RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014163
(429 letters)
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 506 bits (1304), Expect = e-178
Identities = 330/398 (82%), Positives = 365/398 (91%)
Query: 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
MV+S ++S + STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNL
Sbjct: 1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNL 60
Query: 61 ASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVG 120
ASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVG
Sbjct: 61 ASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVG 120
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKE 180
VGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYFEVELKE
Sbjct: 121 VGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180
Query: 181 VKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
VKL EGYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKLL+DLL +KN+ETGWDTP
Sbjct: 181 VKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 241 IHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDEL 300
IHVDAASGGFIAPFLYP+LEWDFRLPLVKSINVSGHKYGLVYAG+GWV+WR K+DLP+EL
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 301 VFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEK 360
+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC N LREGLEK
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK 360
Query: 361 TGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKK 398
T RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR+
Sbjct: 361 TERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRY 398
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 489 bits (1260), Expect = e-172
Identities = 181/388 (46%), Positives = 252/388 (64%), Gaps = 6/388 (1%)
Query: 16 STFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKL 75
S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW + KL
Sbjct: 2 SRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKL 61
Query: 76 VMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGL 135
+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA ML G+
Sbjct: 62 MDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGM 121
Query: 136 AFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKA 195
A K +W+++ + GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G M+P +
Sbjct: 122 AMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRM 180
Query: 196 VELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL 255
+E DENTI V G T TG +E + LHD L K +TG D +H+DAASGGF+APF+
Sbjct: 181 IEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFV 240
Query: 256 YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT 315
PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++YLG TF
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFA 300
Query: 316 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVG 372
+NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G
Sbjct: 301 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 360
Query: 373 VPLVAFSLKDSS--AHTVFEISEGLRKK 398
+P V F LKD +T++++SE LR +
Sbjct: 361 IPAVCFKLKDGEDPGYTLYDLSERLRLR 388
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 431 bits (1111), Expect = e-150
Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 31/376 (8%)
Query: 32 MPDNSMPKEAAYQVINDELMLDGNPR-LNLASFVTTWMEPECDKLVMASINKNYVDMDEY 90
M + + ++ + + LD N+ + + + P K+V + N D +
Sbjct: 5 MQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLF 64
Query: 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
T L+ + V ++ L N A G G +EA ++A K W++KR++
Sbjct: 65 KGTKLLEEKAVALLGSLLNNK-----DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119
Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTI-CVAAI 209
+ P I+ +EK ++E ++E Y ++ + V++ + + I
Sbjct: 120 KNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKED-YTIDEKFVKDAVEDYDVDGIIGI 178
Query: 210 LGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYP-------DLEWD 262
G+T G ++++ L + + N IHVDAA GG + PFL + ++D
Sbjct: 179 AGTTELGTIDNIEELSKIAKENN------IYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD 232
Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS 322
F L V SI + HK G G ++++ L YL + T+ ++
Sbjct: 233 FSLG-VDSITIDPHKMGHCPIPSGGILFKDI-GYKRYLDVDAPYLTETRQA-TILGTRVG 289
Query: 323 SQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382
Y LG EG + I+ CM N L + L++ F+ + + + + +VA +D
Sbjct: 290 FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPI-LNIVAIEDED 347
Query: 383 SSAHTVFEISEGLRKK 398
E+ + LR +
Sbjct: 348 -----YKEVCKKLRDR 358
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 405 bits (1043), Expect = e-138
Identities = 84/399 (21%), Positives = 146/399 (36%), Gaps = 30/399 (7%)
Query: 8 TDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTW 67
R + A +PR +P + E A + AS
Sbjct: 52 ASLRSQIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGAAESPAWRDG----YASGAVYH 107
Query: 68 MEPECDKLV----MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGT 123
+ + N + D +P T + + V M AH+ A T G T
Sbjct: 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVT 166
Query: 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKL 183
G +E+++LA ++ + K P V + ++K A+YF ++L L
Sbjct: 167 SGGTESLLLAMKTYRDWARAT-----KGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL 221
Query: 184 EEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHV 243
+ Y + E + NT+ VA G + + + L + HV
Sbjct: 222 DA-DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG------IGCHV 274
Query: 244 DAASGGFIAPFL----YPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDE 299
DA GGFI P+ YP +DFRL V S++ HKYG G +++R D L +
Sbjct: 275 DACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334
Query: 300 LVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLE 359
++ G + T S+ + + + LG EGY + + A L+ G+
Sbjct: 335 YFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVR 394
Query: 360 KTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKK 398
+I +G PL ++ S ++++ E + +
Sbjct: 395 AIPSLKI----LGDPLWVIAVA-SDELNIYQVMEEMAGR 428
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 395 bits (1015), Expect = e-134
Identities = 83/389 (21%), Positives = 167/389 (42%), Gaps = 28/389 (7%)
Query: 21 RYVRAAIPRFKMPDNSMPKEAAYQVIND--ELMLDGNPRLNLASFVTTWMEPECDKLVMA 78
R + ++P N +P++ + +N +L+ + S + L
Sbjct: 27 RSDSQLMNFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTI 86
Query: 79 SINK----NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAG 134
+ K N + D +P ++++ V+M+ +FN P T G T G +E+++LA
Sbjct: 87 AYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAP---SDTGCGTTTSGGTESLLLAC 143
Query: 135 LAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVMNPVK 194
L+ K R +P I+ ++K A YF ++L+ V+L+ Y ++ K
Sbjct: 144 LSAKMYALHHRG-----ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGK 198
Query: 195 AVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPF 254
+ +++NT+ + + G +D++ L + K + P+HVD+ G FI F
Sbjct: 199 VKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQK------YKLPLHVDSCLGSFIVSF 252
Query: 255 LYPDL-----EWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGS 309
+ DFR+P V SI+ HKYG G +++R D + + + G
Sbjct: 253 MEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGG 312
Query: 310 DQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK 369
+ TL S+ + ++ + + +G GY + +G A ++ +++ +
Sbjct: 313 LYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMG 372
Query: 370 DVGVPLVAFSLKDSSAHTVFEISEGLRKK 398
+ +++FS K + E+S+ L KK
Sbjct: 373 NPRYSVISFSSKT---LNIHELSDRLSKK 398
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 98.2 bits (244), Expect = 2e-22
Identities = 42/322 (13%), Positives = 94/322 (29%), Gaps = 49/322 (15%)
Query: 91 PVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGK 150
+ + ++ F + T S+ + L+ RK
Sbjct: 126 SGASIMYALTNKILESFFKQL---GLNVHAIATPISTGMSISLCLSAARKK--------- 173
Query: 151 PYDKPNIVTGANVQVCWEKFARYFEVELKEV--KLEEGYYVMNPVKAVELVDE-----NT 203
Y ++ K + + ++ V L+ + + + N
Sbjct: 174 -YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR 232
Query: 204 ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFL-YPDLEWD 262
CV + L +D+ + + +D P ++ A +L +
Sbjct: 233 PCVLSTLTFFPPRNSDDIVEIAKICEN------YDIPHIINGAYAIQNNYYLEKLKKAFK 286
Query: 263 FRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGS 322
+R+ ++ S K L G G V + + + P +
Sbjct: 287 YRVD---AVVSSSDKNLLTPIGGGLVYSTDAEFI--------KEISLSYPG-----RASA 330
Query: 323 SQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD 382
+ ++ + +G + Y +++N + + L E L LSK G +
Sbjct: 331 TPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND------LSKKTGGKFLDVESPI 384
Query: 383 SSAHTVFEISEGLRKKLNRFQV 404
+S +V + KL +V
Sbjct: 385 ASCISVNSDPVEIAAKLYNLRV 406
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 90.6 bits (225), Expect = 8e-20
Identities = 72/415 (17%), Positives = 143/415 (34%), Gaps = 58/415 (13%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD----GNPRLNLASFVTTWMEPE-CDKLV 76
Y+RA +P P++ ++ + I +M +P A + P ++
Sbjct: 42 YLRAQLPES-APEDPDSWDSIFGDIERIIMPGVVHWQSPH-MHAYYPALTSWPSLLGDML 99
Query: 77 MASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP-----VADDKTAVGVGTVGSSEAIM 131
+IN P TEL+ ++ +A + P GV SE+ +
Sbjct: 100 ADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTL 159
Query: 132 LAGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVELKEVKLEE 185
+A LA ++ + K D+ + EK V++K + +++
Sbjct: 160 IALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDD 219
Query: 186 GYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDT 239
+ + + ++E+ + V A LG+T F+ + L + E W
Sbjct: 220 NF-SLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPIC---AREGLW-- 273
Query: 240 PIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPD 298
+H+DAA G FL P+ + + S + K+ +V+ + K L
Sbjct: 274 -LHIDAAYAG--TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQ 330
Query: 299 ELVFHINYLGSDQPTFTLNFSKGSSQ------------IIAQYYQFIRLGFEGYKNIMEN 346
+ YL +F +I + G + + + +
Sbjct: 331 TFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF------GVKNLQAHVRH 384
Query: 347 CMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR 401
A+ + FEI +K + LV F LK ++ T E + K++ +
Sbjct: 385 GTEMAKYFESLVRNDPSFEIPAK-RHLGLVVFRLKGPNSLT-----ENVLKEIAK 433
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 85.5 bits (212), Expect = 3e-18
Identities = 74/417 (17%), Positives = 140/417 (33%), Gaps = 64/417 (15%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
Y++ IP P+ + Q I +M VT W P+
Sbjct: 37 YLKPLIPDA-APEKPEKWQDVMQDIERVIMPG----------VTHWHSPKFHAYFPTANS 85
Query: 73 -----DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGT 123
++ +I P TEL+ ++ + + P GV
Sbjct: 86 YPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQ 145
Query: 124 VGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPN------IVTGANVQVCWEKFARYFEVE 177
+SE+ ++A L K K ++ KE +D+ E+ V+
Sbjct: 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVK 205
Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
L+ V+ E + M + ++++ LG+T + F+ + +
Sbjct: 206 LRSVQSEN--HRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG--- 260
Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW 290
N+ W IHVDAA G + F+ P+ + + S N + HK+ LV +
Sbjct: 261 NKHNLW---IHVDAAYAG--SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWL 315
Query: 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ------IIAQYYQFIRLGFEGYKNIM 344
+ + + YL D ++ + ++ G E + +
Sbjct: 316 KDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHI 375
Query: 345 ENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR 401
A+ + RFE+ ++ + + LV F LK S+ E L K++N
Sbjct: 376 RRHCNFAKQFGDLCVADSRFELAAE-INMGLVCFRLKGSNERN-----EALLKRING 426
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 84.4 bits (209), Expect = 7e-18
Identities = 80/424 (18%), Positives = 138/424 (32%), Gaps = 75/424 (17%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
Y+R IP P E Q + +M VT W P
Sbjct: 37 YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85
Query: 73 -----DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTP----VADDKTAVGVGT 123
++ +I P TEL+ ++ + + P + GV
Sbjct: 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
Query: 124 VGSSEAIMLAGLA----FKRKWQQKRKEQGKPYDKPNIV--TGANVQVCWEKFARYFEVE 177
+SEA ++A LA R+ Q + +V E+ V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
LK + + + M E ++ + V A LG+T F+++ + +
Sbjct: 206 LKAIPSDGKF-AMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC--- 261
Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVW 290
+EE W +HVDAA G + F+ P+ + S N + HK+ LV +
Sbjct: 262 HEEDIW---LHVDAAYAG--SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV 316
Query: 291 RTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIR-------------LGF 337
+ + DL YL L Q+ R G
Sbjct: 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL-----PLGRRFRSLKMWFVFRMYGV 371
Query: 338 EGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK 397
+G + + + + + + RFE+ ++ V + LV F LK S E L +
Sbjct: 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE-VTLGLVCFRLKGSDGLN-----EALLE 425
Query: 398 KLNR 401
++N
Sbjct: 426 RINS 429
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 76.2 bits (188), Expect = 4e-15
Identities = 61/418 (14%), Positives = 144/418 (34%), Gaps = 67/418 (16%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPEC--------- 72
+ AI + + + P ++ + + + P+C
Sbjct: 63 ALEDAINAVDLDNKNAPLKSVIDDVAELVA----------KNAIFTQHPDCIAHLHTPPL 112
Query: 73 ------DKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGS 126
+ ++A++N++ D+ T ++ + VN + ++ + A G+ T G
Sbjct: 113 MPAVAAE-AMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS----EKADGIFTSGG 167
Query: 127 SEAIMLAGLA-----FKRKWQQKRKEQGKPYDKPN--IVTGANVQVCWEKFARYF---EV 176
+++ + + + ++ G P IV +K A + E
Sbjct: 168 TQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEK 227
Query: 177 ELKEVKLEEGYYVMNPV---KAV-ELVDENTI--CVAAILGSTLTGEFEDVKLLHDLLTK 230
+ V M+ + + + E I + G+T G +D+ + D+
Sbjct: 228 AVMTVDANAD-GTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA-- 284
Query: 231 KNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVV 289
+ W +HVD A GG + + + + SI+V HK G ++
Sbjct: 285 -VKHDMW---MHVDGAYGG---ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALL 337
Query: 290 WRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQ------IIAQYYQFIRLGFEGYKNI 343
K + L+ H +YL + N S + + +G + ++
Sbjct: 338 VNDKSNF-KFLLHHADYLNREHDELP-NLVDKSIATTKRFDALKVFMTMQNVGPKALGDM 395
Query: 344 MENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR 401
++ + + + + +FE+L+ + + V F +A + E+++ LR +
Sbjct: 396 YDHLLAQTLEVADMIRTNDQFELLA-EPSLSTVLFRATHETA-DLDELNKALRLEALT 451
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 72.0 bits (177), Expect = 9e-14
Identities = 63/381 (16%), Positives = 126/381 (33%), Gaps = 56/381 (14%)
Query: 22 YVRAAIPRF--KMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWM 68
+ + F ++ D+ E D L G+PR L++ W+
Sbjct: 54 QLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWL 113
Query: 69 EPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
++ N N + PV ++ + + + K G+ + G +
Sbjct: 114 --------TSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWS---SKDGDGIFSPGGAI 162
Query: 129 AIMLAGLAFKRKWQQKRKEQGKP-YDKPNIVTGANVQVCWEKFARYF---EVELKEVKLE 184
+ M + +A + K+ + K +G K + T +K + +K
Sbjct: 163 SNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN 222
Query: 185 EGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWD 238
E + P + E V A G+T+ G F+ ++ + D+ + W
Sbjct: 223 E-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC---EKYNLW- 277
Query: 239 TPIHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLP 297
+HVDAA GG + + S+ + HK V ++ + K L
Sbjct: 278 --LHVDAAWGG--GLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQ 333
Query: 298 DELVFHINYLGSDQPTFTLNFSKGSSQIIAQ----------YYQFIRLGFEGYKNIMENC 347
YL + +++ G I Q + + G G++N + C
Sbjct: 334 GCNQMCAGYLFQPDKQYDVSYDTGDKAI--QCGRHVDIFKFWLMWKAKGTVGFENQINKC 391
Query: 348 MGNARALREGLEKTGRFEILS 368
+ A L ++ FE++
Sbjct: 392 LELAEYLYAKIKNREEFEMVF 412
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 71.6 bits (176), Expect = 1e-13
Identities = 63/416 (15%), Positives = 132/416 (31%), Gaps = 61/416 (14%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLD---GNPR--------LNLASFVTTWMEP 70
++ + ++ ++ + + G+PR L+ + +
Sbjct: 73 ELKQLLD-LELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSGLDPHALAGRII-- 129
Query: 71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
S+N + + PV ++ + + L D G+ G S +
Sbjct: 130 ------TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD-----GIFCPGGSISN 178
Query: 131 MLAGLAFKRKWQQKRKEQG-KPYDKPNIVTGANVQVCWEKFARYF---EVELKEVKLEEG 186
M A + + K++G + + T +K A + ++ VK +E
Sbjct: 179 MYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADER 238
Query: 187 YYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTP 240
M P + V+A G+T+ G F+ ++ + D+ W
Sbjct: 239 G-KMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVC---QRHGLW--- 291
Query: 241 IHVDAASGGFIAPFLYPDLEWDFR-LPLVKSINVSGHKYGLVYAGVGWVVWRTKDD-LPD 298
+HVDAA GG + L + S+ + HK ++ + + L
Sbjct: 292 LHVDAAWGG--SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349
Query: 299 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQ----------YYQFIRLGFEGYKNIMENCM 348
+YL + + G + Q + + G +G + ++
Sbjct: 350 CHGSQASYLFQQDKFYDVALDTGDKVV--QCGRRVDCLKLWLMWKAQGDQGLERRIDQAF 407
Query: 349 GNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRK--KLNRF 402
AR L E ++K FE++ + V F S E + + K+
Sbjct: 408 VLARYLVEEMKKREGFELVM-EPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPV 462
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 7e-09
Identities = 54/451 (11%), Positives = 112/451 (24%), Gaps = 127/451 (28%)
Query: 2 VISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLA 61
++S E D I+ D ++ +L + +
Sbjct: 45 ILSKEEID--HII----------------MSKD---AVSGTLRLF--WTLLSKQEEM-VQ 80
Query: 62 SFVTTWMEPECDKLVMASINKNYVDMDEYP-VTTELQNRCVNMIAHLFNTPVADDKTAVG 120
FV + L M+ I P + T + + L+N K
Sbjct: 81 KFVEEVLRINYKFL-MSPIKTEQRQ----PSMMTRMYIEQRD---RLYNDNQVFAK---- 128
Query: 121 VGTVGSSEAIMLAGLAFKRKWQQKRKEQ----------GKP------YDKPNIVTGANVQ 164
V + L ++ + R + GK + + +
Sbjct: 129 -YNVSRLQPY----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 165 VCWEKFARYFEVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKL- 223
+ W E L++ Y ++P D S + ++
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDH---------SSNIKLRIHSIQAE 233
Query: 224 LHDLLTKKNEETG-------WDTPIHVDAASGGF--------------IAPFLYPDLEWD 262
L LL K E + +A F + FL
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQN-AKAWNA----FNLSCKILLTTRFKQVTDFLSAATT-- 286
Query: 263 FRLPLVKSINVSGHKYGL-VYAGVGWVVWRTKDDLPDELV----FHINYLGSDQPTFTLN 317
+ L + + DLP E++ ++ + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIAE-------S 336
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFE---ILSKDVGVP 374
G + ++ + + I+E+ + L + F+ + +P
Sbjct: 337 IRDGLATW--DNWK--HVNCDKLTTIIESSL---NVLEPAEYRK-MFDRLSVFPPSAHIP 388
Query: 375 LVAFSL--KDSSAHTVFEISEGLRKK--LNR 401
+ SL D V + L K + +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Score = 46.0 bits (108), Expect = 2e-05
Identities = 52/371 (14%), Positives = 112/371 (30%), Gaps = 136/371 (36%)
Query: 6 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRL------N 59
T + + +L +Y+ +P+E L NPR +
Sbjct: 299 TPDEVKSLLL-----KYL-------DCRPQDLPREV----------LTTNPRRLSIIAES 336
Query: 60 LASFVTTW---MEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLF--NTPVAD 114
+ + TW CDKL +I ++ +++ E E + + + ++ +F + +
Sbjct: 337 IRDGLATWDNWKHVNCDKL--TTIIESSLNVLE---PAEYR-KMFDRLS-VFPPSAHI-- 387
Query: 115 DKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF 174
I+L+ + W D +V K +Y
Sbjct: 388 -------------PTILLSLI-----WFDV-----IKSDVMVVV---------NKLHKYS 415
Query: 175 EVELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD-LLTKKNE 233
VE K+ K E + + + L + E+ LH ++ N
Sbjct: 416 LVE-KQPK-ESTISIPS------------------IYLELKVKLENEYALHRSIVDHYNI 455
Query: 234 ETGWD----TPIHVDAASGGFIA---------------PFLYPDLEWDFRLPLVKSINVS 274
+D P ++D I ++ D + ++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------LEQ---- 505
Query: 275 GHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFT------LNFSKGSSQ--II 326
K + + W + + +L F+ Y+ + P + L+F + I
Sbjct: 506 --K--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 327 AQYYQFIRLGF 337
++Y +R+
Sbjct: 562 SKYTDLLRIAL 572
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 48.1 bits (114), Expect = 3e-06
Identities = 36/267 (13%), Positives = 85/267 (31%), Gaps = 36/267 (13%)
Query: 100 CVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVT 159
+++ ++ + V + + ++ L L + K + + I+
Sbjct: 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKY----------IIW 149
Query: 160 GANVQVCWEKFARY--FEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGST 213
Q K FE + E LE + + E + +C+ +
Sbjct: 150 PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACF 209
Query: 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV 273
+ ++ L + +D P V+ A G + ++ ++ R+ + +
Sbjct: 210 APRVPDRLEELAVICAN------YDIPHVVNNAYGLQSSKCMH-LIQQGARVGRIDAFVQ 262
Query: 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333
S K +V G G ++ + ++ S P+ + + S
Sbjct: 263 SLDKNFMVPVG-GAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLS----------- 310
Query: 334 RLGFEGYKNIMENCMGNARALREGLEK 360
LG GY+ +++ L L+K
Sbjct: 311 -LGCSGYRKLLKERKEMFVYLSTQLKK 336
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 46.6 bits (110), Expect = 1e-05
Identities = 39/267 (14%), Positives = 82/267 (30%), Gaps = 36/267 (13%)
Query: 100 CVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVT 159
+++ + V + + ++ L L + K + + I+
Sbjct: 118 TNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKY----------IIW 167
Query: 160 GANVQVCWEKFARY--FEVELKEVKLEEGYYVMNPVKAVELVDE----NTICVAAILGST 213
Q K FE + E LE + V E +C+ +
Sbjct: 168 PRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCF 227
Query: 214 LTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV 273
+ ++ L + +D P V+ A G + ++ ++ R+ + +
Sbjct: 228 APRVPDRLEELAVICAN------YDIPHIVNNAYGVQSSKCMH-LIQQGARVGRIDAFVQ 280
Query: 274 SGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFI 333
S K +V G G ++ D E+ S P+ + + S
Sbjct: 281 SLDKNFMVPVG-GAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLS----------- 328
Query: 334 RLGFEGYKNIMENCMGNARALREGLEK 360
LG GYK +++ L ++K
Sbjct: 329 -LGSNGYKKLLKERKEMFSYLSNQIKK 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.026
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 25/127 (19%)
Query: 289 VWRTKDD-LPDELVFHINYLGSDQPT-FTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMEN 346
VW D+ D F I + + P T++F + I + Y + ++ I++
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-----FETIVDG 1699
Query: 347 CMGNARALREGLEKTGRFEILSKDVGV--------P-LVAFSLKDSSAHTVFEI--SEGL 395
+ + +E E + + + G+ P L A FE S+GL
Sbjct: 1700 KLKTEKIFKEINEHSTSY-TFRSEKGLLSATQFTQPALTLMEK----A--AFEDLKSKGL 1752
Query: 396 RKKLNRF 402
F
Sbjct: 1753 IPADATF 1759
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 30.5 bits (69), Expect = 0.81
Identities = 8/80 (10%), Positives = 20/80 (25%)
Query: 220 DVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYG 279
+ ++ L + N LPL+ + KY
Sbjct: 77 EQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYV 136
Query: 280 LVYAGVGWVVWRTKDDLPDE 299
+ +A + + + +
Sbjct: 137 ICHADYPFDEYEFGKPVDHQ 156
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 29.7 bits (67), Expect = 2.1
Identities = 40/276 (14%), Positives = 76/276 (27%), Gaps = 65/276 (23%)
Query: 123 TVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGAN----VQVCWEKFARYFEVEL 178
T G+ EA + K +V N V E+ + +
Sbjct: 75 TNGAREAKFAVMHSL-----------AKKDAW--VVMDENCHYSSYVAAER----AGLNI 117
Query: 179 KEVKL-EEGYYVMNPVKAVELVDENTICVAAIL-----GSTLTGEFEDVKLLHDLLTKKN 232
V + Y + P + ++E +L G DVK + + ++ +
Sbjct: 118 ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYD 177
Query: 233 EETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINV-----SGHKYGLVYAGVGW 287
P+ V+ A + +K I SGHK A G
Sbjct: 178 ------VPLLVNGAYA---IGRMPVS---------LKEIGADFIVGSGHK---SMAASGP 216
Query: 288 V-VWRTKDDLPDELVFHINYLGSDQPTFTLNFSK--GSSQIIAQYYQF-IRLGF-EGYKN 342
+ V K++ + ++ + + G + A
Sbjct: 217 IGVMGMKEEWAEIVLR-------RSEKYKNKEVELLGCTARGATIITLMASFPHVRERIK 269
Query: 343 IMENCMGNARALREGLEKTGRFEILSKDVGVPLVAF 378
+ + AR +EK G ++ L+ F
Sbjct: 270 RWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFF 305
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166,
structural genomics, JC protein structure initiative;
2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Length = 442
Score = 29.4 bits (67), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 350 NARALREGLEKT---GRFEILSKDVGVPLV 376
+ +A+REGL+ GRFEIL K+ +
Sbjct: 291 SEKAIREGLKNAKNLGRFEILEKN--GKMY 318
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan
synthesis, cell division; HET: ADP; 2.0A {Mycobacterium
tuberculosis} PDB: 2vor_A*
Length = 487
Score = 29.2 bits (66), Expect = 3.3
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 350 NARALREGLEKT---GRFEILSKDVGVPLV 376
+ A+R G GR E + P V
Sbjct: 322 DGDAVRAGFAAVTSPGRLERMRSA---PTV 348
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 3.8
Identities = 5/22 (22%), Positives = 13/22 (59%), Gaps = 8/22 (36%)
Query: 127 SEAIMLAGLAFKRKWQQKRKEQ 148
E+I RKW+++++++
Sbjct: 84 PESI--------RKWREEQRKR 97
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 27.7 bits (62), Expect = 7.9
Identities = 8/77 (10%), Positives = 19/77 (24%), Gaps = 9/77 (11%)
Query: 350 NARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQVVYPQK 409
A+ L E + + +A +IS L + + +
Sbjct: 264 QAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA----DISPKLEQVQEETGLGF--- 316
Query: 410 LPMSYPWSTKLRVISHL 426
+ Y + +
Sbjct: 317 --VGYLVDKDGYCSTEI 331
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function;
2.00A {Candida albicans} PDB: 2x7p_A
Length = 321
Score = 27.4 bits (60), Expect = 9.3
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 15/113 (13%)
Query: 112 VADDK--TAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQ----- 164
V D K +GV +GS +M LA + + Q + N+ N++
Sbjct: 112 VTDAKQLKRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVL-SNFKNLRDSVNLKDGVEG 170
Query: 165 ---VCWEKFARYFEVELKEVKLEEGYYVMNPVKAV----ELVDENTICVAAIL 210
WE F + E+K + Y V + + + + +
Sbjct: 171 SDAFMWEYFTSKKYYDNHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFI 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,704,083
Number of extensions: 411121
Number of successful extensions: 983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 35
Length of query: 429
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 333
Effective length of database: 4,021,377
Effective search space: 1339118541
Effective search space used: 1339118541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)