+....++.. .+++++..++.+++++++.+.|++++ +++...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~ 292 (393)
T 1mdo_A 216 GLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ--LQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEH 292 (393)
T ss_dssp TEECC-----------CCEESSCCCBCCCCHHHHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCE
T ss_pred CCcccchhhhcccccccccccccCccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCC
Confidence 00 0000000 0111000122222222222 24577888888899999999999988 8876422
Q ss_pred -CCceEEEEEecCC-CCCCHHHHHHHHHHHHhccCceeccc
Q 014163 371 -VGVPLVAFSLKDS-SAHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 371 -~~~~~v~f~~~~~-~~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
....++.+++++. .+.+..++.+.|. ++|+.++..
T Consensus 293 ~~~~~~~~v~~~~~~~~~~~~~l~~~l~----~~gi~v~~~ 329 (393)
T 1mdo_A 293 IHAWHLFIIRVDEARCGITRDALMASLK----TKGIGTGLH 329 (393)
T ss_dssp ECCCSCEEEECCHHHHSSCHHHHHHHHH----HTTBCCBCC
T ss_pred CceeEEEEEEecccccccCHHHHHHHHH----hCCCCcccc
Confidence 1234677776420 0245667777777 899988764
No 134
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.90 E-value=4.1e-22 Score=197.98 Aligned_cols=335 Identities=13% Similarity=0.051 Sum_probs=208.0
Q ss_pred CCc-cccccccCCChH---HHHHHHHHHcCc-------C-----CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 014163 56 PRL-NLASFVTTWMEP---ECDKLVMASINK-------N-----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV 119 (429)
Q Consensus 56 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~-------~-----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~ 119 (429)
..+ +|+.+.|..+++ .+.+++...+.. . ...|....+..++++++.+++.+.+|.+.+. ..
T Consensus 32 ~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~---~~ 108 (444)
T 3if2_A 32 QPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS---EN 108 (444)
T ss_dssp SCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG---GG
T ss_pred hhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH---HH
Confidence 346 678887766432 355666665544 2 1235555678899999999998888876432 24
Q ss_pred ceEeCCchHHHHHHHHHHHHHHHHHHHhcCC-----CCCCc----EEEEc-CCCchHHHHH------HHhcCceeEEEec
Q 014163 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK-----PYDKP----NIVTG-ANVQVCWEKF------ARYFEVELKEVKL 183 (429)
Q Consensus 120 ~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~-----~~~~~----~vi~~-~~~h~s~~~~------~~~~G~~v~~v~~ 183 (429)
+++|+|+++|+.+++.++.. +|. ...++ +|+++ .++|..+... ....|..+..+++
T Consensus 109 i~~t~G~t~al~~~~~~l~~--------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLFGG--------AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTH 180 (444)
T ss_dssp EEEESSHHHHHHHHHHHSSE--------EEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEE
T ss_pred EEEecCcHHHHHHHHHHHhC--------CCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccc
Confidence 89999999999999888753 110 00001 57775 7788777653 2345677777887
Q ss_pred cCC----ccccCHHHHHHH---hhhCCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeeccccccccc
Q 014163 184 EEG----YYVMNPVKAVEL---VDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP 253 (429)
Q Consensus 184 ~~~----~~~~d~~~l~~~---i~~~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~ 253 (429)
+++ ++.+|+++|+++ +++++++|++++++||||.+.+ +++|+++|++| |+++|+|++|+.+...
T Consensus 181 ~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~------~~~li~De~~~~~~~~ 254 (444)
T 3if2_A 181 DGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY------DIPLIIDNAYGMPFPN 254 (444)
T ss_dssp TTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCCEEEECTTCTTTTC
T ss_pred ccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC------CCEEEEECCCCCcccc
Confidence 642 247999999998 6778999999999999999988 88999999999 9999999999853211
Q ss_pred ccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHH
Q 014163 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~ 333 (429)
...... .....+.+.+..+.+|+++++.++|+++.+. + +...+........ .+.+.....++...++
T Consensus 255 ~~~~~~--~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~-l~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~ 321 (444)
T 3if2_A 255 IIYSDA--HLNWDNNTILCFSLSKIGLPGMRTGIIVADA-K-VIEAVSAMNAVVN---------LAPTRFGAAIATPLVA 321 (444)
T ss_dssp CBCSCC--CCCCCTTEEEEEESTTTTCGGGCCEEEECCH-H-HHHHHHHHHHHHH---------SSCCCHHHHHHHHHHH
T ss_pred cccccc--cccCCCCEEEEechhhccCCCCceEEEEECH-H-HHHHHHHHHHhcc---------CCCChHHHHHHHHHHH
Confidence 110010 0112356788889999988888999887532 2 2222111111000 0111122222222232
Q ss_pred HcCH-HHHHH-HHHHHHHHHHHHHHHHHh-CCC--eEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecc
Q 014163 334 RLGF-EGYKN-IMENCMGNARALREGLEK-TGR--FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 334 ~l~~-~g~~~-~~~~~~~~~~~l~~~L~~-~~~--~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~ 408 (429)
.... ....+ ..++..++++++.+.|.+ +++ +.+..+. ...++.+.++.. +.+..++.+.|. ++|+.+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~~~~~~~~~-~~~~~~l~~~l~----~~gi~v~~ 395 (444)
T 3if2_A 322 NDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE-GAIFLWLWFKDL-PISTLDLYERLK----AKGTLIVP 395 (444)
T ss_dssp TSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC-BSSEEEEEETTC-SSCHHHHHHHHH----HTTEECEE
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC-ccEEEEEEcCCC-CCCHHHHHHHHH----HCCeEEec
Confidence 2111 11122 445566677777777765 443 5555433 444555666431 457778888877 89999876
Q ss_pred c--CCCCC------CCceEEEEEecc
Q 014163 409 K--LPMSY------PWSTKLRVISHL 426 (429)
Q Consensus 409 ~--~~~~~------~~~~~lRi~~~~ 426 (429)
. +.... ....++|++++.
T Consensus 396 g~~~~~~~~~~~~~~~~~~iRis~~~ 421 (444)
T 3if2_A 396 SEYFFPGVDVSDYQHAHECIRMSIAA 421 (444)
T ss_dssp GGGSCTTCCCTTCSGGGSEEEEESSS
T ss_pred chhhcCCCCCcccccCCCeEEEEEeC
Confidence 5 11111 123679999875
No 135
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.90 E-value=2.1e-22 Score=198.14 Aligned_cols=320 Identities=13% Similarity=0.043 Sum_probs=207.9
Q ss_pred CCCcccccccc-----CC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 55 NPRLNLASFVT-----TW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 55 ~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
...++|+.+.+ ++ +++.+.+++..........|....+..++++++.+++....+.+. ...+++|+|+++
T Consensus 37 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~----~~~i~~t~g~~~ 112 (413)
T 3t18_A 37 EAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEG----YISAIATPGGTG 112 (413)
T ss_dssp GGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHHH
T ss_pred cceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccc----cCcEEEcCccHH
Confidence 34456666664 33 445677776654332333455566788899998888877665431 124899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh----CCe
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NTI 204 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~----~~~ 204 (429)
|+..++.++.+ .+++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++ +++
T Consensus 113 al~~~~~~~~~-------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 179 (413)
T 3t18_A 113 AIRSAIFSYLD-------------EGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDR 179 (413)
T ss_dssp HHHHHHHHHCC-------------SSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHhcC-------------CCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCC
Confidence 99999887754 2368999999999999999999999999998543478999999999986 677
Q ss_pred -EEEEeeC-CCccccccChHHHH---HHHH------HhhhccCCCccEEeecccccccccccCCCCc---ccc-CC-CCe
Q 014163 205 -CVAAILG-STLTGEFEDVKLLH---DLLT------KKNEETGWDTPIHVDAASGGFIAPFLYPDLE---WDF-RL-PLV 268 (429)
Q Consensus 205 -~v~~~~~-~~~tG~~~~l~~I~---~la~------~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~---~~~-~~-~~~ 268 (429)
++++++| +||||.+.+.+++. ++|+ +| ++++++|++|.++.. ...... ... .. ++.
T Consensus 180 ~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~~ 251 (413)
T 3t18_A 180 IASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDK------KITLIVDVAYLEFAG--DGDQQRKFFEKFSNLPRNL 251 (413)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTC------EEEEEEECTTGGGSS--SSSTTTGGGGGGTTCCTTE
T ss_pred EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCC------cEEEEEecccccccC--ChhhHHHHHHHHhhcCCCe
Confidence 7778888 99999997766555 5555 88 999999999976432 111110 011 11 112
Q ss_pred -eEEEEcCcccCC-CCCCeEEEEEe--CCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHH------
Q 014163 269 -KSINVSGHKYGL-VYAGVGWVVWR--TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE------ 338 (429)
Q Consensus 269 -d~~~~s~hK~~~-~p~g~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~------ 338 (429)
..+..+.+|.++ ++.++|+++.. +++.. +.+.....+.. .++......+++.++...+...
T Consensus 252 ~~i~~~S~sK~~~~~G~riG~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 322 (413)
T 3t18_A 252 FVVVAFSMSKSHTAYGLRSGAAVGISSSKEII-EEFEASLAHSA--------RCNWSNGTHAAQNILIELERAENKKIYE 322 (413)
T ss_dssp EEEEEEEHHHHTTCGGGCCEEEEEEESCHHHH-HHHHHHHHHHH--------HHHTSSCCHHHHHHHHHTTSHHHHHHHH
T ss_pred eEEEEEecCccCCCcCcCcEEEEEecCCHHHH-HHHHHHHHHhh--------hccccCCChHHHHHHHHHhcChHHHHHH
Confidence 256668899766 77889998862 32222 22211111000 0000012334455555555432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCc
Q 014163 339 -GYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWS 417 (429)
Q Consensus 339 -g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~ 417 (429)
..+++.++..++++++.+.|++++ +++..+ ..+++.|.- ..+..++.+.|. ++|+.+.+ +.
T Consensus 323 ~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~--~~~~~~~~~----~~~~~~~~~~l~----~~gv~v~~-------g~ 384 (413)
T 3t18_A 323 QELVDLRNMLKSRADVFVTAAKENK-LTMIPY--FGGFFTFIP----TDKAFDIVKDLE----KENIFTIP-------SA 384 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CCCBCC--CSSSCEEEE----CSCHHHHHHHHH----HTTEECEE-------CS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CCccCC--CceEEEEeC----CCCHHHHHHHHH----hCCEEEec-------CC
Confidence 234556777889999999999884 776543 344433321 125567777776 89999764 24
Q ss_pred eEEEEEecc
Q 014163 418 TKLRVISHL 426 (429)
Q Consensus 418 ~~lRi~~~~ 426 (429)
.++|++++.
T Consensus 385 ~~iRis~~~ 393 (413)
T 3t18_A 385 KGIRVAICG 393 (413)
T ss_dssp SEEEECTTT
T ss_pred CceEEEEee
Confidence 569999864
No 136
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=200.75 Aligned_cols=302 Identities=10% Similarity=-0.000 Sum_probs=198.0
Q ss_pred CCCccChhhHHHHHHHHHHHHHhhC-CCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCC
Q 014163 85 VDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV 163 (429)
Q Consensus 85 ~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~ 163 (429)
..|....+..++++++.+++++..| ++.+. ..+++|+|+++++.+++.++.+. |. ..++.|+++.+.
T Consensus 123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~---~~i~~t~G~~~ai~~~~~~l~~~--------gd-~~~d~Vlv~~p~ 190 (498)
T 3ihj_A 123 GSYSASQGVNCIREDVAAYITRRDGGVPADP---DNIYLTTGASDGISTILKILVSG--------GG-KSRTGVMIPIPQ 190 (498)
T ss_dssp -----CCSCHHHHHHHHHHHHHHTTTCCCCG---GGEEEESSHHHHHHHHHHHHCCC--------CG-GGSEEEEEEESC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCc---ccEEEcCCHHHHHHHHHHHHcCC--------CC-CCCCEEEEeCCC
Confidence 4466677888999999999998885 65422 24899999999999998877541 10 012489999999
Q ss_pred chHHHHHHHhcCceeEEEeccCC-ccccCHHHHHHHhhh-----CCeEEEEeeCCCccccc---cChHHHHHHHHHhhhc
Q 014163 164 QVCWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDE-----NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEE 234 (429)
Q Consensus 164 h~s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~ 234 (429)
|.++..+++..|++++.++++++ +|.+|+++|++++++ ++++|++++++||||.+ +++++|+++|++|
T Consensus 191 y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~--- 267 (498)
T 3ihj_A 191 YPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE--- 267 (498)
T ss_dssp CTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH---
T ss_pred chhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc---
Confidence 99999999999999999998743 478999999999987 58999999999999998 4577899999999
Q ss_pred cCCCccEEeecccccccccccCCCCcccc-C----C-----CCee-EEEEcCcccCC--CCCCeEEEEE--eCCCCcccc
Q 014163 235 TGWDTPIHVDAASGGFIAPFLYPDLEWDF-R----L-----PLVK-SINVSGHKYGL--VYAGVGWVVW--RTKDDLPDE 299 (429)
Q Consensus 235 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~----~-----~~~d-~~~~s~hK~~~--~p~g~g~l~~--~~~~~~~~~ 299 (429)
++++++|++|+.+.. ........+ . . ..+. .+..|.+|.+. ++.++||+++ .+++ +.+.
T Consensus 268 ---~~~li~De~y~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~-l~~~ 341 (498)
T 3ihj_A 268 ---KLFLLADEVYQDNVY--SPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE-IKGQ 341 (498)
T ss_dssp ---TCEEEEECTTTTCBC--CTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHH-HHHH
T ss_pred ---CcEEEEEcCcccccc--CCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHH-HHHH
Confidence 999999999987542 111011111 0 0 1122 34457889763 7889999875 2322 2222
Q ss_pred cccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH------------HHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Q 014163 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF------------EGYKNIMENCMGNARALREGLEKTGRFEIL 367 (429)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~------------~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 367 (429)
+..... .. .+ .....+.+....+.. ...+++.++..++++++.+.|++++++++.
T Consensus 342 l~~~~~-~~---------~~---~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 408 (498)
T 3ihj_A 342 LVKLLS-VR---------LC---PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN 408 (498)
T ss_dssp HHHHHH-HS---------CC---CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC
T ss_pred HHHHHh-cc---------CC---CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEec
Confidence 111100 00 01 122233333333321 123556678889999999999999888876
Q ss_pred eCCCCceEEEE-EecCC---------CCCCHHHH--HHHHHHHHhccCceecccC-CCCCCCceEEEEEecc
Q 014163 368 SKDVGVPLVAF-SLKDS---------SAHTVFEI--SEGLRKKLNRFQVVYPQKL-PMSYPWSTKLRVISHL 426 (429)
Q Consensus 368 ~~~~~~~~v~f-~~~~~---------~~~~~~~~--~~~L~~~l~~~G~~~~~~~-~~~~~~~~~lRi~~~~ 426 (429)
.+ ..++++| ++..+ .+.+.+++ .+.|. ++|+.+.+.. .....+...+|+|+..
T Consensus 409 ~p--~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~----~~gI~v~pG~~f~~~~~~~~~Ris~~~ 474 (498)
T 3ihj_A 409 PL--QGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLE----ETGICVVPGSGFGQREGTYHFRMTILP 474 (498)
T ss_dssp CC--CBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHH----HHCBCCEEGGGTCCCTTCCBEEEECCS
T ss_pred CC--CeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHH----HCCEEEEeCcccCCCCCCCEEEEEeCC
Confidence 43 4565555 44311 02344443 23334 7899987762 2222456679999963
No 137
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.89 E-value=2.6e-22 Score=198.00 Aligned_cols=322 Identities=11% Similarity=0.001 Sum_probs=204.9
Q ss_pred CCcccccc---ccCC---ChHHHHHHHHHHcCcC-CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 56 PRLNLASF---VTTW---MEPECDKLVMASINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 56 ~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
..++|+.+ .+.+ +.+.+.+++...+..+ ...|....+..++++++.+++....+.+.+. +...+++|+|+++
T Consensus 50 ~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAA-GRVVTAQALGGTG 128 (420)
T ss_dssp SCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCcccccc-CceEEEECCccHH
Confidence 34667777 3433 2367888888877653 3346666688888888877776544421010 1013899999999
Q ss_pred HHHHHHHHH--HHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEec-cCCccccCHHHHHHHhh---hC
Q 014163 129 AIMLAGLAF--KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVD---EN 202 (429)
Q Consensus 129 a~~~al~a~--~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~l~~~i~---~~ 202 (429)
|+.+++..+ .+ .+++|+++.++|.++...++..|++++.+|+ +++++.+|+++|++.++ ++
T Consensus 129 al~~~~~~~~~~~-------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 195 (420)
T 4f4e_A 129 ALKIGADFLRTLN-------------PKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPG 195 (420)
T ss_dssp HHHHHHHHHHHHC-------------TTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhC-------------CCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCCC
Confidence 999885432 22 2368999999999999999999999999998 34448899999999998 57
Q ss_pred CeEEEEeeCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc---c-CCCCeeEEEEcC
Q 014163 203 TICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD---F-RLPLVKSINVSG 275 (429)
Q Consensus 203 ~~~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~---~-~~~~~d~~~~s~ 275 (429)
++++++++++||||.+ +++++|+++|++| |+++++|++|+++.. -....... + .....+.+..|.
T Consensus 196 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~ 267 (420)
T 4f4e_A 196 TIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR------RLVPFLDIAYQGFGE--SIEADAAAVRLFAAANLNVFVSSSF 267 (420)
T ss_dssp CEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSS--CTTGGGHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CcEEEEccccccccC--CcchhhHHHHHHHhcCCCEEEEEeC
Confidence 8899999999999998 4577999999999 999999999987542 11000001 1 123456777788
Q ss_pred cccCC-CCCCeEEEEEeCC-CCccccc-ccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-----HHHHHHHHHHH
Q 014163 276 HKYGL-VYAGVGWVVWRTK-DDLPDEL-VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-----FEGYKNIMENC 347 (429)
Q Consensus 276 hK~~~-~p~g~g~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-----~~g~~~~~~~~ 347 (429)
+|.++ +++++|++++... ..+...+ ........... .+.+.....+....+.... .+.++++.++.
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 341 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNY------SNPPTHGGAIVAAVLASPELRASWVQELGEMRDRI 341 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTT------SSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhccc------CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 89776 6788999875221 1111100 00000000000 0111112222222222110 24467788889
Q ss_pred HHHHHHHHHHHHhC---CCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 348 MGNARALREGLEKT---GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 348 ~~~~~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.++++++.+.|+++ +++.+..+ ..++++|. +.+...+.+.|. ++|+.+.+. .|+++
T Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~--~~g~~~~~-----~~~~~~~~~~l~----~~gI~v~~~----------~Ris~ 400 (420)
T 4f4e_A 342 RAMRNGLVERLKAAGIERDFSFINA--QRGMFSYS-----GLTSAQVDRLRE----EFGIYAVST----------GRICV 400 (420)
T ss_dssp HHHHHHHHHHHHHTTCSSCCTHHHH--SCSSEEEC-----CCCHHHHHHHHH----HHCEECCTT----------SEEEG
T ss_pred HHHHHHHHHHHHhcCCCCCceeECC--CccEEEEe-----CCCHHHHHHHHH----hCCEEecCC----------CeEEE
Confidence 99999999999987 34555433 34445442 223345555555 889987631 28888
Q ss_pred cc
Q 014163 425 HL 426 (429)
Q Consensus 425 ~~ 426 (429)
+.
T Consensus 401 ~~ 402 (420)
T 4f4e_A 401 AA 402 (420)
T ss_dssp GG
T ss_pred ec
Confidence 63
No 138
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.89 E-value=3.7e-21 Score=189.25 Aligned_cols=257 Identities=18% Similarity=0.086 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH----HH
Q 014163 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----AR 172 (429)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~~ 172 (429)
.+++++++++++|.+. +++|+||++|+..++.++.. .+++|+++.+.|.+.... ++
T Consensus 58 ~~~l~~~la~~~g~~~-------~~~~~~gt~a~~~al~~l~~-------------~gd~vi~~~~~~~~~~~~~~~~~~ 117 (412)
T 2cb1_A 58 AKALEERLKALEGALE-------AVVLASGQAATFAALLALLR-------------PGDEVVAAKGLFGQTIGLFGQVLS 117 (412)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCC-------------TTCEEEEETTCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchhHHHHHHHHHH
Confidence 4466677899999863 88999999999999887633 136899999999875554 45
Q ss_pred hcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccc
Q 014163 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (429)
Q Consensus 173 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~ 252 (429)
..|++++.++. |+++|+++++++|++|++++++|++|.+.|+++|+++|++| |+++|+|++|+.+..
T Consensus 118 ~~g~~~~~~~~-------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~------~~~li~D~~~~~~~~ 184 (412)
T 2cb1_A 118 LMGVTVRYVDP-------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEA------GVALVVDNTFGAAGA 184 (412)
T ss_dssp TTTCEEEEECS-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGTTTT
T ss_pred HcCCEEEEECC-------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 57998888875 38999999999999999999999999999999999999999 999999999986511
Q ss_pred cccCCCCccccCCCCeeEEEEcCcccCCCCCC-eEEEEEeCCCCccc-ccccccCCCCCC---------C-----CCc--
Q 014163 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG-VGWVVWRTKDDLPD-ELVFHINYLGSD---------Q-----PTF-- 314 (429)
Q Consensus 253 ~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g-~g~l~~~~~~~~~~-~~~~~~~~~~~~---------~-----~~~-- 314 (429)
... ... .++|+++.|.||++++|.+ +|++++.++..... ..........+. . ...
T Consensus 185 --~~~--~~~---~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~ 257 (412)
T 2cb1_A 185 --LCR--PLA---WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL 257 (412)
T ss_dssp --SCC--GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT
T ss_pred --cCC--ccc---cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH
Confidence 111 111 2589999999999977665 78888766432100 000000000000 0 000
Q ss_pred eeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC----------------CCceEEEE
Q 014163 315 TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD----------------VGVPLVAF 378 (429)
Q Consensus 315 ~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~~~~v~f 378 (429)
...|.. ......+..+..+ +.+.++.++..++++++.+.|.+.+++..+..+ ...++++|
T Consensus 258 ~~~g~~--~~~~~a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~ 333 (412)
T 2cb1_A 258 SLCGMA--LSPFNAYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTL 333 (412)
T ss_dssp TTTCCC--CCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEE
T ss_pred HhcCCC--CChHHhHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEE
Confidence 000111 1223334333332 345667777888999999999999888755322 13568999
Q ss_pred EecCCCCCCHHHHHHHHHHHHhccCcee
Q 014163 379 SLKDSSAHTVFEISEGLRKKLNRFQVVY 406 (429)
Q Consensus 379 ~~~~~~~~~~~~~~~~L~~~l~~~G~~~ 406 (429)
.+ + +..++.+.|. +.|+.+
T Consensus 334 ~~-~----~~~~~~~~l~----~~~i~~ 352 (412)
T 2cb1_A 334 DL-G----DLERASRFLG----AIRLLK 352 (412)
T ss_dssp EC-S----SHHHHHHHHH----HCSSEE
T ss_pred Ee-C----CHHHHHHHHH----hCCeee
Confidence 88 4 3345555555 778876
No 139
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.89 E-value=4.7e-23 Score=197.82 Aligned_cols=304 Identities=16% Similarity=0.130 Sum_probs=189.6
Q ss_pred ccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHH
Q 014163 60 LASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR 139 (429)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~ 139 (429)
|......++++.+.+++...... ...|...+...+++ +++++++|.+. .++++||++|+.+++.++.+
T Consensus 8 ~~~~~~~~p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~----~~la~~~g~~~-------~~~~~~gt~a~~~~~~~~~~ 75 (347)
T 1jg8_A 8 LRSDTVTKPTEEMRKAMAQAEVG-DDVYGEDPTINELE----RLAAETFGKEA-------ALFVPSGTMGNQVSIMAHTQ 75 (347)
T ss_dssp CSCGGGCCCCHHHHHHHHTCCCC-CGGGTCCHHHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCC
T ss_pred eccccCCCCCHHHHHHHhcCCCC-CcccCCChHHHHHH----HHHHHHhCCce-------EEEecCcHHHHHHHHHHhcC
Confidence 44444445667788877654321 12244455555555 56888888853 78899999999888876543
Q ss_pred HHHHHHHhcCCCCCCcEEEEcCCCchHHHH---HHHhcCceeEEEeccCCccccCHHHHHHHhhh------CCeEEEEee
Q 014163 140 KWQQKRKEQGKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDE------NTICVAAIL 210 (429)
Q Consensus 140 ~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~ 210 (429)
.+++|++++++|.+... ++...|++++.+ .+++ +.+|+++|++++++ +|++|++++
T Consensus 76 -------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~-~~~d~~~l~~~i~~~~~~~~~~~~v~~~~ 140 (347)
T 1jg8_A 76 -------------RGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKN-GAMDPDDVRKAIRPRNIHFPRTSLIAIEN 140 (347)
T ss_dssp -------------TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEET-TEECHHHHHHHSCCSCTTSCCEEEEEEES
T ss_pred -------------CCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCC-CccCHHHHHHHhccccccccCceEEEEec
Confidence 23689999999986432 567789998888 4443 77999999999985 589999999
Q ss_pred CCCcc-ccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeE
Q 014163 211 GSTLT-GEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG 286 (429)
Q Consensus 211 ~~~~t-G~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g 286 (429)
++||| |.+.| +++|+++|+++ |+++|+|++|..+...+..... ..+. .++|.++++.||++++|. |
T Consensus 141 ~~npt~G~~~~~~~l~~i~~~a~~~------~~~li~D~a~~~~~~~~~~~~~-~~~~-~~~d~~~~s~sK~l~~~~--G 210 (347)
T 1jg8_A 141 THNRSGGRVVPLENIKEICTIAKEH------GINVHIDGARIFNASIASGVPV-KEYA-GYADSVMFCLSKGLCAPV--G 210 (347)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHH------TCEEEEEETTHHHHHHHHCCCH-HHHH-HTCSEEEEESSSTTCCSS--C
T ss_pred cccccCCccCcHHHHHHHHHHHHHC------CCEEEeehhhhhcchhhcCCCh-HHhc-ccccEEEEecccccCCCc--e
Confidence 99999 99855 57889999999 9999999997532111111110 0111 247888889999987764 4
Q ss_pred EEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 014163 287 WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEI 366 (429)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~ 366 (429)
++++.+++.. +.+.......++.. ............+++... +.+++..++++++.+.|+++ ++++
T Consensus 211 ~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~-~~~~ 276 (347)
T 1jg8_A 211 SVVVGDRDFI-ERARKARKMLGGGM-------RQAGVLAAAGIIALTKMV-----DRLKEDHENARFLALKLKEI-GYSV 276 (347)
T ss_dssp EEEEECHHHH-HHHHHHHHHHTCCC-------SSTHHHHHHHHHHHHHSS-----TTHHHHHHHHHHHHHHHHHH-TCBC
T ss_pred EEEEcCHHHH-HHHHHHHHHcCCch-------hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhc-Ccee
Confidence 3343343222 21111111111110 111111122222333221 12333446778888999887 4665
Q ss_pred eeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 367 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 367 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
...+...+++.++++. .+.+..++.+.|. ++|+.++.+ +...+|++++
T Consensus 277 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~----~~gi~v~~~------~~~~iRl~~~ 324 (347)
T 1jg8_A 277 NPEDVKTNMVILRTDN-LKVNAHGFIEALR----NSGVLANAV------SDTEIRLVTH 324 (347)
T ss_dssp CGGGCCSSEEEEECTT-SSSCHHHHHHHHH----HHTEECEEE------ETTEEEEECC
T ss_pred ccCCCcceEEEEEccc-ccCCHHHHHHHHH----HCCCEEecC------CCCeEEEEeC
Confidence 3222356777777642 1356777888877 889988753 1346999985
No 140
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.89 E-value=2.5e-22 Score=194.54 Aligned_cols=288 Identities=11% Similarity=0.042 Sum_probs=186.9
Q ss_pred HHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 014163 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG 149 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g 149 (429)
+.+.+++.+.+.... +...+...++| +.+++++|.+. +++++|||+|+..++.++...
T Consensus 16 ~~v~~a~~~~~~~~~--~~~~~~~~~l~----~~la~~~~~~~-------~~~~~sGt~al~~al~~~~~~--------- 73 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQ--YILGPEVTELE----DRLADFVGAKY-------CISCANGTDALQIVQMALGVG--------- 73 (367)
T ss_dssp HHHHHHHHHHHHHCC--CSSCHHHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhcCC--ccCChHHHHHH----HHHHHHhCCCc-------EEEeCCHHHHHHHHHHHhCCC---------
Confidence 456677766665443 33455655555 45788888863 899999999999999887311
Q ss_pred CCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHH
Q 014163 150 KPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT 229 (429)
Q Consensus 150 ~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~ 229 (429)
.+++|+++.++|.++..+++..|++++.++++++++.+|+++|++++++++++|+ ++|++|...|+++|.++|+
T Consensus 74 ---~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~ 147 (367)
T 3nyt_A 74 ---PGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIAS 147 (367)
T ss_dssp ---TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred ---CcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHH
Confidence 2368999999999999999999999999999876689999999999998888775 7789999999999999999
Q ss_pred HhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEc--CcccCCCCCCeEEEEEeCCCCcccccccccCCC
Q 014163 230 KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS--GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYL 307 (429)
Q Consensus 230 ~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s--~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~ 307 (429)
++ |+++|+|++|+.+.. .... ..+..+ |.+++| +||+++++...|+++.++++.. +.+.....+.
T Consensus 148 ~~------~~~li~D~a~~~g~~--~~~~---~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~-~~~~~~~~~g 214 (367)
T 3nyt_A 148 KY------GIPVIEDAAQSFGAS--YKGK---RSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDELA-TAIRQIARHG 214 (367)
T ss_dssp HT------TCCBEEECTTTTTCE--ETTE---ETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCHHHH-HHHHHHTBTT
T ss_pred Hc------CCEEEEECccccCCe--ECCe---eccCCC-CEEEEECCCCCcCCCcCceeEEEeCCHHHH-HHHHHHHhcC
Confidence 99 999999999975432 1111 111111 555555 6999866233566666443221 2111111110
Q ss_pred CCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC----CceEEEEEecCC
Q 014163 308 GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----GVPLVAFSLKDS 383 (429)
Q Consensus 308 ~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~~~~v~f~~~~~ 383 (429)
..........|.......+.+.+++..+ +.+++..++.+++++++.+.|++++ +.+...+. ...++.+...
T Consensus 215 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 289 (367)
T 3nyt_A 215 QDRRYHHIRVGVNSRLDTLQAAILLPKL--EIFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVYAQYTVRMD-- 289 (367)
T ss_dssp EEETTEECSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCCSSEEEECS--
T ss_pred CCcCceeeccCcCCCccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceeeEEEEEEeC--
Confidence 0000000000111112222333333222 4457778888999999999999986 55443221 1223444432
Q ss_pred CCCCHHHHHHHHHHHHhccCceecccC
Q 014163 384 SAHTVFEISEGLRKKLNRFQVVYPQKL 410 (429)
Q Consensus 384 ~~~~~~~~~~~L~~~l~~~G~~~~~~~ 410 (429)
+.+++.+.|. ++||.++.++
T Consensus 290 ---~~~~l~~~L~----~~GI~~~~~~ 309 (367)
T 3nyt_A 290 ---NRESVQASLK----AAGVPTAVHY 309 (367)
T ss_dssp ---SHHHHHHHHH----HHTCCCBCSC
T ss_pred ---CHHHHHHHHH----HCCCceeccC
Confidence 4556666666 8999887653
No 141
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.89 E-value=1.5e-22 Score=199.47 Aligned_cols=320 Identities=12% Similarity=-0.013 Sum_probs=206.3
Q ss_pred CCCCcccccccc-----CC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCch
Q 014163 54 GNPRLNLASFVT-----TW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS 127 (429)
Q Consensus 54 ~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t 127 (429)
+...++|+.+.| ++ +++.+.+++..........|....+..++++++.+++....+.+. ...+++|+|++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~----~~~i~~t~g~~ 112 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG----HIRSIATAGGT 112 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS----EEEEEEESHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc----cccEEECCchH
Confidence 345566777754 33 345677776554433333455566788999998888877666441 01389999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh----CC
Q 014163 128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE----NT 203 (429)
Q Consensus 128 ~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~----~~ 203 (429)
+|+..++.++.+ .+++|+++.++|..+...++..|++++.+|++++++.+|+++|++++++ ++
T Consensus 113 ~al~~~~~~l~~-------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 113 GGIHHLIHNYTE-------------PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHHHHHHSC-------------TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcC-------------CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCC
Confidence 999999888754 2368999999999999999999999999998644478999999999986 66
Q ss_pred e-EEEEeeC-CCccccccChHHH---HHHHH------HhhhccCCCccEEeecccccccccccCC---CCcccc-CC-CC
Q 014163 204 I-CVAAILG-STLTGEFEDVKLL---HDLLT------KKNEETGWDTPIHVDAASGGFIAPFLYP---DLEWDF-RL-PL 267 (429)
Q Consensus 204 ~-~v~~~~~-~~~tG~~~~l~~I---~~la~------~~~~~~~~~~~l~vD~a~~~~~~~~~~~---~~~~~~-~~-~~ 267 (429)
+ ++++++| +||||.+.+.+++ +++|+ +| ++++++|++|.++.. ... ...... .. ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~ 251 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN------NVIIGIDVAYLDYSG--EKDEVRAFFNKFSHLPKE 251 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC------EEEEEEECTTGGGSS--CHHHHHGGGGGGTTCCTT
T ss_pred CEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC------CeEEEEecccccccC--ChHHHHHHHHHHHhcCCC
Confidence 6 7788889 9999999775555 45555 78 999999999976431 100 000011 11 11
Q ss_pred e-eEEEEcCcccC-CCCCCeEEEEEe--CCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHH-----
Q 014163 268 V-KSINVSGHKYG-LVYAGVGWVVWR--TKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE----- 338 (429)
Q Consensus 268 ~-d~~~~s~hK~~-~~p~g~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~----- 338 (429)
. ..+..+.+|.+ +++.++|+++.. +++.. +.+.....+... ++......+++.++...+...
T Consensus 252 ~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~l~~~~~~~~ 322 (418)
T 3rq1_A 252 ILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIA-DEFFEVNKSTSR--------ATWSNICRPAMRTMANIVADPAKFKE 322 (418)
T ss_dssp EEEEEEEESTTTTTCCSSCCEEEEEEESSHHHH-HHHHHHHHHHHH--------HHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred ceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHH-HHHHHHHHHHHh--------hccCCCchHHHHHHHHHhCCHHHHHH
Confidence 1 36667889966 477889998862 33222 222111111000 000012233344444444321
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCC
Q 014163 339 ---GYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYP 415 (429)
Q Consensus 339 ---g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~ 415 (429)
..+++.++..++++++.+.|++++ +++..+ ..+++.|.-. .+..++.+.|. ++|+.+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~----~~~~~~~~~l~----~~gi~v~~g------ 385 (418)
T 3rq1_A 323 YEAERNCYYQLIRDRADIFKQEAAQVG-LPMLPY--RGGFFITIPT----DSANAICEELK----KEHIYVIAL------ 385 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCC--CSSSEEEEEC----TTHHHHHHHHH----HTTEECEEC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCC--CceEEEEcCC----CCHHHHHHHHH----hCCEEEecC------
Confidence 233556777888999999999884 776543 3454444211 24567777666 899997642
Q ss_pred CceEEEEEec
Q 014163 416 WSTKLRVISH 425 (429)
Q Consensus 416 ~~~~lRi~~~ 425 (429)
...+|++++
T Consensus 386 -~~~iRis~~ 394 (418)
T 3rq1_A 386 -ANGIRIAAC 394 (418)
T ss_dssp -SSEEEEEGG
T ss_pred -CCCeEEEEe
Confidence 345999986
No 142
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.89 E-value=1.7e-22 Score=194.80 Aligned_cols=284 Identities=12% Similarity=0.031 Sum_probs=181.0
Q ss_pred cChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHH
Q 014163 89 EYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE 168 (429)
Q Consensus 89 ~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~ 168 (429)
..+...+++ +++++++|.+. .+++++|++|+.+++.++..+. ++++|++++..|++..
T Consensus 45 ~~~~~~~l~----~~la~~~~~~~-------~i~~~~G~~a~~~al~~~~~~g-----------d~~~vi~~~~~~~~~~ 102 (357)
T 3lws_A 45 TGAIIEPFE----QKFADVLGMDD-------AVFFPSGTMAQQVALRIWSDET-----------DNRTVAYHPLCHLEIH 102 (357)
T ss_dssp EETTHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHHH-----------TCCEEEECTTCHHHHS
T ss_pred CChHHHHHH----HHHHHHhCCCc-------EEEecCcHHHHHHHHHHHhhcC-----------CCcEEEecccceeeee
Confidence 335555555 55888888853 5777899999999988876631 1127888888887654
Q ss_pred H---HHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcc-cccc---ChHHHHHHHHHhhhccCCCccE
Q 014163 169 K---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFE---DVKLLHDLLTKKNEETGWDTPI 241 (429)
Q Consensus 169 ~---~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t-G~~~---~l~~I~~la~~~~~~~~~~~~l 241 (429)
. .+...|++++.++.+ ++.+|+++|+++. ++++|+++.++||+ |.+. ++++|+++|++| |+++
T Consensus 103 ~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~------~~~l 172 (357)
T 3lws_A 103 EQDGLKELHPIETILVGAA--DRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER------GIRL 172 (357)
T ss_dssp STTHHHHHSSCEEEECSCT--TSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT------TCEE
T ss_pred ccchhhhccCcEEEEecCC--CCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc------CCEE
Confidence 4 345668888777743 3679999999984 38999999999998 8875 489999999999 9999
Q ss_pred EeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCc
Q 014163 242 HVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKG 321 (429)
Q Consensus 242 ~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~ 321 (429)
|+|++|......+..... ..+. ..+|.++.+.||++.+|.| |+++.+ ++.. +.+.......+.... +.
T Consensus 173 i~D~a~~~~~~~~~~~~~-~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~-~~~~-~~~~~~~~~~~~~~~------~~- 240 (357)
T 3lws_A 173 HLDGARLFEMLPYYEKTA-AEIA-GLFDSIYISFYKGLGGIAG-AILAGP-AAFC-QTARIWKRRYGGDLI------SL- 240 (357)
T ss_dssp EEEETTHHHHHHHHTCCH-HHHH-TTSSEEEEESSSTTCCSSC-EEEEEC-HHHH-HHHHHHHHHTTCCCS------CC-
T ss_pred EEECchhhhhhhhcCCCh-HHHH-hcCCEEEEeccccCCCCce-EEEEcC-HHHH-HHHHHHHHHhcCCcc------cc-
Confidence 999998632211111111 1111 3478889999999877877 876653 3222 222111111111100 01
Q ss_pred hhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhc
Q 014163 322 SSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR 401 (429)
Q Consensus 322 ~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~ 401 (429)
.....+...+++. ..+.+++..++++++.+.|++++++++...++..+++.++++.....+..++.+.|. +
T Consensus 241 ~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ 311 (357)
T 3lws_A 241 YPYIVSADYYYEL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQE----E 311 (357)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHH----H
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHH----h
Confidence 1111222233322 233345567788999999999988988533336778888875421012344555555 9
Q ss_pred cCceecccCCCCCCCceEEEEEecc
Q 014163 402 FQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 402 ~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
+|+.+++..... ++..++|++++.
T Consensus 312 ~Gi~v~~g~~~~-~~~~~~r~~i~~ 335 (357)
T 3lws_A 312 TGLGFVGYLVDK-DGYCSTEISVGD 335 (357)
T ss_dssp HCEESCSCCEEC-SSEEEEEEEBCT
T ss_pred cCeEEecccccC-CCceEEEEEecc
Confidence 999987652111 566789999864
No 143
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.89 E-value=1.1e-21 Score=193.03 Aligned_cols=311 Identities=14% Similarity=0.080 Sum_probs=196.5
Q ss_pred ChHHHHHHHHHHcCcCC--C-----CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINKNY--V-----DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~ 140 (429)
.+|.+.+++.+.+.... + .+........+++.+++++++++|++.. .+++++|++|+..++.++..
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------~v~~~sGs~a~~~a~~~~~~- 114 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA------NVQPHSGSQANFAVYTALLQ- 114 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE------ECCCSSHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc------eeEecCcHHHHHHHHHHhcC-
Confidence 46788888877764322 1 1112223456777788999999999642 33345568999988887643
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCCchHHH---HHHHhcCceeE--EEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCCc
Q 014163 141 WQQKRKEQGKPYDKPNIVTGANVQVCWE---KFARYFEVELK--EVKLEEGYYVMNPVKAVELVDE-NTICVAAILGSTL 214 (429)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s~~---~~~~~~G~~v~--~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~ 214 (429)
.++.|+++.++|.++. ......|.+++ .++.++ ++.+|+++|++++++ ++++|+++.++++
T Consensus 115 ------------~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~v~~~~~~~~ 181 (420)
T 3gbx_A 115 ------------PGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMIIGGFSAYS 181 (420)
T ss_dssp ------------TTCEEEEEEEC------------CHHHHSEEEEEEECT-TCSCCHHHHHHHHHHHCCSEEEECCTTCC
T ss_pred ------------CCCEEEecchhhcceeccchhhhhcccceeEEeccCCc-cCCcCHHHHHHHHHhcCCeEEEEecCccC
Confidence 2368999999998733 22234454444 445554 478999999999987 5899888887764
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCC-
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK- 293 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~- 293 (429)
...|+++|.++|++| |+++|+|++|+.+.. ........ ...+|+++.+.||++++|.| |+++.++.
T Consensus 182 --~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~~~~~~~~--~~~~di~~~s~sK~~~g~~g-g~~~~~~~~ 248 (420)
T 3gbx_A 182 --GVVDWAKMREIADSI------GAYLFVDMAHVAGLI--AAGVYPNP--VPHAHVVTTTTHKTLAGPRG-GLILAKGGD 248 (420)
T ss_dssp --SCCCHHHHHHHHHHT------TCEEEEECTTTHHHH--HTTSSCCS--TTTSSEEEEESSGGGCSCSC-EEEEESSCC
T ss_pred --CccCHHHHHHHHHHc------CCEEEEECCcchhce--ecccCCcc--cccCCEEEeecccCCCCCCc-eEEEEcCCc
Confidence 578899999999999 999999999864432 11111111 23489999999999876665 88776541
Q ss_pred CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCc
Q 014163 294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGV 373 (429)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 373 (429)
..+...+.. ..+.. ..++.+.....++.+++.....++++++.++..++++++.+.|.+.+ ++++.++...
T Consensus 249 ~~~~~~~~~-~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~ 319 (420)
T 3gbx_A 249 EELYKKLNS-AVFPS-------AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVVSGGTEN 319 (420)
T ss_dssp HHHHHHHHH-HHC-----------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSS
T ss_pred HHHHHHhhh-hcCCC-------CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-CeeccCCCCC
Confidence 011111111 01110 01333334455555566555556778899999999999999999864 8887543356
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCC---CCCCceEEEEEec
Q 014163 374 PLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPM---SYPWSTKLRVISH 425 (429)
Q Consensus 374 ~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~---~~~~~~~lRi~~~ 425 (429)
+++.+.+.+. +.+...+.+.|. ++|+.+... .+. ...+...+|+++.
T Consensus 320 ~~~~~~~~~~-~~~~~~~~~~l~----~~gi~v~~~~~~~~~~~~~~~~~iRi~~~ 370 (420)
T 3gbx_A 320 HLFLLDLVDK-NLTGKEADAALG----RANITVNKNSVPNDPKSPFVTSGIRIGSP 370 (420)
T ss_dssp SEEEEECGGG-TCCHHHHHHHHH----HTTEECEEECCTTCSSCTTTCSEEEEECH
T ss_pred eEEEEEcCCC-CCCHHHHHHHHH----HCCcEeccccCCCCccccCCCcceEEecc
Confidence 6777776532 356667777776 899998763 221 1123345999874
No 144
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.89 E-value=2e-21 Score=191.57 Aligned_cols=310 Identities=12% Similarity=0.102 Sum_probs=193.3
Q ss_pred ChHHHHHHHHHHcCcCCC-CC------ccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINKNYV-DM------DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRK 140 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~ 140 (429)
.+|.+.+++.+.+...+. .+ ........+++.+++++++++|.+. ..++++||++|+..++.++..
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~v~~~~Gs~a~~~al~~~~~- 116 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGH------ANVQPHSGAQANGAVMLALAK- 116 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCC------ceeecCchHHHHHHHHHHccC-
Confidence 367888888877743221 11 1111223555556688999999874 134588999999988887743
Q ss_pred HHHHHHhcCCCCCCcEEEEcCCCchH-HHHH--HHhcCceeE--EEeccCCccccCHHHHHHHhh-hCCeEEEEeeCCCc
Q 014163 141 WQQKRKEQGKPYDKPNIVTGANVQVC-WEKF--ARYFEVELK--EVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTL 214 (429)
Q Consensus 141 ~~~~~~~~g~~~~~~~vi~~~~~h~s-~~~~--~~~~G~~v~--~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~ 214 (429)
.+++|++++++|.+ +... ....|..++ .++.+++++.+|+++|+++++ .++++|++++++|
T Consensus 117 ------------~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~- 183 (425)
T 3ecd_A 117 ------------PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY- 183 (425)
T ss_dssp ------------TTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC-
T ss_pred ------------CCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC-
Confidence 23689999999987 2222 224565444 555554457899999999997 5889998887766
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCC
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~ 294 (429)
|...++++|.++|++| |+++|+|++|+.+.. ........ ...+|+++.+.||++.+| +.|+++.+++.
T Consensus 184 -~~~~~l~~i~~l~~~~------~~~li~De~~~~g~~--~~~~~~~~--~~~~di~~~s~sK~l~g~-~~g~~~~~~~~ 251 (425)
T 3ecd_A 184 -PRKLDFARFRAIADSV------GAKLMVDMAHIAGVI--AAGRHANP--VEHAHVVTSTTHKTLRGP-RGGFVLTNDEE 251 (425)
T ss_dssp -CSCCCHHHHHHHHHHH------TCEEEEECGGGHHHH--HTTSSCCG--GGTCSEEEEESSGGGCCC-SCEEEEESCHH
T ss_pred -CCcCCHHHHHHHHHHc------CCEEEEECcChHhhh--hcccccCc--hhcCcEEEecCCcccCCC-CcEEEEeCCHH
Confidence 6788999999999999 999999999754332 11111111 123789999999998555 46888765432
Q ss_pred CcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce
Q 014163 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (429)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 374 (429)
+...+.. ..+.+ ..++.......++.+++.....+++++..++..++++++.+.|.+.+ ++++.+....+
T Consensus 252 -~~~~~~~-~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 321 (425)
T 3ecd_A 252 -IAKKINS-AVFPG-------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNH 321 (425)
T ss_dssp -HHHHHHH-HHC------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred -HHHHHHh-hhCcc-------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCce
Confidence 2121111 01111 11233334455556666555556778899999999999999999965 88875433566
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCC---CCCceEEEEEe
Q 014163 375 LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMS---YPWSTKLRVIS 424 (429)
Q Consensus 375 ~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~---~~~~~~lRi~~ 424 (429)
++.+.+.+. +.+...+.+.|. ++|+.+... .|.. ......+|++.
T Consensus 322 ~~~~~~~~~-~~~~~~~~~~l~----~~gi~v~~~~~p~~~~~~~~~~~iRi~~ 370 (425)
T 3ecd_A 322 LLLVDLRPK-GLKGAQVEQALE----RAGITCNKNGIPFDPEKPTITSGIRLGT 370 (425)
T ss_dssp EEEEECGGG-TCCHHHHHHHHH----HTTEECEECCCTTCSSCTTTCSEEEEES
T ss_pred EEEEEeCCC-CCCHHHHHHHHH----HcCCEecccccCCCCCCCCCccceeccc
Confidence 777776532 346667777776 899998743 1221 12234699974
No 145
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.89 E-value=1.5e-21 Score=190.73 Aligned_cols=251 Identities=15% Similarity=0.009 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHH----H
Q 014163 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----R 172 (429)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~----~ 172 (429)
.+++++.+++++|.+. .++++||++|+..++.++.. .++.|+++.+.|.+....+ +
T Consensus 68 ~~~l~~~la~~~g~~~-------~~~~~sGt~A~~~al~~~~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~ 127 (392)
T 3qhx_A 68 RTALEAALAAVEDAAF-------GRAFSSGMAAADCALRAMLR-------------PGDHVVIPDDAYGGTFRLIDKVFT 127 (392)
T ss_dssp HHHHHHHHHHHTTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEeCCCcchHHHHHHHHHH
Confidence 3456667899999863 88999999999999887743 2368999999998765554 6
Q ss_pred hcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccc
Q 014163 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (429)
Q Consensus 173 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~ 252 (429)
..|++++.++.+ |+++|++++++++++|++.+++|++|.+.|+++|+++|+++ |+++|+|++|+.+..
T Consensus 128 ~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~------g~~li~D~~~~~~~~ 195 (392)
T 3qhx_A 128 GWNVEYTPVALA------DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADS------SAKVLVDNTFASPAL 195 (392)
T ss_dssp GGTCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred hcCcEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 679999888763 89999999999999999999999999999999999999999 999999999975421
Q ss_pred cccCCCCccccCCCCeeEEEEcCcccCCCCC--CeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHH
Q 014163 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 253 ~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~--g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
.. ... .++|.++.|.||+++++. ..|+++.++++.. ..+....... +.. ...+.+|.
T Consensus 196 ---~~--~~~---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~-~~l~~~~~~~----------g~~--~~~~~~~~ 254 (392)
T 3qhx_A 196 ---QQ--PLS---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELD-QSFAFLQNGA----------GAV--PGPFDAYL 254 (392)
T ss_dssp ---CC--GGG---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH-HHHHHHHHHH----------CCC--CCHHHHHH
T ss_pred ---CC--hHH---hCCcEEEEcCccccCCCCCceEEEEEECcHHHH-HHHHHHHHhc----------CCC--CCHHHHHH
Confidence 11 111 258999999999987663 3788877543222 2111111111 111 12334555
Q ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC----------------CceEEEEEecCCCCCCHHHHHHH
Q 014163 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----------------GVPLVAFSLKDSSAHTVFEISEG 394 (429)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~~~~~ 394 (429)
++..+ +.+..++++..++++++.+.|++.+.+..+..+. ..++++|.+++. .+-.+.
T Consensus 255 ~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~ 327 (392)
T 3qhx_A 255 TMRGL--KTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-----RTAAEQ 327 (392)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-----HHHHHH
T ss_pred HHhhh--hHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-----HHHHHH
Confidence 55443 3356677888899999999999998776543321 145889998642 233455
Q ss_pred HHHHHhccCceec
Q 014163 395 LRKKLNRFQVVYP 407 (429)
Q Consensus 395 L~~~l~~~G~~~~ 407 (429)
+.++|...|+.++
T Consensus 328 ~~~~l~~~~~~~s 340 (392)
T 3qhx_A 328 LCAKTNIFILAES 340 (392)
T ss_dssp HHHHCSSSEECSC
T ss_pred HHHhCCCceECCC
Confidence 5555557776554
No 146
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.82 E-value=7.2e-25 Score=214.35 Aligned_cols=328 Identities=10% Similarity=-0.016 Sum_probs=216.4
Q ss_pred CCccccccccCC-ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHH
Q 014163 56 PRLNLASFVTTW-MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134 (429)
Q Consensus 56 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al 134 (429)
..++|+.+.+.. ++|.+.+++.+.+......|... ..++++++.+++++.+|.+.+. ..+.+|+|+++|+.+++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~---~~v~~~~g~~~a~~~~~ 106 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDK---EDIVFVEGVVPAISIAI 106 (392)
Confidence 445566666654 34568888877775543333322 6788888888888888854321 23889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc-CC-ccccCHHHHHHHhh-hCCeEEEEeeC
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EG-YYVMNPVKAVELVD-ENTICVAAILG 211 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~-~~~~d~~~l~~~i~-~~~~~v~~~~~ 211 (429)
.++..+ +++|+++.++|.++...++..|++++.+|.+ ++ ++.+|+++|+++++ .++++|+++++
T Consensus 107 ~~~~~~-------------gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~ 173 (392)
T 3b1d_A 107 QAFTKE-------------GEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNP 173 (392)
Confidence 887542 2579999999999999999999999999985 32 36799999999998 67888999999
Q ss_pred CCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc--cccCC--CCeeEEEEcCcccCC-CCC
Q 014163 212 STLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE--WDFRL--PLVKSINVSGHKYGL-VYA 283 (429)
Q Consensus 212 ~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~~~~--~~~d~~~~s~hK~~~-~p~ 283 (429)
+||+|.+.+ +++|+++|+++ ++++++|++|+++.. ...... ..+.. ...+.+..+.+|+++ ++.
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 245 (392)
T 3b1d_A 174 HNPGGRVWEREVLEQIGHLCQKH------HVILVSDEIHQDLTL--FGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGT 245 (392)
Confidence 999999854 99999999999 999999999987542 110000 01110 234566778899875 778
Q ss_pred CeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHh-
Q 014163 284 GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL--GFEGYKNIMENCMGNARALREGLEK- 360 (429)
Q Consensus 284 g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l--~~~g~~~~~~~~~~~~~~l~~~L~~- 360 (429)
++|++++++++.. +.+..... .+++ ++ ...+++.+++..+ +.+.+++..++..++++++.+.|++
T Consensus 246 r~G~~~~~~~~~~-~~~~~~~~-------~~~~-~~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 313 (392)
T 3b1d_A 246 KNSYAIIENPTLC-AQFKHQQL-------VNNH-HE---VSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQE 313 (392)
Confidence 8999887654332 22111110 0000 11 1222333333333 2345677778888999999999988
Q ss_pred CCCeEEeeCCCCceEEE-EEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEeccc
Q 014163 361 TGRFEILSKDVGVPLVA-FSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHLR 427 (429)
Q Consensus 361 ~~~~~~~~~~~~~~~v~-f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~~ 427 (429)
+|++++..+ ..+++. ++++.. +.+..++.+.|. .++|+.+.+.......+..++|++++..
T Consensus 314 ~~~~~~~~~--~~~~~~~i~~~~~-~~~~~~l~~~l~---~~~gi~v~~g~~f~~~~~~~iRi~~~~~ 375 (392)
T 3b1d_A 314 APRLKVMKP--QGTYLIWLDFSDY-GLTDDALFTLLH---DQAKVILNRGSDYGSEGELHARLNIAAP 375 (392)
Confidence 776776543 345544 455321 134445555553 1679998765211123456799998653
No 147
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.89 E-value=1.2e-21 Score=191.56 Aligned_cols=291 Identities=11% Similarity=0.027 Sum_probs=191.4
Q ss_pred HHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHH-HHHHHHHHHhc
Q 014163 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAF-KRKWQQKRKEQ 148 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~-~~~~~~~~~~~ 148 (429)
+++.+++.+.+..++.. ..++... ++++.+++++|.+. +++|+||++|+.+++.++ ..
T Consensus 12 ~~v~~a~~~~~~~~~~~-~~g~~~~----~l~~~la~~~~~~~-------v~~~~ggt~al~~~~~~l~~~--------- 70 (394)
T 1o69_A 12 GNELKYIEEVFKSNYIA-PLGEFVN----RFEQSVKDYSKSEN-------ALALNSATAALHLALRVAGVK--------- 70 (394)
T ss_dssp CCHHHHHHHHHHHTTTS-CTTHHHH----HHHHHHHHHHCCSE-------EEEESCHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHcCCcc-CCChHHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHcCCC---------
Confidence 45666666666543221 1123344 44556788888742 899999999999999887 32
Q ss_pred CCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh---CCeEEEEeeCCCccccccChHHHH
Q 014163 149 GKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFEDVKLLH 225 (429)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~I~ 225 (429)
.+++|+++.++|.++..+++..|++++.+|+++ ++.+|+++|++++++ ++++|++++ ++|...++++|.
T Consensus 71 ----~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~ 142 (394)
T 1o69_A 71 ----QDDIVLASSFTFIASVAPICYLKAKPVFIDCDE-TYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIV 142 (394)
T ss_dssp ----TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCT-TSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHH
T ss_pred ----CCCEEEECCCccHHHHHHHHHcCCEEEEEEeCC-CCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHH
Confidence 236899999999999999999999999999985 488999999999987 788888875 799999999999
Q ss_pred HHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccC
Q 014163 226 DLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305 (429)
Q Consensus 226 ~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~ 305 (429)
++|+++ |+++|+|++|+.+.. +. .. .. .....+|+++++.||.+ +|.++|++++++++.. +.+.....
T Consensus 143 ~l~~~~------~~~li~Dea~~~g~~-~~-~~-~~-~~~~~~~~~s~s~~K~l-~~~~~G~~~~~~~~l~-~~l~~~~~ 210 (394)
T 1o69_A 143 EICKEN------DIVLIEDAAEALGSF-YK-NK-AL-GTFGEFGVYSYNGNKII-TTSGGGMLIGKNKEKI-EKARFYST 210 (394)
T ss_dssp HHHHHT------TCEEEEECTTCTTCE-ET-TE-ET-TSSSSEEEEECCTTSSS-CCSSCEEEEESCHHHH-HHHHHHTB
T ss_pred HHHHHc------CCEEEEECcCcccce-eC-Cc-cc-ccccCcEEEEEeCCccC-CCCCceEEEECCHHHH-HHHHHHHH
Confidence 999999 999999999984322 11 11 00 01235899999999966 5678999988644322 22211111
Q ss_pred CCCCCCCCc--eeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC----CceEEEEE
Q 014163 306 YLGSDQPTF--TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----GVPLVAFS 379 (429)
Q Consensus 306 ~~~~~~~~~--~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~~~~v~f~ 379 (429)
+.......+ ...|.+.....+....++..+ +.+++..++..++++++.+.|+++ +++..+.. ...+++|.
T Consensus 211 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~ 286 (394)
T 1o69_A 211 QARENCLHYEHLDYGYNYRLSNVLGAIGVAQM--EVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTAL 286 (394)
T ss_dssp TCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEE
T ss_pred hccccCccccccccCcccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEE
Confidence 111000000 000111111222222333222 346778899999999999999987 66554321 12357777
Q ss_pred ecCCC-------------------CCCHHHHHHHHHHHHhccCceeccc
Q 014163 380 LKDSS-------------------AHTVFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 380 ~~~~~-------------------~~~~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
+++.. +.+..++.+.|. ++||.++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~gI~v~~~ 331 (394)
T 1o69_A 287 INFDKNELNACQKDINISQKNITLHPKISKLIEDLK----NKQIETRPL 331 (394)
T ss_dssp ESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH----HTTCCCBCC
T ss_pred ecchhhccccccccccccccccccccCHHHHHHHHH----HcCCccccc
Confidence 75210 124555666665 899998765
No 148
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.89 E-value=8e-22 Score=206.72 Aligned_cols=281 Identities=14% Similarity=0.061 Sum_probs=200.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCcee
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL 178 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v 178 (429)
+..+.+++++|.+. ...+++|+++||..++.++.. .++.|+++.+.|.++...+...|+++
T Consensus 209 ~~ee~la~l~G~d~------~i~~~~Gtt~a~~~~i~al~~-------------~GD~Vlv~~~~h~s~~~~~~~~G~~~ 269 (755)
T 2vyc_A 209 ESEKYAARVFGADR------SWSVVVGTSGSNRTIMQACMT-------------DNDVVVVDRNCHKSIEQGLMLTGAKP 269 (755)
T ss_dssp HHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCC-------------TTCEEEEESSCCHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHhCCCc------eEEECCcHHHHHHHHHHHhcC-------------CCCEEEECCCchHHHHHHHHHcCCEE
Confidence 55677999999864 256777888999988888754 23689999999999999999999999
Q ss_pred EEEeccCCc----ccc-----CHHHHHHHhhh--CCe--------EEEEeeCCCccccccChHHHHHHHHHhhhccCCCc
Q 014163 179 KEVKLEEGY----YVM-----NPVKAVELVDE--NTI--------CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239 (429)
Q Consensus 179 ~~v~~~~~~----~~~-----d~~~l~~~i~~--~~~--------~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~ 239 (429)
++++.+.++ +.+ |+++|+++|++ +++ +++++++ |++|.+.|+++|+++|++| ++
T Consensus 270 v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~------~~ 342 (755)
T 2vyc_A 270 VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKT------SD 342 (755)
T ss_dssp EEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTT------CS
T ss_pred EEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHc------CC
Confidence 999876432 235 99999999976 343 7888887 7899999999999999999 99
Q ss_pred cEEeecccccccccccCCCCccccCCCC--eeE------EEEcCcccCCCCCCeEEEEEeCCC-Ccc-cccccccCCCCC
Q 014163 240 PIHVDAASGGFIAPFLYPDLEWDFRLPL--VKS------INVSGHKYGLVYAGVGWVVWRTKD-DLP-DELVFHINYLGS 309 (429)
Q Consensus 240 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~--~d~------~~~s~hK~~~~p~g~g~l~~~~~~-~~~-~~~~~~~~~~~~ 309 (429)
++|+|+||+++.. +.+..+......+ +|+ ++.|+||++.++.++|++++++.. .+. ..+........
T Consensus 343 ~livDeA~~~~~~--~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~- 419 (755)
T 2vyc_A 343 RLHFDEAWYGYAR--FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHA- 419 (755)
T ss_dssp EEEEECTTCTTGG--GCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTS-
T ss_pred EEEEECcCchhcc--cCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhC-
Confidence 9999999976422 1111100000123 555 899999999888888998887651 110 11110001111
Q ss_pred CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCC---------eEEeeCCC---------
Q 014163 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR---------FEILSKDV--------- 371 (429)
Q Consensus 310 ~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~---------~~~~~~~~--------- 371 (429)
.+|++...+.++.++++.+..+|.++++++..++++++++.|+++++ ++++.+..
T Consensus 420 -------s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 420 -------TTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp -------CSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred -------CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 14555566777788888887775688999999999999999999877 77665421
Q ss_pred ---------------------------------------CceEEEEEecCC--------CCCCHHHHHHHHHHHHhccCc
Q 014163 372 ---------------------------------------GVPLVAFSLKDS--------SAHTVFEISEGLRKKLNRFQV 404 (429)
Q Consensus 372 ---------------------------------------~~~~v~f~~~~~--------~~~~~~~~~~~L~~~l~~~G~ 404 (429)
+...++|..++. .+++..++.+.|. ++||
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~----~~gI 568 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLG----RHGI 568 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHH----TTTC
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHH----HCCC
Confidence 113567776531 1466788998898 8998
Q ss_pred eecccCCCCCCCceEEEEEec
Q 014163 405 VYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.+.. .+.+.+|++++
T Consensus 569 ~~e~------~~~~~v~~~~~ 583 (755)
T 2vyc_A 569 VPTR------TTDFQIMFLFS 583 (755)
T ss_dssp CCSE------ECSSEEEEECC
T ss_pred EEee------cCCCeEEEEEC
Confidence 8643 23455777764
No 149
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.89 E-value=7.3e-22 Score=193.45 Aligned_cols=305 Identities=13% Similarity=0.021 Sum_probs=198.2
Q ss_pred ChHHHHHHHHHHcCc---CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINK---NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~ 144 (429)
++|.+.+++.+.+.. +...+...-+......++++.+++++|.+. ..++|+| ++++..++.++...
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~------~i~~~sG-~~a~~~~~~~l~~~---- 129 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA------ALVFSSA-YNANDATLSTLRVL---- 129 (401)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE------EEEESCH-HHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc------EEEECCc-HHHHHHHHHHHhcC----
Confidence 346677777776644 111111111122233456667888888742 2555555 45777776654321
Q ss_pred HHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh----hCCeEEEEeeCCCccccccC
Q 014163 145 RKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD----ENTICVAAILGSTLTGEFED 220 (429)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~ 220 (429)
.+ +++|+++.++|.++...++..|++++.+|.+ |+++|+++++ +++++|++++++|+||.+.|
T Consensus 130 --~~-----gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~ 196 (401)
T 2bwn_A 130 --FP-----GLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP 196 (401)
T ss_dssp --ST-----TCEEEEETTCCHHHHHHHHHSCCCEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC
T ss_pred --CC-----CCEEEECchhhHHHHHHHHHcCCeEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC
Confidence 01 2689999999999999999999999999864 6888888887 57899999999999999999
Q ss_pred hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCC-c--cccCC-CCeeEEEEcCcccCCCCCCeEEEEEeCCCCc
Q 014163 221 VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL-E--WDFRL-PLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296 (429)
Q Consensus 221 l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~--~~~~~-~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~ 296 (429)
+++|.++|++| |+++|+|++|+.+.. .+.. . ...+. ...|.+..+.+|.++. .| |+++.+ + .+
T Consensus 197 l~~i~~l~~~~------~~~li~Dea~~~g~~---~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~G-G~~~~~-~-~~ 263 (401)
T 2bwn_A 197 IKEICDIAEEF------GALTYIDEVHAVGMY---GPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FG-GYIAAS-A-RM 263 (401)
T ss_dssp HHHHHHHHHHH------TCEEEEECTTTTTTS---STTSCCHHHHHTCGGGCSEEEEESSSTTCS-CC-EEEEEC-H-HH
T ss_pred HHHHHHHHHHc------CCEEEEecccccccc---CCCCceeeeccCccccCcEEEeechhhccC-CC-CEEecC-H-HH
Confidence 99999999999 999999999984321 1110 0 01111 2468888899998864 34 777653 2 22
Q ss_pred cccccc-ccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceE
Q 014163 297 PDELVF-HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPL 375 (429)
Q Consensus 297 ~~~~~~-~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 375 (429)
.+.+.. ...+... .++.+ ....++.++++.+...++++..++..++++++.+.|+++ +++++.+ ..++
T Consensus 264 ~~~l~~~~~~~~~~-------~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~--~~~~ 332 (401)
T 2bwn_A 264 VDAVRSYAPGFIFS-------TSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDH--GSHI 332 (401)
T ss_dssp HHHHHHHCHHHHTS-------BCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCC--SSSC
T ss_pred HHHHHHhCcCceec-------CCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCC--CCCe
Confidence 121111 0111100 02332 445556677777766677889999999999999999988 5776643 4567
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCC-CCceEEEEEec
Q 014163 376 VAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSY-PWSTKLRVISH 425 (429)
Q Consensus 376 v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~-~~~~~lRi~~~ 425 (429)
+.|.+.. +.+..++.+.|. .++|+.+.+...... .+...+|++++
T Consensus 333 ~~~~~~~--~~~~~~~~~~L~---~~~gi~v~~~~~~~~~~~~~~iRis~~ 378 (401)
T 2bwn_A 333 VPVVIGD--PVHTKAVSDMLL---SDYGVYVQPINFPTVPRGTERLRFTPS 378 (401)
T ss_dssp EEEECCC--HHHHHHHHHHHH---HHHCEECCEECTTTSCTTCCEEEECCC
T ss_pred EEEEeCC--hHHHHHHHHHHH---hcCCEEEeecCCCCCCCCCceEEEEee
Confidence 8887642 233445555552 267999876522222 24467999987
No 150
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.89 E-value=1.1e-21 Score=193.71 Aligned_cols=325 Identities=13% Similarity=0.031 Sum_probs=201.2
Q ss_pred CCccccccccC---CCh-HHHHHHHH--HHcCcC--CCCC-ccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCc
Q 014163 56 PRLNLASFVTT---WME-PECDKLVM--ASINKN--YVDM-DEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126 (429)
Q Consensus 56 ~~~~~~~~~~~---~~~-~~~~~~~~--~~~~~~--~~~~-~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~ 126 (429)
..++|+.+.|. ++. +.+.+++. ..+... ...| ...++..++++. ++++++++++ .+++|+|+
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~----ia~~~~~~~~-----~i~~t~G~ 96 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARAL----FAGYLDVKAE-----NVLVWNNS 96 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHH----HHHHTTSCGG-----GEEECSSC
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHH----HHHHhCCChh-----hEEEeCCc
Confidence 34667777776 333 34666654 444322 1334 444566666655 6777787652 48999999
Q ss_pred hHHHH--HHHHHHHH--HHHHHHHhcCCCC----CCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHH
Q 014163 127 SEAIM--LAGLAFKR--KWQQKRKEQGKPY----DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVEL 198 (429)
Q Consensus 127 t~a~~--~al~a~~~--~~~~~~~~~g~~~----~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~ 198 (429)
++++. +++.++.. + |... .+++|+++.++|..+...++..|++++.+|++++ + +|+++|+++
T Consensus 97 ~~al~~~~~~~~l~~~~~--------g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~ 166 (423)
T 3ez1_A 97 SLELQGLVLTFALLHGVR--------GSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD-G-PDVDAVERL 166 (423)
T ss_dssp HHHHHHHHHHHHHHTCCT--------TCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC--------CccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC-C-CCHHHHHHH
Confidence 99997 77776653 1 0000 0368999999999999999999999999999875 3 999999999
Q ss_pred hh--hCCeEEEEe-eCCCccccccChH---HHHHHH-HHhhhccCCCccEEeecccccccccccC-C-CCcccc------
Q 014163 199 VD--ENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKNEETGWDTPIHVDAASGGFIAPFLY-P-DLEWDF------ 263 (429)
Q Consensus 199 i~--~~~~~v~~~-~~~~~tG~~~~l~---~I~~la-~~~~~~~~~~~~l~vD~a~~~~~~~~~~-~-~~~~~~------ 263 (429)
++ +++++|+++ +++||||.+.+.+ +|+++| +++ |+++|+|++|+.+.. .. . ....++
T Consensus 167 l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~ 238 (423)
T 3ez1_A 167 AGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP------DFTIFADDAYRVHHL--VEEDRAEPVNFVVLARD 238 (423)
T ss_dssp HHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST------TCEEEEECTTSSCBC--CSSSCCCCCCHHHHHHH
T ss_pred HhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc------CCEEEEECCcchhhc--CCCCCCCCcchhhhhhc
Confidence 94 678888654 8899999997776 888888 899 999999999984221 11 0 000011
Q ss_pred -CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHH-cC--HHH
Q 014163 264 -RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-LG--FEG 339 (429)
Q Consensus 264 -~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~-l~--~~g 339 (429)
...+.+.+..+.+|+++++.++|+++.++ + +...+........ .+.+.....+...++.. .+ ...
T Consensus 239 ~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~-~-~~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~ 307 (423)
T 3ez1_A 239 AGYPDRAFVFASTSKITFAGAGLGFVASSE-D-NIRWLSKYLGAQS---------IGPNKVEQARHVKFLTEYPGGLEGL 307 (423)
T ss_dssp HTCTTSEEEEEESTTTSCSSSSCEEEEECH-H-HHHHHHHHHHHSC---------SCCCHHHHHHHHHHHHHSTTHHHHH
T ss_pred cCCCCeEEEEeCchhhccCCcceEEEEeCH-H-HHHHHHHHHhhhc---------cCCCHHHHHHHHHHHHhccchHHHH
Confidence 12346778888999888899999988753 2 2222211111110 01111222222233332 12 123
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hCC-CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc---CC
Q 014163 340 YKNIMENCMGNARALREGLE----KTG-RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK---LP 411 (429)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~L~----~~~-~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~---~~ 411 (429)
+++..+...++++.+.+.|. +++ .+++..+. ...++.+.++.. +..++.+.|. ++|+.+++. ++
T Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~-~g~~~~~~~~~~---~~~~~~~~l~----~~gv~v~~~g~~~~ 379 (423)
T 3ez1_A 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK-GGYFISLDTAEP---VADRVVKLAE----AAGVSLTPAGATYP 379 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS-BSSCEEEEESSS---CHHHHHHHHH----HTTEECCCTTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC-ccEEEEEECCCC---cHHHHHHHHH----HCCcEEecCccccc
Confidence 34444444455555555554 454 46665443 455666776532 4566666666 899998762 11
Q ss_pred -CCCCCceEEEEEecc
Q 014163 412 -MSYPWSTKLRVISHL 426 (429)
Q Consensus 412 -~~~~~~~~lRi~~~~ 426 (429)
....+..++|++++.
T Consensus 380 ~~~~~~~~~iRis~~~ 395 (423)
T 3ez1_A 380 AGQDPHNRNLRLAPTR 395 (423)
T ss_dssp TTCCSSSCEEEECCSS
T ss_pred CCCCCCCCeEEEEcCC
Confidence 111345789999864
No 151
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.89 E-value=3.7e-22 Score=192.52 Aligned_cols=304 Identities=13% Similarity=0.050 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 014163 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ 148 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~ 148 (429)
+|.+.+++.+.+... .|...+... ++++++++++|.+. .++++||++|+.+++.++..+.
T Consensus 28 ~p~v~~ai~~~~~~~--~~~~~~~~~----~l~~~la~~~~~~~-------~i~~~~g~~a~~~a~~~~~~~g------- 87 (359)
T 3pj0_A 28 LTEALQNIDDNLESD--IYGNGAVIE----DFETKIAKILGKQS-------AVFFPSGTMAQQIALRIWADRK------- 87 (359)
T ss_dssp HHHHTTTSCTTCBCC--BTTBSHHHH----HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHhhcccC--cccCCHHHH----HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHHhcC-------
Confidence 455555555433322 233344444 45566888899864 5677899999999998876631
Q ss_pred CCCCCCcEEEEcCCCchHHHH---HHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCcc-ccccChHH-
Q 014163 149 GKPYDKPNIVTGANVQVCWEK---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLT-GEFEDVKL- 223 (429)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~---~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t-G~~~~l~~- 223 (429)
++..|+++++.|++... .+...|++++.+|.+ ++.+|+++|+++ .+++++|+++.++|++ |.+.+.++
T Consensus 88 ----~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l 160 (359)
T 3pj0_A 88 ----ENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA--NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEEL 160 (359)
T ss_dssp ----TCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT--TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHH
T ss_pred ----CCcEEEEeccceeeehhcchHHHhcCceEEecCCc--CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHH
Confidence 01246677777765432 235568888888763 378999999998 7789999999999888 68866555
Q ss_pred --HHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccc
Q 014163 224 --LHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELV 301 (429)
Q Consensus 224 --I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~ 301 (429)
|+++|++| |+++|+|++|..+......... ..+. .++|+++++.||++++|.| |+++. +++.. +.+.
T Consensus 161 ~~l~~~~~~~------~~~li~D~a~~~~~~~~~~~~~-~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~-~~~l~-~~~~ 229 (359)
T 3pj0_A 161 EKISEYCHEQ------GISLHLDGARLWEITPFYQKSA-EEIC-ALFDSVYVSFYKGIGGIAG-AILAG-NDDFV-QEAK 229 (359)
T ss_dssp HHHHHHHHHH------TCEEEEEETTCGGGHHHHTCCH-HHHH-TTCSEEEEESSSTTCCSSC-EEEEE-CHHHH-HHHH
T ss_pred HHHHHHHHHc------CCEEEEECcchhcchhhhCCCH-HHhh-ccCCEEEEeccccCCCcce-EEEEC-CHHHH-HHHH
Confidence 59999999 9999999998654321111111 1111 3578898999999888866 66554 33222 2221
Q ss_pred cccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEec
Q 014163 302 FHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLK 381 (429)
Q Consensus 302 ~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (429)
......+... .+. .....+...+++. ..+.+++..++++++.+.|++++++++...+...+++.+.+.
T Consensus 230 ~~~~~~~~~~------~~~-~~~~~a~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~ 297 (359)
T 3pj0_A 230 IWKRRYGGDL------ISL-YPYILSADYYFEK-----RIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFE 297 (359)
T ss_dssp HHHHHTTCCC------SCC-HHHHHHHHHHHHH-----HGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEES
T ss_pred HHHHHhCCCc------chh-HHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEec
Confidence 1111111110 011 1112222223321 124455677889999999999988988633336777777775
Q ss_pred CCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 382 DSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 382 ~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
.....+..++.+.|. ++|+.+++.......+..++|++++.
T Consensus 298 ~~~~~~~~~l~~~l~----~~GV~v~~g~~~~~~~~~~~r~~i~~ 338 (359)
T 3pj0_A 298 NSADEIGAILTKIQD----ETGVGISGYLQEKSADVCAFEVSVGD 338 (359)
T ss_dssp SCHHHHHHHHHHHHH----HHCEECCSCCEEEETTEEEEEEECCT
T ss_pred CccchhHHHHHHHHH----hcCcEecCCccccCCCceEEEEEecC
Confidence 321122344555555 99999876522223567789998863
No 152
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.89 E-value=2.1e-21 Score=190.41 Aligned_cols=249 Identities=15% Similarity=0.053 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH----HHH
Q 014163 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FAR 172 (429)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~ 172 (429)
.+++++.+++++|.+. .++++||++|+.+++.++.+ .+++|+++.+.|.++.. .++
T Consensus 64 ~~~l~~~ia~~~g~~~-------~i~~~~g~~ai~~~~~~l~~-------------~gd~Vl~~~~~y~~~~~~~~~~~~ 123 (404)
T 1e5e_A 64 VSNLEGKIAFLEKTEA-------CVATSSGMGAIAATVLTILK-------------AGDHLISDECLYGCTHALFEHALT 123 (404)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESCCCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhCCCc-------EEEeCChHHHHHHHHHHHhC-------------CCCEEEEeCCCchhHHHHHHHHHH
Confidence 3356667888888853 77888889999998887643 13689999999998877 778
Q ss_pred hcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHH-hhhccCCCccEEeeccccccc
Q 014163 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFI 251 (429)
Q Consensus 173 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~-~~~~~~~~~~l~vD~a~~~~~ 251 (429)
..|++++.+|.+ |+++|+++++++|++|++++++||+|.+.|+++|+++|++ + |+++++|++|+.+.
T Consensus 124 ~~g~~~~~v~~~------d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~------~~~li~De~~~~~~ 191 (404)
T 1e5e_A 124 KFGIQVDFINTA------IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE------GVLVIADNTFCSPM 191 (404)
T ss_dssp HTTCEEEEECTT------STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTST------TCEEEEECTTTCTT
T ss_pred HcCCEEEEECCC------CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhc------CCEEEEECCCchhh
Confidence 899999998864 7789999999999999999999999999999999999999 9 99999999998754
Q ss_pred ccccCCCCccccCCCCeeEEEEcCcccCCCCCC--eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHH
Q 014163 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY 329 (429)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~ 329 (429)
. .. ... .++|+++.+.+|++++|.+ +|+++.+++ .+...+........+ ++ ...+.++
T Consensus 192 ~--~~---~~~---~~~di~~~S~sK~~~~~g~ri~G~~~~~~~-~~~~~l~~~~~~~~g--------~~---~~~~~~~ 251 (404)
T 1e5e_A 192 I--TN---PVD---FGVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDITG--------SV---ISPHDAW 251 (404)
T ss_dssp T--CC---GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCCCC--------CC---CCHHHHH
T ss_pred h--CC---ccc---cCCEEEEEcCccccCCCCCCeEEEEEECHH-HHHHHHHHHHHhCCC--------CC---CCHHHHH
Confidence 2 11 112 2589999999998776654 498887642 221122111111100 11 1233455
Q ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeE-EeeCC---------------CCceEEEEEecCCCCCCHHHHHH
Q 014163 330 YQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE-ILSKD---------------VGVPLVAFSLKDSSAHTVFEISE 393 (429)
Q Consensus 330 ~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~v~f~~~~~~~~~~~~~~~ 393 (429)
+++..+.. +..++++..++++.+.+.|++.+.+. ++.+. ...++++|.+++. ..++.+
T Consensus 252 ~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~ 325 (404)
T 1e5e_A 252 LITRGLST--LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG----FEGAKK 325 (404)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH----HHHHHH
T ss_pred HHHHhHhH--HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC----HHHHHH
Confidence 55555532 45667777788888888888876553 22211 0267889987431 123333
Q ss_pred HHHHHHhccCceec
Q 014163 394 GLRKKLNRFQVVYP 407 (429)
Q Consensus 394 ~L~~~l~~~G~~~~ 407 (429)
.|. +.|+.+.
T Consensus 326 ~l~----~~~i~~~ 335 (404)
T 1e5e_A 326 LLD----NLKLITL 335 (404)
T ss_dssp HHH----TCSSSEE
T ss_pred HHH----hCCCcee
Confidence 344 7787443
No 153
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.89 E-value=7.5e-22 Score=192.98 Aligned_cols=320 Identities=11% Similarity=0.000 Sum_probs=201.9
Q ss_pred Cccccccc---cCC---ChHHHHHHHHH-HcCcC-CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 57 RLNLASFV---TTW---MEPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 57 ~~~~~~~~---~~~---~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
.++|+.+. +.. ..|.+.+++.. ++... ...|....+..++++++.+++....+.+.+. +....++|+|+++
T Consensus 28 ~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~-~~~~i~~t~g~~~ 106 (397)
T 3fsl_A 28 KVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQ-QRVATIQTLGGSG 106 (397)
T ss_dssp CEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT-TCEEEEEESHHHH
T ss_pred eEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccc-cceEEEEcCCcHH
Confidence 35666662 332 23678888888 77653 3345556677888888777776544421010 1003799999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc-CCccccCHHHHHHHhh---hCCe
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD---ENTI 204 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~---~~~~ 204 (429)
|+.+++.....- . .++.|+++.++|.++...++..|++++.+|.. ++++.+|+++|+++++ ++++
T Consensus 107 a~~~~~~~~~~~------~-----~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 175 (397)
T 3fsl_A 107 ALKVGADFLKRY------F-----PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSI 175 (397)
T ss_dssp HHHHHHHHHHHH------C-----TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHHHHhc------C-----CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCE
Confidence 999886433211 0 13689999999999999999999999999983 3347899999999998 5678
Q ss_pred EEEEeeCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcc---cc-CCCCeeEEEEcCcc
Q 014163 205 CVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW---DF-RLPLVKSINVSGHK 277 (429)
Q Consensus 205 ~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~---~~-~~~~~d~~~~s~hK 277 (429)
++++++++||||.+ +++++|+++|+++ ++++|+|++|+.+... ...... .+ ....-+.+..+.+|
T Consensus 176 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK 247 (397)
T 3fsl_A 176 VLLHPCCHNPTGADLTNDQWDAVIEILKAR------ELIPFLDIAYQGFGAG--MEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp EEECSSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTSSSC--TTGGGHHHHHHHHTTCCEEEEEECTT
T ss_pred EEEeCCCCCCCCcCCCHHHHHHHHHHHHhC------CEEEEEecCchhhccC--cccccHHHHHHHhcCCCEEEEecccc
Confidence 89999999999998 5567999999999 9999999999875421 000000 11 12234566667789
Q ss_pred cCC-CCCCeEEEEEeCC--CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC--------HHHHHHHHHH
Q 014163 278 YGL-VYAGVGWVVWRTK--DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEGYKNIMEN 346 (429)
Q Consensus 278 ~~~-~p~g~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~--------~~g~~~~~~~ 346 (429)
.++ ++.++|+++.... +.+.........+..... ++.+ .+++.++...+. .+.+++..++
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 318 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNY------SSPP---NFGAQVVAAVLNDEALKASWLKEVEEMRTR 318 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTT------SSCC---SHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhcc------CCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 765 6778999876322 111111000000000000 1111 112222222222 3456788888
Q ss_pred HHHHHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEE
Q 014163 347 CMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVI 423 (429)
Q Consensus 347 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~ 423 (429)
..++++++.+.|++++ ++.+..+ ..+.+.|. +.+...+.+.|. ++|+.+.+. . |++
T Consensus 319 ~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~----~~gi~v~~g-------~---Ris 377 (397)
T 3fsl_A 319 ILAMRQELVKVLSTEMPERNFDYLLN--QRGMFSYT-----GLSAAQVDRLRE----EFGVYLIAS-------G---RMC 377 (397)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCTHHHH--CCSSEEEC-----CCCHHHHHHHHH----TTCEECCTT-------C---EEE
T ss_pred HHHHHHHHHHHHHhcCCCCCceeecC--CceEEEec-----CCCHHHHHHHHH----hCCEEECCC-------C---eEE
Confidence 9999999999999875 4655433 23444442 123344455555 899997642 1 888
Q ss_pred ecc
Q 014163 424 SHL 426 (429)
Q Consensus 424 ~~~ 426 (429)
++.
T Consensus 378 ~~~ 380 (397)
T 3fsl_A 378 VAG 380 (397)
T ss_dssp GGG
T ss_pred EEe
Confidence 864
No 154
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.88 E-value=7.5e-22 Score=205.18 Aligned_cols=238 Identities=13% Similarity=-0.018 Sum_probs=171.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH-HHhcCce
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-ARYFEVE 177 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~-~~~~G~~ 177 (429)
++++.+++++|.+. ...+++|+++||..++.++.. .+++|+++.+.|.++... ++..|++
T Consensus 177 e~e~~lA~~~gae~------~i~v~nGtt~an~~ai~al~~-------------pGD~VLv~~~~H~S~~~~~~~l~Ga~ 237 (730)
T 1c4k_A 177 AAEKHAARVYNADK------TYFVLGGSSNANNTVTSALVS-------------NGDLVLFDRNNHKSVYNSALAMAGGR 237 (730)
T ss_dssp HHHHHHHHHTTCSE------EEEESSHHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHTTTTCCE
T ss_pred HHHHHHHHHHCCCc------EEEECCHHHHHHHHHHHHhcC-------------CCCEEEEcCCchHHHHHHHHHHCCCE
Confidence 56677999999974 256777888999998888754 236899999999999888 8999999
Q ss_pred eEEEeccCCc----cccCHHHH-----HHHhhhC------C----eEEEEeeCCCccccccChHHHHHHHHHhhhccCCC
Q 014163 178 LKEVKLEEGY----YVMNPVKA-----VELVDEN------T----ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238 (429)
Q Consensus 178 v~~v~~~~~~----~~~d~~~l-----~~~i~~~------~----~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~ 238 (429)
+++++.+.+. +.+|+++| +++|+++ + ++|+++++ |++|.+.|+++|+++|+++ +
T Consensus 238 ~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~------g 310 (730)
T 1c4k_A 238 PVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHL------C 310 (730)
T ss_dssp EEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGG------B
T ss_pred EEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHc------C
Confidence 9999875321 34788888 9999875 5 78888887 5899999999999999999 9
Q ss_pred ccEEeecccccccccccCCCC----ccccCCCCee----EEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCC
Q 014163 239 TPIHVDAASGGFIAPFLYPDL----EWDFRLPLVK----SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310 (429)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~----~~~~~~~~~d----~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~ 310 (429)
+++|+|+||+.++. +.+.. ..+....++| +++.|+||++.++.+.|+++++++.. .. ...+....
T Consensus 311 ~~livDeAh~~~~~--f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l-~g----~~~~i~~~ 383 (730)
T 1c4k_A 311 DYIEFDSAWVGYEQ--FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI-KG----QLRYCDHK 383 (730)
T ss_dssp SEEEEECTTCCGGG--SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG-TT----STTCCCHH
T ss_pred CeEEEEcccccccc--cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhh-cC----cccccCHH
Confidence 99999999975422 11111 1111112466 99999999998888888988876531 00 00011000
Q ss_pred ----CCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeC
Q 014163 311 ----QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK-TGRFEILSK 369 (429)
Q Consensus 311 ----~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~ 369 (429)
.......++++...+.++.++++.+..++.++.+++..++++++++.|++ +++++++.+
T Consensus 384 ~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 384 HFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccc
Confidence 00000114555555666777777777644477789999999999999998 788988654
No 155
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.88 E-value=1.2e-21 Score=193.71 Aligned_cols=323 Identities=15% Similarity=0.046 Sum_probs=202.1
Q ss_pred CccccccccCCCh----HHHHHHH--HHHcCcC---CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCch
Q 014163 57 RLNLASFVTTWME----PECDKLV--MASINKN---YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS 127 (429)
Q Consensus 57 ~~~~~~~~~~~~~----~~~~~~~--~~~~~~~---~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t 127 (429)
.++|..+.|.... +.+.+++ ..++... ...|....+..++++. ++++++++++ .+++|+|++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~----ia~~~~~~~~-----~i~~t~G~~ 105 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQI----WADLLGVPVE-----QVLAGDASS 105 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHH----HHHHHTSCGG-----GEEECSSCH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHH----HHHHhCCCcc-----eEEEeCCcH
Confidence 4667777765422 1244444 3444432 2334444566666655 6666677652 489999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHhcCCC-----CCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh
Q 014163 128 EAIM--LAGLAFKRKWQQKRKEQGKP-----YDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD 200 (429)
Q Consensus 128 ~a~~--~al~a~~~~~~~~~~~~g~~-----~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~ 200 (429)
+++. +++.++.+.. +|.+ ..+++|+++.++|..+...++..|++++.+|++++ + +|+++|+++++
T Consensus 106 ~al~~~~~~~~l~~~~------~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~ 177 (427)
T 3ppl_A 106 LNIMFDVISWSYIFGN------NDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED-G-PDMDAVEELVK 177 (427)
T ss_dssp HHHHHHHHHHHHHHCC------TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT-E-ECHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccC------CcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC-C-CCHHHHHHHHh
Confidence 9994 6666665400 0000 00368999999999999999999999999999875 4 99999999995
Q ss_pred -hCCeEEEEe-eCCCccccccChH---HHHHHH-HHhhhccCCCccEEeecccccccccccCCC-Ccccc-------CCC
Q 014163 201 -ENTICVAAI-LGSTLTGEFEDVK---LLHDLL-TKKNEETGWDTPIHVDAASGGFIAPFLYPD-LEWDF-------RLP 266 (429)
Q Consensus 201 -~~~~~v~~~-~~~~~tG~~~~l~---~I~~la-~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~-~~~~~-------~~~ 266 (429)
+++++|+++ +++||||.+.+.+ +|+++| +++ ++++|+|++|+.+.. .... ...++ +..
T Consensus 178 ~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~------~~~ii~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~ 249 (427)
T 3ppl_A 178 NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAP------DFRVVWDNAYAVHTL--TDEFPEVIDIVGLGEAAGNP 249 (427)
T ss_dssp STTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST------TCEEEEECTTTTCBS--SSCCCCCCCHHHHHHHTTCT
T ss_pred cCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcC------CCEEEEECCCccccc--CCCCCCccchhhhhhccCCC
Confidence 577888766 7899999997776 888888 999 999999999987321 1111 01111 123
Q ss_pred CeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH-----HHHH
Q 014163 267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-----EGYK 341 (429)
Q Consensus 267 ~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~-----~g~~ 341 (429)
+.+.+..+.+|+++++.++|+++.+. .+...+........ .+ ...+.+.++...+.. ..++
T Consensus 250 ~~~i~~~S~SK~~~~G~r~G~~~~~~--~l~~~~~~~~~~~~---------~~---~~~~~q~~~~~~l~~~~~~~~~~~ 315 (427)
T 3ppl_A 250 NRFWAFTSTSKITLAGAGVSFFLTSA--ENRKWYTGHAGIRG---------IG---PNKVNQLAHARYFGDAEGVRAVMR 315 (427)
T ss_dssp TSEEEEEESTTTSCTTSSCEEEECCH--HHHHHHHHHHHHHC---------SC---CCHHHHHHHHHHHCSHHHHHHHHH
T ss_pred CcEEEEechhhccCcCccEEEEEcCH--HHHHHHHHHhhccc---------CC---CCHHHHHHHHHHHhChhhHHHHHH
Confidence 46778888999988889999987642 22122111111100 01 122334444444432 2244
Q ss_pred HHHHHHHHHHHHHHHHHHh----CCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc---CCC-C
Q 014163 342 NIMENCMGNARALREGLEK----TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK---LPM-S 413 (429)
Q Consensus 342 ~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~---~~~-~ 413 (429)
+..+...++++++.+.|.+ ++++.+..+. ...++.++++. .+..++.+.|. ++|+.+++. ++. .
T Consensus 316 ~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~g~~~~~~~~~---~~~~~~~~~l~----~~gv~v~~~g~~~~~~~ 387 (427)
T 3ppl_A 316 KHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-GGYFISLDVVP---GTASRVAELAK----EAGIALTGAGSSYPLRQ 387 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-BSSCEEEECST---TCHHHHHHHHH----HTTEECCCTTTTSGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-ccEEEEEECCc---chHHHHHHHHH----HCCCEEecCcCcCCCCC
Confidence 5555556666666666644 4446665443 45566667643 24566666666 899998762 111 1
Q ss_pred CCCceEEEEEecc
Q 014163 414 YPWSTKLRVISHL 426 (429)
Q Consensus 414 ~~~~~~lRi~~~~ 426 (429)
..+..++|++++.
T Consensus 388 ~~~~~~~Ris~~~ 400 (427)
T 3ppl_A 388 DPENKNLRLAPSL 400 (427)
T ss_dssp CTTSCEEEECCSS
T ss_pred CCCCCeEEEECCC
Confidence 1346789999865
No 156
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.88 E-value=3.3e-21 Score=188.79 Aligned_cols=256 Identities=13% Similarity=0.089 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHH--
Q 014163 94 TELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA-- 171 (429)
Q Consensus 94 ~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~-- 171 (429)
....+++++++++++|.+. .+++++|++|+..++.++.. .++.|+++.+.|.++...+
T Consensus 63 ~~~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~-------------~gd~vi~~~~~~~~~~~~~~~ 122 (398)
T 2rfv_A 63 NPTTDALEKKLAVLERGEA-------GLATASGISAITTTLLTLCQ-------------QGDHIVSASAIYGCTHAFLSH 122 (398)
T ss_dssp CHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESSSCHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEcCCCcccHHHHHHH
Confidence 3445577788999999862 67778888999999888743 1368999999999877765
Q ss_pred --HhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 172 --RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 172 --~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
+..|++++.+|.+ |+++|++++++++++|++++++|++|.+.|+++|+++|++| |+++|+|++|+.
T Consensus 123 ~~~~~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~ 190 (398)
T 2rfv_A 123 SMPKFGINVRFVDAA------KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQ------GALLVVDNTFMS 190 (398)
T ss_dssp HHHHTTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHT------TCEEEEECTTTC
T ss_pred HHHHcCCEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcc
Confidence 7789999888863 79999999999999999999999999999999999999999 999999999986
Q ss_pred ccccccCCCCccccCCCCeeEEEEcCcccCCCCCC--eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHH
Q 014163 250 FIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIA 327 (429)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~ 327 (429)
+.. .. ... .++|+++.+.||++++|.+ .|+++.+++ .+...+........+ ++. ..+.
T Consensus 191 ~~~---~~--~~~---~~~di~~~s~sK~~~~~g~~~~G~~~~~~~-~~~~~~~~~~~~~~~--------~~~---~~~~ 250 (398)
T 2rfv_A 191 PYC---QQ--PLQ---LGADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARFVGLKDITG--------GCM---SPFN 250 (398)
T ss_dssp TTT---CC--GGG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTHHHHTTC--------CCC---CHHH
T ss_pred ccc---CC--chh---hCCcEEEEeCcccccCCCCceEEEEEECHH-HHHHHHHHHHHhCCC--------CCC---CHHH
Confidence 432 11 111 2589999999999876554 488887542 221111110000000 122 2234
Q ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe--------------eC--CCCceEEEEEecCCCCCCHHHH
Q 014163 328 QYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL--------------SK--DVGVPLVAFSLKDSSAHTVFEI 391 (429)
Q Consensus 328 ~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~--------------~~--~~~~~~v~f~~~~~~~~~~~~~ 391 (429)
+++++..+. .+...+++..++++++.+.|++.+.++-+ .+ ....++++|.+++. .+.
T Consensus 251 ~~~~~~~l~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-----~~~ 323 (398)
T 2rfv_A 251 AWLTLRGVK--TLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG-----LEA 323 (398)
T ss_dssp HHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH-----HHH
T ss_pred HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC-----HHH
Confidence 455554442 24555666777888888888876544322 11 01467888987531 223
Q ss_pred HHHHHHHHhccCceecc
Q 014163 392 SEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 392 ~~~L~~~l~~~G~~~~~ 408 (429)
...+.+++...|+.++.
T Consensus 324 ~~~l~~~~~~~~i~~~~ 340 (398)
T 2rfv_A 324 GRRMINSVELCLLAVSL 340 (398)
T ss_dssp HHHHHTTCSSSEECSCC
T ss_pred HHHHHHhCCcceeccCC
Confidence 44555555556666543
No 157
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.88 E-value=5.6e-21 Score=187.73 Aligned_cols=256 Identities=11% Similarity=0.018 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHH---
Q 014163 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR--- 172 (429)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~--- 172 (429)
..+++.+++++++|.+. .+++++|++|+..++.++.. .++.|+++.+.|.++...++
T Consensus 82 ~~~~l~~~la~~~g~~~-------~~~~~sG~~Ai~~al~~l~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~ 141 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAPA-------AFATASGMAAVFTSLGALLG-------------AGDRLVAARSLFGSCFVVCSEIL 141 (414)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCC-------------TTCEEEEESCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEcCCccchHHHHHHHHH
Confidence 34466677999999753 78999999999988887643 23689999999998766654
Q ss_pred -hcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccc
Q 014163 173 -YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (429)
Q Consensus 173 -~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (429)
..|++++.+|.+ |+++|+++++++|++|++++++||+|.+.|+++|+++|+++ |+++|+|++|+.+.
T Consensus 142 ~~~g~~~~~v~~~------d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~------g~~livDe~~~~~~ 209 (414)
T 3ndn_A 142 PRWGVQTVFVDGD------DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAA------GAKVVLDNVFATPL 209 (414)
T ss_dssp HHTTCEEEEECTT------CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHH
T ss_pred HHcCcEEEEeCCC------CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 489999998864 78999999999999999999999999999999999999999 99999999998543
Q ss_pred ccccCCCCccccCCCCeeEEEEcCcccCCCCC--CeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHH
Q 014163 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQY 329 (429)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~--g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~ 329 (429)
. ..+ .. .++|.++.|.+|++.++. ..|+++.+++ .+...+.......+ +. ......|
T Consensus 210 ~--~~~---~~---~g~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~~~~~~g----------~~--~~~~~a~ 268 (414)
T 3ndn_A 210 L--QQG---FP---LGVDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQKLMRHTG----------PA--MSAFNAW 268 (414)
T ss_dssp H--CCC---GG---GTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHHHHHHHC----------CC--CCHHHHH
T ss_pred c--CCc---hh---cCCCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHHHHHHcC----------CC--CCHHHHH
Confidence 2 111 11 257999999999986533 3688776542 22111111111111 11 1223345
Q ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC----------------CceEEEEEecCCCCCCHHHHHH
Q 014163 330 YQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----------------GVPLVAFSLKDSSAHTVFEISE 393 (429)
Q Consensus 330 ~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~~~~ 393 (429)
.+++.+ +.+..++++..++++++.+.|++.|.+..+..|. ..+++.|.+++.. ....+-+.
T Consensus 269 ~~~~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~-~~~~~~~~ 345 (414)
T 3ndn_A 269 VLLKGL--ETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPE-DVAKQRAF 345 (414)
T ss_dssp HHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCG-GGHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCc-cccHHHHH
Confidence 555433 4567788888999999999999998876554331 2458888886420 00023345
Q ss_pred HHHHHHhccCceec
Q 014163 394 GLRKKLNRFQVVYP 407 (429)
Q Consensus 394 ~L~~~l~~~G~~~~ 407 (429)
++.++|...++.++
T Consensus 346 ~~~~~l~~~~~~~s 359 (414)
T 3ndn_A 346 EVLDKMRLIDISNN 359 (414)
T ss_dssp HHHHHCSSSEECSC
T ss_pred HHHHhCccceEcCC
Confidence 55555556665544
No 158
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.88 E-value=1.2e-20 Score=186.60 Aligned_cols=231 Identities=11% Similarity=-0.043 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH----HH
Q 014163 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FA 171 (429)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~ 171 (429)
..+++++++++++|.+. .+++++|++|+.+++.++.+ .+++|+++.+.|.++.. .+
T Consensus 115 ~~~~l~~~lA~l~g~~~-------~v~~~sG~~Ai~~al~~l~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~ 174 (445)
T 1qgn_A 115 TTVVLEEKISALEGAES-------TLLMASGMCASTVMLLALVP-------------AGGHIVTTTDCYRKTRIFIETIL 174 (445)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHSC-------------SSCEEEEETTSCHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEcCCCchhHHHHHHHHH
Confidence 34466677899999853 55666677999999887643 13689999999987655 35
Q ss_pred HhcCceeEEEeccCCccccCHHHHHHHhhhCC-eEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccc
Q 014163 172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENT-ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF 250 (429)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~-~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~ 250 (429)
+..|++++.++.+ |+++|+++|+++| ++|++++++|++|.+.|+++|+++|+++ |+++|+|++|+.+
T Consensus 175 ~~~G~~v~~v~~~------d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~------g~~livD~a~~~~ 242 (445)
T 1qgn_A 175 PKMGITATVIDPA------DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEK------GALVCIDGTFATP 242 (445)
T ss_dssp GGGTCEEEEECSS------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCT
T ss_pred HHcCCEEEEeCCC------CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCccc
Confidence 6789999988753 7999999999999 9999999999999999999999999999 9999999999854
Q ss_pred cccccCCCCccccCCCCeeEEEEcCcccCCCCC--CeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHH
Q 014163 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQ 328 (429)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~--g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~ 328 (429)
.. ..+ .. .++|+++.|.||+++++. .+|+++.++ +.. ..+....... |+. ......
T Consensus 243 ~~--~~~---~~---~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~-~~l~~~~~~~----------g~~--~~~~~a 300 (445)
T 1qgn_A 243 LN--QKA---LA---LGADLVLHSATKFLGGHNDVLAGCISGPL-KLV-SEIRNLHHIL----------GGA--LNPNAA 300 (445)
T ss_dssp TT--CCT---TT---TTCSEEEECTTTTTTCSSSCCCEEEEECH-HHH-HHHHHHHHHH----------CCC--CCHHHH
T ss_pred cc--CCc---cc---cCCEEEEECCcccccccccceEEEEEECH-HHH-HHHHHHHHHh----------CCC--CCHHHH
Confidence 32 111 11 368999999999986543 278888754 222 2211111101 111 112233
Q ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EEeeCC---------------CCceEEEEEecC
Q 014163 329 YYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRF-EILSKD---------------VGVPLVAFSLKD 382 (429)
Q Consensus 329 ~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~---------------~~~~~v~f~~~~ 382 (429)
|.+++.+ +.+..++++..++++++.+.|++.|++ .+..+. ...++++|.+++
T Consensus 301 ~~~~~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~ 368 (445)
T 1qgn_A 301 YLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG 368 (445)
T ss_dssp HHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred HHHHHhH--HHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC
Confidence 4444333 345667777888899999999999887 444431 136789999864
No 159
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.88 E-value=4.3e-21 Score=189.11 Aligned_cols=258 Identities=17% Similarity=0.065 Sum_probs=173.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH----HHHhc
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYF 174 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~~~ 174 (429)
++.+++++++|.+. .+++++|++|+..++.++.. .+++|+++++.|.+... .++..
T Consensus 86 ~le~~lA~l~g~~~-------~v~~~sG~~Ai~~al~al~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~~~~ 145 (430)
T 3ri6_A 86 DLEQRLKNLTGALG-------VLALGSGMAAISTAILTLAR-------------AGDSVVTTDRLFGHTLSLFQKTLPSF 145 (430)
T ss_dssp HHHHHHHHHHTCSE-------EEEESCHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHCCCc-------EEEECCHHHHHHHHHHHHhC-------------CCCEEEEcCCCchhHHHHHHHHHHHc
Confidence 44456888999864 67778889999988887743 23689999999987666 66788
Q ss_pred CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccc
Q 014163 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF 254 (429)
Q Consensus 175 G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~ 254 (429)
|++++.++.+ |+++|+++++++|++|++++++||+|.+.|+++|+++|+++ |+++|+|++|+.+..
T Consensus 146 G~~~~~v~~~------d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~------g~~livD~a~~~~~~-- 211 (430)
T 3ri6_A 146 GIEVRFVDVM------DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAK------GIPLVVDTTMTPPYL-- 211 (430)
T ss_dssp TCEEEEECTT------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTT------TCCEEEECTTSCTTT--
T ss_pred CCEEEEeCCC------CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc--
Confidence 9999998864 89999999999999999999999999999999999999999 999999999985432
Q ss_pred cCCCCccccCCCCeeEEEEcCcccCCCCC--CeEEEEEeCCCCcccc--ccc------ccCCCCCCC-CCceeccCCchh
Q 014163 255 LYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDE--LVF------HINYLGSDQ-PTFTLNFSKGSS 323 (429)
Q Consensus 255 ~~~~~~~~~~~~~~d~~~~s~hK~~~~p~--g~g~l~~~~~~~~~~~--~~~------~~~~~~~~~-~~~~~~~tr~~~ 323 (429)
..+ .. .++|+++.|.+|+++++. -.|+++.+........ +.. ...+..... ......|.. .
T Consensus 212 ~~~---~~---~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~--~ 283 (430)
T 3ri6_A 212 LEA---KR---LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPS--L 283 (430)
T ss_dssp CCG---GG---GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCC--C
T ss_pred CCh---HH---cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCC--C
Confidence 111 11 258999999999987652 2355554433222000 000 000000000 000000111 1
Q ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--C-------------ce-EEEEEecCCCCCC
Q 014163 324 QIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--G-------------VP-LVAFSLKDSSAHT 387 (429)
Q Consensus 324 ~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~-------------~~-~v~f~~~~~~~~~ 387 (429)
.....|.+++ +.+.+..++++..+++.++.+.|++.|.++.+..|. . .+ +++|.+++
T Consensus 284 ~~~~a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~----- 356 (430)
T 3ri6_A 284 SPHNAYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES----- 356 (430)
T ss_dssp CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-----
T ss_pred CHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC-----
Confidence 2233444443 345677788889999999999999999887555432 0 45 89998852
Q ss_pred HHHHHHHHHHHHhccCcee
Q 014163 388 VFEISEGLRKKLNRFQVVY 406 (429)
Q Consensus 388 ~~~~~~~L~~~l~~~G~~~ 406 (429)
.+-+.++.+++.-.++.+
T Consensus 357 -~~~~~~~~~~l~~~~~~~ 374 (430)
T 3ri6_A 357 -KEASYRFMDALKLIRRAT 374 (430)
T ss_dssp -HHHHHHHHHHCSSSEECS
T ss_pred -HHHHHHHHHhCCcceecC
Confidence 233455555544555443
No 160
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.4e-20 Score=187.05 Aligned_cols=311 Identities=11% Similarity=0.036 Sum_probs=199.1
Q ss_pred CChHHHHHHHHHHcCcCCC-C------CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYV-D------MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKR 139 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~ 139 (429)
+.+|.+.+++...+.+.+. . +...+....+|+..++++++++|.+. ..+++++|++|+..++.++++
T Consensus 56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~------~~v~~~sGs~a~~~a~~~~~~ 129 (447)
T 3h7f_A 56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEF------ANVQPHSGAQANAAVLHALMS 129 (447)
T ss_dssp CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE------EECCCSSHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCc------eEEEeCCHHHHHHHHHHHhcC
Confidence 4468888888777643221 1 11223344555444499999999974 133378889999988887754
Q ss_pred HHHHHHHhcCCCCCCcEEEEcCCCchH-HHH--HHHhcC--ceeEEEeccCCccccCHHHHHHHhhh-CCeEEEEeeCCC
Q 014163 140 KWQQKRKEQGKPYDKPNIVTGANVQVC-WEK--FARYFE--VELKEVKLEEGYYVMNPVKAVELVDE-NTICVAAILGST 213 (429)
Q Consensus 140 ~~~~~~~~~g~~~~~~~vi~~~~~h~s-~~~--~~~~~G--~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~ 213 (429)
.+++|++++++|.+ +.. .....| ..+..++++++++.+|+++|++++++ ++++|+++.+++
T Consensus 130 -------------~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~ 196 (447)
T 3h7f_A 130 -------------PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY 196 (447)
T ss_dssp -------------TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSC
T ss_pred -------------CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCC
Confidence 23689999988865 211 112333 34555666654578999999999964 788888888888
Q ss_pred ccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCC
Q 014163 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTK 293 (429)
Q Consensus 214 ~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~ 293 (429)
+++. ++++|+++|++| |+++|+|++|+.+.. ...... . ...++|+++.+.||++.+|.| |+++.++
T Consensus 197 ~~~~--~l~~i~~l~~~~------g~lli~Dea~~~g~~--~~g~~~-~-~~~~~di~~~s~sK~l~G~~g-G~i~~~~- 262 (447)
T 3h7f_A 197 PRVL--DFAAFRSIADEV------GAKLLVDMAHFAGLV--AAGLHP-S-PVPHADVVSTTVHKTLGGGRS-GLIVGKQ- 262 (447)
T ss_dssp CSCC--CHHHHHHHHHHH------TCEEEEECTTTHHHH--HTTSSC-C-STTTCSEEEEESSGGGCCCSC-EEEEECG-
T ss_pred CCcc--CHHHHHHHHHHc------CCEEEEECCchhhhh--cCCCCC-C-CCCCCcEEEecCCcCCCCCCe-EEEEECH-
Confidence 8776 899999999999 999999999854322 111111 1 124689999999999876655 8877653
Q ss_pred CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeeC
Q 014163 294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GRFEILSK 369 (429)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~ 369 (429)
+. .+.+... .... ..++.......++.+++.....+++++..++..++++++.+.|++. ++++++..
T Consensus 263 ~~-~~~l~~~-~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~ 333 (447)
T 3h7f_A 263 QY-AKAINSA-VFPG-------QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSG 333 (447)
T ss_dssp GG-HHHHHHH-HTTT-------TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGG
T ss_pred HH-HHHHhhh-cCCc-------ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecC
Confidence 22 2221111 0110 1133333445566666666555567889999999999999999887 34888754
Q ss_pred CCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCC---CCCCceEEEEEe
Q 014163 370 DVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPM---SYPWSTKLRVIS 424 (429)
Q Consensus 370 ~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~---~~~~~~~lRi~~ 424 (429)
+...+++.+.+.+. +.+...+.+.|. ++|+.++.. .+. .......+|++.
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~GI~v~~~~i~~~~~~p~~~~~lRig~ 387 (447)
T 3h7f_A 334 GTDVHLVLVDLRDS-PLDGQAAEDLLH----EVGITVNRNAVPNDPRPPMVTSGLRIGT 387 (447)
T ss_dssp SCSSSEEEEECTTS-SCCHHHHHHHHH----HTTEECBC-------------CEEEEEC
T ss_pred CCCCCEEEEEcCCC-CCCHHHHHHHHH----HCCeEEecccCCCCCCCCCCCCceeccC
Confidence 33456666776542 456666666666 789988721 111 112234599875
No 161
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.88 E-value=5.7e-21 Score=187.06 Aligned_cols=231 Identities=16% Similarity=0.090 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHH----
Q 014163 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA---- 171 (429)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~---- 171 (429)
..+++++.+++++|.+. .+++++|++|+..++.++.. .+++|+++.+.|.++...+
T Consensus 66 ~~~~l~~~la~~~g~~~-------~i~~~sG~~a~~~~l~~~~~-------------~gd~vl~~~~~~~~~~~~~~~~~ 125 (398)
T 1gc0_A 66 TLNLLEARMASLEGGEA-------GLALASGMGAITSTLWTLLR-------------PGDEVLLGNTLYGCTFAFLHHGI 125 (398)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESSCCSHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCCCc-------EEEECCHHHHHHHHHHHHhc-------------CCCEEEEeCCCchhHHHHHHHHH
Confidence 34456667889999863 67777789999999888743 1368999999998876654
Q ss_pred HhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccc
Q 014163 172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (429)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (429)
...|++++.++. .|+++|++++++++++|++++++|++|.+.|+++|+++|+++ |+++|+|++|+.+.
T Consensus 126 ~~~g~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~D~~~~~~~ 193 (398)
T 1gc0_A 126 GEFGVKLRHVDM------ADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKH------GATVVVDNTYCTPY 193 (398)
T ss_dssp GGGTCEEEEECT------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGG------TCEEEEECTTTHHH
T ss_pred HHcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 667888888875 279999999999999999999999999999999999999999 99999999998654
Q ss_pred ccccCCCCccccCCCCeeEEEEcCcccCCCCCC--eEEEEEeCCCCcccccccccCC-CCCCCCCceeccCCchhHHHHH
Q 014163 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINY-LGSDQPTFTLNFSKGSSQIIAQ 328 (429)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g--~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~tr~~~~~~~~ 328 (429)
. .. ... .++|.++.+.||++++|.+ .|+++.+++ .+...+.....+ .+ ++. ....+
T Consensus 194 ~--~~---~~~---~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~---------~~~---~~~~~ 252 (398)
T 1gc0_A 194 L--QR---PLE---LGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTG---------AVL---SPHDA 252 (398)
T ss_dssp H--CC---GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTC---------CCC---CHHHH
T ss_pred c--CC---chh---hCceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccCC---------CCC---CHHHH
Confidence 2 11 111 2589999999999887664 488876542 221111111111 11 122 22334
Q ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe--------------eC--CCCceEEEEEec
Q 014163 329 YYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL--------------SK--DVGVPLVAFSLK 381 (429)
Q Consensus 329 ~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~--------------~~--~~~~~~v~f~~~ 381 (429)
++++..+ +.+..++++..++++++.+.|++++.+.-+ .+ ....++++|.++
T Consensus 253 ~~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (398)
T 1gc0_A 253 ALLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK 319 (398)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET
T ss_pred HHHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC
Confidence 4444444 235667777888888888888887655422 11 014678899875
No 162
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.87 E-value=3.8e-21 Score=188.37 Aligned_cols=330 Identities=13% Similarity=0.039 Sum_probs=202.2
Q ss_pred HHHHHHHHHHhhcc-CCCCCccccccccCC-ChHHHHHHHHHHcCc-----CCCCCccChhhHHHHHHHHHHHHHh--hC
Q 014163 39 KEAAYQVINDELML-DGNPRLNLASFVTTW-MEPECDKLVMASINK-----NYVDMDEYPVTTELQNRCVNMIAHL--FN 109 (429)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~le~~~~~~la~l--~g 109 (429)
++++.+.+...... .+...++|..+.++. ++|.+.+++.+.+.. ....|...++..+++++ ++++ +|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~----la~~l~~g 91 (400)
T 3asa_A 16 FADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK----LSEDFYRG 91 (400)
T ss_dssp HHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH----HHHTTSTT
T ss_pred HHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH----HHHHHHcC
Confidence 45555555443322 234455667766653 456677777666543 12234334466666666 5555 46
Q ss_pred -CCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCce-eEEEeccCC-
Q 014163 110 -TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLEEG- 186 (429)
Q Consensus 110 -~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~-v~~v~~~~~- 186 (429)
++. ..+.+|+|+++++..++..+ . .++.|+++.++|..+..+++..|++ ++.+|++++
T Consensus 92 ~~~~-----~~v~~~~G~~~al~~~~~~~-~-------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~ 152 (400)
T 3asa_A 92 FVDA-----KEIFISDGAKVDLFRLLSFF-G-------------PNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQEN 152 (400)
T ss_dssp SSCG-----GGEEEESCHHHHHHHHHHHH-C-------------SSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGG
T ss_pred CCCH-----HHEEEccChHHHHHHHHHHc-C-------------CCCEEEECCCCcHHHHHHHHHcCCcceEecccchhc
Confidence 433 24899999999998754322 1 1368999999999999999999999 999998642
Q ss_pred ccccCHHHHHHHhhhCCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc
Q 014163 187 YYVMNPVKAVELVDENTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF 263 (429)
Q Consensus 187 ~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~ 263 (429)
.+..|++ + + +++++|++++++||||.+.+ +++|+++|+++ |+++++|++|+++.. .+.....+
T Consensus 153 ~~~~~l~---~-~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~---~~~~~~~~ 218 (400)
T 3asa_A 153 AFFPEFP---E-D-THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH------EILILFDAAYSTFIS---DPSLPKSI 218 (400)
T ss_dssp TTCCCCC---T-T-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEECTTGGGCC---CTTSCSSG
T ss_pred CcccChh---h-c-cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhc---CCCCCCch
Confidence 2344432 2 1 56889999999999999976 66789999999 999999999986431 11111111
Q ss_pred -CCC---CeeEEEEcCcccCC-CCCCeEEEEEeCCCCc------ccccccccCCCCCCCCCceeccCCchhHHHHHHHHH
Q 014163 264 -RLP---LVKSINVSGHKYGL-VYAGVGWVVWRTKDDL------PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF 332 (429)
Q Consensus 264 -~~~---~~d~~~~s~hK~~~-~p~g~g~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al 332 (429)
... ..+.+..+.+|+++ ++.++|+++++++ .. ...+..... ... .++.+.....++..++
T Consensus 219 ~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~a~~~~l 289 (400)
T 3asa_A 219 FEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQE-LTYADGHFVIQDWERFL-------STT-FNGASIPAQEAGVAGL 289 (400)
T ss_dssp GGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTT-CBCTTSCBHHHHHHHHH-------HHH-CCCCCHHHHHHHHHHH
T ss_pred hhCCCCCCceEEEecchhhcCCcchheeEEeeChh-hccchhhhHHHHHHHHh-------ccC-ccCCChHHHHHHHHHh
Confidence 121 24577888999875 6778999887543 21 011100000 000 0122222222233333
Q ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEE-ecCCCCCCHHHHHHHHHHHHhccCceecccCC
Q 014163 333 IRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFS-LKDSSAHTVFEISEGLRKKLNRFQVVYPQKLP 411 (429)
Q Consensus 333 ~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~-~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~ 411 (429)
+. ..+++..++..++++++.+.|++.+ +++..+. ..+++.++ ++. +.+..++.+.|.+ ++|+.+.+...
T Consensus 290 ~~---~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~---~~gv~v~~g~~ 359 (400)
T 3asa_A 290 SI---LPQLEAIHYYRENSDLLRKALLATG-FEVFGGE-HAPYLWVKPTQA--NISDRDLFDFFLR---EYHIAITPGIG 359 (400)
T ss_dssp HH---TTTCHHHHHHHHHHHHHHHHHHHTT-CEEEECS-SSSEEEEECCCT--TCCTTTHHHHHHH---HHSEECEEGGG
T ss_pred Cc---HHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCC-CceEEEEeccCC--CCCHHHHHHHHHH---hCCEEEeChhH
Confidence 32 2466778888899999999999884 8877543 45566666 532 3445567666651 45998876411
Q ss_pred CCCCCceEEEEEe
Q 014163 412 MSYPWSTKLRVIS 424 (429)
Q Consensus 412 ~~~~~~~~lRi~~ 424 (429)
....+..++|+++
T Consensus 360 f~~~~~~~iRis~ 372 (400)
T 3asa_A 360 FGRSGSGFVRFSS 372 (400)
T ss_dssp GCGGGTTCEEEEC
T ss_pred hCCCCCCEEEEEe
Confidence 1112345699985
No 163
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.87 E-value=4.2e-21 Score=183.46 Aligned_cols=291 Identities=15% Similarity=0.075 Sum_probs=196.7
Q ss_pred ccccccC-CChHHHHHHHHHHcCc-CCCCCccChhhHHHHHHHHHHHHHhhC---CCCCCCCCCCceEeCCchHHHHHHH
Q 014163 60 LASFVTT-WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFN---TPVADDKTAVGVGTVGSSEAIMLAG 134 (429)
Q Consensus 60 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g---~~~~~~~~~~~~~t~g~t~a~~~al 134 (429)
|....++ ++++.+.+++.+.+.. ....|. .++..+++ +.+++++| ++. ....+|+|+++++.+++
T Consensus 24 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~lr----~~la~~~~~~~~~~-----~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 24 LALNENPFPFPEDLVDEVFRRLNSDALRIYY-DSPDEELI----EKILSYLDTDFLSK-----NNVSVGNGADEIIYVMM 93 (335)
T ss_dssp ESSCCCSSCCCHHHHHHHHHTCCGGGGGSCC-CSSCHHHH----HHHHHHHTCSSCCG-----GGEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCchHHHH----HHHHHHcCCCCCCH-----HHEEEcCChHHHHHHHH
Confidence 4444443 3467788888887743 222232 22345555 44667777 543 24899999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
.++ . ++|+++ ++|..+...++..|++++.+|.+++ +.+|+++| +++++|++++|+||
T Consensus 94 ~~~-g---------------d~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l-----~~~~~v~l~~p~np 150 (335)
T 1uu1_A 94 LMF-D---------------RSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKD-LRIPEVNV-----GEGDVVFIPNPNNP 150 (335)
T ss_dssp HHS-S---------------EEEECS-SSCHHHHHHHHHHTCEEEECCCCTT-SCCCCCCC-----CTTEEEEEESSCTT
T ss_pred HHh-C---------------CcEEEC-CCcHHHHHHHHHcCCeEEEeccCCC-CCCCHHHc-----CCCCEEEEeCCCCC
Confidence 876 1 579999 9999999999999999999998754 67888776 57899999999999
Q ss_pred cccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEEEEEeCC
Q 014163 215 TGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGWVVWRTK 293 (429)
Q Consensus 215 tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~l~~~~~ 293 (429)
||.+.+.++|.++++.+ + ++|+|++|+.+.. .+-.. .+...+.+.+..+.+|+++ ++.++|++++++
T Consensus 151 tG~~~~~~~l~~l~~~~------~-~li~De~~~~~~~---~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~- 218 (335)
T 1uu1_A 151 TGHVFEREEIERILKTG------A-FVALDEAYYEFHG---ESYVD-FLKKYENLAVIRTFSKAFSLAAQRVGYVVASE- 218 (335)
T ss_dssp TCCCCCHHHHHHHHHTT------C-EEEEECTTHHHHC---CCCGG-GGGTCSSEEEEEESTTTTTCGGGCCEEEEECH-
T ss_pred CCCCCCHHHHHHHHHhC------C-EEEEECcchhhcc---hhHHH-HhhhCCCEEEEecchhhcCCcccCeEEEEeCH-
Confidence 99999999999999999 9 9999999986431 11011 1122346788889999875 666789998743
Q ss_pred CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCc
Q 014163 294 DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGV 373 (429)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 373 (429)
+.. +.+..... . ++.+.....++..+++. .+.+++..++..++++++.+.|++.+ +++. ++ ..
T Consensus 219 ~~~-~~l~~~~~-------~----~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~-~~-~~ 281 (335)
T 1uu1_A 219 KFI-DAYNRVRL-------P----FNVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMG-YRIT-DS-RG 281 (335)
T ss_dssp HHH-HHHHHHSC-------T----TCSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBC-CC-CS
T ss_pred HHH-HHHHHhcC-------C----CCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEc-CC-CC
Confidence 222 22211110 0 12222233333333432 34577888889999999999999884 6653 33 45
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 374 PLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 374 ~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
+++.+.++. .+..++.+.|. ++|+.+.+ ....+|++++.
T Consensus 282 ~~~~~~~~~---~~~~~~~~~l~----~~gi~v~~-------~~~~iRis~~~ 320 (335)
T 1uu1_A 282 NFVFVFMEK---EEKERLLEHLR----TKNVAVRS-------FREGVRITIGK 320 (335)
T ss_dssp SEEEEECCT---HHHHHHHHHHH----HHTEEEEE-------ETTEEEEECCC
T ss_pred eEEEEECCC---CCHHHHHHHHH----HCCEEEEE-------CCCeEEEEeCC
Confidence 566666532 23455666666 88999864 23469999865
No 164
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.87 E-value=1.3e-20 Score=183.99 Aligned_cols=299 Identities=10% Similarity=-0.005 Sum_probs=188.3
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+.........+ ..+..+++.+++++++|.+ ..++|+||++|+..++.+++..... .
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~~gt~a~~~al~~~~~~~~~---~ 120 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTLTSRAF--HSDQLGPWYEKVAKLTNKE-------MVLPMNTGAEAVETAIKTARRWAYD---V 120 (392)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTS--EETTHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred CCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHHhcCCC-------EEEEeCcHHHHHHHHHHHHHHhhhh---c
Confidence 36788888888776543221112 2233446677789999843 3899999999999999987653111 1
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhcCce-------------eEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVE-------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~-------------v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
.|.+.+++.|++..++|++....+..++.. +..++. .|+++|++++++++++|++++++|+
T Consensus 121 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~np 194 (392)
T 3ruy_A 121 KKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY------GDLEALKAAITPNTAAFILEPIQGE 194 (392)
T ss_dssp SCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT------TCHHHHHHHCCTTEEEEEECSSBST
T ss_pred cCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc------ccHHHHHHHhccCeEEEEEeCccCC
Confidence 122223468888888876543333222211 222221 2899999999989999999999999
Q ss_pred cccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCC-CCeEEEE
Q 014163 215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWVV 289 (429)
Q Consensus 215 tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p-~g~g~l~ 289 (429)
+|.+.| +++|+++|++| |+++|+|++|+++.. .......+..-...|.+++| |.+.++ .++|+++
T Consensus 195 tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~ 264 (392)
T 3ruy_A 195 AGINIPPAGFLKEALEVCKKE------NVLFVADEIQTGLGR--TGKVFACDWDNVTPDMYILG--KALGGGVFPISCAA 264 (392)
T ss_dssp TTSBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEE
T ss_pred CCCccCCHHHHHHHHHHHHHc------CCEEEEeechhCCCc--cccchhhhccCCCCCEEEEc--hhhhCChhhhEEEE
Confidence 999988 99999999999 999999999975321 11111111111236777775 876554 6789988
Q ss_pred EeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEe
Q 014163 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG--RFEIL 367 (429)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~--~~~~~ 367 (429)
.+++ .. +.+.. .... .. .+.+.....+..++++.+.. ++..++..++++++.+.|++++ .+...
T Consensus 265 ~~~~-~~-~~~~~---~~~~--~~----~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 330 (392)
T 3ruy_A 265 ANRD-IL-GVFEP---GSHG--ST----FGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEV 330 (392)
T ss_dssp ECHH-HH-TTCCT---TSSC--CS----STTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEE
T ss_pred ECHH-HH-hhhcc---CCcC--CC----CCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 7542 21 11110 0000 01 12222334444444544322 5677888999999999999873 24333
Q ss_pred eCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 368 SKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 368 ~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.+ ..+++.|.+++ +..++.+.|. ++|+.+.+. +..++|++.
T Consensus 331 ~~--~g~~~~~~~~~----~~~~l~~~l~----~~gi~v~~~------~~~~iRi~~ 371 (392)
T 3ruy_A 331 RG--KGLFIGIELNE----PARPYCEQLK----AAGLLCKET------HENVIRIAP 371 (392)
T ss_dssp EE--ETTEEEEEESS----CSHHHHHHHH----TTTEECCCB------TTTEEEECC
T ss_pred Ee--eeeEEEEEEcc----hHHHHHHHHH----HCCcEEecC------CCCEEEEEC
Confidence 22 46677777643 4567777777 999987642 245699984
No 165
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.87 E-value=1.3e-20 Score=185.86 Aligned_cols=325 Identities=14% Similarity=0.038 Sum_probs=197.7
Q ss_pred CccccccccC---CC-hHHHHHHHHHHc-C-c--CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 57 RLNLASFVTT---WM-EPECDKLVMASI-N-K--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 57 ~~~~~~~~~~---~~-~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
.++|+.+.|+ ++ ++.+.+++...+ . . ....|....+..++++. +++++|++++ .+++|+|+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~----ia~~~~~~~~-----~i~~t~G~~~ 104 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIREL----WAEALGLPAD-----LVVAQDGSSL 104 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHH----HHHHHTCCGG-----GEEECSSCHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHH----HHHHhCCChh-----HEEEecchHH
Confidence 4667777775 22 334555544332 1 1 12345444566666655 5666677652 4889999999
Q ss_pred HH--HHHHHHHHHHHHHHHHhcCCCC----CCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh-
Q 014163 129 AI--MLAGLAFKRKWQQKRKEQGKPY----DKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE- 201 (429)
Q Consensus 129 a~--~~al~a~~~~~~~~~~~~g~~~----~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~- 201 (429)
++ .+++.++...+ ..|... .++.|+++.++|..+..+++..|++++.+|++++ + +|+++|++++++
T Consensus 105 al~l~~~~~~l~~~~-----~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~-g-~d~~~l~~~l~~~ 177 (422)
T 3d6k_A 105 NIMFDLISWSYTWGN-----NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE-G-PDMGVVRELVKDP 177 (422)
T ss_dssp HHHHHHHHHHHHHCC-----TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT-E-ECHHHHHHHHTST
T ss_pred HHHHHHHHHHhcCcc-----cccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC-C-CCHHHHHHHHhcC
Confidence 97 34444443200 001000 0236999999999999999999999999999875 4 999999999986
Q ss_pred CCeEEE-EeeCCCccccccChH---HHHHHHH-HhhhccCCCccEEeecccccccccccCCCC-cc-c----cCCCCeeE
Q 014163 202 NTICVA-AILGSTLTGEFEDVK---LLHDLLT-KKNEETGWDTPIHVDAASGGFIAPFLYPDL-EW-D----FRLPLVKS 270 (429)
Q Consensus 202 ~~~~v~-~~~~~~~tG~~~~l~---~I~~la~-~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~-~----~~~~~~d~ 270 (429)
++++|+ +++++||||.+.+.+ +|+++|+ ++ ++++|+|++|+.+......... .. + ......+.
T Consensus 178 ~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~------~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (422)
T 3d6k_A 178 QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP------DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFW 251 (422)
T ss_dssp TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST------TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEE
T ss_pred CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc------CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEE
Confidence 678877 688999999997776 7777787 89 9999999999741110000000 11 1 11234567
Q ss_pred EEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH-----HHHHHHHH
Q 014163 271 INVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-----EGYKNIME 345 (429)
Q Consensus 271 ~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~-----~g~~~~~~ 345 (429)
+..+.+|+++++.++|+++.+. + +.+.+........ .+ ...+++.++...+.. +.+++..+
T Consensus 252 ~~~S~SK~~~~GlriG~~~~~~-~-l~~~l~~~~~~~~---------~~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 317 (422)
T 3d6k_A 252 FMSSTSKITHAGSGVSFFASSK-E-NIEWYASHANVRG---------IG---PNKLNQLAHAQFFGDVAGLKAHMLKHAA 317 (422)
T ss_dssp EEEESTTTSCTTSSCEEEECCH-H-HHHHHHHHHHHHC---------SC---CCHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred EEcChhhhcCcccceEEEEeCH-H-HHHHHHHHHHhhc---------CC---CCHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 7778899977778899988642 2 2222211111100 11 123345555555543 22444455
Q ss_pred HHHHHHHHHHHHHHh----CCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-C-CC-CC-CCc
Q 014163 346 NCMGNARALREGLEK----TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-L-PM-SY-PWS 417 (429)
Q Consensus 346 ~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~-~~-~~-~~~ 417 (429)
+..++++++.+.|.+ ++++++..+. ...++.++++. . +..++.+.|. ++|+.+++. . .. .. .+.
T Consensus 318 ~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~g~~~~~~~~~--~-~~~~~~~~l~----~~gV~v~~~g~~f~~~~~~~~ 389 (422)
T 3d6k_A 318 SLAPKFERVLEILDSRLSEYGVAKWTSPT-GGYFISVDVVP--G-TASRVVELAK----EAGIALTGAGSSFPLHNDPNN 389 (422)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEECCCS-BSSCEEEEEST--T-CHHHHHHHHH----HTTEECCCTTTTSGGGCCTTS
T ss_pred HHHHHHHHHHHHHHHhcCcCCceEEeCCC-cceEEEEECCC--C-CHHHHHHHHH----HCCeEEEcCccccCCCCCCCC
Confidence 555667777676654 4446655443 45566667643 1 4555666565 999998762 1 11 11 235
Q ss_pred eEEEEEec
Q 014163 418 TKLRVISH 425 (429)
Q Consensus 418 ~~lRi~~~ 425 (429)
.++|++++
T Consensus 390 ~~iRis~~ 397 (422)
T 3d6k_A 390 ENIRLAPS 397 (422)
T ss_dssp CEEEECCS
T ss_pred CeEEEecC
Confidence 67999997
No 166
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.87 E-value=4.1e-20 Score=180.38 Aligned_cols=248 Identities=15% Similarity=0.065 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH----HH
Q 014163 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----AR 172 (429)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~~ 172 (429)
.+++++++++++|.+. .+++++|++|+..++.++.. .++.|+++.+.|.++... ++
T Consensus 61 ~~~l~~~la~~~g~~~-------~i~~~sG~~ai~~~~~~~~~-------------~gd~vl~~~~~y~~~~~~~~~~~~ 120 (389)
T 3acz_A 61 VEQFEEMVCSIEGAAG-------SAAFGSGMGAISSSTLAFLQ-------------KGDHLIAGDTLYGCTVSLFTHWLP 120 (389)
T ss_dssp HHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHTTTCC-------------TTCEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchHHHHHHHHHHH
Confidence 3355667889999863 67788899999988877633 136899999999876554 57
Q ss_pred hcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccc
Q 014163 173 YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA 252 (429)
Q Consensus 173 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~ 252 (429)
..|++++.++. .|+++|++++++++++|++++++|++|.+.|+++|+++|+++ |+++|+|++|+.+..
T Consensus 121 ~~g~~~~~v~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~------~~~livD~~~~~~~~ 188 (389)
T 3acz_A 121 RFGIEVDLIDT------SDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHER------GARLVVDATFTSPCF 188 (389)
T ss_dssp HTTCEEEEECT------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECTTTCTTT
T ss_pred HcCCEEEEECC------CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHc------CCEEEEECCCccccc
Confidence 78999998875 478999999999999999999999999999999999999999 999999999986532
Q ss_pred cccCCCCccccCCCCeeEEEEcCcccCCCCCC--eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHH
Q 014163 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 253 ~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
.. ..+ .++|+++.+.||++++|.+ .|+++.++++.. +.+.......+ ++. .....|+
T Consensus 189 ---~~--~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~-~~l~~~~~~~g---------~~~---~~~~~~~ 247 (389)
T 3acz_A 189 ---LK--PLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDI-ATIKFYRKDAG---------SLM---APMDAFL 247 (389)
T ss_dssp ---CC--GGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHHC---------CCC---CHHHHHH
T ss_pred ---cC--ccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHH-HHHHHHHHhcC---------CCC---CHHHHHH
Confidence 11 112 2589999999999887766 588887541222 22211111111 111 2234555
Q ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC----------------CCceEEEEEecCCCCCCHHHHHHH
Q 014163 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD----------------VGVPLVAFSLKDSSAHTVFEISEG 394 (429)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~~~~v~f~~~~~~~~~~~~~~~~ 394 (429)
++..+. .+..++++..+++..+.+.|++.+.++-+..+ ...++++|.+++ ..++.+.
T Consensus 248 ~~~~l~--~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~~~~~~ 320 (389)
T 3acz_A 248 CARGMK--TLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-----FEAAKKL 320 (389)
T ss_dssp HHHHHT--THHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----HHHHHHH
T ss_pred HHcCcc--HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-----HHHHHHH
Confidence 554442 34566777788888999999888755433211 125688888742 2344444
Q ss_pred HHHHHhccCceecc
Q 014163 395 LRKKLNRFQVVYPQ 408 (429)
Q Consensus 395 L~~~l~~~G~~~~~ 408 (429)
|. +.|+.++.
T Consensus 321 l~----~~~i~~~~ 330 (389)
T 3acz_A 321 ME----HLKVCTLA 330 (389)
T ss_dssp HT----TCSSSEEB
T ss_pred HH----hCCCcEEC
Confidence 44 77876544
No 167
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.87 E-value=3.6e-21 Score=189.23 Aligned_cols=325 Identities=11% Similarity=0.032 Sum_probs=201.8
Q ss_pred CCCCcccccccc------CCChHHHHHHHHHHcCc--CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE--e
Q 014163 54 GNPRLNLASFVT------TWMEPECDKLVMASINK--NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--T 123 (429)
Q Consensus 54 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t 123 (429)
+...++|+.+.+ .+++|.+.+++...+.. ....|....+..++++.+.+++....|.+.+. ..+.+ |
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~---~~v~~~~t 105 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQE---KRVGGVQS 105 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEE
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCC---CcEEEEEC
Confidence 444566777664 13447788888777622 23345555677888877766665444431111 13778 9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCce-eEEEecc-CCccccCHHHHHHHhhh
Q 014163 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVE-LKEVKLE-EGYYVMNPVKAVELVDE 201 (429)
Q Consensus 124 ~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~-v~~v~~~-~~~~~~d~~~l~~~i~~ 201 (429)
+||++|+.+++..+..- . +|.....++|+++.++|..+...++..|++ ++.+|.+ ++++.+|+++|++++++
T Consensus 106 ~gg~~a~~~~~~~~~~~-~-----~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 179 (412)
T 1ajs_A 106 LGGTGALRIGAEFLARW-Y-----NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN 179 (412)
T ss_dssp EHHHHHHHHHHHHHHHH-S-----SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh-C-----cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHh
Confidence 99999999887543321 0 110000157999999999999999999999 9999984 23478999999999986
Q ss_pred ---CCeEEEEeeCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccC---CCCccc-c-CCCCeeE
Q 014163 202 ---NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY---PDLEWD-F-RLPLVKS 270 (429)
Q Consensus 202 ---~~~~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~---~~~~~~-~-~~~~~d~ 270 (429)
+++++++++++||||.+ +++++|+++|++| |+++|+|++|.++.. .. ...... + ....-++
T Consensus 180 ~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~y~~~~~--~~~~~~~~~~~~~~~~~~~~i 251 (412)
T 1ajs_A 180 APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR------FLFPFFDSAYQGFAS--GNLEKDAWAIRYFVSEGFELF 251 (412)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCEE
T ss_pred CCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEcccccccC--CcccccchHHHHHhccCCcEE
Confidence 67788899999999998 4567899999999 999999999976432 10 000111 1 1112347
Q ss_pred EEEcCcccCCC-CCCeEEEEEe--CCCC---cccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-----HHH
Q 014163 271 INVSGHKYGLV-YAGVGWVVWR--TKDD---LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG-----FEG 339 (429)
Q Consensus 271 ~~~s~hK~~~~-p~g~g~l~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~-----~~g 339 (429)
+..+.+|.++. +.++|++++. +++. +...+.....+.. ++.+.....++..+++... .+.
T Consensus 252 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~ 322 (412)
T 1ajs_A 252 CAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTW---------SNPPAQGARIVARTLSDPELFHEWTGN 322 (412)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTT---------SSCCSHHHHHHHHHHHSHHHHHHHHHH
T ss_pred EEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhccc---------CCCChHHHHHHHHHHcCcchhHHHHHH
Confidence 77889997654 6678999872 3321 1111110000100 1111123333333443221 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCC
Q 014163 340 YKNIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPW 416 (429)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~ 416 (429)
+++..++..++++++.+.|++++ ++++..+ ..+++.|. ..+...+...|. ++|+.+...
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~----~~gv~v~~~------- 384 (412)
T 1ajs_A 323 VKTMADRILSMRSELRARLEALKTPGTWNHITD--QIGMFSFT-----GLNPKQVEYLIN----QKHIYLLPS------- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH--CCSSEEEC-----CCCHHHHHHHHH----TTCEECCTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC--CCceEEEe-----CCCHHHHHHHHH----hCCEEecCC-------
Confidence 67888889999999999999876 3655433 34444442 122233333444 889987531
Q ss_pred ceEEEEEec
Q 014163 417 STKLRVISH 425 (429)
Q Consensus 417 ~~~lRi~~~ 425 (429)
+|++++
T Consensus 385 ---~Ris~~ 390 (412)
T 1ajs_A 385 ---GRINMC 390 (412)
T ss_dssp ---SEEEGG
T ss_pred ---cEEEee
Confidence 599887
No 168
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.87 E-value=3e-20 Score=180.41 Aligned_cols=317 Identities=15% Similarity=0.114 Sum_probs=194.5
Q ss_pred HHHHHHhhccCCC-CCccccccccC-CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCc
Q 014163 43 YQVINDELMLDGN-PRLNLASFVTT-WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120 (429)
Q Consensus 43 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~ 120 (429)
.+.+...+...+. |.+++.++.++ ++++.+.+++. +.. ....+++++.+++++++|.+.. ...
T Consensus 15 ~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~~------~~~~~~~~~~~~~a~~~g~~~~----~~~ 79 (374)
T 2aeu_A 15 RKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TYI------GSSYFAEKVNEYGLKHLGGDEN----DKC 79 (374)
T ss_dssp HHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----STT------HHHHHHHHHHHHHHHHHTCCTT----EEE
T ss_pred HHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hhc------CchHHHHHHHHHHHHHhCCCCc----ceE
Confidence 4455555555666 77776666543 44566777764 111 1245667888888999998411 137
Q ss_pred eEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCC---chHHHHHHHhcCceeEEEeccCCccccCHHHHHH
Q 014163 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV---QVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVE 197 (429)
Q Consensus 121 ~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~---h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~ 197 (429)
++|+||++|+..++.++ + +++|+++.++ |+++...++..|++++.+ .|+++|++
T Consensus 80 ~~~~ggt~a~~~~~~~~--~-------------gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--------~d~~~l~~ 136 (374)
T 2aeu_A 80 VGFNRTSSAILATILAL--K-------------PKKVIHYLPELPGHPSIERSCKIVNAKYFES--------DKVGEILN 136 (374)
T ss_dssp EEESSHHHHHHHHHHHH--C-------------CSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--------SCHHHHHT
T ss_pred EEEcChHHHHHHHHHhC--C-------------CCEEEEecCCCCccHHHHHHHHHcCcEEEEe--------CCHHHHHh
Confidence 89999999999998876 2 2689998884 445444778889988877 37899998
Q ss_pred HhhhCCeE-EEEeeCCCccc-cccChHHHHHHHHHhhhccCCCccEEeecccccccc-cccCCCCccccCCCCeeEEEEc
Q 014163 198 LVDENTIC-VAAILGSTLTG-EFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIA-PFLYPDLEWDFRLPLVKSINVS 274 (429)
Q Consensus 198 ~i~~~~~~-v~~~~~~~~tG-~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~s 274 (429)
+ ++++++ |++++++||+| ...++++|.++|++| |+++|+|++|+.+.. +... ..... .+.|.++.+
T Consensus 137 ~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~~~~~-~~~~~---~~~di~~~S 205 (374)
T 2aeu_A 137 K-IDKDTLVIITGSTMDLKVIELENFKKVINTAKNK------EAIVFVDDASGARVRLLFNQ-PPALK---LGADLVVTS 205 (374)
T ss_dssp T-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHTTC-CCHHH---HTCSEEEEE
T ss_pred c-CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHc------CCEEEEECCccccccccccc-CCccc---cCCcEEEec
Confidence 8 778999 99999999999 899999999999999 999999999986531 1110 00111 146899999
Q ss_pred CcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHH----
Q 014163 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN---- 350 (429)
Q Consensus 275 ~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~---- 350 (429)
+||++.+ +++|+++.++ +.. +.+.......+ ++.+.....++..+++.+..+.+++..++...+
T Consensus 206 ~sK~l~g-~~~G~~~~~~-~~~-~~l~~~~~~~~---------~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~ 273 (374)
T 2aeu_A 206 TDKLMEG-PRGGLLAGKK-ELV-DKIYIEGTKFG---------LEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSK 273 (374)
T ss_dssp TTSSSSS-CSCEEEEEEH-HHH-HHHHHHHHTTT---------CBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHH
T ss_pred CcccccC-cceEEEEECH-HHH-HHHHHhhcccc---------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999654 6889988764 222 22221111111 122223444455556555443444444444444
Q ss_pred HHHHHHHHHhC---CCeEEeeCCCCceEEEEEecCCCCCC---HHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 351 ARALREGLEKT---GRFEILSKDVGVPLVAFSLKDSSAHT---VFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 351 ~~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.+.+.+.|..+ .++.+...+ .+.+.+........+ ..++...+ +.++|+.+.+.... ..+..++|+++
T Consensus 274 ~~~l~~~L~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~l---l~~~gV~v~~g~~~-~~~~~~lRi~~ 347 (374)
T 2aeu_A 274 IEKLNKELKAIDDNINIVYERTP--TGFVIKRVYKDDTINIKKLIEIGFNL---LKNYGIITITVAGM-PGASKSLRIDL 347 (374)
T ss_dssp HHHHHHHHTTTCTTEEEEEEECS--SEEEEEEEESSHHHHHHHHHHHHHHH---HHHHCEECSTTSSS-CSSCCSEEEET
T ss_pred HHHHHHhhhhhhhccCcceeeCC--ceEEEEeecccccccccchHHHHHHH---HHhCCEEEecCCCC-CCCCCeEEEEc
Confidence 46666666654 235554333 333333322110000 01133222 23789998764211 12234699998
Q ss_pred cc
Q 014163 425 HL 426 (429)
Q Consensus 425 ~~ 426 (429)
+.
T Consensus 348 ~~ 349 (374)
T 2aeu_A 348 TS 349 (374)
T ss_dssp TS
T ss_pred CC
Confidence 74
No 169
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.86 E-value=1.6e-20 Score=187.20 Aligned_cols=295 Identities=14% Similarity=0.060 Sum_probs=183.3
Q ss_pred CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCc-
Q 014163 86 DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ- 164 (429)
Q Consensus 86 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h- 164 (429)
.|...++..+++++ +++++|.+. +++|+||++|+.+++.++.. + ++ +++.++|
T Consensus 70 ~y~~~~~~~~l~~~----la~~~~~~~-------~~~~~~gt~a~~~al~~l~~--------~-----gd--i~~~~~~~ 123 (456)
T 2ez2_A 70 AYAGSENFYHLERT----VQELFGFKH-------IVPTHQGRGAENLLSQLAIK--------P-----GQ--YVAGNMYF 123 (456)
T ss_dssp CSSSCHHHHHHHHH----HHHHHCCSE-------EEEESSHHHHHHHHHHHHCC--------T-----TC--EEEESSCC
T ss_pred hcccChhHHHHHHH----HHHHhCCCc-------EEEeCCcHHHHHHHHHHhCC--------C-----CC--Eecccccc
Confidence 34555666666654 777788753 89999999999999988743 1 23 6777787
Q ss_pred hHHHHHHHhcCceeEEEeccCC---------ccccCHHHHHHHhhhCC----eEEEEeeCCC-ccccccC---hHHHHHH
Q 014163 165 VCWEKFARYFEVELKEVKLEEG---------YYVMNPVKAVELVDENT----ICVAAILGST-LTGEFED---VKLLHDL 227 (429)
Q Consensus 165 ~s~~~~~~~~G~~v~~v~~~~~---------~~~~d~~~l~~~i~~~~----~~v~~~~~~~-~tG~~~~---l~~I~~l 227 (429)
.++..+++..|++++.++++++ ++.+|+++|++++++++ ++|++++++| ++|.+.+ +++|+++
T Consensus 124 ~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~l 203 (456)
T 2ez2_A 124 TTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVREL 203 (456)
T ss_dssp HHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHH
Confidence 7888889999999999988631 26899999999998876 8888998998 9998866 9999999
Q ss_pred HHHhhhccCCCccEEeeccccccc--------ccccCCCCcc----ccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCC
Q 014163 228 LTKKNEETGWDTPIHVDAASGGFI--------APFLYPDLEW----DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDD 295 (429)
Q Consensus 228 a~~~~~~~~~~~~l~vD~a~~~~~--------~~~~~~~~~~----~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~ 295 (429)
|++| |+++|+|++|+.+. ..+ ...... .++ ...|++++|+||++++| ..|+++.++++.
T Consensus 204 a~~~------~i~li~De~~~~g~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~ 274 (456)
T 2ez2_A 204 TEAH------GIKVFYDATRCVENAYFIKEQEQGF-ENKSIAEIVHEMF-SYADGCTMSGKKDCLVN-IGGFLCMNDDEM 274 (456)
T ss_dssp HHHT------TCCEEEECTTHHHHHHHHHHHSTTC-TTSCHHHHHHHHH-TTCSEEEEETTTTTCCS-SCEEEEESCHHH
T ss_pred HHHc------CCeEEEEcccccccccccccccccc-CCcchhhhhhhhc-ccCCEEEEeCcccCCCC-ceeEEEECCHHH
Confidence 9999 99999999997631 111 111100 011 23578888899997755 568877644332
Q ss_pred cccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce
Q 014163 296 LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGY-KNIMENCMGNARALREGLEKTGRFEILSKDVGVP 374 (429)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 374 (429)
. +.+.....+..+. .+. +..+...+.+ +++..+ +.+ ++..++..++.+++.+.|++. +++++.+. ...
T Consensus 275 ~-~~~~~~~~~~~~~-~~~---~~~~~~~~~a--~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~-~~~ 343 (456)
T 2ez2_A 275 F-SSAKELVVVYEGM-PSY---GGLAGRDMEA--MAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEPV-GGH 343 (456)
T ss_dssp H-HHHHHHHHHHTCC-TTT---TTCCHHHHHH--HHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSC-CSS
T ss_pred H-HHHHHHHhhccCc-ccc---cCcchhHHHH--HHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcC-CCccccCC-Cce
Confidence 2 2211111110010 000 1111112211 122111 222 456677778889999999886 47665443 445
Q ss_pred EEEEEecC-CCCCCHHHH-HHHHHHHH-hccCceeccc---C-C-------CCCCCceEEEEEecc
Q 014163 375 LVAFSLKD-SSAHTVFEI-SEGLRKKL-NRFQVVYPQK---L-P-------MSYPWSTKLRVISHL 426 (429)
Q Consensus 375 ~v~f~~~~-~~~~~~~~~-~~~L~~~l-~~~G~~~~~~---~-~-------~~~~~~~~lRi~~~~ 426 (429)
.+.+.+.. ..+.+..++ .+.|.++| .++|+.+... + + ....+...+|++++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~ 409 (456)
T 2ez2_A 344 AVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPR 409 (456)
T ss_dssp EEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCT
T ss_pred EEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCC
Confidence 55555531 012344555 45554444 4788875321 1 1 012234679999873
No 170
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.86 E-value=2.3e-20 Score=183.20 Aligned_cols=228 Identities=14% Similarity=0.039 Sum_probs=161.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH----HHhc
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----ARYF 174 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~~~~ 174 (429)
++++.+++++|.+. .++++||++|+.+++.++.. .+++|+++.+.|.+.... ++..
T Consensus 86 ~le~~lA~l~g~~~-------~i~~ssGt~Ai~~al~~l~~-------------~Gd~Vi~~~~~y~~~~~~~~~~l~~~ 145 (415)
T 2fq6_A 86 SLQQAMCELEGGAG-------CVLFPCGAAAVANSILAFIE-------------QGDHVLMTNTAYEPSQDFCSKILSKL 145 (415)
T ss_dssp HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHTTCC-------------TTCEEEEETTSCHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHhCCCe-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchHHHHHHHHHHHHc
Confidence 45556888999853 67778999999988887643 136899999999876544 4557
Q ss_pred CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHH--hhhccCCCccEEeecccccccc
Q 014163 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK--KNEETGWDTPIHVDAASGGFIA 252 (429)
Q Consensus 175 G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~--~~~~~~~~~~l~vD~a~~~~~~ 252 (429)
|+++++++.+ |+++|+++|+++|++|++.+++|++|.+.|+++|+++|++ + |+++|+|++|+.+..
T Consensus 146 G~~v~~v~~~------d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~------g~~livD~a~a~~~~ 213 (415)
T 2fq6_A 146 GVTTSWFDPL------IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVP------DAIIMIDNTWAAGVL 213 (415)
T ss_dssp TCEEEEECTT------CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCT------TCEEEEECTTTTTTS
T ss_pred CcEEEEECCC------CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcC------CCEEEEECCCccccc
Confidence 9999888753 7889999999999999999999999999999999999999 9 999999999985321
Q ss_pred cccCCCCccccCCCCeeEEEEcCcccCCCCCC--eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHH
Q 014163 253 PFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 253 ~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
.. +.. .++|+++.|+||+++++.+ .|+++.++ +.. ..+....... |+.. .....|.
T Consensus 214 ---~~--p~~---~g~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~-~~l~~~~~~~----------G~~~--~~~~a~~ 271 (415)
T 2fq6_A 214 ---FK--ALD---FGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCW-EQLRENAYLM----------GQMV--DADTAYI 271 (415)
T ss_dssp ---SC--GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECT-TTH-HHHHHHHHHT----------TCCC--CHHHHHH
T ss_pred ---CC--ccc---cCCeEEEEeCccccCCCCCceEEEEEeCH-HHH-HHHHHHHHhc----------CCCC--CHHHHHH
Confidence 11 111 2589999999999877654 58877654 332 2221111111 1111 1222343
Q ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-eCC---------------CCceEEEEEecC
Q 014163 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL-SKD---------------VGVPLVAFSLKD 382 (429)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~---------------~~~~~v~f~~~~ 382 (429)
.++. .+.+..++++..+++.++.+.|++.|.+.-+ .+. ...++++|.+++
T Consensus 272 ~~~~--l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g 337 (415)
T 2fq6_A 272 TSRG--LRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK 337 (415)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS
T ss_pred HHhh--hhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence 3332 2456677788888999999999998766533 221 135789999864
No 171
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.86 E-value=3.5e-20 Score=183.69 Aligned_cols=302 Identities=13% Similarity=0.028 Sum_probs=183.8
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
..+.+.+++.+++.... +...+...+++ +.+++++|.+. .+++++||+|+.+++.++...+..+
T Consensus 41 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~----~~la~~~g~~~-------~i~~~sGt~a~~~al~~l~~~~~~~--- 104 (437)
T 3bb8_A 41 IGTKELQLMVEASLDGW--LTTGRFNDAFE----KKLGEYLGVPY-------VLTTTSGSSANLLALTALTSPKLGV--- 104 (437)
T ss_dssp CCHHHHHHHHHHHHHCC--CBSCHHHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHHHTTCGGGGG---
T ss_pred CCHHHHHHHHHHHHcCC--cCCChHHHHHH----HHHHHHHCCCc-------EEEeCCHHHHHHHHHHHhhhccccc---
Confidence 34667777776665432 33445555444 55888888863 7899999999999988762100000
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHH
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDL 227 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~l 227 (429)
.+. ..+++|+++.++|.++..+++..|++++.++++++++.+|+++|+++++++|++|++++ .+|...|+++|.++
T Consensus 105 ~~~-~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l 180 (437)
T 3bb8_A 105 RAL-KPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAH---TLGNLFDLAEVRRV 180 (437)
T ss_dssp GSC-CTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHH
T ss_pred ccC-CCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhcCCCCeEEEEeC---CCCChhcHHHHHHH
Confidence 000 02368999999999999999999999999998864488999999999998899888875 46778999999999
Q ss_pred HHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEc---CcccCCCCCCeEEEEEeCCCCccccccccc
Q 014163 228 LTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS---GHKYGLVYAGVGWVVWRTKDDLPDELVFHI 304 (429)
Q Consensus 228 a~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s---~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~ 304 (429)
|+++ |+++|+|+||+.+... .. . .++ ...|+++.+ +||+ ++...|+++.++ +.+...+....
T Consensus 181 ~~~~------~~~li~D~a~~~g~~~--~~--~-~~~-~~~d~~~~s~~~~k~l--~~g~gg~~~~~~-~~~~~~~~~~~ 245 (437)
T 3bb8_A 181 ADKY------NLWLIEDCCDALGSTY--DG--K-MAG-TFGDIGTVSFYPAKHI--TMGEGGAVFTQS-AELKSIIESFR 245 (437)
T ss_dssp HHHH------TCEEEEECTTCTTCEE--TT--E-ETT-SSSSEEEEECSTTSSS--CCSSCEEEEESC-HHHHHHHHHHH
T ss_pred HHHc------CCEEEEECccccCceE--CC--e-ecc-cccCEEEEECcCCcCC--CCCCeEEEEeCC-HHHHHHHHHHH
Confidence 9999 9999999999854331 11 1 111 124554444 4554 233446666543 22222111111
Q ss_pred CCCCC--------------------CC-----CCce--eccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Q 014163 305 NYLGS--------------------DQ-----PTFT--LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (429)
Q Consensus 305 ~~~~~--------------------~~-----~~~~--~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~ 357 (429)
.+... .. ..++ ..|.......+...+++..+ +.+.+.+++.+++++++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~~~~~~~~~~~~~~~l~~~ 323 (437)
T 3bb8_A 246 DWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQL--ERIEEFVEKRKANFKYLKDA 323 (437)
T ss_dssp BTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 11100 00 0000 01111001122222333332 33466777778899999999
Q ss_pred HHhCCCeEEeeCCC-----CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccC
Q 014163 358 LEKTGRFEILSKDV-----GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKL 410 (429)
Q Consensus 358 L~~~~~~~~~~~~~-----~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~ 410 (429)
|++++++.++.... ....+.+.+..+.+.+..++.+.|. ++||.++.++
T Consensus 324 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~GI~v~~~~ 377 (437)
T 3bb8_A 324 LQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLD----EAKVGTRLLF 377 (437)
T ss_dssp GGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHH----HTTBCCBCCT
T ss_pred hhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHH----HCCCceeccC
Confidence 99987666653211 1112333333211356677777777 8999988663
No 172
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.86 E-value=5.1e-20 Score=181.61 Aligned_cols=260 Identities=15% Similarity=0.040 Sum_probs=172.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHH----Hh
Q 014163 98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RY 173 (429)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~----~~ 173 (429)
+++++.+++++|.+. .+++++|++|+..++.++.. .+++|+++.+.|.+....+ +.
T Consensus 61 ~~l~~~la~~~g~~~-------~v~~~sGt~A~~~~l~~~~~-------------~gd~vi~~~~~~~~~~~~~~~~~~~ 120 (421)
T 2ctz_A 61 DVLEKRLAALEGGKA-------ALATASGHAAQFLALTTLAQ-------------AGDNIVSTPNLYGGTFNQFKVTLKR 120 (421)
T ss_dssp HHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEECSCCCHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhCCCc-------eEEecCHHHHHHHHHHHHhC-------------CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 355566889998863 56667779999999887633 2368999999999876654 77
Q ss_pred cCceeEEE-eccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccc-cccc
Q 014163 174 FEVELKEV-KLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAAS-GGFI 251 (429)
Q Consensus 174 ~G~~v~~v-~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~-~~~~ 251 (429)
.|++++.+ +.+ |+++|+++++++|++|++++++|++|.+.|+++|+++|+++ |+++|+|++| +.+.
T Consensus 121 ~g~~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~------g~~livD~~~~~~g~ 188 (421)
T 2ctz_A 121 LGIEVRFTSREE------RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREK------GVALIVDNTFGMGGY 188 (421)
T ss_dssp TTCEEEECCTTC------CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH------TCEEEEECGGGGGGT
T ss_pred cCCEEEEECCCC------CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHc------CCEEEEECCcccccc
Confidence 89998888 542 79999999999999999999999999999999999999999 9999999999 6432
Q ss_pred ccccCCCCccccCCCCeeEEEEcCcccCCCCC-CeEEEEEeC--CCCc---cccccc-ccCCCCCCCC------------
Q 014163 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GVGWVVWRT--KDDL---PDELVF-HINYLGSDQP------------ 312 (429)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~-g~g~l~~~~--~~~~---~~~~~~-~~~~~~~~~~------------ 312 (429)
... .. . .++|+++++.||++++|. ++|++++.+ .++. ...+.. ...+.+....
T Consensus 189 ---~~~--~~--~-~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~ 260 (421)
T 2ctz_A 189 ---LLR--PL--A-WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKA 260 (421)
T ss_dssp ---SCC--GG--G-GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHH
T ss_pred ---cCC--cc--c-cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHH
Confidence 111 11 1 258999999999988765 477777763 2220 011110 0111110000
Q ss_pred ---CceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC-----------------CC
Q 014163 313 ---TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD-----------------VG 372 (429)
Q Consensus 313 ---~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~ 372 (429)
.....|.. ...+..|+++..+ +.+..++++..++++++.+.|+++|+++.+..+ ..
T Consensus 261 r~~~~~~~g~~--~~~~~a~~~~~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~ 336 (421)
T 2ctz_A 261 RVDGLRDQGQA--LGPFEAWVVLLGM--ETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKP 336 (421)
T ss_dssp HHTHHHHHCCC--CCHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC--CCHHHHHHHHcCc--chHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCC
Confidence 00000111 1223334444332 335666777789999999999999989877421 24
Q ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHhccCcee
Q 014163 373 VPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVY 406 (429)
Q Consensus 373 ~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~ 406 (429)
.++++|.+.+. .+-...+.+++...++.+
T Consensus 337 g~ivsf~l~~~-----~~~~~~~~~~l~~~~~~~ 365 (421)
T 2ctz_A 337 GAVLTFGLKGG-----YEAAKRFISRLKLISHLA 365 (421)
T ss_dssp CSEEEEEETTH-----HHHHHHHHHTCSSSEECS
T ss_pred ceEEEEEeCCC-----HHHHHHHHHhCCcceecc
Confidence 67899998631 123444554444544433
No 173
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.86 E-value=4e-20 Score=184.79 Aligned_cols=314 Identities=11% Similarity=0.024 Sum_probs=186.0
Q ss_pred HHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 014163 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG 149 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g 149 (429)
+.+.+++...+......|...++..+++ +++++++|.+. +++|+|||+|+.+++.+++.... .+|
T Consensus 55 ~~v~~a~~~~~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-------v~~t~ggt~A~~~al~~~~~~~~----~~G 119 (467)
T 1ax4_A 55 NAMSDHQWAAMITGDEAYAGSRNYYDLK----DKAKELFNYDY-------IIPAHQGRGAENILFPVLLKYKQ----KEG 119 (467)
T ss_dssp CCEEHHHHHHHHTCCCCSSSCHHHHHHH----HHHHHHHCCCE-------EEEESSHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHhhcccccccCccHHHHH----HHHHHHcCCCc-------EEEcCCcHHHHHHHHHHHHHhhc----cCC
Confidence 4455555555443333454555555555 45777788743 89999999999999998875211 022
Q ss_pred CCCCCcE---EEEcCCCchHHHHHHHhcCceeEEEeccC---------CccccCHHHHHHHhhh----CCeEEEEeeCCC
Q 014163 150 KPYDKPN---IVTGANVQVCWEKFARYFEVELKEVKLEE---------GYYVMNPVKAVELVDE----NTICVAAILGST 213 (429)
Q Consensus 150 ~~~~~~~---vi~~~~~h~s~~~~~~~~G~~v~~v~~~~---------~~~~~d~~~l~~~i~~----~~~~v~~~~~~~ 213 (429)
++ |+++.+.|.++..++...|.+++.++.+. .++.+|+++|++++++ ++++|+++.++|
T Consensus 120 -----d~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~n 194 (467)
T 1ax4_A 120 -----KAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCN 194 (467)
T ss_dssp -----CCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBT
T ss_pred -----CccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEecccc
Confidence 34 77774334566777888898887765431 1357999999999985 689999999999
Q ss_pred cc-ccc---cChHHHHHHHHHhhhccCCCccEEeeccccc-ccc-------cccCCCCccccC---CCCeeEEEEcCccc
Q 014163 214 LT-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHKY 278 (429)
Q Consensus 214 ~t-G~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~-~~~-------~~~~~~~~~~~~---~~~~d~~~~s~hK~ 278 (429)
++ |.+ +++++|+++|++| |+++|+|++++. +.. .+..... .++. ...+|+++++.||+
T Consensus 195 p~gG~~~~~~~l~~i~~la~~~------gi~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~s~sK~ 267 (467)
T 1ax4_A 195 SAGGQPVSMSNLKEVYEIAKQH------GIFVVMDSARFCENAYFIKARDPKYKNATI-KEVIFDMYKYADALTMSAKKD 267 (467)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHH------TCCEEEECTTHHHHHHHHHHHCGGGTTCCH-HHHHHHHGGGCSEEEEETTST
T ss_pred CCCccCCChhHHHHHHHHHHHc------CCEEEEEchhhhhcchhccccccccCCCch-hhhhhhhccccceEEEecccc
Confidence 99 775 5678999999999 999999998753 111 1111000 0110 02478899999999
Q ss_pred CCCCCCeEEEEEeCC-CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Q 014163 279 GLVYAGVGWVVWRTK-DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (429)
Q Consensus 279 ~~~p~g~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~ 357 (429)
++.|.| |+++.+++ +.. +.+........+ ..++ ++.+.....++..+++.... ++.+++..++++++.+.
T Consensus 268 ~g~~~G-g~~~~~d~~~l~-~~~~~~~~~~~~-~~~~---~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~ 338 (467)
T 1ax4_A 268 PLLNIG-GLVAIRDNEEIF-TLARQRCVPMEG-FVTY---GGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDR 338 (467)
T ss_dssp TCCSSC-EEEEESSCHHHH-HHHHHHHHHHTC-STTT---TTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCcc-eEEEeCCHHHHH-HHHHhhcccccc-cccc---CCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHH
Confidence 876655 66655434 332 221111111111 1111 23332223333334443221 22444455778889999
Q ss_pred HHhCCCeEEeeCCCCceEEEEEec------CCCCCCHHHHHHHH-HHHHhccCceecc-c-C--CC----C---CCCceE
Q 014163 358 LEKTGRFEILSKDVGVPLVAFSLK------DSSAHTVFEISEGL-RKKLNRFQVVYPQ-K-L--PM----S---YPWSTK 419 (429)
Q Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~------~~~~~~~~~~~~~L-~~~l~~~G~~~~~-~-~--~~----~---~~~~~~ 419 (429)
|++ ++++++.+. ....+.+.+. +..+.+..++.+.| . ++|+.+.+ . . .. . .....+
T Consensus 339 L~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~ 412 (467)
T 1ax4_A 339 LRE-AGIPIQYPT-GGHAVFVDCKKLVPQIPGDQFPAQAVINALYL----ESGVRAVEIGSFLLGRDPATGEQKHADMEF 412 (467)
T ss_dssp HHH-TTCCBCSSC-CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHH----HHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred HHh-CCCCcccCC-CceEEEEehhhhccccccCCCCHHHHHHHHHH----hcCceeeecCccccccccccccccccccce
Confidence 988 457766443 4455555521 11123345666666 5 88998875 2 1 00 0 012368
Q ss_pred EEEEec
Q 014163 420 LRVISH 425 (429)
Q Consensus 420 lRi~~~ 425 (429)
+|+++.
T Consensus 413 iRls~~ 418 (467)
T 1ax4_A 413 MRLTIA 418 (467)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999986
No 174
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.85 E-value=2.9e-20 Score=181.65 Aligned_cols=301 Identities=13% Similarity=0.011 Sum_probs=186.1
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
++|.+.+++.+.+.........+ .....+++++++++++|.+. ..+++|+||++|+.+++.+++.. .
T Consensus 62 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~~a~~~al~~~~~~-~----- 128 (395)
T 1vef_A 62 GNPEVVEAVKRQAETLMAMPQTL--PTPMRGEFYRTLTAILPPEL-----NRVFPVNSGTEANEAALKFARAH-T----- 128 (395)
T ss_dssp TCHHHHHHHHHHHHHCCCCCTTS--CCHHHHHHHHHHHHTSCTTE-----EEEEEESSHHHHHHHHHHHHHHH-H-----
T ss_pred CCHHHHHHHHHHHHhCCCCcccc--CCHHHHHHHHHHHHhcCCCc-----CEEEEcCcHHHHHHHHHHHHHHH-h-----
Confidence 56778888877775432111111 23455677788999997643 23899999999999999876421 0
Q ss_pred cCCCCCCcEEEEcCCCc-hHHHHHHHhcCceeE---EEeccCCc---cccCHHHHHHHhhhCCeEEEEeeCCCccccccC
Q 014163 148 QGKPYDKPNIVTGANVQ-VCWEKFARYFEVELK---EVKLEEGY---YVMNPVKAVELVDENTICVAAILGSTLTGEFED 220 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h-~s~~~~~~~~G~~v~---~v~~~~~~---~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 220 (429)
.+++|++++++| .++..++...|.+.. .+|+..+. ...|+++|++++++++++|+++.++++||.+.|
T Consensus 129 -----~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 203 (395)
T 1vef_A 129 -----GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPA 203 (395)
T ss_dssp -----SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEEC
T ss_pred -----CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCC
Confidence 124677766654 455556666676521 11221110 025899999999988888888887889999877
Q ss_pred ----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCc
Q 014163 221 ----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDL 296 (429)
Q Consensus 221 ----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~ 296 (429)
+++|+++|++| |+++|+|++|+++.. .......+..-...|++++ +|++++|.++|+++++++ +
T Consensus 204 ~~~~l~~i~~l~~~~------~~~li~Dea~~~~~~--~g~~~~~~~~~~~~d~~s~--sK~~~~g~~~G~~~~~~~--~ 271 (395)
T 1vef_A 204 TPEFLRAAREITQEK------GALLILDEIQTGMGR--TGKRFAFEHFGIVPDILTL--AKALGGGVPLGVAVMREE--V 271 (395)
T ss_dssp CHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHH--H
T ss_pred CHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CCchhHhhhcCCCCCEEEE--cccccCCCceEEEEehHH--H
Confidence 99999999999 999999999985321 1111111111123676644 898888889999998753 2
Q ss_pred ccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCC--eEEeeCCCCce
Q 014163 297 PDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR--FEILSKDVGVP 374 (429)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~ 374 (429)
.+.+.. .... .+ .+.+.....++.++++.+.. ++..++..++++++.+.|++++. +... ++ ..+
T Consensus 272 ~~~l~~--~~~~---~~----~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~-~g~ 337 (395)
T 1vef_A 272 ARSMPK--GGHG---TT----FGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREV-RG-MGL 337 (395)
T ss_dssp HHTSCT--TSSC---CS----STTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EE-ETT
T ss_pred Hhhhcc--CCcC---CC----cCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EE-EEE
Confidence 222211 0000 01 12222334444555554432 35677888899999999998763 1111 12 346
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 375 LVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 375 ~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
++.+.++. +..++.+.|.+ ++|+.+... +...+|++++
T Consensus 338 ~~~~~~~~----~~~~l~~~l~~---~~gi~v~~~------~~~~iRi~~~ 375 (395)
T 1vef_A 338 MVGLELKE----KAAPYIARLEK---EHRVLALQA------GPTVIRFLPP 375 (395)
T ss_dssp EEEEEESS----CSHHHHHHHHH---HHCEECEES------STTEEEECCC
T ss_pred EEEEEEcC----hHHHHHHHHHH---HCCeEEecC------CCCEEEEeCC
Confidence 77787743 13444444431 679887642 3457999864
No 175
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.85 E-value=1.7e-19 Score=175.80 Aligned_cols=247 Identities=17% Similarity=0.035 Sum_probs=170.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH----HHHhc
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARYF 174 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~~~ 174 (429)
++++.+++++|.+. .+++++|++|+.+++.++.. .++.|+++.++|.+... .++..
T Consensus 56 ~l~~~la~~~~~~~-------~i~~~sGt~a~~~~~~~~~~-------------~g~~vl~~~~~~~~~~~~~~~~~~~~ 115 (386)
T 1cs1_A 56 VVQRALAELEGGAG-------AVLTNTGMSAIHLVTTVFLK-------------PGDLLVAPHDCYGGSYRLFDSLAKRG 115 (386)
T ss_dssp HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEETTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCc-------EEEeCCHHHHHHHHHHHHhC-------------CCCEEEEecCCcHhHHHHHHHHHHhc
Confidence 45566888888762 44455569999999888743 13689999999987443 34677
Q ss_pred CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccc
Q 014163 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF 254 (429)
Q Consensus 175 G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~ 254 (429)
|++++.++.+ |+++|++++++++++|++++++|++|.+.|+++|.++|+++ |+++|+|++|+.+...
T Consensus 116 g~~~~~~~~~------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~------~~~li~De~~~~~~~~- 182 (386)
T 1cs1_A 116 CYRVLFVDQG------DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV------GAVSVVDNTFLSPALQ- 182 (386)
T ss_dssp SCEEEEECTT------CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTCTTTC-
T ss_pred CCEEEEeCCC------CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHc------CCEEEEECCCcccccC-
Confidence 9988888753 78999999999999999999999999999999999999999 9999999999875431
Q ss_pred cCCCCccccCCCCeeEEEEcCcccCCCCCCe--EEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHH
Q 014163 255 LYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQF 332 (429)
Q Consensus 255 ~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~--g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al 332 (429)
. ... .++|+++.+.||++++|.+. |+++.++++.. +.+.......+ ++. ....+++++
T Consensus 183 --~--~~~---~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~-~~l~~~~~~~~---------~~~---~~~~~~~~~ 242 (386)
T 1cs1_A 183 --N--PLA---LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV-TELAWWANNIG---------VTG---GAFDSYLLL 242 (386)
T ss_dssp --C--GGG---GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHH-HHHHHHHHHHT---------CBC---CHHHHHHHH
T ss_pred --C--ccc---cCceEEEEcCcccccCCCCceeEEEEeCcHHHH-HHHHHHHHhcC---------CCC---CHHHHHHHH
Confidence 1 111 25899999999998877653 88887542222 22111100000 111 222344444
Q ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCC----------------CCceEEEEEecCCCCCCHHHHHHHHH
Q 014163 333 IRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD----------------VGVPLVAFSLKDSSAHTVFEISEGLR 396 (429)
Q Consensus 333 ~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----------------~~~~~v~f~~~~~~~~~~~~~~~~L~ 396 (429)
..+ +.+.+..++..++++++.+.|++++.+.-+..+ ...++++|.+.+ ...++.+.|.
T Consensus 243 ~~l--~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~ 316 (386)
T 1cs1_A 243 RGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG----DEQTLRRFLG 316 (386)
T ss_dssp HHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----CHHHHHHHHH
T ss_pred hcc--cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC----CHHHHHHHHH
Confidence 333 235666777888899999999888766433211 126788888753 1445555565
Q ss_pred HHHhccCceecc
Q 014163 397 KKLNRFQVVYPQ 408 (429)
Q Consensus 397 ~~l~~~G~~~~~ 408 (429)
++|+.++.
T Consensus 317 ----~~gi~~~~ 324 (386)
T 1cs1_A 317 ----GLSLFTLA 324 (386)
T ss_dssp ----TCSSSEEB
T ss_pred ----hCCcceEc
Confidence 89998763
No 176
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.85 E-value=1.1e-20 Score=185.15 Aligned_cols=322 Identities=11% Similarity=0.049 Sum_probs=199.5
Q ss_pred CCCC-Ccccccccc-CC-----ChHHHHHHHHHHcCc-CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE--
Q 014163 53 DGNP-RLNLASFVT-TW-----MEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG-- 122 (429)
Q Consensus 53 ~~~~-~~~~~~~~~-~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~-- 122 (429)
...| .++|+.+.+ +. ..+.+.+++...... ....|....+..++++++.+++.+.+|.+.+. ..+.+
T Consensus 25 ~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~v~ 101 (401)
T 7aat_A 25 DTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKS---GRYVTVQ 101 (401)
T ss_dssp CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEE
T ss_pred CCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCcccccc---CceEEEe
Confidence 3344 366666665 22 124577777666542 23345555678888888888887666643211 12655
Q ss_pred eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc-CCccccCHHHHHHHhh-
Q 014163 123 TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVD- 200 (429)
Q Consensus 123 t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~- 200 (429)
|+|+++|+.+++.++..... .++.|+++.++|..+...++..|++++.+|++ ++++.+|++++++.++
T Consensus 102 t~G~~~al~~~~~~l~~~~~----------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 171 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRFFK----------FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK 171 (401)
T ss_dssp EEHHHHHHHHHHHHHHHHCT----------TCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred cCcchHHHHHHHHHHHHhcc----------CCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh
Confidence 99999999998877653100 13689999999999999999999999999985 3347899998877775
Q ss_pred --hCCeEEEEeeCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCC---CCccc--cCCCCeeE
Q 014163 201 --ENTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP---DLEWD--FRLPLVKS 270 (429)
Q Consensus 201 --~~~~~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---~~~~~--~~~~~~d~ 270 (429)
++++++++++++||||.+ +++++|+++|++| |+++++|++|..+.. ... ..... .....-..
T Consensus 172 ~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i 243 (401)
T 7aat_A 172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR------NLLAYFDMAYQGFAS--GDINRDAWALRHFIEQGIDVV 243 (401)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCCE
T ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEccccccccC--CCccccHHHHHHHHhcCCcEE
Confidence 467899999999999976 5688999999999 999999999986432 100 00000 01223456
Q ss_pred EEEcCcccCC-CCCCeEEEEEeCCC-Ccccccccc-cCCCCCCCCCceeccCCchhHHHHHHHHHHHcC--------HHH
Q 014163 271 INVSGHKYGL-VYAGVGWVVWRTKD-DLPDELVFH-INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEG 339 (429)
Q Consensus 271 ~~~s~hK~~~-~p~g~g~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~--------~~g 339 (429)
+..+.+|.++ ++.++|+++..... .....+... ...... . .... ....+.++...+. .+.
T Consensus 244 ~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 314 (401)
T 7aat_A 244 LSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRP-----M-YSNP---PMNGARIASLILNTPELRKEWLVE 314 (401)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHH-----H-HSSC---CHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHh-----c-cCCC---ChHHHHHHHHHhCCHHHHHHHHHH
Confidence 6778899764 67789998863211 100000000 000000 0 0111 1222333322221 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCC
Q 014163 340 YKNIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPW 416 (429)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~ 416 (429)
+++..++..++++++.+.|++++ ++++..+ ..+++.|. +.+.+.+...|. ++|+.+...
T Consensus 315 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~ll~----~~gi~v~~~------- 376 (401)
T 7aat_A 315 VKGMADRIISMRTQLVSNLKKEGSSHNWQHITD--QIGMFCFT-----GLKPEQVERLTK----EFSIYMTKD------- 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH--CCSSEEEC-----CCCHHHHHHHHH----HHCEECCTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCceecC--CcceEEec-----CCCHHHHHHHHH----hCCEeccCC-------
Confidence 66777888899999999999874 2443322 34555553 223333332334 789886421
Q ss_pred ceEEEEEec
Q 014163 417 STKLRVISH 425 (429)
Q Consensus 417 ~~~lRi~~~ 425 (429)
+|++++
T Consensus 377 ---~Ris~~ 382 (401)
T 7aat_A 377 ---GRISVA 382 (401)
T ss_dssp ---CEEEGG
T ss_pred ---CeEEec
Confidence 588886
No 177
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.85 E-value=4.5e-21 Score=188.54 Aligned_cols=322 Identities=11% Similarity=0.006 Sum_probs=200.1
Q ss_pred CCCCcccccccc---C---CChHHHHHHHHH-HcCcC-CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE--e
Q 014163 54 GNPRLNLASFVT---T---WMEPECDKLVMA-SINKN-YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--T 123 (429)
Q Consensus 54 ~~~~~~~~~~~~---~---~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t 123 (429)
+...++|+.+.+ . ++++.+.+++.. .+... ...|....+..++++.+.+++....|.+.+. ..+.+ |
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~---~~i~~~~t 104 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQE---DRVISVQS 104 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHT---TCEEEEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCc---ceEEEEec
Confidence 334456666654 1 345678888888 77532 2335455678888888877776555532111 13778 9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEec-cCCccccCHHHHHHHhhhC
Q 014163 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDEN 202 (429)
Q Consensus 124 ~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~l~~~i~~~ 202 (429)
+|+++|+.+++..+..- . .++.|+++.++|..+...++..|++++.+|. +++++.+|+++|+++++++
T Consensus 105 ~g~~~a~~~~~~~~~~~-~----------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 105 LSGTGALHISAKFFSKF-F----------PDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA 173 (412)
T ss_dssp EHHHHHHHHHHHHHHHH-C----------TTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS
T ss_pred cchHhHHHHHHHHHHHh-C----------CCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhC
Confidence 99999999875443221 0 1257999999999999999999999999998 5434789999999999874
Q ss_pred ---CeEEEEeeCCCcccccc---ChHHHHHHHHHhhhccCCCccEEeeccccccccccc-CCCCcc-cc-CCCC---eeE
Q 014163 203 ---TICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEW-DF-RLPL---VKS 270 (429)
Q Consensus 203 ---~~~v~~~~~~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~-~~-~~~~---~d~ 270 (429)
+.++++++++||||.+. ++++|+++|++| |+++++|++|+++...-. .+.... ++ .... -+.
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 247 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK------NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVF 247 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEE
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceE
Confidence 45555699999999985 467889999999 999999999976431000 000011 11 1111 356
Q ss_pred EEEcCcccCCC-CCCeEEEE--E----eCCCC---cccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC----
Q 014163 271 INVSGHKYGLV-YAGVGWVV--W----RTKDD---LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG---- 336 (429)
Q Consensus 271 ~~~s~hK~~~~-p~g~g~l~--~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~---- 336 (429)
+..+.+|.++. +.++|+++ . ++++. +...+........ .+.+.....++..+++...
T Consensus 248 ~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~ 318 (412)
T 1yaa_A 248 VCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEV---------SNPPAYGAKIVAKLLETPELTEQ 318 (412)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTT---------SSCCHHHHHHHHHHHHSHHHHHH
T ss_pred EEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhcc---------CCCChHHHHHHHHHhCCHHHHHH
Confidence 67788997754 56689987 4 13220 1111111000000 1111122222333333211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCC
Q 014163 337 -FEGYKNIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPM 412 (429)
Q Consensus 337 -~~g~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~ 412 (429)
.+.+++..++..++++++.+.|++++ ++++..+ ..++++|. +.+...+...|. ++|+.+..
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~----~~gi~v~~---- 383 (412)
T 1yaa_A 319 WHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN--QCGMFSFT-----GLTPQMVKRLEE----THAVYLVA---- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH--CCSSEEEC-----CCCHHHHHHHHH----HHCEECCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc--CceEEEee-----CCCHHHHHHHHH----hCCEEecc----
Confidence 23577888888999999999999876 3655433 34555442 123344433343 78998753
Q ss_pred CCCCceEEEEEec
Q 014163 413 SYPWSTKLRVISH 425 (429)
Q Consensus 413 ~~~~~~~lRi~~~ 425 (429)
.+|++++
T Consensus 384 ------~~Ris~~ 390 (412)
T 1yaa_A 384 ------SGRASIA 390 (412)
T ss_dssp ------TSEEEGG
T ss_pred ------CcEEEEc
Confidence 2699987
No 178
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.85 E-value=9.7e-21 Score=185.00 Aligned_cols=315 Identities=12% Similarity=-0.010 Sum_probs=197.8
Q ss_pred CCccccccc---cC---CChHHHHHHHHHHcCc-CCCCCccChhhHHHHHHHHHHHHHhhCC--CCCCCCCCCceE--eC
Q 014163 56 PRLNLASFV---TT---WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNT--PVADDKTAVGVG--TV 124 (429)
Q Consensus 56 ~~~~~~~~~---~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~--~~~~~~~~~~~~--t~ 124 (429)
..++|+.+. +. +++|.+.+++.+.+.. ....|...++..++++++.+++.+..+. +.+ ...+ |+
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~-----~v~~~~~~ 101 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDK-----RARTAQTP 101 (396)
T ss_dssp -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTT-----CEEEEEES
T ss_pred CceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccc-----cEEEEecc
Confidence 345566665 22 3457788887776543 2234555567788888877766443221 121 2666 99
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhh--
Q 014163 125 GSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDE-- 201 (429)
Q Consensus 125 g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~-- 201 (429)
|+++|+.+++.++..- . .+++|+++.++|..+...++..|++++.+|.++ +++.+|+++|++++++
T Consensus 102 g~~~a~~~~~~~~~~~-~----------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 170 (396)
T 2q7w_A 102 GGTGALRVAADFLAKN-T----------SVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQ 170 (396)
T ss_dssp HHHHHHHHHHHHHHHH-S----------CCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCC
T ss_pred cchhhHHHHHHHHHHh-C----------CCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCC
Confidence 9999999988776431 0 136899999999999999999999999999852 3478999999999975
Q ss_pred -CCeEEEEeeCCCcccccc---ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cC-CCCeeEEEEcC
Q 014163 202 -NTICVAAILGSTLTGEFE---DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSG 275 (429)
Q Consensus 202 -~~~~v~~~~~~~~tG~~~---~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~d~~~~s~ 275 (429)
+++++++++++||||.+. ++++|+++|++| |+++++|++|+++............ +. ...-+.+..+.
T Consensus 171 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 244 (396)
T 2q7w_A 171 AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK------GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSY 244 (396)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEec
Confidence 367888899999999985 466899999999 9999999999864320000000011 11 11245677788
Q ss_pred cccCC-CCCCeEEEEE--eCCC---CcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH--------HHHH
Q 014163 276 HKYGL-VYAGVGWVVW--RTKD---DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF--------EGYK 341 (429)
Q Consensus 276 hK~~~-~p~g~g~l~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~--------~g~~ 341 (429)
+|.++ ++.++|++++ .+++ .+...+........ ++. ..+++.++...+.. +.++
T Consensus 245 sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~l~~~~~~~~~ 312 (396)
T 2q7w_A 245 SXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANY---------SNP---PAHGASVVATILSNDALRAIWEQELT 312 (396)
T ss_dssp TTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTT---------SSC---CHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhcc---------CCC---CcHHHHHHHHHhcChhhHHHHHHHHH
Confidence 99876 5677899886 2321 11111110000000 111 22233344444321 3566
Q ss_pred HHHHHHHHHHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCce
Q 014163 342 NIMENCMGNARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWST 418 (429)
Q Consensus 342 ~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~ 418 (429)
+..++..++++++.+.|++++ ++++..+ ..++++|. ..+...+.+.|. ++|+.+.. +
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~l~----~~gv~v~~-------~-- 372 (396)
T 2q7w_A 313 DMRQRIQRMRQLFVNTLQEKGANRDFSFIIK--QNGMFSFS-----GLTKEQVLRLRE----EFGVYAVA-------S-- 372 (396)
T ss_dssp HC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH--CCSSEEEC-----CCCHHHHHHHHH----HHCEECCT-------T--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecC--CCceEEEe-----cCCHHHHHHHHH----hcCeeecC-------C--
Confidence 777888899999999999886 3554433 34444442 122234444444 88998753 1
Q ss_pred EEEEEec
Q 014163 419 KLRVISH 425 (429)
Q Consensus 419 ~lRi~~~ 425 (429)
+|++++
T Consensus 373 -~Ris~~ 378 (396)
T 2q7w_A 373 -GRVNVA 378 (396)
T ss_dssp -CEEEGG
T ss_pred -ceEEEe
Confidence 599987
No 179
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.85 E-value=1.7e-19 Score=176.37 Aligned_cols=297 Identities=11% Similarity=-0.015 Sum_probs=188.4
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
++|.+.+++.+.+.........+ ..+..+++++++++++|.+ .+.+|+||++|+..++.+++..... ..
T Consensus 57 ~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~gg~~a~~~al~~~~~~~~~--~~ 125 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKLIHCSNLF--WNRPQMELAELLSKNTFGG-------KVFFANTGTEANEAAIKIARKYGKK--KS 125 (397)
T ss_dssp TCHHHHHHHHHHHHHCSCCCTTS--EEHHHHHHHHHHHHTTTSC-------EEEEESSHHHHHHHHHHHHHHHHHH--HC
T ss_pred CCHHHHHHHHHHHHhcccCcccc--CCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc--CC
Confidence 45778888877765432111112 2345557778899988853 2899999999999999887542110 00
Q ss_pred cCCCCCCcEEEEcCC-CchHHHHHHHhcCce------------eEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 148 QGKPYDKPNIVTGAN-VQVCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~-~h~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
+ ++++|+++++ .|.++..+++..|.+ +..+|. .|+++|++++++++++|+++.++||
T Consensus 126 ~----~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~np 195 (397)
T 2ord_A 126 E----KKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF------NNVEDLRRKMSEDVCAVFLEPIQGE 195 (397)
T ss_dssp T----TCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT------TCHHHHHHHCCTTEEEEEECSEECT
T ss_pred C----CCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC------CCHHHHHHHhhcCeEEEEEecccCC
Confidence 1 1245666655 455566567777765 555553 3899999999989999999999999
Q ss_pred ccc----ccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcc-ccCCCCeeEEEEcCcccCCCCCCeEEEE
Q 014163 215 TGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVYAGVGWVV 289 (429)
Q Consensus 215 tG~----~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~s~hK~~~~p~g~g~l~ 289 (429)
||. .+++++|+++|++| |+++++|++|+++.. ....... .++. ..|.+++ +|+++++.++|+++
T Consensus 196 tG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~~ 264 (397)
T 2ord_A 196 SGIVPATKEFLEEARKLCDEY------DALLVFDEVQCGMGR--TGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAVI 264 (397)
T ss_dssp TTCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--CccchhhhhhCC-CCCeeee--ccccCCCcCeEEEE
Confidence 999 37899999999999 999999999985321 1111111 1121 2676655 58887888899998
Q ss_pred EeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeE
Q 014163 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GRFE 365 (429)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~~ 365 (429)
++++ .. .+.. ... ..+ .+.+.....++.++++.+.. ++..++..++++++.+.|+++ +.+.
T Consensus 265 ~~~~-~~--~l~~--~~~---~~~----~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 329 (397)
T 2ord_A 265 VNER-AN--VLEP--GDH---GTT----FGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVA 329 (397)
T ss_dssp ECST-TC--CCCT--TSS---CCS----STTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred EchH-hc--ccCC--CCc---CCC----CCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 8653 22 2211 000 011 12222334444555555443 356677888888888888765 3222
Q ss_pred EeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.. ++ ..+++.|.+.. ..+..++.+.|. ++|+.+... +...+|++++
T Consensus 330 ~~-~~-~g~~~~~~~~~--~~~~~~l~~~l~----~~gi~v~~~------~~~~iRis~~ 375 (397)
T 2ord_A 330 DV-RG-MGLMIGIQFRE--EVSNREVATKCF----ENKLLVVPA------GNNTIRFLPP 375 (397)
T ss_dssp EE-EE-ETTEEEEEECT--TSCHHHHHHHHH----HTTEECEEE------TTTEEEECCC
T ss_pred EE-EE-EeEEEEEEECC--hHHHHHHHHHHH----HCCCEEccC------CCCEEEEECC
Confidence 22 22 45677777753 245677777777 899987642 2456999853
No 180
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.85 E-value=8e-20 Score=181.72 Aligned_cols=323 Identities=13% Similarity=0.078 Sum_probs=195.5
Q ss_pred cCCCCC-cccccccc-CC-----ChHHHHHHHHHHc--C-cCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCce
Q 014163 52 LDGNPR-LNLASFVT-TW-----MEPECDKLVMASI--N-KNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGV 121 (429)
Q Consensus 52 ~~~~~~-~~~~~~~~-~~-----~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~ 121 (429)
..++|. ++|+.+.+ +. ..+.+.+++.... + .....|....+..++++++.+++ +|.+....+...+.
T Consensus 45 ~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 45 ADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRIA 121 (448)
T ss_dssp HCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCEE
T ss_pred hCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCCccccCcCcEE
Confidence 345554 67777766 32 2355666655444 1 22234555567777777765555 37652100001377
Q ss_pred E--eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHH----hcCceeEEEec-cCC-ccccCHH
Q 014163 122 G--TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFAR----YFEVELKEVKL-EEG-YYVMNPV 193 (429)
Q Consensus 122 ~--t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~----~~G~~v~~v~~-~~~-~~~~d~~ 193 (429)
+ |+||++|+.+++..... .. .++.|++++++|..+...++ ..|++++.+|+ +++ ++.+|++
T Consensus 122 ~~~t~ggt~al~l~~~~~~~-~~----------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e 190 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHL-WM----------PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFS 190 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHH-HC----------TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHH
T ss_pred EEECCcHHHHHHHHHHHHHH-hC----------CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHH
Confidence 7 99999999875432211 10 13689999999999999999 99999999998 554 5899999
Q ss_pred HHHHHhhh---CCeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeeccccccccccc-CCCCccc-c-C
Q 014163 194 KAVELVDE---NTICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD-F-R 264 (429)
Q Consensus 194 ~l~~~i~~---~~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~-~-~ 264 (429)
+|++++++ +++++++++++||||.+.+ +++|+++|++| ++++++|++|.++...-. .+..... + .
T Consensus 191 ~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~------~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 264 (448)
T 3meb_A 191 NTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK------KHIAFFDSAYQGFATGSFEADAFAVRMFVD 264 (448)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTSSSCHHHHTHHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC------CCEEEEecccccccCCCcccCchhHHHHhh
Confidence 99999985 5788889999999999865 56699999999 999999999987432100 0000000 1 1
Q ss_pred CCCeeEEEEcCcccCC-CCCCeEEE--EE--------eCCC---CcccccccccCCCCCCCCCceeccCCchhHHHHHHH
Q 014163 265 LPLVKSINVSGHKYGL-VYAGVGWV--VW--------RTKD---DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 265 ~~~~d~~~~s~hK~~~-~p~g~g~l--~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
...-..++.|.+|.++ .+.++|++ +. .+++ .+...+........ .+ .....+++
T Consensus 265 ~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---------~~---~~~~~~~a 332 (448)
T 3meb_A 265 AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTW---------SM---SAIHGAYI 332 (448)
T ss_dssp TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTT---------SS---CCHHHHHH
T ss_pred cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhccc---------CC---ccHHHHHH
Confidence 1223455778899764 66789997 44 2221 11111110001000 11 12233444
Q ss_pred HHHHcCH--------HHHHHHHHHHHHHHHHHHHHHHhC--CC------eEEeeCCCCceEEEEEecCCCCCCHHHHHHH
Q 014163 331 QFIRLGF--------EGYKNIMENCMGNARALREGLEKT--GR------FEILSKDVGVPLVAFSLKDSSAHTVFEISEG 394 (429)
Q Consensus 331 al~~l~~--------~g~~~~~~~~~~~~~~l~~~L~~~--~~------~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~ 394 (429)
+...+.. +.+++..++..++++++.+.|+++ ++ +....+ ..++++|. +.+ .++...
T Consensus 333 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~--~~g~~~~~-----~~~-~~~~~~ 404 (448)
T 3meb_A 333 VQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT--AIGMFTFT-----GLT-PEHVDY 404 (448)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH--CCSSEEEC-----CCC-HHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC--CceEEEec-----CCC-HHHHHH
Confidence 4444332 346777888899999999999987 33 333322 34455553 122 244444
Q ss_pred HHHHHhccCceecccCCCCCCCceEEEEEecc
Q 014163 395 LRKKLNRFQVVYPQKLPMSYPWSTKLRVISHL 426 (429)
Q Consensus 395 L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~~ 426 (429)
|. .++|+.+.+. . .|++++.
T Consensus 405 ll---~~~gV~v~~G---~------gRis~a~ 424 (448)
T 3meb_A 405 LK---EKWSIYLVKA---G------GRMSMCG 424 (448)
T ss_dssp HH---HHHCEEECSG---G------GEEEGGG
T ss_pred HH---HhCCEEEeCC---C------cEEEEec
Confidence 43 2789987642 1 2888854
No 181
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.85 E-value=2.9e-20 Score=188.65 Aligned_cols=215 Identities=13% Similarity=0.044 Sum_probs=153.8
Q ss_pred ccccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhC--CCCCCCCCCCceEeCCchHHHHHHHH
Q 014163 58 LNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFN--TPVADDKTAVGVGTVGSSEAIMLAGL 135 (429)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g--~~~~~~~~~~~~~t~g~t~a~~~al~ 135 (429)
++|+.+.+..++|.+.+.+...+..+ ..+....+..++++++.+++.+.++ .+.+.+ ..+++|+|+++|+.+++.
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~~-~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~--~~i~~t~G~t~al~~~~~ 182 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVAN-NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQ--TDLFPTEGGTAAIVYAFH 182 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTC-SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGG--EEEEEEEHHHHHHHHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCc--ceEEEECCHHHHHHHHHH
Confidence 34555666666666554444444332 1123456788999999999977633 332211 238899999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc---CCccccCHHHHHHHhhhCCeEEEEeeCC
Q 014163 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE---EGYYVMNPVKAVELVDENTICVAAILGS 212 (429)
Q Consensus 136 a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~---~~~~~~d~~~l~~~i~~~~~~v~~~~~~ 212 (429)
++..+.. -..++.|+++.++|.++...++..|++++.++++ ++++.+|+++|++++++++++|++++|+
T Consensus 183 ~l~~~~l--------~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~ 254 (533)
T 3f6t_A 183 SLAENHL--------LKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPT 254 (533)
T ss_dssp HHHHTTS--------SCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSC
T ss_pred Hhhhhhc--------cCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCC
Confidence 7432100 0023689999999999999999999999999985 3448899999999999999999999999
Q ss_pred CccccccChH---HHHHHHH-HhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-CCCCeEE
Q 014163 213 TLTGEFEDVK---LLHDLLT-KKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL-VYAGVGW 287 (429)
Q Consensus 213 ~~tG~~~~l~---~I~~la~-~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~-~p~g~g~ 287 (429)
||||.+.+.+ +|+++|+ +| ++++++|++|+++... . ........+.+.++.|.+|.++ +++++|+
T Consensus 255 NPtG~~~~~~~l~~l~~la~~~~------~~~li~De~y~~~~~~---~-~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~ 324 (533)
T 3f6t_A 255 NPTSKEFDTNALNAIKQAVEKNP------KLMIISDEVYGAFVPN---F-KSIYSVVPYNTMLVYSYSKLFGCTGWRLGV 324 (533)
T ss_dssp TTTCBCCCHHHHHHHHHHHHHCT------TCEEEEECTTGGGSTT---C-CCHHHHSGGGEEEEEESHHHHTCGGGCEEE
T ss_pred CCCccccCHHHHHHHHHHHHhCC------CCEEEEcCCccccccC---c-cCHhhcCCCCEEEEecCcccCCCcccceEE
Confidence 9999996665 8888888 68 9999999999874321 1 0100011245678888999774 6778999
Q ss_pred EEEeCC
Q 014163 288 VVWRTK 293 (429)
Q Consensus 288 l~~~~~ 293 (429)
++.++.
T Consensus 325 l~~~~~ 330 (533)
T 3f6t_A 325 IALNEK 330 (533)
T ss_dssp EEEESS
T ss_pred EEECcH
Confidence 988764
No 182
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.84 E-value=1.5e-19 Score=175.31 Aligned_cols=309 Identities=14% Similarity=0.068 Sum_probs=186.2
Q ss_pred CCCccccccccC---C-ChHHHHHHHHHHcCcCC---CCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCch
Q 014163 55 NPRLNLASFVTT---W-MEPECDKLVMASINKNY---VDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSS 127 (429)
Q Consensus 55 ~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t 127 (429)
...+++..+.+. . ++|.+.+++.+.+.... ..| ..+.. .++++++++++|++. .+.+|+|++
T Consensus 28 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~----~~l~~~la~~~g~~~------~v~~~~g~t 96 (375)
T 2eh6_A 28 KEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQ----EELAHKLVKHFWTEG------KVFFANSGT 96 (375)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHH----HHHHHHHHHTSSSCE------EEEEESSHH
T ss_pred CEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCccc-CCHHH----HHHHHHHHhhcCCCC------eEEEeCchH
Confidence 344455555431 2 56778888777764321 112 22233 355677899999831 389999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH-HHHhcCcee---EEEeccCCccc----cCHHHHHHHh
Q 014163 128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-FARYFEVEL---KEVKLEEGYYV----MNPVKAVELV 199 (429)
Q Consensus 128 ~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~-~~~~~G~~v---~~v~~~~~~~~----~d~~~l~~~i 199 (429)
+|+.+++.+++.-. . ...+| +++|++++++|+.+.. +....|..+ ...|.+.+ .. +|+++|++++
T Consensus 97 ~a~~~~~~~~~~~~-~-~~~~g----~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~~l 169 (375)
T 2eh6_A 97 ESVEAAIKLARKYW-R-DKGKN----KWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPG-FSYAKLNDIDSVYKLL 169 (375)
T ss_dssp HHHHHHHHHHHHHH-H-HTTCC----CCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSS-EEEECTTCHHHHHTTC
T ss_pred HHHHHHHHHHHHHh-c-cCCCC----CCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCC-ceeCCCchHHHHHHHh
Confidence 99999988643211 0 00011 2578888887554333 333222211 00111111 11 5899999999
Q ss_pred hhCCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEEc
Q 014163 200 DENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVS 274 (429)
Q Consensus 200 ~~~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~s 274 (429)
++++++|++++++|+||.+.+ +++|.++|++| |+++|+|++|+++.. ........ ++ ...|++++|
T Consensus 170 ~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~--~~~~~~~~~~~-~~~d~~s~S 240 (375)
T 2eh6_A 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK------DVLLIIDEVQTGIGR--TGEFYAYQHFN-LKPDVIALA 240 (375)
T ss_dssp CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGT-CCCSEEEEC
T ss_pred cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh------CCEEEEeccccCCCC--CCcchhhhhcC-CCCCEEEEc
Confidence 988999999999999999987 99999999999 999999999986321 11111111 11 137888776
Q ss_pred CcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Q 014163 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARAL 354 (429)
Q Consensus 275 ~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l 354 (429)
|++++|.++|+++++++ +.+.+.. .... ..+ ++. .....+..++++.+ ++..++..++++++
T Consensus 241 --K~~~~g~~~G~~~~~~~--~~~~~~~--~~~~---~~~---~~~-~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l 302 (375)
T 2eh6_A 241 --KGLGGGVPIGAILAREE--VAQSFTP--GSHG---STF---GGN-PLACRAGTVVVDEV-----EKLLPHVREVGNYF 302 (375)
T ss_dssp --GGGGTTSCCEEEEEEHH--HHTTCCT--TSCC---CSS---TTC-HHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred --ccccCCCCeEEEEEcHH--HHhhhcC--CCCC---CCC---CCC-HHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 76667899999998752 2122111 0000 011 121 12222223333332 26778888999999
Q ss_pred HHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 355 REGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 355 ~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.+.|++++. ..+ ++ ..+++.+.+.. +..++.+.|. ++|+.+... +...+|++++
T Consensus 303 ~~~L~~~~~-~~~-~~-~g~~~~~~~~~----~~~~~~~~l~----~~gi~~~~~------~~~~iRi~~~ 356 (375)
T 2eh6_A 303 KEKLKELGK-GKV-KG-RGLMLGLELER----ECKDYVLKAL----EKGLLINCT------AGKVLRFLPP 356 (375)
T ss_dssp HHHHHHTTS-SEE-EE-ETTEEEEECSS----CCHHHHHHHH----HTTEECEEE------TTTEEEECCC
T ss_pred HHHHHHHhc-CCc-eE-EEEEEEEEEcC----cHHHHHHHHH----HCCCEEecC------CCCEEEEECC
Confidence 999998874 222 22 45667777642 3456777777 899987642 2456999854
No 183
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.84 E-value=1.2e-19 Score=173.06 Aligned_cols=246 Identities=19% Similarity=0.086 Sum_probs=163.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHH----Hhc
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFA----RYF 174 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~----~~~ 174 (429)
++++.+++++|.+. .+++++|++|+.+++.++.. .+++|+++.++|.++...+ +..
T Consensus 2 ~l~~~la~~~g~~~-------~i~~~sG~~a~~~~~~~~~~-------------~g~~v~~~~~~~~~~~~~~~~~~~~~ 61 (331)
T 1pff_A 2 ALEGKIAKLEHAEA-------CAATASGMGAIAASVWTFLK-------------AGDHLISDDCLYGCTHALFEHQLRKF 61 (331)
T ss_dssp HHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHCC-------------TTCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred hHHHHHHHHhCCCe-------EEEeCChHHHHHHHHHHhcC-------------CCCEEEEcCCCcchHHHHHHHHHHhc
Confidence 35566889999863 55666679999998887643 1368999999999876654 457
Q ss_pred CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHH-hhhccCCCccEEeeccccccccc
Q 014163 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTK-KNEETGWDTPIHVDAASGGFIAP 253 (429)
Q Consensus 175 G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~-~~~~~~~~~~l~vD~a~~~~~~~ 253 (429)
|++++.++. .|+++|++++++++++|++++++|++|.+.|+++|.++|++ + |+++|+|++|+.+...
T Consensus 62 g~~~~~~~~------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~------~~~li~D~a~~~~~~~ 129 (331)
T 1pff_A 62 GVEVDFIDM------AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQK------DILVIVDNTFASPILT 129 (331)
T ss_dssp TCEEEEECT------TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSS------SCEEEEECTTTHHHHC
T ss_pred CCEEEEeCC------CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhc------CCEEEEECCCcccccC
Confidence 999888875 47889999999899999999999999999999999999999 9 9999999999865431
Q ss_pred ccCCCCccccCCCCeeEEEEcCcccCCCCCC--eEEEEEeCCCCcccccccccCC-CCCCCCCceeccCCchhHHHHHHH
Q 014163 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINY-LGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g--~g~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
. ..+ .++|+++.|.||++++|.+ +|+++.++++.. +.+...... .+ ++.+ ...+++
T Consensus 130 --~---~~~---~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~-~~l~~~~~~~~~---------~~~~---~~~~~~ 188 (331)
T 1pff_A 130 --N---PLD---LGVDIVVHSATKYINGHTDVVAGLVCSRADIIA-KVKSQGIKDITG---------AIIS---PHDAWL 188 (331)
T ss_dssp --C---GGG---GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHH-HHHHTCCCCCCC---------CCCC---HHHHHH
T ss_pred --C---hhh---cCCcEEEEECccccCCCCCceEEEEEeCcHHHH-HHHHHHHHhhcC---------CCCC---HHHHHH
Confidence 1 111 2589999999998887765 788887542222 221111111 11 1221 223333
Q ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------eEEeeCC--CCceEEEEEecCCCCCCHHHHHHH
Q 014163 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGR--------------FEILSKD--VGVPLVAFSLKDSSAHTVFEISEG 394 (429)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~--------------~~~~~~~--~~~~~v~f~~~~~~~~~~~~~~~~ 394 (429)
++..+ +.+....++..++.+.+.+.|++.+. +++..+. ...++++|.+. +..++.+.
T Consensus 189 ~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 261 (331)
T 1pff_A 189 ITRGT--LTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-----GLEKAKKV 261 (331)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-----SHHHHHHH
T ss_pred HHcCc--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-----CHHHHHHH
Confidence 33222 12334444555566666666654432 2222111 13568888874 34556666
Q ss_pred HHHHHhccCceecc
Q 014163 395 LRKKLNRFQVVYPQ 408 (429)
Q Consensus 395 L~~~l~~~G~~~~~ 408 (429)
|. +.|+.++.
T Consensus 262 l~----~~gI~~~~ 271 (331)
T 1pff_A 262 LD----NCHVVSLA 271 (331)
T ss_dssp HH----TCSSSEEC
T ss_pred HH----hCCCceec
Confidence 66 89986643
No 184
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.84 E-value=5.5e-20 Score=183.05 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH----H
Q 014163 96 LQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF----A 171 (429)
Q Consensus 96 le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~----~ 171 (429)
..+++++++++++|.+. .+++++|++|+..++. +.. .+++|+++.+.|.++... +
T Consensus 134 ~~~~l~~~la~~~g~~~-------~i~~~sGt~al~~~l~-~~~-------------~Gd~Vi~~~~~y~~~~~~~~~~~ 192 (464)
T 1ibj_A 134 TRDALESLLAKLDKADR-------AFCFTSGMAALSAVTH-LIK-------------NGEEIVAGDDVYGGSDRLLSQVV 192 (464)
T ss_dssp HHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCe-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEECCCchhHHHHHHHHH
Confidence 56788899999999753 7788888998876654 221 236899999999987653 5
Q ss_pred HhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccc
Q 014163 172 RYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFI 251 (429)
Q Consensus 172 ~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~ 251 (429)
+..|++++.+|.+ |+++|++++++++++|++++++||+|.+.|+++|+++|++| |+++|+|++|+.+.
T Consensus 193 ~~~G~~v~~v~~~------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~------gi~livDea~~~g~ 260 (464)
T 1ibj_A 193 PRSGVVVKRVNTT------KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQ------GALVLVDNSIMSPV 260 (464)
T ss_dssp GGGTCEEEEECTT------SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTT------TCEEEEECTTTCTT
T ss_pred HHcCCEEEEeCCC------CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHc------CCEEEEECCCcccc
Confidence 6789999888763 79999999999999999999999999999999999999999 99999999997532
Q ss_pred ccccCCCCccccCCCCeeEEEEcCcccCCCCCCe--EEEEEeC
Q 014163 252 APFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGV--GWVVWRT 292 (429)
Q Consensus 252 ~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~--g~l~~~~ 292 (429)
. .. ..+ .++|+++.+.||++++|.|+ |++++++
T Consensus 261 ~---~~--~~~---~~~div~~S~sK~~~g~~Gl~~G~l~~~~ 295 (464)
T 1ibj_A 261 L---SR--PLE---LGADIVMHSATKFIAGHSDVMAGVLAVKG 295 (464)
T ss_dssp T---CC--GGG---TTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred c---CC--hhh---cCCEEEEECCcccccCCCCCcEEEEEECh
Confidence 1 11 112 25899999999998887665 9988764
No 185
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.84 E-value=7.4e-20 Score=178.87 Aligned_cols=249 Identities=12% Similarity=0.067 Sum_probs=171.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceE---eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CCchHHHH-----
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEK----- 169 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~---t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~----- 169 (429)
++.+.+++++|.+. ..+ +++|++|+..++.++.+ .+++|+++. +.|..+..
T Consensus 63 ~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~-------------~GD~Vl~~~~~~y~~~~~~~~~~ 122 (409)
T 3jzl_A 63 TLERVYATVFKTEA-------ALVRPQIISGTHAISTVLFGILR-------------PDDELLYITGQPYDTLEEIVGIR 122 (409)
T ss_dssp HHHHHHHHHHTCSE-------EEEETTSCSHHHHHHHHHHHHCC-------------TTCEEEECSSSCCTTHHHHHTSS
T ss_pred HHHHHHHHHhCCCc-------EEEECCCccHHHHHHHHHHHhcC-------------CCCEEEEeCCCCcHhHHHHHhcc
Confidence 44456899999864 445 88999999988887754 236899887 88887664
Q ss_pred -----HHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEee----CCCccccccChHHHHHHHHH--hhhccCCC
Q 014163 170 -----FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETGWD 238 (429)
Q Consensus 170 -----~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~----~~~~tG~~~~l~~I~~la~~--~~~~~~~~ 238 (429)
.++..|++++.++++++ +.+|+++|+++++++|++|++++ ++|++|.+.|+++|+++|++ + +
T Consensus 123 g~~~~~l~~~G~~~~~v~~~~~-g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~------~ 195 (409)
T 3jzl_A 123 KQGQGSLKDFHIGYSSVPLLEN-GDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINP------E 195 (409)
T ss_dssp SSSSSCTGGGTCEEEECCCCTT-SCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT------T
T ss_pred cchhhHHHHcCCEEEEeCCCCC-CCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCC------C
Confidence 34667999999998775 88999999999999999999999 99999999999999999999 9 9
Q ss_pred ccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCC--CeEEEEEeCCCCcccccccc--cCCCCCCCCCc
Q 014163 239 TPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYA--GVGWVVWRTKDDLPDELVFH--INYLGSDQPTF 314 (429)
Q Consensus 239 ~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~--g~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 314 (429)
+++|+|++|+.+.. ..+ ... .++|.++.|.||+++++. ..|+++.+ ++. .+.+... ...++...
T Consensus 196 ~~livD~a~~~~~~---~~~-p~~---~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~l-i~~l~~~~~~~~~g~~~--- 263 (409)
T 3jzl_A 196 VIVFVDNCYGEFVE---YQE-PPE---VGADIIAGSLIKNPGGGLAKTGGYIAGK-EAL-VDLCGYRLTTPGIGREA--- 263 (409)
T ss_dssp CEEEEECTTCTTTS---SCC-SGG---GTCSEEEEETTSGGGTTTCSSCEEEEEC-HHH-HHHHHHHHSCTTTGGGC---
T ss_pred CEEEEeCCcccccc---cCC-ccc---cCCeEEEECccccCCccCCceEEEEEeC-HHH-HHHHHHHhccccccccc---
Confidence 99999999986431 111 111 258999999999987653 23777664 322 2322221 11111100
Q ss_pred eeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce-----EEEEEecCCCCCCHH
Q 014163 315 TLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP-----LVAFSLKDSSAHTVF 389 (429)
Q Consensus 315 ~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-----~v~f~~~~~~~~~~~ 389 (429)
+... .. .+++++.+ .....++++..+++.++.+.|+++| +++. +. ... +++|.+.+ .....
T Consensus 264 ---g~~~-~~---~~~~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g-~~v~-p~-~~~~~~~~i~~i~l~~--~~~~~ 329 (409)
T 3jzl_A 264 ---GASL-YS---LLEMYQGF--FLAPHVTAQAIKGARFTAAMLAEFG-VEAD-PV-WDAPRTDLIQSVSFHN--KEKMV 329 (409)
T ss_dssp ---CCCT-TC---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CEEE-SC-TTSCCSSSCCEEECSC--HHHHH
T ss_pred ---cccH-HH---HHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhCC-Cccc-CC-CCCCCccEEEEEEeCC--HHHHH
Confidence 1111 11 12233222 3356778888999999999999998 7773 32 222 77787742 23444
Q ss_pred HHHHHHHHHHhccCc
Q 014163 390 EISEGLRKKLNRFQV 404 (429)
Q Consensus 390 ~~~~~L~~~l~~~G~ 404 (429)
.+.+.|+ ....
T Consensus 330 ~~~~~L~----~~~~ 340 (409)
T 3jzl_A 330 AFAQAIQ----AASP 340 (409)
T ss_dssp HHHHHHH----HTSS
T ss_pred HHHHHHH----hcCc
Confidence 5555555 6653
No 186
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.84 E-value=4e-19 Score=174.12 Aligned_cols=302 Identities=12% Similarity=-0.010 Sum_probs=182.5
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+.........++ .+...++++++++++|.+. +++|+||++|+..++.+++..+..+
T Consensus 56 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-------v~~~~gg~~a~~~al~~~~~~~~~~--- 123 (406)
T 4adb_A 56 AHPELREALNEQASKFWHTGNGYT--NEPVLRLAKKLIDATFADR-------VFFCNSGAEANEAALKLARKFAHDR--- 123 (406)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTSC--CHHHHHHHHHHHHHSSCSE-------EEEESSHHHHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHhcccccCCcC--CHHHHHHHHHHHhhCCCCe-------EEEeCcHHHHHHHHHHHHHHHHHhc---
Confidence 367788888887765332221221 2335577788999998753 8999999999999999876532111
Q ss_pred cCCCCCCcEEEEcCCCchHH-HHHHHhcCc------------eeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 148 QGKPYDKPNIVTGANVQVCW-EKFARYFEV------------ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~-~~~~~~~G~------------~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
|.+ ++++|++.++.|+.+ ..+....|. ++..+|. .|+++|++++++++++|+++ |+|+
T Consensus 124 -~~~-g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~-p~np 194 (406)
T 4adb_A 124 -YGS-HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY------NDINSASALIDDSTCAVIVE-PIQG 194 (406)
T ss_dssp -TCT-TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT------TCHHHHHTTCSTTEEEEEEC-SEET
T ss_pred -CCC-CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC------CcHHHHHHHhcCCeEEEEEe-CCcC
Confidence 100 235677777665544 333333331 2222221 48999999999889988888 8999
Q ss_pred cccc-----cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEE
Q 014163 215 TGEF-----EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVV 289 (429)
Q Consensus 215 tG~~-----~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~ 289 (429)
+|.+ +++++|.++|++| |+++|+|++|+++.. .......+......|.+++ +|+++++.++|+++
T Consensus 195 ~g~~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~d~~t~--sK~~~~G~r~G~~~ 264 (406)
T 4adb_A 195 EGGVVPASNAFLQGLRELCNRH------NALLIFDEVQTGVGR--TGELYAYMHYGVTPDLLTT--AKALGGGFPVGALL 264 (406)
T ss_dssp TTTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEE
T ss_pred CCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--cchhHHHHhcCCCCCEEEe--chhhcCCCCeEEEE
Confidence 9854 5799999999999 999999999985321 1111111111123577765 88877777899987
Q ss_pred EeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEee
Q 014163 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGR-FEILS 368 (429)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~ 368 (429)
.+++ +.+.+.. .... .+ .+.+.....+..++++.+.. ++..++.+++++++.+.|++++. +..+.
T Consensus 265 ~~~~--~~~~~~~---~~~~--~~----~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 330 (406)
T 4adb_A 265 ATEE--CARVMTV---GTHG--TT----YGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFS 330 (406)
T ss_dssp ECHH--HHHTCCT---TSSC--CS----STTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred EcHH--HHhhhcc---CCcC--CC----CCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 7542 2111111 0000 01 12222333344444544432 56777788888888888887531 11111
Q ss_pred C-CCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 369 K-DVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 369 ~-~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
. +....++.+.+......+..++.+.|. ++|+.+... +...+|++.
T Consensus 331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~----~~gi~v~~~------~~~~iRi~~ 377 (406)
T 4adb_A 331 EVRGLGLLIGCVLNADYAGQAKQISQEAA----KAGVMVLIA------GGNVVRFAP 377 (406)
T ss_dssp EEEEETTEEEEEECTTTTTCHHHHHHHHH----HTTEECEES------STTEEEECC
T ss_pred EEEEEEEEEEEEEeCCcHHHHHHHHHHHH----HCCcEEeec------CCCeEEEEC
Confidence 1 113456777775421235677777777 889987642 245699954
No 187
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.83 E-value=3.7e-20 Score=180.80 Aligned_cols=320 Identities=10% Similarity=-0.051 Sum_probs=195.7
Q ss_pred CCcccccccc---C---CChHHHHHHHHHHcCc-CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceE--eCCc
Q 014163 56 PRLNLASFVT---T---WMEPECDKLVMASINK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVG--TVGS 126 (429)
Q Consensus 56 ~~~~~~~~~~---~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~--t~g~ 126 (429)
..++|+.+.+ . ++++.+.+++.+.+.. ....|....+..++++++.+++... +.+. ..+.+ |+|+
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~-----~~v~~~~~~g~ 100 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKS-----ETTATLATVGG 100 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCG-----GGEEEEEEEHH
T ss_pred cccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCc-----ccEEEEecCCc
Confidence 3456666653 1 3457788887776543 2233444556778887766665321 2232 23667 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhC---
Q 014163 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDEN--- 202 (429)
Q Consensus 127 t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~--- 202 (429)
++|+.+++.+++.. . .+++|+++.++|..+...++..|++++.+|.++ +++.+|+++|++++++.
T Consensus 101 ~~a~~~~~~~~~~~-~----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 169 (394)
T 2ay1_A 101 TGALRQALELARMA-N----------PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKG 169 (394)
T ss_dssp HHHHHHHHHHHHHH-C----------TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTT
T ss_pred hhHHHHHHHHHHhc-C----------CCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCC
Confidence 99999998877541 0 125799999999999999999999999999852 34789999999999863
Q ss_pred CeEEEEeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cC-CCCeeEEEEcCcc
Q 014163 203 TICVAAILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FR-LPLVKSINVSGHK 277 (429)
Q Consensus 203 ~~~v~~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~-~~~~d~~~~s~hK 277 (429)
++++++++++||||.+.+ +++|+++|+++ ++++|+|++|+++...-..+..... +. ...-+.+..+.+|
T Consensus 170 ~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~------~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 243 (394)
T 2ay1_A 170 DMVLLHGCCHNPTGANLTLDQWAEIASILEKT------GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSK 243 (394)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTT
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccC
Confidence 577778999999999864 66889999999 9999999999864320000000011 11 1112355668899
Q ss_pred cCC-CCCCeEEEEE--eCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHc-----CHHHHHHHHHHHHH
Q 014163 278 YGL-VYAGVGWVVW--RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRL-----GFEGYKNIMENCMG 349 (429)
Q Consensus 278 ~~~-~p~g~g~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l-----~~~g~~~~~~~~~~ 349 (429)
+++ ++.++|++++ .+++............... .+ ++.+.....++..+++.. -.+.+++..++..+
T Consensus 244 ~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~---~~---~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~ 317 (394)
T 2ay1_A 244 NFGIYRERTGCLLALCADAATRELAQGAMAFLNRQ---TY---SFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLR 317 (394)
T ss_dssp TTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT---TT---SSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhh---hc---CCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 876 6677899987 2322110000000000000 00 111112222233333221 02456778888889
Q ss_pred HHHHHHHHHHhCC---CeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 350 NARALREGLEKTG---RFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 350 ~~~~l~~~L~~~~---~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+++++.+.|++++ ++++..+ ..+.+.|. ..+...+.+.|. ++|+.+... +|++++
T Consensus 318 ~~~~l~~~L~~~~~~~~~~~~~~--~~g~~~~~-----~~~~~~~~~~l~----~~gi~v~~~----------~Ris~~ 375 (394)
T 2ay1_A 318 LREQLAGELRDLSGSDRFGFVAE--HRGMFSRL-----GATPEQVKRIKE----EFGIYMVGD----------SRINIA 375 (394)
T ss_dssp HHHHHHHHHHHHHTSSTTTHHHH--CCSSEEEC-----CCCHHHHHHHHH----HHCEECCTT----------CEEEGG
T ss_pred HHHHHHHHHHhcCCCCCeeEEcC--CceEEEee-----CCCHHHHHHHHH----hCCEEecCC----------CeEEee
Confidence 9999999998875 3555433 23333332 112234444444 899987531 599886
No 188
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.83 E-value=3.2e-19 Score=174.96 Aligned_cols=245 Identities=18% Similarity=0.136 Sum_probs=169.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceE---eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CCchHHH------
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE------ 168 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~---t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~------ 168 (429)
++.+.+++++|.+. .++ +++|++|+..++.++.+ .+++|++++ +.|..+.
T Consensus 77 ~Le~~lA~l~g~e~-------alv~p~~~sGt~Ai~~al~all~-------------pGD~Vl~~~~~~y~~~~~~~g~~ 136 (427)
T 3i16_A 77 SLDAVYARVFNTES-------ALVRPHFVNGTHALGAALFGNLR-------------PGNTMLSVCGEPYDTLHDVIGIT 136 (427)
T ss_dssp HHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHHCC-------------TTCEEEESSSSCCGGGHHHHTCS
T ss_pred HHHHHHHHHhCCcc-------eEEeCCCccHHHHHHHHHHHHhC-------------CCCEEEEeCCCccHHHHHHHhcc
Confidence 44456999999974 455 78999999988887754 236899988 7887655
Q ss_pred -----HHHHhcCceeEEEeccCCccccCHHHHHHHhh--hCCeEEEEee----CCCccccccChHHHHHHHHH--hhhcc
Q 014163 169 -----KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEET 235 (429)
Q Consensus 169 -----~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--~~~~~v~~~~----~~~~tG~~~~l~~I~~la~~--~~~~~ 235 (429)
..++..|++++.+|++++ +.+|+++|+++++ ++|++|++++ ++|++|.+.|+++|+++|++ +
T Consensus 137 ~~~~~~~l~~~G~~~~~v~~~~~-g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~---- 211 (427)
T 3i16_A 137 ENSNMGSLKEFGINYKQVDLKED-GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRK---- 211 (427)
T ss_dssp CCCSSCCTGGGTCEEEECCCCTT-SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCT----
T ss_pred ccchHHHHHHcCCEEEEecCccC-CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCC----
Confidence 345667999999998765 7899999999999 7899999999 99999999999999999999 9
Q ss_pred CCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCC--CCeEEEEEeCCCCcccccccc--cCCCCCCC
Q 014163 236 GWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDLPDELVFH--INYLGSDQ 311 (429)
Q Consensus 236 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p--~g~g~l~~~~~~~~~~~~~~~--~~~~~~~~ 311 (429)
|++++||++|+.+.. ... ... .++|+++.+.||+++++ ...|+++.++ + +.+.+... ...++..
T Consensus 212 --g~~livD~a~~~~~~---~~~-p~~---~gaDiv~~S~sK~lgg~g~~~gG~i~~~~-~-li~~l~~~~~~~~~g~~- 279 (427)
T 3i16_A 212 --DIICFVDNCYGEFMD---TKE-PTD---VGADLIAGSLIKNIGGGIAPTGGYLAGTK-D-CIEKTSYRLTVPGIGGE- 279 (427)
T ss_dssp --TSEEEEECTTTTTSS---SSC-GGG---GTCSEEEEETTSGGGTTTCCSCEEEEECH-H-HHHHHHHHHSCTTTGGG-
T ss_pred --CCEEEEECCCccccc---cCC-ccc---cCCeEEEecCcccCCCCCCceEEEEEECH-H-HHHHHHHhcccCccCcc-
Confidence 999999999986431 111 111 25899999999998663 2348877643 2 22222221 1111100
Q ss_pred CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce-----EEEEEecCCCCC
Q 014163 312 PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP-----LVAFSLKDSSAH 386 (429)
Q Consensus 312 ~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-----~v~f~~~~~~~~ 386 (429)
.+.. .. ..|.+++.+ .....++++..+++.++.+.|+++| +++. +. ..+ +++|.+.+ ..
T Consensus 280 ------~~~~-~~--~a~~~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g-~~V~-p~-~~~~~~~~i~~i~l~~--~~ 343 (427)
T 3i16_A 280 ------CGST-FG--VVRSMYQGL--FLAPHISMEALKGAILCSRIMELAG-FEVM-PK-YDEKRSDIIQSIKFND--KD 343 (427)
T ss_dssp ------CCCC-TT--CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CEEE-SC-TTSCCSSSCEEEECSS--HH
T ss_pred ------CCcc-HH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCC-Ceec-CC-CCCCCccEEEEEEECC--HH
Confidence 0110 11 123333322 3456788899999999999999998 6773 32 233 78888743 22
Q ss_pred CHHHHHHHHH
Q 014163 387 TVFEISEGLR 396 (429)
Q Consensus 387 ~~~~~~~~L~ 396 (429)
....+.+.|+
T Consensus 344 ~~~~f~~~l~ 353 (427)
T 3i16_A 344 KLIEFCKGIQ 353 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3344555554
No 189
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.83 E-value=1.6e-19 Score=176.59 Aligned_cols=315 Identities=13% Similarity=0.037 Sum_probs=196.9
Q ss_pred CCCcccccccc---C---CChHHHHHHHHHHc-Cc-CCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCc
Q 014163 55 NPRLNLASFVT---T---WMEPECDKLVMASI-NK-NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126 (429)
Q Consensus 55 ~~~~~~~~~~~---~---~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~ 126 (429)
...++|+.|.+ . ++.+.+.++.. .+ +. ....|....|..++++++.+|+.+..+.+.+. +...+++|.|+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-~~i~i~~t~G~ 106 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIED-KKICTIQCIGG 106 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTT-TCEEEEEEEHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccc-cceEEEEcCch
Confidence 34477887752 1 23455777765 43 22 33457777899999999999886544433211 11125899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEec-cCCccccCHHHHHHHhhh--CC
Q 014163 127 SEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL-EEGYYVMNPVKAVELVDE--NT 203 (429)
Q Consensus 127 t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~-~~~~~~~d~~~l~~~i~~--~~ 203 (429)
++|+.+++.++.+- .. ++|++++++|..+..+++..|++++.+|+ +++++.+|+++|++++++ ++
T Consensus 107 ~~al~~~~~~l~~~-----------~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 174 (405)
T 3k7y_A 107 TGAIFVLLEFLKML-----------NV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNG 174 (405)
T ss_dssp HHHHHHHHHHHHTT-----------TC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhc-----------CC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCC
Confidence 99999988877541 02 68999999999999999999999999998 454589999999999985 45
Q ss_pred eEEEEeeC-CCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCC---cc-cc-C-CCCeeEEEE
Q 014163 204 ICVAAILG-STLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL---EW-DF-R-LPLVKSINV 273 (429)
Q Consensus 204 ~~v~~~~~-~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~---~~-~~-~-~~~~d~~~~ 273 (429)
++++++.+ +||||.+ +.+++|+++|++| ++++++|++|..+.. ...+. .. .+ . ..++-.+..
T Consensus 175 ~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~------~~~vi~De~Y~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~S 246 (405)
T 3k7y_A 175 SSVILQISCYNPCSVNIEEKYFDEIIEIVLHK------KHVIIFDIAYQGFGH--TNLEEDVLLIRKFEEKNIAFSVCQS 246 (405)
T ss_dssp CEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH------CCEEEEEESCTTTSS--SSTTGGGHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC------CeEEEEecCcccccC--CCcccchHHHHHHHhcCCcEEEEee
Confidence 77888766 8999998 4577888999999 999999999987431 10000 00 11 1 123444443
Q ss_pred cCcccCCCCCCeEEEEE--eCCCCccccccc----ccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC--------HHH
Q 014163 274 SGHKYGLVYAGVGWVVW--RTKDDLPDELVF----HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEG 339 (429)
Q Consensus 274 s~hK~~~~p~g~g~l~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~--------~~g 339 (429)
.++-+.++++++||+++ .+++.. ..+.. ....... .. ..+++.++...+. .+.
T Consensus 247 ~SK~~~l~GlRiG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~---------~~---~~~~q~~~~~~l~~~~l~~~~~~~ 313 (405)
T 3k7y_A 247 FSKNMSLYGERAGALHIVCKNQEEK-KIVFNNLCFIVRKFYS---------SP---VIHTNRILCQLLNNQNLKLNWIKE 313 (405)
T ss_dssp CTTTSCCTTTTEEEEEEECSSHHHH-HHHHHHHHHHHHTTTS---------SC---CHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCccCCCccccceEEEEEeCCHHHH-HHHHHHHHHHHhcccC---------CC---cHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34445568999999865 222211 11100 0001100 11 1222332222221 123
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hCCC---eEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCC
Q 014163 340 YKNIMENCMGNARALREGLE----KTGR---FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPM 412 (429)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~L~----~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~ 412 (429)
++++.++..++++++.+.|+ +++. +++. ++ +.++++|.-.+ . ++.++|. ++|+.+.+
T Consensus 314 l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~-~p-~gg~f~~~~l~-----~-~~~~~L~----~~gV~v~p---- 377 (405)
T 3k7y_A 314 LSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVY-KK-QRGLFSFVPLL-----A-KIAEHLK----THHIYIIN---- 377 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGG-SS-CCSSEEECGGG-----G-GGTTTTT----TTTEECCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccc-cC-CceEEEecCCC-----H-HHHHHHH----HCCEeecC----
Confidence 45566778889999999999 7752 3433 23 56666663211 1 3334443 88988653
Q ss_pred CCCCceEEEEEecc
Q 014163 413 SYPWSTKLRVISHL 426 (429)
Q Consensus 413 ~~~~~~~lRi~~~~ 426 (429)
+. ||+++.
T Consensus 378 ---~~---Ris~a~ 385 (405)
T 3k7y_A 378 ---NG---RINVSG 385 (405)
T ss_dssp ---TS---EEEGGG
T ss_pred ---CC---eEEEec
Confidence 11 999863
No 190
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.83 E-value=5.3e-19 Score=173.20 Aligned_cols=249 Identities=16% Similarity=0.066 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH-
Q 014163 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK- 169 (429)
Q Consensus 91 ~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~- 169 (429)
|...++| +.+++++|.+. .+++++|++|+..++. +.. .+++|+++.+.|.+...
T Consensus 67 p~~~~l~----~~la~~~g~~~-------~i~~~sG~~ai~~~~~-l~~-------------~gd~Vl~~~~~y~~~~~~ 121 (403)
T 3cog_A 67 PTRNCLE----KAVAALDGAKY-------CLAFASGLAATVTITH-LLK-------------AGDQIICMDDVYGGTNRY 121 (403)
T ss_dssp HHHHHHH----HHHHHHHTCSE-------EEEESCHHHHHHHHHT-TSC-------------TTCEEEEESSCCHHHHHH
T ss_pred chHHHHH----HHHHHHhCCCc-------EEEECCHHHHHHHHHH-HhC-------------CCCEEEEeCCCcchHHHH
Confidence 4445554 55788888762 5556666799988877 432 13689999999987433
Q ss_pred ---HHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCC-ccEEeec
Q 014163 170 ---FARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD-TPIHVDA 245 (429)
Q Consensus 170 ---~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~-~~l~vD~ 245 (429)
.++..|++++.++.+ |+++|+++++++|++|++++++||+|.+.|+++|+++|+++ | +++++|+
T Consensus 122 ~~~~~~~~G~~v~~v~~~------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~------g~~~livD~ 189 (403)
T 3cog_A 122 FRQVASEFGLKISFVDCS------KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKH------GDIILVVDN 189 (403)
T ss_dssp HHHTGGGGTCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSS------SCCEEEEEC
T ss_pred HHHHHHHcCCEEEEECCC------CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHc------CCCEEEEEC
Confidence 456789999988864 78999999999999999999999999999999999999999 9 9999999
Q ss_pred ccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCC--eEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchh
Q 014163 246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAG--VGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSS 323 (429)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~ 323 (429)
+|+.+.. .. ..+ .++|++..|.||++++|.+ +|+++.++++.. +.+.......+ ++.
T Consensus 190 ~~~~~~~---~~--~~~---~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~-~~l~~~~~~~g---------~~~--- 248 (403)
T 3cog_A 190 TFMSPYF---QR--PLA---LGADISMYSATKYMNGHSDVVMGLVSVNCESLH-NRLRFLQNSLG---------AVP--- 248 (403)
T ss_dssp TTTCTTT---CC--TTT---TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHH-HHHHHHHHHHC---------CCC---
T ss_pred CCccccc---CC--ccc---cCCeEEEEcChhhccCCCCCeEEEEEECcHHHH-HHHHHHHHhcC---------CCC---
Confidence 9987532 11 111 2589999999999987765 588887543322 22111111011 111
Q ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe--------------eCC--CCceEEEEEecCCCCCC
Q 014163 324 QIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL--------------SKD--VGVPLVAFSLKDSSAHT 387 (429)
Q Consensus 324 ~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~--------------~~~--~~~~~v~f~~~~~~~~~ 387 (429)
..+.+|+++..+. .+..++++..+++..+.+.|++.+.++-+ .+. ...++++|.+++.
T Consensus 249 ~~~~~~~~~~~l~--~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~---- 322 (403)
T 3cog_A 249 SPIDCYLCNRGLK--TLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT---- 322 (403)
T ss_dssp CHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC----
T ss_pred CHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC----
Confidence 2234555554443 24556666677777777777776543322 110 1267899987532
Q ss_pred HHHHHHHHHHHHhccCceec
Q 014163 388 VFEISEGLRKKLNRFQVVYP 407 (429)
Q Consensus 388 ~~~~~~~L~~~l~~~G~~~~ 407 (429)
..++.+.|. +.|+...
T Consensus 323 ~~~~~~~l~----~~~i~~~ 338 (403)
T 3cog_A 323 LQHAEIFLK----NLKLFTL 338 (403)
T ss_dssp HHHHHHHHH----HCSSSEE
T ss_pred HHHHHHHHH----hCCcceE
Confidence 133444444 6676543
No 191
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.83 E-value=1.1e-18 Score=172.16 Aligned_cols=300 Identities=11% Similarity=-0.046 Sum_probs=186.3
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+......... ...+...++.+++++++|.+ .+.+|+||++|+..++++++.....
T Consensus 74 ~~p~v~~ai~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~g~~-------~v~~~~ggteA~~~al~~~~~~~~~---- 140 (420)
T 2pb2_A 74 CHPALVEALKSQGETLWHTSNV--FTNEPALRLGRKLIDATFAE-------RVLFMNSGTEANETAFKLARHYACV---- 140 (420)
T ss_dssp TCHHHHHHHHHHHTTCCCCCTT--SCCHHHHHHHHHHHHHSSCS-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhcccccCc--cCCHHHHHHHHHHHhhCCCC-------eEEEeCCHHHHHHHHHHHHHHHhhh----
Confidence 4677888888887653221111 12345567778899988853 2899999999999999988753211
Q ss_pred cCCCCCCcEEEEcCCCc-hHHHHHHHhcCce------------eEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 148 QGKPYDKPNIVTGANVQ-VCWEKFARYFEVE------------LKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h-~s~~~~~~~~G~~------------v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
.|.+ ++++|++++++| .....++...|.+ +..+|. .|+++|++++++++++|+++.++++
T Consensus 141 ~~~~-g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~------~d~~~le~~i~~~~~~vi~~p~~~~ 213 (420)
T 2pb2_A 141 RHSP-FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF------NDLHAVKAVMDDHTCAVVVEPIQGE 213 (420)
T ss_dssp HTCT-TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT------TCHHHHHHHCCTTEEEEEECSEETT
T ss_pred ccCC-CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC------CCHHHHHHHhccCceEEEEeCCcCC
Confidence 1110 124777776654 4445555555543 333432 3899999999988999988888777
Q ss_pred ccc----ccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEEcCcccCCCCCCeEEEE
Q 014163 215 TGE----FEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYAGVGWVV 289 (429)
Q Consensus 215 tG~----~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~s~hK~~~~p~g~g~l~ 289 (429)
+|. .+++++|.++|++| |+++|+|++|.++.. .......+ ++. ..|.+++ .|++.++.++|+++
T Consensus 214 gG~~~~~~~~l~~l~~l~~~~------gi~lI~Dev~~g~~~--~g~~~~~~~~~~-~~diit~--sK~l~~G~~iG~~~ 282 (420)
T 2pb2_A 214 GGVQAATPEFLKGLRDLCDEH------QALLVFDEVQCGMGR--TGDLFAYMHYGV-TPDILTS--AKALGGGFPVSAML 282 (420)
T ss_dssp TTSEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEEE
T ss_pred CCeecCCHHHHHHHHHHHHHc------CCEEEEEcCCcCccc--CCcHHHHHhcCC-CCCeEEe--cccccCCCceEEEE
Confidence 775 37899999999999 999999999976321 11111111 122 3677754 58887778899998
Q ss_pred EeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCeE
Q 014163 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GRFE 365 (429)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~~ 365 (429)
++++ +.+.+.. . ....++ +.+.....+..++++.+.. ++..++..++++++.+.|+++ +.+.
T Consensus 283 ~~~~--l~~~l~~------~-~~~~t~--~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 348 (420)
T 2pb2_A 283 TTQE--IASAFHV------G-SHGSTY--GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFS 348 (420)
T ss_dssp ECHH--HHTTCC-----------CCEE--CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred EhHH--HHHhhcC------C-CcCccc--CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 8652 2222111 0 001111 2222344445555665543 356777888888888888765 4333
Q ss_pred EeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 366 ILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 366 ~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.+. + ...++.+.+......+..++.+.|. ++|+.+.+. +...+|+++
T Consensus 349 ~~~-~-~g~~~~v~~~~~~~~~~~~l~~~l~----~~Gi~v~~~------~~~~iRl~~ 395 (420)
T 2pb2_A 349 DIR-G-MGLLIGAELKPKYKGRARDFLYAGA----EAGVMVLNA------GADVMRFAP 395 (420)
T ss_dssp EEE-E-ETTEEEEEECGGGTTCHHHHHHHHH----HTTEECEES------STTEEEECC
T ss_pred EEE-e-cceEEEEEECCCchHHHHHHHHHHH----HCCCEEEeC------CCCEEEEEC
Confidence 222 2 4567777774321124566777776 899987642 135699984
No 192
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.82 E-value=3.7e-19 Score=173.91 Aligned_cols=228 Identities=16% Similarity=0.050 Sum_probs=158.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHH-----HHh
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF-----ARY 173 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~-----~~~ 173 (429)
++.+.++++.|.+. .+++++|++|+.. +.++.. .+++|+++.+.|.+.... +..
T Consensus 71 ~l~~~la~l~g~~~-------~~~~~sG~~Ai~~-~~~l~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~~~ 129 (400)
T 3nmy_A 71 AYERCVAALEGGTR-------AFAFASGMAATST-VMELLD-------------AGSHVVAMDDLYGGTFRLFERVRRRT 129 (400)
T ss_dssp HHHHHHHHHHTCSE-------EEEESSHHHHHHH-HHTTSC-------------TTCEEEEESSCCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhCCCC-------EEEecCHHHHHHH-HHHHcC-------------CCCEEEEeCCCchHHHHHHHHhhHhh
Confidence 44455888888763 6778888999886 333322 236899999999854444 334
Q ss_pred cCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccccc
Q 014163 174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP 253 (429)
Q Consensus 174 ~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~ 253 (429)
.|++++.++.+ |+++|++++++++++|++.+++|++|.+.|+++|+++|++| |+++++|++|+.+..
T Consensus 130 ~g~~~~~v~~~------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~------g~~livDe~~~~~~~- 196 (400)
T 3nmy_A 130 AGLDFSFVDLT------DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKH------GLLTVVDNTFASPML- 196 (400)
T ss_dssp HCCEEEEECTT------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHT------TCEEEEECTTTHHHH-
T ss_pred cCeEEEEECCC------CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHc------CCEEEEECCCccccc-
Confidence 69988888753 78999999999999999999999999999999999999999 999999999985432
Q ss_pred ccCCCCccccCCCCeeEEEEcCcccCCCCC-Ce-E-EEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHH
Q 014163 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GV-G-WVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~-g~-g-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
.. ... .++|.++.|.+|++.+|. .. | +++.+++ .+.+.+....... +.. ...+..|.
T Consensus 197 -~~---~~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~-~~~~~l~~~~~~~----------g~~--~~~~~a~~ 256 (400)
T 3nmy_A 197 -QR---PLS---LGADLVVHSATKYLNGHSDMVGGIAVVGDNA-ELAEQMAFLQNSI----------GGV--QGPFDSFL 256 (400)
T ss_dssp -CC---GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECSCH-HHHHHHHHHHHHH----------CCB--CCHHHHHH
T ss_pred -CC---hhh---cCCcEEEecCccccCCCCCcceeEEEEeCCH-HHHHHHHHHHHhc----------CCC--CCHHHHHH
Confidence 11 111 258999999999988762 34 4 3443333 2222221111111 111 12344555
Q ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC----------------CceEEEEEecC
Q 014163 331 QFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV----------------GVPLVAFSLKD 382 (429)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~~~~v~f~~~~ 382 (429)
+++.+ +.+..++++..+++.++.+.|++.|.+..+..|. ...+++|.+++
T Consensus 257 ~l~~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~ 322 (400)
T 3nmy_A 257 ALRGL--KTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG 322 (400)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred HHHhH--hHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC
Confidence 55543 4467788888999999999999999877554331 24688999864
No 193
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.82 E-value=2.2e-19 Score=185.15 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=162.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCcee
Q 014163 99 RCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVEL 178 (429)
Q Consensus 99 ~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v 178 (429)
++.+.+|+++|.+. ...+++|++.||..++.++.. .++.|++++++|.|+..++++.|+++
T Consensus 199 eaE~~lA~~fGa~~------a~~v~nGts~An~~ai~al~~-------------pGD~VLv~r~~H~S~~~~l~lsGa~p 259 (715)
T 3n75_A 199 EAEQYIARVFNADR------SYMVTNGTSTANKIVGMYSAP-------------AGSTILIDRNCHKSLTHLMMMSDVTP 259 (715)
T ss_dssp HHHHHHHHHHTCSE------EEEESSHHHHHHHHHHHHHCC-------------TTCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHhCCCC------ceEECcHHHHHHHHHHHHhCC-------------CCCEEEECCCccHHHHHHHHHcCCEE
Confidence 44456999999974 245566668999888887754 23799999999999999999999999
Q ss_pred EEEeccCCccc----c-----CHHHHHHHhhhC--Ce---EEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEee
Q 014163 179 KEVKLEEGYYV----M-----NPVKAVELVDEN--TI---CVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVD 244 (429)
Q Consensus 179 ~~v~~~~~~~~----~-----d~~~l~~~i~~~--~~---~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD 244 (429)
++++.+.+++. + |+++|+++++++ ++ +++++++ |++|.+.|+++|+++|+++ + ++||
T Consensus 260 v~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~------~--livD 330 (715)
T 3n75_A 260 IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK------S--IHFD 330 (715)
T ss_dssp EEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS------E--EEEE
T ss_pred EEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC------c--EEEc
Confidence 99987643333 3 899999999864 34 7889999 9999999999999999766 4 7999
Q ss_pred cccccccccccCCCCc-c-ccCC-CCeeEE---EEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceecc
Q 014163 245 AASGGFIAPFLYPDLE-W-DFRL-PLVKSI---NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNF 318 (429)
Q Consensus 245 ~a~~~~~~~~~~~~~~-~-~~~~-~~~d~~---~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (429)
+||+.+.. +.+..+ . .+.. ..+|.+ +.|.||++.++.+.|++++++. .....+.....+... .
T Consensus 331 EAH~~~~~--f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~-i~~~~~~~~~~~~~S--------T 399 (715)
T 3n75_A 331 SAWVPYTN--FSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYMMHTT--------T 399 (715)
T ss_dssp CTTCTTGG--GSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC-CCHHHHHHHHHHTSC--------S
T ss_pred cccccccc--cCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch-hhHHHHHHHHHhhcC--------C
Confidence 99986542 122111 0 1111 124554 8999999998888899988764 211111111222221 3
Q ss_pred CCchhHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 014163 319 SKGSSQIIAQYYQFIRLGF-EGYKNIMENCMGNARALREGLEKTGR 363 (429)
Q Consensus 319 tr~~~~~~~~~~al~~l~~-~g~~~~~~~~~~~~~~l~~~L~~~~~ 363 (429)
+++...+.++.++++.+.. .| ++++++..++++++++.|+++++
T Consensus 400 Spsy~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~ 444 (715)
T 3n75_A 400 SPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRT 444 (715)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555566777778877764 44 66889999999999999998763
No 194
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.82 E-value=3.2e-19 Score=178.19 Aligned_cols=321 Identities=12% Similarity=0.037 Sum_probs=181.7
Q ss_pred HHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcC
Q 014163 70 PECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQG 149 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g 149 (429)
|.+.+++..++......|...++..+++ +++++++|.+. +.+|+|||+|+.+++.++++..... .|
T Consensus 53 ~~v~~a~~~~l~~~~~~y~~~~~~~~l~----~~la~~~~~~~-------v~~t~~gt~A~~~al~~~~~~~~~~---~G 118 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGDEAYSGSRSYYALA----ESVKNIFGYQY-------TIPTHQGRGAEQIYIPVLIKKREQE---KG 118 (467)
T ss_dssp SCCCHHHHHHTTSCCCCSSSCHHHHHHH----HHHHHHHCCSE-------EEEEC--CCSHHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHHHhccCcceeccCchhHHHH----HHHHHHhCcCc-------EEEcCCcHHHHHHHHHHHhcccccc---CC
Confidence 6667777777654433455556666555 45778888743 8999999999999999987531110 12
Q ss_pred CCCCC-cEEEEcCCCch-HHHHHHHhcCceeEEE------ecc---CCccccCHHHHHHHhhh----CCeEEEEeeCCCc
Q 014163 150 KPYDK-PNIVTGANVQV-CWEKFARYFEVELKEV------KLE---EGYYVMNPVKAVELVDE----NTICVAAILGSTL 214 (429)
Q Consensus 150 ~~~~~-~~vi~~~~~h~-s~~~~~~~~G~~v~~v------~~~---~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~ 214 (429)
. .+ ++|+++ ..|+ ++.......|..+... +.+ +.++.+|+++|+++|++ ++++|+++.++|+
T Consensus 119 ~--~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~ 195 (467)
T 2oqx_A 119 L--DRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195 (467)
T ss_dssp C--CTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCG
T ss_pred C--CccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccC
Confidence 1 11 457776 5674 3444445556654433 222 12367999999999984 7899999999999
Q ss_pred c-ccc---cChHHHHHHHHHhhhccCCCccEEeeccccc-ccc-------cccCCCCccccC---CCCeeEEEEcCcccC
Q 014163 215 T-GEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGG-FIA-------PFLYPDLEWDFR---LPLVKSINVSGHKYG 279 (429)
Q Consensus 215 t-G~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~-~~~-------~~~~~~~~~~~~---~~~~d~~~~s~hK~~ 279 (429)
+ |.+ +++++|+++|++| |+++|+|++++. ... .+. ......+. ...+|+++++.||++
T Consensus 196 ~gG~~~~~~~l~~i~~la~~~------gi~li~D~a~~~e~~~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~~s~sK~~ 268 (467)
T 2oqx_A 196 AGGQPVSLANLKAMYSIAKKY------DIPVVMDSARFAENAYFIKQREAEYK-DWTIEQITRETYKYADMLAMSAKKDA 268 (467)
T ss_dssp GGCBCCCHHHHHHHHHHHHHT------TCCEEEECTTHHHHHHHHHHHCGGGT-TSCHHHHHHHHGGGCSEEEEESSSTT
T ss_pred CCCccCCHHHHHHHHHHHHHc------CCEEEEEchhhhhhhhhccccccccc-CccHHHHhhhhhccCCeEEEeccccc
Confidence 8 765 5689999999999 999999988754 211 011 10000111 134788899999998
Q ss_pred CCCCCeEEEEEeCC---CCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Q 014163 280 LVYAGVGWVVWRTK---DDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356 (429)
Q Consensus 280 ~~p~g~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~ 356 (429)
+.|.| |+++.+++ +.+ ..+.....+. +...++ ++.......++..++...-. ++.+++..++++++.+
T Consensus 269 g~~~G-g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~---~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~ 339 (467)
T 2oqx_A 269 MVPMG-GLLCMKDDSFFDVY-TECRTLCVVQ-EGFPTY---GGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVD 339 (467)
T ss_dssp CCSSC-EEEEECSGGGHHHH-HHHHHHHHHT-TSSCCC---CCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CCCCc-eEEEecChhHHHHH-HHHHHhhhcc-CCcccc---cchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHH
Confidence 77655 66655432 111 1111110011 111111 22222222112122221110 2345556778899999
Q ss_pred HHHhCCCeEEeeCCCCceEEEEEecC-CCCCCHHHH-HHHHHHHH-hccCceecccC----C--C-----CCCCceEEEE
Q 014163 357 GLEKTGRFEILSKDVGVPLVAFSLKD-SSAHTVFEI-SEGLRKKL-NRFQVVYPQKL----P--M-----SYPWSTKLRV 422 (429)
Q Consensus 357 ~L~~~~~~~~~~~~~~~~~v~f~~~~-~~~~~~~~~-~~~L~~~l-~~~G~~~~~~~----~--~-----~~~~~~~lRi 422 (429)
.|+++ ++++. +. ....+.+.+.. ..+.+..++ ...|.++| .++|+.+.+.. . + ...+...+|+
T Consensus 340 ~L~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl 416 (467)
T 2oqx_A 340 GLEEI-GVVCQ-QA-GGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL 416 (467)
T ss_dssp HHHHT-TCCEE-EE-CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred HHHHC-CCeee-cC-CceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEE
Confidence 99988 57766 43 45566666631 012232333 33444444 48999886521 1 0 0112367999
Q ss_pred Eecc
Q 014163 423 ISHL 426 (429)
Q Consensus 423 ~~~~ 426 (429)
+++.
T Consensus 417 ~~~~ 420 (467)
T 2oqx_A 417 TIPR 420 (467)
T ss_dssp CCCT
T ss_pred EecC
Confidence 9863
No 195
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.81 E-value=3.5e-19 Score=174.89 Aligned_cols=308 Identities=15% Similarity=0.105 Sum_probs=186.5
Q ss_pred CCcccccccc-CCC-hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCC--CCCCCceEeCCchHHHH
Q 014163 56 PRLNLASFVT-TWM-EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVAD--DKTAVGVGTVGSSEAIM 131 (429)
Q Consensus 56 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~--~~~~~~~~t~g~t~a~~ 131 (429)
..++|+.+.+ +.+ ++.+.+++.++.......|....+..++++++.+++ .|..... ++......|.|+++|+.
T Consensus 42 ~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~---~~~~~~~~~~~~i~~~~~~~g~ga~~ 118 (409)
T 4eu1_A 42 RKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLC---FGPTCAALRDGRIASCQTLGGTGALR 118 (409)
T ss_dssp SCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHH---HCSSCHHHHTTCEEEEEESHHHHHHH
T ss_pred CceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHH---cCCCchhhccCceeeeecccchHHHH
Confidence 4467777776 443 344556666554334445656667788888876666 3543100 01111145889999988
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc-CCccccCHHHHHHHhhh---CCeEEE
Q 014163 132 LAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE-EGYYVMNPVKAVELVDE---NTICVA 207 (429)
Q Consensus 132 ~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~~---~~~~v~ 207 (429)
.+...+..- -..++.|+++.++|.++...++..|++++.+|++ ++++.+|+++|++++++ ++++++
T Consensus 119 ~~~~~~~~~----------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~ 188 (409)
T 4eu1_A 119 IGGDLLNRF----------VANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILV 188 (409)
T ss_dssp HHHHHGGGT----------SSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHh----------cCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEE
Confidence 765543220 0023689999999999999999999999999984 34578999999999973 456677
Q ss_pred EeeCCCccccccC---hHHHHHHHHHhhhccCCCccEEeecccccccccccCC----CCcc-cc-CCCCeeEEEEcCccc
Q 014163 208 AILGSTLTGEFED---VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP----DLEW-DF-RLPLVKSINVSGHKY 278 (429)
Q Consensus 208 ~~~~~~~tG~~~~---l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~----~~~~-~~-~~~~~d~~~~s~hK~ 278 (429)
+++|+||||.+.+ +++|+++|++| ++++++|++|+++.. .+ .... .+ ....-..+..+..|.
T Consensus 189 ~~~p~NPtG~~~~~~~l~~i~~~~~~~------~~~li~De~y~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 259 (409)
T 4eu1_A 189 HACAHNPTGVDPTHDDWRQVCDVIKRR------NHIPFVDMAYQGFAT---GQLDYDAFVPRHLVDMVPNLIVAQSFSKN 259 (409)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHT------TCEEEEEESCTTTTT---SCHHHHTHHHHHHHTTSSCCEEEEECTTT
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHhC------CcEEEEecccccccc---CCcccchHHHHHHHhhCCcEEEEecCccc
Confidence 7999999999866 55699999999 999999999987432 11 0000 11 111122444566686
Q ss_pred CC-CCCCeEEE--EEeCCCC---cccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC--------HHHHHHHH
Q 014163 279 GL-VYAGVGWV--VWRTKDD---LPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG--------FEGYKNIM 344 (429)
Q Consensus 279 ~~-~p~g~g~l--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~--------~~g~~~~~ 344 (429)
++ ++.++|++ ++.+++. +...+........ .+. ..+.++++...+. .+.+++..
T Consensus 260 ~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~---------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (409)
T 4eu1_A 260 FGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMY---------NNP---PLYGAWVVSSILKDPQLTALWKKELKQMS 327 (409)
T ss_dssp SSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHH---------SSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhc---------CCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 54 77889997 5544321 1111110000000 111 1223333333332 23467778
Q ss_pred HHHHHHHHHHHHHHHhCCC---eEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecc
Q 014163 345 ENCMGNARALREGLEKTGR---FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 345 ~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~ 408 (429)
++..++++++.+.|++++. +++..+ ..+++.|. +.+. ++...|. .++|+.+.+
T Consensus 328 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~--~~~~~~~~-----~~~~-~~~~~ll---~~~gv~v~p 383 (409)
T 4eu1_A 328 SRIAEVRKRLVSELKACGSVHDWSHIER--QVGMMAYT-----GLTR-EQVELLR---SEYHIYMTL 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCHHHHH--SCSSEEEC-----CCCH-HHHHHHH---HHHCEECCT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcceecC--CceEEEEe-----CCCH-HHHHHHH---HcCCEEEcC
Confidence 8889999999999998752 444333 34555552 1222 3344443 267998753
No 196
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.81 E-value=5.7e-19 Score=173.20 Aligned_cols=247 Identities=15% Similarity=0.104 Sum_probs=166.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCceE---eCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CCchHHH-----
Q 014163 98 NRCVNMIAHLFNTPVADDKTAVGVG---TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWE----- 168 (429)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~---t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~----- 168 (429)
+++.+.+++++|.+. .++ +++|++||..++.++.+ .+++|++++ +.|....
T Consensus 77 ~~Le~~lA~l~g~e~-------alv~p~~~sGt~A~~~al~all~-------------pGD~Vl~~~~~~y~~~~~~~g~ 136 (427)
T 3hvy_A 77 DSLDRVYANIFNTES-------AFVRPHFVNGTHAIGAALFGNLR-------------PNDTMMSICGMPYDTLHDIIGM 136 (427)
T ss_dssp HHHHHHHHHHHTCSE-------EEEETTCCSHHHHHHHHHHHTCC-------------TTCEEEECSSSCCGGGHHHHTC
T ss_pred HHHHHHHHHHhCCCc-------eEEeCCCCcHHHHHHHHHHHhcC-------------CCCEEEEeCCCCchhHHHHhcc
Confidence 344566899999974 455 78999999988887654 236899987 7776554
Q ss_pred ------HHHHhcCceeEEEeccCCccccCHHHHHHHhh--hCCeEEEEee----CCCccccccChHHHHHHHHH--hhhc
Q 014163 169 ------KFARYFEVELKEVKLEEGYYVMNPVKAVELVD--ENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEE 234 (429)
Q Consensus 169 ------~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--~~~~~v~~~~----~~~~tG~~~~l~~I~~la~~--~~~~ 234 (429)
..++..|++++.+|. ++ +.+|+++|+++++ ++|++|++++ ++|++|.+.|+++|+++|++ +
T Consensus 137 ~~~~~~~~l~~~G~~~~~v~~-~~-~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~--- 211 (427)
T 3hvy_A 137 DDSKKVGSLREYGVKYKMVDL-KD-GKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNE--- 211 (427)
T ss_dssp CTTCCSCCTGGGTCEEEECCC-BT-TBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCS---
T ss_pred ccchhhhHHHHcCCEEEEecC-CC-CCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCC---
Confidence 345667999999988 43 7899999999999 7899999999 99999999999999999999 8
Q ss_pred cCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCC--CCeEEEEEeCCCCcccccccccCCCCCCCC
Q 014163 235 TGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY--AGVGWVVWRTKDDLPDELVFHINYLGSDQP 312 (429)
Q Consensus 235 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p--~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 312 (429)
|++++||++|+.+.. ... +.. .++|+++.+.||+++++ ...|+++.+ ++ +.+.+.......+..
T Consensus 212 ---g~~livD~a~~~~~~---~~~-p~~---~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~-li~~l~~~~~~~~~g-- 277 (427)
T 3hvy_A 212 ---NVIVFVDNCYGEFVE---EKE-PTD---VGADIIAGSLIKNIGGGIATTGGYIAGK-EE-YVTQATFRVTVPGIG-- 277 (427)
T ss_dssp ---SSEEEEECTTCTTTS---SSC-GGG---GTCSEEEEETTSGGGTTTCCSCEEEEEC-HH-HHHHHHHHHSCTTTG--
T ss_pred ---CCEEEEECCcccccc---CCC-Ccc---cCCeEEEECCcccccccccceEEEEEEC-HH-HHHHHHHHhhcCCcc--
Confidence 999999999986531 111 111 25899999999998763 233777764 32 223222211101000
Q ss_pred CceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCCCce-----EEEEEecCCCCCC
Q 014163 313 TFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVP-----LVAFSLKDSSAHT 387 (429)
Q Consensus 313 ~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-----~v~f~~~~~~~~~ 387 (429)
.. ...... ..+.+++.+ .....++++..+++.++.+.|+++| +++. +. ... +++|.+.+ ...
T Consensus 278 -~~--~~~~~~---~a~~~~~gl--~~~~~r~~~~~~~a~~la~~L~~~g-~~V~-p~-~~~~~~~li~~~~l~~--~~~ 344 (427)
T 3hvy_A 278 -GE--CGSTFG---VMRSLYEGL--FMAPHVTIEAVKGAVFCARIMELAG-FDVL-PK-YNDKRTDIIQAIKFND--EKK 344 (427)
T ss_dssp -GG--CCCCTT---CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CEEE-SC-TTSCCSSSEEEEECSS--HHH
T ss_pred -cc--cCCCHH---HHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHhCC-Ceec-CC-CCCCCceEEEEEeCCC--HHH
Confidence 00 011001 123333222 3346778889999999999999998 6774 32 223 77887742 223
Q ss_pred HHHHHHHHH
Q 014163 388 VFEISEGLR 396 (429)
Q Consensus 388 ~~~~~~~L~ 396 (429)
...+.+.|+
T Consensus 345 ~~~f~~~l~ 353 (427)
T 3hvy_A 345 LIDFIKGIQ 353 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 444555554
No 197
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.81 E-value=2e-19 Score=175.61 Aligned_cols=311 Identities=13% Similarity=0.026 Sum_probs=192.4
Q ss_pred CCCccccccccCCChHH-HHHHHHHHc--Cc--CCCCCccChhh-----HHHHHHHHHHHHHhhCCCCCCCCCCCceEeC
Q 014163 55 NPRLNLASFVTTWMEPE-CDKLVMASI--NK--NYVDMDEYPVT-----TELQNRCVNMIAHLFNTPVADDKTAVGVGTV 124 (429)
Q Consensus 55 ~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~--~~~~~~~~~~~-----~~le~~~~~~la~l~g~~~~~~~~~~~~~t~ 124 (429)
.+.++|..+.|+++.|. +.+++.... .. ....|....+. .++++.+.+++. ..|.+.+.+ ..+++|+
T Consensus 22 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~--~~i~~t~ 98 (391)
T 3bwn_A 22 DFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATED--RYIVVGT 98 (391)
T ss_dssp TSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSS--SEEEEEE
T ss_pred CCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCC--CeEEEeC
Confidence 34456777777665543 444432222 21 22345555566 889988888877 457654321 2489999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCc----EEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh
Q 014163 125 GSSEAIMLAGLAFKRKWQQKRKEQGKPYDKP----NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD 200 (429)
Q Consensus 125 g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~----~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~ 200 (429)
|+++++.+++.++.+. ++ +|++++++|..+..+++..|++++.++++.+. ++ .
T Consensus 99 G~~~al~~~~~~l~~~-------------Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~--l~--------~ 155 (391)
T 3bwn_A 99 GSTQLCQAAVHALSSL-------------ARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWG--FD--------K 155 (391)
T ss_dssp HHHHHHHHHHHHHHHT-------------SSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTT--CC--------C
T ss_pred ChHHHHHHHHHHhcCC-------------CCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHH--cC--------C
Confidence 9999999999888652 24 89999999999999999999999999987543 22 2
Q ss_pred hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccC-
Q 014163 201 ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG- 279 (429)
Q Consensus 201 ~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~- 279 (429)
+++++|++++|+||||.+.+ +|++ +++ +.++++++|++|+.. . .. ... .....+.+..|.+|.+
T Consensus 156 ~~~k~v~l~~p~NPtG~~~~--~l~~--~~~----~~~~~ii~De~y~~~--~-~~---~l~-~~~~~~i~~~S~SK~~g 220 (391)
T 3bwn_A 156 KGPYIELVTSPNNPDGTIRE--TVVN--RPD----DDEAKVIHDFAYYWP--H-YT---PIT-RRQDHDIMLFTFSKITG 220 (391)
T ss_dssp CSCEEEEEESSCTTTCCCCC--CCC-----------CCCEEEEECTTCST--T-TS---CCC-CCBCCSEEEEEHHHHHS
T ss_pred CCCEEEEECCCCCCCchhHH--HHHH--Hhh----cCCCEEEEeCCCCCC--C-CC---ccc-cCCCCeEEEEechhhcC
Confidence 57899999999999999975 4544 225 004999999999731 0 00 111 1123567788889976
Q ss_pred CCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcC---------HHHHHHHHHHHHHH
Q 014163 280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG---------FEGYKNIMENCMGN 350 (429)
Q Consensus 280 ~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~---------~~g~~~~~~~~~~~ 350 (429)
+++.++|++++.+++.. ..+.....+.. .+.+.....++..+++.-. ...+++..++..++
T Consensus 221 ~~GlRiG~~~~~~~~l~-~~l~~~~~~~~---------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (391)
T 3bwn_A 221 HAGSRIGWALVKDKEVA-KKMVEYIIVNS---------IGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNR 290 (391)
T ss_dssp CGGGCEEEEEECCHHHH-HHHHHHHHHHH---------SSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHH
T ss_pred CCccceEEEEecCHHHH-HHHHHHhcccc---------cCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHH
Confidence 47788999887433222 22211111100 1111122222223332210 23467788888999
Q ss_pred HHHHHHHHHhCCCeEEeeCCC------------CceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCce
Q 014163 351 ARALREGLEKTGRFEILSKDV------------GVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWST 418 (429)
Q Consensus 351 ~~~l~~~L~~~~~~~~~~~~~------------~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~ 418 (429)
++++.+.|++++++++..+.. ...++.+.+... ..+.+.|. ++|+.+.+...... +..
T Consensus 291 ~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~-----~~~~~~l~----~~gV~v~pg~~fg~-~~~ 360 (391)
T 3bwn_A 291 WEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE-----TDLVSELR----RHKVMSRAGERCGS-DKK 360 (391)
T ss_dssp HHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS-----CCHHHHHH----HTTEECEEGGGGTC-CTT
T ss_pred HHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH-----HHHHHHHH----HCCEEEccCCCCCC-CCC
Confidence 999999999987677653321 111445555421 24455555 89999887521111 346
Q ss_pred EEEEEecc
Q 014163 419 KLRVISHL 426 (429)
Q Consensus 419 ~lRi~~~~ 426 (429)
++|+++++
T Consensus 361 ~iRis~~~ 368 (391)
T 3bwn_A 361 HVRVSMLS 368 (391)
T ss_dssp EEEEESCS
T ss_pred EEEEEecC
Confidence 79999975
No 198
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.81 E-value=5.4e-18 Score=167.48 Aligned_cols=310 Identities=10% Similarity=-0.041 Sum_probs=183.0
Q ss_pred ChHHHHHHHHHHcCcCCCC-CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
.+|.+.+++.+.+...... +..++ .....++.+.++++++.+. ..+.+|+||++|+..++.+++... ..
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~~~-----~~v~~~~ggtea~~~ai~~~~~~~-~~-- 129 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFGGIT--HAPAIELCRKLVAMTPQPL-----ECVFLADSGSVAVEVAMKMALQYW-QA-- 129 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCSSEE--CHHHHHHHHHHHHHSCTTC-----CEEEEESSHHHHHHHHHHHHHHHH-HH--
T ss_pred CCHHHHHHHHHHHHhcccccccccC--CHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHHh-cc--
Confidence 4677888888777543221 11222 2234456677899998654 248999999999999998765311 10
Q ss_pred hcCCCCCCcEEEEcCCCch-HHHHHHHhcC-------------ceeEEEeccC-----CccccCHHHHHHHhhh---CCe
Q 014163 147 EQGKPYDKPNIVTGANVQV-CWEKFARYFE-------------VELKEVKLEE-----GYYVMNPVKAVELVDE---NTI 204 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~h~-s~~~~~~~~G-------------~~v~~v~~~~-----~~~~~d~~~l~~~i~~---~~~ 204 (429)
+|. .++.|++++++|+ +...++...| .+++.++++. ..+.+|+++|++++++ +++
T Consensus 130 -~g~--~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 206 (429)
T 1s0a_A 130 -KGE--ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA 206 (429)
T ss_dssp -HTC--CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEE
T ss_pred -cCC--CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEE
Confidence 111 1257888776544 3333332222 1456666642 2135899999999984 455
Q ss_pred EEEEeeC-CCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccC
Q 014163 205 CVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG 279 (429)
Q Consensus 205 ~v~~~~~-~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~ 279 (429)
+|+++.. +|++|.+.+ +++|+++|++| |+++|+|++|.++.. .......+......|.++++ |++
T Consensus 207 ~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~------~~~li~De~~~~~g~--~g~~~~~~~~~~~~d~~t~s--K~l 276 (429)
T 1s0a_A 207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE------GILLIADEIATGFGR--TGKLFACEHAEIAPDILCLG--KAL 276 (429)
T ss_dssp EEEECSSEECTTTCEEBCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGG
T ss_pred EEEEeecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeehhhCCcc--cchHHHhhhcCCCCCEEEec--ccc
Confidence 6555555 688998766 99999999999 999999999986321 11111111111236777655 666
Q ss_pred CCC-CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Q 014163 280 LVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGL 358 (429)
Q Consensus 280 ~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L 358 (429)
.++ .++|+++.++ +.. +.+.... ........+ .+.+.....+..++++.+.. ++..++..++++++.+.|
T Consensus 277 ~~G~~~iG~~~~~~-~~~-~~l~~~~--~~~~~~~~t--~~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L 347 (429)
T 1s0a_A 277 TGGTMTLSATLTTR-EVA-ETISNGE--AGCFMHGPT--FMGNPLACAAANASLAILES---GDWQQQVADIEVQLREQL 347 (429)
T ss_dssp GTSSSCCEEEEECH-HHH-HHHHTST--TSSCSCCCT--TTTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH
T ss_pred cCCCccceEEEeCH-HHH-HHhhcCC--CcccccCCC--CCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 667 8899998754 222 2221100 000000001 11222334444455554322 245677788899999999
Q ss_pred HhC---CCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 359 EKT---GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 359 ~~~---~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
+++ +++..+.. ...++.+.+.. ..+..++.+.|. ++|+.++.. ...+|+++
T Consensus 348 ~~l~~~~~~~~~~~--~g~~~~~~~~~--~~~~~~l~~~l~----~~Gi~v~~~-------~~~iRis~ 401 (429)
T 1s0a_A 348 APARDAEMVADVRV--LGAIGVVETTH--PVNMAALQKFFV----EQGVWIRPF-------GKLIYLMP 401 (429)
T ss_dssp GGGGGCTTEEEEEE--ETTEEEEEESS--CBCHHHHHHHHH----HTTEECCCB-------TTEEEECC
T ss_pred HHHhcCCCEEEEEE--eeEEEEEEECC--cccHHHHHHHHH----HCCCEEecc-------CCEEEEEC
Confidence 876 44543322 34567777643 345667777777 899987642 14699984
No 199
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.81 E-value=1.2e-17 Score=163.06 Aligned_cols=299 Identities=14% Similarity=-0.006 Sum_probs=180.0
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+......+.. ...+..+++.+++++++|.+ ...+|+||++|+..++.+++.....
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~~~~-------~v~~~~gg~ea~~~al~~~~~~~~~---- 119 (395)
T 3nx3_A 53 NHAKFNAKIKAQVDKLLHTSNL--YYNENIAAAAKNLAKASALE-------RVFFTNSGTESIEGAMKTARKYAFN---- 119 (395)
T ss_dssp SCHHHHHHHHHHHTTCSCCCTT--SBCHHHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHHhcCCC-------eEEEeCCHHHHHHHHHHHHHHHhhc----
Confidence 4678888888887654332222 23445667778899998843 3899999999999999987654221
Q ss_pred cCCCCCCcEEEEcCCCchHHH-HHHHhc------------CceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCc
Q 014163 148 QGKPYDKPNIVTGANVQVCWE-KFARYF------------EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTL 214 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~-~~~~~~------------G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~ 214 (429)
.| .+++.|++.++.|+.+. .+.... +.++..+|. .|+++|++++++++++|++..++++
T Consensus 120 ~g--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~l~~~l~~~~~~v~~~~~~~~ 191 (395)
T 3nx3_A 120 KG--VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY------NDISSVEKLVNEKTCAIILESVQGE 191 (395)
T ss_dssp TT--CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT------TCHHHHHTTCCTTEEEEEEESEECT
T ss_pred cC--CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC------CCHHHHHHhccCCeEEEEEeCccCC
Confidence 11 12357777777665332 222221 123333332 2799999999988899999888889
Q ss_pred cccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeEEEEE
Q 014163 215 TGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVW 290 (429)
Q Consensus 215 tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~ 290 (429)
+|.+.+ +++|+++|++| |+++|+|++|.++.. .......+......|.++++ |.+.++.++|+++.
T Consensus 192 ~G~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~ 261 (395)
T 3nx3_A 192 GGINPANKDFYKALRKLCDEK------DILLIADEIQCGMGR--SGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVI 261 (395)
T ss_dssp TSCEECCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--CCcchhHHhcCCCCCEEEec--ccccCCCceEEEEE
Confidence 999877 99999999999 999999999986421 11111111111135777655 66666788999887
Q ss_pred eCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH----hCCCeEE
Q 014163 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE----KTGRFEI 366 (429)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~----~~~~~~~ 366 (429)
+++ .+.+.+.. ...+ .+ .+.+.....+..++++.+.. ++..++.+++.+++++.|. +++.+..
T Consensus 262 ~~~-~~~~~~~~---~~~~----~~--~~~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (395)
T 3nx3_A 262 NQK-VASNSLEA---GDHG----ST--YGGNPLVCAGVNAVFEIFKE---EKILENVNKLTPYLEQSLDELINEFDFCKK 328 (395)
T ss_dssp CHH-HHHHHSCT---TCCS----SC--BSCCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred chh-hhhhhcCC---cccC----CC--CCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 542 20121111 0000 01 11222333334444544322 2344455555555555554 4554443
Q ss_pred eeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 367 LSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 367 ~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
+.. ..+++.|.+.. ..+..++.+.|. ++|+.++.. +..++|++.
T Consensus 329 ~~~--~g~~~~~~~~~--~~~~~~~~~~l~----~~Gi~v~~~------~~~~iRi~~ 372 (395)
T 3nx3_A 329 RKG--LGFMQGLSLDK--SVKVAKVIQKCQ----ENALLLISC------GENDLRFLP 372 (395)
T ss_dssp EEE--ETTEEEEEECT--TSCHHHHHHHHH----HTTEECEEE------TTTEEEECC
T ss_pred EEe--EEEEEEEEeCC--cchHHHHHHHHH----HCCCEEecC------CCCEEEEEC
Confidence 322 35677777753 235667777777 899987652 245799974
No 200
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.80 E-value=9.1e-18 Score=165.92 Aligned_cols=319 Identities=10% Similarity=-0.019 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 014163 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ 148 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~ 148 (429)
+|.+.+++.+.+..... +.......+...++.++++++++.+.+ .+.+|+||++|+..++++++..+.. .
T Consensus 47 ~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~-----~v~~~~gg~ea~~~al~~~~~~~~~----~ 116 (430)
T 3i4j_A 47 RAEVGERMAAQAARLPF-VHGSQFSSDVLEEYAGRLARFVGLPTF-----RFWAVSGGSEATESAVKLARQYHVE----R 116 (430)
T ss_dssp CHHHHHHHHHHHHHCCC-CCTTTCEEHHHHHHHHHHHHHTTCTTC-----EEEEESSHHHHHHHHHHHHHHHHHH----T
T ss_pred CHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCCCCCC-----EEEEeCcHHHHHHHHHHHHHHHHHh----c
Confidence 67788888777654321 222233445666788889999987542 4899999999999999988764321 1
Q ss_pred CCCCCCcEEEEcCCCchHHHHHHHhcCc---------------eeEEEeccCC--ccccCHHHHHHHhh----hCCeEEE
Q 014163 149 GKPYDKPNIVTGANVQVCWEKFARYFEV---------------ELKEVKLEEG--YYVMNPVKAVELVD----ENTICVA 207 (429)
Q Consensus 149 g~~~~~~~vi~~~~~h~s~~~~~~~~G~---------------~v~~v~~~~~--~~~~d~~~l~~~i~----~~~~~v~ 207 (429)
|. .++++|++.+++|+.+...+..++. ++..+|.+.. .+..|+++|+++++ +++.+|+
T Consensus 117 g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi 195 (430)
T 3i4j_A 117 GE-PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFM 195 (430)
T ss_dssp TC-TTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEE
T ss_pred CC-CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 1235788877777655443333322 3444444321 03457899999997 3445565
Q ss_pred EeeCCC-ccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccC-CCCeeEEEEcCcccCCC
Q 014163 208 AILGST-LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLV 281 (429)
Q Consensus 208 ~~~~~~-~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~s~hK~~~~ 281 (429)
++..++ ++|.+.+ +++|.++|++| |+++|+|++|.++.. .......... -...|.++++ |.+.+
T Consensus 196 ~~p~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~~~--~g~~~~~~~~~~~~~di~t~s--K~l~~ 265 (430)
T 3i4j_A 196 AEPVVGASDAALAPAPGYYERVRDICDEA------GIIFIADEVMSGMGR--CGSPLALSRWSGVTPDIAVLG--KGLAA 265 (430)
T ss_dssp ECSSCCGGGTTCCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTTCCCSEEEEC--GGGTT
T ss_pred EcCcccCcCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhCCCc--ccchhhhhhhcCCCCcEEEEc--ccccC
Confidence 655566 7888766 99999999999 999999999986421 1111111111 1135666655 87777
Q ss_pred C-CCeEEEEEeCCCCccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q 014163 282 Y-AGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (429)
Q Consensus 282 p-~g~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~ 359 (429)
+ +++|+++.++ + +.+.+.... .+.... + .+.+.....+..++++.+..+ +..++.+++.+++++.|.
T Consensus 266 G~~r~G~~~~~~-~-i~~~~~~~~~~~~~~~--t----~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~l~ 334 (430)
T 3i4j_A 266 GYAPLAGLLAAP-Q-VYETVMGGSGAFMHGF--T----YAGHPVSVAAGLSVLDIVERE---DLTGAAKERGAQLLAGLQ 334 (430)
T ss_dssp TSSCCEEEEECH-H-HHHHHHHTTCBCCCCC--T----TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred CccccEEEEECH-H-HHHHHhccCCcccccC--C----CCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHH
Confidence 7 7889988743 2 222221110 011110 0 111112333334444443232 334444445555544444
Q ss_pred ----hCCCeEEeeCCCCceEEEEEecCCC-------CCCHHHHHHHHHHHHhccCceeccc-CCCCCCCceEEEEEec
Q 014163 360 ----KTGRFEILSKDVGVPLVAFSLKDSS-------AHTVFEISEGLRKKLNRFQVVYPQK-LPMSYPWSTKLRVISH 425 (429)
Q Consensus 360 ----~~~~~~~~~~~~~~~~v~f~~~~~~-------~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~~~~~~~lRi~~~ 425 (429)
+++.+..+.+ ...++.+.+.+.. .....++.+.|. ++|+.+.+. .+..-.+..++|++++
T Consensus 335 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~v~~~~~~~~~~~~~~iRi~~~ 406 (430)
T 3i4j_A 335 ALQARFPQMMQVRG--TGLLLGVVLGDLATGQAFETPGIASRIGAAAL----KRGLITYPGSGAEPNGRGDHLLLGPP 406 (430)
T ss_dssp HHHHHCTTEEEEEE--ETTEEEEEEC------------CHHHHHHHHH----HTTEECC-----------CEEEECCC
T ss_pred HHHHhCCCeEEEEE--EEEEEEEEeccccccCCCccHHHHHHHHHHHH----hCCCEEEecccccCCCCCCEEEEECC
Confidence 5565655432 3556666664211 011244555555 999998764 2222233567999864
No 201
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.80 E-value=1.2e-17 Score=164.73 Aligned_cols=305 Identities=12% Similarity=0.008 Sum_probs=179.5
Q ss_pred ChHHHHHHHHHHcCcCCC---CCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINKNYV---DMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQK 144 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~ 144 (429)
++|.+.+++.+.+..... .+...+... ++++.++++++.+. + ..+.+|+|+++|+.+++..++.- .
T Consensus 58 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~----~l~~~la~~~~~~~--~--~~v~~~~g~~~a~~~~~~~a~~~-~-- 126 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKLSHTCFQVLAYEPYL----ELCEIMNQKVPGDF--A--KKTLLVTTGSEAVENAVKIARAA-T-- 126 (426)
T ss_dssp TCHHHHHHHHHHTTTCSCCCTTTEECHHHH----HHHHHHHHHSSCSS--C--EEEEEESSHHHHHHHHHHHHHHH-H--
T ss_pred CCHHHHHHHHHHHHhCCCccccccCCHHHH----HHHHHHHHhCCccc--c--cEEEEeCchHHHHHHHHHHHHHh-h--
Confidence 567788888888765322 122233333 55566788873221 0 23899999999999998844321 0
Q ss_pred HHhcCCCCCCcEEEEcCCCc-hHHHHHHHhcCce-------------eEEEeccC----CccccCHHHHHHHhh-----h
Q 014163 145 RKEQGKPYDKPNIVTGANVQ-VCWEKFARYFEVE-------------LKEVKLEE----GYYVMNPVKAVELVD-----E 201 (429)
Q Consensus 145 ~~~~g~~~~~~~vi~~~~~h-~s~~~~~~~~G~~-------------v~~v~~~~----~~~~~d~~~l~~~i~-----~ 201 (429)
.+..|++.+++| ..+..++...|.+ ++.+|++. .++.+|+++|+++++ +
T Consensus 127 --------~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (426)
T 1sff_A 127 --------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE 198 (426)
T ss_dssp --------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred --------CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence 113677766655 4455556665543 66777753 124589999999997 3
Q ss_pred CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcc
Q 014163 202 NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHK 277 (429)
Q Consensus 202 ~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK 277 (429)
++++|+++...++||.+.+ +++|.++|++| ++++|+|++|+++.. .......+..-..+|.+++ +|
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~------~~~li~De~~~~~~~--~g~~~~~~~~~~~~di~s~--sK 268 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH------GIMLIADEVQSGAGR--TGTLFAMEQMGVAPDLTTF--AK 268 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTSCCSEEEE--CG
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEechhhccCc--ccchhhhhhcCCCCCEEEE--cc
Confidence 5666666443333997777 99999999999 999999999986321 1111111111113676644 48
Q ss_pred cCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Q 014163 278 YGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREG 357 (429)
Q Consensus 278 ~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~ 357 (429)
+++++.++|+++.+++ .. +.+.. ... ..+ .+.+.....++.++++.+..+ +..++..++++++.+.
T Consensus 269 ~~~~GlriG~~~~~~~-~~-~~l~~--~~~---~~~----~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~ 334 (426)
T 1sff_A 269 SIAGGFPLAGVTGRAE-VM-DAVAP--GGL---GGT----YAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDG 334 (426)
T ss_dssp GGGTSSCCEEEEEEHH-HH-TTSCT--TSB---CCS----SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred cccCCCceEEEEEcHH-HH-hhhcc--CCc---CcC----CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 8776677899988652 22 22110 000 001 122223444455555554332 3556677788888888
Q ss_pred HHh----CCCeEEeeCCCCceEEEEEecC------CCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 358 LEK----TGRFEILSKDVGVPLVAFSLKD------SSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 358 L~~----~~~~~~~~~~~~~~~v~f~~~~------~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
|++ ++.+..+. + ..+++.+.+.+ +.+.+..++.+.|. ++|+.+.+... ...++|++++
T Consensus 335 l~~~~~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~gi~v~~~~~----~~~~iRi~~~ 402 (426)
T 1sff_A 335 LLAIAEKHPEIGDVR-G-LGAMIAIELFEDGDHNKPDAKLTAEIVARAR----DKGLILLSCGP----YYNVLRILVP 402 (426)
T ss_dssp HHHHHHTCTTEEEEE-E-ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH----HTTEECEEEST----TSCEEEECCC
T ss_pred HHHHHHhCCCeEEEE-E-EEEEEEEEEecCccccCCChHHHHHHHHHHH----HCCcEEecCCC----CCCEEEEECC
Confidence 776 34333332 2 35677777742 11123445555555 89999875421 2456999874
No 202
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.80 E-value=1.3e-18 Score=169.97 Aligned_cols=215 Identities=17% Similarity=0.033 Sum_probs=147.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH----HHHh
Q 014163 98 NRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK----FARY 173 (429)
Q Consensus 98 ~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~----~~~~ 173 (429)
+++++.+++++|.+. .+++++|++|+.+++. +.. .+++|+++.+.|.+... .++.
T Consensus 58 ~~lr~~la~~~g~~~-------~i~~~sGt~a~~~al~-~~~-------------~gd~Vi~~~~~y~~~~~~~~~~~~~ 116 (393)
T 1n8p_A 58 ENLERAVAALENAQY-------GLAFSSGSATTATILQ-SLP-------------QGSHAVSIGDVYGGTHRYFTKVANA 116 (393)
T ss_dssp HHHHHHHHHHTTCSE-------EEEESCHHHHHHHHHH-TSC-------------SSCEEEEESSCCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCCCc-------EEEECChHHHHHHHHH-HcC-------------CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 356667899999863 6666777999999888 532 13689999999985433 4567
Q ss_pred cCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeeccccccccc
Q 014163 174 FEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAP 253 (429)
Q Consensus 174 ~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~ 253 (429)
.|++++.+|++ | ++|+++++++|++|++++++|++|.+.|+++|+++|++++. +.|+++|+|++|+.+..
T Consensus 117 ~G~~v~~v~~~------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~--~~~~~livD~a~~~~~~- 186 (393)
T 1n8p_A 117 HGVETSFTNDL------L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAA--GQDVILVVDNTFLSPYI- 186 (393)
T ss_dssp TCSCCEEESSH------H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTT--TTTCEEEEECTTTHHHH-
T ss_pred cCcEEEEeCCC------h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCC--CCCCEEEEeCCcccccc-
Confidence 79999998864 6 89999999899999999999999999999999999999810 11699999999987542
Q ss_pred ccCCCCccccCCCCeeEEEEcCcccCCCCC-Ce-EEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHH
Q 014163 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYA-GV-GWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQ 331 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~-g~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~a 331 (429)
. .. .. .++|+++.+.||+++++. ++ |+++.++++.. +.+....... |+.. .....+++
T Consensus 187 -~--~~-~~---~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~-~~l~~~~~~~----------g~~~--~~~~~~~~ 246 (393)
T 1n8p_A 187 -S--NP-LN---FGADIVVHSATKYINGHSDVVLGVLATNNKPLY-ERLQFLQNAI----------GAIP--SPFDAWLT 246 (393)
T ss_dssp -C--CG-GG---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH-HHHHHHHHHH----------CCCC--CHHHHHHH
T ss_pred -C--CH-HH---cCCeEEEEECcccccCCCCceeEEEEeCCHHHH-HHHHHHHHhc----------CCCC--CHHHHHHH
Confidence 1 11 11 158999999999875432 36 88776543222 2211111101 1111 12223333
Q ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCC-eE
Q 014163 332 FIRLGFEGYKNIMENCMGNARALREGLEKTGR-FE 365 (429)
Q Consensus 332 l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~-~~ 365 (429)
+..+ +.+...+++..++++++.+.|++.+. +.
T Consensus 247 ~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~ 279 (393)
T 1n8p_A 247 HRGL--KTLHLRVRQAALSANKIAEFLAADKENVV 279 (393)
T ss_dssp HHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEE
T ss_pred Hhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 3333 23566677778888899999988875 54
No 203
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.80 E-value=1.5e-17 Score=164.57 Aligned_cols=303 Identities=12% Similarity=-0.024 Sum_probs=175.0
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+.........+ ..+...++.+.+++++|.+. +.+|+||++|+..++.+++..... .
T Consensus 82 ~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~~-------v~~~~sGseA~~~al~~a~~~~~~---~ 149 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLTICSRAF--FSVPLGICERYLTNLLGYDK-------VLMMNTGAEANETAYKLCRKWGYE---V 149 (433)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTS--EEHHHHHHHHHHHHHHTCSE-------EEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred CCHHHHHHHHHHHHhCCCccCCc--CCHHHHHHHHHHHhhcCCCe-------EEEeCCHHHHHHHHHHHHHHHhhh---c
Confidence 56788888888876533211112 23445566677888888542 899999999999999987642110 0
Q ss_pred cCCCCCCcEEEEcCCCch-HHHHHHHhcC------------ceeEEEeccCCccccCHHHHHHHh-hhCCeEEEEeeCCC
Q 014163 148 QGKPYDKPNIVTGANVQV-CWEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELV-DENTICVAAILGST 213 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~-s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~ 213 (429)
.|...++++|++.+++|. +...++...| .++..+|. .|+++|++++ ++++++|+++..++
T Consensus 150 ~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~~vi~ep~~~ 223 (433)
T 1z7d_A 150 KKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY------DDLEALEEELKDPNVCAFIVEPIQG 223 (433)
T ss_dssp SCCCTTCCEEEEETTC--------------------------CEEEECT------TCHHHHHHHHTSTTEEEEEECSSBS
T ss_pred cCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC------CCHHHHHHHhCCCCEEEEEEECCCC
Confidence 111112357887776554 4444444444 23333332 3899999999 56677777666666
Q ss_pred cccccc----ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCC-CCeEEE
Q 014163 214 LTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVY-AGVGWV 288 (429)
Q Consensus 214 ~tG~~~----~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p-~g~g~l 288 (429)
++|.+. ++++|.++|++| |+++|+|++|.++.. .......+..-...|.+++ .|+++++ .++|++
T Consensus 224 ~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~g~--~g~~~~~~~~~~~~di~t~--sK~l~~G~~~~G~v 293 (433)
T 1z7d_A 224 EAGVIVPSDNYLQGVYDICKKY------NVLFVADEVQTGLGR--TGKLLCVHHYNVKPDVILL--GKALSGGHYPISAV 293 (433)
T ss_dssp TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEE
T ss_pred CCCccCCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--CCcchhhHhcCCCCCEEEE--CccccCCCCCeEEE
Confidence 789764 799999999999 999999999976321 1111111111113677654 4877776 678998
Q ss_pred EEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCe
Q 014163 289 VWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GRF 364 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~~ 364 (429)
+.+++ +.+.+.. .. . ..+ .+.+.....+..++++.+..+ +..++..++++++.+.|+++ +.+
T Consensus 294 ~~~~~--~~~~l~~--~~---~--~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~ 359 (433)
T 1z7d_A 294 LANDD--IMLVIKP--GE---H--GST--YGGNPLAASICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIV 359 (433)
T ss_dssp EECHH--HHTTCCT--TC---C--CCT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred EECHH--HHhhhcc--cc---c--ccc--CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 87642 2122111 00 0 111 111223334445555544332 45677778888888888765 322
Q ss_pred EEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 365 EILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 365 ~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
..+. + ...++.+.+.+. ..+..++.+.|. ++|+.+.+. +...+|+++.
T Consensus 360 ~~~~-~-~g~~~~i~~~~~-~~~~~~~~~~l~----~~Gv~v~~~------~~~~iRi~~~ 407 (433)
T 1z7d_A 360 RDVR-G-KGLLCAIEFKNE-LVNVLDICLKLK----ENGLITRDV------HDKTIRLTPP 407 (433)
T ss_dssp EEEE-E-ETTEEEEEECTT-TCCHHHHHHHHH----HTTEECCEE------TTTEEEECCC
T ss_pred EEEE-e-eeeEEEEEEccC-hhHHHHHHHHHH----HCCeEEecC------CCCEEEEECC
Confidence 2221 2 456777777532 134667777777 899987642 2456999764
No 204
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.79 E-value=2e-17 Score=158.42 Aligned_cols=322 Identities=13% Similarity=0.058 Sum_probs=200.9
Q ss_pred CChHHHHHHHHHHcCcCCC-C------CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCC--ceEeCCchHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYV-D------MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV--GVGTVGSSEAIMLAGLAF 137 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~--~~~t~g~t~a~~~al~a~ 137 (429)
+.+|.+.+++.+.+.+-+. . |..-....++|.-+++...++||++.. .| .+-..+|+.||+.++.++
T Consensus 65 ~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A----~w~VNVQP~SGs~AN~avy~Al 140 (490)
T 3ou5_A 65 FCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGVNVQPYSGSPANLAVYTAL 140 (490)
T ss_dssp CCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTT----TEEEECCCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCcc----ccCCCCCcCCHHHHHHHHHHHH
Confidence 4568888887766654322 1 222235689999999999999999852 22 355569999999999988
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEcC---CCchHHHH-----HHHhcCceeEEE--eccCCccccCHHHHHHHhhh-CCeEE
Q 014163 138 KRKWQQKRKEQGKPYDKPNIVTGA---NVQVCWEK-----FARYFEVELKEV--KLEEGYYVMNPVKAVELVDE-NTICV 206 (429)
Q Consensus 138 ~~~~~~~~~~~g~~~~~~~vi~~~---~~h~s~~~-----~~~~~G~~v~~v--~~~~~~~~~d~~~l~~~i~~-~~~~v 206 (429)
.++ ++.|+.-+ ..|.+... .....|.-...+ +++++++.+|.|++++...+ +|++|
T Consensus 141 l~P-------------GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklI 207 (490)
T 3ou5_A 141 LQP-------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI 207 (490)
T ss_dssp CC--------------CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEE
T ss_pred cCC-------------CCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeE
Confidence 762 25676443 45544332 223344444444 45666689999999998876 67765
Q ss_pred EEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCCCCCeE
Q 014163 207 AAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVG 286 (429)
Q Consensus 207 ~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~p~g~g 286 (429)
+ ...+.+. ...|++++.+||++. |+++++|.||-.++.. ...++- .++.+|+++.+.||.+.+|.| |
T Consensus 208 i-~G~SaY~-r~id~~~~reIAd~v------GA~Lm~DmAHiaGLVA--~g~~ps--P~~~ADvVTtTTHKTLrGPrG-G 274 (490)
T 3ou5_A 208 I-AGTSAYA-RLIDYARMREVCDEV------KAHLLADMAHISGLVA--AKVIPS--PFKHADIVTTTTHKTLRGARS-G 274 (490)
T ss_dssp E-ECCSSCC-SCCCHHHHHHHHHHH------TCEEEEECGGGHHHHH--TTSSCC--GGGTCSEEEEESSSTTCSCSC-E
T ss_pred E-ECCccCc-cccCHHHHHHHHhhc------ccEEEechhhhhhhhc--ccccCC--ccccceEEeccccccccCCCc-e
Confidence 4 4444443 445799999999999 9999999999554331 111111 124699999999999988876 7
Q ss_pred EEEEeCCCCccc-ccccccCCCCC----CCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014163 287 WVVWRTKDDLPD-ELVFHINYLGS----DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT 361 (429)
Q Consensus 287 ~l~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 361 (429)
++++++...... .......|-.. ....+.++|.+-...+.+...++.......++++.++..++++.|.+.|.+.
T Consensus 275 ~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~ 354 (490)
T 3ou5_A 275 LIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER 354 (490)
T ss_dssp EEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 888775311000 00000000000 0001123455555566666666655444457899999999999999999998
Q ss_pred CCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceeccc-CCCC--CCCceEEEEEe
Q 014163 362 GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK-LPMS--YPWSTKLRVIS 424 (429)
Q Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~-~~~~--~~~~~~lRi~~ 424 (429)
+ ++++....+.+++.+.+.+. +++..++.+.|. +.||.++.. .|.+ ......|||..
T Consensus 355 G-~~vvsGgTdnHlvLvDl~~~-g~tG~~ae~~Le----~agItvNkN~iP~D~sp~~~SGiRiGT 414 (490)
T 3ou5_A 355 G-YSLVSGGTDNHLVLVDLRPK-GLDGARAERVLE----LVSITANKNTCPGDRSAITPGGLRLGA 414 (490)
T ss_dssp T-CEEGGGSCSSSEEEEECGGG-TCCHHHHHHHHH----HTTEECEEECCTTCCCSSSCSEEEEES
T ss_pred C-CeeecCCCCceEEEEecccc-CCCHHHHHHHHH----HcCcEECCCCCCCCCCCCCCCeeEECC
Confidence 7 99987555788999988754 577788888888 899998754 3432 12234689864
No 205
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.79 E-value=1.6e-18 Score=170.70 Aligned_cols=253 Identities=14% Similarity=0.127 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CCchHHHHHHH---
Q 014163 97 QNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEKFAR--- 172 (429)
Q Consensus 97 e~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~~~~--- 172 (429)
.+++.+++++++|.+... . .++.++|++|+..++.++.+ .+++|+++. +.|.++...+.
T Consensus 67 ~~~l~~~la~~~g~~~~~---~-~i~~~sGt~Ai~~al~al~~-------------~Gd~Vl~~~~~~y~~~~~~~~l~g 129 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGL---V-RPQIISGTHAISTALFGILR-------------PGDELLYITGKPYDTLEEIVGVRG 129 (431)
T ss_dssp HHHHHHHHHHHTTCSEEC---C-BTTSCSHHHHHHHHHHTTCC-------------TTCEEEECSSSCCTTHHHHTTSSS
T ss_pred HHHHHHHHHHHhCCCccc---c-cceeeCHHHHHHHHHHHhCC-------------CCCEEEEeCCCCchhHHHHHhhcc
Confidence 567778899999997521 1 11134779999988877643 236898888 88988876653
Q ss_pred -------hcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEee----CCCccccccChHHHHHHHHH--hhhccCCCc
Q 014163 173 -------YFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAIL----GSTLTGEFEDVKLLHDLLTK--KNEETGWDT 239 (429)
Q Consensus 173 -------~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~----~~~~tG~~~~l~~I~~la~~--~~~~~~~~~ 239 (429)
..|++++.+|.+++ +.+|+++|+++++++|++|+++. +++++|.+.++++|+++|++ + |+
T Consensus 130 ~~~~~~~~~G~~~~~v~~~~~-~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~------~~ 202 (431)
T 3ht4_A 130 KGVGSFKEYNIGYNAVPLTEG-GLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP------DV 202 (431)
T ss_dssp CSSSCSGGGTCEEEECCBCTT-SSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT------TC
T ss_pred cccchHHHcCCEEEEeCCCCC-CCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC------CC
Confidence 47999999999875 89999999999999999999996 66667778999999999999 9 99
Q ss_pred cEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCCC---CCCeEEEEEeCCCCcccccccccCCCCCCCCCcee
Q 014163 240 PIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV---YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTL 316 (429)
Q Consensus 240 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~~---p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (429)
++++|++|+.+.. ..+ ... .++|.++.+.+|++++ +.| |+++.++ +. .+.+.......+... . .
T Consensus 203 ~livDea~~~~~~---~~~-~~~---~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~-~l-i~~l~~~~~~~~~g~-~--~ 269 (431)
T 3ht4_A 203 VVFVDNCYGEFIE---EQE-PCH---VGADLMAGSLIKNPGGGIVKTG-GYIVGKE-QY-VEACAYRLTSPGIGA-E--A 269 (431)
T ss_dssp EEEEECTTCTTSS---SCC-GGG---TTCSEEEEETTSGGGTTTCSSC-EEEEECH-HH-HHHHHHHHSCTTTTT-S--C
T ss_pred EEEEeCCChhhcc---CCC-ccc---cCCeEEEcCccccCCCCCCCce-EEEEecH-HH-HHHHHHHhccCCccc-c--c
Confidence 9999999987542 111 111 2589999999999655 556 8877643 22 222221111111100 0 0
Q ss_pred ccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeCCC--C-ceEEEEEecCCCCCCHHHHHH
Q 014163 317 NFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDV--G-VPLVAFSLKDSSAHTVFEISE 393 (429)
Q Consensus 317 ~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~-~~~v~f~~~~~~~~~~~~~~~ 393 (429)
..+... ...+...+ ..+..++++..+++.++.+.|++++ +++...+. + .-++.+.+.+ .....++.+
T Consensus 270 ~~~~~~--~~~~~~~l-----~~~~~~~~~~~~~a~~l~~~L~~~g-~~v~p~~~~~~~~li~~i~l~~--~~~~~~~~~ 339 (431)
T 3ht4_A 270 GASLYS--LQEMYQGF-----FLAPHVAGQALKGAIFTAAFLEKLG-MNTSPAWNAPRTDLIQSVQFDD--KDRMIAFCQ 339 (431)
T ss_dssp SCCCSC--SHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-CCEESCTTSCCSSSCCEEECCC--HHHHHHHHH
T ss_pred CccHHH--HHHHHhHh-----hhHHHHHHHHHHHHHHHHHHHHhCc-CEecCCCCCCCccEEEEEEeCC--HHHHHHHHH
Confidence 011110 11111222 2346677888999999999999987 66632211 1 1166777642 223445555
Q ss_pred HHH
Q 014163 394 GLR 396 (429)
Q Consensus 394 ~L~ 396 (429)
.|+
T Consensus 340 ~l~ 342 (431)
T 3ht4_A 340 AIQ 342 (431)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 206
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.79 E-value=1.8e-17 Score=164.16 Aligned_cols=304 Identities=13% Similarity=0.004 Sum_probs=181.9
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+.........+ ..+...++.+++++++|.+ .+.+++||++|+..++.+++..... .
T Consensus 93 ~~p~v~~Ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~-------~v~~~~sGseA~~~al~~~~~~~~~---~ 160 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLTLTSRAF--YNNVLGEYEEYITKLFNYH-------KVLPMNTGVEAGETACKLARKWGYT---V 160 (439)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTTS--EESSHHHHHHHHHHHHTCS-------EEEEESSHHHHHHHHHHHHHHHHHH---T
T ss_pred CCHHHHHHHHHHHHhcCcccCcc--CCHHHHHHHHHHHHhcCCC-------EEEEeCCHHHHHHHHHHHHHHHhhh---c
Confidence 56788888888876533211111 1223345566678888753 2899999999999999988642110 0
Q ss_pred cCCCCCCcEEEEcCCC-chHHHHHHHhcC------------ceeEEEeccCCccccCHHHHHHHhh-hCCeEEEEeeCCC
Q 014163 148 QGKPYDKPNIVTGANV-QVCWEKFARYFE------------VELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGST 213 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~-h~s~~~~~~~~G------------~~v~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~ 213 (429)
+|.+.++++|++.++. |.+...++...| .++..+|. .|+++|+++++ +++++|+++..++
T Consensus 161 ~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~------~d~~~le~~l~~~~~~~vi~ep~~~ 234 (439)
T 2oat_A 161 KGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY------NDLPALERALQDPNVAAFMVEPIQG 234 (439)
T ss_dssp TCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS------SCHHHHHHHTTSTTEEEEEECSSBT
T ss_pred cCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC------CCHHHHHHHhCCCCEEEEEEECCCC
Confidence 1111123567776655 455555555544 34555543 38999999995 5677776665556
Q ss_pred cccccc----ChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCC-CCeEE
Q 014163 214 LTGEFE----DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVY-AGVGW 287 (429)
Q Consensus 214 ~tG~~~----~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p-~g~g~ 287 (429)
++|.+. ++++|.++|++| |+++|+|++|.++.. .......+. +. ..|.+++ .|++.++ .++|+
T Consensus 235 ~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~g~--~g~~~~~~~~~~-~~Di~t~--sK~l~~G~~~~G~ 303 (439)
T 2oat_A 235 EAGVVVPDPGYLMGVRELCTRH------QVLFIADEIQTGLAR--TGRWLAVDYENV-RPDIVLL--GKALSGGLYPVSA 303 (439)
T ss_dssp TTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEEEE--CGGGGTTSSCCEE
T ss_pred CCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CCcchhHHHhCC-CCcEEEe--cccccCCCCCeEE
Confidence 789765 799999999999 999999999976321 111111111 22 3676644 4877766 67999
Q ss_pred EEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Q 014163 288 VVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEIL 367 (429)
Q Consensus 288 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 367 (429)
++.+++ +.+.+.. .. . ..++ +.+.....+..++++.+..+ +..++..++++++.+.|++++ +.++
T Consensus 304 v~~~~~--~~~~l~~--~~---~--~~t~--~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~-~~~~ 368 (439)
T 2oat_A 304 VLCDDD--IMLTIKP--GE---H--GSTY--GGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLP-SDVV 368 (439)
T ss_dssp EEECHH--HHTTSCT--TS---S--CCSS--TTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSC-TTTE
T ss_pred EEECHH--HHhccCC--CC---c--ccCC--CcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 888642 2122111 00 0 1111 11223344455555554332 467788889999999998863 3221
Q ss_pred eC-CCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 368 SK-DVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 368 ~~-~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.. +....++.+.+......+..++.+.|. ++|+.+.. .+...+|+++.
T Consensus 369 ~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~----~~Gv~v~~------~~~~~iRi~~~ 417 (439)
T 2oat_A 369 TAVRGKGLLNAIVIKETKDWDAWKVCLRLR----DNGLLAKP------THGDIIRFAPP 417 (439)
T ss_dssp EEEEEETTEEEEEECCCSSCCHHHHHHHHH----HTTEECCB------SSSSEEEECCC
T ss_pred EEEEeeeeEEEEEEecCccHHHHHHHHHHH----HCCeEEec------CCCCEEEEECc
Confidence 11 113466777775321134667777777 89998764 13457999764
No 207
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=1.8e-17 Score=163.23 Aligned_cols=294 Identities=11% Similarity=-0.089 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCC-CCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-VADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
+|.+.+++.+.+..... +...........++.+.+++++|.+ . ..+.+|+||++|+..++++++..
T Consensus 61 ~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~-----~~v~~~~gg~ea~~~ai~~~~~~------- 127 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAH-AAANDFYNIPQLELAKKLVTYSPGNFQ-----KKVFFSNSGTEAIEASIKVVKNT------- 127 (419)
T ss_dssp CHHHHHHHHHHHTTSCC-CSCSCSCCHHHHHHHHHHHHHSSCSSC-----EEEEEESSHHHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHHHHhhCcc-ccccccCCHHHHHHHHHHHHhCCCCcC-----CEEEEeCchHHHHHHHHHHHHHh-------
Confidence 57888988888765321 1111112234456777899999986 3 24899999999999999887531
Q ss_pred cCCCCCCcEEEEcCCCch-HHHHHHHhcC-------------ceeEEEeccCCccc----------------cCHHHHH-
Q 014163 148 QGKPYDKPNIVTGANVQV-CWEKFARYFE-------------VELKEVKLEEGYYV----------------MNPVKAV- 196 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~-s~~~~~~~~G-------------~~v~~v~~~~~~~~----------------~d~~~l~- 196 (429)
.+++|++++++++ .+..++...| .+++.+|.+.+ ++ +|+++|+
T Consensus 128 -----~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~g~~~~~~~~~~~~~~~~~l~~ 201 (419)
T 2eo5_A 128 -----GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNP-YRNPWHINGYENPSELVNRVIEFIED 201 (419)
T ss_dssp -----SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCS-SSCTTCCCTTTCHHHHHHHHHHHHHH
T ss_pred -----hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcc-ccccccccccccchhhHHHHHHHHHH
Confidence 1257887776543 4433332221 35777877542 32 4789999
Q ss_pred HHhhh-----CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCC
Q 014163 197 ELVDE-----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPL 267 (429)
Q Consensus 197 ~~i~~-----~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~ 267 (429)
+++++ ++++|+++..++++|.+.+ +++|.++|++| |+++|+|++|.++.. .......+.....
T Consensus 202 ~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~~~g~--~g~~~~~~~~~~~ 273 (419)
T 2eo5_A 202 YIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKY------GILLVDDEVQMGLGR--TGKLFAIENFNTV 273 (419)
T ss_dssp THHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGGTCC
T ss_pred HHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCcc--CcchhhHHhcCCC
Confidence 99873 4555555444456898665 99999999999 999999999986421 1111111111123
Q ss_pred eeEEEEcCcccCCCC-CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHH
Q 014163 268 VKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMEN 346 (429)
Q Consensus 268 ~d~~~~s~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~ 346 (429)
.|.++++ |.+.++ .++|+++.+++ .. .+ . ... ..+ .+.+.....+..++++.+ ++..++
T Consensus 274 ~d~~t~s--K~~~~G~~riG~~~~~~~-~~--~~-~--~~~---~~t----~~~n~~~~~aa~aal~~~-----~~~~~~ 333 (419)
T 2eo5_A 274 PDVITLA--KALGGGIMPIGATIFRKD-LD--FK-P--GMH---SNT----FGGNALACAIGSKVIDIV-----KDLLPH 333 (419)
T ss_dssp CSEEEEC--GGGGTTTSCCEEEEEEGG-GC--CC------------C----CCCCHHHHHHHHHHHHHH-----HHHHHH
T ss_pred CCEEEec--ccccCCccceEEEEEchH-hh--cC-C--ccc---CCC----CCCCHHHHHHHHHHHHHH-----HHHHHH
Confidence 5666544 555567 89999988653 22 21 1 000 001 111222333344444332 237788
Q ss_pred HHHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 347 CMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 347 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
..+++++|.+.|+++ +..+. + ..+++.+.+.+. ..... +.+.|. ++|+.+++. +..++|++++
T Consensus 334 ~~~~~~~l~~~L~~~--~~~~~-~-~g~~~~i~~~~~-~~~~~-~~~~l~----~~Gv~v~~~------~~~~lRis~~ 396 (419)
T 2eo5_A 334 VNEIGKIFAEELQGL--ADDVR-G-IGLAWGLEYNEK-KVRDR-IIGESF----KRGLLLLPA------GRSAIRVIPP 396 (419)
T ss_dssp HHHHHHHHHHHHTTS--SSEEE-E-ETTEEEEECSCH-HHHHH-HHHHHH----HTTEECEEE------TTTEEEECCC
T ss_pred HHHHHHHHHHHHHHh--hhheE-e-eeEEEEEEEecC-ccHHH-HHHHHH----HCCCEEecC------CCCEEEEECC
Confidence 889999999999886 22221 2 456666766321 01122 444444 899998753 1346999754
No 208
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.78 E-value=2.2e-17 Score=163.61 Aligned_cols=306 Identities=9% Similarity=-0.100 Sum_probs=174.9
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+... ..+....+..++..++.++++++++...+ ....+|+||++|+..++.+++...
T Consensus 60 ~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~~~~----~~v~~~~ggsea~~~al~~~~~~~------ 128 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPGEGT----HKIWFGHSGSDANEAAYRAIVKAT------ 128 (439)
T ss_dssp SCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTCTTT----EEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCCCCC----CEEEEeCCHHHHHHHHHHHHHHHh------
Confidence 4677888888777654 22322334456677888999999854321 138999999999999999875421
Q ss_pred cCCCCCCcEEEEcC-CCchHHHHHHHhcCcee--------------EEEeccCCcccc-----CHHHHHHHh----hhCC
Q 014163 148 QGKPYDKPNIVTGA-NVQVCWEKFARYFEVEL--------------KEVKLEEGYYVM-----NPVKAVELV----DENT 203 (429)
Q Consensus 148 ~g~~~~~~~vi~~~-~~h~s~~~~~~~~G~~v--------------~~v~~~~~~~~~-----d~~~l~~~i----~~~~ 203 (429)
+++.|++.+ ..|..+..++...|... ..+|.+.. +.. |+++|++++ .+++
T Consensus 129 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~ 202 (439)
T 3dxv_A 129 -----GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAAVPAGSI 202 (439)
T ss_dssp -----SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHTSCTTCE
T ss_pred -----CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHhcCCCCE
Confidence 124555544 45555555544434322 23333221 112 799999999 4556
Q ss_pred eEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccC
Q 014163 204 ICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG 279 (429)
Q Consensus 204 ~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~ 279 (429)
++|+++.+++++|.+.+ +++|.++|++| ++++|+|++|+++.. .......+......|.+++ .|.+
T Consensus 203 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DE~~~g~g~--~g~~~~~~~~~~~~di~s~--sK~~ 272 (439)
T 3dxv_A 203 GAAFIEPIQSDGGLIVPPDGFLRKFADICRAH------GILVVCDEVKVGLAR--SGRLHCFEHEGFVPDILVL--GKGL 272 (439)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTCTTT--TSSSSGGGGTTCCCSEEEE--CGGG
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--CchhhHHHhcCCCCCEEEE--cchh
Confidence 78888888888899888 99999999999 999999999986321 1111111111113566654 3777
Q ss_pred CCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Q 014163 280 LVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359 (429)
Q Consensus 280 ~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~ 359 (429)
.+++++|+++.+.+ .. +.+... ....++ .+.....+..++++.+.. ++..++.+++++++++.|.
T Consensus 273 ~~G~riG~~~~~~~-~~-~~~~~~-------~~~~t~---~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~ 337 (439)
T 3dxv_A 273 GGGLPLSAVIAPAE-IL-DCASAF-------AMQTLH---GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLS 337 (439)
T ss_dssp GTTSCCEEEEEEHH-HH-TSCSSS-------SCCTTT---TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEECHH-HH-hhhcCC-------CcCCCc---ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 67778999887542 21 111110 000111 111222333334443322 3445566666666666665
Q ss_pred h----CCCeEEeeCCCCceEEEEEecCC------CCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 360 K----TGRFEILSKDVGVPLVAFSLKDS------SAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 360 ~----~~~~~~~~~~~~~~~v~f~~~~~------~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+ .+.+..+.. ...++.+.+... ...+..++.+.|. ++|+.+.... .....+|++++
T Consensus 338 ~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~v~~~~----~~~~~iRi~~~ 403 (439)
T 3dxv_A 338 ELAKRHPLIGDIRG--RGLACGMELVCDRQSREPARAETAKLIYRAY----QLGLVVYYVG----MNGNVLEFTPP 403 (439)
T ss_dssp HHHHHCTTEEEEEE--ETTEEEEEEEEETTTTEECHHHHHHHHHHHH----HHTEECEEES----TTSCEEEECCC
T ss_pred HHHHhCCCeEEEEE--EEEEEEEEEecCccccCCCHHHHHHHHHHHH----HCCcEEeecC----CCCCEEEEECC
Confidence 4 454444322 355666655311 1122344555555 8899886531 22357999753
No 209
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.78 E-value=1.3e-16 Score=158.69 Aligned_cols=321 Identities=10% Similarity=-0.032 Sum_probs=177.3
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+..... .......+...++.++++++++.+. . +.+|+||++|+..++++++..+..
T Consensus 66 ~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~~~-----~-v~~~~ggseA~~~al~~~~~~~~~---- 133 (452)
T 3n5m_A 66 GRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGGEY-----V-IFFSNSGSEANETAFKIARQYYAQ---- 133 (452)
T ss_dssp CCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTSCE-----E-EEEESSHHHHHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCCCc-----e-EEEeCchHHHHHHHHHHHHHHHHh----
Confidence 357888988888765433 1222344566688889999988754 2 899999999999999998753210
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhc-Cc------------eeEEEeccCC-c----------cccCHHHHHHHhh---
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYF-EV------------ELKEVKLEEG-Y----------YVMNPVKAVELVD--- 200 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~-G~------------~v~~v~~~~~-~----------~~~d~~~l~~~i~--- 200 (429)
.|.+ +++.|++.+++|+.+...+..+ |. ++..++.... . ...++++|+++++
T Consensus 134 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 212 (452)
T 3n5m_A 134 KGEP-HRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL 212 (452)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred cCCC-CCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence 1110 2357777776655433222222 21 2334443111 0 1112899999998
Q ss_pred -hCCeEEEEeeC-CCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEc
Q 014163 201 -ENTICVAAILG-STLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVS 274 (429)
Q Consensus 201 -~~~~~v~~~~~-~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s 274 (429)
+++++|+++.+ +| +|.+.+ +++|.++|++| |+++|+|++|.++.. ..........-...|.++++
T Consensus 213 ~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~~~~~~~~~~di~t~s 283 (452)
T 3n5m_A 213 SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH------GALLISDEVICGFGR--TGKAFGFMNYDVKPDIITMA 283 (452)
T ss_dssp GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTCCCSEEEEC
T ss_pred CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc------CCEEEEecchhCCCc--ccccchhhhcCCCCCEEeec
Confidence 45667777766 68 998876 99999999999 999999999986421 11111111111136777654
Q ss_pred CcccCCCC-CCeEEEEEeCCCCccccccc---ccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHH
Q 014163 275 GHKYGLVY-AGVGWVVWRTKDDLPDELVF---HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGN 350 (429)
Q Consensus 275 ~hK~~~~p-~g~g~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~ 350 (429)
|.+.++ +++|+++.+++ +.+.+.. ...+..+ .+ .+.+.....+..++++.+.. ++..++..++
T Consensus 284 --K~l~~G~~~ig~~~~~~~--i~~~~~~~~~~~~~~~~----~t--~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~ 350 (452)
T 3n5m_A 284 --KGITSAYLPLSATAVKRE--IYEAFKGKGEYEFFRHI----NT--FGGNPAACALALKNLEIIEN---ENLIERSAQM 350 (452)
T ss_dssp --GGGGTTSSCCEEEEEEHH--HHGGGCSSSTTCSCCCC----CS--STTCHHHHHHHHHHHHHHHH---TTHHHHHHHH
T ss_pred --ccccCCCcceEEEEECHH--HHHHHhhccCCCCcccc----CC--CCCCHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence 766667 88999887542 2222211 0111110 01 11111233333344443323 3345555566
Q ss_pred HHHHHHHHHh----CCCeEEeeCCCCceEEEEEecCCC-CCC--HHHHHHHHHHHHhccCceecccCCCCCCCceEEEEE
Q 014163 351 ARALREGLEK----TGRFEILSKDVGVPLVAFSLKDSS-AHT--VFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVI 423 (429)
Q Consensus 351 ~~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~-~~~--~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~ 423 (429)
.+++++.|.+ ++.+..+.. ...++.+.+.... ... ..+....+.+++.++|+.+.+.......+..++|++
T Consensus 351 ~~~l~~~L~~~~~~~~~~~~~~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~ 428 (452)
T 3n5m_A 351 GSLLLEQLKEEIGEHPLVGDIRG--KGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLA 428 (452)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEE--SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEE--EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEE
Confidence 6666666654 454444332 3344555542210 000 012223344444499999876532223345779996
Q ss_pred ec
Q 014163 424 SH 425 (429)
Q Consensus 424 ~~ 425 (429)
.+
T Consensus 429 ~~ 430 (452)
T 3n5m_A 429 PP 430 (452)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 210
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.76 E-value=4.5e-17 Score=161.85 Aligned_cols=315 Identities=13% Similarity=0.012 Sum_probs=180.9
Q ss_pred ChHHHHHHHHHHcCcCCCCCccC-hhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 68 MEPECDKLVMASINKNYVDMDEY-PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
.+|.+.+++.+.+..... ... ....++..++.+.++++++.+. ..+.+|+||++|+..++++++....
T Consensus 67 ~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~~-----~~v~~~~ggsea~~~al~~~~~~~~---- 135 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTLDY--SPGFQYGHPLSFQLAEKITDLTPGNL-----NHVFFTDSGSECALTAVKMVRAYWR---- 135 (449)
T ss_dssp SCHHHHHHHHHHTTTCSC--CCSSSCCCHHHHHHHHHHHTTSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEcCcHHHHHHHHHHHHHHHHH----
Confidence 367888998888765321 111 2233445577788899887543 2489999999999999998765221
Q ss_pred hcCCCCCCcEEEEcCCC-chHHHHHHHhcCc------------eeEEEeccCCcc-----ccC--------HHHHHHHhh
Q 014163 147 EQGKPYDKPNIVTGANV-QVCWEKFARYFEV------------ELKEVKLEEGYY-----VMN--------PVKAVELVD 200 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~~-h~s~~~~~~~~G~------------~v~~v~~~~~~~-----~~d--------~~~l~~~i~ 200 (429)
..|.+ ++++|++.+++ |.....++...|. ++..++++.. + .+| +++|+++++
T Consensus 136 ~~g~~-~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~d~~~~~~~~~~~le~~l~ 213 (449)
T 3a8u_X 136 LKGQA-TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLL-ASNAYSRGMPKEGGIALADELLKLIE 213 (449)
T ss_dssp HTTCT-TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCC-GGGTTCSSSCSSSHHHHHHHHHHHHH
T ss_pred hcCCC-CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcc-ccCccccCChHHHHHHHHHHHHHHHH
Confidence 01111 12567775555 4444444444432 3556665321 1 146 999999997
Q ss_pred ----hCCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEE
Q 014163 201 ----ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSI 271 (429)
Q Consensus 201 ----~~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~ 271 (429)
+++++|+++..++++|.+.+ +++|.++|++| |+++|+|++|.++.. .......+. +. ..|.+
T Consensus 214 ~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~------~~~li~Dev~~~~g~--~g~~~~~~~~~~-~~di~ 284 (449)
T 3a8u_X 214 LHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH------NILLVFDEVITGFGR--TGSMFGADSFGV-TPDLM 284 (449)
T ss_dssp HHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEE
T ss_pred hcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh------CCEEEEeccccCccc--cCcchhhhhcCC-CCCEE
Confidence 35566666555567998888 99999999999 999999999965321 111111111 21 35766
Q ss_pred EEcCcccCCCC-CCeEEEEEeCCCCcccccccccC--CCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHH
Q 014163 272 NVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHIN--YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM 348 (429)
Q Consensus 272 ~~s~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~ 348 (429)
+++ |++.++ .++|++++++ +. .+.+..... .........+ .+.+.....+..++++.+.. ++..++..
T Consensus 285 s~s--K~l~~G~~~~G~~~~~~-~~-~~~l~~~~~~~~~~~~~~~~t--~~~~~~~~aa~~aal~~~~~---~~~~~~~~ 355 (449)
T 3a8u_X 285 CIA--KQVTNGAIPMGAVIAST-EI-YQTFMNQPTPEYAVEFPHGYT--YSAHPVACAAGLAALCLLQK---ENLVQSVA 355 (449)
T ss_dssp EEC--GGGGTTSSCCEEEEEEH-HH-HHHHHTCSSCTTSCSSCCCCT--TTTCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred EEc--ccccCCCCceEEEEECH-HH-HHHhhccCcccccccccccCC--CcccHHHHHHHHHHHHHHHh---cCHHHHHH
Confidence 554 776654 5689988764 22 222211100 0000000001 11222333344455554433 24667788
Q ss_pred HHHHHHHHHHHhCCCeEEeeC-CCCceEEEEEecCCCC-C--CHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 349 GNARALREGLEKTGRFEILSK-DVGVPLVAFSLKDSSA-H--TVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 349 ~~~~~l~~~L~~~~~~~~~~~-~~~~~~v~f~~~~~~~-~--~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
++++++++.|++++.+..+.. +....++.+.+..... . +..++.+.|. ++|+.++.. + ..+|++.
T Consensus 356 ~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~----~~Gv~v~~~------g-~~iRis~ 424 (449)
T 3a8u_X 356 EVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALW----KAGFYVRFG------G-DTLQFGP 424 (449)
T ss_dssp HHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHH----HHTEECEEE------T-TEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHH----HCCcEEecC------C-CEEEEEC
Confidence 888999999987543221111 1145677777753211 1 1235666666 889997652 2 5699984
No 211
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.76 E-value=1.6e-16 Score=158.48 Aligned_cols=317 Identities=13% Similarity=-0.047 Sum_probs=176.6
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+......+.......+...++.++++++++.+. ..+.+|+||++|+..++++++.....
T Consensus 68 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~gGseA~~~al~~~~~~~~~---- 138 (460)
T 3gju_A 68 GRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGM-----SRVYFGLSGSDANETNIKLIWYYNNV---- 138 (460)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 357788888777655332222233344566678888999876543 23899999999999999998764311
Q ss_pred cCCCCCCcEEEEcCCCchHHH-HHHHhcC------------ceeEEEeccC----CccccC--------HHHHHHHhh--
Q 014163 148 QGKPYDKPNIVTGANVQVCWE-KFARYFE------------VELKEVKLEE----GYYVMN--------PVKAVELVD-- 200 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~-~~~~~~G------------~~v~~v~~~~----~~~~~d--------~~~l~~~i~-- 200 (429)
.|.+ ++++|++.+++|+.+. .+....| .++..+|... ++..++ +++|+++++
T Consensus 139 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~ 217 (460)
T 3gju_A 139 LGRP-EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE 217 (460)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence 1211 2357777666554322 2222212 2355666432 111123 689999887
Q ss_pred --hCCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEE
Q 014163 201 --ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINV 273 (429)
Q Consensus 201 --~~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~ 273 (429)
+++.+|++..+++++|.+.+ +++|.++|++| |+++|+|++|.++.- ........ ++. ..|.+++
T Consensus 218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~g~~~~~~~~~~-~pdi~t~ 288 (460)
T 3gju_A 218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY------DVLLVADEVVTGFGR--LGTMFGSDHYGI-KPDLITI 288 (460)
T ss_dssp CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHHTC-CCSEEEE
T ss_pred CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCC-CCCeeee
Confidence 34567777766667777655 99999999999 999999999986421 11111111 122 3577766
Q ss_pred cCcccCCCC-CCeEEEEEeCCCCcccccccc----cCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHH-HHHHHHHH
Q 014163 274 SGHKYGLVY-AGVGWVVWRTKDDLPDELVFH----INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG-YKNIMENC 347 (429)
Q Consensus 274 s~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g-~~~~~~~~ 347 (429)
+ |.+.++ +++|+++.+++ +.+.+... ..+.... + .+-+.....+..++++.+..+. +++..+..
T Consensus 289 s--K~l~gG~~~lg~v~~~~~--i~~~~~~~~~~~~~~~~~~--t----~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~ 358 (460)
T 3gju_A 289 A--KGLTSAYAPLSGVIVADR--VWQVLVQGSDKLGSLGHGW--T----YSAHPICVAAGVANLELIDEMDLVTNAGETG 358 (460)
T ss_dssp C--GGGTTTSSCCEEEEEEHH--HHHHHHHHHHHHCSCSCCC--T----TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred e--hhhcCCCCCeEEEEECHH--HHHHHhcccccccccccCC--C----CCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5 877666 68899887642 22222110 1111110 1 1111123334444555443333 23333333
Q ss_pred HHHHHHHHHHHHhCCCeEEeeCCCCceEEEEEecCCCC---------CCHHHHHHHHHHHHhccCceecccCCCCCCCce
Q 014163 348 MGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSA---------HTVFEISEGLRKKLNRFQVVYPQKLPMSYPWST 418 (429)
Q Consensus 348 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~ 418 (429)
..+++.+.+.+.+.+.+..+.. ...++.+.+..... ....++.+.|. ++|+.+.... ...
T Consensus 359 ~~~~~~l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~v~~~~-----~~~ 427 (460)
T 3gju_A 359 AYFRAELAKAVGGHKNVGEVRG--DGMLAAVEFVADKDDRVFFDASQKIGPQVATALA----ASGVIGRAMP-----QGD 427 (460)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH----HTTEECEECS-----SSC
T ss_pred HHHHHHHHHHHhcCCCeEEEee--eeEEEEEEEccCccccccccchHHHHHHHHHHHH----HCCeEEecCC-----CCC
Confidence 4445555555566665554432 34566676643210 01334455555 8999876531 345
Q ss_pred EEEEEe
Q 014163 419 KLRVIS 424 (429)
Q Consensus 419 ~lRi~~ 424 (429)
++|++.
T Consensus 428 ~iRi~~ 433 (460)
T 3gju_A 428 ILGFAP 433 (460)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 799983
No 212
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.76 E-value=6.6e-17 Score=159.83 Aligned_cols=310 Identities=13% Similarity=-0.044 Sum_probs=176.0
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+.........+ ..+...++.+.+++++|.+. ..+.+|+||++|+..++++++..
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~-----~~v~~~~gg~ea~~~a~~~~~~~------- 125 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKLDHLFSEM--LSRPVVDLATRLANITPPGL-----DRALLLSTGAESNEAAIRMAKLV------- 125 (433)
T ss_dssp TCHHHHHHHHHHHHHCCCCCTTC--CCHHHHHHHHHHHHHSCTTC-----CEEEEESCHHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHhCccccccc--CCHHHHHHHHHHHHhCCCCc-----CEEEEeCchHHHHHHHHHHHHHh-------
Confidence 36778888877765432111112 23445567778899988754 23899999999999999876531
Q ss_pred cCCCCCCcEEEEcCCCch-HHHHHHHhc-----------CceeEEEeccCC-----------ccccCHHHHHHHhhh---
Q 014163 148 QGKPYDKPNIVTGANVQV-CWEKFARYF-----------EVELKEVKLEEG-----------YYVMNPVKAVELVDE--- 201 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~-s~~~~~~~~-----------G~~v~~v~~~~~-----------~~~~d~~~l~~~i~~--- 201 (429)
. +++.|++.+++|+ ....+.... ..+++.++++.. .+.+|+++|++++++
T Consensus 126 ~----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (433)
T 1zod_A 126 T----GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 201 (433)
T ss_dssp H----TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCC
T ss_pred h----CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCC
Confidence 1 1246777776543 333222221 124555554311 023579999999984
Q ss_pred -CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCc
Q 014163 202 -NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGH 276 (429)
Q Consensus 202 -~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~h 276 (429)
++++|+++..++++|.+.+ +++|.++|++| |+++|+|++|+++.. .......+..-...|.++++
T Consensus 202 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~~~g~--~g~~~~~~~~~~~~di~s~s-- 271 (433)
T 1zod_A 202 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR------GMLLILDEAQTGVGR--TGTMFACQRDGVTPDILTLS-- 271 (433)
T ss_dssp SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTCCCSEEEEC--
T ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--CchHhHHhhcCCCCCEEEec--
Confidence 4555555444577897655 99999999999 999999999986421 11111111111135666554
Q ss_pred ccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Q 014163 277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356 (429)
Q Consensus 277 K~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~ 356 (429)
|.++++.++|+++.++ + +.+.+... .+..+ .+ .+.+.....+..++++.+..+ +..++..++++++.+
T Consensus 272 K~~~~G~~ig~~~~~~-~-~~~~~~~~-~~~~~--~t----~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~ 339 (433)
T 1zod_A 272 KTLGAGLPLAAIVTSA-A-IEERAHEL-GYLFY--TT----HVSDPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRR 339 (433)
T ss_dssp HHHHTTSSCEEEEECH-H-HHHHHHHT-TCCCC--CT----TTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHH
T ss_pred ccccCCCCeeEEEEhH-H-HHHhhccC-CCCCC--CC----CCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 7666678899998764 2 22222111 11100 01 111223333444555544333 345667777888888
Q ss_pred HHHhC----CCeEEeeCCCCceEEEEEecCCC------CCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 357 GLEKT----GRFEILSKDVGVPLVAFSLKDSS------AHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 357 ~L~~~----~~~~~~~~~~~~~~v~f~~~~~~------~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.|+++ +.+..+. + ...++.+.+.... .....++.+.|. ++|+.+..... ......+|++++
T Consensus 340 ~l~~l~~~~~~~~~~~-~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~v~~~~~--~~~~~~lRi~~~ 410 (433)
T 1zod_A 340 GLLDLMERFDCIGDVR-G-RGLLLGVEIVKDRRTKEPADGLGAKITRECM----NLGLSMNIVQL--PGMGGVFRIAPP 410 (433)
T ss_dssp HHHHHHHHCTTEEEEE-E-ETTEEEEEEEEETTTTEECTTHHHHHHHHHH----HTTEECCEECC--TTSCCEEEECCC
T ss_pred HHHHHHHhCCCeEEEE-E-EEEEEEEEEecCccccCCChHHHHHHHHHHH----HCCCeEeccCC--CCCCCEEEEECC
Confidence 77764 5343332 2 3456666654210 122455666665 89998875421 112367999753
No 213
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.75 E-value=2e-17 Score=167.96 Aligned_cols=214 Identities=12% Similarity=0.039 Sum_probs=145.0
Q ss_pred ccccccccCCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHH-HHHHHhhCCC--CCCCCCCCceEeCCchHHHHHHH
Q 014163 58 LNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCV-NMIAHLFNTP--VADDKTAVGVGTVGSSEAIMLAG 134 (429)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~-~~la~l~g~~--~~~~~~~~~~~t~g~t~a~~~al 134 (429)
++|+.+.+..+++.+.+.+...+.. ..|....+..++.+++. .++.+.++.. .... ..+++|+|+++++.+++
T Consensus 107 i~l~~g~~~~~~~~~~~al~~~~~~--~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~--~~I~~t~G~~eal~~~~ 182 (546)
T 2zy4_A 107 LSYVRDQLGLDPAAFLHEMVDGILG--CNYPVPPRMLNISEKIVRQYIIREMGADAIPSES--VNLFAVEGGTAAMAYIF 182 (546)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGG--EEEEEEEHHHHHHHHHH
T ss_pred hecccCCCCCCChHHHHHHHHhhhc--CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCc--ceEEEECCHHHHHHHHH
Confidence 4455566666666665555555432 23444445556665644 4555554431 1011 24889999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhc--CceeEEEeccCC-ccccCHHHHHHHhhhCCeEEEEeeC
Q 014163 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF--EVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAILG 211 (429)
Q Consensus 135 ~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~--G~~v~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~ 211 (429)
.++..+.. -..++.|++++++|+.+..++... |++++.+|++++ ++.+|+++|++++++++++|+++++
T Consensus 183 ~~l~~~~l--------~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p 254 (546)
T 2zy4_A 183 ESLKLNGL--------LKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNP 254 (546)
T ss_dssp HHHHHTTS--------SCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESS
T ss_pred HHhhhhhc--------CCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECC
Confidence 87531100 002368999999999998886654 677888888643 3789999999998888999999999
Q ss_pred CCccccccC---hHHHHHHH--HHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccC-CCCCCe
Q 014163 212 STLTGEFED---VKLLHDLL--TKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG-LVYAGV 285 (429)
Q Consensus 212 ~~~tG~~~~---l~~I~~la--~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~-~~p~g~ 285 (429)
+||||.+.+ +++|.++| +++ ++++++|++|+.+.. ....-... ..+.+.+..|.+|++ ++++++
T Consensus 255 ~NPtG~~~~~~~l~~l~~~a~~~~~------~~~ii~De~y~~~~~---~~~s~~~~-~~~~~i~~~S~SK~~g~~GlRi 324 (546)
T 2zy4_A 255 SNPPSVKMDQRSLERVRNIVAEHRP------DLMILTDDVYGTFAD---DFQSLFAI-CPENTLLVYSFSKYFGATGWRL 324 (546)
T ss_dssp CSSSCBCCCHHHHHHHHHHHHHTCT------TCEEEEECTTGGGST---TCCCHHHH-CGGGEEEEEESTTTTTCGGGCE
T ss_pred CCCCCccCCHHHHHHHHHHHHhccC------CcEEEEeCcchhhcc---cCcCHHHh-CCCCEEEEEeCccccCCCCcce
Confidence 999999865 66678888 678 999999999987532 11000011 123567777889977 477889
Q ss_pred EEEEEeCC
Q 014163 286 GWVVWRTK 293 (429)
Q Consensus 286 g~l~~~~~ 293 (429)
|+++..++
T Consensus 325 G~~~~~~~ 332 (546)
T 2zy4_A 325 GVVAAHQQ 332 (546)
T ss_dssp EEEEEESS
T ss_pred EEEEECCH
Confidence 99988654
No 214
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.74 E-value=1.6e-16 Score=158.37 Aligned_cols=311 Identities=13% Similarity=0.018 Sum_probs=173.4
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.++.....+.......+...++.++++++++.+.+ .+.+|+||++|+..++++++.....
T Consensus 67 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-----~v~~~~ggseA~~~al~~~~~~~~~---- 137 (459)
T 4a6r_A 67 GRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFD-----RVFYTNSGSESVDTMIRMVRRYWDV---- 137 (459)
T ss_dssp CCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCC-----EEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCC-----EEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 3578888888877654322322233455666888899999876542 3899999999999999998864321
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhcC-------------ceeEEEeccC----CccccC--------HHHHHHHhhh-
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYFE-------------VELKEVKLEE----GYYVMN--------PVKAVELVDE- 201 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G-------------~~v~~v~~~~----~~~~~d--------~~~l~~~i~~- 201 (429)
.|.+ +++.|++.+++|+.+...+..++ .++..++... +.+ +| +++|++++++
T Consensus 138 ~g~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 138 QGKP-EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence 1211 23577776666554332222221 1344555322 112 44 8899998873
Q ss_pred ---CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEE
Q 014163 202 ---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINV 273 (429)
Q Consensus 202 ---~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~ 273 (429)
++.+|++...++++|.+.+ +++|.++|++| |+++|+|++|.++.. ........ ++. ..|.+++
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~gr--~G~~~~~~~~~~-~pdi~t~ 286 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY------DVLLVADEVICGFGR--TGEWFGHQHFGF-QPDLFTA 286 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSHHHHHTC-CCSEEEE
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCCCc--ccccchHhhcCC-CCCeeeh
Confidence 4455555555556677766 99999999999 999999999986421 11111111 122 3677776
Q ss_pred cCcccCCCC-CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHH-HHH
Q 014163 274 SGHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM-GNA 351 (429)
Q Consensus 274 s~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~-~~~ 351 (429)
+ |.+.++ +++|+++.++ + +.+.+.....+.. ..+ .+-+.....+..++++.+..+ +..++.+ ++.
T Consensus 287 s--K~l~gg~~~lg~v~~~~-~-i~~~~~~~~~~~~----~~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~ 353 (459)
T 4a6r_A 287 A--KGLSSGYLPIGAVFVGK-R-VAEGLIAGGDFNH----GFT--YSGHPVCAAVAHANVAALRDE---GIVQRVKDDIG 353 (459)
T ss_dssp C--GGGGTTSSCCEEEEECH-H-HHHHHHHHCTTHH----HHH--HCSCHHHHHHHHHHHHHHHHT---CHHHHHHHTHH
T ss_pred h--hhhcCCCCCccceeeCH-H-HHHHhhcCCCccc----CCC--CCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHH
Confidence 5 766555 7889988753 2 2222211000000 001 111112333344445443333 3344444 444
Q ss_pred HHHHHH----HHhCCCeEEeeCCCCceEEEEEecCCCC---------CCHHHHHHHHHHHHhccCceecccCCCCCCCce
Q 014163 352 RALREG----LEKTGRFEILSKDVGVPLVAFSLKDSSA---------HTVFEISEGLRKKLNRFQVVYPQKLPMSYPWST 418 (429)
Q Consensus 352 ~~l~~~----L~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~ 418 (429)
+++++. |.+.+.+..+.. ...++.|.+..... ....++.+.|. ++|+.+.+. + .
T Consensus 354 ~~~~~~l~~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~v~~~------g-~ 420 (459)
T 4a6r_A 354 PYMQKRWRETFSRFEHVDDVRG--VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF----RNNLIMRAC------G-D 420 (459)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEE--ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHH----HTTEECEEE------T-T
T ss_pred HHHHHHHHHHHhcCCCeEEEEE--EEEEEEEEEecCccccccccchHHHHHHHHHHHH----HCCeEEecC------C-C
Confidence 444444 455554544432 35566676643110 00334455555 899998652 1 5
Q ss_pred EEEEEe
Q 014163 419 KLRVIS 424 (429)
Q Consensus 419 ~lRi~~ 424 (429)
++|++.
T Consensus 421 ~iRi~~ 426 (459)
T 4a6r_A 421 HIVSAP 426 (459)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 699983
No 215
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.74 E-value=8.6e-18 Score=165.88 Aligned_cols=305 Identities=11% Similarity=0.005 Sum_probs=193.0
Q ss_pred ccccccccCCChH-HHHHHHHHHcC-cCCC--CCccCh-h---hHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHH
Q 014163 58 LNLASFVTTWMEP-ECDKLVMASIN-KNYV--DMDEYP-V---TTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEA 129 (429)
Q Consensus 58 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~-~---~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a 129 (429)
++|..+.+.+++| .+.+++..++. .+.. .|.... + ..++++.+.+++.+..+...+. ..+++|+|++++
T Consensus 59 i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~---~~iv~t~G~~~a 135 (427)
T 2hox_A 59 ADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKD---RYIVFGVGVTQL 135 (427)
T ss_dssp EECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTT---CEEEEESHHHHH
T ss_pred EEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCC---CEEEEeCCHHHH
Confidence 4566666655443 46677777763 2222 254444 5 7889989888887754432211 248999999999
Q ss_pred HHHHHHHH--------HHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhh
Q 014163 130 IMLAGLAF--------KRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDE 201 (429)
Q Consensus 130 ~~~al~a~--------~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~ 201 (429)
+.+++.++ .+ .++.|+++.++|..+...++..|++++. +.+|+++|++++++
T Consensus 136 l~~~~~~l~~~~~~~~~~-------------~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~-------~~~d~~~l~~~~~~ 195 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDA-------------PESKVVAHAPFYPVFREQTKYFDKKGYV-------WAGNAANYVNVSNP 195 (427)
T ss_dssp HHHHHHHHSCCTTTCTTS-------------CCEEEEECSSCCHHHHHHHHHSCBTTEE-------EEEEGGGGTTCSCG
T ss_pred HHHHHHHHhhccccccCC-------------CCCEEEEeCCCcccHHHHHHHcCCeeee-------ecCCHHHHHHhhcC
Confidence 99998887 33 2368999999999999999999988752 45788889988888
Q ss_pred CCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccccCCCCeeEEEEcCcccCC-
Q 014163 202 NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGL- 280 (429)
Q Consensus 202 ~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~hK~~~- 280 (429)
++++|++++|+||||.+.+ + ++ + ++..++|+++.....++ ..+. .+.+.+..|.+|.++
T Consensus 196 ~~k~v~l~~p~NPtG~~~~-~----~l--~------~~~~i~d~~~~~~~~s~------~~~~-~~~~i~~~S~SK~~g~ 255 (427)
T 2hox_A 196 EQYIEMVTSPNNPEGLLRH-A----VI--K------GCKSIYDMVYYWPHYTP------IKYK-ADEDILLFTMSKFTGH 255 (427)
T ss_dssp GGEEEEEESSCTTTCCCCC-C----SS--T------TCEEEEECTTCSTTTSC------CCSC-BCCSEEEEEHHHHTSC
T ss_pred CceEEEEcCCCCCcccccH-H----HH--c------CCCEEEeecccCCCCCc------cccC-CCceEEEEeChhcCCC
Confidence 8999999999999999988 4 23 3 55788888774210000 1111 246888889999764
Q ss_pred CCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCH-------------HHHHHHHHHH
Q 014163 281 VYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGF-------------EGYKNIMENC 347 (429)
Q Consensus 281 ~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~-------------~g~~~~~~~~ 347 (429)
++.++|++++++++.. +.+.....+... + ...+.+.++...+.. +-+++..++.
T Consensus 256 ~G~RiG~~~~~~~~l~-~~l~~~~~~~~~--------~----~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (427)
T 2hox_A 256 SGSRFGWALIKDESVY-NNLLNYMTKNTE--------G----TPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKL 322 (427)
T ss_dssp GGGCCEEEEECCHHHH-HHHHHHHHHHTS--------S----CCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHH
T ss_pred CCceEEEEEECCHHHH-HHHHHHHHhcCC--------C----CCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHH
Confidence 6678999988544332 222111111100 1 122223333333321 2244566778
Q ss_pred HHHHHHHHHHHHhCCCeEE--ee-----------CCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCC
Q 014163 348 MGNARALREGLEKTGRFEI--LS-----------KDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSY 414 (429)
Q Consensus 348 ~~~~~~l~~~L~~~~~~~~--~~-----------~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~ 414 (429)
.++++++.+.|++++++.+ +. .+....++.+++.. +..++.+.|. .++|+.+++......
T Consensus 323 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~----~~~~~~~~ll---~~~gI~v~pg~~f~~ 395 (427)
T 2hox_A 323 RERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW----EEDKDCYQTF---QNGRINTQNGVGFEA 395 (427)
T ss_dssp HHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS----GGGCSHHHHH---HHTTEECEEGGGGTS
T ss_pred HHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC----cHHHHHHHHH---HHCCEEEcCCCccCC
Confidence 8899999999999877765 21 12123445556642 2334555543 178999876511112
Q ss_pred CCceEEEEEecc
Q 014163 415 PWSTKLRVISHL 426 (429)
Q Consensus 415 ~~~~~lRi~~~~ 426 (429)
+..++|+|+++
T Consensus 396 -~~~~~Ris~~~ 406 (427)
T 2hox_A 396 -SSRYVRLSLIK 406 (427)
T ss_dssp -CTTEEEEECSS
T ss_pred -CCCEEEEEecC
Confidence 45679999975
No 216
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.74 E-value=1.8e-16 Score=157.67 Aligned_cols=311 Identities=8% Similarity=-0.032 Sum_probs=170.8
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.++... ++.......+...++.++++++++.+.. ....+|+||+||+..+++.++..
T Consensus 81 ~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~----~~v~~~~sGseA~~~alk~a~~~------- 148 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFT-HTCFMVTPYEQYVQVAELLNALTPGDHD----KRTALFNSGAEAVENAIKVARLA------- 148 (453)
T ss_dssp TCHHHHHHHHHHHHHCS-CCTTTTSCCHHHHHHHHHHHHHSSCSSC----EEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHhcc-ccccCcCCCHHHHHHHHHHHHhCCCCCC----cEEEEeCcHHHHHHHHHHHHHHh-------
Confidence 36778888877775532 2222223445566788889998874321 23899999999999999887652
Q ss_pred cCCCCCCcEEEEcCCCchHH-HHHHHhcC-------------ceeEEEeccC---C--------ccccCHHHHHHHhhhC
Q 014163 148 QGKPYDKPNIVTGANVQVCW-EKFARYFE-------------VELKEVKLEE---G--------YYVMNPVKAVELVDEN 202 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~-~~~~~~~G-------------~~v~~v~~~~---~--------~~~~d~~~l~~~i~~~ 202 (429)
. +++.|++.+++|+.+ ..+....| ..+..+|... + .+..+++.|++.+..+
T Consensus 149 ~----g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~ 224 (453)
T 4ffc_A 149 T----GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQ 224 (453)
T ss_dssp H----CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred c----CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCC
Confidence 1 235677766665432 22222211 1456666541 1 1122256777777666
Q ss_pred CeEEEEeeCCCccc-cccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCc
Q 014163 203 TICVAAILGSTLTG-EFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGH 276 (429)
Q Consensus 203 ~~~v~~~~~~~~tG-~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~h 276 (429)
+.+++++.|.+++| .+.+ +++|.++|++| |+++|+|++|.++.. .......+. +. ..|.++++
T Consensus 225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------~~llI~DEv~~g~g~--~g~~~a~~~~~~-~pdi~t~s-- 293 (453)
T 4ffc_A 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN------GVVFIADEVQTGFAR--TGAWFASEHEGI-VPDIVTMA-- 293 (453)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSEEEEC--
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecCccCCCc--ccccchhhhcCC-CcchHhhh--
Confidence 66677777777664 5544 99999999999 999999999986421 111111111 22 35666655
Q ss_pred ccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Q 014163 277 KYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALRE 356 (429)
Q Consensus 277 K~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~ 356 (429)
|.+.+++++|+++.+++ .. +.+.. .. ...+ .+-+.....+..++++.+..+ +..++.+++.+++++
T Consensus 294 K~~~~G~~~G~~~~~~~-i~-~~~~~---~~--~~~t----~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~ 359 (453)
T 4ffc_A 294 KGIAGGMPLSAVTGRAE-LM-DAVYA---GG--LGGT----YGGNPVTCAAAVAALGVMREL---DLPARARAIEASVTS 359 (453)
T ss_dssp GGGGTTSSCEEEEEEHH-HH-TTSCT---TS--SCCS----SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHH
T ss_pred hhhcCCcCeEEEEECHH-HH-hhhcc---cC--cCCC----CCcCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHH
Confidence 77767789999887542 21 21110 00 0001 111112333334444433232 344445555555555
Q ss_pred HHH----hCCCeEEeeCCCCceEEEEEecCCC-CCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 357 GLE----KTGRFEILSKDVGVPLVAFSLKDSS-AHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 357 ~L~----~~~~~~~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
.|. +.+.+..+.. ...++.+.+.... ..........+.+++.++|+.+.+.. .....+|++++
T Consensus 360 ~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~iRi~~~ 427 (453)
T 4ffc_A 360 RLSALAEEVDIIGEVRG--RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG----TFGNVIRLLPP 427 (453)
T ss_dssp HHHHHHHHCSSEEEEEE--ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC----TTSCEEEECCC
T ss_pred HHHHHHhhCCCeEEEEe--eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC----CCCCEEEEECC
Confidence 554 4554444322 3456666663210 00112233444444559999876531 11246899754
No 217
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.73 E-value=5.7e-16 Score=154.73 Aligned_cols=313 Identities=13% Similarity=0.031 Sum_probs=177.1
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.++.....+.......+...++.++++++++.+. ..+.+++||++|+..++++++.....
T Consensus 72 ~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~-----~~v~~~~sGseA~~~aik~a~~~~~~---- 142 (472)
T 3hmu_A 72 GRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL-----NHVFFAGGGSEANDTNIRMVRTYWQN---- 142 (472)
T ss_dssp CCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCCHHHHHHHHHHHHHHHHHh----
Confidence 468888888887765432222223334555677788889886543 23899999999999999998864321
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhcCc------------eeEEEeccCCccc----cC--------HHHHHHHhh---
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYFEV------------ELKEVKLEEGYYV----MN--------PVKAVELVD--- 200 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~G~------------~v~~v~~~~~~~~----~d--------~~~l~~~i~--- 200 (429)
.|.+ ++..|++.++++..+...+..++. ++..++.... ++ +| +++|+++++
T Consensus 143 ~g~~-~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~-~~~~~~~~~~~~~~~~~~~le~~i~~~~ 220 (472)
T 3hmu_A 143 KGQP-EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNW-WAEGGDMDPEEFGLARARELEEAILELG 220 (472)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCH-HHHCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCC-CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCcc-ccCCcccCHHHHHHHHHHHHHHHHHhcC
Confidence 1211 234677666655432222222221 3455654220 11 33 788999887
Q ss_pred -hCCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEEc
Q 014163 201 -ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVS 274 (429)
Q Consensus 201 -~~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~s 274 (429)
+++.+|++...++++|.+.+ +++|.++|++| |+++|+|++|.++.- ........ +++ ..|.++++
T Consensus 221 ~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~------gillI~DEv~~gfgr--~G~~~a~~~~~v-~pdi~t~s 291 (472)
T 3hmu_A 221 ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY------DILLIADEVICGFGR--TGNWFGTQTMGI-RPHIMTIA 291 (472)
T ss_dssp GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHHTC-CCSEEEEC
T ss_pred CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEccccCCcc--cCccchhHHhCC-CCceeeec
Confidence 34566666666667788776 99999999999 999999999987421 11111111 122 36777765
Q ss_pred CcccCCCC-CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHH-HHHH
Q 014163 275 GHKYGLVY-AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCM-GNAR 352 (429)
Q Consensus 275 ~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~-~~~~ 352 (429)
|.+.++ +++|+++.+++ +.+.+. ...+..+ .+ .+-+.....+..++|+.+.. ++..++.. ++.+
T Consensus 292 --K~l~gg~~plG~v~~~~~--i~~~~~-~~~~~~~----~t--~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~ 357 (472)
T 3hmu_A 292 --KGLSSGYAPIGGSIVCDE--VAHVIG-KDEFNHG----YT--YSGHPVAAAVALENLRILEE---ENILDHVRNVAAP 357 (472)
T ss_dssp --GGGTTTSSCCEEEEEEHH--HHHHHT-TSCBCCC----CT--TTTCHHHHHHHHHHHHHHHH---TTHHHHHHHTHHH
T ss_pred --hhhhcCCcceEEEEECHH--HHHhcc-cCCcccc----CC--CCCCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 776655 68899887542 222221 0000000 01 11111233334444444323 34566666 7777
Q ss_pred HHHHHHHhC---CCeEEeeCCCCceEEEEEecCCCC----C--CHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEE
Q 014163 353 ALREGLEKT---GRFEILSKDVGVPLVAFSLKDSSA----H--TVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVI 423 (429)
Q Consensus 353 ~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~----~--~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~ 423 (429)
++++.|+++ +.+..+.. ...++.|.+..... . ...+....+.++|.++|+.+++. + ..+|++
T Consensus 358 ~l~~~L~~l~~~~~v~~vr~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------g-~~iRi~ 428 (472)
T 3hmu_A 358 YLKEKWEALTDHPLVGEAKI--VGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV------G-DRMIIS 428 (472)
T ss_dssp HHHHHHHGGGGSTTEEEEEE--ETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE------T-TEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEEe--cCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec------C-CEEEEE
Confidence 777777654 43443322 35566777643210 0 00123334444444999987652 2 569998
No 218
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.73 E-value=2.2e-16 Score=157.14 Aligned_cols=309 Identities=11% Similarity=-0.012 Sum_probs=182.1
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+....... ......+...+++++++++++... ..+.+|+||++|+..++++++..+..
T Consensus 92 ~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~~L~e~la~~~~~~~-----~~v~~~~sGseA~~~Alk~a~~~~~~---- 161 (457)
T 3tfu_A 92 GHPALDQALTTQLRVMNHVM-FGGLTHEPAARLAKLLVDITPAGL-----DTVFFSDSGSVSVEVAAKMALQYWRG---- 161 (457)
T ss_dssp TCHHHHHHHHHHHHHCSCCC-SSSEECHHHHHHHHHHHHHSSTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCCCCc-----CEEEEeCcHHHHHHHHHHHHHHHHHh----
Confidence 46778888887775532211 111223445577788999987543 23899999999999999998764321
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhc--------------CceeEEEeccCC-ccccCHHHHHHHhh---hCCeEEEEe
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYF--------------EVELKEVKLEEG-YYVMNPVKAVELVD---ENTICVAAI 209 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~--------------G~~v~~v~~~~~-~~~~d~~~l~~~i~---~~~~~v~~~ 209 (429)
.|.+ ++.+|++.++.|+.....+... ..++..++.... ....|+++|+++++ +++++|++.
T Consensus 162 ~g~~-g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~e 240 (457)
T 3tfu_A 162 RGLP-GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVE 240 (457)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred cCCC-CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 1111 2346776665544322222222 123445554321 12358999999998 567777777
Q ss_pred e-CCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEEEEcCcccCCCC-
Q 014163 210 L-GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSINVSGHKYGLVY- 282 (429)
Q Consensus 210 ~-~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~s~hK~~~~p- 282 (429)
. +++++|.+.+ +++|.++|++| |+++|+|++|.++.- .......+. +. ..|.++++ |.+.++
T Consensus 241 p~~~~~~G~~~~~~~~l~~l~~l~~~~------gillI~DEv~~g~gr--~G~~~a~~~~~~-~pdiit~s--K~l~gG~ 309 (457)
T 3tfu_A 241 PVVQGAGGMRFHDPRYLHDLRDICRRY------EVLLIFDEIATGFGR--TGALFAADHAGV-SPDIMCVG--KALTGGY 309 (457)
T ss_dssp SSEECTTTCEECCTHHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCSEEEEC--GGGGTTS
T ss_pred CCCcCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEcCccCCcc--ccchhHhHhcCC-CceEEEEC--hhhhCCC
Confidence 7 7889998865 99999999999 999999999986421 111111111 22 36777554 766665
Q ss_pred CCeEEEEEeCCCCcccccccc-cC-CCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Q 014163 283 AGVGWVVWRTKDDLPDELVFH-IN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360 (429)
Q Consensus 283 ~g~g~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~ 360 (429)
+++|+++.+++ +.+.+... .. +..+ .+ .+.+.....+..++++.+.. ++..++..++.+++++.|++
T Consensus 310 ~~lG~v~~~~~--i~~~~~~~~~~~~~~~--~t----~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~ 378 (457)
T 3tfu_A 310 LSLAATLCTAD--VAHTISAGAAGALMHG--PT----FMANPLACAVSVASVELLLG---QDWRTRITELAAGLTAGLDT 378 (457)
T ss_dssp SCCEEEEEEHH--HHHHHHHSSSCSCCCC--CT----TTTCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHGG
T ss_pred cceEEEEEcHH--HHHHhhccCCCceeEe--cC----CCcCHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence 58899887642 22222100 00 0100 01 11112233334444544322 34566777888888888876
Q ss_pred C---CCeEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 361 T---GRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 361 ~---~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
+ +.+..+.. ...++.+.+.. ..+..++.+.|. ++|+.+++. ...+|++.
T Consensus 379 l~~~~~v~~vr~--~G~~~~i~l~~--~~~~~~~~~~l~----~~Gv~v~~~-------~~~lRi~p 430 (457)
T 3tfu_A 379 ARALPAVTDVRV--CGAIGVIECDR--PVDLAVATPAAL----DRGVWLRPF-------RNLVYAMP 430 (457)
T ss_dssp GGGSTTEEEEEE--CSSCEEEEESS--CCCHHHHHHHHH----HTTEECCCB-------TTEEEECC
T ss_pred HhcCCCeeeeec--CCeEEEEEECC--cccHHHHHHHHH----HCCeEEEec-------CCEEEEEC
Confidence 5 44443322 35567777753 345677777777 899987642 13689874
No 219
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.73 E-value=4.1e-16 Score=152.65 Aligned_cols=332 Identities=13% Similarity=0.067 Sum_probs=201.5
Q ss_pred HHHHHHHHhhccCCCCCccccccccC------CChHHHHHHHHHHcCcCCC-CCccChhhHHHHHHHHHHHHHhhCCCCC
Q 014163 41 AAYQVINDELMLDGNPRLNLASFVTT------WMEPECDKLVMASINKNYV-DMDEYPVTTELQNRCVNMIAHLFNTPVA 113 (429)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~le~~~~~~la~l~g~~~~ 113 (429)
.++... +.+..+.+|-+||+.|... +..|.+.++....++.+.. .|....|..++.+.+.+++ +|-...
T Consensus 31 ~i~~l~-~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~ 106 (420)
T 4h51_A 31 VIFDLA-KRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVE 106 (420)
T ss_dssp HHHHHH-HHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---C
T ss_pred hHHHHH-HHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCcc
Confidence 444433 3345566677888877421 2336788887777665544 4777889999998876654 443221
Q ss_pred CCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeE-EEec-cCCccccC
Q 014163 114 DDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELK-EVKL-EEGYYVMN 191 (429)
Q Consensus 114 ~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~-~v~~-~~~~~~~d 191 (429)
. +....+.|.|||.|+..++..+...+ ...+++|++++|+|.++....+..|++.+ ..+. +++++.+|
T Consensus 107 ~-~~~~~~qt~ggtga~~~a~~~l~~~~---------~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d 176 (420)
T 4h51_A 107 L-ENLVAVQTLSGTGAVSLGAKLLTRVF---------DAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLN 176 (420)
T ss_dssp G-GGEEEEEEEHHHHHHHHHHHHHTTTS---------CTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEEC
T ss_pred c-cccceeeecCchHHHHHHHHHHHHhc---------CCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCC
Confidence 1 11234568899999988877664321 11236899999999999999999999744 4443 34457889
Q ss_pred HHHHHHHhhh---CCeEEEEeeCCCccccc---cChHHHHHHHHHhhhccCCCccEEeecccccccccccCCCC---cc-
Q 014163 192 PVKAVELVDE---NTICVAAILGSTLTGEF---EDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDL---EW- 261 (429)
Q Consensus 192 ~~~l~~~i~~---~~~~v~~~~~~~~tG~~---~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~---~~- 261 (429)
.+.+.+.+.. ++++++.++++||||.. +.+++|+++|+++ ++++++|.+|.++.. -..+. ..
T Consensus 177 ~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~------~~~~~~D~~Y~~~~~--~~~~~~~~~~~ 248 (420)
T 4h51_A 177 FEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK------HHQVFFDSAYQGYAS--GSLDTDAYAAR 248 (420)
T ss_dssp HHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH------TCEEEEEESCTTTTT--SCHHHHTHHHH
T ss_pred HHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc------CceEeeehhhhhhcc--CCcccchHHHH
Confidence 9998888763 56788889999999998 5688999999999 999999999987532 10000 00
Q ss_pred cc--CCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccc--cCCCCCCCCCceeccCCchhHHHHHHHHHHHcC-
Q 014163 262 DF--RLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFH--INYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLG- 336 (429)
Q Consensus 262 ~~--~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~- 336 (429)
.+ ....+-.+...++.+++.++++|++.+..+... ...... ...... ..+ ... ....+..+...+.
T Consensus 249 ~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~-~~~~~~~~l~~~~r--~~~---s~~---p~~~a~~~~~~l~d 319 (420)
T 4h51_A 249 LFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKT-KRADVKSVMDSLIR--EEY---TCP---PAHGARLAHLILSN 319 (420)
T ss_dssp HHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHH-HHHHHHHHHHHHHH--TTT---SSC---CHHHHHHHHHHHHS
T ss_pred hHHhhCceEEEEeccccccccccCceEEEEecccCHH-HHHHHHHHHHHhhh--ccc---Ccc---hHHHHHHHHHHhcC
Confidence 00 112344555556668889999999987653211 100000 000000 000 011 1112222222221
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhCCC---eEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCcee
Q 014163 337 -------FEGYKNIMENCMGNARALREGLEKTGR---FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVY 406 (429)
Q Consensus 337 -------~~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~ 406 (429)
...++.+.++..++++.|.+.|++.+. +..+.+ +.+.++|. +++.+. .+.|. ++|+.+
T Consensus 320 ~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~--q~GmF~~~-----gls~e~-v~~L~----e~~Vy~ 387 (420)
T 4h51_A 320 NELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVIN--QIGMFSFL-----GLSKAQ-CEYCQ----NHNIFI 387 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH--CCSSEEEC-----CCCHHH-HHHHH----HTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecC--CCceEEec-----CcCHHH-HHHHH----hCCEEE
Confidence 234567778888999999999998752 222222 34555553 334333 45565 888865
Q ss_pred cccCCCCCCCceEEEEEec
Q 014163 407 PQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 407 ~~~~~~~~~~~~~lRi~~~ 425 (429)
.. +. ||+++
T Consensus 388 ~~-------~g---Ris~A 396 (420)
T 4h51_A 388 TV-------SG---RANMA 396 (420)
T ss_dssp CT-------TC---EEEGG
T ss_pred cC-------CC---EEEec
Confidence 32 11 99986
No 220
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.73 E-value=4.2e-16 Score=154.16 Aligned_cols=294 Identities=11% Similarity=-0.003 Sum_probs=159.4
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+..........+ ...++.++++++++ .. ....+|+|||+|+..++++++...
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~~~----~~~~l~~~la~~~~-~~-----~~v~~~~sGsea~~~ai~~a~~~~------ 135 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTPTA----LEVKFAKMLKEAMP-AL-----DKVRFVNSGTEAVMTTIRVARAYT------ 135 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSCCH----HHHHHHHHHHHHCT-TC-----SEEEEESSHHHHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHhCcCCCCCCH----HHHHHHHHHHHhCC-CC-----CEEEEeCchHHHHHHHHHHHHHhh------
Confidence 467888888877755322111222 33455666888776 22 238999999999999999886521
Q ss_pred cCCCCCCcEEEEcCCCchHHHH-HHHhcCceeEEEeccCCccc-------------cCHHHHHHHhhh---CCeEEEEee
Q 014163 148 QGKPYDKPNIVTGANVQVCWEK-FARYFEVELKEVKLEEGYYV-------------MNPVKAVELVDE---NTICVAAIL 210 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~-~~~~~G~~v~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~ 210 (429)
++++|++.+++|+.+.. +....|.....+......+. -|+++|++++++ ++.+|+++.
T Consensus 136 -----~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep 210 (434)
T 3l44_A 136 -----GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEP 210 (434)
T ss_dssp -----CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECS
T ss_pred -----CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcC
Confidence 23578777766554322 22222222111111000000 189999999973 456666666
Q ss_pred CCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEEcCcccCCCCCCe
Q 014163 211 GSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVYAGV 285 (429)
Q Consensus 211 ~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~s~hK~~~~p~g~ 285 (429)
.++++|.+.+ +++|.++|++| |+++|+|++|.++ . ........ ++. ..|.++++ |.+.+++++
T Consensus 211 ~~~~~G~~~~~~~~l~~l~~l~~~~------~illI~DEv~~g~-~--~g~~~~~~~~~~-~~di~t~s--K~~~~G~~i 278 (434)
T 3l44_A 211 IVGNFGIVEPKPGFLEKVNELVHEA------GALVIYDEVITAF-R--FMYGGAQDLLGV-TPDLTALG--KVIGGGLPI 278 (434)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHTT------TCEEEEECTTTTT-T--SSSSCHHHHHTC-CCSEEEEE--GGGGTTSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHc------CCEEEEeccccce-e--ccccHHHHHcCC-CCCeeehh--hhhcCCcCe
Confidence 6667777777 99999999999 9999999999874 1 11111111 122 25666544 666688899
Q ss_pred EEEEEeCCCCccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh----
Q 014163 286 GWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK---- 360 (429)
Q Consensus 286 g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~---- 360 (429)
|+++.++ +.. +.+.... .+.+. + .+.+.....+..++++.+.. ++..++..++++++++.|++
T Consensus 279 G~~~~~~-~i~-~~~~~~~~~~~~~---t----~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 346 (434)
T 3l44_A 279 GAYGGKK-EIM-EQVAPLGPAYQAG---T----MAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAK 346 (434)
T ss_dssp EEEEECH-HHH-TTBTTTSSBCCCC---T----TTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcH-HHH-HhhccCCCcccCC---C----CCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987643 222 2211100 01111 0 11222333344445554433 34555566666666666655
Q ss_pred CCCeEEeeCCCCceEEEEEecCCCCCC-------HHHHHHHHHHHHhccCceecc
Q 014163 361 TGRFEILSKDVGVPLVAFSLKDSSAHT-------VFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 361 ~~~~~~~~~~~~~~~v~f~~~~~~~~~-------~~~~~~~L~~~l~~~G~~~~~ 408 (429)
.+....+. . ...++.+.+......+ .......+.++|.++|+.+..
T Consensus 347 ~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 399 (434)
T 3l44_A 347 HNIDITLN-R-LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAP 399 (434)
T ss_dssp TTCCEEEE-E-ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCS
T ss_pred CCCCEEEE-e-eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEee
Confidence 34222221 2 4566777664321011 112223344444489998764
No 221
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.72 E-value=7.4e-16 Score=153.15 Aligned_cols=311 Identities=13% Similarity=0.064 Sum_probs=167.8
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+.... ++.......+...++.++++++++.+.. ....+|+||++|+..+++.++..
T Consensus 78 ~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~----~~v~~~~sGseA~~~Alk~a~~~------- 145 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDFT-HTCFMVTPYEGYVAVCEQLNRLTPVRGD----KRSALFNSGSEAVENAVKIARSH------- 145 (451)
T ss_dssp TCHHHHHHHHHHHTTCS-CCTTTTSCCHHHHHHHHHHHHHSSCCSS----EEEEEESSHHHHHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHhcc-cccCCccCCHHHHHHHHHHHHhCCcCCC----CEEEEeCcHHHHHHHHHHHHHHh-------
Confidence 36788888888876542 2222223445566788889998864321 23899999999999999988752
Q ss_pred cCCCCCCcEEEEcCCCchHHHH-HHHhcC-------------ceeEEEeccCCc------------cccCHHHHHHHhh-
Q 014163 148 QGKPYDKPNIVTGANVQVCWEK-FARYFE-------------VELKEVKLEEGY------------YVMNPVKAVELVD- 200 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~-~~~~~G-------------~~v~~v~~~~~~------------~~~d~~~l~~~i~- 200 (429)
. +++.|++.+++|+.+.. +....| .++..+|..... ..-+++.+++.++
T Consensus 146 ~----g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 221 (451)
T 3oks_A 146 T----HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDK 221 (451)
T ss_dssp H----CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHH
T ss_pred c----CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHh
Confidence 1 23567776665543222 222211 145666654110 0123555555554
Q ss_pred ---hCCeEEEEeeCCCcc-ccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCeeEE
Q 014163 201 ---ENTICVAAILGSTLT-GEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVKSI 271 (429)
Q Consensus 201 ---~~~~~v~~~~~~~~t-G~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d~~ 271 (429)
.++.+++++.|.+++ |.+.+ +++|.++|++| |+++|+|++|.++.. ......... +. ..|.+
T Consensus 222 ~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~g~--~g~~~~~~~~~~-~pdi~ 292 (451)
T 3oks_A 222 QIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN------DVVFIADEVQTGFAR--TGAMFACEHEGI-DPDLI 292 (451)
T ss_dssp HTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEE
T ss_pred hcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEecccCCCc--cccchhhhhcCC-CCCee
Confidence 345555666666554 55555 99999999999 999999999986421 111111111 21 35777
Q ss_pred EEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Q 014163 272 NVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNA 351 (429)
Q Consensus 272 ~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~ 351 (429)
+++ |.+.+++++|+++.+++ .. +.+... ... .+ .+-+.....+..++++.+..+ ++.++.+++.
T Consensus 293 t~s--K~l~~G~~iG~v~~~~~-~~-~~~~~~--~~~---~t----~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~ 356 (451)
T 3oks_A 293 VTA--KGIAGGLPLSAVTGRAE-IM-DSPHVS--GLG---GT----YGGNPIACAAALATIETIESE---GLVARAQQIE 356 (451)
T ss_dssp EEC--GGGGTTSSCEEEEEEHH-HH-TCSCTT--SBC---CS----SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHH
T ss_pred eeh--hhhhCCcceEEEEECHH-HH-hhhcCC--CcC---CC----CCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHH
Confidence 654 87777889999887542 21 211100 000 01 111112233333444433232 3445555555
Q ss_pred HHHHHHHH----hCCCeEEeeCCCCceEEEEEecCCC-CCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 352 RALREGLE----KTGRFEILSKDVGVPLVAFSLKDSS-AHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 352 ~~l~~~L~----~~~~~~~~~~~~~~~~v~f~~~~~~-~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
+++++.|. +.+.+..+.. ...++.+.+.... ..........+.+++.++|+.+.+... ....+|++++
T Consensus 357 ~~l~~~L~~~~~~~~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~iRi~~~ 429 (451)
T 3oks_A 357 KIMKDRLGRLQAEDDRIGDVRG--RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT----YGNVVRFLPP 429 (451)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE--ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT----TSCEEEECCC
T ss_pred HHHHHHHHHHHhhCCCeEEEEE--eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC----CCCEEEEECC
Confidence 55555554 4454444322 3456666663210 001112233444444499998765311 1246898754
No 222
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.72 E-value=4e-15 Score=147.79 Aligned_cols=310 Identities=12% Similarity=0.047 Sum_probs=168.0
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+..... +.......+...++.++++++++... ..+.+|+||++|+..++++++..+..
T Consensus 61 ~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~al~~~~~~~~~---- 130 (448)
T 3dod_A 61 RKKELDDAIKKQLGKIAH-STLLGMTNVPATQLAETLIDISPKKL-----TRVFYSDSGAEAMEIALKMAFQYWKN---- 130 (448)
T ss_dssp SCHHHHHHHHHHHTTCSC-CCCSSSEEHHHHHHHHHHHHHSCTTE-----EEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCCCC-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 468888888888765422 11222334556678888999886443 23899999999999999998864221
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHHHhc-C------------ceeEEEeccCCcccc-----------CHHHHHHHhh---
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFARYF-E------------VELKEVKLEEGYYVM-----------NPVKAVELVD--- 200 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~~~~-G------------~~v~~v~~~~~~~~~-----------d~~~l~~~i~--- 200 (429)
.|.+ .+++|++.+++|+.....+..+ | .++..+|.... ++. |+++|+++++
T Consensus 131 ~G~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~le~~l~~~~ 208 (448)
T 3dod_A 131 IGKP-EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYV-YRSESGDPDECRDQCLRELAQLLEEHH 208 (448)
T ss_dssp TTCT-TCCEEEEEC-----------------------------CEEECCCCC-TTSSSCCHHHHHHHHHHHHHHHHHHHG
T ss_pred hCCC-CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCcc-ccCCccchhhhhHHHHHHHHHHHHhCC
Confidence 1211 1367888777765433322222 2 12344544321 222 5899999997
Q ss_pred hCCeEEEEeeCC-CccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEEc
Q 014163 201 ENTICVAAILGS-TLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVS 274 (429)
Q Consensus 201 ~~~~~v~~~~~~-~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~s 274 (429)
+++.+|++...+ +++|.+.+ +++|.++|++| |+++|+|++|.++.. ........ ++. ..|.++++
T Consensus 209 ~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~------~~~lI~DEv~~g~g~--~g~~~a~~~~~~-~~di~t~s 279 (448)
T 3dod_A 209 EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY------DVLMIVDEVATGFGR--TGKMFACEHENV-QPDLMAAG 279 (448)
T ss_dssp GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSGGGGGTC-CCSEEEEC
T ss_pred CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--ccchhhhhhcCC-CCCEEEec
Confidence 344555555555 77787655 99999999999 999999999986421 11111111 122 25677655
Q ss_pred CcccCCCCC-CeEEEEEeCCCCccccccc---ccC-CCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHH
Q 014163 275 GHKYGLVYA-GVGWVVWRTKDDLPDELVF---HIN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMG 349 (429)
Q Consensus 275 ~hK~~~~p~-g~g~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~ 349 (429)
|.+.+++ ++|+++.+++ +.+.+.. ... +..+ .+ .+.+.....+..++++.+..+ +..++.++
T Consensus 280 --K~l~~G~~~ig~v~~~~~--~~~~~~~~~~~~~~~~~~----~t--~~~~~~~~aaa~aal~~~~~~---~~~~~~~~ 346 (448)
T 3dod_A 280 --KGITGGYLPIAVTFATED--IYKAFYDDYENLKTFFHG----HS--YTGNQLGCAVALENLALFESE---NIVEQVAE 346 (448)
T ss_dssp --GGGGTTSSCCEEEEEEHH--HHHTTCSCGGGCCCCCCC----CT--TTTCHHHHHHHHHHHHHHHHT---THHHHHHH
T ss_pred --ccccCCcCceEEEEECHH--HHHHhhhccccCCccccc----CC--CCcCHHHHHHHHHHHHHHhcc---cHHHHHHH
Confidence 8777774 8899887642 2122111 000 1100 01 111122333444445443232 34455555
Q ss_pred HHHHHHHHHHh---CCCeEEeeCCCCceEEEEEecCCCCC----C-----HHHHHHHHHHHHhccCceecccCCCCCCCc
Q 014163 350 NARALREGLEK---TGRFEILSKDVGVPLVAFSLKDSSAH----T-----VFEISEGLRKKLNRFQVVYPQKLPMSYPWS 417 (429)
Q Consensus 350 ~~~~l~~~L~~---~~~~~~~~~~~~~~~v~f~~~~~~~~----~-----~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~ 417 (429)
+.+++++.|.+ .+.+..+.. ...++.+.+...... + ..++.+.|. ++|+.+.+. +
T Consensus 347 ~~~~~~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~~~~~------~- 413 (448)
T 3dod_A 347 KSKKLHFLLQDLHALPHVGDIRQ--LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMR----ELGMLTRPL------G- 413 (448)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH----HTTEECCEE------T-
T ss_pred HHHHHHHHHHHHhcCCCeEEEEe--eeEEEEEEEccCcccccccchhhHHHHHHHHHHH----HCCcEEecc------C-
Confidence 55555555544 443333321 344666666432100 0 245666666 899987542 2
Q ss_pred eEEEEEe
Q 014163 418 TKLRVIS 424 (429)
Q Consensus 418 ~~lRi~~ 424 (429)
..+|++.
T Consensus 414 ~~iRi~~ 420 (448)
T 3dod_A 414 DVIAFLP 420 (448)
T ss_dssp TEEEECC
T ss_pred CEEEEEC
Confidence 5699964
No 223
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.72 E-value=5.1e-16 Score=154.25 Aligned_cols=313 Identities=12% Similarity=-0.013 Sum_probs=176.0
Q ss_pred ChHHHH-H-HHHH---HcCcCCCCCccChhhHHHHHHHHHHHHHhhC-CCCCCCCCCCceEeCCchHHHHHHHHHHHHHH
Q 014163 68 MEPECD-K-LVMA---SINKNYVDMDEYPVTTELQNRCVNMIAHLFN-TPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141 (429)
Q Consensus 68 ~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~le~~~~~~la~l~g-~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~ 141 (429)
.+|.+. + ++.+ .+..... +. .....+...++.+.++++++ .+. ..+.+|+||++|+..++++++...
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~~la~~la~~~~~~~~-----~~v~~~~~gseA~~~aik~a~~~~ 143 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALNKP-SN-SDVYSVAMARFVETFARVLGDPAL-----PHLFFVEGGALAVENALKAAFDWK 143 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTCCC-CT-TTCCCHHHHHHHHHHHHHHCCTTC-----CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC-CC-cccCCHHHHHHHHHHHHhcCCCCC-----CEEEEeCchHHHHHHHHHHHHHHh
Confidence 467788 7 8877 5544321 11 11223444567777888887 222 248999999999999998875321
Q ss_pred HHHHHhcCCCCC-CcEEEEcCCCchHHHH-HHHhc--------Cc-----eeEEEeccC--Cc-------cccCHHHHHH
Q 014163 142 QQKRKEQGKPYD-KPNIVTGANVQVCWEK-FARYF--------EV-----ELKEVKLEE--GY-------YVMNPVKAVE 197 (429)
Q Consensus 142 ~~~~~~~g~~~~-~~~vi~~~~~h~s~~~-~~~~~--------G~-----~v~~v~~~~--~~-------~~~d~~~l~~ 197 (429)
..+.+..|.+.. +++|++.++.|+.+.. +.... +. ++..+|.++ .. ...++++|++
T Consensus 144 ~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~ 223 (449)
T 2cjg_A 144 SRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARA 223 (449)
T ss_dssp HHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHH
Confidence 101000111111 3578888775543222 11211 22 455566543 11 1367788999
Q ss_pred Hhh---hCCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcccc-CCCCee
Q 014163 198 LVD---ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDF-RLPLVK 269 (429)
Q Consensus 198 ~i~---~~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-~~~~~d 269 (429)
+++ +++++|+++..++++|.+.+ +++|.++|++| |+++|+|++|.++.. ......... +. ..|
T Consensus 224 ~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~lli~DEv~~g~g~--~g~~~~~~~~~~-~~d 294 (449)
T 2cjg_A 224 AFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF------DALLIFDEVQTGCGL--TGTAWAYQQLDV-APD 294 (449)
T ss_dssp HHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSSTHHHHTC-CCS
T ss_pred HHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC------CcEEEEeccccCCCc--cCcceeecccCC-Cce
Confidence 996 46777777766788997766 99999999999 999999999986421 111111111 22 367
Q ss_pred EEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHH
Q 014163 270 SINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMG 349 (429)
Q Consensus 270 ~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~ 349 (429)
.++++ |++ ++|+++.++ +.. +.+. ..+........+ .+.+.....+..++++.+.. ++..++..+
T Consensus 295 i~t~s--K~l----~iG~~~~~~-~~~-~~l~--~~~~~~~~~~~t--~~~n~~~~~aa~aal~~~~~---~~~~~~~~~ 359 (449)
T 2cjg_A 295 IVAFG--KKT----QVCGVMAGR-RVD-EVAD--NVFAVPSRLNST--WGGNLTDMVRARRILEVIEA---EGLFERAVQ 359 (449)
T ss_dssp EEEEC--GGG----SSEEEEECG-GGG-GSTT--CTTTSTTSSCCS--SSSCHHHHHHHHHHHHHHHH---HTHHHHHHH
T ss_pred EEEec--Ccc----cEEEEEECH-HHh-hhhh--hcccCCcccccC--CCCCHHHHHHHHHHHHHHHh---ccHHHHHHH
Confidence 77655 776 478888754 222 2111 001110000011 11122333444455554433 345677788
Q ss_pred HHHHHHHHHHhC----CC-eEEeeCCCCceEEEEEecCCCCCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 350 NARALREGLEKT----GR-FEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 350 ~~~~l~~~L~~~----~~-~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
+++++.+.|+++ +. +..+.. ...++.|.+.. ..+..++.+.|. ++|+.+... +...+|+++
T Consensus 360 ~~~~l~~~L~~l~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~~~~~~l~----~~Gv~v~~~------g~~~iRi~~ 425 (449)
T 2cjg_A 360 HGKYLRARLDELAADFPAVVLDPRG--RGLMCAFSLPT--TADRDELIRQLW----QRAVIVLPA------GADTVRFRP 425 (449)
T ss_dssp HHHHHHHHHHHHHHHSTTTSEEEEE--ETTEEEEECSS--HHHHHHHHHHHH----HTTEECEEE------TTTEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCceeeEee--ccEEEEEEECC--hHHHHHHHHHHH----HCCeEEecC------CCCEEEEEC
Confidence 888888888764 43 443322 45667777642 112345555555 899987642 235799975
Q ss_pred c
Q 014163 425 H 425 (429)
Q Consensus 425 ~ 425 (429)
+
T Consensus 426 ~ 426 (449)
T 2cjg_A 426 P 426 (449)
T ss_dssp C
T ss_pred C
Confidence 3
No 224
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.70 E-value=5e-16 Score=153.63 Aligned_cols=299 Identities=14% Similarity=0.021 Sum_probs=171.1
Q ss_pred CCCCCcccccccc----CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 53 DGNPRLNLASFVT----TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
+++..+++.++.+ ++.+|.+.+++.+.+..... + . ...++..++.++++++++ .. ..+.+|+||++
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~-~-~--~~~~~~~~l~~~la~~~~-~~-----~~v~~~~sgse 123 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWL-Y-G--APGEAEVLLAEKILGYVK-RG-----GMIRFVNSGTE 123 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC-C-S--SCCHHHHHHHHHHHHHHC-TT-----CEEEEESSHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCC-C-C--CCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHH
Confidence 3444445544432 23567888888887765321 1 1 233455577788888884 21 13899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH-HHH-------------hcCc------eeEEEeccCCcc
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-FAR-------------YFEV------ELKEVKLEEGYY 188 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~-~~~-------------~~G~------~v~~v~~~~~~~ 188 (429)
|+..++++++.- . ++++|++.+++|+.+.. +.. ..|+ .+..+|.
T Consensus 124 A~~~al~~ar~~-~----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 187 (434)
T 2epj_A 124 ATMTAIRLARGY-T----------GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY----- 187 (434)
T ss_dssp HHHHHHHHHHHH-H----------CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----
T ss_pred HHHHHHHHHHHh-h----------CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----
Confidence 999999986531 1 12466666655443221 111 1233 2333432
Q ss_pred ccCHHHHHHHhhh---CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcc
Q 014163 189 VMNPVKAVELVDE---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 261 (429)
Q Consensus 189 ~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (429)
.|+++|++++++ ++++|+++..++++|.+.| +++|.++|++| |+++|+|++|+++ . .......
T Consensus 188 -~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~-~--~g~~~~~ 257 (434)
T 2epj_A 188 -NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES------GALLILDEVVTGF-R--LGLEGAQ 257 (434)
T ss_dssp -TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH------TCEEEEEETTTTT-T--SSTTHHH
T ss_pred -CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc------CCEEEEEcchhce-e--CCcchhh
Confidence 389999999974 5666666665667999888 99999999999 9999999999864 1 1111111
Q ss_pred c-cCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccC-CCCCCCCCceeccCCchhHHHHHHHHHHHcCHHH
Q 014163 262 D-FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEG 339 (429)
Q Consensus 262 ~-~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g 339 (429)
+ ++. ..|.+++ .|+++++.++|+++.++ +. .+.+..... +... + .+.+.....+..++++.+..
T Consensus 258 ~~~~~-~~di~s~--sK~l~~G~~~G~v~~~~-~~-~~~l~~~~~~~~~~---t----~~~~~~~~aa~~a~l~~~~~-- 323 (434)
T 2epj_A 258 GYFNI-EGDIIVL--GKIIGGGFPVGAVAGSR-EV-MSLLTPQGKVFNAG---T----FNAHPITMAAGLATLKALEE-- 323 (434)
T ss_dssp HHHTC-CCSEEEE--EGGGGTTSSCEEEEECH-HH-HTTBTTTSSBCCCC---T----TTTCHHHHHHHHHHHHHHHH--
T ss_pred HHhCC-CCCeeee--cchhcCCcceeeeeecH-HH-HHhhccCCCcccCC---C----CCcCHHHHHHHHHHHHHHHh--
Confidence 1 121 3566554 48777777889988764 22 222211000 1100 1 11222233344445554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCeEEeeCCCCceEEEEEecCCC-----------CCCHHHHHHHHHHHHhccCc
Q 014163 340 YKNIMENCMGNARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSS-----------AHTVFEISEGLRKKLNRFQV 404 (429)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~-----------~~~~~~~~~~L~~~l~~~G~ 404 (429)
++..++..++++++.+.|+++ + +....++ ...++.+.+.... .....++.+.|. ++|+
T Consensus 324 -~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv 396 (434)
T 2epj_A 324 -EPVYSVSREAAKALEEAASEVLDRTG-LPYTINR-VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML----RRGV 396 (434)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEE-ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH----HTTE
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEE-eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH----HCCe
Confidence 345677778888888888765 4 3211122 4567777775310 011334444444 8999
Q ss_pred eecc
Q 014163 405 VYPQ 408 (429)
Q Consensus 405 ~~~~ 408 (429)
.+..
T Consensus 397 ~v~~ 400 (434)
T 2epj_A 397 FIAP 400 (434)
T ss_dssp ECCS
T ss_pred EEec
Confidence 8765
No 225
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.70 E-value=1e-15 Score=153.12 Aligned_cols=315 Identities=10% Similarity=-0.054 Sum_probs=179.2
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+......+. +....+...++.++++++++.+. ....+++||++|+..++++++..+..
T Consensus 71 ~~p~v~~A~~~~l~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~-----~~v~~~~sGseA~~~Aik~a~~~~~~---- 140 (476)
T 3i5t_A 71 GRREIVDAMAHQAMVLPYASP-WYMATSPAARLAEKIATLTPGDL-----NRIFFTTGGSTAVDSALRFSEFYNNV---- 140 (476)
T ss_dssp CCHHHHHHHHHHHHHCCCCCT-TTCBCHHHHHHHHHHHTTSSTTC-----CEEEEESSHHHHHHHHHHHHHHHHHH----
T ss_pred CCHHHHHHHHHHHHhccCccc-CccCCHHHHHHHHHHHhcCCCCc-----CEEEEeCchHHHHHHHHHHHHHHHHh----
Confidence 467888888877765332211 12345566788889999886543 23899999999999999999875422
Q ss_pred cCCCCCCcEEEEcCCCchHHH-HHHHhcCc------------eeEEEeccCC--ccccC--------HHHHHHHhh----
Q 014163 148 QGKPYDKPNIVTGANVQVCWE-KFARYFEV------------ELKEVKLEEG--YYVMN--------PVKAVELVD---- 200 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~-~~~~~~G~------------~v~~v~~~~~--~~~~d--------~~~l~~~i~---- 200 (429)
.|.. +++.|++.++.|+.+. .+....|. ++..++.... .+..| +++|+++++
T Consensus 141 ~g~~-~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~ 219 (476)
T 3i5t_A 141 LGRP-QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGP 219 (476)
T ss_dssp TTCT-TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCCC-CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 2211 2356777666554333 23222221 2334443210 00122 789999887
Q ss_pred hCCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc--cCCCCeeEEEEc
Q 014163 201 ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD--FRLPLVKSINVS 274 (429)
Q Consensus 201 ~~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~--~~~~~~d~~~~s 274 (429)
+++.+|++..+++++|.+.+ +++|.++|++| |+++|+|++|.++.- ........ +++ ..|.++++
T Consensus 220 ~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~------gillI~DEv~~g~gr--~G~~~~~~~~~~v-~pdi~t~s 290 (476)
T 3i5t_A 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH------DILYISDEVVTGFGR--CGEWFASEKVFGV-VPDIITFA 290 (476)
T ss_dssp GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT------TCEEEEECTTTTTTT--TSSSCHHHHTTCC-CCSEEEEC
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc------CCEEEEEecccCCcc--ccCceeeecccCC-Ccchhhhh
Confidence 34577777777777787655 99999999999 999999999987421 11111111 122 35777765
Q ss_pred CcccCCCC-CCeEEEEEeCCCCccccccccc----CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHH
Q 014163 275 GHKYGLVY-AGVGWVVWRTKDDLPDELVFHI----NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMG 349 (429)
Q Consensus 275 ~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~ 349 (429)
|.+.++ +++|+++.+++ +.+.+.... .+..+ .+ .+-+.....+..++++.+.. ++..++..+
T Consensus 291 --K~l~~G~~plg~v~~~~~--i~~~~~~~~~~~~~~~~~----~t--~~~np~a~aAa~aaL~~~~~---~~~~~~~~~ 357 (476)
T 3i5t_A 291 --KGVTSGYVPLGGLAISEA--VLARISGENAKGSWFTNG----YT--YSNQPVACAAALANIELMER---EGIVDQARE 357 (476)
T ss_dssp --GGGGTTSSCCEEEEECHH--HHHTTSGGGCTTCEECCC----CT--TTTCHHHHHHHHHHHHHHHH---TTHHHHHHH
T ss_pred --hhhcCCCcCeEEEEECHH--HHHHHhcCCccccccccc----CC--CCcCHHHHHHHHHHHHHHHh---HHHHHHHHH
Confidence 877777 78898887542 222221110 00100 01 11111233334444544323 356677778
Q ss_pred HHHHHHHHHHhC---CCeEEeeCCCCceEEEEEecCCCC--CC---HHHHHHHHHHHHhccCceecccCCCCCCCceEEE
Q 014163 350 NARALREGLEKT---GRFEILSKDVGVPLVAFSLKDSSA--HT---VFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLR 421 (429)
Q Consensus 350 ~~~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~~--~~---~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lR 421 (429)
+.+++++.|+++ |.+..+.. ...++.+.+..... .. ..+....+.++|.++|+.+.+. + ..+|
T Consensus 358 ~~~~l~~~L~~l~~~~~v~~v~~--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------g-~~iR 428 (476)
T 3i5t_A 358 MADYFAAALASLRDLPGVAETRS--VGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL------G-DLCV 428 (476)
T ss_dssp HHHHHHHHHHTTTTSTTEEEEEE--ETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE------T-TEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEe--cCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec------C-CEEE
Confidence 888888888764 33333322 34566676643210 00 0113344445555999987642 2 5699
Q ss_pred EEe
Q 014163 422 VIS 424 (429)
Q Consensus 422 i~~ 424 (429)
++.
T Consensus 429 i~p 431 (476)
T 3i5t_A 429 ISP 431 (476)
T ss_dssp ECC
T ss_pred EEC
Confidence 983
No 226
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.70 E-value=1.9e-15 Score=149.25 Aligned_cols=308 Identities=12% Similarity=0.064 Sum_probs=167.3
Q ss_pred CCCCCccccccccC----CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 53 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
+++.++++.++... ..+|.+.+++.+.+..........+.. .++.++++++++ .. ....+|+||++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~----~~l~~~la~~~~-~~-----~~v~~~~~Gse 120 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIE----NKLAKLVIERVP-SI-----EIVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHH----HHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHH----HHHHHHHHHhCC-CC-----CEEEEeCChHH
Confidence 44544444444321 246788888887776543222223333 345566777775 22 23899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCC-chHHHHHHHhcCceeEEEeccCCccc-------------cCHHH
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV-QVCWEKFARYFEVELKEVKLEEGYYV-------------MNPVK 194 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~-h~s~~~~~~~~G~~v~~v~~~~~~~~-------------~d~~~ 194 (429)
|+..+++.++... +++.|++.+++ |.....++...|..+..++.....+. -|+++
T Consensus 121 a~~~ai~~a~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 121 ATMSALRLARGYT-----------GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp HHHHHHHHHHHHH-----------TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHH
T ss_pred HHHHHHHHHHHhh-----------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHH
Confidence 9999999886531 12466665554 43333333333333222222111010 18999
Q ss_pred HHHHhhh---CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCC
Q 014163 195 AVELVDE---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLP 266 (429)
Q Consensus 195 l~~~i~~---~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~ 266 (429)
|++++++ ++.+|++...++++|.+.+ +++|.++|++| |+++|+|++|.++ . ........ ++.
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~~~~~~- 259 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQN------GALLIFDEVMTGF-R--VAYNCGQGYYGV- 259 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTT-T--SSTTHHHHHHTC-
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchHHHHhCC-
Confidence 9999873 4566666666666788877 99999999999 9999999999864 1 11111011 121
Q ss_pred CeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccC-CCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHH
Q 014163 267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN-YLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME 345 (429)
Q Consensus 267 ~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~ 345 (429)
..|.++++ |.+++++++|+++.++ +. .+.+..... +... + .+.+.....+..++++.+. ++..+
T Consensus 260 ~~di~t~s--K~~~~G~~iG~~~~~~-~~-~~~~~~~~~~~~~~---t----~~~~~~a~aaa~aal~~~~----~~~~~ 324 (429)
T 3k28_A 260 TPDLTCLG--KVIGGGLPVGAYGGKA-EI-MRQVAPSGPIYQAG---T----LSGNPLAMAAGYETLVQLT----PESYV 324 (429)
T ss_dssp CCSEEEEC--GGGGTTSCCEEEEECH-HH-HTTBTTTSSBCCCC---T----TTTCHHHHHHHHHHHHTCC----HHHHH
T ss_pred CCceehhh--hhhcCCCCeEEEEEcH-HH-HhhhccCCCccccC---C----CCCChHHHHHHHHHHHHHH----HHHHH
Confidence 25666654 6666678999988754 22 122211100 1111 0 1112223333444444433 56677
Q ss_pred HHHHHHHHHHHHHHhC----CCeEEeeCCCCceEEEEEecCCCCC-------CHHHHHHHHHHHHhccCceecc
Q 014163 346 NCMGNARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSSAH-------TVFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 346 ~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~-------~~~~~~~~L~~~l~~~G~~~~~ 408 (429)
+..++++++.+.|+++ +.+..+. . ...++.|.+...... ........+.++|.++|+.+.+
T Consensus 325 ~~~~~~~~l~~~L~~~~~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~ 396 (429)
T 3k28_A 325 EFERKAEMLEAGLRKAAEKHGIPHHIN-R-AGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPP 396 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEE-E-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEE-e-eccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEec
Confidence 7777888888877764 4222221 1 345666665422100 0112233444444499998764
No 227
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.69 E-value=1.2e-15 Score=151.85 Aligned_cols=263 Identities=12% Similarity=0.002 Sum_probs=151.6
Q ss_pred ChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHh
Q 014163 68 MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKE 147 (429)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~ 147 (429)
.+|.+.+++.+.+.... .+ ....++++++.++++++++ .. ..+.+|+||++|+..++++++.- .
T Consensus 74 ~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~-~~-----~~v~~~~gg~eA~~~al~~ar~~-~----- 137 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP-SI-----RKLRFTGSGTETTLLALRVARAF-T----- 137 (453)
T ss_dssp TCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT-TC-----SEEEEESCHHHHHHHHHHHHHHH-H-----
T ss_pred CCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC-CC-----CEEEEeCCHHHHHHHHHHHHHHh-h-----
Confidence 56778888888876532 12 2356788899999999885 22 23899999999999999986531 1
Q ss_pred cCCCCCCcEEEEcCCCchHHHHHH-H----------hcCce------eEEEeccCCccccCHHHHHHHhhh---CCeEEE
Q 014163 148 QGKPYDKPNIVTGANVQVCWEKFA-R----------YFEVE------LKEVKLEEGYYVMNPVKAVELVDE---NTICVA 207 (429)
Q Consensus 148 ~g~~~~~~~vi~~~~~h~s~~~~~-~----------~~G~~------v~~v~~~~~~~~~d~~~l~~~i~~---~~~~v~ 207 (429)
+++.|++.+++|+.+...+ . ..|+. +..+| + .|+++|++++++ ++++|+
T Consensus 138 -----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-~d~~~le~~l~~~~~~~~~vi 206 (453)
T 2cy8_A 138 -----GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIR-----P-DDIEGMREVFANHGSDIAAFI 206 (453)
T ss_dssp -----CCCEEEEECC----------------------------CGGGEEEEC-----T-TCHHHHHHHHHHHGGGEEEEE
T ss_pred -----CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecC-----C-CCHHHHHHHHHhcCCCEEEEE
Confidence 1246777776655432221 1 12332 22222 1 489999999984 566666
Q ss_pred EeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEEcCcccCCCC
Q 014163 208 AILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSGHKYGLVY 282 (429)
Q Consensus 208 ~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~s~hK~~~~p 282 (429)
++..++++|.+.+ +++|.++|++| |+++++|++|+++ . .......+ ++. ..|.++++ |++.++
T Consensus 207 ~ep~~~~tG~~~~~~~~l~~l~~l~~~~------g~~lI~DEv~~g~-~--~g~~~~~~~~~~-~~di~s~s--K~l~~G 274 (453)
T 2cy8_A 207 AEPVGSHFGVTPVSDSFLREGAELARQY------GALFILDEVISGF-R--VGNHGMQALLDV-QPDLTCLA--KASAGG 274 (453)
T ss_dssp ECSSEHHHHTEECCHHHHHHHHHHHHHT------TCEEEEECTTTTT-T--TCTTHHHHHHTC-CCSEEEEE--GGGGTT
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecCcccc-c--cCchhhhHHhCC-CCcEEEEC--hhhhCC
Confidence 6655577898877 99999999999 9999999999864 1 11111111 121 25665443 887777
Q ss_pred CCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHhC
Q 014163 283 AGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-LGFEGYKNIMENCMGNARALREGLEKT 361 (429)
Q Consensus 283 ~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~-l~~~g~~~~~~~~~~~~~~l~~~L~~~ 361 (429)
.++|+++.++ + +.+.+... . ........+ .+.+.....+..++++. + . ++..++..++++++.+.|+++
T Consensus 275 ~~~G~v~~~~-~-~~~~l~~~-~-~~~~~~~~t--~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~ 344 (453)
T 2cy8_A 275 LPGGILGGRE-D-VMGVLSRG-S-DRKVLHQGT--FTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHL 344 (453)
T ss_dssp SSCEEEEECH-H-HHTTSSSC-C------------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEechH-H-HHHHhccc-c-CCCceeCCC--CCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHH
Confidence 8899998764 2 21221110 0 000000001 11222334444455554 4 3 345667777888888888764
Q ss_pred ----CCeEEeeCCCCceEEEEEec
Q 014163 362 ----GRFEILSKDVGVPLVAFSLK 381 (429)
Q Consensus 362 ----~~~~~~~~~~~~~~v~f~~~ 381 (429)
+....+ ++ ...++.+.+.
T Consensus 345 ~~~~~~~~~~-~~-~g~~~~i~~~ 366 (453)
T 2cy8_A 345 FARKGLNWLA-YG-RFSGFHLMPG 366 (453)
T ss_dssp HHHTTCCEEE-EC-CTTEEEEEET
T ss_pred HhhCCCcEEE-EE-eeeEEEEEEe
Confidence 422222 22 4567777775
No 228
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.69 E-value=3.4e-15 Score=147.23 Aligned_cols=305 Identities=12% Similarity=0.022 Sum_probs=169.4
Q ss_pred CCCCCccccccccC----CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 53 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
+++..+++.++.+. +.+|.+.+++.+.++.... +. + ..+...++.++++++++ +. ....+|+||++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~-~--~~~~~~~la~~l~~~~~-~~-----~~v~~~~ggse 119 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS-FG-A--PCALENVLAEMVNDAVP-SI-----EMVRFVNSGTE 119 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC-CS-S--CCHHHHHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC-cC-C--CCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHH
Confidence 34444444444321 2467888888888765422 21 1 34556678888999887 32 23899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH-HHHHHHhcCce-------------------eEEEeccCCcc
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-WEKFARYFEVE-------------------LKEVKLEEGYY 188 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s-~~~~~~~~G~~-------------------v~~v~~~~~~~ 188 (429)
|+..+++.++.. . ++++|++.+++|+. ...+....|.. +..+|.
T Consensus 120 a~~~al~~a~~~-------~----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 183 (427)
T 3fq8_A 120 ACMAVLRIMRAY-------T----GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY----- 183 (427)
T ss_dssp HHHHHHHHHHHH-------H----CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-----
T ss_pred HHHHHHHHHHHh-------h----CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-----
Confidence 999999876542 1 12466665555433 22222221211 122221
Q ss_pred ccCHHHHHHHhhh---CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcc
Q 014163 189 VMNPVKAVELVDE---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 261 (429)
Q Consensus 189 ~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~ 261 (429)
-|+++|++++++ ++++|+++.+++++|.+.+ +++|.++|++| |+++|+|++|+++ . .......
T Consensus 184 -~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~------~~~li~DEv~~g~-~--~g~~~~~ 253 (427)
T 3fq8_A 184 -NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH------DALLVFDEVITGF-R--IAYGGVQ 253 (427)
T ss_dssp -TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT------TCEEEEECTTTBT-T--TBTTHHH
T ss_pred -CCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEecccccc-c--cCcchhh
Confidence 189999999987 5677777777778899888 99999999999 9999999999864 1 1111111
Q ss_pred ccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHH
Q 014163 262 DFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYK 341 (429)
Q Consensus 262 ~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~ 341 (429)
+......|.++++ |.+.+++++|+++.++ +.. +.+.....+.... + .+.+.....+..++++.+..+
T Consensus 254 ~~~~~~~di~t~s--K~~~~G~~~G~~~~~~-~~~-~~~~~~~~~~~~~--t----~~~~~~~~aa~~aal~~~~~~--- 320 (427)
T 3fq8_A 254 EKFGVTPDLTTLG--KIIGGGLPVGAYGGKR-EIM-QLVAPAGPMYQAG--T----LSGNPLAMTAGIKTLELLRQP--- 320 (427)
T ss_dssp HHTTCCCSEEEEC--GGGGTTSSCEEEEECH-HHH-TTBTTTSSBCCCC--T----TTTCHHHHHHHHHHHHHHTST---
T ss_pred HhcCCCCChhhhh--hhhhCCcceEEEEEcH-HHH-HhhccCCCccccC--C----CCcCHHHHHHHHHHHHHHHhc---
Confidence 1111135666665 7777777899987643 221 2221110011000 0 111223334444455544333
Q ss_pred HHHHHHHHHHHHHHHHHHhC----CCeEEeeCCCCceEEEEEecCCCCC-------CHHHHHHHHHHHHhccCceecc
Q 014163 342 NIMENCMGNARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSSAH-------TVFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 342 ~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~-------~~~~~~~~L~~~l~~~G~~~~~ 408 (429)
+..++..++++++++.|+++ + +...... ...++.|.+...... ........+.++|.++|+.+..
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~ 396 (427)
T 3fq8_A 321 GTYEYLDQITKRLSDGLLAIAQETG-HAACGGQ-VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP 396 (427)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEE-ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEE-eeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEec
Confidence 34555666666666666543 3 2111111 345666666432111 0111233344444489998765
No 229
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.67 E-value=1.3e-14 Score=143.27 Aligned_cols=310 Identities=12% Similarity=0.060 Sum_probs=160.8
Q ss_pred CCCCCccccccccC----CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 53 DGNPRLNLASFVTT----WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 53 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
+++.++++.++... ..+|.+.+++.+.+...... .++ .+...++.++++++++ .. ....+|+||++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~--~~~--~~~~~~la~~l~~~~~-~~-----~~v~~~~sGse 120 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF--GAP--TEMEVKMAQLVTDLVP-TM-----DMVRMVNSGTE 120 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC--SSC--CHHHHHHHHHHHHHST-TC-----SEEEEESSHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc--CCC--CHHHHHHHHHHHhhCC-CC-----CEEEEeCcHHH
Confidence 34444444444321 24688889888887664321 122 2344566677888886 22 23899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCC-chHHHHHHHhcCceeE--EEeccCC----------cc-ccCHHH
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANV-QVCWEKFARYFEVELK--EVKLEEG----------YY-VMNPVK 194 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~-h~s~~~~~~~~G~~v~--~v~~~~~----------~~-~~d~~~ 194 (429)
|+..+++.++.. . +++.|++.+.. |.....++...|.... ..|...+ .. .-|+++
T Consensus 121 a~~~al~~a~~~-------~----~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 4e77_A 121 ATMSAIRLARGY-------T----GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLAS 189 (429)
T ss_dssp HHHHHHHHHHHH-------H----CCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHH
T ss_pred HHHHHHHHHHHh-------h----CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHH
Confidence 999999977642 1 12466665554 4433322211111110 0111000 00 128999
Q ss_pred HHHHhhh---CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCC
Q 014163 195 AVELVDE---NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLP 266 (429)
Q Consensus 195 l~~~i~~---~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~ 266 (429)
|++++++ ++.+|++...++.+|.+.+ +++|.++|++| |+++|+|++|+++ - .......+ ++.
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~------~~lli~DEv~~g~-r--~g~~~~~~~~~~- 259 (429)
T 4e77_A 190 VRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF------GALLIIDEVMTGF-R--VALAGAQDYYHV- 259 (429)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH------TCEEEEEETTTBT-T--TBTTCHHHHTTC-
T ss_pred HHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc------CCEEEEeccccCc-c--cCcchHHHhcCC-
Confidence 9999985 3455544444445677777 99999999999 9999999999864 1 11111111 121
Q ss_pred CeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHH
Q 014163 267 LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIME 345 (429)
Q Consensus 267 ~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~ 345 (429)
..|.++++ |.+.++.++|+++.++ +.. +.+.... .+..+ + .+.+.....+..++++.+.. ++..+
T Consensus 260 ~pdi~t~s--K~~~~G~~~G~~~~~~-~~~-~~l~~~~~~~~~~---t----~~~~~~~~aaa~aal~~~~~---~~~~~ 325 (429)
T 4e77_A 260 IPDLTCLG--KIIGGGMPVGAFGGRR-EVM-NALAPTGPVYQAG---T----LSGNPIAMAAGFACLTEISQ---VGVYE 325 (429)
T ss_dssp CCSEEEEE--GGGGTTSCCEEEEECH-HHH-TTBTTTSSBCC-----C----CCCCHHHHHHHHHHHHHHTS---TTHHH
T ss_pred CCCeeeec--ccccCCCCeEEEEECH-HHH-HHhccCCCccccC---C----CCCCHHHHHHHHHHHHHHHh---cCHHH
Confidence 24666554 7777788899887643 221 2211100 01110 1 12222344445555555433 34455
Q ss_pred HHHHHHHHHHHHHHh----CCCeEEeeCCCCceEEEEEecCCCC-CC-------HHHHHHHHHHHHhccCceeccc
Q 014163 346 NCMGNARALREGLEK----TGRFEILSKDVGVPLVAFSLKDSSA-HT-------VFEISEGLRKKLNRFQVVYPQK 409 (429)
Q Consensus 346 ~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~v~f~~~~~~~-~~-------~~~~~~~L~~~l~~~G~~~~~~ 409 (429)
+..++.+++++.|++ .+..... +. ...++.+.+..... .+ .......+.++|.++|+.+...
T Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~ 399 (429)
T 4e77_A 326 TLTELTDSLATGLRHAAKEENIPLVV-NH-VGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPS 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEE-EE-ETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEE-EE-eeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeec
Confidence 566666666666654 3421111 11 34566777643210 00 0112233444444899997653
No 230
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.64 E-value=5e-15 Score=145.93 Aligned_cols=302 Identities=14% Similarity=0.056 Sum_probs=168.8
Q ss_pred CCCCCcccccccc----CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 53 DGNPRLNLASFVT----TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
+++..+++.++.+ ++.+|.+.+++.+.+.... .+ ....+++.++.++++++++ .. ....+++||++
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~---~~~~~~~~~l~~~l~~~~~-~~-----~~v~~~~~g~e 119 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL-TF---GAPSPLEVALAKKVKRAYP-FV-----DLVRFVNSGTE 119 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CC---SSCCHHHHHHHHHHHHHCT-TC-----CEEEEESSHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHHhCC-CC-----CEEEEeCCHHH
Confidence 3444445544431 2356788888888776532 12 1234556677788888885 22 23889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHH-HHHh-------------cCc------eeEEEeccCCcc
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEK-FARY-------------FEV------ELKEVKLEEGYY 188 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~-~~~~-------------~G~------~v~~v~~~~~~~ 188 (429)
|+..++++++.- . +++.|++.+++|+.+.. +... .|+ .+..+|.
T Consensus 120 a~~~al~~ar~~-~----------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 183 (424)
T 2e7u_A 120 ATMSALRLARGY-T----------GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY----- 183 (424)
T ss_dssp HHHHHHHHHHHH-H----------CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----
T ss_pred HHHHHHHHHHHh-h----------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----
Confidence 999999876431 1 12467776666544322 2111 122 1223321
Q ss_pred ccCHHHHHHHhhh---CCeEEEEeeCCC-ccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc
Q 014163 189 VMNPVKAVELVDE---NTICVAAILGST-LTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE 260 (429)
Q Consensus 189 ~~d~~~l~~~i~~---~~~~v~~~~~~~-~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~ 260 (429)
.|+++|++++++ ++++|++ .|.+ ++|.+.+ +++|.++ ++| |+++++|++|+++ . ......
T Consensus 184 -~d~~~le~~l~~~~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l-~~~------g~~lI~DEv~~g~-~--~g~~~~ 251 (424)
T 2e7u_A 184 -NDPEGLREVLKRRGEEIAAIIF-EPVVGNAGVLVPTEDFLKALHEA-KAY------GVLLIADEVMTGF-R--LAFGGA 251 (424)
T ss_dssp -TCHHHHHHHHHHHGGGEEEEEE-CSSBCTTSCBCCCHHHHHHHHHG-GGG------TCEEEEECTTTTT-T--SSTTHH
T ss_pred -CCHHHHHHHHHhCCCCEEEEEE-eCCCCCCCCcCCCHHHHHHHHHH-HHc------CCEEEEecCcccc-c--cchhHH
Confidence 489999999973 4455544 5544 4898877 9999999 999 9999999999864 1 111111
Q ss_pred cc-cCCCCeeEEEEcCcccCCCCCCeEEEEEeCCCCccccccccc-CCCCCCCCCceeccCCchhHHHHHHHHHHHcCHH
Q 014163 261 WD-FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHI-NYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFE 338 (429)
Q Consensus 261 ~~-~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~ 338 (429)
.+ ++. ..|.+++ .|+++++.++|+++.++ + +.+.+.... .+... + .+.+.....+..++++.+..
T Consensus 252 ~~~~~~-~~di~s~--sK~l~~G~~~G~~~~~~-~-~~~~~~~~~~~~~~~---t----~~~~~~~~aaa~aal~~~~~- 318 (424)
T 2e7u_A 252 TELLGL-KPDLVTL--GKILGGGLPAAAYAGRR-E-IMEKVAPLGPVYQAG---T----LSGNPLAMAAGLATLELLEE- 318 (424)
T ss_dssp HHHHTC-CCSEEEE--CGGGGTTSSCEEEEECH-H-HHTTBTTTSSBCCCC---T----TCSCHHHHHHHHHHHHHHHH-
T ss_pred HHHhCC-Ccchhhh--hhhhhCCcceEEEEEcH-H-HHhhhcccCCcccCC---C----CCCCHHHHHHHHHHHHHHHh-
Confidence 11 121 2566544 58877778899988764 2 222221100 01100 1 11222233344445544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----CCeEEeeCCCCceEEEEEecCCCCCC-------HHHHHHHHHHHHhccCceec
Q 014163 339 GYKNIMENCMGNARALREGLEKT----GRFEILSKDVGVPLVAFSLKDSSAHT-------VFEISEGLRKKLNRFQVVYP 407 (429)
Q Consensus 339 g~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~v~f~~~~~~~~~-------~~~~~~~L~~~l~~~G~~~~ 407 (429)
.++..++..++++++.+.|+++ + +....++ ...++.+.+......+ .......+.++|.++|+.+.
T Consensus 319 -~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 395 (424)
T 2e7u_A 319 -NPGYYAYLEDLGARLEAGLKEVLKEKG-LPHTVNR-VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWP 395 (424)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECC
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEe-eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEe
Confidence 2456777888888888888765 4 3211122 3456777764310000 01123334444449999976
Q ss_pred c
Q 014163 408 Q 408 (429)
Q Consensus 408 ~ 408 (429)
.
T Consensus 396 ~ 396 (424)
T 2e7u_A 396 P 396 (424)
T ss_dssp S
T ss_pred c
Confidence 5
No 231
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.60 E-value=2e-14 Score=143.57 Aligned_cols=321 Identities=13% Similarity=0.036 Sum_probs=176.8
Q ss_pred CCCCccccccccC----CChHHHHHHHHHHcCcC----CCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCC
Q 014163 54 GNPRLNLASFVTT----WMEPECDKLVMASINKN----YVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVG 125 (429)
Q Consensus 54 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g 125 (429)
|+.++++.++... ..+|.+.+++.+.+... ...+.. ....++++++.+.++++++... ..+.+++|
T Consensus 62 G~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~~~~-----~~v~f~~s 135 (472)
T 1ohv_A 62 GNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAPKGM-----SQLITMAC 135 (472)
T ss_dssp SCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCCTTC-----CEEEEESS
T ss_pred CCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCCCCc-----CEEEEeCC
Confidence 4444444444332 34688888887665321 111211 2345677777776777664332 13899999
Q ss_pred chHHHHHHHHHHHHHHHHH-HH----------------hcCCCCCCcEEEEcCCCch-HHHHHHHhcCc--------ee-
Q 014163 126 SSEAIMLAGLAFKRKWQQK-RK----------------EQGKPYDKPNIVTGANVQV-CWEKFARYFEV--------EL- 178 (429)
Q Consensus 126 ~t~a~~~al~a~~~~~~~~-~~----------------~~g~~~~~~~vi~~~~~h~-s~~~~~~~~G~--------~v- 178 (429)
|+||+..++++++..+..+ +. .+|. .+++|++.+..|+ ....+....|. .+
T Consensus 136 GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~--~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~ 213 (472)
T 1ohv_A 136 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGC--PDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF 213 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTS--CCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCC
T ss_pred chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccC--CCCeEEEECCCcccccHHHHhcCCCccccccCCCCC
Confidence 9999999999987432110 00 0110 1357777766544 33333333332 11
Q ss_pred --EEEeccCCcc-------------ccCHHHHHHHhhh------CCeEEEEeeCCCccccccC----hHHHHHHHHHhhh
Q 014163 179 --KEVKLEEGYY-------------VMNPVKAVELVDE------NTICVAAILGSTLTGEFED----VKLLHDLLTKKNE 233 (429)
Q Consensus 179 --~~v~~~~~~~-------------~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~ 233 (429)
..+++....+ ..|+++|+++|++ ++++|++...++++|.+.| +++|.++|++|
T Consensus 214 ~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~-- 291 (472)
T 1ohv_A 214 DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-- 291 (472)
T ss_dssp CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT--
T ss_pred CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh--
Confidence 1233211000 2378999999987 7888888777888998877 99999999999
Q ss_pred ccCCCccEEeecccccccccccCCCCccc-cCCC-CeeEEEEcCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCC
Q 014163 234 ETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLP-LVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQ 311 (429)
Q Consensus 234 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~-~~d~~~~s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~ 311 (429)
|+++|+|++|.++.. ....+... +++. .+|.++++ |.+++ .|+++ + ++ +.. .......+
T Consensus 292 ----g~lli~DEv~~g~g~--~g~~~~~~~~gv~~~~Di~t~s--K~~l~---GG~~~-~-~~-~~~---~~~~~~~~-- 352 (472)
T 1ohv_A 292 ----GCAFLVDEVQTGGGS--TGKFWAHEHWGLDDPADVMTFS--KKMMT---GGFFH-K-EE-FRP---NAPYRIFN-- 352 (472)
T ss_dssp ----TCEEEEECTTTTTTT--TSSSSGGGGGCCSSCCSEEEEC--GGGSS---EEEEE-C-GG-GSC---SSSSSSCC--
T ss_pred ----CCEEEEeCcccCCCC--CCCchhccccCCCCCCCEEEEc--ccccc---CCccC-c-hh-hcc---cccccccC--
Confidence 999999999986321 11101111 1211 26777766 86322 25554 2 22 210 01111111
Q ss_pred CCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC----CC-eEEeeCCCCceEEEEEecCCCCC
Q 014163 312 PTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GR-FEILSKDVGVPLVAFSLKDSSAH 386 (429)
Q Consensus 312 ~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~~~~v~f~~~~~~~~ 386 (429)
+ .+.+.....+..++++.+..+ +..++..+++++|.+.|+++ +. +..+.. ...++.|.+.. ..
T Consensus 353 -T----~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~--~g~~~~~~~~~--~~ 420 (472)
T 1ohv_A 353 -T----WLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG--RGTFCSFDTPD--ES 420 (472)
T ss_dssp -S----SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE--ETTEEEEECSS--HH
T ss_pred -c----cCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC--CceEEEEEeCC--hh
Confidence 1 111123334444555554332 35677788888888888765 32 332222 34566676532 11
Q ss_pred CHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEec
Q 014163 387 TVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVISH 425 (429)
Q Consensus 387 ~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~~ 425 (429)
...++.+.|. ++|+.+... +...+|++++
T Consensus 421 ~~~~~~~~l~----~~Gv~~~~~------g~~~iRi~~~ 449 (472)
T 1ohv_A 421 IRNKLISIAR----NKGVMLGGC------GDKSIRFRPT 449 (472)
T ss_dssp HHHHHHHHHH----HTTEECEEE------TTTEEEECCC
T ss_pred HHHHHHHHHH----HCCeEEecC------CCCEEEEECC
Confidence 2345555555 899987642 2356999664
No 232
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.15 E-value=9.9e-15 Score=144.54 Aligned_cols=308 Identities=12% Similarity=0.003 Sum_probs=167.7
Q ss_pred CCCCCcccccccc----CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhh-CCCCCCCCCCCceEeCCch
Q 014163 53 DGNPRLNLASFVT----TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF-NTPVADDKTAVGVGTVGSS 127 (429)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~-g~~~~~~~~~~~~~t~g~t 127 (429)
+|+.++++.++.. ...+|.+.+++.+.+..... + ....+.+.++.+.+++++ +.+ ...++++|+
T Consensus 98 dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~-~---~~~~~~~~~Lae~L~~~~p~~~-------~v~~~nSGs 166 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN-L---STQTENEALFAEAVCDRFPSID-------LVRFTNSGT 166 (465)
Confidence 4555555444433 12357777877776655321 1 123344556667788887 332 278999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchH-HHHHH---HhcCceeEEEeccCCccccCHHHHHHHhh---
Q 014163 128 EAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVC-WEKFA---RYFEVELKEVKLEEGYYVMNPVKAVELVD--- 200 (429)
Q Consensus 128 ~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s-~~~~~---~~~G~~v~~v~~~~~~~~~d~~~l~~~i~--- 200 (429)
+|+..+++.++.. . +++.|++.+.++.. ...+. ...|+....+++. + -|+++|+++++
T Consensus 167 eA~~~Aik~ar~~-t----------gr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~---~-~d~~~l~~~l~~~~ 231 (465)
T 2yky_A 167 EANLMALATATAI-T----------GRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV---Y-NDVEGTADLLKRHG 231 (465)
Confidence 9999999987542 1 12467776665543 22222 1123311122221 1 37889999998
Q ss_pred hCCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCccc-cCCCCeeEEEEcC
Q 014163 201 ENTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWD-FRLPLVKSINVSG 275 (429)
Q Consensus 201 ~~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~s~ 275 (429)
+++++|++....+++|.+.+ +++|.++|++| |+++++|++|. +- .......+ +++ ..|.++ .
T Consensus 232 ~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~~-~r---~g~~~a~~~~gv-~pDi~t--~ 298 (465)
T 2yky_A 232 HDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRC------GALLIFDEVMT-SR---LSGGGAQEMLGI-SADLTT--L 298 (465)
Confidence 56778777665666897766 99999999999 99999999998 52 11111111 111 256554 3
Q ss_pred cccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Q 014163 276 HKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALR 355 (429)
Q Consensus 276 hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~ 355 (429)
.|++++++++|+++.+++ .. +.+... ..+......++.+.+ ....+..++|+.+.. +...++..++.++++
T Consensus 299 sK~lg~G~piG~v~~~~~-i~-~~l~~~--~~g~~~~~~T~~~np--la~aAa~aaL~~l~~---~~~~~~~~~~~~~l~ 369 (465)
T 2yky_A 299 GKYIGGGMSFGAFGGRRD-LM-ERFDPA--RDGAFAHAGTFNNNI--LTMSAGHAALTQIYT---RQAASDLSASGDRFR 369 (465)
Confidence 488877788898877542 22 222110 000000001111111 223333444554433 346677778888888
Q ss_pred HHHHhCC-CeEEeeC-CCCceEEEEEecCCC--CC-C----HHHHHHHHHHHHhccCceecc
Q 014163 356 EGLEKTG-RFEILSK-DVGVPLVAFSLKDSS--AH-T----VFEISEGLRKKLNRFQVVYPQ 408 (429)
Q Consensus 356 ~~L~~~~-~~~~~~~-~~~~~~v~f~~~~~~--~~-~----~~~~~~~L~~~l~~~G~~~~~ 408 (429)
+.|+++. ...+... +....++.|.+.+.. .. + ..+....+.++|.++|+.+.+
T Consensus 370 ~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p 431 (465)
T 2yky_A 370 ANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAP 431 (465)
Confidence 8887652 1222111 113456666554200 00 0 012233344444499998764
No 233
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.24 E-value=1.8e-09 Score=106.23 Aligned_cols=290 Identities=14% Similarity=0.022 Sum_probs=155.3
Q ss_pred CChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRK 146 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~ 146 (429)
..+|.+.+++.+.+.......... .++.++.+.+++++..- ....++++||||+..|++.++...
T Consensus 103 H~hp~v~~Av~~q~~~~~~~~~~~----~~~~~lae~l~~~~p~~------~~v~f~~SGsEA~e~AiklAr~~t----- 167 (454)
T 4ao9_A 103 HSAPEIRDAVIEAMQGGINLTGHN----LLEGRLARLICERFPQI------EQLRFTNSGTEANLMALTAALHFT----- 167 (454)
T ss_dssp SCCHHHHHHHHHHHHTCSCCCSEE----SSHHHHHHHHHHHSTTC------SEEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhcCCCccCCc----HHHHHHHHHHHHhCCCC------CEEEEeCchHHHHHHHHHHHHhcc-----
Confidence 346888888888776533211112 23445556677776421 238899999999999999988642
Q ss_pred hcCCCCCCcEEEEcCC-CchHHHHHHHhc---CceeEEEeccCCccccCHHHHHHHhhh---CCeEEEEeeCCCcccccc
Q 014163 147 EQGKPYDKPNIVTGAN-VQVCWEKFARYF---EVELKEVKLEEGYYVMNPVKAVELVDE---NTICVAAILGSTLTGEFE 219 (429)
Q Consensus 147 ~~g~~~~~~~vi~~~~-~h~s~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~ 219 (429)
++..|+.... .|.......... +.......+.. -|++.+++.+++ ++.+|++--.....|.+.
T Consensus 168 ------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~----nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~ 237 (454)
T 4ao9_A 168 ------GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY----NDAQTARAQIERHGPEIAVVLVEPMQGASGCIP 237 (454)
T ss_dssp ------TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT----TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEE
T ss_pred ------cCCeEEEEeCCcCCccccccccccCccCCCCcccCCC----chHHHHHHHHhhcCCceEEEEeccccCCCCccC
Confidence 2346665444 454221111110 11112222211 378888888875 345566554455567776
Q ss_pred C----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCc-cccCCCCeeEEEEcCcccCCCCCCeEEEEEeCCC
Q 014163 220 D----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLE-WDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKD 294 (429)
Q Consensus 220 ~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~~d~~~~s~hK~~~~p~g~g~l~~~~~~ 294 (429)
| +++|.++|++| |+++|+|+++.|-. ..... ..+++ ..|.+++. |.++++..+|.++.+.+
T Consensus 238 p~~~fL~~lr~lc~~~------g~lLI~DEV~tGR~----G~~~a~e~~gv-~PDi~t~g--K~lggG~Piga~~~~~e- 303 (454)
T 4ao9_A 238 GQPDFLQALRESATQV------GALLVFDEVMTSRL----APHGLANKLGI-RSDLTTLG--KYIGGGMSFGAFGGRAD- 303 (454)
T ss_dssp CCHHHHHHHHHHHHHH------TCEEEEECTTGGGG----STTCHHHHHTC-CCSEEEEE--GGGGTTSSCEEEEECHH-
T ss_pred CchhhHHHHHHHHhhc------CCEEEEECCCcCCC----ccccchhccCC-CCcEEEec--cccCCCCcceeeeeHHH-
Confidence 6 99999999999 99999999996411 11110 11122 25666543 76666777888777642
Q ss_pred CcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC----CC-eEEeeC
Q 014163 295 DLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKT----GR-FEILSK 369 (429)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~----~~-~~~~~~ 369 (429)
+.+.+......... ..|+.|. .....+..++|+.+.++ +..++..++.++|++.|+++ +- .++-+
T Consensus 304 -i~~~~~~~~~~~~h---~~T~~gn--Pla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg- 373 (454)
T 4ao9_A 304 -VMALFDPRTGPLAH---SGTFNNN--VMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNALCANEGVAMQFTG- 373 (454)
T ss_dssp -HHGGGCTTTCSCCC---CCTTTTC--HHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE-
T ss_pred -HHHHHhhccCCccc---cCCCCCC--HHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee-
Confidence 22222111100000 0011111 23444555667666543 34555566666666666543 31 12221
Q ss_pred CCCceEEEEEecCCCC-------CCHHHHHHHHHHHHhccCceec
Q 014163 370 DVGVPLVAFSLKDSSA-------HTVFEISEGLRKKLNRFQVVYP 407 (429)
Q Consensus 370 ~~~~~~v~f~~~~~~~-------~~~~~~~~~L~~~l~~~G~~~~ 407 (429)
...++.+.+...+. ....++...+...|.++|+.+.
T Consensus 374 --~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~ 416 (454)
T 4ao9_A 374 --IGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSS 416 (454)
T ss_dssp --ETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECC
T ss_pred --eceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEc
Confidence 12344554432110 0113445555556669998864
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.12 E-value=7.2e-08 Score=95.09 Aligned_cols=311 Identities=11% Similarity=-0.019 Sum_probs=161.2
Q ss_pred CChHHHHHHHHHHcCcCCCC-CccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHH
Q 014163 67 WMEPECDKLVMASINKNYVD-MDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKR 145 (429)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~ 145 (429)
+.+|.+.+++.+.++.-.+. +...+ .+.+.++.+.|.+++..+.. ....++++||||+..|++.++...
T Consensus 80 h~~p~v~~Ai~~q~~~~~~~~~~~~~--~~~~~~lae~L~~~~p~~~~----~~v~f~~sGsEA~e~AlklAr~~t---- 149 (456)
T 4atq_A 80 ASDPAVVAAVQEAAAHFTHTCFMVTP--YEGYVAVTEQLNRLTPGDHA----KRTVLFNSGAEAVENAVKVARLAT---- 149 (456)
T ss_dssp TTCHHHHHHHHHHHHHCSCCTTTTSC--CHHHHHHHHHHHHHSSCSSC----EEEEEESSHHHHHHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHhhccCcccCccC--cHHHHHHHHHHHHhCCCCCC----cEEEEeCChHHHHHHHHHHHhhhh----
Confidence 34688888887666543221 11111 22233556677887743211 136789999999999999997642
Q ss_pred HhcCCCCCCcEEEEcCC-CchHHHHHHHhcC-------------ceeEEEeccC-----CccccCHHHHHHHh-------
Q 014163 146 KEQGKPYDKPNIVTGAN-VQVCWEKFARYFE-------------VELKEVKLEE-----GYYVMNPVKAVELV------- 199 (429)
Q Consensus 146 ~~~g~~~~~~~vi~~~~-~h~s~~~~~~~~G-------------~~v~~v~~~~-----~~~~~d~~~l~~~i------- 199 (429)
++..|+.... .|....-+....+ -.+..+|... ....-+.+.+++.+
T Consensus 150 -------~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 222 (456)
T 4atq_A 150 -------GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQI 222 (456)
T ss_dssp -------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHT
T ss_pred -------cCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhh
Confidence 2356665554 4543322222211 1245565421 00112233333333
Q ss_pred hhC-CeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccCCCCcc-ccCCCCeeEEEE
Q 014163 200 DEN-TICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINV 273 (429)
Q Consensus 200 ~~~-~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~ 273 (429)
..+ ..+|++--.....|.+.| +++|.++|++| |+++|+|+++.|+.- ...-+.. .+++ ..|.+++
T Consensus 223 ~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~------gillI~DEV~tG~GR--tG~~~a~e~~gv-~PDivt~ 293 (456)
T 4atq_A 223 GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK------GIVFIADEVQSGFCR--TGEWFAVDHEGV-VPDIITM 293 (456)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH------TCEEEEECTTTTTTT--TSSSSGGGGTTC-CCSEEEE
T ss_pred cCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc------CCceEecccccccCC--ccccccccccCC-CCchhhh
Confidence 223 345555444444565533 89999999999 999999999987431 1111111 1233 3788776
Q ss_pred cCcccCCCCCCeEEEEEeCCCCcccccccccCCCCCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Q 014163 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA 353 (429)
Q Consensus 274 s~hK~~~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~ 353 (429)
+ |.++++..+|.++.+++ +.+.+ .+...+ . |+.|.+ ....+..++|+.+.+++ ..++..++.++
T Consensus 294 g--K~lggg~P~~av~~~~~--i~~~~--~~~~~~---~--Tf~gnp--la~aaala~L~~i~~~~---l~~~~~~~g~~ 357 (456)
T 4atq_A 294 A--KGIAGGLPLSAITGRAD--LLDAV--HPGGLG---G--TYGGNP--VACAAALAAIDTMEQHD---LNGRARHIEEL 357 (456)
T ss_dssp C--GGGGTTSSCEEEEEEHH--HHTTS--CTTSSC---C--SSSSCH--HHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred h--hcccCcCCceeeEecHH--HHhcc--cccCCC---C--CCCCCh--HHHHhhHHHHHHHhhcc---HHHHHHHHHHH
Confidence 4 55666677788887653 11111 111111 1 111222 34445556666665554 34555556666
Q ss_pred HHHHHHhC----CC--eEEeeCCC-CceEEEEEecCCC-CCCHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEE
Q 014163 354 LREGLEKT----GR--FEILSKDV-GVPLVAFSLKDSS-AHTVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVI 423 (429)
Q Consensus 354 l~~~L~~~----~~--~~~~~~~~-~~~~v~f~~~~~~-~~~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~ 423 (429)
+.+.|+++ +. -.++.+-. ..-++.+.+..+. .....+++.++.+++.++|+.+.... .....||++
T Consensus 358 l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g----~~~~~irl~ 431 (456)
T 4atq_A 358 ALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG----TYGNVIRLL 431 (456)
T ss_dssp HHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC----TTSCEEEEC
T ss_pred HHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC----CCCCEEEEE
Confidence 66665543 21 11222111 2335566654321 12234566666667779999876431 123457875
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.05 E-value=2.6e-08 Score=98.65 Aligned_cols=322 Identities=14% Similarity=-0.005 Sum_probs=162.5
Q ss_pred CCCCCcccccccc----CCChHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchH
Q 014163 53 DGNPRLNLASFVT----TWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128 (429)
Q Consensus 53 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~ 128 (429)
+|+.++.+.++.. ...+|.+.+++.+.+++-......+....+.+.++.+.|.++...+. ....++++|||
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-----~~v~f~~sGsE 139 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS-----GRVFYTNSGSE 139 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS-----CEEEEESSHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc-----cEEEEeCchHH
Confidence 3455444434332 23568888888777665322111122223334466777888875442 13889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcC-CCchHHHHHHHhcCc-----------eeEEEeccC-----Cccc--
Q 014163 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGA-NVQVCWEKFARYFEV-----------ELKEVKLEE-----GYYV-- 189 (429)
Q Consensus 129 a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~-~~h~s~~~~~~~~G~-----------~v~~v~~~~-----~~~~-- 189 (429)
|+..|++.++..+.. .|.. ++..|+.-. ..|....-++...|- ....++... ..+.
T Consensus 140 A~e~AiKlAr~~~~~----~g~~-~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 214 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAA----EGKP-QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE 214 (473)
T ss_dssp HHHHHHHHHHHHHHH----TTCT-TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH
T ss_pred HHHHHHHHHHHHHHh----cCCC-CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh
Confidence 999999998764322 2221 234565544 455433333322221 133333211 0011
Q ss_pred -----cCHHHHHHHhhh----CCeEEEEeeCCCccccccC----hHHHHHHHHHhhhccCCCccEEeecccccccccccC
Q 014163 190 -----MNPVKAVELVDE----NTICVAAILGSTLTGEFED----VKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLY 256 (429)
Q Consensus 190 -----~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~----l~~I~~la~~~~~~~~~~~~l~vD~a~~~~~~~~~~ 256 (429)
-..+++++.+.. +..+|++--.....|.+-| +++|.++|++| |+++|+|+++.|+.- ..
T Consensus 215 ~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~------gilLI~DEV~tGfGR--tG 286 (473)
T 4e3q_A 215 EQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY------DIPVISDEVICGFGR--TG 286 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT------TCCEEEECTTTSSST--TS
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc------ceEEeccCccccCCc--cc
Confidence 113455555543 2344554444444565532 89999999999 999999999987531 11
Q ss_pred CCCcc-ccCCCCeeEEEEcCcccCCCC-CCeEEEEEeCCCCcccccccc----cCCCCCCCCCceeccCCchhHHHHHHH
Q 014163 257 PDLEW-DFRLPLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFH----INYLGSDQPTFTLNFSKGSSQIIAQYY 330 (429)
Q Consensus 257 ~~~~~-~~~~~~~d~~~~s~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~tr~~~~~~~~~~ 330 (429)
.-+.. .+++ ..|.+++. |.+.++ ..+|.++++++ +.+.+... ..+..+ .++.|.+ ....+..+
T Consensus 287 ~~fa~e~~gv-~PDi~t~~--K~l~gG~~Pl~av~~~~~--i~~~~~~~~~~~~~~~hg----~T~~Gnp--la~Aaala 355 (473)
T 4e3q_A 287 NTWGCVTYDF-TPDAIISS--KNLTAGFFPMGAVILGPE--LSKRLETAIEAIEEFPHG----FTASGHP--VGCAIALK 355 (473)
T ss_dssp SSCHHHHTTC-CCSEEEEC--GGGGTTSSCCEEEEECHH--HHHHHHHHHHHHSCCCCC----CTTTTCH--HHHHHHHH
T ss_pred chhHHHhcCC-CCChHHhc--ccccCCCCCcccccccHH--HHHHhccccccccccccC----CCCCCCc--chhhhhhh
Confidence 11111 1122 36776643 555444 67777777642 21221111 111111 0111221 33344455
Q ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhC---CCeEEeeCCCCceEEEEEecCCC----CCC-HHHHHHHHHHHHhcc
Q 014163 331 QFIRLGFEGYKNIMENCMGNARALREGLEKT---GRFEILSKDVGVPLVAFSLKDSS----AHT-VFEISEGLRKKLNRF 402 (429)
Q Consensus 331 al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~~~~----~~~-~~~~~~~L~~~l~~~ 402 (429)
+|+.+.+++ ..++..++.++|.+.|+++ +.+.-+.- ..-++.+.+..+. ..+ ...+..++.+.+.++
T Consensus 356 ~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG--~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (473)
T 4e3q_A 356 AIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGEYRG--IGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL 430 (473)
T ss_dssp HHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEEEE--ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT
T ss_pred hhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEEee--cceEEEEEEecCccccccccccHHHHHHHHHHHHHC
Confidence 555554443 4555666777777777654 43321211 2234556553211 011 123445555555599
Q ss_pred Cceecc
Q 014163 403 QVVYPQ 408 (429)
Q Consensus 403 G~~~~~ 408 (429)
|+.+++
T Consensus 431 Gll~~~ 436 (473)
T 4e3q_A 431 GLICRP 436 (473)
T ss_dssp TEECEE
T ss_pred CcEEEe
Confidence 998764
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.83 E-value=6.2e-08 Score=102.41 Aligned_cols=319 Identities=11% Similarity=-0.036 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHcCcCCCCCccChhhHHHHHHHHHHHHHhhCCCCCCCCCCCceEeCCchHHHHHHHHHHHHHHHHHHHhc
Q 014163 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQ 148 (429)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~t~g~t~a~~~al~a~~~~~~~~~~~~ 148 (429)
+|.+.+++.+.+++-.+.... ....+-..++.+.|+++++-+.. ....++++|++||..|++.+++.+... .
T Consensus 399 ~p~i~~Ai~~Q~~~l~h~~~~-~~~~~~~~~Lae~L~~~~p~~~l----~~vff~~SGSeA~E~AlK~A~r~~~~~---~ 470 (831)
T 4a0g_A 399 QAELAREMGYTAARFGHVMFP-ENVYEPALKCAELLLDGVGKGWA----SRVYFSDNGSTAIEIALKMAFRKFCVD---H 470 (831)
T ss_dssp HHHHHHHHHHHHHHHSSCCCT-TEECHHHHHHHHHHHHTTTTTTC----CEEEEESSHHHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHHHHhhccccccc-ccCCHHHHHHHHHHHHhCCCCCC----CEEEECCChhHHHHHHHHHHHHHHHhh---c
Confidence 577777776665542221100 11122223555668887763210 138899999999999999985433211 1
Q ss_pred CCCC-------CCcEEEE-cCCCchHHHHHHHhcCce---------------e-------------EEEeccCCccc---
Q 014163 149 GKPY-------DKPNIVT-GANVQVCWEKFARYFEVE---------------L-------------KEVKLEEGYYV--- 189 (429)
Q Consensus 149 g~~~-------~~~~vi~-~~~~h~s~~~~~~~~G~~---------------v-------------~~v~~~~~~~~--- 189 (429)
|... ++.+||. ....|....-++...|.. + ..+++... ++
T Consensus 471 g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~-~~~~~ 549 (831)
T 4a0g_A 471 NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES-FSEIA 549 (831)
T ss_dssp TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTT-SCCCC
T ss_pred CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcc-ccccc
Confidence 2110 2345665 444565555444443321 0 11222110 00
Q ss_pred ------cC------------------HHHHHHHhhh-------CCeEEEEeeC--CCccccccC----hHHHHHHHHHhh
Q 014163 190 ------MN------------------PVKAVELVDE-------NTICVAAILG--STLTGEFED----VKLLHDLLTKKN 232 (429)
Q Consensus 190 ------~d------------------~~~l~~~i~~-------~~~~v~~~~~--~~~tG~~~~----l~~I~~la~~~~ 232 (429)
-| .+.|++.|++ +..+.++.-| ....|.+.+ +++|.++|++|
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~- 628 (831)
T 4a0g_A 550 PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR- 628 (831)
T ss_dssp SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT-
T ss_pred cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc-
Confidence 01 3677887752 2333344444 355566643 89999999999
Q ss_pred hccCCCccEEeecccccccccccCCCCcc-ccCCCCeeEEEEcCcccCCCC-CCeEEEEEeCCCCccccccccc---CCC
Q 014163 233 EETGWDTPIHVDAASGGFIAPFLYPDLEW-DFRLPLVKSINVSGHKYGLVY-AGVGWVVWRTKDDLPDELVFHI---NYL 307 (429)
Q Consensus 233 ~~~~~~~~l~vD~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~s~hK~~~~p-~g~g~l~~~~~~~~~~~~~~~~---~~~ 307 (429)
|+++|+|+++.|+.- ....+.. .+++ ..|.+++ -|.+.++ ..+|+++++++ +.+.+.... .+.
T Consensus 629 -----gilLI~DEV~tGfGR--tG~~fa~e~~gv-~PDiitl--sK~L~gG~~Plgav~~~~~--i~~~~~~~~~~~~~~ 696 (831)
T 4a0g_A 629 -----KIPVIFDEVFTGFWR--LGVETTTELLGC-KPDIACF--AKLLTGGMVPLAVTLATDA--VFDSFSGDSKLKALL 696 (831)
T ss_dssp -----TCCEEEECTTTTTTT--TSBSSTHHHHSS-CCSEEEE--CGGGGTTSSCCEEEEECHH--HHHTTCSSCGGGSCC
T ss_pred -----CCeEEEEcCcccccc--CCCchhhHhcCC-CCcEEEE--ecccccCccCcEEEEECHH--HHHHHhcccccccce
Confidence 999999999976421 1111111 1122 2576653 3766555 46788887642 212211110 011
Q ss_pred CCCCCCceeccCCchhHHHHHHHHHHHcCHHHHHHHHHHH-HHH----HHHHHHHHHhCCCeEEeeCCCCceEEEEEecC
Q 014163 308 GSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENC-MGN----ARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382 (429)
Q Consensus 308 ~~~~~~~~~~~tr~~~~~~~~~~al~~l~~~g~~~~~~~~-~~~----~~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~ 382 (429)
.+ +++ +-+.....+..++|+.+..+.+.+.+.+. ..+ .+.+.+.+++.+.+.-+.. ...++.+.+..
T Consensus 697 hg----~T~--~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg--~Gl~~~iel~~ 768 (831)
T 4a0g_A 697 HG----HSY--SAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV--IGTLFALELKA 768 (831)
T ss_dssp CC----CTT--TTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE--ETTEEEEEEC-
T ss_pred ee----cCC--cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee--cccEEEEEEec
Confidence 11 111 11113334445555554322222222111 111 2345566777775554432 34455666542
Q ss_pred CCCC--CHHHHHHHHHHHHhccCceecccCCCCCCCceEEEEEe
Q 014163 383 SSAH--TVFEISEGLRKKLNRFQVVYPQKLPMSYPWSTKLRVIS 424 (429)
Q Consensus 383 ~~~~--~~~~~~~~L~~~l~~~G~~~~~~~~~~~~~~~~lRi~~ 424 (429)
.... ...+.+..+.+++.++|+.+++. ...||++.
T Consensus 769 ~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-------g~~lrl~p 805 (831)
T 4a0g_A 769 DASNSGYASLYAKSLLIMLREDGIFTRPL-------GNVIYLMC 805 (831)
T ss_dssp --------CHHHHHHHHHHHHTTEECCCB-------TTEEEEEC
T ss_pred CccccccchHHHHHHHHHHHHCCcEEEec-------CCEEEEEC
Confidence 1000 01123344555555999987642 24689874
No 237
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.96 E-value=85 Score=27.30 Aligned_cols=74 Identities=8% Similarity=-0.001 Sum_probs=44.1
Q ss_pred EEEcCCCch-------HHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHH
Q 014163 157 IVTGANVQV-------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT 229 (429)
Q Consensus 157 vi~~~~~h~-------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~ 229 (429)
++++...++ .+..+++..|..+..+..+.+ ..-..+.++..+..+...|++..... +.+.++.+.++
T Consensus 13 ~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~~-----~~~~~~~~~~~ 86 (293)
T 3l6u_A 13 FTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS-RISEREQILEFVHLKVDAIFITTLDD-----VYIGSAIEEAK 86 (293)
T ss_dssp EEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHHHHTTCSEEEEECSCT-----TTTHHHHHHHH
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEecCCh-----HHHHHHHHHHH
Confidence 455655543 255567778998888776533 22334556666666777776653322 23445666677
Q ss_pred HhhhccCCCccEE
Q 014163 230 KKNEETGWDTPIH 242 (429)
Q Consensus 230 ~~~~~~~~~~~l~ 242 (429)
+. +++++
T Consensus 87 ~~------~iPvV 93 (293)
T 3l6u_A 87 KA------GIPVF 93 (293)
T ss_dssp HT------TCCEE
T ss_pred Hc------CCCEE
Confidence 77 77654
No 238
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=43.85 E-value=41 Score=31.00 Aligned_cols=76 Identities=18% Similarity=0.091 Sum_probs=47.3
Q ss_pred ceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHh
Q 014163 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV 199 (429)
Q Consensus 120 ~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i 199 (429)
++-+++|..+.-+|+.+.+. | -+..|++|+.+-..-...++.+|++++.++...+ ...+.....+..
T Consensus 90 Vv~aSsGN~g~alA~~aa~~---------G---~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~-~~~~~~~~~~~~ 156 (344)
T 3vc3_A 90 LIEPTSGNMGISMAFMAAMK---------G---YKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG-MGGTVKKAYELL 156 (344)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------T---CEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGH-HHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHc---------C---CcEEEEECCCChHHHHHHHHHcCCEEEEECCCCc-chHHHHHHHHHH
Confidence 55667888888777766544 1 1247888888877777788999999988875432 222233333334
Q ss_pred hhCCeEEEE
Q 014163 200 DENTICVAA 208 (429)
Q Consensus 200 ~~~~~~v~~ 208 (429)
.+.+....+
T Consensus 157 ~~~~~~~~~ 165 (344)
T 3vc3_A 157 ENTPNAHML 165 (344)
T ss_dssp HHSTTEECC
T ss_pred hhccCceec
Confidence 444444433
No 239
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=40.00 E-value=19 Score=30.24 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=37.1
Q ss_pred CHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccc
Q 014163 191 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG 248 (429)
Q Consensus 191 d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~ 248 (429)
|.++|+++++.+...+++.. |.+..++++.+.+|++.+ -+.+|+|-..|
T Consensus 18 ~~~~l~~al~s~~~~ifll~-----g~i~~l~~~v~~lk~~~K----~v~Vh~Dli~G 66 (192)
T 3kts_A 18 NQKDMEKILELDLTYMVMLE-----THVAQLKALVKYAQAGGK----KVLLHADLVNG 66 (192)
T ss_dssp SSHHHHHHTTSSCCEEEECS-----EETTTHHHHHHHHHHTTC----EEEEEGGGEET
T ss_pred CHHHHHHHHcCCCCEEEEec-----CcHHHHHHHHHHHHHcCC----eEEEecCchhc
Confidence 56789999987776666544 456789999999999932 46778887766
No 240
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=39.89 E-value=1.8e+02 Score=25.08 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=51.5
Q ss_pred EEEEc-CCCch-HHHHHHHhcCceeEEEeccC-------CccccCHHHHHHHhhh-CCeEEEEeeCCCccccccChHHHH
Q 014163 156 NIVTG-ANVQV-CWEKFARYFEVELKEVKLEE-------GYYVMNPVKAVELVDE-NTICVAAILGSTLTGEFEDVKLLH 225 (429)
Q Consensus 156 ~vi~~-~~~h~-s~~~~~~~~G~~v~~v~~~~-------~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~I~ 225 (429)
.++++ +..+. .+....+..++++..+|+.. +.+.|++++..++++. +++.++.+|-++..-.-.+.+++.
T Consensus 162 ~i~~~GDt~~~~~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l~~~~vi~~H~~~~~~~~~~~~~l~ 241 (264)
T 3rpc_A 162 TVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIAVHMDTVNHTATSRKDVR 241 (264)
T ss_dssp CEEECCSCCSCHHHHHHHHHHCCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHCTTSEEEEESCSSSTTBCSCHHHHH
T ss_pred EEEEECCcCchHHHHHHHHHhCCCEEEEecCccccccccCCcccCHHHHHHHHHhCCcCeEEEEccccccccccCHHHHH
Confidence 45554 33343 35555666788888888751 2368898887776654 567788888876444446788899
Q ss_pred HHHHHh
Q 014163 226 DLLTKK 231 (429)
Q Consensus 226 ~la~~~ 231 (429)
+.+++.
T Consensus 242 ~~~~~~ 247 (264)
T 3rpc_A 242 KFIKGN 247 (264)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 888887
No 241
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=38.73 E-value=1.1e+02 Score=27.22 Aligned_cols=64 Identities=3% Similarity=-0.119 Sum_probs=40.1
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+..+++..|..+.....+.+ ..-..+.++..+..+...|++..... +......+.+++. +++++
T Consensus 25 i~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~~~~~~vdgiIi~~~~~-----~~~~~~~~~~~~~------giPvV 88 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADDD-IPNQLSQIENMVTKGVKVLVIASIDG-----TTLSDVLKQAGEQ------GIKVI 88 (330)
T ss_dssp HHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHHTCSEEEECCSSG-----GGGHHHHHHHHHT------TCEEE
T ss_pred HHHHHHHcCCEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEEEcCCc-----hhHHHHHHHHHHC------CCCEE
Confidence 55667778988877765432 22334566777777887777654332 2345566677778 88665
No 242
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=38.70 E-value=1.1e+02 Score=26.97 Aligned_cols=64 Identities=5% Similarity=-0.057 Sum_probs=39.5
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+..+++..|..+.....+.+ ..-..+.++..+..+...|++...... .+.+..+.+++. +++++
T Consensus 24 i~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~------~iPvV 87 (313)
T 3m9w_A 24 FVKKAESLGAKVFVQSANGN-EETQMSQIENMINRGVDVLVIIPYNGQ-----VLSNVVKEAKQE------GIKVL 87 (313)
T ss_dssp HHHHHHHTSCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEEECSSTT-----SCHHHHHHHHTT------TCEEE
T ss_pred HHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEeCCChh-----hhHHHHHHHHHC------CCeEE
Confidence 56667778988887766432 222345566666677777766544222 345566667777 87665
No 243
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.41 E-value=1.3e+02 Score=26.01 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=42.8
Q ss_pred EEEcCCCch-------HHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHH
Q 014163 157 IVTGANVQV-------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT 229 (429)
Q Consensus 157 vi~~~~~h~-------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~ 229 (429)
++++...++ .+..+++..|..+.....+.+ ..-..+.++..+..+...|++...... ......+.++
T Consensus 10 ~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~ 83 (291)
T 3l49_A 10 ITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRN-DQTQVSQIQTLIAQKPDAIIEQLGNLD-----VLNPWLQKIN 83 (291)
T ss_dssp EEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHHCCSEEEEESSCHH-----HHHHHHHHHH
T ss_pred EEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCC-HHHHHHHHHHHHHcCCCEEEEeCCChh-----hhHHHHHHHH
Confidence 455655443 255566778888887765432 222344566666677777765533211 2445566677
Q ss_pred HhhhccCCCccEE
Q 014163 230 KKNEETGWDTPIH 242 (429)
Q Consensus 230 ~~~~~~~~~~~l~ 242 (429)
+. +++++
T Consensus 84 ~~------~iPvV 90 (291)
T 3l49_A 84 DA------GIPLF 90 (291)
T ss_dssp HT------TCCEE
T ss_pred HC------CCcEE
Confidence 77 77654
No 244
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=32.21 E-value=1.5e+02 Score=25.86 Aligned_cols=66 Identities=12% Similarity=-0.016 Sum_probs=38.7
Q ss_pred HHHHHHhcCceeEEEeccC-CccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEe
Q 014163 167 WEKFARYFEVELKEVKLEE-GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV 243 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~v 243 (429)
+..+++..|..+.....+. ++..-..+.++..+..+...|++.... . +.+....+.+++. +++++.
T Consensus 25 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-~----~~~~~~~~~~~~~------giPvV~ 91 (297)
T 3rot_A 25 AKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPS-D----TAFSKSLQRANKL------NIPVIA 91 (297)
T ss_dssp HHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCC-S----STTHHHHHHHHHH------TCCEEE
T ss_pred HHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCC-H----HHHHHHHHHHHHC------CCCEEE
Confidence 5566777898888776431 112223345666666777777664332 2 2345566677777 886653
No 245
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=31.32 E-value=22 Score=34.30 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=29.2
Q ss_pred CCCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
.++..|+.++++++++-||++ ||.|++|.++-+
T Consensus 69 i~~~~Gt~~df~~lv~~aH~~------Gi~VilD~V~NH 101 (496)
T 4gqr_A 69 LCTRSGNEDEFRNMVTRCNNV------GVRIYVDAVINH 101 (496)
T ss_dssp SCBTTBCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred eCCCCCCHHHHHHHHHHHHHC------CCEEEEEEccCc
Confidence 456679999999999999999 999999998754
No 246
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=30.15 E-value=1.9e+02 Score=24.80 Aligned_cols=74 Identities=5% Similarity=-0.139 Sum_probs=42.2
Q ss_pred EEEcCCCch-------HHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHH
Q 014163 157 IVTGANVQV-------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT 229 (429)
Q Consensus 157 vi~~~~~h~-------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~ 229 (429)
++++...++ .+...++..|..+.....+.+ ..-..+.++..+..+...|++..... .+..+.++
T Consensus 12 vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~~~~l~ 82 (276)
T 3jy6_A 12 VIVANIDDYFSTELFKGISSILESRGYIGVLFDANAD-IEREKTLLRAIGSRGFDGLILQSFSN--------PQTVQEIL 82 (276)
T ss_dssp EEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTC-HHHHHHHHHHHHTTTCSEEEEESSCC--------HHHHHHHH
T ss_pred EEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEEecCCc--------HHHHHHHH
Confidence 455655443 255556777888887776543 22223445555556677766654332 45566677
Q ss_pred HhhhccCCCccEE-eec
Q 014163 230 KKNEETGWDTPIH-VDA 245 (429)
Q Consensus 230 ~~~~~~~~~~~l~-vD~ 245 (429)
+. +++++ +|.
T Consensus 83 ~~------~iPvV~i~~ 93 (276)
T 3jy6_A 83 HQ------QMPVVSVDR 93 (276)
T ss_dssp TT------SSCEEEESC
T ss_pred HC------CCCEEEEec
Confidence 77 77654 443
No 247
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=29.35 E-value=2e+02 Score=24.95 Aligned_cols=75 Identities=8% Similarity=-0.061 Sum_probs=43.2
Q ss_pred EEEcCCCch-------HHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHH
Q 014163 157 IVTGANVQV-------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT 229 (429)
Q Consensus 157 vi~~~~~h~-------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~ 229 (429)
++++...++ .+..+++..|..+..+... + ..-..+.++..+..+...|++...... ......+.++
T Consensus 7 ~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~-~~~~~~~i~~l~~~~vdgiii~~~~~~-----~~~~~~~~~~ 79 (306)
T 8abp_A 7 FLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-D-GEKTLNAIDSLAASGAKGFVICTPDPK-----LGSAIVAKAR 79 (306)
T ss_dssp EEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC-S-HHHHHHHHHHHHHTTCCEEEEECSCGG-----GHHHHHHHHH
T ss_pred EEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC-C-HHHHHHHHHHHHHcCCCEEEEeCCCch-----hhHHHHHHHH
Confidence 455555443 2555667778888766542 1 222344566667777777766543221 3455556677
Q ss_pred HhhhccCCCccEE-ee
Q 014163 230 KKNEETGWDTPIH-VD 244 (429)
Q Consensus 230 ~~~~~~~~~~~l~-vD 244 (429)
+. +++++ +|
T Consensus 80 ~~------~iPvV~~~ 89 (306)
T 8abp_A 80 GY------DMKVIAVD 89 (306)
T ss_dssp HT------TCEEEEES
T ss_pred HC------CCcEEEeC
Confidence 77 88765 44
No 248
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.29 E-value=2e+02 Score=24.95 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=37.6
Q ss_pred HHHHHHhcCceeEEEe-ccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE-ee
Q 014163 167 WEKFARYFEVELKEVK-LEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH-VD 244 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~-~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~-vD 244 (429)
+..+++..|..+..+. .+.+ ..--.+.++..+..+...|++...... ...+..+.+++. +++++ +|
T Consensus 26 i~~~a~~~g~~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~------~iPvV~~~ 93 (305)
T 3g1w_A 26 FEDAAQALNVTVEYRGAAQYD-IQEQITVLEQAIAKNPAGIAISAIDPV-----ELTDTINKAVDA------GIPIVLFD 93 (305)
T ss_dssp HHHHHHHHTCEEEEEECSSSC-HHHHHHHHHHHHHHCCSEEEECCSSTT-----TTHHHHHHHHHT------TCCEEEES
T ss_pred HHHHHHHcCCEEEEeCCCcCC-HHHHHHHHHHHHHhCCCEEEEcCCCHH-----HHHHHHHHHHHC------CCcEEEEC
Confidence 5556777898887643 2222 222334556666677777766443221 344556666677 77654 44
Q ss_pred c
Q 014163 245 A 245 (429)
Q Consensus 245 ~ 245 (429)
.
T Consensus 94 ~ 94 (305)
T 3g1w_A 94 S 94 (305)
T ss_dssp S
T ss_pred C
Confidence 3
No 249
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=28.16 E-value=2.6e+02 Score=24.03 Aligned_cols=81 Identities=9% Similarity=-0.081 Sum_probs=45.8
Q ss_pred EEEEcCCCch-------HHHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHH
Q 014163 156 NIVTGANVQV-------CWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 228 (429)
Q Consensus 156 ~vi~~~~~h~-------s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la 228 (429)
-++++...++ .+...++..|..+.....+.+ ..-..+.++..+..+...|++...... ..++..+..+.+
T Consensus 19 gvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~~~ 95 (298)
T 3tb6_A 19 GVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNN-PDNERRGLENLLSQHIDGLIVEPTKSA--LQTPNIGYYLNL 95 (298)
T ss_dssp EEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHTCCSEEEECCSSTT--SCCTTHHHHHHH
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCC-hHHHHHHHHHHHHCCCCEEEEeccccc--ccCCcHHHHHHH
Confidence 3556655443 355667778998888776533 222344556666667777766443221 122344555666
Q ss_pred HHhhhccCCCccEE-eec
Q 014163 229 TKKNEETGWDTPIH-VDA 245 (429)
Q Consensus 229 ~~~~~~~~~~~~l~-vD~ 245 (429)
++. +++++ +|.
T Consensus 96 ~~~------~iPvV~~~~ 107 (298)
T 3tb6_A 96 EKN------GIPFAMINA 107 (298)
T ss_dssp HHT------TCCEEEESS
T ss_pred Hhc------CCCEEEEec
Confidence 777 77655 443
No 250
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=27.43 E-value=67 Score=27.17 Aligned_cols=81 Identities=9% Similarity=-0.120 Sum_probs=45.2
Q ss_pred EEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCH-HHHHHHhhhCCeEEEEeeCCC---ccc----cccChHHHHHH
Q 014163 156 NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNP-VKAVELVDENTICVAAILGST---LTG----EFEDVKLLHDL 227 (429)
Q Consensus 156 ~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~-~~l~~~i~~~~~~v~~~~~~~---~tG----~~~~l~~I~~l 227 (429)
.+.+...+-.....+++. .+.+.--|-... ...|+ ..+.++..++-.++=++..+- +.| .+.+..++.++
T Consensus 78 i~~v~~~~~~~n~~a~~~-~vDII~Hp~~~~-~~~~~~~~~a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l 155 (212)
T 1v77_A 78 LIYVESNDLRVIRYSIEK-GVDAIISPWVNR-KDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKL 155 (212)
T ss_dssp EEEEECSCHHHHHHHHHT-TCSEEECTTTTS-SSCSCCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHhC-CCCEEecccccc-cCCCCCHHHHHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHH
Confidence 344444444455667777 766665554321 22333 234444444334444554432 222 36778899999
Q ss_pred HHHhhhccCCCccEEee
Q 014163 228 LTKKNEETGWDTPIHVD 244 (429)
Q Consensus 228 a~~~~~~~~~~~~l~vD 244 (429)
|+++ |+++++.
T Consensus 156 ~k~~------g~~ivis 166 (212)
T 1v77_A 156 VEKY------KVRRFLT 166 (212)
T ss_dssp HHHH------TCCEEEE
T ss_pred HHhc------CCCEEEe
Confidence 9999 9888776
No 251
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=26.90 E-value=2.6e+02 Score=24.01 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=35.3
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+..+++..|..+.....+.+ ..-..+.++..+..+...|++.. ... +.+.+..+.+++. +++++
T Consensus 23 i~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiIi~~-~~~----~~~~~~~~~~~~~------~iPvV 86 (283)
T 2ioy_A 23 AEEKAKELGYKIIVEDSQND-SSKELSNVEDLIQQKVDVLLINP-VDS----DAVVTAIKEANSK------NIPVI 86 (283)
T ss_dssp HHHHHHHHTCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECC-SST----TTTHHHHHHHHHT------TCCEE
T ss_pred HHHHHHhcCcEEEEecCCCC-HHHHHHHHHHHHHcCCCEEEEeC-Cch----hhhHHHHHHHHHC------CCeEE
Confidence 44556667888776654332 12223456666666777776643 221 2333444556677 77754
No 252
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.18 E-value=1.8e+02 Score=24.17 Aligned_cols=72 Identities=17% Similarity=0.006 Sum_probs=46.1
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhh-hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeec
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA 245 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~ 245 (429)
+....+..|.+++.+.. .+.++++.+++. .++.+|.++.-.++ ....++++.+.+++... +.++.+++=|
T Consensus 108 va~~l~~~G~~v~~LG~-----~vp~~~l~~~~~~~~~d~v~lS~~~~~--~~~~~~~~i~~l~~~~~--~~~~~v~vGG 178 (210)
T 1y80_A 108 VAMMLESGGFTVYNLGV-----DIEPGKFVEAVKKYQPDIVGMSALLTT--TMMNMKSTIDALIAAGL--RDRVKVIVGG 178 (210)
T ss_dssp HHHHHHHTTCEEEECCS-----SBCHHHHHHHHHHHCCSEEEEECCSGG--GTHHHHHHHHHHHHTTC--GGGCEEEEES
T ss_pred HHHHHHHCCCEEEECCC-----CCCHHHHHHHHHHcCCCEEEEeccccc--cHHHHHHHHHHHHhcCC--CCCCeEEEEC
Confidence 45556677888877653 367788877765 46777777664433 45668888888877610 0037777766
Q ss_pred cc
Q 014163 246 AS 247 (429)
Q Consensus 246 a~ 247 (429)
+.
T Consensus 179 ~~ 180 (210)
T 1y80_A 179 AP 180 (210)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 253
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=26.11 E-value=1.3e+02 Score=25.26 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=28.4
Q ss_pred CCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 202 NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 202 ~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
.|..|++-...+..|......++.++|++| ++.++
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h------~l~ii 193 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKH------GIKII 193 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHH------TCCEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHc------CCcEE
Confidence 566666555557789999999999999999 88775
No 254
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=25.81 E-value=1.5e+02 Score=23.68 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=50.0
Q ss_pred CcEEEE---cCCCchH----HHHHHHhcCceeEEEeccCCccccCHHHHHHHhh-hCCeEEEEeeCCCccccccChHHHH
Q 014163 154 KPNIVT---GANVQVC----WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLH 225 (429)
Q Consensus 154 ~~~vi~---~~~~h~s----~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~ 225 (429)
++.|++ ....|.. +....+..|.++..+.. ...++++.+++. .++.+|.++.-.+ .....++++.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~-----~~p~e~lv~aa~~~~~diV~lS~~~~--~~~~~~~~~i 90 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL-----RQTPEQVAMAAVQEDVDVIGVSILNG--AHLHLMKRLM 90 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS-----BCCHHHHHHHHHHTTCSEEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEeech--hhHHHHHHHH
Confidence 355543 3345652 44556677888876653 356777777665 4677776665544 4456678888
Q ss_pred HHHHHhhhccCCCccEEeecc
Q 014163 226 DLLTKKNEETGWDTPIHVDAA 246 (429)
Q Consensus 226 ~la~~~~~~~~~~~~l~vD~a 246 (429)
+.+++... .++.+++=|+
T Consensus 91 ~~L~~~g~---~~i~v~vGG~ 108 (161)
T 2yxb_A 91 AKLRELGA---DDIPVVLGGT 108 (161)
T ss_dssp HHHHHTTC---TTSCEEEEEC
T ss_pred HHHHhcCC---CCCEEEEeCC
Confidence 88877610 0366666553
No 255
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=25.77 E-value=2.9e+02 Score=24.27 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=47.5
Q ss_pred ceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHh
Q 014163 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELV 199 (429)
Q Consensus 120 ~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i 199 (429)
..+.+|++.++=.++.-.... .| ..|++..-.-......++.+|.++..+.+|-. |.+++++.+
T Consensus 31 valVTGas~GIG~aiA~~la~-------~G-----a~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~----~~~~v~~~~ 94 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFVA-------EG-----ARVFITGRRKDVLDAAIAEIGGGAVGIQADSA----NLAELDRLY 94 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHH-------TT-----CEEEEEESCHHHHHHHHHHHCTTCEEEECCTT----CHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHH-------CC-----CEEEEEECCHHHHHHHHHHcCCCeEEEEecCC----CHHHHHHHH
Confidence 566677777765544433322 22 35555444444566666777888888887642 344444444
Q ss_pred hh------CCeEEEEeeCCCcccccc
Q 014163 200 DE------NTICVAAILGSTLTGEFE 219 (429)
Q Consensus 200 ~~------~~~~v~~~~~~~~tG~~~ 219 (429)
+. +...++-+.+....+.+.
T Consensus 95 ~~~~~~~G~iDiLVNNAG~~~~~~~~ 120 (273)
T 4fgs_A 95 EKVKAEAGRIDVLFVNAGGGSMLPLG 120 (273)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCTT
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChh
Confidence 32 235566666666655553
No 256
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=25.33 E-value=3.4e+02 Score=24.29 Aligned_cols=70 Identities=9% Similarity=0.049 Sum_probs=40.7
Q ss_pred EEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHHhh---hC-CeEEEEeeCCCccccccChHHHHHHHHHh
Q 014163 156 NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD---EN-TICVAAILGSTLTGEFEDVKLLHDLLTKK 231 (429)
Q Consensus 156 ~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~---~~-~~~v~~~~~~~~tG~~~~l~~I~~la~~~ 231 (429)
.++++ |.++...++.+|++...+.....+....+.+|.+.++ ++ .++| ++-+..+ -+-+-.|+++.
T Consensus 192 ~~v~~---H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~I-f~e~~~~------~~~~~~ia~e~ 261 (312)
T 2o1e_A 192 EFITQ---HTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVI-YFEEIAS------SKVADTLASEI 261 (312)
T ss_dssp EEEES---SCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEE-ECSSCCC------HHHHHHHHHHT
T ss_pred EEEEE---CCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEE-EEeCCCC------hHHHHHHHHHh
Confidence 45554 6677788899999976553221124567776666654 33 3444 3333333 23444567888
Q ss_pred hhccCCCccE
Q 014163 232 NEETGWDTPI 241 (429)
Q Consensus 232 ~~~~~~~~~l 241 (429)
|+.+
T Consensus 262 ------g~~v 265 (312)
T 2o1e_A 262 ------GAKT 265 (312)
T ss_dssp ------CCEE
T ss_pred ------CCcE
Confidence 8765
No 257
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=25.30 E-value=3.5e+02 Score=23.81 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=39.5
Q ss_pred EEEEcCCCchHHHHHHHhcCceeEEEeccCCccccCHHHHHHH---hhh-CCeEEEEeeCCCccccccChHHHHHHHHHh
Q 014163 156 NIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVEL---VDE-NTICVAAILGSTLTGEFEDVKLLHDLLTKK 231 (429)
Q Consensus 156 ~vi~~~~~h~s~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~---i~~-~~~~v~~~~~~~~tG~~~~l~~I~~la~~~ 231 (429)
.+++ .|.++...++.+|++...+.....+....+.+|.+. +++ +.++|+.. +..+. +-+-.++++.
T Consensus 181 ~~v~---~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e-~~~~~------~~~~~la~~~ 250 (286)
T 3gi1_A 181 TFVT---QHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAE-DNVNP------KIAHAIAKST 250 (286)
T ss_dssp EEEE---EESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEEC-TTSCT------HHHHHHHHTT
T ss_pred EEEE---ECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe-CCCCh------HHHHHHHHHh
Confidence 4554 466777788999999776653211235656655554 444 34555443 43332 2333567888
Q ss_pred hhccCCCccEE
Q 014163 232 NEETGWDTPIH 242 (429)
Q Consensus 232 ~~~~~~~~~l~ 242 (429)
|+.+.
T Consensus 251 ------g~~v~ 255 (286)
T 3gi1_A 251 ------GAKVK 255 (286)
T ss_dssp ------TCEEE
T ss_pred ------CCeEE
Confidence 87764
No 258
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=24.84 E-value=3e+02 Score=23.54 Aligned_cols=64 Identities=5% Similarity=-0.067 Sum_probs=34.2
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+..+++..|..+.....+.+ ..-..+.++..+..+...|++... .. +...+..+.+++. +++++
T Consensus 24 i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~-~~----~~~~~~~~~~~~~------~iPvV 87 (290)
T 2fn9_A 24 AKQRAEQLGYEATIFDSQND-TAKESAHFDAIIAAGYDAIIFNPT-DA----DGSIANVKRAKEA------GIPVF 87 (290)
T ss_dssp HHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCS-CT----TTTHHHHHHHHHT------TCCEE
T ss_pred HHHHHHHcCCEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEecC-Ch----HHHHHHHHHHHHC------CCeEE
Confidence 45566677888776654322 122234456666666777665432 22 1233444555666 77654
No 259
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=24.75 E-value=1.7e+02 Score=27.74 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=34.1
Q ss_pred ceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEec
Q 014163 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183 (429)
Q Consensus 120 ~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~ 183 (429)
.+..++|..+.-+|..+... |. +..|++++..-..-...++.+|++++.++.
T Consensus 178 VV~aSsGNhG~AlA~aAa~~---------Gl---~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 178 LVEPTSGNTGIGLAFIAASR---------GY---RLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------TC---EEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEECCCHHHHHHHHHHHHh---------CC---EEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34445666676666554433 21 236778887666667778899999988874
No 260
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=24.59 E-value=33 Score=32.89 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=28.8
Q ss_pred CCCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
.....|+.++++++++-||++ |+.|++|.++-+
T Consensus 57 idp~~Gt~~dfk~Lv~~aH~~------Gi~VilD~V~NH 89 (448)
T 1g94_A 57 LQSRGGNRAQFIDMVNRCSAA------GVDIYVDTLINH 89 (448)
T ss_dssp SCBTTBCHHHHHHHHHHHHHT------TCEEEEEEECSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEeecc
Confidence 345679999999999999999 999999998854
No 261
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=24.23 E-value=64 Score=28.75 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=41.7
Q ss_pred CchHHHHHHHhcCceeEEEe-ccCCccccCHHHHHHHh---hh-CCeEEEEeeCCCccccccChHHHHHHHHHhhhccCC
Q 014163 163 VQVCWEKFARYFEVELKEVK-LEEGYYVMNPVKAVELV---DE-NTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGW 237 (429)
Q Consensus 163 ~h~s~~~~~~~~G~~v~~v~-~~~~~~~~d~~~l~~~i---~~-~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~ 237 (429)
.|.++...++.+|++...+. +.++ ....+.+|.+.+ ++ +.++|++ -++.+ -.-.+.|.++|++.
T Consensus 169 ~H~af~Y~~~~yGl~~~~~~~~~~~-~eps~~~l~~l~~~ik~~~v~~if~-e~~~~---~~~~~~l~~~a~~~------ 237 (282)
T 3mfq_A 169 PHDAFNYFAASYDFTLYAPQGVSTD-SEVANSDMIETVNLIIDHNIKAIFT-ESTTN---PERMKKLQEAVKAK------ 237 (282)
T ss_dssp SSSCCHHHHHHTTCEEECSSCSSSC-SCCCHHHHHHHHHHHHHHTCCEEEC-BTTSC---THHHHHHHHHHHTT------
T ss_pred ECchHHHHHHHCCCeEecccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEE-eCCCC---hHHHHHHHHHHHhc------
Confidence 46677778899999866442 2222 356666666554 43 4555543 33222 11257788889998
Q ss_pred CccEEe
Q 014163 238 DTPIHV 243 (429)
Q Consensus 238 ~~~l~v 243 (429)
|+.+.+
T Consensus 238 g~~v~~ 243 (282)
T 3mfq_A 238 GGQVEV 243 (282)
T ss_dssp SCCCEE
T ss_pred CCceEE
Confidence 876543
No 262
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=24.13 E-value=3.1e+02 Score=23.26 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=33.7
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+...++..|..+.....+.+ ..-..+.++..+..+...+++. +... +......+.+++. +++++
T Consensus 23 i~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiIi~-~~~~----~~~~~~~~~~~~~------~iPvV 86 (271)
T 2dri_A 23 AQKEADKLGYNLVVLDSQNN-PAKELANVQDLTVRGTKILLIN-PTDS----DAVGNAVKMANQA------NIPVI 86 (271)
T ss_dssp HHHHHHHHTCEEEEEECTTC-HHHHHHHHHHHTTTTEEEEEEC-CSST----TTTHHHHHHHHHT------TCCEE
T ss_pred HHHHHHHcCcEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEe-CCCh----HHHHHHHHHHHHC------CCcEE
Confidence 45556677888776654332 1222334555565666776664 3222 2333444556666 77654
No 263
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=23.18 E-value=1.8e+02 Score=26.43 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=33.6
Q ss_pred eEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc
Q 014163 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE 184 (429)
Q Consensus 121 ~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~ 184 (429)
+..++|..+.-+|..+... |. +..|++|+..-..-...++.+|++++.++.+
T Consensus 76 v~aSsGN~g~alA~aa~~~---------G~---~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 76 VESSSGNTGVSLAHLGAIR---------GY---KVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp EEECSSHHHHHHHHHHHHH---------TC---EEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEeCCCHHHHHHHHHHHHh---------CC---CEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 4445666666555554433 21 2367788876666667788999999988754
No 264
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.12 E-value=2.2e+02 Score=24.17 Aligned_cols=65 Identities=11% Similarity=-0.044 Sum_probs=37.1
Q ss_pred HHHHHHhcCceeEEEeccCC-ccccCHHHHHHHhhhC-CeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 167 WEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDEN-TICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~-~~~~d~~~l~~~i~~~-~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+..+++..|..+..+..+.+ +..-..+.++..+..+ ...|++...... ...+..+.+++. +++++
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~-----~~~~~~~~~~~~------~ipvV 88 (276)
T 3ksm_A 22 AQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE-----DLTPSVAQYRAR------NIPVL 88 (276)
T ss_dssp HHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT-----TTHHHHHHHHHT------TCCEE
T ss_pred HHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHH-----HHHHHHHHHHHC------CCcEE
Confidence 55566777888777664321 1222234566667777 777766543211 244556666777 77554
No 265
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=22.91 E-value=1.3e+02 Score=27.24 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=33.9
Q ss_pred ceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc
Q 014163 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE 184 (429)
Q Consensus 120 ~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~ 184 (429)
.+..++|..+.-+|..+... |. +..|++|...-..-...++.+|++++.++.+
T Consensus 76 vv~aSsGN~g~alA~aa~~~---------G~---~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 76 ILEPTSGNTGISLAMAARLK---------GY---RLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------TC---EEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred EEEeCCcHHHHHHHHHHHHc---------CC---cEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 44445666666555555432 21 2367788776666667788899999988753
No 266
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=22.29 E-value=1.8e+02 Score=25.19 Aligned_cols=54 Identities=6% Similarity=-0.205 Sum_probs=32.0
Q ss_pred EEEcCCCch-------HHHHHHHhcCceeEEEeccCC-ccccCHHHHHHHhhhCCeEEEEee
Q 014163 157 IVTGANVQV-------CWEKFARYFEVELKEVKLEEG-YYVMNPVKAVELVDENTICVAAIL 210 (429)
Q Consensus 157 vi~~~~~h~-------s~~~~~~~~G~~v~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~ 210 (429)
++++...++ .+..+++..|..+..+..+.. +..-..+.++..+..+...|++..
T Consensus 10 vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~ 71 (304)
T 3o1i_D 10 AIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGT 71 (304)
T ss_dssp EEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 455655443 355567778998888776531 122234456666667777776653
No 267
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=22.24 E-value=1.2e+02 Score=27.60 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=33.1
Q ss_pred ceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEec
Q 014163 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183 (429)
Q Consensus 120 ~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~ 183 (429)
.+..++|..+.-+|..+... |. +..|+++...-..-...++.+|++++.++.
T Consensus 81 vv~aSsGN~g~alA~aa~~~---------G~---~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 81 IIESTSGNTGIALCQAGAVF---------GY---RVNIAMPSTMSVERQMIMKAFGAELILTEG 132 (343)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------TC---CEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EEEECCcHHHHHHHHHHHHc---------CC---CEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 44445566666555544432 21 246778877655666678889999988875
No 268
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.10 E-value=1.3e+02 Score=23.26 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHHhh-hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEe
Q 014163 195 AVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV 243 (429)
Q Consensus 195 l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~v 243 (429)
+..++. .++.+|+++.+.. |-+++.++|+++ +++++.
T Consensus 66 ~l~a~~~~~~~~iIlt~g~~------~~~~i~~~A~~~------~ipvl~ 103 (139)
T 2ioj_A 66 LLTALEMPNVRCLILTGNLE------PVQLVLTKAEER------GVPVIL 103 (139)
T ss_dssp HHHHTTCTTEEEEEEETTCC------CCHHHHHHHHHH------TCCEEE
T ss_pred HHHHHhCCCCcEEEEcCCCC------CCHHHHHHHHHC------CCeEEE
Confidence 334455 5667777776543 467888999999 988765
No 269
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=21.96 E-value=1.6e+02 Score=26.77 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=20.6
Q ss_pred cEEEEcCCCc-----------hHHHHHHHhcCceeEEEecc
Q 014163 155 PNIVTGANVQ-----------VCWEKFARYFEVELKEVKLE 184 (429)
Q Consensus 155 ~~vi~~~~~h-----------~s~~~~~~~~G~~v~~v~~~ 184 (429)
..|+++...- ..-...++.+|++++.++-+
T Consensus 95 ~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~ 135 (341)
T 1f2d_A 95 CVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDG 135 (341)
T ss_dssp EEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCC
T ss_pred eEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCc
Confidence 3677776543 23566778899999888754
No 270
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=21.89 E-value=43 Score=32.38 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=28.5
Q ss_pred CCCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
.....|+.++++++++-||++ |+.|++|.+.-+
T Consensus 71 id~~~Gt~~df~~lv~~aH~~------Gi~VilD~V~NH 103 (483)
T 3bh4_A 71 VRTKYGTKSELQDAIGSLHSR------NVQVYGDVVLNH 103 (483)
T ss_dssp SSCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEccCc
Confidence 344568899999999999999 999999998754
No 271
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=21.85 E-value=44 Score=32.28 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=28.1
Q ss_pred CCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 212 ~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
....|+.++++++++-||++ |+.|++|.+.-+
T Consensus 74 dp~~Gt~~df~~lv~~aH~~------Gi~VilD~V~NH 105 (480)
T 1ud2_A 74 RTKYGTKAQLERAIGSLKSN------DINVYGDVVMNH 105 (480)
T ss_dssp SCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred CCCCCCHHHHHHHHHHHHHC------CCEEEEEEccCc
Confidence 34468899999999999999 999999998865
No 272
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=21.77 E-value=80 Score=24.06 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=29.1
Q ss_pred HHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeecccc
Q 014163 192 PVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASG 248 (429)
Q Consensus 192 ~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~ 248 (429)
++.+++..+..++.|+++.| ..+ +++.++|+++ |+-++ ..+.+
T Consensus 72 ~~~v~e~~~~g~k~v~~~~G-----~~~--~e~~~~a~~~------Girvv-~nC~g 114 (122)
T 3ff4_A 72 LSEYNYILSLKPKRVIFNPG-----TEN--EELEEILSEN------GIEPV-IGCTL 114 (122)
T ss_dssp GGGHHHHHHHCCSEEEECTT-----CCC--HHHHHHHHHT------TCEEE-ESCHH
T ss_pred HHHHHHHHhcCCCEEEECCC-----CCh--HHHHHHHHHc------CCeEE-CCcCe
Confidence 34456666667777766554 332 6999999999 99877 44443
No 273
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=21.76 E-value=97 Score=28.04 Aligned_cols=30 Identities=7% Similarity=-0.028 Sum_probs=22.9
Q ss_pred cEEEEcCCC-chHHHHHHHhcCceeEEEecc
Q 014163 155 PNIVTGANV-QVCWEKFARYFEVELKEVKLE 184 (429)
Q Consensus 155 ~~vi~~~~~-h~s~~~~~~~~G~~v~~v~~~ 184 (429)
..|++++.. -..-...++.+|++++.++-+
T Consensus 98 ~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~ 128 (325)
T 1j0a_A 98 AILVLRGKEELKGNYLLDKIMGIETRVYDAK 128 (325)
T ss_dssp EEEEEESCCCSCHHHHHHHHTTCEEEEESCC
T ss_pred EEEEECCCCCCCchHHHHHHCCCEEEEeCcc
Confidence 367788777 556667788999999988754
No 274
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=21.57 E-value=2.6e+02 Score=23.58 Aligned_cols=63 Identities=11% Similarity=-0.118 Sum_probs=35.7
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~ 242 (429)
+..+++..|..+..+..+.+ ..-..+.++..+..+...|++.... +.. .+..+.+++. +++++
T Consensus 24 i~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~-~~~-----~~~~~~~~~~------~iPvV 86 (272)
T 3o74_A 24 LEQGARARGYQLLIASSDDQ-PDSERQLQQLFRARRCDALFVASCL-PPE-----DDSYRELQDK------GLPVI 86 (272)
T ss_dssp HHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCCC-CSS-----CCHHHHHHHT------TCCEE
T ss_pred HHHHHHHCCCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEecCc-ccc-----HHHHHHHHHc------CCCEE
Confidence 55567778988888776532 2222344555566677777664332 211 2334556667 77665
No 275
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=21.57 E-value=47 Score=31.68 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=26.0
Q ss_pred CCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 212 ~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
+...|+.++++++++-||++ |+.|++|.+.-+
T Consensus 63 dp~~Gt~~df~~lv~~aH~~------Gi~VilD~V~NH 94 (441)
T 1lwj_A 63 KAEYGSEREFKEMIEAFHDS------GIKVVLDLPIHH 94 (441)
T ss_dssp CTTTCCHHHHHHHHHHHHHT------TCEEEEEECTTB
T ss_pred CcccCCHHHHHHHHHHHHHC------CCEEEEEeCCCc
Confidence 44568888899999999999 999999987643
No 276
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=21.43 E-value=46 Score=31.74 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=27.7
Q ss_pred CCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 212 ~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
+...|..++++++++-||++ |+-|++|.+.-+
T Consensus 80 d~~~Gt~~df~~lv~~~H~~------Gi~VilD~V~NH 111 (435)
T 1mxg_A 80 ETRFGSKEELVRLIQTAHAY------GIKVIADVVINH 111 (435)
T ss_dssp SCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSB
T ss_pred CCCCCCHHHHHHHHHHHHHC------CCEEEEEECccc
Confidence 34568899999999999999 999999998754
No 277
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=21.13 E-value=46 Score=32.54 Aligned_cols=32 Identities=9% Similarity=-0.073 Sum_probs=28.2
Q ss_pred CCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 212 STLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 212 ~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
....|+.++++++++-||++ |+.|++|.+.-+
T Consensus 75 dp~~Gt~~dfk~Lv~~aH~~------Gi~VilD~V~NH 106 (515)
T 1hvx_A 75 RTKYGTKAQYLQAIQAAHAA------GMQVYADVVFDH 106 (515)
T ss_dssp SCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred CCCCCCHHHHHHHHHHHHHC------CCEEEEEEecCC
Confidence 34468899999999999999 999999998865
No 278
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=21.12 E-value=47 Score=32.16 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=28.5
Q ss_pred CCCccccccChHHHHHHHHHhhhccCCCccEEeeccccc
Q 014163 211 GSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGG 249 (429)
Q Consensus 211 ~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~a~~~ 249 (429)
.....|+.++++++++-||++ |+.|++|.+.-+
T Consensus 75 idp~~Gt~~df~~Lv~~aH~~------Gi~VilD~V~NH 107 (485)
T 1wpc_A 75 VRTKYGTRSQLQAAVTSLKNN------GIQVYGDVVMNH 107 (485)
T ss_dssp SSCSSCCHHHHHHHHHHHHHT------TCEEEEEECCSE
T ss_pred cCCCCCCHHHHHHHHHHHHHC------CCEEEEEEeccc
Confidence 344568899999999999999 999999998754
No 279
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=20.90 E-value=3.2e+02 Score=23.59 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=35.7
Q ss_pred HHHHHHhcCc-eeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEE-ee
Q 014163 167 WEKFARYFEV-ELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH-VD 244 (429)
Q Consensus 167 ~~~~~~~~G~-~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~-vD 244 (429)
+..+++..|. .+.......+ .....+.++..+..+...|++... ... ...++.+.+++. +++++ +|
T Consensus 24 i~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~vdgiii~~~-~~~----~~~~~~~~~~~~------~iPvV~~~ 91 (309)
T 2fvy_A 24 IEQDAKAAPDVQLLMNDSQND-QSKQNDQIDVLLAKGVKALAINLV-DPA----AAGTVIEKARGQ------NVPVVFFN 91 (309)
T ss_dssp HHHHHHTCTTEEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCS-SGG----GHHHHHHHHHTT------TCCEEEES
T ss_pred HHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHcCCCEEEEeCC-Ccc----hhHHHHHHHHHC------CCcEEEec
Confidence 4556667786 7766654322 222234456666667777665432 221 234455556667 77654 44
Q ss_pred c
Q 014163 245 A 245 (429)
Q Consensus 245 ~ 245 (429)
.
T Consensus 92 ~ 92 (309)
T 2fvy_A 92 K 92 (309)
T ss_dssp S
T ss_pred C
Confidence 4
No 280
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.77 E-value=1.8e+02 Score=24.48 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=45.0
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhh-hCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccEEeec
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVD-ENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA 245 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l~vD~ 245 (429)
+....+..|.++..+.. .+.++++.+++. .++.+|.++.....+.....++++.+.+++.... .++.+++=|
T Consensus 112 v~~~l~~~G~~Vi~LG~-----~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~--~~v~v~vGG 184 (215)
T 3ezx_A 112 VTTMLGANGFQIVDLGV-----DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLR--DSVKCMFGG 184 (215)
T ss_dssp HHHHHHHTSCEEEECCS-----SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCG--GGSEEEEES
T ss_pred HHHHHHHCCCeEEEcCC-----CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCC--CCCEEEEEC
Confidence 55566778988877653 256777755554 4677777733333445666788888888887100 035666655
Q ss_pred c
Q 014163 246 A 246 (429)
Q Consensus 246 a 246 (429)
+
T Consensus 185 ~ 185 (215)
T 3ezx_A 185 A 185 (215)
T ss_dssp S
T ss_pred C
Confidence 4
No 281
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=20.75 E-value=2e+02 Score=25.66 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=33.5
Q ss_pred ceEeCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCCCchHHHHHHHhcCceeEEEecc
Q 014163 120 GVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLE 184 (429)
Q Consensus 120 ~~~t~g~t~a~~~al~a~~~~~~~~~~~~g~~~~~~~vi~~~~~h~s~~~~~~~~G~~v~~v~~~ 184 (429)
.+..++|..+.-+|..+... |. +..|++|...-..-...++.+|++++.++.+
T Consensus 70 vv~assGN~g~alA~~a~~~---------G~---~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 70 ILEPTSGNTGIALAMVCAAR---------GY---RCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp EEEECSSHHHHHHHHHHHHH---------TC---EEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EEEeCCCHHHHHHHHHHHHc---------CC---cEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 44455666666555554322 21 2367788776555666778899999988753
No 282
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.51 E-value=3.7e+02 Score=23.78 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=39.4
Q ss_pred HHHHHHhcCceeEEEeccCCccccCHHHHHHHhhhCCeEEEEeeCCCccccccChHHHHHHHHHhhhccCCCccE-Eeec
Q 014163 167 WEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPI-HVDA 245 (429)
Q Consensus 167 ~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~I~~la~~~~~~~~~~~~l-~vD~ 245 (429)
+...++..|..+.....+.+ ..-..+.++..+..+...|++.... . +-+.+.+++++. ++++ .+|.
T Consensus 85 i~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~-~-----~~~~~~~~~~~~------~iPvV~~~~ 151 (338)
T 3dbi_A 85 AARMAEEKGRQLLLADGKHS-AEEERQAIQYLLDLRCDAIMIYPRF-L-----SVDEIDDIIDAH------SQPIMVLNR 151 (338)
T ss_dssp HHHHHHHTTCEEEEEECTTS-HHHHHHHHHHHHHTTCSEEEECCSS-S-----CHHHHHHHHHHC------SSCEEEESS
T ss_pred HHHHHHHCCCEEEEEeCCCC-hHHHHHHHHHHHhCCCCEEEEeCCC-C-----ChHHHHHHHHcC------CCCEEEEcC
Confidence 55667778988887765432 2222334555666677777664322 1 235677888888 8764 4454
Done!