RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014163
(429 letters)
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 357 bits (917), Expect = e-121
Identities = 183/393 (46%), Positives = 255/393 (64%), Gaps = 6/393 (1%)
Query: 11 REILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEP 70
E+L S F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW +
Sbjct: 9 SELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDE 68
Query: 71 ECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAI 130
KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA
Sbjct: 69 NVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEAC 128
Query: 131 MLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLEEGYYVM 190
ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY++VEL+E+ + G M
Sbjct: 129 MLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFM 187
Query: 191 NPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGF 250
+P + +E DENTI V G T TG +E + LHD L K +TG D +H+DAASGGF
Sbjct: 188 DPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 247
Query: 251 IAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHINYLGSD 310
+APF+ PD+ WDFRLP VKSI+ SGHK+GL G GWV+WR ++ LP ELVF+++YLG
Sbjct: 248 LAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 307
Query: 311 QPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK- 369
TF +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E +
Sbjct: 308 IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG 367
Query: 370 --DVGVPLVAFSLKD--SSAHTVFEISEGLRKK 398
D G+P V F LKD +T++++SE LR +
Sbjct: 368 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR 400
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 136 bits (344), Expect = 3e-36
Identities = 79/418 (18%), Positives = 144/418 (34%), Gaps = 63/418 (15%)
Query: 22 YVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECD-------- 73
Y+R IP P E Q + +M VT W P
Sbjct: 37 YLRPLIP-ATAPQEPDTFEDILQDVEKIIM----------PGVTHWHSPYFFAYFPTASS 85
Query: 74 ------KLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAV----GVGT 123
++ +I P TEL+ ++ + + P A GV
Sbjct: 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
Query: 124 VGSSEAIMLAGLAFKRKWQQKRKE------QGKPYDKPNIVTGANVQVCWEKFARYFEVE 177
+SEA ++A LA + K ++ + QG +K E+ V+
Sbjct: 146 GSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVK 205
Query: 178 LKEVKLEEGYYVMNPVKAVELVDENT------ICVAAILGSTLTGEFEDVKLLHDLLTKK 231
LK + +G + M E ++ + V A LG+T F+++ + + +
Sbjct: 206 LKAIP-SDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE- 263
Query: 232 NEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWR 291
D +HVDAA G + + S N + HK+ LV + +
Sbjct: 264 -----EDIWLHVDAAYAGSAFICPEFRHLLNG-VEFADSFNFNPHKWLLVNFDCSAMWVK 317
Query: 292 TKDDLP-----DELVFHINYLGSDQPTFTLNFSKGSSQ---IIAQYYQFIRLGFEGYKNI 343
+ DL D + ++ GS T ++ + + ++ F G +G +
Sbjct: 318 RRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAY 377
Query: 344 MENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR 401
+ + + + + RFE+ + +V + LV F LK S E L +++N
Sbjct: 378 IRKHVQLSHEFEAFVLQDPRFEVCA-EVTLGLVCFRLKGSDGLN-----EALLERINS 429
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 104 bits (260), Expect = 4e-25
Identities = 53/405 (13%), Positives = 118/405 (29%), Gaps = 55/405 (13%)
Query: 21 RYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASF------VTTWMEPECDK 74
+R + + K P++ + +++ ++D N L V + +
Sbjct: 8 HLIRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHY 67
Query: 75 LVMASINKNYVDMDEYP------VTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSE 128
+ I ++ P + ++ N V + L A ++
Sbjct: 68 RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVH----SVASCFVVPMATG 123
Query: 129 AIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVK--LEEG 186
+ R + K K I+ Q K E ++ LE
Sbjct: 124 MSLTLCFLTLRHKRPKAKY---------IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174
Query: 187 YYVMNPVKAVE----LVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIH 242
+ L E+ +C+ + + ++ L + +D P
Sbjct: 175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICAN------YDIPHV 228
Query: 243 VDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVF 302
V+ A G + ++ ++ R+ + + S K +V G + + +
Sbjct: 229 VNNAYGLQSSKCMHL-IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFI------ 281
Query: 303 HINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTG 362
+ +S + + LG GY+ +++ L L+K
Sbjct: 282 -------QDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLA 334
Query: 363 RF---EILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNRFQV 404
+L +A +LK H +++ L L QV
Sbjct: 335 EAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQ-LGSMLFTRQV 378
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 70.3 bits (171), Expect = 8e-14
Identities = 54/423 (12%), Positives = 118/423 (27%), Gaps = 64/423 (15%)
Query: 1 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNL 60
++ E +L+ + + K+P+N + E + M+D +
Sbjct: 9 LIPKNMEKRGELVLNEYL--KEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKS 66
Query: 61 AS--------FVTTWMEPECDKLVMASINKNYVDMDEY----PVTTELQNRCVNMIAHLF 108
+ E + N VD + L N+ +
Sbjct: 67 VRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQL 126
Query: 109 NTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWE 168
V + T S+ + L+ RK ++
Sbjct: 127 GLNVH------AIATPISTGMSISLCLSAARKKYGSNV----------VIYPYASHKSPI 170
Query: 169 KFARYFEVELKEVK--LEEGYYVMNPVKAVELVDE-----NTICVAAILGSTLTGEFEDV 221
K + + ++ V+ L+ + + + N CV + L +D+
Sbjct: 171 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDI 230
Query: 222 KLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLV 281
+ + + P ++ A Y + V ++ S K L
Sbjct: 231 VEIAKICENYD------IPHIINGAYAIQNN--YYLEKLKKAFKYRVDAVVSSSDKNLLT 282
Query: 282 YAGVGWVVWRTKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYK 341
G G V + + I+ + ++ ++ + +G + Y
Sbjct: 283 PIGGGLVYSTDAEFI-----KEISL--------SYPGRASATPVVNTLVSLLSMGSKNYL 329
Query: 342 NIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKKLNR 401
+++N + + L E L LSK G + +S +V + KL
Sbjct: 330 ELVKNQKNSKKLLDELLND------LSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYN 383
Query: 402 FQV 404
+V
Sbjct: 384 LRV 386
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 29.0 bits (64), Expect = 1.2
Identities = 7/53 (13%), Positives = 14/53 (26%)
Query: 318 FSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKD 370
+ + LG EG + + + A L L + +
Sbjct: 320 TTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK 372
>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
[TaxId: 4682]}
Length = 425
Score = 27.7 bits (61), Expect = 2.7
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 111 PVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKF 170
A D+ V G G ++ I ++ +V A + +
Sbjct: 119 AAAKDRYIV-FGV-GVTQLIHGLVISLSPNMTATPDAPES-----KVVAHAPFYPVFREQ 171
Query: 171 ARYFEVELKEVKL 183
+YF+ +
Sbjct: 172 TKYFDKKGYVWAG 184
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 26.8 bits (58), Expect = 5.1
Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 5/141 (3%)
Query: 186 GYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDA 245
G V + VE ++ T + + ++ L + N
Sbjct: 48 GDLVDRGAENVECLELITFPWFRAVRGN-----HEQMMIDGLSERGNVNHWLLNGGGWFF 102
Query: 246 ASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYAGVGWVVWRTKDDLPDELVFHIN 305
LPL+ + KY + +A + + + + V
Sbjct: 103 NLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGKPVDHQQVIWNR 162
Query: 306 YLGSDQPTFTLNFSKGSSQII 326
S+ + KG+ I
Sbjct: 163 ERISNSQNGIVKEIKGADTFI 183
>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
(ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
Length = 431
Score = 26.1 bits (56), Expect = 9.5
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 83 NYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKW 141
+ D P + V+ +A + V D + + T G++ A
Sbjct: 79 LFQDYHGLP---AFKKAMVDFMAEIRGNKVTFDPNHLVL-TAGATSANETFIFCLADPG 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.406
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,627,891
Number of extensions: 77655
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 9
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)