Query 014165
Match_columns 429
No_of_seqs 137 out of 1366
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 2E-65 4.4E-70 463.1 40.1 392 34-427 34-425 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 5.4E-58 1.2E-62 470.5 50.2 389 35-424 3-394 (653)
3 PTZ00186 heat shock 70 kDa pre 100.0 1.2E-57 2.5E-62 464.0 47.5 384 26-415 17-405 (657)
4 PTZ00400 DnaK-type molecular c 100.0 1.9E-56 4.1E-61 458.7 48.1 374 36-416 41-420 (663)
5 PRK13410 molecular chaperone D 100.0 1.8E-56 4E-61 457.4 47.7 375 36-417 2-382 (668)
6 PRK13411 molecular chaperone D 100.0 2.3E-56 5E-61 457.9 47.6 373 36-415 2-380 (653)
7 PF00012 HSP70: Hsp70 protein; 100.0 1.1E-56 2.4E-61 463.8 44.2 378 38-417 1-382 (602)
8 PRK00290 dnaK molecular chaper 100.0 8.9E-56 1.9E-60 454.1 48.6 373 36-417 2-380 (627)
9 TIGR02350 prok_dnaK chaperone 100.0 9.1E-56 2E-60 452.8 47.4 372 37-416 1-377 (595)
10 PLN03184 chloroplast Hsp70; Pr 100.0 2.4E-55 5.1E-60 450.8 47.2 374 36-416 39-418 (673)
11 TIGR01991 HscA Fe-S protein as 100.0 1.2E-54 2.6E-59 441.6 46.5 364 38-417 1-366 (599)
12 CHL00094 dnaK heat shock prote 100.0 1.6E-54 3.4E-59 443.5 47.6 375 36-417 2-382 (621)
13 PRK05183 hscA chaperone protei 100.0 6E-54 1.3E-58 437.3 46.7 364 35-417 18-382 (616)
14 COG0443 DnaK Molecular chapero 100.0 5.6E-51 1.2E-55 409.5 39.1 358 35-417 4-363 (579)
15 KOG0103 Molecular chaperones H 100.0 1E-50 2.2E-55 391.2 30.7 391 37-429 2-402 (727)
16 PRK01433 hscA chaperone protei 100.0 1.1E-49 2.5E-54 402.4 38.8 344 35-417 18-362 (595)
17 KOG0101 Molecular chaperones H 100.0 4.5E-50 9.7E-55 390.9 33.1 393 33-426 4-398 (620)
18 PRK11678 putative chaperone; P 100.0 8.1E-47 1.7E-51 369.1 39.4 338 37-412 1-448 (450)
19 KOG0102 Molecular chaperones m 100.0 4.2E-47 9.1E-52 356.0 31.4 379 33-418 24-408 (640)
20 KOG0104 Molecular chaperones G 100.0 3.3E-45 7.1E-50 354.1 35.5 391 35-429 21-429 (902)
21 PRK13928 rod shape-determining 100.0 1.1E-36 2.3E-41 291.3 32.2 307 39-412 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.3E-35 2.7E-40 283.0 32.0 307 37-410 5-325 (335)
23 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.6E-36 3.5E-41 282.2 18.8 308 37-411 2-321 (326)
24 PRK13927 rod shape-determining 100.0 4.3E-34 9.3E-39 273.7 31.4 307 38-412 7-325 (334)
25 TIGR00904 mreB cell shape dete 100.0 5.6E-34 1.2E-38 272.3 31.7 306 39-411 5-327 (333)
26 PRK13930 rod shape-determining 100.0 2E-33 4.4E-38 269.4 32.4 307 39-412 11-329 (335)
27 COG1077 MreB Actin-like ATPase 100.0 3E-33 6.4E-38 249.9 24.1 314 37-417 7-337 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.1E-28 2.5E-33 222.9 22.2 201 149-407 38-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 2E-26 4.3E-31 212.1 26.8 202 150-409 66-267 (267)
30 PRK09472 ftsA cell division pr 99.9 2.9E-23 6.3E-28 203.6 23.8 196 188-411 168-388 (420)
31 TIGR01174 ftsA cell division p 99.9 6.9E-23 1.5E-27 198.7 20.7 194 186-408 158-371 (371)
32 COG0849 ftsA Cell division ATP 99.9 1.1E-20 2.5E-25 180.4 24.2 200 186-412 165-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.8 1.4E-18 3.1E-23 168.9 16.6 302 39-411 2-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.8 2.5E-18 5.4E-23 167.4 15.1 303 37-411 2-347 (373)
35 PRK13917 plasmid segregation p 99.8 5.6E-16 1.2E-20 147.8 26.1 207 174-415 114-340 (344)
36 PTZ00280 Actin-related protein 99.7 2.9E-16 6.2E-21 154.5 22.1 312 36-411 4-384 (414)
37 TIGR03739 PRTRC_D PRTRC system 99.7 1.4E-15 3E-20 144.3 21.1 204 171-409 101-318 (320)
38 COG4820 EutJ Ethanolamine util 99.7 9E-17 2E-21 133.9 9.5 196 155-408 76-271 (277)
39 PTZ00452 actin; Provisional 99.7 4.3E-15 9.3E-20 143.7 19.7 305 35-411 4-349 (375)
40 PTZ00281 actin; Provisional 99.6 2.1E-15 4.6E-20 146.2 14.9 305 35-411 5-350 (376)
41 PTZ00004 actin-2; Provisional 99.6 5.2E-15 1.1E-19 143.7 16.6 303 36-411 6-352 (378)
42 TIGR01175 pilM type IV pilus a 99.6 3.6E-14 7.9E-19 136.9 21.2 179 185-409 142-347 (348)
43 PF00022 Actin: Actin; InterP 99.6 2.5E-15 5.4E-20 147.5 12.6 314 34-412 2-368 (393)
44 PTZ00466 actin-like protein; P 99.6 3.8E-14 8.3E-19 137.2 17.5 301 37-411 13-354 (380)
45 PF11104 PilM_2: Type IV pilus 99.6 1.1E-14 2.4E-19 139.5 13.6 179 185-409 135-339 (340)
46 PF06406 StbA: StbA protein; 99.6 4.3E-14 9.4E-19 133.7 13.9 176 200-407 140-317 (318)
47 COG4972 PilM Tfp pilus assembl 99.5 3.7E-12 7.9E-17 115.1 19.1 178 186-409 149-352 (354)
48 KOG0679 Actin-related protein 99.4 8.5E-12 1.8E-16 114.3 18.3 317 35-410 10-398 (426)
49 COG5277 Actin and related prot 99.4 2.5E-11 5.3E-16 118.4 17.0 183 38-275 8-203 (444)
50 TIGR00241 CoA_E_activ CoA-subs 99.3 1.8E-10 4E-15 105.3 18.0 170 204-408 73-248 (248)
51 TIGR03192 benz_CoA_bzdQ benzoy 99.1 1.6E-09 3.5E-14 98.9 15.2 176 204-411 106-288 (293)
52 TIGR03286 methan_mark_15 putat 99.0 1.7E-08 3.7E-13 95.8 17.6 195 184-410 205-402 (404)
53 KOG0676 Actin and related prot 99.0 4.9E-09 1.1E-13 98.8 13.3 299 36-411 7-346 (372)
54 PF07520 SrfB: Virulence facto 99.0 9E-08 2E-12 99.4 23.3 281 126-413 392-836 (1002)
55 TIGR02261 benz_CoA_red_D benzo 98.9 5.9E-07 1.3E-11 81.1 22.5 174 205-409 80-262 (262)
56 COG1924 Activator of 2-hydroxy 98.9 3.6E-07 7.9E-12 84.8 21.4 195 184-412 196-391 (396)
57 KOG0677 Actin-related protein 98.9 7.5E-08 1.6E-12 84.2 14.7 313 35-414 3-364 (389)
58 TIGR02259 benz_CoA_red_A benzo 98.9 1.9E-07 4.2E-12 87.7 18.4 180 204-409 249-432 (432)
59 PF08841 DDR: Diol dehydratase 98.8 6.4E-08 1.4E-12 85.8 12.8 192 195-410 105-330 (332)
60 PRK10719 eutA reactivating fac 98.8 5.2E-08 1.1E-12 93.8 12.5 83 174-268 90-184 (475)
61 KOG0797 Actin-related protein 98.8 7.3E-08 1.6E-12 91.8 13.2 121 145-274 195-321 (618)
62 PRK13317 pantothenate kinase; 98.5 4.3E-05 9.3E-10 70.6 20.8 48 363-410 223-273 (277)
63 KOG0680 Actin-related protein 98.3 2.5E-05 5.5E-10 70.8 14.6 185 36-274 3-198 (400)
64 COG4457 SrfB Uncharacterized p 98.2 0.00017 3.6E-09 71.5 19.1 82 325-411 743-846 (1014)
65 PF01869 BcrAD_BadFG: BadF/Bad 98.0 0.0011 2.3E-08 61.7 20.4 72 335-409 196-271 (271)
66 PF06277 EutA: Ethanolamine ut 97.9 7.6E-05 1.6E-09 72.3 10.4 87 174-265 87-178 (473)
67 TIGR00555 panK_eukar pantothen 97.8 0.0027 5.9E-08 58.4 18.1 47 361-407 229-278 (279)
68 KOG0681 Actin-related protein 97.4 0.0015 3.2E-08 63.7 10.7 121 148-274 92-214 (645)
69 KOG0678 Actin-related protein 97.3 0.0063 1.4E-07 55.7 12.6 99 172-273 106-207 (415)
70 COG0248 GppA Exopolyphosphatas 97.3 0.029 6.2E-07 56.0 18.5 76 188-269 91-168 (492)
71 COG1069 AraB Ribulose kinase [ 97.2 0.0035 7.6E-08 61.6 11.3 191 226-419 269-486 (544)
72 PF02782 FGGY_C: FGGY family o 97.1 0.00069 1.5E-08 59.7 4.8 75 335-411 121-196 (198)
73 PRK11031 guanosine pentaphosph 97.0 0.067 1.4E-06 54.1 18.6 76 188-269 94-171 (496)
74 PF14450 FtsA: Cell division p 96.9 0.001 2.2E-08 53.5 4.0 43 227-274 1-53 (120)
75 PRK15027 xylulokinase; Provisi 96.8 0.0039 8.4E-08 63.0 8.1 80 338-418 362-441 (484)
76 TIGR01315 5C_CHO_kinase FGGY-f 96.8 0.0053 1.1E-07 62.9 9.0 87 330-418 411-497 (541)
77 KOG2517 Ribulose kinase and re 96.6 0.01 2.2E-07 58.7 8.6 81 335-417 386-467 (516)
78 TIGR03706 exo_poly_only exopol 96.6 0.034 7.3E-07 52.4 11.9 74 190-269 90-164 (300)
79 COG4819 EutA Ethanolamine util 96.5 0.011 2.3E-07 54.5 7.7 72 174-245 89-165 (473)
80 PRK10854 exopolyphosphatase; P 96.5 0.041 8.9E-07 55.9 12.8 76 188-269 99-176 (513)
81 PLN02669 xylulokinase 96.4 0.012 2.5E-07 60.5 8.7 72 337-411 421-492 (556)
82 PRK04123 ribulokinase; Provisi 96.4 0.0099 2.2E-07 61.1 8.0 79 337-417 413-492 (548)
83 TIGR01312 XylB D-xylulose kina 96.4 0.013 2.9E-07 59.2 8.6 81 336-418 363-444 (481)
84 PRK00047 glpK glycerol kinase; 96.4 0.013 2.8E-07 59.5 8.4 80 336-417 376-456 (498)
85 PTZ00294 glycerol kinase-like 96.3 0.013 2.9E-07 59.5 8.4 80 337-418 380-460 (504)
86 TIGR01311 glycerol_kin glycero 96.3 0.012 2.6E-07 59.7 7.8 80 337-418 373-453 (493)
87 PF13941 MutL: MutL protein 96.2 0.026 5.6E-07 55.6 9.3 48 38-91 2-52 (457)
88 TIGR01234 L-ribulokinase L-rib 96.2 0.018 3.8E-07 59.1 8.4 79 337-417 410-489 (536)
89 COG2971 Predicted N-acetylgluc 96.2 1.1 2.3E-05 41.5 20.1 186 199-414 95-294 (301)
90 PRK10331 L-fuculokinase; Provi 96.2 0.018 3.9E-07 58.0 8.1 79 337-417 363-442 (470)
91 TIGR02628 fuculo_kin_coli L-fu 96.1 0.021 4.5E-07 57.4 8.1 81 336-418 366-447 (465)
92 TIGR01314 gntK_FGGY gluconate 96.0 0.021 4.6E-07 58.0 8.0 77 337-418 379-455 (505)
93 TIGR02627 rhamnulo_kin rhamnul 96.0 0.023 5E-07 57.0 8.0 54 362-418 387-440 (454)
94 PLN02295 glycerol kinase 96.0 0.025 5.4E-07 57.6 8.3 54 362-417 412-465 (512)
95 TIGR00744 ROK_glcA_fam ROK fam 96.0 1.5 3.3E-05 41.5 20.2 39 197-236 96-135 (318)
96 PRK13318 pantothenate kinase; 95.9 0.29 6.3E-06 45.0 14.4 20 38-57 2-21 (258)
97 PRK10939 autoinducer-2 (AI-2) 95.8 0.027 5.9E-07 57.5 7.7 55 362-418 409-463 (520)
98 PF14574 DUF4445: Domain of un 95.6 0.77 1.7E-05 44.9 16.4 87 322-409 288-375 (412)
99 KOG0681 Actin-related protein 95.6 0.01 2.2E-07 58.1 3.4 68 344-411 538-614 (645)
100 PRK10640 rhaB rhamnulokinase; 95.5 0.048 1E-06 54.9 8.0 79 337-418 349-428 (471)
101 KOG2531 Sugar (pentulose and h 95.5 0.052 1.1E-06 52.3 7.5 57 352-410 432-488 (545)
102 PRK13321 pantothenate kinase; 95.3 0.82 1.8E-05 42.0 14.8 21 37-57 1-21 (256)
103 PRK13320 pantothenate kinase; 95.3 0.66 1.4E-05 42.2 13.8 22 36-57 2-23 (244)
104 PF01968 Hydantoinase_A: Hydan 94.6 0.071 1.5E-06 49.9 5.9 71 335-408 214-284 (290)
105 PRK12408 glucokinase; Provisio 94.6 2.9 6.2E-05 40.1 17.0 47 197-243 107-164 (336)
106 COG0533 QRI7 Metal-dependent p 94.6 2.8 6.1E-05 39.5 16.0 236 147-411 41-318 (342)
107 COG1070 XylB Sugar (pentulose 94.5 0.15 3.3E-06 51.8 8.5 53 361-414 400-452 (502)
108 COG1521 Pantothenate kinase ty 94.5 2.2 4.7E-05 38.8 14.8 51 331-383 181-231 (251)
109 PF03702 UPF0075: Uncharacteri 94.3 0.1 2.3E-06 50.1 6.3 77 337-416 262-342 (364)
110 smart00842 FtsA Cell division 94.3 0.067 1.4E-06 46.6 4.6 30 186-215 157-186 (187)
111 PF02541 Ppx-GppA: Ppx/GppA ph 94.0 0.065 1.4E-06 50.1 4.3 74 190-269 76-151 (285)
112 PF07318 DUF1464: Protein of u 93.9 1.1 2.5E-05 42.2 12.2 73 337-414 239-318 (343)
113 COG1548 Predicted transcriptio 93.6 0.52 1.1E-05 42.2 8.8 75 156-245 75-150 (330)
114 PRK09585 anmK anhydro-N-acetyl 93.6 0.58 1.3E-05 45.0 10.0 69 345-417 272-344 (365)
115 COG5026 Hexokinase [Carbohydra 92.6 7.1 0.00015 38.0 15.2 22 33-54 72-93 (466)
116 TIGR00671 baf pantothenate kin 92.4 7.5 0.00016 35.3 14.9 19 39-57 2-20 (243)
117 PRK13322 pantothenate kinase; 92.4 4.8 0.0001 36.6 13.7 18 38-55 2-19 (246)
118 COG3426 Butyrate kinase [Energ 92.4 0.82 1.8E-05 41.6 8.3 49 360-408 294-345 (358)
119 PRK09698 D-allose kinase; Prov 92.2 10 0.00022 35.6 22.2 68 339-411 218-296 (302)
120 PRK13324 pantothenate kinase; 92.1 8.2 0.00018 35.4 14.8 20 38-57 2-21 (258)
121 TIGR03123 one_C_unchar_1 proba 92.0 2.2 4.9E-05 40.2 11.3 21 225-245 128-148 (318)
122 PRK00292 glk glucokinase; Prov 91.7 12 0.00026 35.4 19.1 58 182-243 78-146 (316)
123 COG0554 GlpK Glycerol kinase [ 91.2 0.96 2.1E-05 44.4 8.0 80 336-417 375-455 (499)
124 KOG2708 Predicted metalloprote 90.2 4.7 0.0001 35.6 10.5 61 341-407 238-300 (336)
125 COG1940 NagC Transcriptional r 90.0 17 0.00038 34.2 22.0 48 188-239 99-147 (314)
126 PRK13310 N-acetyl-D-glucosamin 89.9 17 0.00037 34.0 24.7 70 336-410 224-301 (303)
127 PRK14101 bifunctional glucokin 89.6 4.8 0.0001 42.3 12.4 21 36-56 18-38 (638)
128 PRK13329 pantothenate kinase; 89.6 16 0.00035 33.3 16.7 68 334-411 179-246 (249)
129 COG2377 Predicted molecular ch 88.7 5.3 0.00012 38.0 10.6 52 361-412 289-344 (371)
130 PRK09557 fructokinase; Reviewe 88.7 21 0.00046 33.4 23.4 70 335-409 222-299 (301)
131 PRK00976 hypothetical protein; 88.1 3.5 7.6E-05 38.9 9.0 74 336-417 242-317 (326)
132 TIGR03281 methan_mark_12 putat 87.9 2.7 5.8E-05 38.9 7.9 52 363-417 263-317 (326)
133 PF08735 DUF1786: Putative pyr 87.9 7.5 0.00016 35.2 10.5 95 171-270 113-210 (254)
134 PLN02920 pantothenate kinase 1 87.6 21 0.00046 34.6 14.0 53 361-413 296-354 (398)
135 PLN02666 5-oxoprolinase 87.3 11 0.00025 42.5 13.7 78 330-411 455-534 (1275)
136 PRK03011 butyrate kinase; Prov 87.2 2.7 5.9E-05 40.5 8.0 76 336-417 272-350 (358)
137 KOG2707 Predicted metalloprote 86.5 30 0.00065 32.8 17.1 112 154-267 83-199 (405)
138 TIGR00143 hypF [NiFe] hydrogen 84.8 2.1 4.5E-05 45.3 6.3 49 362-410 658-711 (711)
139 PF00370 FGGY_N: FGGY family o 83.4 1.2 2.5E-05 40.6 3.4 20 37-56 1-20 (245)
140 PF02543 CmcH_NodU: Carbamoylt 81.8 7.6 0.00016 37.5 8.4 82 328-414 132-216 (360)
141 COG4012 Uncharacterized protei 81.4 12 0.00027 33.8 8.7 68 203-274 207-274 (342)
142 PRK14878 UGMP family protein; 81.1 52 0.0011 31.3 18.7 32 363-394 242-275 (323)
143 PLN02362 hexokinase 80.7 20 0.00044 36.3 11.2 52 186-240 206-259 (509)
144 smart00732 YqgFc Likely ribonu 80.4 1.8 3.9E-05 32.9 3.0 20 37-56 2-21 (99)
145 PTZ00107 hexokinase; Provision 80.1 22 0.00048 35.6 11.2 57 186-242 195-254 (464)
146 PF00349 Hexokinase_1: Hexokin 79.1 2.1 4.5E-05 37.8 3.3 31 188-218 171-204 (206)
147 COG1070 XylB Sugar (pentulose 78.6 2.3 5E-05 43.3 3.9 23 34-56 2-24 (502)
148 PF14450 FtsA: Cell division p 76.7 4.7 0.0001 32.1 4.5 22 38-59 1-22 (120)
149 PLN02405 hexokinase 76.0 47 0.001 33.6 12.1 54 187-243 207-262 (497)
150 COG0145 HyuA N-methylhydantoin 75.9 3.5 7.6E-05 43.2 4.4 40 205-245 258-298 (674)
151 PLN02914 hexokinase 75.9 46 0.001 33.6 12.0 55 187-244 207-263 (490)
152 PTZ00294 glycerol kinase-like 75.0 2.8 6.1E-05 42.7 3.4 21 36-56 2-22 (504)
153 PTZ00340 O-sialoglycoprotein e 74.8 7.2 0.00016 37.3 5.8 47 343-394 249-297 (345)
154 PRK10939 autoinducer-2 (AI-2) 74.6 2.9 6.2E-05 42.8 3.4 21 36-56 3-23 (520)
155 PF03652 UPF0081: Uncharacteri 74.3 3.9 8.4E-05 33.4 3.4 22 36-57 1-22 (135)
156 COG2192 Predicted carbamoyl tr 74.2 1.1E+02 0.0023 31.2 15.4 79 329-412 256-336 (555)
157 TIGR00329 gcp_kae1 metallohydr 72.6 86 0.0019 29.5 18.9 39 343-386 244-282 (305)
158 PRK09605 bifunctional UGMP fam 71.9 13 0.00028 38.2 7.4 53 363-415 246-303 (535)
159 PRK10331 L-fuculokinase; Provi 71.9 3.4 7.4E-05 41.6 3.1 20 37-56 3-22 (470)
160 TIGR03723 bact_gcp putative gl 71.2 9.3 0.0002 36.2 5.7 45 362-406 259-308 (314)
161 PRK05082 N-acetylmannosamine k 70.7 16 0.00034 34.1 7.2 72 335-411 211-288 (291)
162 PTZ00297 pantothenate kinase; 68.9 2.4E+02 0.0051 33.0 24.2 50 360-409 1389-1444(1452)
163 PRK04123 ribulokinase; Provisi 67.5 5.5 0.00012 41.0 3.6 19 36-54 3-21 (548)
164 PRK15027 xylulokinase; Provisi 67.3 4.9 0.00011 40.7 3.2 20 37-56 1-20 (484)
165 PLN02669 xylulokinase 67.2 5.5 0.00012 41.0 3.5 24 33-56 5-28 (556)
166 PRK00109 Holliday junction res 66.9 7 0.00015 32.0 3.4 22 35-56 3-24 (138)
167 TIGR02628 fuculo_kin_coli L-fu 66.4 5.1 0.00011 40.3 3.0 20 37-56 2-21 (465)
168 TIGR02707 butyr_kinase butyrat 65.8 22 0.00048 34.2 7.1 71 335-408 269-342 (351)
169 TIGR01311 glycerol_kin glycero 64.7 6.1 0.00013 40.1 3.3 20 37-56 2-21 (493)
170 PLN02295 glycerol kinase 64.7 5.4 0.00012 40.7 2.9 20 37-56 1-20 (512)
171 PRK00047 glpK glycerol kinase; 64.5 6.3 0.00014 40.1 3.3 21 36-56 5-25 (498)
172 TIGR01234 L-ribulokinase L-rib 64.5 6.7 0.00015 40.3 3.6 18 37-54 2-19 (536)
173 TIGR01314 gntK_FGGY gluconate 63.5 5.8 0.00013 40.4 2.9 20 37-56 1-20 (505)
174 PRK09604 UGMP family protein; 61.8 1.5E+02 0.0033 28.3 26.7 53 362-414 254-311 (332)
175 COG0816 Predicted endonuclease 60.7 9.7 0.00021 31.3 3.1 22 36-57 2-23 (141)
176 TIGR01315 5C_CHO_kinase FGGY-f 59.3 8.5 0.00019 39.6 3.2 19 38-56 2-20 (541)
177 PLN02596 hexokinase-like 59.2 1.5E+02 0.0033 30.0 11.8 56 186-244 206-263 (490)
178 PRK13331 pantothenate kinase; 58.7 1.3E+02 0.0027 27.5 10.3 24 34-57 5-28 (251)
179 cd06007 R3H_DEXH_helicase R3H 57.9 39 0.00084 23.1 5.2 30 174-203 16-45 (59)
180 PF02685 Glucokinase: Glucokin 56.2 68 0.0015 30.4 8.5 81 196-276 88-180 (316)
181 TIGR03722 arch_KAE1 universal 55.9 18 0.00039 34.4 4.6 42 363-404 243-289 (322)
182 PRK13331 pantothenate kinase; 55.5 15 0.00032 33.5 3.7 70 335-410 177-248 (251)
183 PRK00180 acetate kinase A/prop 55.2 42 0.00092 32.9 7.0 50 335-387 299-349 (402)
184 PF14574 DUF4445: Domain of un 54.0 74 0.0016 31.4 8.5 52 335-386 56-107 (412)
185 KOG1369 Hexokinase [Carbohydra 53.7 45 0.00097 33.3 6.9 63 180-245 186-251 (474)
186 PF08392 FAE1_CUT1_RppA: FAE1/ 52.9 86 0.0019 29.2 8.2 54 334-387 76-130 (290)
187 PLN02377 3-ketoacyl-CoA syntha 52.7 61 0.0013 32.9 7.9 55 333-387 164-219 (502)
188 cd02639 R3H_RRM R3H domain of 52.2 38 0.00081 23.3 4.4 30 174-203 17-46 (60)
189 PRK13326 pantothenate kinase; 51.4 19 0.0004 33.2 3.7 22 36-57 6-27 (262)
190 PTZ00297 pantothenate kinase; 51.2 76 0.0017 36.9 9.2 144 225-410 1039-1182(1452)
191 KOG2872 Uroporphyrinogen decar 49.5 62 0.0013 29.9 6.5 69 328-400 219-287 (359)
192 cd00529 RuvC_resolvase Hollida 45.2 34 0.00075 28.5 4.2 18 37-54 1-18 (154)
193 PRK07058 acetate kinase; Provi 45.0 73 0.0016 31.1 6.7 50 334-387 294-344 (396)
194 cd02641 R3H_Smubp-2_like R3H d 44.7 78 0.0017 21.6 5.1 31 174-204 17-47 (60)
195 KOG1794 N-Acetylglucosamine ki 44.5 67 0.0014 29.8 6.0 80 335-414 234-319 (336)
196 PLN02854 3-ketoacyl-CoA syntha 44.4 91 0.002 31.8 7.6 55 333-387 180-235 (521)
197 TIGR00016 ackA acetate kinase. 44.3 85 0.0018 30.8 7.1 49 336-387 304-353 (404)
198 TIGR03457 sulphoacet_xsc sulfo 44.2 1.4E+02 0.0031 30.9 9.4 64 172-239 16-79 (579)
199 cd02640 R3H_NRF R3H domain of 43.5 97 0.0021 21.2 5.4 31 173-203 16-46 (60)
200 TIGR01319 glmL_fam conserved h 42.9 28 0.0006 34.6 3.6 58 186-243 194-267 (463)
201 TIGR03254 oxalate_oxc oxalyl-C 42.5 1.2E+02 0.0027 31.2 8.6 63 173-239 18-80 (554)
202 PLN02902 pantothenate kinase 42.4 2.6E+02 0.0056 30.4 10.7 159 225-407 214-397 (876)
203 KOG2517 Ribulose kinase and re 41.1 26 0.00056 35.4 3.1 20 35-54 5-24 (516)
204 PF00349 Hexokinase_1: Hexokin 40.7 1.8E+02 0.004 25.5 8.2 25 223-247 61-85 (206)
205 TIGR00250 RNAse_H_YqgF RNAse H 40.3 20 0.00043 29.0 1.9 18 39-56 1-18 (130)
206 COG4020 Uncharacterized protei 38.5 33 0.00071 30.9 3.1 72 343-417 249-323 (332)
207 TIGR01504 glyox_carbo_lig glyo 38.4 2.6E+02 0.0057 29.1 10.3 64 173-239 18-82 (588)
208 PRK07418 acetolactate synthase 36.6 1.8E+02 0.0038 30.5 8.8 67 173-239 34-100 (616)
209 PRK08273 thiamine pyrophosphat 36.5 2.5E+02 0.0054 29.3 9.8 65 173-239 18-82 (597)
210 TIGR02707 butyr_kinase butyrat 36.1 71 0.0015 30.8 5.3 26 227-252 2-27 (351)
211 PLN03170 chalcone synthase; Pr 35.8 2.6E+02 0.0057 27.5 9.3 48 340-387 105-153 (401)
212 PLN02192 3-ketoacyl-CoA syntha 34.7 1.7E+02 0.0037 29.8 7.8 55 333-387 168-223 (511)
213 PRK09259 putative oxalyl-CoA d 34.4 1.7E+02 0.0037 30.3 8.1 63 173-239 25-87 (569)
214 PRK07586 hypothetical protein; 34.3 1.9E+02 0.0041 29.5 8.4 63 173-239 16-79 (514)
215 PF03309 Pan_kinase: Type III 33.7 53 0.0011 28.9 3.7 21 38-58 1-21 (206)
216 PRK06276 acetolactate synthase 33.6 3.1E+02 0.0068 28.5 10.0 63 173-239 16-78 (586)
217 PF13941 MutL: MutL protein 33.1 1.4E+02 0.003 30.0 6.8 48 227-274 2-50 (457)
218 PLN03173 chalcone synthase; Pr 32.8 3.5E+02 0.0076 26.5 9.6 58 330-387 90-149 (391)
219 PRK00976 hypothetical protein; 32.8 56 0.0012 31.0 3.8 23 36-58 1-23 (326)
220 COG4126 Hydantoin racemase [Am 32.7 2.1E+02 0.0045 25.5 7.0 58 347-412 164-221 (230)
221 PRK08979 acetolactate synthase 32.5 4.1E+02 0.0089 27.5 10.6 63 173-239 19-82 (572)
222 COG0028 IlvB Thiamine pyrophos 32.4 1.8E+02 0.004 30.0 7.8 64 172-239 16-79 (550)
223 cd02646 R3H_G-patch R3H domain 32.1 1.5E+02 0.0032 20.0 4.9 29 174-203 16-44 (58)
224 COG2441 Predicted butyrate kin 31.8 89 0.0019 28.8 4.7 54 361-414 272-335 (374)
225 PF05378 Hydant_A_N: Hydantoin 31.7 45 0.00099 28.5 2.9 18 39-56 2-19 (176)
226 PLN00415 3-ketoacyl-CoA syntha 31.4 2E+02 0.0044 28.9 7.6 47 341-387 134-181 (466)
227 COG1069 AraB Ribulose kinase [ 31.0 45 0.00098 33.6 3.0 21 35-55 2-22 (544)
228 COG5026 Hexokinase [Carbohydra 30.9 1.4E+02 0.003 29.5 6.2 24 223-246 73-96 (466)
229 TIGR02627 rhamnulo_kin rhamnul 30.6 26 0.00055 35.2 1.3 17 39-55 1-17 (454)
230 TIGR01312 XylB D-xylulose kina 30.4 29 0.00063 35.0 1.7 17 39-55 1-17 (481)
231 PRK06965 acetolactate synthase 30.2 3.6E+02 0.0079 28.0 9.8 64 173-239 36-99 (587)
232 TIGR00555 panK_eukar pantothen 30.0 1.3E+02 0.0028 27.9 5.7 44 362-409 49-92 (279)
233 COG4012 Uncharacterized protei 29.8 48 0.001 30.2 2.7 48 226-273 2-71 (342)
234 PRK13321 pantothenate kinase; 29.7 2.3E+02 0.005 25.8 7.3 17 227-243 2-18 (256)
235 COG1940 NagC Transcriptional r 29.6 2.4E+02 0.0052 26.4 7.7 56 224-279 5-60 (314)
236 PLN02920 pantothenate kinase 1 28.5 1.4E+02 0.003 29.2 5.7 47 361-411 95-141 (398)
237 PRK06895 putative anthranilate 28.4 64 0.0014 27.9 3.3 46 363-415 44-92 (190)
238 TIGR01865 cas_Csn1 CRISPR-asso 28.2 49 0.0011 35.8 3.0 20 37-56 2-21 (805)
239 PRK07979 acetolactate synthase 27.9 5.2E+02 0.011 26.7 10.4 63 173-239 19-82 (574)
240 PLN03172 chalcone synthase fam 27.8 5.2E+02 0.011 25.3 9.8 49 339-387 100-149 (393)
241 TIGR03285 methan_mark_14 putat 27.3 3.3E+02 0.0072 26.2 7.7 56 364-424 364-426 (445)
242 PF09887 DUF2114: Uncharacteri 27.2 2.9E+02 0.0063 26.7 7.3 56 364-424 367-430 (448)
243 PF05378 Hydant_A_N: Hydantoin 27.1 1.6E+02 0.0034 25.2 5.4 43 228-274 2-44 (176)
244 PF02685 Glucokinase: Glucokin 26.9 82 0.0018 29.9 3.9 48 228-275 1-48 (316)
245 PF02075 RuvC: Crossover junct 26.1 75 0.0016 26.3 3.2 24 38-61 1-26 (149)
246 PRK08199 thiamine pyrophosphat 25.9 5.7E+02 0.012 26.3 10.3 64 172-239 22-86 (557)
247 PF00814 Peptidase_M22: Glycop 25.9 1.9E+02 0.0041 26.6 6.1 40 342-386 206-245 (268)
248 PRK08327 acetolactate synthase 25.9 7.5E+02 0.016 25.6 12.2 67 172-239 21-90 (569)
249 cd01741 GATase1_1 Subgroup of 25.9 72 0.0016 27.3 3.2 48 361-414 45-100 (188)
250 PLN02932 3-ketoacyl-CoA syntha 25.9 3.5E+02 0.0077 27.3 8.3 56 332-387 139-195 (478)
251 TIGR03394 indol_phenyl_DC indo 25.7 4.1E+02 0.0089 27.3 9.1 64 172-239 14-78 (535)
252 KOG1385 Nucleoside phosphatase 25.7 58 0.0012 31.8 2.6 20 224-243 212-231 (453)
253 PF01385 OrfB_IS605: Probable 25.6 34 0.00074 30.2 1.1 28 30-57 118-145 (227)
254 COG0068 HypF Hydrogenase matur 25.3 1.7E+02 0.0037 30.8 6.0 50 361-410 692-746 (750)
255 PF00480 ROK: ROK family; Int 25.3 4E+02 0.0087 22.2 8.5 108 126-242 13-134 (179)
256 PRK13318 pantothenate kinase; 25.1 2.8E+02 0.0062 25.2 7.1 17 227-243 2-18 (258)
257 PRK07525 sulfoacetaldehyde ace 25.0 6.3E+02 0.014 26.2 10.5 63 173-239 21-83 (588)
258 COG0554 GlpK Glycerol kinase [ 24.5 66 0.0014 32.1 2.9 22 35-56 4-25 (499)
259 PRK07157 acetate kinase; Provi 24.4 2.5E+02 0.0054 27.6 6.7 49 336-387 297-346 (400)
260 PTZ00288 glucokinase 1; Provis 23.9 70 0.0015 31.5 3.0 21 35-55 25-45 (405)
261 PF03630 Fumble: Fumble ; Int 23.9 60 0.0013 31.1 2.5 47 361-411 82-128 (341)
262 PRK11199 tyrA bifunctional cho 23.3 6.9E+02 0.015 24.2 11.3 15 263-277 13-27 (374)
263 PF01548 DEDD_Tnp_IS110: Trans 23.1 87 0.0019 25.4 3.0 20 38-57 1-20 (144)
264 COG0552 FtsY Signal recognitio 22.7 3.4E+02 0.0073 25.9 7.0 89 133-234 141-231 (340)
265 PRK07789 acetolactate synthase 22.6 3.7E+02 0.008 28.2 8.2 63 173-239 46-109 (612)
266 PF03630 Fumble: Fumble ; Int 22.3 2.2E+02 0.0047 27.4 5.9 48 362-409 287-340 (341)
267 TIGR03393 indolpyr_decarb indo 22.3 3.3E+02 0.0072 27.9 7.7 64 172-239 15-78 (539)
268 cd00529 RuvC_resolvase Hollida 22.2 4.5E+02 0.0098 21.7 12.2 144 227-408 2-151 (154)
269 PRK07092 benzoylformate decarb 21.6 6.6E+02 0.014 25.6 9.7 62 173-239 27-88 (530)
270 PF04848 Pox_A22: Poxvirus A22 21.4 1.6E+02 0.0035 24.2 4.2 19 37-55 2-20 (143)
271 cd01745 GATase1_2 Subgroup of 21.4 93 0.002 26.9 3.0 47 363-415 54-120 (189)
272 PRK12440 acetate kinase; Revie 21.4 2.9E+02 0.0063 27.1 6.5 48 336-387 298-346 (397)
273 PRK13311 N-acetyl-D-glucosamin 20.6 85 0.0018 28.5 2.7 40 198-238 96-136 (256)
274 PF02075 RuvC: Crossover junct 20.6 4.9E+02 0.011 21.4 9.9 30 227-256 1-30 (149)
275 COG3894 Uncharacterized metal- 20.2 7.1E+02 0.015 25.3 8.8 47 224-270 163-210 (614)
276 PRK03011 butyrate kinase; Prov 20.0 1E+02 0.0022 29.8 3.2 23 36-58 2-24 (358)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-65 Score=463.08 Aligned_cols=392 Identities=82% Similarity=1.227 Sum_probs=382.1
Q ss_pred cCCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCH
Q 014165 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (429)
Q Consensus 34 ~~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~ 113 (429)
+...+||||+||+|++++++.+|.+++|.+.+|++.+||.++|+++++++|+.|.++...+|++++.+.|+++++...+.
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
.++..++.+||++++.++.|.+.+....|..+.++|+++.+++|..+++.++.+++.+..+.++|||+||.+.||++.++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 99999999999999999999999999778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|...||+..++++.||.|||++|+++..+...+++|+|+||||+|++++.+.++.|++++.++...+||.+||+++++++
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l 353 (429)
...++++.+.+++++.+...+|++++|++|+.|++.....+.++.+++|.+++-+++|..|+++--.++......+.++|
T Consensus 274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl 353 (663)
T KOG0100|consen 274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVL 353 (663)
T ss_pred HHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCCCCcceEeee
Q 014165 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKGMITCT 427 (429)
Q Consensus 354 ~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~~~~~~~~~~ 427 (429)
+..+++..+++.|+|+||+.|+|-+++.++..|++.+.....||++|||+||+..|..+||++. ..+||+-+
T Consensus 354 ~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~--t~divLLD 425 (663)
T KOG0100|consen 354 EDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEED--TGDIVLLD 425 (663)
T ss_pred hhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccC--cCcEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999966 77887654
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.4e-58 Score=470.53 Aligned_cols=389 Identities=68% Similarity=1.082 Sum_probs=357.5
Q ss_pred CCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
+..+|||||||+|+++|++.++.++++.+..|.+.+||+|+|.++.+++|+.|......+|.+++..+|+++++...+..
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
++.....+++.++ +.+|.+.+.+.+ .+....++++++.+.+|++|++.++..++..+.+++||||++|++.+|+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTY-QGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEe-CCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 8888888888876 678888888887 77778899999999999999999999999888999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 272 (429)
|++.||++.+.+++||.|||++|+..... ....++|+|+||||+|++++++.++.+++++..+...+||.+||..|+++
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999876543 46789999999999999999999999999988888899999999999999
Q ss_pred HHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHH
Q 014165 273 FIKLIKKKH-GKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (429)
Q Consensus 273 l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~ 351 (429)
+.++|++++ +.++..+++.+.+|+.+||++|+.|+....+.+.++.+.++.++.+.|+|++|+++++|+++++.+.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~ 321 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEK 321 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 999998776 4667778889999999999999999999999999988888889999999999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCCCCcceE
Q 014165 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKGMI 424 (429)
Q Consensus 352 ~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~~~~~~~ 424 (429)
+|+.++....+++.|+|+||+|++|.|++.|++.|++..+....||+++||+||+++|+++++..+..+++++
T Consensus 322 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~ 394 (653)
T PTZ00009 322 VLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLL 394 (653)
T ss_pred HHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceE
Confidence 9999998888899999999999999999999999976778888899999999999999999987543444444
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.2e-57 Score=464.04 Aligned_cols=384 Identities=53% Similarity=0.878 Sum_probs=348.9
Q ss_pred hcchhhhccCCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhh
Q 014165 26 SIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRL 105 (429)
Q Consensus 26 ~~~~~~~~~~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~ 105 (429)
.++|+..+-...+||||||||++++|++.++.+.++.+..|.+.+||+|+|.++.+++|..|......+|.+++..+|++
T Consensus 17 ~~~~~~~~~~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRl 96 (657)
T PTZ00186 17 LARHESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRL 96 (657)
T ss_pred ccccccCcccceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHH
Confidence 35677666667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCC
Q 014165 106 IGRKFEDKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFN 184 (429)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~ 184 (429)
+++...+..+......+|+.++ +.+|...+. .+....++|+++.+.+|+++++.++..++.++..++||||++|+
T Consensus 97 iG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~----~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~ 172 (657)
T PTZ00186 97 IGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ----DGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFN 172 (657)
T ss_pred hccccccHHHHHhhccCcEEEEEcCCCceEEE----eCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCC
Confidence 9999888888888888999877 556655443 22346789999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHH
Q 014165 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (429)
Q Consensus 185 ~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~ 264 (429)
+.+|+.+++|++.||+..+.++.||.|||++|+.... .+..++|+|+||||+|++++++.++.+++++..+...+||.+
T Consensus 173 ~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~D 251 (657)
T PTZ00186 173 DAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGED 251 (657)
T ss_pred hHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchh
Confidence 9999999999999999999999999999999987654 467899999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccC---C-cceeeeecHHHHHHHhHH
Q 014165 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD---G-IDFSEPLTRARFEELNND 340 (429)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~---~-~~~~~~i~~~~~~~~~~~ 340 (429)
||+.|.+++.++|+++++.++..++..+.+|+.+||++|+.|+....+.+.++.+.. | .++.+.|+|++|+++++|
T Consensus 252 fD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~ 331 (657)
T PTZ00186 252 FDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQR 331 (657)
T ss_pred HHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHH
Confidence 999999999999999988888888899999999999999999999888888765433 2 357889999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++++...+.++|+.++....+++.|+|+||+|++|.|++.|++.| +.+.....||+++||+||+++|+.+++.
T Consensus 332 l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 332 LIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred HHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc
Confidence 9999999999999999998889999999999999999999999999 5556677899999999999999999885
No 4
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.9e-56 Score=458.71 Aligned_cols=374 Identities=55% Similarity=0.911 Sum_probs=340.2
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeC-CcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~-~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
..+|||||||+|+++|++.++.++++.+..|.+.+||+++|++ +.+++|..|......+|++++..+|+++|+...+..
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 4699999999999999999999999999999999999999975 588999999999999999999999999999988888
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
+......+|+.++ +.+|.+.+. + ....++|+++.+.+|++|++.++.+++..+.+++||||++|++.+|+.+++
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~--~---~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 195 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIE--A---QGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKD 195 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEE--E---CCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 8777788898877 566665544 2 235789999999999999999999999889999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||++.+.++.||.|||++|+.... .+..++|+|+||||+|++++++.++.+++++..+...+||.+||+.|.+++
T Consensus 196 Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l 274 (663)
T PTZ00400 196 AGKIAGLDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYL 274 (663)
T ss_pred HHHHcCCceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999987654 577899999999999999999998999998888888999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCC----cceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~----~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
.++|+++++.++..+++.+.+|+.+||++|+.|+....+.+.++.+..+ .++.+.|+|++|+++++|+++++.+.+
T Consensus 275 ~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i 354 (663)
T PTZ00400 275 IAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPC 354 (663)
T ss_pred HHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888899999999999999999988888877654332 467889999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCC
Q 014165 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (429)
Q Consensus 350 ~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~ 416 (429)
.++|++++....+++.|+|+||+|++|+|++.|++.| +.++....||+++||.||+++|+++++..
T Consensus 355 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~~ 420 (663)
T PTZ00400 355 EKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGEI 420 (663)
T ss_pred HHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCCc
Confidence 9999999988888999999999999999999999999 56777888999999999999999998853
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-56 Score=457.36 Aligned_cols=375 Identities=50% Similarity=0.824 Sum_probs=337.2
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeC-CcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~-~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
..+|||||||+++++|++.+|.+.++.+..|.+.+||+|+|.+ +.+++|..|......+|+++++.+|++++++..+.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~- 80 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDEL- 80 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhh-
Confidence 4689999999999999999999999999999999999999975 58999999999999999999999999999886543
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
......+||.+. +++|...+.+.. ....++|+++++.+|++|++.+...++.++..++||||++|++.+|+.+++
T Consensus 81 -~~~~~~~~~~v~~~~~g~~~i~~~~---~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 156 (668)
T PRK13410 81 -DPESKRVPYTIRRNEQGNVRIKCPR---LEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRD 156 (668)
T ss_pred -HHhhccCCeEEEECCCCcEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 334456788776 566666555433 346899999999999999999999999888999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||+..+.++.||.|||++|+.... .+.+++|+|+||||+|++++++.++.+++++..+...+||.+||+.|++++
T Consensus 157 Aa~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l 235 (668)
T PRK13410 157 AGRIAGLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWL 235 (668)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHH
Confidence 9999999999999999999999987654 567899999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCC----cceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~----~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
.++|.++++.++..+++.+.+|+.+||++|+.|+....+.+.++.+..+ .++...++|++|+++++++++++...+
T Consensus 236 ~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i 315 (668)
T PRK13410 236 AEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPV 315 (668)
T ss_pred HHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888889999999999999999988888887765432 357788999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 350 ~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
.++|+.++....+++.|+|+||+|++|+|++.|++.| +.++....||+++||+|||++|+++++..+
T Consensus 316 ~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~~~ 382 (668)
T PRK13410 316 KRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGELK 382 (668)
T ss_pred HHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccccc
Confidence 9999999988889999999999999999999999999 567778889999999999999999998543
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.3e-56 Score=457.91 Aligned_cols=373 Identities=53% Similarity=0.883 Sum_probs=336.4
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeC-CcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~-~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
+.+|||||||+++++|++.+|.+.++.+..|.+.+||+|+|.+ +.+++|..|......+|.++++.+|+++|+...+..
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 3689999999999999999999999999999999999999976 489999999999999999999999999999877754
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
. .....|+..+ ..+|.+.+. + . ...++++++.+.+|++|++.++..++.++.+++||||++|++.+|+.+++
T Consensus 82 ~--~~~~~~~~~v~~~~~~~~~~--i-~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 82 E--ERSRVPYTCVKGRDDTVNVQ--I-R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred H--HhhcCCceEEecCCCceEEE--E-C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 3 3456777766 455544433 3 2 35689999999999999999999998888999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||++.+.++.||.|||++|+......+.+++|+|+||||+|++++++.++.+++++..+...+||.+||+.|++++
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999887655678899999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccC----CcceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~----~~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
.++|+++++.++..+++.+.+|+.+||++|+.|+....+.+.++.+.. +.++.+.|+|++|+++++|+++++...+
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i 314 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPM 314 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888889999999999999999998888887765432 2467889999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 350 ~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
.++|++++....+++.|+|+||+|++|+|++.|++.|++..+....||+++||+||+++|+.+++.
T Consensus 315 ~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~ 380 (653)
T PRK13411 315 QQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE 380 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC
Confidence 999999998888899999999999999999999999976778888999999999999999999876
No 7
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.1e-56 Score=463.78 Aligned_cols=378 Identities=56% Similarity=0.891 Sum_probs=340.2
Q ss_pred EEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHHHHH
Q 014165 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQR 117 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 117 (429)
+|||||||+++++|++.++.++++.+..|.+.+||+|+|.++.+.+|..|......+|.+++..+|+++|+...+..+..
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHHH
Q 014165 118 DMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGI 196 (429)
Q Consensus 118 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~~ 196 (429)
....+++.+. +++|.+.+++.+ .|....++++++++.+|++|++.+...++..+.++++|||++|+..+|+.+++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDY-DGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEE-TTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccc-cccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 8888899877 678999999888 77778999999999999999999999998888899999999999999999999999
Q ss_pred HcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 014165 197 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (429)
Q Consensus 197 ~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~ 276 (429)
.||++.+.+++||.|||++|.......+..++|+|+||||+|++++++.++.++++...+...+||.+||+.|++++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999877766789999999999999999999999999999888889999999999999999999
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHccC--CceEEEEEecccC-CcceeeeecHHHHHHHhHHHHHHHHHHHHHHH
Q 014165 277 IKKKHGKDISKDKRAIGKLRREAERAKRALSS--QHQVRVEIESLFD-GIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~--~~~~~~~i~~~~~-~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l 353 (429)
++++++.++..+++.+.+|+.+||++|+.|+. .....+.+..+.+ |.++.+.|+|++|+++++|+++++...+.+++
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 99998888888899999999999999999999 5666666666666 78899999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 354 ~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
+.++....+++.|+|+||+|++|+|++.|++.|+ ..+....||+++||.|||++|+.+++..+
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~~~ 382 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGSFR 382 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTSCS
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccccc
Confidence 9998888889999999999999999999999995 77788889999999999999999998544
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.9e-56 Score=454.14 Aligned_cols=373 Identities=62% Similarity=1.007 Sum_probs=337.7
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEe-CCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~-~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
+.+|||||||+++++|++.+|.+.++.+..|.+.+||+++|. ++.+++|+.|......+|.+++..+|+++++. ...
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 368999999999999999999999999999999999999997 56899999999999999999999999999988 445
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
+....+.+|+.++ +.+|...+. + +| ..++++++.+.+|++|++.+...++.++.+++||||++|++.+|+.+++
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~--~-~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVE--I-DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEE--E-CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 5666678888877 455554443 3 23 5789999999999999999999999888999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||++.+.+++||.|||++|+.... .+.+++|+|+||||||++++++.++.+++++..+...+||.+||+.|++++
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 233 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYL 233 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHH
Confidence 9999999999999999999999987664 568899999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccC----CcceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~----~~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
.++|+++++.++..+++.+.+|+.+||++|+.|+....+.+.++.+.. +.++.+.|+|++|+++++|+++++...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 313 (627)
T PRK00290 234 ADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPC 313 (627)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888899999999999999999999888888775543 2567889999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 350 ~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
.++|+.++....+++.|+|+||+|++|+|++.|++.| +.++....||+++||.||+++|+.+++..+
T Consensus 314 ~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~~~ 380 (627)
T PRK00290 314 KQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGDVK 380 (627)
T ss_pred HHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCCcc
Confidence 9999999988888999999999999999999999999 677888889999999999999999998533
No 9
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=9.1e-56 Score=452.78 Aligned_cols=372 Identities=59% Similarity=0.942 Sum_probs=336.6
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC-cEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHHH
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~-~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~~ 115 (429)
.+|||||||+++++|++.+|.+.++.+..|.+.+||+++|.++ .+++|..|......+|++++..+|+++++... .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999865 89999999999999999999999999998763 34
Q ss_pred HHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHH
Q 014165 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (429)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~ 195 (429)
....+..|+.+..++|...+.+. ...++++++.+.+|++|++.+...++.++.++++|||++|++.+|+.+++|+
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~v~-----~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYKVVGDGGDVRVKVD-----GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCeeEEcCCCceEEEEC-----CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 55566788886677776655432 3578999999999999999999999888899999999999999999999999
Q ss_pred HHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 014165 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (429)
Q Consensus 196 ~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 275 (429)
+.||++.+.+++||.|||++|+......+..++|+|+||||+|++++++.++.+++++..+...+||.+||+.|++++.+
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 99999999999999999999987664567889999999999999999999999999988888899999999999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccC----CcceeeeecHHHHHHHhHHHHHHHHHHHHH
Q 014165 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~----~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~ 351 (429)
+|+++++.++..+++.+.+|+.+||++|+.|+....+.+.++.+.. +.++.+.|+|++|+++++|+++++.+.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888889999999999999999998888887765433 246788999999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCC
Q 014165 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (429)
Q Consensus 352 ~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~ 416 (429)
+|+.++....+++.|+|+||+|++|+|++.|++.| +.++....||+++||.||+++|+.+++.-
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~~ 377 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGDV 377 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCCc
Confidence 99999988888999999999999999999999999 46788888999999999999999998863
No 10
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.4e-55 Score=450.76 Aligned_cols=374 Identities=53% Similarity=0.831 Sum_probs=336.5
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeC-CcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~-~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
..+|||||||+++++|++.+|.+.++.+..|.+.+||+|+|.+ +.+++|..|......+|.+++..+|++++++..+.
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~- 117 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV- 117 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchh-
Confidence 3699999999999999999999999999999999999999975 47999999999999999999999999999987653
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
......++|.++ +.+|...+.+.. ....++++++.+.+|++|++.+...++.++.+++||||++|++.+|+.+++
T Consensus 118 -~~~~~~~~~~v~~~~~~~v~~~~~~---~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 118 -DEESKQVSYRVVRDENGNVKLDCPA---IGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhcCCeEEEecCCCcEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 345566788776 556666555444 235789999999999999999999998888999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||+..+.+++||.|||++|+.... .+..++|+|+||||+|++++++.++.+++++..+...+||.+||+.|++++
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~ 272 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 272 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccC----CcceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~----~~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
.++|+.+++.++..+++.+.+|+.+||++|+.|+....+.+.++.+.. +.++.+.|+|++|+++++++++++...+
T Consensus 273 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i 352 (673)
T PLN03184 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPV 352 (673)
T ss_pred HHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888899999999999999999999888887764432 2467889999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCC
Q 014165 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (429)
Q Consensus 350 ~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~ 416 (429)
.++|+.++....+++.|+|+||+|++|.|++.|++.| +..+....||+++||.||+++|+++++..
T Consensus 353 ~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~~ 418 (673)
T PLN03184 353 ENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGEV 418 (673)
T ss_pred HHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccCc
Confidence 9999999988889999999999999999999999999 56677788999999999999999999853
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.2e-54 Score=441.63 Aligned_cols=364 Identities=45% Similarity=0.708 Sum_probs=325.4
Q ss_pred EEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC-cEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHHHH
Q 014165 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~-~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 116 (429)
+||||||||++++|++.+|.+.++.+..|.+.+||+|+|.++ .+.+|..|......+|.+++..+|+++|+...+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 489999999999999999999999999999999999999866 899999999999999999999999999987665432
Q ss_pred HhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHH
Q 014165 117 RDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (429)
Q Consensus 117 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~ 195 (429)
....|+.+. .++|.+.+++.. ..++|+++.+.+|++|++.+...++..+.++++|||++|++.+|+.+++|+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQ-----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCC-----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 445677766 455555544322 268999999999999999999999988899999999999999999999999
Q ss_pred HHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 014165 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (429)
Q Consensus 196 ~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 275 (429)
+.||++.+.++.||.|||++|+.... ....++|+|+||||+|++++++.++.+++++..+...+||.+||+.|.+++.+
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987654 56789999999999999999999999999998888999999999999999864
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014165 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMED 355 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~ 355 (429)
+++.+...++....+|+.+||++|+.|+....+.+.++. +|.+..+.|++++|+++++|+++++.+.+.++|++
T Consensus 232 ----~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~ 305 (599)
T TIGR01991 232 ----QLGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRD 305 (599)
T ss_pred ----hhCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555567888899999999999999998888887763 67889999999999999999999999999999999
Q ss_pred cCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 356 AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 356 ~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
++....+++.|+|+||+|++|+|++.|++.| +..+....||+++||.||+++|+.+++..+
T Consensus 306 a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~~~ 366 (599)
T TIGR01991 306 AGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRI 366 (599)
T ss_pred cCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccccc
Confidence 9988888999999999999999999999999 556667789999999999999999998764
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.6e-54 Score=443.53 Aligned_cols=375 Identities=55% Similarity=0.870 Sum_probs=336.4
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeC-CcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~-~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
+.+|||||||+++++|++.+|.+.++.+..|.+.+||+++|.+ +.+++|..|......+|++++..+|+++++...+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 4799999999999999999999999999999999999999976 4799999999999999999999999999987654
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
+....+..++.+. +++|.+.+.... ....++++++.+.+|+++++.++..++..+.++++|||++|++.+|+.+++
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~---~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~ 156 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPA---LNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKD 156 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 3445566788776 556766665444 335789999999999999999999888878899999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||+..+.++.||.|||++|+.... .+..++|+|+||||+|+++++++++.+++++..+...+||.+||+.|++++
T Consensus 157 Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 157 AGKIAGLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred HHHHcCCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccC----CcceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~----~~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
.++|+++++.++..+++.+.+|+.+||++|+.|+....+.+.++.+.. +.++...|+|++|+++++++++++...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 315 (621)
T CHL00094 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPV 315 (621)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888899999999999999999998888887765432 2467788999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 350 ~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
.+.|++++....+++.|+|+||+|++|.+++.|++.| +.++....||+++||.||+++|+.+++..+
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~~~ 382 (621)
T CHL00094 316 ENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGEVK 382 (621)
T ss_pred HHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence 9999999888888999999999999999999999999 567788889999999999999999988543
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=6e-54 Score=437.35 Aligned_cols=364 Identities=44% Similarity=0.715 Sum_probs=322.1
Q ss_pred CCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
...+||||||||++++|++.+|.+.++.+..|.+.+||+++|.++.+.+|..|......+|.++++.+|+++++...+.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~- 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI- 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh-
Confidence 3478999999999999999999999999999999999999999888999999999999999999999999999876553
Q ss_pred HHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
.......|+.+. .++|.+.+.+. + ..++|+++.+.+|++|++.++..++..+.++++|||++|++.+|+.+++
T Consensus 97 -~~~~~~~~~~~~~~~~g~~~~~~~--~---~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 170 (616)
T PRK05183 97 -QQRYPHLPYQFVASENGMPLIRTA--Q---GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKD 170 (616)
T ss_pred -hhhhhcCCeEEEecCCCceEEEec--C---CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 233445677766 44676665532 2 2679999999999999999999998888999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||++.+.+++||.|||++|+.... ....++|+|+||||+|++++++.++.+++++..+...+||.+||+.|++++
T Consensus 171 Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~ 249 (616)
T PRK05183 171 AARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI 249 (616)
T ss_pred HHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999998989999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l 353 (429)
.++ ++.+...++....+|+.+||++|+.|+....+.+.+... ...|++++|+++++|+++++...+.++|
T Consensus 250 ~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L 319 (616)
T PRK05183 250 LEQ----AGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRAL 319 (616)
T ss_pred HHH----cCCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 444455677888899999999999999988888777432 2249999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 354 ~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
++++....+++.|+|+||+|++|+|++.|++.| +..+....||+++||+|||++|+.+++..+
T Consensus 320 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~~~ 382 (616)
T PRK05183 320 RDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKP 382 (616)
T ss_pred HHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccccc
Confidence 999988888999999999999999999999999 455667789999999999999999998754
No 14
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-51 Score=409.51 Aligned_cols=358 Identities=59% Similarity=0.903 Sum_probs=330.2
Q ss_pred CCcEEEEecCCceEEEEEEECC-eEEEEecCCCCcccceEEEEeCC-cEEEcHhHHHhhhhCCCceecchhhhcCCCCCC
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNG-HVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~-~~~~i~~~~g~~~~Ps~i~~~~~-~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~ 112 (429)
.+.+||||||||||++|++..+ .+.++.+..|.+.+||+++|..+ ++.+|..|..+...+|.+++..+|+.+++....
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 4589999999999999999988 79999999999999999999977 599999999999999999999999999876111
Q ss_pred HHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHH
Q 014165 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (429)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~ 192 (429)
. ...+.+ ....++++++.+++|.+++++++..++..+..++||||++|++.+|..++
T Consensus 84 ~--------------------~~~~~~---~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 84 L--------------------KISVEV---DGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred C--------------------cceeee---CCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 1 011111 12578999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHH
Q 014165 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (429)
Q Consensus 193 ~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~ 272 (429)
+|+..+|+..+.++.||.|||++|+.... .+..++|+|+||||+|++++++..+.++++...++..+||++||..|..+
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHH
Confidence 99999999999999999999999999888 78899999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHH
Q 014165 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKA 352 (429)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~ 352 (429)
+.+.|+++.+.++..+.....+|+..||++|+.|+....+.+.++....+.+....++|++|++.+.+++.++...+...
T Consensus 220 ~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 220 LVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred HHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999988766666667889999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 353 l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
+...+....+++.|+++||++++|.+++.+++.|+ .++....||+++||.||+++|+.+++..+
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999994 77888889999999999999999999877
No 15
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-50 Score=391.23 Aligned_cols=391 Identities=41% Similarity=0.649 Sum_probs=371.7
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHHHH
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 116 (429)
.++|||||..++.+|++..+++++|.+..++|.+|++++|.++.+++|.+|..+...++.+++..+|++.+++..++.++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHH
Q 014165 117 RDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (429)
Q Consensus 117 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~ 195 (429)
+....++++++ ..||.+-+++.+ .|+...+++++++++|+.+|+..++..+..+...+||+||++|++.+|+.+.+|+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~y-lge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEY-LGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hcccccchheeecCCCCcceeehc-ccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999988 999999999999 9999999999999999999999999999888889999999999999999999999
Q ss_pred HHcCCceeeeccchhHHHHHhhhccCC------CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHH
Q 014165 196 IIAGLNVARIINEPTAAAIAYGLDKKG------GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (429)
Q Consensus 196 ~~ag~~~~~~v~E~~Aaa~~~~~~~~~------~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l 269 (429)
..||+.+++++.|-.|+|++|+.+..+ ...+++++|+|.+++.++++.+..+.++++++.+...+||.++|+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999887665 45679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 270 MEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
.+++...|+.+|+.+...+++..-||+..||++|+.++.+......++-+.++.+..-.++|++|++++.|+++.+...+
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999998888889989999999999999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCCC---CcceEee
Q 014165 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDE---TKGMITC 426 (429)
Q Consensus 350 ~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~~---~~~~~~~ 426 (429)
.+.|+.+++..++++.|.++||++|+|.+++.|.+.| +.+..++.|.++|||+||+|..|++|.-.+-+ +++++..
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~py 399 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCccccceecceecccce
Confidence 9999999999999999999999999999999999999 89999999999999999999999999766533 5666666
Q ss_pred ecC
Q 014165 427 TLS 429 (429)
Q Consensus 427 ~~~ 429 (429)
+||
T Consensus 400 sIs 402 (727)
T KOG0103|consen 400 SIS 402 (727)
T ss_pred eEE
Confidence 654
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.1e-49 Score=402.37 Aligned_cols=344 Identities=35% Similarity=0.528 Sum_probs=286.1
Q ss_pred CCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
+..+|||||||||+++|++.++.+.++.+..|.+.+||+++|.++.+.+|..| +++++|++++++..+..
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 34689999999999999999999999999999999999999998889999987 68899999998765421
Q ss_pred HHHhc-ccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 115 VQRDM-KLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 115 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
..... ..........++ ...+.+ ....++++++.+.+|++|++.++..++.++.++++|||++|++.||+.+++
T Consensus 88 ~~~~~~~~~k~~~~~~~~--~~~~~~---~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~ 162 (595)
T PRK01433 88 NTPALFSLVKDYLDVNSS--ELKLNF---ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVML 162 (595)
T ss_pred cchhhHhhhhheeecCCC--eeEEEE---CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 10000 000000111111 222223 235789999999999999999999999888999999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
|++.||+..+.++.||.|||++|+.... ....++|+|+||||+|++++++.++.+++++..+...+||.+||+.|.+++
T Consensus 163 Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~ 241 (595)
T PRK01433 163 AAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYL 241 (595)
T ss_pred HHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHH
Confidence 9999999999999999999999987654 456799999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l 353 (429)
.+++ +.. .+. ...+.||++|+.|+....... ..+.|||++|+++++|+++++...+.+++
T Consensus 242 ~~~~----~~~--~~~----~~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L 301 (595)
T PRK01433 242 CNKF----DLP--NSI----DTLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECL 301 (595)
T ss_pred HHhc----CCC--CCH----HHHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 221 111 123469999999987664321 16889999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 354 ~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
++++ ..+++.|+|+||+|++|++++.|++.| +.++....||+++||+|||++|+.+++..+
T Consensus 302 ~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~~~ 362 (595)
T PRK01433 302 EQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAPHT 362 (595)
T ss_pred hhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCCcc
Confidence 9987 457999999999999999999999999 567777889999999999999999987543
No 17
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-50 Score=390.88 Aligned_cols=393 Identities=67% Similarity=1.045 Sum_probs=370.3
Q ss_pred ccCCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCC
Q 014165 33 TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (429)
Q Consensus 33 ~~~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~ 112 (429)
.+.+..|||||||++++++++.++.+.++.+..|++.+|+.++|.++..+.|.+|..+...+|.+++.+.++++++...+
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCeEEec-CCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHH
Q 014165 113 KEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (429)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l 191 (429)
..++..+...|+.+.. ..+.|.+.+.. ++....++++++.++.|..+.+.+...++.....+++|||++|+..||...
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~-~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTY-KGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecc-cccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 9999999999999884 44578888888 777889999999999999999999999998889999999999999999999
Q ss_pred HHHHHHcCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 014165 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (429)
Q Consensus 192 ~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 270 (429)
.+++..+|+..++++.||.||+++|++.... ...+++|+|+||||+|++++...++.+.+........+||.++|+.+.
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 9999999999999999999999999866653 567889999999999999999998888888889989999999999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHH
Q 014165 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (429)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~ 350 (429)
+|+...|+++++.++..+.+...+|+.+||.+|+.|+....+++.++.+.+|.++...+++.+|++.+.+++....+.+.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~ 322 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVE 322 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCCCCcceEee
Q 014165 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKGMITC 426 (429)
Q Consensus 351 ~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~~~~~~~~~ 426 (429)
+.|..+++++.+++.|+|+||++++|-++..+++.|++..+..+.||+++||+||+++||.+++.......++++-
T Consensus 323 ~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 323 KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 9999999999999999999999999999999999998899999999999999999999999999988776666543
No 18
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=8.1e-47 Score=369.05 Aligned_cols=338 Identities=26% Similarity=0.389 Sum_probs=280.7
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEe---------------------------------------
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT--------------------------------------- 77 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~--------------------------------------- 77 (429)
+++|||||||||.+|++.++.++++.+..|...+||+++|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 36999999999999999999999999888999999999994
Q ss_pred --CCcEEEcHhHHHhhhhCCCce--ecchhhhcCCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHH
Q 014165 78 --DSERLIGEAAKNQAAVNPDRT--IFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEIS 153 (429)
Q Consensus 78 --~~~~~~G~~A~~~~~~~~~~~--i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (429)
++...+|..|.+.+..+|+++ +..+|++++...-. ......+++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------------------~~~~~~~e~l~ 130 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------------------PQQVALFEDLV 130 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------------------ccceeCHHHHH
Confidence 346789999999999998888 77999999764211 01123489999
Q ss_pred HHHHHHHHHHHHHHcCCcccceEEccCCCCC-----HHHHH---HHHHHHHHcCCceeeeccchhHHHHHhhhccCCCcc
Q 014165 154 AMILTKMKETAEAFLGKKIKDAVVTVPAYFN-----DAQRQ---ATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEK 225 (429)
Q Consensus 154 ~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~-----~~~r~---~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~ 225 (429)
+.+|++|++.++..++.++.++|||||++|+ +.+|+ .+++|++.||++.+.+++||.|||++|..... .+.
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~ 209 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEK 209 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCC
Confidence 9999999999999998888999999999998 55654 47999999999999999999999999976543 578
Q ss_pred EEEEEEeCCCceEEEEEEEeCC-------eEEEEEecCCCCCchHHHHHHHH-HHHHHHHHHH----hCCCC--------
Q 014165 226 NILVFDLGGGTFDVSILTIDNG-------VFEVLSTNGDTHLGGEDFDQRVM-EYFIKLIKKK----HGKDI-------- 285 (429)
Q Consensus 226 ~~lvvDiG~~ttd~~v~~~~~~-------~~~~~~~~~~~~~Gg~~id~~l~-~~l~~~~~~~----~~~~~-------- 285 (429)
.+||+|+||||+|++++++.+. ..++++..+ ..+||.+||+.|. +++...|.+. .+.++
T Consensus 210 ~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~ 288 (450)
T PRK11678 210 RVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNA 288 (450)
T ss_pred eEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhh
Confidence 8999999999999999998643 346666665 7899999999997 5676666421 11100
Q ss_pred ---------------------------cccHHHH------------HHHHHHHHHHHHHccCCceEEEEEecccCCccee
Q 014165 286 ---------------------------SKDKRAI------------GKLRREAERAKRALSSQHQVRVEIESLFDGIDFS 326 (429)
Q Consensus 286 ---------------------------~~~~~~~------------~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~ 326 (429)
..++... .+|+.+||++|+.||....+.+.++... .++.
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~ 366 (450)
T PRK11678 289 VAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLA 366 (450)
T ss_pred hhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcc
Confidence 0112112 3788999999999999998888887443 3567
Q ss_pred eeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHH
Q 014165 327 EPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (429)
Q Consensus 327 ~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~ 406 (429)
..|++++|+++++|.++++.+.+.+.++.++.. ++.|+|+||+|++|++++.+++.||+.++... +|..+||.|++
T Consensus 367 ~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g-~~~~sVa~Gla 442 (450)
T PRK11678 367 TEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGG-DDFGSVTAGLA 442 (450)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeC-CCcchHHHHHH
Confidence 899999999999999999999999999998754 57899999999999999999999977776654 99999999999
Q ss_pred HHHHhh
Q 014165 407 VQGGIL 412 (429)
Q Consensus 407 l~a~~~ 412 (429)
++|+.+
T Consensus 443 ~~a~~~ 448 (450)
T PRK11678 443 RWAQVV 448 (450)
T ss_pred HHHHhh
Confidence 999874
No 19
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-47 Score=355.95 Aligned_cols=379 Identities=59% Similarity=0.915 Sum_probs=355.3
Q ss_pred ccCCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC-cEEEcHhHHHhhhhCCCceecchhhhcCCCCC
Q 014165 33 TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (429)
Q Consensus 33 ~~~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~-~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~ 111 (429)
.....++|||+||+++++++..+..+.++.+-.|.+.+|++++|+.+ .++.|..|..+...+|.+++..-|+++++...
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 55678999999999999999999999999999999999999999655 89999999999999999999999999999999
Q ss_pred CHHHHHhcccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHH
Q 014165 112 DKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (429)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~ 190 (429)
+.++++.++..|++.+ .++|+.+++. ....++|.++.+..|.+++++++..++......+++||+||.+.||++
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~-----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqa 178 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEA-----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQA 178 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEe-----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHH
Confidence 9999999999999988 6777766653 567889999999999999999999999888999999999999999999
Q ss_pred HHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 014165 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (429)
Q Consensus 191 l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 270 (429)
.++|.+.+|+..++++.||.||+++|+++... +..++|.|+|+||+|+++.++.++.+++.+...+...||.++|..+.
T Consensus 179 Tkdag~iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~ 257 (640)
T KOG0102|consen 179 TKDAGQIAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALV 257 (640)
T ss_pred hHhhhhhccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHH
Confidence 99999999999999999999999999998876 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCC----cceeeeecHHHHHHHhHHHHHHHH
Q 014165 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTM 346 (429)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~----~~~~~~i~~~~~~~~~~~~~~~i~ 346 (429)
+++...|++..+.++..+...+.+|.+.+|++|.++++...+++.++.+..+ ..+.+++++.+|++.+.+++++..
T Consensus 258 ~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti 337 (640)
T KOG0102|consen 258 RFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTI 337 (640)
T ss_pred HHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998876655 567889999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCC
Q 014165 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGD 418 (429)
Q Consensus 347 ~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~ 418 (429)
+.+.+.|..++....+++.|+|+||++|+|.+++.+++.| +.......||+++||.||++.+..++++=++
T Consensus 338 ~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~geVkd 408 (640)
T KOG0102|consen 338 EPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGEVKD 408 (640)
T ss_pred hHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhccccc
Confidence 9999999999988889999999999999999999999999 6667777799999999999999999987553
No 20
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-45 Score=354.08 Aligned_cols=391 Identities=36% Similarity=0.541 Sum_probs=352.7
Q ss_pred CCcEEEEecCCceEEEEEEECCe-EEEEecCCCCcccceEEEEeCCcEEEcHhHHHhhhhCCCceecchhhhcCCCCCCH
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGH-VEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~-~~~i~~~~g~~~~Ps~i~~~~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~ 113 (429)
...+++||+|+..+++++...|- .+++.+...+|++|++++|.++.++||..|.......|+.++..++.++++...+.
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 45799999999999999999885 46677888999999999999999999999999999999999999999999999888
Q ss_pred HHHHhcccCCeEEecCC-CcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHH
Q 014165 114 EVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (429)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~ 192 (429)
.+...-+.+|+--...+ ....+.+.+ +....+++++++++.|.+....++.+...++..++||||.+|++.+|+.+.
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i--~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKI--SDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEe--CCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 77777777776544333 233333333 336788999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeccchhHHHHHhhhccCC----CccEEEEEEeCCCceEEEEEEEe----------CCeEEEEEecCCC
Q 014165 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKG----GEKNILVFDLGGGTFDVSILTID----------NGVFEVLSTNGDT 258 (429)
Q Consensus 193 ~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~----~~~~~lvvDiG~~ttd~~v~~~~----------~~~~~~~~~~~~~ 258 (429)
+|++.+|+....++.+-.|+|+.|+..+.. ...+.++.|+|+|+|..+++.+. ...++..+..+..
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999888643 66789999999999999999984 2577888889989
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCC--CCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHH
Q 014165 259 HLGGEDFDQRVMEYFIKLIKKKHGK--DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEE 336 (429)
Q Consensus 259 ~~Gg~~id~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~ 336 (429)
.+||..|+.+|..++.+.|.++.+. ++..+++.+.+|.++|+++|.-|+.+.++...++.+.++.|+...|||++|++
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 9999999999999999999888764 56778999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~ 416 (429)
+|+++...+...|.++|..+++..++|+.|+|.||++|+|.+++.|.+..+...+-...|.++|+++||+++||-||-..
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999899999999999999999999999999878888889999999999999999999999
Q ss_pred CCCCcceEeeecC
Q 014165 417 GDETKGMITCTLS 429 (429)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (429)
+ +++.+..|.|
T Consensus 419 K--vKpf~V~D~~ 429 (902)
T KOG0104|consen 419 K--VKPFNVVDAS 429 (902)
T ss_pred c--ccceeeeecc
Confidence 9 7777766643
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.1e-36 Score=291.29 Aligned_cols=307 Identities=26% Similarity=0.368 Sum_probs=234.5
Q ss_pred EEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC--c-EEEcHhHHHhhhhCCCceecchhhhcCCCCCCHHH
Q 014165 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS--E-RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~--~-~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~~ 115 (429)
+||||||++|+++...++ .++. .||+++++.+ . ..+|++|.+.....|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~~~~--~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~--~----------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG--IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI--R----------- 63 (336)
T ss_pred eEEEcccccEEEEECCCC--EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--c-----------
Confidence 899999999999876444 3332 4999999964 3 478999976665555544310 0
Q ss_pred HHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHH
Q 014165 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (429)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~ 195 (429)
++ .+|.. ...+....+++++++............+++|+|.+|+..+|+.+++++
T Consensus 64 --pi--------------------~~G~i---~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 64 --PL--------------------RDGVI---ADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred --cC--------------------CCCeE---ecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 00 02222 233455666777765543221222346999999999999999999999
Q ss_pred HHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 014165 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (429)
Q Consensus 196 ~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 275 (429)
+.+|++.+.+++||.||+++++.... ....++|+|+|+||||+++++.+... ......+||.+||+.|.+++..
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987554 45668999999999999999986433 3456899999999999999854
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc----eEEEEEe--cccCCcceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~----~~~~~i~--~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
++ +..... ..||++|+.++... ...+.+. ....+.+..+.|+++++++++.+.++++.+.+
T Consensus 193 ~~----~~~~~~---------~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i 259 (336)
T PRK13928 193 KY----KLLIGE---------RTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAV 259 (336)
T ss_pred Hh----chhcCH---------HHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHH
Confidence 44 332222 67999999886431 1233332 22445667789999999999999999999999
Q ss_pred HHHHHHcCC--CcCCCC-eEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhh
Q 014165 350 KKAMEDAGL--EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 350 ~~~l~~~~~--~~~~~~-~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~ 412 (429)
.+.++.++. ....++ .|+|+||+|++|++++.+++.| +.++....||..+||+||++++..+
T Consensus 260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 999999863 244566 7999999999999999999999 7888888899999999999998774
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.3e-35 Score=282.95 Aligned_cols=307 Identities=26% Similarity=0.389 Sum_probs=240.5
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC-c--EEEcHhHHHhhhhCCCceecchhhhcCCCCCCH
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~-~--~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~ 113 (429)
..+||||||+++++ +.++...++ + .||+++++.+ . ..+|++|.......|+++... +-+
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~~~-~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi------- 66 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGIIL-N------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPM------- 66 (335)
T ss_pred CeEEEEcccccEEE--EECCCcEEe-c------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecC-------
Confidence 35999999999986 444544333 3 3999999854 2 579999988877777765531 111
Q ss_pred HHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcc--cceEEccCCCCCHHHHHHH
Q 014165 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI--KDAVVTVPAYFNDAQRQAT 191 (429)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~itvP~~~~~~~r~~l 191 (429)
++|.. ..-++.+.+|+++++.+...++... ..+++|+|++++..+|+.+
T Consensus 67 --------------------------~~G~I---~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 67 --------------------------KDGVI---ADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred --------------------------CCCcc---CCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 12222 2226778999999988776665433 3799999999999999999
Q ss_pred HHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 014165 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (429)
Q Consensus 192 ~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 271 (429)
.++++.+|++.+.++.||.||+++++.... ....++|+|+|+||||++++++++.. ......+||.++|+.|.+
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHH
Confidence 999999999999999999999999977654 45678999999999999999876533 345578999999999999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc----eEEEEEe--cccCCcceeeeecHHHHHHHhHHHHHHH
Q 014165 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKT 345 (429)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~----~~~~~i~--~~~~~~~~~~~i~~~~~~~~~~~~~~~i 345 (429)
++.+ .++..... ..||++|++++... .....+. ....+.+..+.++++++++++.+.+.++
T Consensus 192 ~l~~----~~~~~~~~---------~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i 258 (335)
T PRK13929 192 FVRK----KYNLLIGE---------RTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHI 258 (335)
T ss_pred HHHH----HhCcCcCH---------HHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHH
Confidence 9853 34433332 68999999997531 1223332 2334566789999999999999999999
Q ss_pred HHHHHHHHHHcCCC--cCCCC-eEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHH
Q 014165 346 MGPVKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (429)
Q Consensus 346 ~~~i~~~l~~~~~~--~~~~~-~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~ 410 (429)
.+.+.+.|++++.. ...++ +|+|+||+|++|++.+.+++.| +.++....||..+||.||+..-.
T Consensus 259 ~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~~ 325 (335)
T PRK13929 259 LEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSLE 325 (335)
T ss_pred HHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHHH
Confidence 99999999998643 34566 6999999999999999999999 78888888999999999998853
No 23
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.6e-36 Score=282.17 Aligned_cols=308 Identities=28% Similarity=0.405 Sum_probs=224.8
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC---cEEEcHhHHHhhhhCCCceecchhhhcCCCCCCH
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~---~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~ 113 (429)
.-|||||||++|.++...+| .++ + .||+++++.+ -..+|++| +.++++.+.+.
T Consensus 2 ~~igIDLGT~~t~i~~~~~G--iv~-~------epSvVA~~~~~~~i~avG~~A---------------~~m~gktp~~i 57 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG--IVL-N------EPSVVAYDKDTGKILAVGDEA---------------KAMLGKTPDNI 57 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE--EEE-E------EES-EEEETTT--EEEESHHH---------------HTTTTS-GTTE
T ss_pred CceEEecCcccEEEEECCCC--EEE-e------cCcEEEEECCCCeEEEEhHHH---------------HHHhhcCCCcc
Confidence 46999999999998444444 222 2 2999999875 34689999 45555554444
Q ss_pred HHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHH
Q 014165 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (429)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~ 193 (429)
.+.+++. +|.... -++...+|+++++.+.........+++++||+..++.+|+++.+
T Consensus 58 ~~~~Pl~--------------------~GvI~D---~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 58 EVVRPLK--------------------DGVIAD---YEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp EEE-SEE--------------------TTEESS---HHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred EEEcccc--------------------CCcccC---HHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 4333332 444333 35677778887777765322234589999999999999999999
Q ss_pred HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHH
Q 014165 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 194 a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
++..+|.+.+.+++||.|||++.+.+.. .....++||+|+||||++++..++.. .+....+||+++|+.|.+++
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~-~~~g~miVDIG~GtTdiavislggiv-----~s~si~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIF-EPRGSMIVDIGGGTTDIAVISLGGIV-----ASRSIRIGGDDIDEAIIRYI 188 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TT-SSS-EEEEEE-SS-EEEEEEETTEEE-----EEEEES-SHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCC-CCCceEEEEECCCeEEEEEEECCCEE-----EEEEEEecCcchhHHHHHHH
Confidence 9999999999999999999999988876 45667999999999999999865533 35568999999999999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc----eEEEEE--ecccCCcceeeeecHHHHHHHhHHHHHHHHH
Q 014165 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEI--ESLFDGIDFSEPLTRARFEELNNDLFRKTMG 347 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~----~~~~~i--~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 347 (429)
+++|+..+.. ..||++|++++... ...+.+ ....+|.+..+.++.+++.+++.+.+.+|.+
T Consensus 189 ----r~~y~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~ 255 (326)
T PF06723_consen 189 ----REKYNLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVE 255 (326)
T ss_dssp ----HHHHSEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred ----HHhhCcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6666766776 99999999986542 223444 3467899999999999999999999999999
Q ss_pred HHHHHHHHcCCC-cCCC--CeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHh
Q 014165 348 PVKKAMEDAGLE-KNQI--DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 348 ~i~~~l~~~~~~-~~~~--~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
.+++.|++.... ..++ ++|+|+||+|++++|.++|++.+ +.++....||.++||.|+......
T Consensus 256 ~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 256 AIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC-
T ss_pred HHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHhC
Confidence 999999986432 1122 57999999999999999999999 899999999999999999876543
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.3e-34 Score=273.69 Aligned_cols=307 Identities=26% Similarity=0.403 Sum_probs=229.1
Q ss_pred EEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC---cEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHH
Q 014165 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~---~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~ 114 (429)
.||||+||++++++...++. ++ .+||++++.++ ...+|++|.+.....|..+... +.
T Consensus 7 ~igIDlGt~~~~i~~~~~~~--~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~p--------- 66 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI--VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--RP--------- 66 (334)
T ss_pred eeEEEcCcceEEEEECCCcE--EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--ec---------
Confidence 59999999999985544432 22 25999999754 2489999977765555543211 10
Q ss_pred HHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHH
Q 014165 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (429)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a 194 (429)
+++|....++ ....++++++.......... ..+++++|++|+..+|+.++.+
T Consensus 67 ------------------------i~~G~i~d~~---~~~~ll~~~~~~~~~~~~~~-~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 67 ------------------------MKDGVIADFD---VTEKMLKYFIKKVHKNFRPS-PRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred ------------------------CCCCeecCHH---HHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCCHHHHHHHHHH
Confidence 1133333332 23444444444332222211 3799999999999999999999
Q ss_pred HHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 014165 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (429)
Q Consensus 195 ~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 274 (429)
++.+|++.+.++.||.|++++++.... ....++|+|+|+||||+++++.++.. ......+||.+||+.|.+++.
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~ 192 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVR 192 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHH
Confidence 999999999999999999999977544 45568999999999999999876543 244578999999999999985
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCce----EEEEEe--cccCCcceeeeecHHHHHHHhHHHHHHHHHH
Q 014165 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~----~~~~i~--~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 348 (429)
+ +++..... ..+|++|+.++.... .++.+. ....+.+..+.+++++|++++.+.++++.+.
T Consensus 193 ~----~~~~~~~~---------~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 259 (334)
T PRK13927 193 R----NYNLLIGE---------RTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEA 259 (334)
T ss_pred H----HhCcCcCH---------HHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHH
Confidence 3 33433332 678999999864432 223332 2334566688999999999999999999999
Q ss_pred HHHHHHHcCCC--cCCCC-eEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhh
Q 014165 349 VKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 349 i~~~l~~~~~~--~~~~~-~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~ 412 (429)
+.+.+++++.. ...++ .|+|+||+|++|++++.|++.| +.++....+|..+||+||++++..+
T Consensus 260 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 260 VKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 99999988643 22333 5999999999999999999999 6888888899999999999998764
No 25
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=5.6e-34 Score=272.32 Aligned_cols=306 Identities=26% Similarity=0.387 Sum_probs=226.1
Q ss_pred EEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC-----c--EEEcHhHHHhhhhCCCceecchhhhcCCCCC
Q 014165 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~-----~--~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~ 111 (429)
|||||||++|+++...++. ++ ..||++++.++ . ..+|++|.+.....|++... ++.+
T Consensus 5 ~giDlGt~~s~i~~~~~~~--~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGI--VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCCE--EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecC-----
Confidence 9999999999998865442 22 25999999743 2 67999997665555544321 1111
Q ss_pred CHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHH
Q 014165 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (429)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l 191 (429)
++|....+ +....++++++.............+++|+|+.|+..+|+.+
T Consensus 69 ----------------------------~~G~i~d~---~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 69 ----------------------------KDGVIADF---EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ----------------------------CCCEEEcH---HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 13333333 23344444444433221111123899999999999999999
Q ss_pred HHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHH
Q 014165 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (429)
Q Consensus 192 ~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~ 271 (429)
+++++.+|++.+.++.||.||+++++.... ....++|+|+|+||||+++++.++.. ......+||.++|+.|.+
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~ 191 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIIN 191 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHH
Confidence 999999999999999999999999876543 45678999999999999999876543 245578999999999999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCce-----EEEEEec--ccCCcceeeeecHHHHHHHhHHHHHH
Q 014165 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ-----VRVEIES--LFDGIDFSEPLTRARFEELNNDLFRK 344 (429)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~-----~~~~i~~--~~~~~~~~~~i~~~~~~~~~~~~~~~ 344 (429)
++.++ ++..... +.||++|+.++.... ..+.+.. ...+.+....++++++.+++.+.+++
T Consensus 192 ~l~~~----~~~~~~~---------~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 258 (333)
T TIGR00904 192 YIRRT----YNLLIGE---------QTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQ 258 (333)
T ss_pred HHHHH----hcccCCH---------HHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHH
Confidence 98543 3333322 689999999865322 1222211 12234456789999999999999999
Q ss_pred HHHHHHHHHHHcCCC--cCCCC-eEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHh
Q 014165 345 TMGPVKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 345 i~~~i~~~l~~~~~~--~~~~~-~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
+.+.+.+.++.++.. ....+ .|+|+||+|++|++++.|++.| +.++....||..+||.||+++...
T Consensus 259 i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 259 IVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 999999999987643 22233 7999999999999999999999 788999999999999999999765
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2e-33 Score=269.39 Aligned_cols=307 Identities=27% Similarity=0.376 Sum_probs=231.6
Q ss_pred EEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC---cEEEcHhHHHhhhhCCCceecchhhhcCCCCCCHHH
Q 014165 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~---~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~~~~ 115 (429)
+|||+||++|+++++.++ . ++ .+||++++.+. ..++|++|.......|.+... ++
T Consensus 11 vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~----------- 68 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--IR----------- 68 (335)
T ss_pred eEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--ee-----------
Confidence 999999999999987444 2 22 14999999753 368999997766544443211 10
Q ss_pred HHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHH
Q 014165 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (429)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~ 195 (429)
.+++|....+ +....+++++++............+++++|+.|+..+|+.+.+++
T Consensus 69 ----------------------pi~~G~i~d~---~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 69 ----------------------PLKDGVIADF---EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred ----------------------cCCCCeEcCH---HHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 0112322222 446777777776554433333468999999999999999999999
Q ss_pred HHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 014165 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (429)
Q Consensus 196 ~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 275 (429)
+.+|++.+.++.||.||+++++.... .....+|+|+|+||||++++..+... ......+||.++|+.|.+++.+
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~ 197 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRR 197 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999876544 34457999999999999999876543 3566899999999999999854
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCce----EEEEEe--cccCCcceeeeecHHHHHHHhHHHHHHHHHHH
Q 014165 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~----~~~~i~--~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i 349 (429)
+ ++..... ..||++|+.++.... ..+.+. ....+.+..+.++++++++++.+.++++.+.+
T Consensus 198 ~----~~~~~~~---------~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i 264 (335)
T PRK13930 198 K----YNLLIGE---------RTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAV 264 (335)
T ss_pred H----hCCCCCH---------HHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHH
Confidence 3 4433332 678999999864332 223332 22345556788999999999999999999999
Q ss_pred HHHHHHcCCC--cCCCC-eEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhh
Q 014165 350 KKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 350 ~~~l~~~~~~--~~~~~-~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~ 412 (429)
.+.+++++.. .+.++ .|+|+||+|++|++++.|++.| +.++....+|..+||.||++.+...
T Consensus 265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 9999987532 22344 4999999999999999999999 6888888899999999999998654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=100.00 E-value=3e-33 Score=249.91 Aligned_cols=314 Identities=28% Similarity=0.385 Sum_probs=254.1
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeC--C---cEEEcHhHHHhhhhCCCceecchhhhcCCCCC
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD--S---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~--~---~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~ 111 (429)
..+|||+||.||.+..-..+ ++.++ ||++++.. + -...|++| |+++++.+.
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 47999999999998665333 33333 99999987 3 34689999 888888888
Q ss_pred CHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcC-CcccceEEccCCCCCHHHHHH
Q 014165 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG-KKIKDAVVTVPAYFNDAQRQA 190 (429)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~itvP~~~~~~~r~~ 190 (429)
+....++++ +|.... .++...+++|+++....... ....++++++|+..++.+|++
T Consensus 63 ni~aiRPmk--------------------dGVIAd---~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIVAIRPMK--------------------DGVIAD---FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred CceEEeecC--------------------CcEeec---HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 876666653 444333 35556666666665543221 233579999999999999999
Q ss_pred HHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHH
Q 014165 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (429)
Q Consensus 191 l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~ 270 (429)
+++++..+|.+.+.+++||+|||+..+.....+. .-++||+|+||||++++..++.. .+.+...||+.+|+.+.
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~-G~mvvDIGgGTTevaVISlggiv-----~~~Sirv~GD~~De~Ii 193 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPT-GSMVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAII 193 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCcccCCC-CCEEEEeCCCceeEEEEEecCEE-----EEeeEEEecchhhHHHH
Confidence 9999999999999999999999999988777533 56999999999999999998876 46678999999999999
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc------eEEEEE--ecccCCcceeeeecHHHHHHHhHHHH
Q 014165 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEI--ESLFDGIDFSEPLTRARFEELNNDLF 342 (429)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~------~~~~~i--~~~~~~~~~~~~i~~~~~~~~~~~~~ 342 (429)
+++ +++|+..+.+ +.+|++|.+..... ..++++ .....|.+..++++.+++.+++++.+
T Consensus 194 ~yv----r~~~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v 260 (342)
T COG1077 194 VYV----RKKYNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPL 260 (342)
T ss_pred HHH----HHHhCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHH
Confidence 999 7777888877 88999998875332 223333 44667888899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC--cCCC-CeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 343 RKTMGPVKKAMEDAGLE--KNQI-DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 343 ~~i~~~i~~~l~~~~~~--~~~~-~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
++|.+.++..|+++... .+-+ ..++++||+|.+.++.+.|.+.. +.++....+|..+||.|+.+....+....+
T Consensus 261 ~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~~~~~ 337 (342)
T COG1077 261 NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALDLLKK 337 (342)
T ss_pred HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhHhhhh
Confidence 99999999999997543 2223 45999999999999999999998 899999999999999999999988776655
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=1.1e-28 Score=222.93 Aligned_cols=201 Identities=24% Similarity=0.357 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEE
Q 014165 149 PEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 228 (429)
Q Consensus 149 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~l 228 (429)
.-+....+|+++++.++..++.+..++++|||++|++.+|+.+.++++.+|++.+.++.||.|++++|... ..+
T Consensus 38 d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------~~~ 111 (239)
T TIGR02529 38 DFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------NGA 111 (239)
T ss_pred EhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------CcE
Confidence 34677889999999888777777789999999999999999999999999999999999999999987543 259
Q ss_pred EEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccC
Q 014165 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 308 (429)
Q Consensus 229 vvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~ 308 (429)
++|+|++|||+++++.+...+ .+...+||+++|+.|.+.+ +.+ . .+||++|+.+.
T Consensus 112 vvDiGggtt~i~i~~~G~i~~-----~~~~~~GG~~it~~Ia~~~--------~i~--~---------~~AE~~K~~~~- 166 (239)
T TIGR02529 112 VVDVGGGTTGISILKKGKVIY-----SADEPTGGTHMSLVLAGAY--------GIS--F---------EEAEEYKRGHK- 166 (239)
T ss_pred EEEeCCCcEEEEEEECCeEEE-----EEeeecchHHHHHHHHHHh--------CCC--H---------HHHHHHHHhcC-
Confidence 999999999999987554332 4567899999999987654 222 1 78999998654
Q ss_pred CceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCC
Q 014165 309 QHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG 388 (429)
Q Consensus 309 ~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~ 388 (429)
..+++.+++++.++++.+.+++.+++. .++.|+|+||+|++|++++.+++.| +
T Consensus 167 ---------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~l-g 219 (239)
T TIGR02529 167 ---------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQL-G 219 (239)
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHh-C
Confidence 245677889999999999999999864 3678999999999999999999999 8
Q ss_pred CCCCCCCCchhHHHhHHHH
Q 014165 389 KEPNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 389 ~~v~~~~~p~~avA~Ga~l 407 (429)
.++..+.||++++|.|+++
T Consensus 220 ~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 220 LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CCcccCCCCCeehhheeec
Confidence 8999999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=2e-26 Score=212.05 Aligned_cols=202 Identities=27% Similarity=0.371 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEE
Q 014165 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 229 (429)
Q Consensus 150 ~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lv 229 (429)
-+.....++++++.++...+.++..+++++|..++..+++.+.++++.+|++...++.||.|++.++... ..++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEE
Confidence 3455667777778887777777788999999999999999999999999999999999999999876442 1599
Q ss_pred EEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCC
Q 014165 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ 309 (429)
Q Consensus 230 vDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~ 309 (429)
+|+|+|||++++++.+... .....++||++||+.|++++. . + .++||++|+.++
T Consensus 140 vDIGggtt~i~v~~~g~~~-----~~~~~~~GG~~it~~Ia~~l~--------i--~---------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILKDGKVV-----YSADEPTGGTHMSLVLAGAYG--------I--S---------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEECCeEE-----EEecccCchHHHHHHHHHHhC--------C--C---------HHHHHHHHhccC--
Confidence 9999999999998754333 235689999999999987752 1 1 178899997642
Q ss_pred ceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCC
Q 014165 310 HQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK 389 (429)
Q Consensus 310 ~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~ 389 (429)
+++++.++++|.++++.+.+++.++.. .++.|+|+||+|++|++++.+++.| +.
T Consensus 194 --------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~ 247 (267)
T PRK15080 194 --------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GL 247 (267)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CC
Confidence 357789999999999999999999863 4789999999999999999999999 88
Q ss_pred CCCCCCCchhHHHhHHHHHH
Q 014165 390 EPNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 390 ~v~~~~~p~~avA~Ga~l~a 409 (429)
++..+.+|++++|.|+++++
T Consensus 248 ~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccCCCchHHHHHHHHhhC
Confidence 89999999999999999874
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.92 E-value=2.9e-23 Score=203.60 Aligned_cols=196 Identities=20% Similarity=0.237 Sum_probs=150.7
Q ss_pred HHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 014165 188 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (429)
Q Consensus 188 r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~ 267 (429)
.+.+.++++.+|++...++.||.|++.++... ..+...++++|+|+||||+++++.+... .....++||+++++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~-~e~~~gv~vvDiGggtTdisv~~~G~l~-----~~~~i~~GG~~it~ 241 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTE-DERELGVCVVDIGGGTMDIAVYTGGALR-----HTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcCh-hhhhcCeEEEEeCCCceEEEEEECCEEE-----EEeeeechHHHHHH
Confidence 55567799999999999999999999988444 4457789999999999999999843323 35568999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCC------ceEEEEEecccCCcceeeeecHHHHHHHhHHH
Q 014165 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNNDL 341 (429)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~------~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~ 341 (429)
.|++.+. +.. ..||++|..+... ....+.++...+ .....++++++.+++++.
T Consensus 242 dIa~~l~----------i~~---------~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~--~~~~~i~~~~l~~ii~~r 300 (420)
T PRK09472 242 DIAYAFG----------TPP---------SDAEAIKVRHGCALGSIVGKDESVEVPSVGG--RPPRSLQRQTLAEVIEPR 300 (420)
T ss_pred HHHHHhC----------cCH---------HHHHHHHHhcceeccccCCCCceeEecCCCC--CCCeEEcHHHHHHHHHHH
Confidence 9976651 222 8899999876532 223444443222 223578999999999999
Q ss_pred HHHHHHHHHHHH-------HHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCC------------CCCchhHHH
Q 014165 342 FRKTMGPVKKAM-------EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVA 402 (429)
Q Consensus 342 ~~~i~~~i~~~l-------~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~------------~~~p~~avA 402 (429)
+++|++.+.+.+ ...+.....+++|+|+||+|++|++.+.+++.|+ .+++. ..+|.+++|
T Consensus 301 ~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata 379 (420)
T PRK09472 301 YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTA 379 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHH
Confidence 999999887655 3445555568899999999999999999999993 33332 248999999
Q ss_pred hHHHHHHHh
Q 014165 403 YGAAVQGGI 411 (429)
Q Consensus 403 ~Ga~l~a~~ 411 (429)
.|+++++..
T Consensus 380 ~Gl~~~~~~ 388 (420)
T PRK09472 380 VGLLHYGKE 388 (420)
T ss_pred HHHHHHhhh
Confidence 999999875
No 31
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.91 E-value=6.9e-23 Score=198.74 Aligned_cols=194 Identities=23% Similarity=0.321 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 014165 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (429)
Q Consensus 186 ~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~i 265 (429)
...+.+.++++.+|++...++.||.|+++++.... .....++++|+|+||||+++++.+... ..+...+||+++
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-~~~~~~~vvDiG~gtt~i~i~~~g~~~-----~~~~i~~GG~~i 231 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-EKELGVCLIDIGGGTTDIAVYTGGSIR-----YTKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-hhcCCEEEEEeCCCcEEEEEEECCEEE-----EEeeecchHHHH
Confidence 55677888999999999999999999999884433 345679999999999999999754322 245578999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCC------ceEEEEEecccCCcceeeeecHHHHHHHhH
Q 014165 266 DQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNN 339 (429)
Q Consensus 266 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~------~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~ 339 (429)
|+.+.+.+. .. ..+||++|+.++.. ....+.++.. +......++++++.++++
T Consensus 232 t~~i~~~l~----------~~---------~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~~l~~ii~ 290 (371)
T TIGR01174 232 TKDIAKALR----------TP---------LEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRKELAEIIE 290 (371)
T ss_pred HHHHHHHhC----------CC---------HHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHHHHHHHHH
Confidence 999877541 11 28899999998753 2344555433 235568899999999999
Q ss_pred HHHHHHHHHHH-HHHHHcCCCcCCCCe-EEEEcCCCCcHHHHHHHHhhcCCCCCCC------------CCCchhHHHhHH
Q 014165 340 DLFRKTMGPVK-KAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAYGA 405 (429)
Q Consensus 340 ~~~~~i~~~i~-~~l~~~~~~~~~~~~-V~l~GG~s~~~~l~~~l~~~~~~~~v~~------------~~~p~~avA~Ga 405 (429)
+.++++.+.+. +.+++.+.. ..++. |+|+||+|++|++++.+++.|+ .+++. ..+|.+++|.|+
T Consensus 291 ~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl 368 (371)
T TIGR01174 291 ARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAVGL 368 (371)
T ss_pred HHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHHHH
Confidence 99999999997 999987765 45655 9999999999999999999994 22211 238999999999
Q ss_pred HHH
Q 014165 406 AVQ 408 (429)
Q Consensus 406 ~l~ 408 (429)
++|
T Consensus 369 ~~~ 371 (371)
T TIGR01174 369 LLY 371 (371)
T ss_pred HhC
Confidence 874
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.88 E-value=1.1e-20 Score=180.41 Aligned_cols=200 Identities=26% Similarity=0.388 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 014165 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (429)
Q Consensus 186 ~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~i 265 (429)
...+.|.+|.+++|+....++-+|.|++.+. ++...+...+++||+|+||||+++++-+... .....++||+++
T Consensus 165 ~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~-L~~dEkelGv~lIDiG~GTTdIai~~~G~l~-----~~~~ipvgG~~v 238 (418)
T COG0849 165 NILENLEKCVERAGLKVDNIVLEPLASALAV-LTEDEKELGVALIDIGGGTTDIAIYKNGALR-----YTGVIPVGGDHV 238 (418)
T ss_pred HHHHHHHHHHHHhCCCeeeEEEehhhhhhhc-cCcccHhcCeEEEEeCCCcEEEEEEECCEEE-----EEeeEeeCccHH
Confidence 3467789999999999999999999999887 5555578899999999999999999965544 366699999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCce------EEEEEecccCCcceeeeecHHHHHHHhH
Q 014165 266 DQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ------VRVEIESLFDGIDFSEPLTRARFEELNN 339 (429)
Q Consensus 266 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~------~~~~i~~~~~~~~~~~~i~~~~~~~~~~ 339 (429)
++.|++-+.-.+ +.||++|..+..... ..+.++.. |.+....+++.++.++++
T Consensus 239 T~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~v--g~~~~~~~t~~~ls~II~ 297 (418)
T COG0849 239 TKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSV--GSDIPRQVTRSELSEIIE 297 (418)
T ss_pred HHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccC--CCcccchhhHHHHHHHHH
Confidence 999988763222 899999999864432 23444432 333467889999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcC-----CCC--CCC----CCCchhHHHhHHHHH
Q 014165 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD-----GKE--PNK----GVNPDEAVAYGAAVQ 408 (429)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~-----~~~--v~~----~~~p~~avA~Ga~l~ 408 (429)
+.+.+++.++++.|++.+.....+..|+|+||++.++++.+..++.|+ +.+ +.- ..+|.++.|.|+.++
T Consensus 298 aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~ 377 (418)
T COG0849 298 ARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLY 377 (418)
T ss_pred hhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHH
Confidence 999999999999999998775667899999999999999999999994 111 111 236899999999999
Q ss_pred HHhh
Q 014165 409 GGIL 412 (429)
Q Consensus 409 a~~~ 412 (429)
+..+
T Consensus 378 ~~~~ 381 (418)
T COG0849 378 GALM 381 (418)
T ss_pred Hhhc
Confidence 9975
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.80 E-value=1.4e-18 Score=168.86 Aligned_cols=302 Identities=18% Similarity=0.141 Sum_probs=194.7
Q ss_pred EEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeC----------CcEEEcHhHHHhhhhCCCceecchhhhcCC
Q 014165 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD----------SERLIGEAAKNQAAVNPDRTIFDVKRLIGR 108 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~----------~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~ 108 (429)
|.||+||.++++++..++.+..+ +||+++... ....+|++|...... ....+
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~~--------- 63 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLELI--------- 63 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-ceEEc---------
Confidence 78999999999999988755433 277776542 245678776332110 00000
Q ss_pred CCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHH
Q 014165 109 KFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQR 188 (429)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r 188 (429)
..+++|... .-+.+..+++++...... .......+++++|..++...|
T Consensus 64 ----------------------------~P~~~G~i~---d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 64 ----------------------------YPIEHGIVV---DWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred ----------------------------ccccCCEEe---CHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHH
Confidence 011133222 334556777777654322 122346799999999998888
Q ss_pred HHHHH-HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 014165 189 QATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (429)
Q Consensus 189 ~~l~~-a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~ 267 (429)
+.+.+ +++..+++.+.+++++.+++++++. .+.+|||+|+++|+++.+..+.. .........+||.++|+
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~G~~---~~~~~~~~~~GG~~l~~ 182 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVYDGYV---LPHAIKRLDLAGRDLTR 182 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEECCEE---chhhheeccccHHHHHH
Confidence 88877 4667899999999999999998854 56799999999999987774322 11223457899999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCce---EE-----------EEEecccCCcceeeeecHHH
Q 014165 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ---VR-----------VEIESLFDGIDFSEPLTRAR 333 (429)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~---~~-----------~~i~~~~~~~~~~~~i~~~~ 333 (429)
.|.+++..+. ...... .-...++.+|+.+..... .+ .....+.++. .+.++.+.
T Consensus 183 ~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er 250 (371)
T cd00012 183 YLKELLRERG---YELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNER 250 (371)
T ss_pred HHHHHHHhcC---CCccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHH
Confidence 9999884321 100111 112556777776532110 00 0001122332 34445443
Q ss_pred H---HHHhHH-----HHHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC----C-----CCCCCC
Q 014165 334 F---EELNND-----LFRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD----G-----KEPNKG 394 (429)
Q Consensus 334 ~---~~~~~~-----~~~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~----~-----~~v~~~ 394 (429)
+ +.++.| ....|.+.|.+.++.+..+ ....+.|+|+||+|++|+|.+.|.+.+. . ..+...
T Consensus 251 ~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~ 330 (371)
T cd00012 251 FRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAP 330 (371)
T ss_pred hhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccC
Confidence 3 334444 2347888888888887543 3346789999999999999999998873 1 234556
Q ss_pred CCchhHHHhHHHHHHHh
Q 014165 395 VNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 395 ~~p~~avA~Ga~l~a~~ 411 (429)
.+|.+++.+|+.++|..
T Consensus 331 ~~~~~~aw~G~si~as~ 347 (371)
T cd00012 331 PERKYSVWLGGSILASL 347 (371)
T ss_pred CCccccEEeCchhhcCc
Confidence 78999999999999976
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.78 E-value=2.5e-18 Score=167.39 Aligned_cols=303 Identities=18% Similarity=0.177 Sum_probs=190.2
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC---------cEEEcHhHHHhhhhCCCceecchhhhcC
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---------ERLIGEAAKNQAAVNPDRTIFDVKRLIG 107 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~~~~l~ 107 (429)
..|+||+||.++++++..++.|.++ +||+++...+ ..++|+++....... .. ..
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~--~~----~~--- 64 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGL--EL----KY--- 64 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcCCCc--ee----cC---
Confidence 4699999999999999988766544 3888776533 245677662211000 00 00
Q ss_pred CCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHH
Q 014165 108 RKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ 187 (429)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~ 187 (429)
.+++|.. ..-+.+..+++++...... .......++++.|...+...
T Consensus 65 ------------------------------P~~~G~i---~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 65 ------------------------------PIEHGIV---ENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred ------------------------------CCcCCEE---eCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHH
Confidence 0113322 3345566777777764211 12233578999998888999
Q ss_pred HHHHHHHH-HHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHH
Q 014165 188 RQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (429)
Q Consensus 188 r~~l~~a~-~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id 266 (429)
|+.+.+.+ +..+++.+.+++++.+++++++ ..+.+|||+|+++|+++.+..+.. +........+||.++|
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~~G~~---~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVVDGYV---LPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEECCEE---chhhheeccCcHHHHH
Confidence 99988765 5779999999999999999875 456799999999999988773321 2222344789999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCce---------------EEEE-EecccCCcceeeeec
Q 014165 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ---------------VRVE-IESLFDGIDFSEPLT 330 (429)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~---------------~~~~-i~~~~~~~~~~~~i~ 330 (429)
+.|.+++... +..... ..-...++.+|+++..... .... ...+.+|..+. +.
T Consensus 182 ~~l~~~l~~~-----~~~~~~-----~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~--~~ 249 (373)
T smart00268 182 DYLKELLSER-----GYQFNS-----SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIK--VG 249 (373)
T ss_pred HHHHHHHHhc-----CCCCCc-----HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEE--EC
Confidence 9999887431 011110 0112455566655421100 0000 01122333332 23
Q ss_pred HHHH---HHHhHHH-----HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC-----C--CCCCC
Q 014165 331 RARF---EELNNDL-----FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD-----G--KEPNK 393 (429)
Q Consensus 331 ~~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~-----~--~~v~~ 393 (429)
.+.+ +.++.|. ...|.+.|.+.++++..+ ..-.+.|+|+||+|++|+|.+.|.+.+. . ..+..
T Consensus 250 ~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~ 329 (373)
T smart00268 250 NERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIA 329 (373)
T ss_pred hHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEec
Confidence 2222 2334442 347788888888876533 2234679999999999999999988872 1 23444
Q ss_pred CCCchhHHHhHHHHHHHh
Q 014165 394 GVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 394 ~~~p~~avA~Ga~l~a~~ 411 (429)
..++..+...|+.++|..
T Consensus 330 ~~~~~~~~W~G~silas~ 347 (373)
T smart00268 330 PPERKYSVWLGGSILASL 347 (373)
T ss_pred CCCCccceEeCcccccCc
Confidence 557789999999998866
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.75 E-value=5.6e-16 Score=147.83 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=137.7
Q ss_pred ceEEccCCCCCHHH-HHHHHHHHHHc------------CCceeeeccchhHHHHHhhhccC-------CCccEEEEEEeC
Q 014165 174 DAVVTVPAYFNDAQ-RQATKDAGIIA------------GLNVARIINEPTAAAIAYGLDKK-------GGEKNILVFDLG 233 (429)
Q Consensus 174 ~~~itvP~~~~~~~-r~~l~~a~~~a------------g~~~~~~v~E~~Aaa~~~~~~~~-------~~~~~~lvvDiG 233 (429)
.++.+.|..+...+ ++.+++.+... .+..+.+++||.++++.+..... .....+++||+|
T Consensus 114 ~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG 193 (344)
T PRK13917 114 VVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFG 193 (344)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcC
Confidence 35579998875433 46677665321 23457789999999887755432 144578999999
Q ss_pred CCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEE
Q 014165 234 GGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVR 313 (429)
Q Consensus 234 ~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~ 313 (429)
++|||+++++- ..+ ....+.+...|...+.+.+.+.+.. +.++..+.. ..++++-+. . .
T Consensus 194 ~~TtD~~v~~~--~~~-~~~~s~s~~~G~~~~~~~I~~~i~~---~~~~~~~~~---------~~ie~~l~~---g---~ 252 (344)
T PRK13917 194 SGTTDLDTIQN--LKR-VEEESFVIPKGTIDVYKRIASHISK---KEEGASITP---------YMLEKGLEY---G---A 252 (344)
T ss_pred CCcEEEEEEeC--cEE-cccccccccchHHHHHHHHHHHHHh---hCCCCCCCH---------HHHHHHHHc---C---c
Confidence 99999999872 222 2223455789999999999888732 222333332 233333221 0 1
Q ss_pred EEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCC
Q 014165 314 VEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK 393 (429)
Q Consensus 314 ~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~ 393 (429)
+.+ ..+.. +.+ .+++.++++++++++...+...+.. ..+++.|+|+||+|+ .+++.|++.||+. ..
T Consensus 253 i~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~--ll~~~lk~~f~~~--~~ 318 (344)
T PRK13917 253 CKL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGAN--IFFDSLSHWYSDV--EK 318 (344)
T ss_pred EEe---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHH--HHHHHHHHHcCCe--EE
Confidence 111 11112 222 3456667788888887777776653 246889999999998 5999999999754 56
Q ss_pred CCCchhHHHhHHHHHHHhhcCC
Q 014165 394 GVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 394 ~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
..||++|+|+|...+|..+.+.
T Consensus 319 ~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 319 ADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred cCChHHHHHHHHHHHHHHHhcc
Confidence 6799999999999999877654
No 36
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.74 E-value=2.9e-16 Score=154.47 Aligned_cols=312 Identities=17% Similarity=0.144 Sum_probs=191.4
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC-------------cEEEcHhHHHhhhhCCCceecch
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-------------ERLIGEAAKNQAAVNPDRTIFDV 102 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~-------------~~~~G~~A~~~~~~~~~~~i~~~ 102 (429)
...|.||+|+.+++++++.++.|.++ +||++....+ .+++|++|.... .
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~------ 65 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----K------ 65 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCc----C------
Confidence 34799999999999999987776544 3777765322 234565543210 0
Q ss_pred hhhcCCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCC
Q 014165 103 KRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAY 182 (429)
Q Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~ 182 (429)
...+...+++|....| +.+..+++++..... ........++++.|..
T Consensus 66 -----------------------------~~~l~~Pi~~G~I~dw---d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~ 112 (414)
T PTZ00280 66 -----------------------------SYTLTYPMKHGIVEDW---DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPM 112 (414)
T ss_pred -----------------------------CcEEecCccCCEeCCH---HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCC
Confidence 0011111124433333 445566666543221 1222334689999999
Q ss_pred CCHHHHHHHHHH-HHHcCCceeeeccchhHHHHHhhhccCC----CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCC
Q 014165 183 FNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKG----GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGD 257 (429)
Q Consensus 183 ~~~~~r~~l~~a-~~~ag~~~~~~v~E~~Aaa~~~~~~~~~----~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~ 257 (429)
++..+|+.+.+. .+..+++.+.+..++.++++++...... ...+-+|||+|.++|+++-+..+ .. .......
T Consensus 113 ~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G--~~-l~~~~~~ 189 (414)
T PTZ00280 113 NPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDG--YV-IGSSIKH 189 (414)
T ss_pred CcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECC--EE-cccceEE
Confidence 999999998775 5666999999999999999876332211 23456999999999999866632 21 1122334
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc-----------------eEEEEEeccc
Q 014165 258 THLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-----------------QVRVEIESLF 320 (429)
Q Consensus 258 ~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~-----------------~~~~~i~~~~ 320 (429)
.++||.++++.|.+++.. +. ..+... .....++.+|+++.-.. ...+..+...
T Consensus 190 ~~~GG~~lt~~L~~lL~~----~~-~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~ 259 (414)
T PTZ00280 190 IPLAGRDITNFIQQMLRE----RG-EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSV 259 (414)
T ss_pred ecCcHHHHHHHHHHHHHH----cC-CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCC
Confidence 689999999999998743 21 112110 11245666776653211 0112222222
Q ss_pred CCcceeeeecHHHHH---HHhHHHH------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcCCC
Q 014165 321 DGIDFSEPLTRARFE---ELNNDLF------RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDGK 389 (429)
Q Consensus 321 ~~~~~~~~i~~~~~~---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~ 389 (429)
+|....+.+..+.+. -+|.|.+ ..|.+.|.+.+.++..+ ..-.+.|+|+||+|.+|++.+.|++.+...
T Consensus 260 ~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~ 339 (414)
T PTZ00280 260 TKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKR 339 (414)
T ss_pred CCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHh
Confidence 234446677766653 3455532 25778888888887543 334578999999999999999998877321
Q ss_pred -----------------------CCCCCCCchhHHHhHHHHHHHh
Q 014165 390 -----------------------EPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 390 -----------------------~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
++..+.+..+++..|+.++|..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~ 384 (414)
T PTZ00280 340 VDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASS 384 (414)
T ss_pred ccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccC
Confidence 1222223357889999999863
No 37
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.71 E-value=1.4e-15 Score=144.34 Aligned_cols=204 Identities=19% Similarity=0.202 Sum_probs=133.4
Q ss_pred cccceEEccCCCCCHHHHHHHHHHHHHc---------CCceeeeccchhHHHHHhhhccC---CCccEEEEEEeCCCceE
Q 014165 171 KIKDAVVTVPAYFNDAQRQATKDAGIIA---------GLNVARIINEPTAAAIAYGLDKK---GGEKNILVFDLGGGTFD 238 (429)
Q Consensus 171 ~~~~~~itvP~~~~~~~r~~l~~a~~~a---------g~~~~~~v~E~~Aaa~~~~~~~~---~~~~~~lvvDiG~~ttd 238 (429)
.+..++++.|..+...+++.|++.+... .+..+.+++||.+|.+.+..... .....++|||+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999888899998876542 44668889999999887755321 15667899999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHH-HHHHccCCceEEEEE
Q 014165 239 VSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKD-ISKDKRAIGKLRREAER-AKRALSSQHQVRVEI 316 (429)
Q Consensus 239 ~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~-~~~~~~~~~~L~~~~e~-~K~~l~~~~~~~~~i 316 (429)
+.+++ +... ....+++...|...+-+.+.+.+ .++++.. ... . ...++ ++.. .. ..+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i----~~~~g~~~~~~-~-------~~i~~~l~~g----~~--~~~ 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEI----SKDIGTPAYRD-I-------DRIDLALRTG----KQ--PRI 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHH----HhhcCCCCccC-H-------HHHHHHHHhC----Cc--eee
Confidence 98775 3332 22335557789888888887777 5555544 221 1 12222 1111 00 000
Q ss_pred ecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCC
Q 014165 317 ESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVN 396 (429)
Q Consensus 317 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~ 396 (429)
.+.. +.++ ++.+..+..++++...+.+.+.. ..+++.|+++||+|. .+++.|++.||+..+....|
T Consensus 240 ----~gk~--~di~--~~~~~~~~~~~~~v~~i~~~~~~----~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~d 305 (320)
T TIGR03739 240 ----YQKP--VDIK--RCLELAETVAQQAVSTMMTWIGA----PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDE 305 (320)
T ss_pred ----ccee--cCch--HHHHHHHHHHHHHHHHHHHhccc----CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCC
Confidence 1111 1222 22223344444454444444421 234889999999988 89999999998777767789
Q ss_pred chhHHHhHHHHHH
Q 014165 397 PDEAVAYGAAVQG 409 (429)
Q Consensus 397 p~~avA~Ga~l~a 409 (429)
|++|+|+|-..+|
T Consensus 306 p~~ANarG~~~~g 318 (320)
T TIGR03739 306 PMFANVRGFQIAG 318 (320)
T ss_pred cHHHHHHHHHHhh
Confidence 9999999998876
No 38
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.69 E-value=9e-17 Score=133.88 Aligned_cols=196 Identities=27% Similarity=0.389 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCC
Q 014165 155 MILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGG 234 (429)
Q Consensus 155 ~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~ 234 (429)
.+.+.++++++++++....+..-++|..-.....+...+.++.||+....+++||.|++.-..+... .|||+||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiGG 149 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeCC
Confidence 4566777888999998888888899987765566667788899999999999999999876655555 8999999
Q ss_pred CceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEE
Q 014165 235 GTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRV 314 (429)
Q Consensus 235 ~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~ 314 (429)
|||-+++++.+...| +...+.||.+++-.|+-. ++.++ +++|+.|+.-.
T Consensus 150 GTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k------- 198 (277)
T COG4820 150 GTTGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHK------- 198 (277)
T ss_pred CcceeEEEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccc-------
Confidence 999999999876664 556888998887666432 23332 77888887422
Q ss_pred EEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCC
Q 014165 315 EIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG 394 (429)
Q Consensus 315 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~ 394 (429)
..+|+-..++|.++++.+.+.+.++..+ +.-+.|+||.|..|++.+..+++| ..++..+
T Consensus 199 ---------------~~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P 257 (277)
T COG4820 199 ---------------KGEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLP 257 (277)
T ss_pred ---------------cchhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccccC
Confidence 1223345668999999999999998765 556999999999999999999999 8999999
Q ss_pred CCchhHHHhHHHHH
Q 014165 395 VNPDEAVAYGAAVQ 408 (429)
Q Consensus 395 ~~p~~avA~Ga~l~ 408 (429)
..|.+---.|-++.
T Consensus 258 ~~p~y~TPLgIA~s 271 (277)
T COG4820 258 QHPLYMTPLGIASS 271 (277)
T ss_pred CCcceechhhhhhc
Confidence 88888766665543
No 39
>PTZ00452 actin; Provisional
Probab=99.67 E-value=4.3e-15 Score=143.72 Aligned_cols=305 Identities=16% Similarity=0.152 Sum_probs=189.6
Q ss_pred CCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC----------cEEEcHhHHHhhhhCCCceecchhh
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKR 104 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~----------~~~~G~~A~~~~~~~~~~~i~~~~~ 104 (429)
+...|.||+|+.+++++++.++.|..+. ||++..... ..++|+++.... .
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~------ 63 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCF--------PAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------G------ 63 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEe--------cceeEEECCccccccccccceEEChhhhccc------c------
Confidence 3457999999999999999888776543 777665332 234566552210 0
Q ss_pred hcCCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCC
Q 014165 105 LIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFN 184 (429)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~ 184 (429)
...+...+++|....| +.+..+++|+..... ........+++|-|..++
T Consensus 64 ---------------------------~~~l~~Pi~~G~I~dw---d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~ 112 (375)
T PTZ00452 64 ---------------------------VLAIKEPIQNGIINSW---DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNS 112 (375)
T ss_pred ---------------------------CcEEcccCcCCEEcCH---HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCC
Confidence 0001111124444444 334456666543221 123334578999999999
Q ss_pred HHHHHHHHHH-HHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchH
Q 014165 185 DAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (429)
Q Consensus 185 ~~~r~~l~~a-~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~ 263 (429)
...|+.|.++ ++..+++.+.+...+.+++++++. .+-+|||+|.+.|+++-+..+ . ..........+||.
T Consensus 113 ~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~dG--~-~l~~~~~r~~~gG~ 183 (375)
T PTZ00452 113 KFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVFEG--H-QIPQAITKINLAGR 183 (375)
T ss_pred HHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEECC--E-EeccceEEeeccch
Confidence 9999998775 666899999999999999988743 356999999999999766532 1 22223334689999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCce------------EEEE-EecccCCcceeeeec
Q 014165 264 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ------------VRVE-IESLFDGIDFSEPLT 330 (429)
Q Consensus 264 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~------------~~~~-i~~~~~~~~~~~~i~ 330 (429)
++++.|.+.|.++ +..+..... ...++.+|+.+.-... .... ...+.+|.. +.+.
T Consensus 184 ~lt~~L~~lL~~~-----~~~~~~~~~-----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~--i~l~ 251 (375)
T PTZ00452 184 LCTDYLTQILQEL-----GYSLTEPHQ-----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNI--LTIK 251 (375)
T ss_pred HHHHHHHHHHHhc-----CCCCCCHHH-----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCE--EEee
Confidence 9999998887321 111211000 1335556655431110 0000 011234443 4455
Q ss_pred HHHH---HHHhHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC-----C--CCCCC
Q 014165 331 RARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD-----G--KEPNK 393 (429)
Q Consensus 331 ~~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~-----~--~~v~~ 393 (429)
.+.+ |-+|+|.+ ..|.+.+.+.+.+++.+ ..-.+.|+|+||+|.+|++.+.|++.+. . .++..
T Consensus 252 ~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~ 331 (375)
T PTZ00452 252 SQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAA 331 (375)
T ss_pred hHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEec
Confidence 5544 34445543 35777888888887543 3446889999999999999999888772 1 23444
Q ss_pred CCCchhHHHhHHHHHHHh
Q 014165 394 GVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 394 ~~~p~~avA~Ga~l~a~~ 411 (429)
+.++.+++..|+.++|..
T Consensus 332 ~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 332 PPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred CCCcceeEEECchhhcCc
Confidence 556778999999999964
No 40
>PTZ00281 actin; Provisional
Probab=99.65 E-value=2.1e-15 Score=146.25 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=189.0
Q ss_pred CCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC----------cEEEcHhHHHhhhhCCCceecchhh
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKR 104 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~----------~~~~G~~A~~~~~~~~~~~i~~~~~ 104 (429)
....|.||+|+.+++++++.++.|..+ +||++...+. ..++|+++.... .
T Consensus 5 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~--------- 64 (376)
T PTZ00281 5 DVQALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---G--------- 64 (376)
T ss_pred cCCeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhccc---c---------
Confidence 344799999999999999988877644 3666654221 334565543210 0
Q ss_pred hcCCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCC
Q 014165 105 LIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFN 184 (429)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~ 184 (429)
...+...+++|....+ +.+..+++++..... ........++++-|..++
T Consensus 65 ---------------------------~~~l~~Pi~~G~i~dw---d~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~ 113 (376)
T PTZ00281 65 ---------------------------ILTLKYPIEHGIVTNW---DDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNP 113 (376)
T ss_pred ---------------------------CcEEeccCcCCEEcCH---HHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCc
Confidence 0001111123433333 444556666554211 122334578899999999
Q ss_pred HHHHHHHHH-HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchH
Q 014165 185 DAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (429)
Q Consensus 185 ~~~r~~l~~-a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~ 263 (429)
...|+.+.+ +.+..+++.+.+..++.+++++++. .+.+|||+|.+.|.++-+..+... .......++||.
T Consensus 114 ~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~PV~dG~~~---~~~~~~~~~GG~ 184 (376)
T PTZ00281 114 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVMDSGDGVSHTVPIYEGYAL---PHAILRLDLAGR 184 (376)
T ss_pred HHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ceEEEEECCCceEEEEEEEecccc---hhheeeccCcHH
Confidence 999999877 5777899999999999999987643 356999999999999755543221 223344789999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc---e---------EEEE-EecccCCcceeeeec
Q 014165 264 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH---Q---------VRVE-IESLFDGIDFSEPLT 330 (429)
Q Consensus 264 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~---~---------~~~~-i~~~~~~~~~~~~i~ 330 (429)
++++.|.+.+..+ +..+... .=...++.+|+.+.-.. . .... ...+.+|.. +.+.
T Consensus 185 ~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~--i~i~ 252 (376)
T PTZ00281 185 DLTDYMMKILTER-----GYSFTTT-----AEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQV--ITIG 252 (376)
T ss_pred HHHHHHHHHHHhc-----CCCCCcH-----HHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCE--EEee
Confidence 9999998887431 1111110 01145667777753111 0 0000 011233333 4445
Q ss_pred HHHH---HHHhHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC-------CCCCCC
Q 014165 331 RARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD-------GKEPNK 393 (429)
Q Consensus 331 ~~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~-------~~~v~~ 393 (429)
.+.+ +.+|+|.+ ..|.+.|.+.+.++..+ ..-.+.|+|+||+|.+|++.+.|++.+. ..++..
T Consensus 253 ~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~ 332 (376)
T PTZ00281 253 NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIA 332 (376)
T ss_pred HHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEec
Confidence 4433 34455532 25777788888876543 2335789999999999999998888762 123445
Q ss_pred CCCchhHHHhHHHHHHHh
Q 014165 394 GVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 394 ~~~p~~avA~Ga~l~a~~ 411 (429)
+.++.+++.+|+.++|..
T Consensus 333 ~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 333 PPERKYSVWIGGSILASL 350 (376)
T ss_pred CCCCceeEEECcccccCc
Confidence 557789999999999974
No 41
>PTZ00004 actin-2; Provisional
Probab=99.64 E-value=5.2e-15 Score=143.70 Aligned_cols=303 Identities=15% Similarity=0.152 Sum_probs=187.8
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC----------cEEEcHhHHHhhhhCCCceecchhhh
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKRL 105 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~----------~~~~G~~A~~~~~~~~~~~i~~~~~~ 105 (429)
...|.||+|+.+++++++.++.|..+ +||++..... ..++|+++.... . ..
T Consensus 6 ~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~-~~----- 66 (378)
T PTZ00004 6 TNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR-----G-IL----- 66 (378)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc-----c-cc-----
Confidence 34799999999999999988776544 3777765332 344565542210 0 00
Q ss_pred cCCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCH
Q 014165 106 IGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND 185 (429)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~ 185 (429)
.+...+++|....+ +....+++++..... ........++++.|..++.
T Consensus 67 ----------------------------~l~~Pi~~G~i~d~---d~~e~i~~~~~~~~l-~v~~~~~pvllte~~~~~~ 114 (378)
T PTZ00004 67 ----------------------------TLKYPIEHGIVTNW---DDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPK 114 (378)
T ss_pred ----------------------------eEcccCcCCEEcCH---HHHHHHHHHHHHhhc-ccCCccCcceeecCCCCcH
Confidence 00001113333333 444556666443111 1122345688999999999
Q ss_pred HHHHHHHHH-HHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHH
Q 014165 186 AQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (429)
Q Consensus 186 ~~r~~l~~a-~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~ 264 (429)
..|+.+.+. ++..+++.+.+..++.+++++++. .+-+|||+|.+.|+++-+..+ +.........++||.+
T Consensus 115 ~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~pV~dG---~~l~~~~~~~~~GG~~ 185 (378)
T PTZ00004 115 ANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYEG---YSLPHAIHRLDVAGRD 185 (378)
T ss_pred HHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ceEEEEECCCCcEEEEEEECC---EEeecceeeecccHHH
Confidence 999887664 667899999999999999988743 356999999999999766632 1222234457899999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc--------------e-EEEEEecccCCcceeeee
Q 014165 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH--------------Q-VRVEIESLFDGIDFSEPL 329 (429)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~--------------~-~~~~i~~~~~~~~~~~~i 329 (429)
+++.|.+.+..+ +..+... .-...++.+|+.+.-.. . ..... .+.+|.. +.+
T Consensus 186 lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y-~lPdg~~--i~l 252 (378)
T PTZ00004 186 LTEYMMKILHER-----GTTFTTT-----AEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESY-ELPDGTI--ITV 252 (378)
T ss_pred HHHHHHHHHHhc-----CCCCCcH-----HHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEE-ECCCCCE--EEE
Confidence 999999987321 1111110 01134556665542110 0 00111 1234443 344
Q ss_pred cHHHH---HHHhHHH------HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC-------CCCC
Q 014165 330 TRARF---EELNNDL------FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD-------GKEP 391 (429)
Q Consensus 330 ~~~~~---~~~~~~~------~~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~-------~~~v 391 (429)
..+.+ |-+|+|. ...|.+.|.+.+.++..+ ..-...|+|+||+|.+|++.+.|.+.+. ..++
T Consensus 253 ~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v 332 (378)
T PTZ00004 253 GSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKV 332 (378)
T ss_pred cHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEE
Confidence 55443 3455553 345778888888877543 3335789999999999999999888772 1234
Q ss_pred CCCCCchhHHHhHHHHHHHh
Q 014165 392 NKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 392 ~~~~~p~~avA~Ga~l~a~~ 411 (429)
....++.++...|++++|..
T Consensus 333 ~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 333 VAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred ecCCCCceeEEECcccccCc
Confidence 45557889999999999864
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.63 E-value=3.6e-14 Score=136.89 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHcCCceeeeccchhHHHHHhh-----hccCCCcc-EEEEEEeCCCceEEEEEEEeCCeEEEEEecCCC
Q 014165 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYG-----LDKKGGEK-NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDT 258 (429)
Q Consensus 185 ~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~-----~~~~~~~~-~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~ 258 (429)
....+.+.++++.+|++...+..+|.|.+-.+. ........ +++++|+|+++|++++++-+...+ .+..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEEe
Confidence 466778899999999999999999999876663 22222344 499999999999999998665553 5668
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHh
Q 014165 259 HLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELN 338 (429)
Q Consensus 259 ~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~ 338 (429)
.+||.++++.+.+.+ +.+ . ++||++|+....... .-.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~--~---------~~Ae~~k~~~~~~~~---------------------~~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLN--P---------EEAGEAKQQGGLPLL---------------------YDPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCC--H---------HHHHHHHhcCCCCCc---------------------hhHHHH
Confidence 999999999986543 222 2 778888875322110 113456
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCC-------------------CCCc
Q 014165 339 NDLFRKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK-------------------GVNP 397 (429)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~--~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~-------------------~~~p 397 (429)
++.++++...|.+.++-+. .....++.|+|+||++++++|.+.+++.|+ .++.. ...|
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~-~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG-LPTEVANPFALMALDAKVDAGRLAVDAP 335 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC-CCeEecChHHhcccCccCCHHHHHhhhH
Confidence 7788888888888886542 224468999999999999999999999993 32221 1356
Q ss_pred hhHHHhHHHHHH
Q 014165 398 DEAVAYGAAVQG 409 (429)
Q Consensus 398 ~~avA~Ga~l~a 409 (429)
.+++|.|+++++
T Consensus 336 ~~~~a~Glalr~ 347 (348)
T TIGR01175 336 ALMTALGLALRG 347 (348)
T ss_pred HHHHHhhHhhcC
Confidence 789999999875
No 43
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.62 E-value=2.5e-15 Score=147.54 Aligned_cols=314 Identities=18% Similarity=0.186 Sum_probs=186.2
Q ss_pred cCCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC-----cEEEcHhHHHhhhhCCCceecchhhhcCC
Q 014165 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----ERLIGEAAKNQAAVNPDRTIFDVKRLIGR 108 (429)
Q Consensus 34 ~~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~-----~~~~G~~A~~~~~~~~~~~i~~~~~~l~~ 108 (429)
+....|-||+|+.+++++++.++.|..+ +||.+..... ...+|+.+... .....
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~--~~~~~----------- 60 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP--RSNLE----------- 60 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT--GTGEE-----------
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc--hhhee-----------
Confidence 3567899999999999999877766543 3888776543 35778774221 00000
Q ss_pred CCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHH
Q 014165 109 KFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQR 188 (429)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r 188 (429)
+...+++|... .-+.+..+++++..... ........++++.|..++...|
T Consensus 61 --------------------------~~~p~~~g~i~---~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r 110 (393)
T PF00022_consen 61 --------------------------LRSPIENGVIV---DWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQR 110 (393)
T ss_dssp --------------------------EEESEETTEES---SHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHH
T ss_pred --------------------------eeeeccccccc---ccccccccccccccccc-ccccccceeeeeccccCCchhh
Confidence 01111133222 23455666766665431 1223445799999999999999
Q ss_pred HHHHHH-HHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 014165 189 QATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (429)
Q Consensus 189 ~~l~~a-~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~ 267 (429)
+.+.+. ++..+++.+.+++++.+++++++... -+|||+|.+.|.++-+.. +.. +........+||.++++
T Consensus 111 ~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~t------glVVD~G~~~t~v~pV~d--G~~-~~~~~~~~~~GG~~lt~ 181 (393)
T PF00022_consen 111 EKLAEILFEKFGVPSVYFIPSPLLALYASGRTT------GLVVDIGYSSTSVVPVVD--GYV-LPHSIKRSPIGGDDLTE 181 (393)
T ss_dssp HHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSS------EEEEEESSS-EEEEEEET--TEE--GGGBEEES-SHHHHHH
T ss_pred hhhhhhhhcccccceeeeeeccccccccccccc------ccccccceeeeeeeeeee--ccc-cccccccccccHHHHHH
Confidence 988775 56779999999999999998885553 499999999999976652 221 11123346899999999
Q ss_pred HHHHHHHHH-HHHHhCCCCc------ccHHHHHHHHHHHHHHHHHcc---------------CCceEEEEEecccCCcce
Q 014165 268 RVMEYFIKL-IKKKHGKDIS------KDKRAIGKLRREAERAKRALS---------------SQHQVRVEIESLFDGIDF 325 (429)
Q Consensus 268 ~l~~~l~~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~l~---------------~~~~~~~~i~~~~~~~~~ 325 (429)
.|.+.+..+ +.-....... ........-...++.+|+... ......+.+ .+|.
T Consensus 182 ~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~-- 256 (393)
T PF00022_consen 182 YLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ-- 256 (393)
T ss_dssp HHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--
T ss_pred HHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc--
Confidence 998888552 0000000000 001111112244455554431 112222222 2443
Q ss_pred eeeecHHHH---HHHhHHHH------------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC-
Q 014165 326 SEPLTRARF---EELNNDLF------------RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD- 387 (429)
Q Consensus 326 ~~~i~~~~~---~~~~~~~~------------~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~- 387 (429)
.+.+..+.+ +-+|.|.. ..+.+.|.+.+.++..+ ..-...|+|+||+|++|+|.+.|.+.+.
T Consensus 257 ~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~ 336 (393)
T PF00022_consen 257 TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRS 336 (393)
T ss_dssp EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhh
Confidence 344444333 22333322 15788888888887543 2224789999999999999999988773
Q ss_pred ------CCCCCCCC-CchhHHHhHHHHHHHhh
Q 014165 388 ------GKEPNKGV-NPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 388 ------~~~v~~~~-~p~~avA~Ga~l~a~~~ 412 (429)
..++.... +|.+++..|++++|..-
T Consensus 337 ~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 337 LLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhccccceeccCchhhhhcccccceeeeccc
Confidence 23455555 89999999999999764
No 44
>PTZ00466 actin-like protein; Provisional
Probab=99.60 E-value=3.8e-14 Score=137.25 Aligned_cols=301 Identities=15% Similarity=0.141 Sum_probs=187.3
Q ss_pred cEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCC----------cEEEcHhHHHhhhhCCCceecchhhhc
Q 014165 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKRLI 106 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~----------~~~~G~~A~~~~~~~~~~~i~~~~~~l 106 (429)
..|.||+|+..++++++.++.|.++ +||++...+. ..++|+++..... .
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~--~----------- 71 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRG--L----------- 71 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhCc--C-----------
Confidence 4689999999999999988877654 3666654322 3345655522110 0
Q ss_pred CCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHH
Q 014165 107 GRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDA 186 (429)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~ 186 (429)
..+...+++|....| +.+..+++++.+... .......++++-|..++..
T Consensus 72 --------------------------~~l~~Pi~~G~v~dw---d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~ 120 (380)
T PTZ00466 72 --------------------------LKVTYPINHGIIENW---NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQK 120 (380)
T ss_pred --------------------------ceeCccccCCeECCH---HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHH
Confidence 000011124444444 344455555543211 2223456889999999999
Q ss_pred HHHHHHH-HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 014165 187 QRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (429)
Q Consensus 187 ~r~~l~~-a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~i 265 (429)
+|+.+.+ ..+..+++.+.+..++.+++++++. .+-+|||+|.+.|.++-+..+ . .+.......++||.++
T Consensus 121 ~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tglVVD~G~~~t~v~PV~~G--~-~~~~~~~~~~~GG~~l 191 (380)
T PTZ00466 121 NKEKIAEVFFETFNVPALFISIQAILSLYSCGK------TNGTVLDCGDGVCHCVSIYEG--Y-SITNTITRTDVAGRDI 191 (380)
T ss_pred HHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------ceEEEEeCCCCceEEEEEECC--E-EeecceeEecCchhHH
Confidence 9999866 4667899999999999999988743 356999999999999755522 1 1222333478999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc-------------eEEEEEecccCCcceeeeecHH
Q 014165 266 DQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-------------QVRVEIESLFDGIDFSEPLTRA 332 (429)
Q Consensus 266 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~-------------~~~~~i~~~~~~~~~~~~i~~~ 332 (429)
++.|.+.+.. + +..... ..-...++.+|+.+.-.. ..... -.+.+|.. +.+..+
T Consensus 192 t~~L~~lL~~----~-~~~~~~-----~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~-y~LPdg~~--i~l~~e 258 (380)
T PTZ00466 192 TTYLGYLLRK----N-GHLFNT-----SAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLP-YILPDGSQ--ILIGSE 258 (380)
T ss_pred HHHHHHHHHh----c-CCCCCc-----HHHHHHHHHHHHhCeEecCChHHHHhhcccccccee-EECCCCcE--EEEchH
Confidence 9999888732 1 111111 011244566666642110 00001 11234433 445555
Q ss_pred HH---HHHhHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC-----C--CCCCCCC
Q 014165 333 RF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD-----G--KEPNKGV 395 (429)
Q Consensus 333 ~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~-----~--~~v~~~~ 395 (429)
.+ |-+|+|.+ ..|.+.|.+.+.++..+ ..-...|+|+||+|.+|++.+.|++.+. . .++....
T Consensus 259 r~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~ 338 (380)
T PTZ00466 259 RYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPP 338 (380)
T ss_pred HhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCC
Confidence 44 34445532 25677888888877543 3345889999999999999999988872 1 2344555
Q ss_pred CchhHHHhHHHHHHHh
Q 014165 396 NPDEAVAYGAAVQGGI 411 (429)
Q Consensus 396 ~p~~avA~Ga~l~a~~ 411 (429)
++.+++..|+.++|..
T Consensus 339 ~r~~~aW~GgSilasl 354 (380)
T PTZ00466 339 ERKFSTFIGGSILASL 354 (380)
T ss_pred CCceeEEECchhhcCc
Confidence 7788999999999864
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.60 E-value=1.1e-14 Score=139.53 Aligned_cols=179 Identities=20% Similarity=0.268 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhc-----cCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCC
Q 014165 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLD-----KKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 259 (429)
Q Consensus 185 ~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~-----~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~ 259 (429)
.+..+...++++.+|++...+--++.|.+-.+... .......++++|+|+.+|.+++++-+...+ .+...
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEe
Confidence 36677788899999999988878888876555332 111456799999999999999988544443 55689
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhH
Q 014165 260 LGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNN 339 (429)
Q Consensus 260 ~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~ 339 (429)
+||.++++.+.+.+.-.+ .++|+.|...+. ..+...++++
T Consensus 210 ~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l---------------------~~~~~~~~l~ 249 (340)
T PF11104_consen 210 IGGNDLTEAIARELGIDF-------------------EEAEELKRSGGL---------------------PEEYDQDALR 249 (340)
T ss_dssp -SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT---------------------------HHHHHH
T ss_pred eCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCC---------------------CcchHHHHHH
Confidence 999999999987652111 677777765321 1133467778
Q ss_pred HHHHHHHHHHHHHHHHc--CCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCC---------CCC----------Cch
Q 014165 340 DLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN---------KGV----------NPD 398 (429)
Q Consensus 340 ~~~~~i~~~i~~~l~~~--~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~---------~~~----------~p~ 398 (429)
+.++++.+.|++.++-+ ......++.|+|+||+|++++|.+.|++.+ +.++. ... .|.
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 88888888888888743 223557999999999999999999999999 33222 222 367
Q ss_pred hHHHhHHHHHH
Q 014165 399 EAVAYGAAVQG 409 (429)
Q Consensus 399 ~avA~Ga~l~a 409 (429)
+++|.|+|+++
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 89999999975
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.56 E-value=4.3e-14 Score=133.74 Aligned_cols=176 Identities=18% Similarity=0.281 Sum_probs=101.7
Q ss_pred CceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHH
Q 014165 200 LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK 279 (429)
Q Consensus 200 ~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~ 279 (429)
+..+.+++|+.||++.+..... ....++|||+||+|||++++.-+ ........+....|-..+.+.+.+.+..
T Consensus 140 I~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~~~--~~~~~~~~~~~~~Gvs~~~~~I~~~l~~---- 212 (318)
T PF06406_consen 140 IKDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVRGG--LPDISKCSGTPEIGVSDLYDAIAQALRS---- 212 (318)
T ss_dssp EEEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEEGG--G--EEEEEEETTSSTHHHHHHHHHHTT-----
T ss_pred EeeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeecCC--ccccchhccCCchhHHHHHHHHHHHHHH----
Confidence 4568889999999998865533 45679999999999999988621 1111122334578999988888777632
Q ss_pred HhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q 014165 280 KHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLE 359 (429)
Q Consensus 280 ~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 359 (429)
.+...+. ..++++-....... .+.......+ ..+++.++++..++++.+.+.+.+.+
T Consensus 213 -~~~~~s~---------~~~~~ii~~~~~~~----~~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~---- 269 (318)
T PF06406_consen 213 -AGIDTSE---------LQIDDIIRNRKDKG----YLRQVINDED-----VIDDVSEVIEEAVEELINRILRELGD---- 269 (318)
T ss_dssp --SBHHHH---------HHHHHHHHTTT-HH----HHHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred -hcCCCcH---------HHHHHHHHhhhccc----eecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 1111100 11111111000000 0000000000 23344555555555555555555543
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCCchhHHHhHHHH
Q 014165 360 KNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 360 ~~~~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~~~p~~avA~Ga~l 407 (429)
...++.|+++||+|. .+.+.|++.++ ..++....||++|.|+|...
T Consensus 270 ~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~~ 317 (318)
T PF06406_consen 270 FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFYK 317 (318)
T ss_dssp S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHHH
T ss_pred hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHhc
Confidence 235788999999987 99999999985 45688888999999999764
No 47
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=3.7e-12 Score=115.11 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCC-----CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCC
Q 014165 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-----GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 260 (429)
Q Consensus 186 ~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-----~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~ 260 (429)
+..+....+++.||+....+--|..|..-+|...-.. .-.+++++|+|+..|.++++.-+...| .+..++
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~ 223 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPV 223 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccC
Confidence 4466678899999999988988999987777422211 223368999999999999998766554 556899
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHH
Q 014165 261 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 340 (429)
Q Consensus 261 Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~ 340 (429)
|+..+++.+.+. |+.+. .+++.+|+....-. +.-.+++.|
T Consensus 224 g~~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~ 263 (354)
T COG4972 224 GTDQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRP 263 (354)
T ss_pred cHHHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHH
Confidence 999999999554 34443 67778887544322 223678899
Q ss_pred HHHHHHHHHHHHHHHcC--CCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCC-------------------CCCCCCchh
Q 014165 341 LFRKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE-------------------PNKGVNPDE 399 (429)
Q Consensus 341 ~~~~i~~~i~~~l~~~~--~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~-------------------v~~~~~p~~ 399 (429)
+++++.+.|++.|+-+- .....+++|+|+||++.+.+|.+++.++++ .+ -...+.|.+
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~-~~t~vanPf~~~~~~~~v~k~~l~~dap~l 342 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS-IPTEVANPFAYMALNVKVNKGYLQTDAPAL 342 (354)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC-CCeEeeCHHHHHhhhhccccccccccchHH
Confidence 99999999999998653 234568999999999999999999999983 22 122335677
Q ss_pred HHHhHHHHHH
Q 014165 400 AVAYGAAVQG 409 (429)
Q Consensus 400 avA~Ga~l~a 409 (429)
.+|.|+++++
T Consensus 343 ~ia~GLAlRg 352 (354)
T COG4972 343 TIALGLALRG 352 (354)
T ss_pred HHHhhhhhhc
Confidence 8888888875
No 48
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.44 E-value=8.5e-12 Score=114.33 Aligned_cols=317 Identities=15% Similarity=0.125 Sum_probs=181.6
Q ss_pred CCcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEe----C-----CcEEEcHhHHHhhhhCCCceecchhhh
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT----D-----SERLIGEAAKNQAAVNPDRTIFDVKRL 105 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~----~-----~~~~~G~~A~~~~~~~~~~~i~~~~~~ 105 (429)
.-..|.||.|+..++++|+..+-|..+ +||++... . +..+++..|...
T Consensus 10 Ev~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~--------------- 66 (426)
T KOG0679|consen 10 EVSALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV--------------- 66 (426)
T ss_pred ccceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhccC---------------
Confidence 345789999999999999998877655 38776641 1 133555444211
Q ss_pred cCCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCH
Q 014165 106 IGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND 185 (429)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~ 185 (429)
.-...++. ..+++|...+| +++...++|.++.-. ........+.+|.|..-+.
T Consensus 67 ---pr~gmEv~--------------------~~i~nGlv~dW---D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~ 119 (426)
T KOG0679|consen 67 ---PRPGMEVK--------------------TPIKNGLVEDW---DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTR 119 (426)
T ss_pred ---CCCCCeec--------------------cchhcCCcccH---HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcH
Confidence 11111111 11236666666 444455555553211 1222334689999977778
Q ss_pred HHHHHHHH-HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHH
Q 014165 186 AQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (429)
Q Consensus 186 ~~r~~l~~-a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~ 264 (429)
+.|+.+.+ +++...++...++.+|.|+|++.+. .+.+|||+|+++|.++-+..+ ..-..+... ..+||+.
T Consensus 120 ~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr------stalVvDiGa~~~svsPV~DG--~Vlqk~vvk-s~laGdF 190 (426)
T KOG0679|consen 120 ANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR------STALVVDIGATHTSVSPVHDG--YVLQKGVVK-SPLAGDF 190 (426)
T ss_pred HHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC------CceEEEEecCCCceeeeeecc--eEeeeeeEe-cccchHH
Confidence 88888766 5777899999999999999998843 456999999999999866632 222222233 6899999
Q ss_pred HHHHHHHHHHHH---------HHHHhCCC------------CcccHHH--HHHHHHHHHHHHHHccCCceEEEEE-----
Q 014165 265 FDQRVMEYFIKL---------IKKKHGKD------------ISKDKRA--IGKLRREAERAKRALSSQHQVRVEI----- 316 (429)
Q Consensus 265 id~~l~~~l~~~---------~~~~~~~~------------~~~~~~~--~~~L~~~~e~~K~~l~~~~~~~~~i----- 316 (429)
++..+.+.+..+ +.++.... +++-... ......-.++.|+++.....+.++-
T Consensus 191 l~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~ 270 (426)
T KOG0679|consen 191 LNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQ 270 (426)
T ss_pred HHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccc
Confidence 999999988754 11111000 0010111 1122334556666654333222211
Q ss_pred -----ecccCCcceeeeecHHHH-HHHhHHHH-----------------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcC
Q 014165 317 -----ESLFDGIDFSEPLTRARF-EELNNDLF-----------------RKTMGPVKKAMEDAGLE--KNQIDEIVLVGG 371 (429)
Q Consensus 317 -----~~~~~~~~~~~~i~~~~~-~~~~~~~~-----------------~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG 371 (429)
..+.+|....+...|-++ +..|+|-. -.+.+++...+..++.+ ......|+++||
T Consensus 271 i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGG 350 (426)
T KOG0679|consen 271 IPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGG 350 (426)
T ss_pred CCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecC
Confidence 112233322222222111 23333311 12334444455444332 334578999999
Q ss_pred CCCcHHHHHHHHhhc----CCCCCCC-----CCCchhHHHhHHHHHHH
Q 014165 372 STRIPKVQQLLKDYF----DGKEPNK-----GVNPDEAVAYGAAVQGG 410 (429)
Q Consensus 372 ~s~~~~l~~~l~~~~----~~~~v~~-----~~~p~~avA~Ga~l~a~ 410 (429)
.|.++++.+.|.+.+ |+.++.. ..+-.+++..|+.++|-
T Consensus 351 tSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILAS 398 (426)
T KOG0679|consen 351 TSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILAS 398 (426)
T ss_pred cchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhc
Confidence 999999999988876 3332211 12446788889888873
No 49
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.36 E-value=2.5e-11 Score=118.40 Aligned_cols=183 Identities=16% Similarity=0.145 Sum_probs=121.7
Q ss_pred EEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEe-----------CCcEEEcHhHHHhhhhCCCceecchhhhc
Q 014165 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-----------DSERLIGEAAKNQAAVNPDRTIFDVKRLI 106 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~-----------~~~~~~G~~A~~~~~~~~~~~i~~~~~~l 106 (429)
.|.||.||..++++++.++.|..+. |+++.-. .+...+|+++......
T Consensus 8 ~iVIDnGS~~~k~Gfag~~~P~~V~--------ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~------------- 66 (444)
T COG5277 8 TIVIDNGSGTTKAGFAGNDTPTTVF--------PSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN------------- 66 (444)
T ss_pred eEEEeCCCceEEeeecCCCCceeec--------ccccccccccccccccccccccccCchhhhccCC-------------
Confidence 3999999999999999998876664 4444332 1234455555322211
Q ss_pred CCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHH-HHHcCCcccceEEccCCCCCH
Q 014165 107 GRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETA-EAFLGKKIKDAVVTVPAYFND 185 (429)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~itvP~~~~~ 185 (429)
..+.+...+.+|....|+..+ .+.++++..- ..........+++|.|..+..
T Consensus 67 ------------------------~~~~~~~p~~~g~i~~W~~~e---~~w~~~~~~~~~~~~~~~~~pllltep~~n~~ 119 (444)
T COG5277 67 ------------------------SLLELRYPIENGIILNWDAME---QIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPP 119 (444)
T ss_pred ------------------------ccceeecccccCccCCcHHHH---HHHHHhhcchhhccCCCcCCceEEeccCCCcH
Confidence 012222233366666775443 4444444432 111122335799999999999
Q ss_pred HHHHHHHH-HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHH
Q 014165 186 AQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (429)
Q Consensus 186 ~~r~~l~~-a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~ 264 (429)
+.|+.+.+ +++...++.+.+..++.+++++.+... .+.+|+|+|.+.|+++=+-.+-.. ........+||.+
T Consensus 120 ~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~DG~~l---~~a~~ri~~gG~~ 192 (444)
T COG5277 120 SNREKITELLFETLNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVDGIVL---PKAVKRIDIGGRD 192 (444)
T ss_pred HHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeeccccc---cccceeeecCcHH
Confidence 99988766 577788999999999999998876553 357999999999999755543221 1233347899999
Q ss_pred HHHHHHHHHHH
Q 014165 265 FDQRVMEYFIK 275 (429)
Q Consensus 265 id~~l~~~l~~ 275 (429)
++..+.+.+..
T Consensus 193 it~~l~~lL~~ 203 (444)
T COG5277 193 ITDYLKKLLRE 203 (444)
T ss_pred HHHHHHHHHhh
Confidence 99999988865
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.30 E-value=1.8e-10 Score=105.31 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=113.2
Q ss_pred eeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Q 014165 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (429)
Q Consensus 204 ~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~ 283 (429)
..++|..|.+.+....... . -.|+|+||..+.+..++ ++........+.+..|+..+.+.+++.+ +.
T Consensus 73 ~~~~ei~~~~~g~~~~~~~-~--~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l--------~~ 139 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE-A--RGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL--------GV 139 (248)
T ss_pred CceEEhhHHHHHHHHHCCC-C--CEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc--------CC
Confidence 3677888877666444332 1 25999999999998888 4444555567778889999888887765 32
Q ss_pred CCcccHHHHHHHHHHHHHHHHHccCC----ceEEEEEe-cccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q 014165 284 DISKDKRAIGKLRREAERAKRALSSQ----HQVRVEIE-SLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGL 358 (429)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~l~~~----~~~~~~i~-~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~ 358 (429)
++ ++++.++.+-... ....+..+ ...... .-..+ .+++++.+++.+...+.+.+...+
T Consensus 140 ~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~---~~di~~~~~~~va~~i~~~~~~~~- 202 (248)
T TIGR00241 140 SV-----------EELGSLAEKADRKAKISSMCTVFAESELISLL--AAGVK---KEDILAGVYESIAERVAEMLQRLK- 202 (248)
T ss_pred CH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCCCC---HHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 22 4445544432111 11111111 000000 00112 356777777777777777766543
Q ss_pred CcCCCC-eEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHH
Q 014165 359 EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (429)
Q Consensus 359 ~~~~~~-~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~ 408 (429)
++ .|+++||.++++++.+.+++.+ +.++..+.+|+.+.|.|||++
T Consensus 203 ----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 ----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred ----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 44 6999999999999999999999 889999999999999999973
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.14 E-value=1.6e-09 Score=98.91 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=105.4
Q ss_pred eeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Q 014165 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (429)
Q Consensus 204 ~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~ 283 (429)
..++|..|.+.+..+...+ ..-.|+|+||..+.+..+.- ++..........+.-|.-.|=+..++.| +.
T Consensus 106 ~~v~EItaha~Ga~~~~pp--~v~tIIDIGGQDsK~I~~d~-~G~v~dF~MNdkCAAGTGrFLE~~A~~L--------gi 174 (293)
T TIGR03192 106 KAITEIACHARGANYMGGN--AVRTILDMGGQDCKAIHCDE-KGKVTNFLMNDKCAAGTGRGMEVISDLM--------QI 174 (293)
T ss_pred cceeeHHHHHHHHHHhcCC--CCCEEEEeCCCceEEEEEcC-CCcEeeeeecCcccccccHHHHHHHHHc--------CC
Confidence 4589998888777544321 22489999999998865532 3344455566666666665555555544 33
Q ss_pred CCcccHHHHHHHHHHHHHHH-HHccCCceEEEEEe----c-ccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 014165 284 DISKDKRAIGKLRREAERAK-RALSSQHQVRVEIE----S-LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAG 357 (429)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K-~~l~~~~~~~~~i~----~-~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 357 (429)
++.+ +. +.+.+.+ +...-.....+.-+ . ...| .++ ++++..+.+.+...+...+++.+
T Consensus 175 ~lee----l~---~~a~~~~~~p~~Iss~CtVFAeSevi~l~~~G------~~~---edI~aGl~~sia~rv~~~~~~~~ 238 (293)
T TIGR03192 175 PIAD----LG---PRSFDVETEPEAVSSICVVFAKSEALGLLKAG------YTK---NMVIAAYCQAMAERVVSLLERIG 238 (293)
T ss_pred CHHH----HH---HHHHhcCCCCCCcCCcceEeccHhHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHhcccC
Confidence 3211 11 1111111 11111111222111 0 1112 233 44556666666666666665543
Q ss_pred CCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCC-CCCCchhHHHhHHHHHHHh
Q 014165 358 LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN-KGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 358 ~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~-~~~~p~~avA~Ga~l~a~~ 411 (429)
. -..|+++||.++.+.+.+.+++.+ +.++. .+.+|+..-|.|||++|..
T Consensus 239 i----~~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 239 V----EEGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred C----CCCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 2 235899999999999999999999 67766 5778999999999999965
No 52
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.03 E-value=1.7e-08 Score=95.77 Aligned_cols=195 Identities=18% Similarity=0.175 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchH
Q 014165 184 NDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (429)
Q Consensus 184 ~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~ 263 (429)
+.+.|..+... .+.+ ..++|-.|.+.+..+.....++.-.|+|+||..+.+..+ .++...-......+.-|+-
T Consensus 205 TGyGR~~i~~~---~~ad--~iv~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l--~~G~v~dF~MNdkCAAGTG 277 (404)
T TIGR03286 205 TGYGRFTIGEH---FGAD--LIQEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISV--WDGIPDNFTMGGICAGASG 277 (404)
T ss_pred eeecHHHHhhh---cCCC--ceEEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEE--cCCceeeEEEcCcccccCc
Confidence 44555555322 2222 347888888776655443333456899999987776444 4555555556666665555
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH-HHccCCceEEEEEe-cccCCcceeeeecHHHHHHHhHHH
Q 014165 264 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAK-RALSSQHQVRVEIE-SLFDGIDFSEPLTRARFEELNNDL 341 (429)
Q Consensus 264 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K-~~l~~~~~~~~~i~-~~~~~~~~~~~i~~~~~~~~~~~~ 341 (429)
.+=+.+++.| +.++. .+-+.+.+.+ +...-.....+.-+ .... -.....++ ++++..+
T Consensus 278 rFLE~~A~~L--------gi~ie-------El~~lA~~~~~~pv~IsS~CtVFaeSevIs--ll~~G~~~---eDIaAGl 337 (404)
T TIGR03286 278 RFLEMTAKRL--------GVDIT-------ELGKLALKGMPEKVRMNSYCIVFGIQDLVT--ALAEGASP---EDVAAAA 337 (404)
T ss_pred HHHHHHHHHh--------CCCHH-------HHHHHHHhCCCCCCCccCcccccccHhHHH--HHHCCCCH---HHHHHHH
Confidence 5555555544 22221 1112222221 11111111111000 0000 00011233 4455555
Q ss_pred HHHHHHHHHH-HHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHH
Q 014165 342 FRKTMGPVKK-AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (429)
Q Consensus 342 ~~~i~~~i~~-~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~ 410 (429)
...+.+.+.. .+++.+. -+.|+++||.++++.+.+.+++.+ +.++..+.+|+++-|.||+++|.
T Consensus 338 ~~SIa~rv~~~l~~~~~i----~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 338 CHSVAEQVYEQQLQEIDV----REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHhhcCCC----CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 6666666553 3444332 234999999999999999999999 78899999999999999999985
No 53
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=99.01 E-value=4.9e-09 Score=98.85 Aligned_cols=299 Identities=17% Similarity=0.185 Sum_probs=167.3
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEE----------eCCcEEEcHhHHHhhhhCCCceecchhhh
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAF----------TDSERLIGEAAKNQAAVNPDRTIFDVKRL 105 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~----------~~~~~~~G~~A~~~~~~~~~~~i~~~~~~ 105 (429)
...|-||.|+..++++++.+..|..+ +||++.. ..+..+.|++|.... .++.
T Consensus 7 ~~~vViDnGsg~~KaGfag~~~P~~v--------~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---------~l~~- 68 (372)
T KOG0676|consen 7 IQAVVIDNGSGFVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---------TLKY- 68 (372)
T ss_pred cceEEEECCCceeecccCCCCCCcee--------cceeccccccccccccccccccccchhhhccc---------cccC-
Confidence 36799999999999999876655433 3665532 122334466653332 0010
Q ss_pred cCCCCCCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCH
Q 014165 106 IGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND 185 (429)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~ 185 (429)
.++.|...+|+ ++ ..+..|+...-... .+....+++|-|..|..
T Consensus 69 --------------------------------Pie~Giv~~wd--~m-e~iw~~if~~~L~~-~Pee~pvllte~pl~p~ 112 (372)
T KOG0676|consen 69 --------------------------------PIERGIVTDWD--DM-EKIWHHLFYSELLV-APEEHPVLLTEPPLNPK 112 (372)
T ss_pred --------------------------------ccccccccchH--HH-HHHHHHHHHHhhcc-CcccCceEeecCCCCch
Confidence 11123323332 22 66666666322222 22335799999999999
Q ss_pred HHHHHHHHH-HHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHH
Q 014165 186 AQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (429)
Q Consensus 186 ~~r~~l~~a-~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~ 264 (429)
..||.|.+. ++..+.+.+.+ .. .|.+++++.. +-+|+|+|.|.|++.=+.. .+...+......+||.+
T Consensus 113 ~nREk~tqi~FE~fnvpa~yv-a~-qavlya~g~t------tG~VvD~G~gvt~~vPI~e---G~~lp~ai~~ldl~G~d 181 (372)
T KOG0676|consen 113 ANREKLTQIMFETFNVPALYV-AI-QAVLYASGRT------TGLVVDSGDGVTHVVPIYE---GYALPHAILRLDLAGRD 181 (372)
T ss_pred HhHHHHHHHhhhhcCccHhHH-HH-HHHHHHcCCe------eEEEEEcCCCceeeeeccc---ccccchhhheecccchh
Confidence 999999875 55567776555 22 4434334333 3599999999987753332 12233345557899999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCc---e---------EEEEE-ecccCCcceeeeecH
Q 014165 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH---Q---------VRVEI-ESLFDGIDFSEPLTR 331 (429)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~---~---------~~~~i-~~~~~~~~~~~~i~~ 331 (429)
++..+...|.+ ..+...-... ++-++.+|+.+.-.. + ..... ..+.+|.. +.+..
T Consensus 182 lt~~l~~~L~~---~g~s~~~~~~-------~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~ 249 (372)
T KOG0676|consen 182 LTDYLLKQLRK---RGYSFTTSAE-------FEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGN 249 (372)
T ss_pred hHHHHHHHHHh---cccccccccH-------HHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE--EecCC
Confidence 99977776643 1111111111 133445555542110 0 00000 01223332 44443
Q ss_pred HHH---HHHhHHH-----HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC-------CCCCCCC
Q 014165 332 ARF---EELNNDL-----FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD-------GKEPNKG 394 (429)
Q Consensus 332 ~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~-------~~~v~~~ 394 (429)
+.+ +-.++|. ...|.+.+-..+-++..+ +.....|+|+||++-.|+|.+.+.+.+. ..++..+
T Consensus 250 erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~p 329 (372)
T KOG0676|consen 250 ERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAP 329 (372)
T ss_pred cccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecC
Confidence 332 2223332 244556666666665443 4446789999999999999998888662 1234444
Q ss_pred CCchhHHHhHHHHHHHh
Q 014165 395 VNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 395 ~~p~~avA~Ga~l~a~~ 411 (429)
.+..+++..|+.+.|..
T Consensus 330 p~r~~s~WlGgSIlasl 346 (372)
T KOG0676|consen 330 PERKYSAWLGGSILASL 346 (372)
T ss_pred cccccceecCceeEeec
Confidence 44457888888887754
No 54
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=99.01 E-value=9e-08 Score=99.41 Aligned_cols=281 Identities=19% Similarity=0.292 Sum_probs=164.6
Q ss_pred EecCCCcceEEE-EEe---CCceeeeCHHHHHHHHHHHHHHHHHHHcCC--------------cccceEEccCCCCCHHH
Q 014165 126 IVNRDGKPYIQV-QIR---DGETKVFSPEEISAMILTKMKETAEAFLGK--------------KIKDAVVTVPAYFNDAQ 187 (429)
Q Consensus 126 ~~~~~g~~~~~~-~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------------~~~~~~itvP~~~~~~~ 187 (429)
.++++|.+.... ... ..-...++..-+...+|..|+.+|.-+.+. ...++++|+|+..+..+
T Consensus 392 liN~~G~~L~~l~~~~~r~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~E 471 (1002)
T PF07520_consen 392 LINDDGQPLYQLDPEDERLPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPE 471 (1002)
T ss_pred hhcccCcchhhhcCccccCccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHH
Confidence 346777765543 110 112334578889999999999888666532 23569999999999999
Q ss_pred HHHHHHHHHHc--------CCc--------------------eeee-ccchhHHHHHhhhcc------------------
Q 014165 188 RQATKDAGIIA--------GLN--------------------VARI-INEPTAAAIAYGLDK------------------ 220 (429)
Q Consensus 188 r~~l~~a~~~a--------g~~--------------------~~~~-v~E~~Aaa~~~~~~~------------------ 220 (429)
|+.+++.++.| |.. .+.+ -+|+.|.-+-|.++.
T Consensus 472 r~ifr~r~~~Ai~LvWk~lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~r 551 (1002)
T PF07520_consen 472 REIFRRRMEEAIGLVWKALGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMAR 551 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcC
Confidence 99888877764 321 1111 345655544442221
Q ss_pred C----------CCccEEEEEEeCCCceEEEEEEEe----CC-eEEEE---EecCCCCCchHHHHHHHHH-HHHHHHHHH-
Q 014165 221 K----------GGEKNILVFDLGGGTFDVSILTID----NG-VFEVL---STNGDTHLGGEDFDQRVME-YFIKLIKKK- 280 (429)
Q Consensus 221 ~----------~~~~~~lvvDiG~~ttd~~v~~~~----~~-~~~~~---~~~~~~~~Gg~~id~~l~~-~l~~~~~~~- 280 (429)
. .+.-.++-|||||||||+.+-++. .+ ...+. --..+..+.|++|=..+++ ++...+++.
T Consensus 552 p~~~~~~~~~~~~slriASIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL 631 (1002)
T PF07520_consen 552 PDRQPAPGEDPGPSLRIASIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQAL 631 (1002)
T ss_pred CCccccccCCCCCceEEEEEecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHH
Confidence 0 024468999999999999888875 22 11111 1233456788887766655 444333222
Q ss_pred ---------------hCCCCcc--cHHHHH------------HHHHHHHHHHHHccCCceEEEEEecc------------
Q 014165 281 ---------------HGKDISK--DKRAIG------------KLRREAERAKRALSSQHQVRVEIESL------------ 319 (429)
Q Consensus 281 ---------------~~~~~~~--~~~~~~------------~L~~~~e~~K~~l~~~~~~~~~i~~~------------ 319 (429)
+|.+-.. +....+ ++..++|..-. +.........+..+
T Consensus 632 ~~aG~~~~~~ll~~LfG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~-~~~~~~~~~~f~ell~~~~Pt~~vl~ 710 (1002)
T PF07520_consen 632 KKAGVADPRALLSRLFGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDP-LDPSAEIDATFGELLEREPPTAAVLD 710 (1002)
T ss_pred HHhcccCHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCccccccHHHhcCCcCCcHHHHH
Confidence 2222000 000000 11122222110 00000001111000
Q ss_pred ---------------cCCcceeeeecHHHHHHHhH---HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHH
Q 014165 320 ---------------FDGIDFSEPLTRARFEELNN---DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQL 381 (429)
Q Consensus 320 ---------------~~~~~~~~~i~~~~~~~~~~---~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~ 381 (429)
++=.++.+.|...++...+. -.+......+-+++..++. +.++|+|-=|++|+|++.
T Consensus 711 yi~~~~~~~~~~~~~Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~C-----DVLLLTGRPSrlPgvqal 785 (1002)
T PF07520_consen 711 YINEEVRRLPAGAPDFDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYDC-----DVLLLTGRPSRLPGVQAL 785 (1002)
T ss_pred HHHHHHhhcCCCCCCcceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC-----CEEEEcCCccccHHHHHH
Confidence 11124557788889988775 6777777777778887653 469999999999999999
Q ss_pred HHhhcCC--------------------CCCCCCCCchhHHHhHHHHHHHhhc
Q 014165 382 LKDYFDG--------------------KEPNKGVNPDEAVAYGAAVQGGILS 413 (429)
Q Consensus 382 l~~~~~~--------------------~~v~~~~~p~~avA~Ga~l~a~~~~ 413 (429)
+++..|- ..- +..||...+|.||.+..--..
T Consensus 786 fr~~~pvPp~RIv~l~~Y~tg~WYPF~~~~-rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 786 FRHLLPVPPDRIVPLHGYRTGNWYPFNDQG-RIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred HHHhCCCCcccEEecCCeeecccccCCCCC-cCCCchHHHHHHHHHHHHhcc
Confidence 9999851 112 445999999999988775443
No 55
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.92 E-value=5.9e-07 Score=81.13 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=102.5
Q ss_pred eccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCC
Q 014165 205 IINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKD 284 (429)
Q Consensus 205 ~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~ 284 (429)
.++|..|.+.+..+... +.-.|+|+||.-+.+..+.. ++...-......+.-|.-.|=+.+++.| +.+
T Consensus 80 ~vtEIt~ha~GA~~~~p---~~~tIiDIGGQD~K~I~~~~-~G~v~~f~MNdkCAAGTG~FLe~~A~~L--------~i~ 147 (262)
T TIGR02261 80 HFYSMTTHARGAIYLNP---EARAVLDIGALHGRAIRMDE-RGKVEAYKMTSQCASGSGQFLENIARYL--------GIA 147 (262)
T ss_pred CeeEEeHHHHHHHHHCC---CCCEEEEeCCCceEEEEEcC-CCcEeeEEecCcccccccHHHHHHHHHh--------CCC
Confidence 45788888877754433 22389999999998754432 3444555556666666665555555544 332
Q ss_pred CcccHHHHHHHHHHHHHHHHHccCCceEEEEEe----c-ccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q 014165 285 ISKDKRAIGKLRREAERAKRALSSQHQVRVEIE----S-LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLE 359 (429)
Q Consensus 285 ~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~----~-~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 359 (429)
+.+ |-+.+.+.++...-.....+.-+ . ...| .++ ++++..+.+.+...+...+++.+..
T Consensus 148 lee-------l~~~a~~~~~~~~iss~CtVFaeSevi~~~~~G------~~~---edI~aGl~~sia~r~~~~~~~~~~~ 211 (262)
T TIGR02261 148 QDE-------IGSLSQQADNPEKVSGICAVLAETDVINMVSRG------ISA---PNILKGIHESMADRLAKLLKSLGAL 211 (262)
T ss_pred HHH-------HHHHHhcCCCCCCcCCCceEEchhhHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 211 11222222222211122222111 0 1111 233 4555666666677666666654321
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHhhcCCCC----CCCCCCchhHHHhHHHHHH
Q 014165 360 KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE----PNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 360 ~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~----v~~~~~p~~avA~Ga~l~a 409 (429)
-..|+++||.++.+++.+.+++.+++.+ +..+.+|+..-|+|||++|
T Consensus 212 ---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 ---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred ---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 2359999999999999999999885333 6667799999999999975
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.92 E-value=3.6e-07 Score=84.78 Aligned_cols=195 Identities=22% Similarity=0.212 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchH
Q 014165 184 NDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (429)
Q Consensus 184 ~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~ 263 (429)
+.+.|+.+..+. ..-..+.|-.|.+.++.+-.++.+ .|+|+||.-+.+..++ ++...-+....-+.-|.-
T Consensus 196 TGYGR~~v~~~~-----~aD~~~~Ei~ah~kgA~~f~p~~d---tIiDIGGQD~K~i~i~--dG~v~df~mN~~CAAGtG 265 (396)
T COG1924 196 TGYGRNLVGAAL-----GADKVVVEISAHAKGARYFAPDVD---TVIDIGGQDSKVIKLE--DGKVDDFTMNDKCAAGTG 265 (396)
T ss_pred ecccHHHhhhhh-----cCCcceeeeehhHHHHHHhCCCCc---EEEEecCcceeEEEEe--CCeeeeeEeccccccccc
Confidence 455666666443 223457787787777655554333 8999999988886665 555555555555555655
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHH
Q 014165 264 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFR 343 (429)
Q Consensus 264 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~ 343 (429)
.+=+.+++.| +.++.+ +-+.+++.+....-.....+....-. ++..=.-...++++.-+..
T Consensus 266 rFLE~~A~~L--------gv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSev----i~~~~~G~~~EdI~AGl~~ 326 (396)
T COG1924 266 RFLEVIARRL--------GVDVEE-------LGKLALKATPPVKINSRCAVFAESEV----ISALAEGASPEDILAGLAY 326 (396)
T ss_pred hHHHHHHHHh--------CCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHH----HHHHHcCCCHHHHHHHHHH
Confidence 5555555544 333221 11222232221111112222111000 0000001123666677777
Q ss_pred HHHHHHHH-HHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhh
Q 014165 344 KTMGPVKK-AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 344 ~i~~~i~~-~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~ 412 (429)
++...+.. ++++.+... .|+++||.+....+..++++.+ +.+|.++.+|+..-|+|||+++...
T Consensus 327 Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 327 SVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred HHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 77777665 666544321 2999999999999999999999 8999999999999999999998753
No 57
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.88 E-value=7.5e-08 Score=84.18 Aligned_cols=313 Identities=18% Similarity=0.187 Sum_probs=181.6
Q ss_pred CCcEEEEecCCceEEEEEEECCeEEEEe-cCCCCcccceEEEEe---CCcEEEcHhHHHhhhhCCCceecchhhhcCCCC
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIA-NDQGNRITPSWVAFT---DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKF 110 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~~~~~i~-~~~g~~~~Ps~i~~~---~~~~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~ 110 (429)
++.+|..|-||.+.+.+++..+-|..+. .-.|++.+.+.-... =+....|++|.+- +.++.-.
T Consensus 3 ~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeasel------------Rs~L~i~- 69 (389)
T KOG0677|consen 3 SRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASEL------------RSLLDIN- 69 (389)
T ss_pred CCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHH------------HHHHhcC-
Confidence 5788999999999999999888664442 111221111100000 0134556655332 2222111
Q ss_pred CCHHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHH-HH--cCCcccceEEccCCCCCHHH
Q 014165 111 EDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAE-AF--LGKKIKDAVVTVPAYFNDAQ 187 (429)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~--~~~~~~~~~itvP~~~~~~~ 187 (429)
....||..++|+-. +++++++- +. .+.....+.+|-|.--....
T Consensus 70 --------------------------YPmeNGivrnwddM-------~h~WDytF~ekl~idp~~~KiLLTePPmNP~kN 116 (389)
T KOG0677|consen 70 --------------------------YPMENGIVRNWDDM-------EHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKN 116 (389)
T ss_pred --------------------------CccccccccChHHH-------HHHHHhhhhhhccCCCccCeEEeeCCCCCcccc
Confidence 11126777777543 23333331 11 22344579999998888888
Q ss_pred HHHHHH-HHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHH
Q 014165 188 RQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (429)
Q Consensus 188 r~~l~~-a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id 266 (429)
|+.|-+ ..+..||..+.+--.+.-..++-++... +|+|-|-|.|.++-+..+ +...+-.+...+.|.+++
T Consensus 117 REKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG------vVvDSGDGVTHi~PVye~---~~l~HLtrRldvAGRdiT 187 (389)
T KOG0677|consen 117 REKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG------VVVDSGDGVTHIVPVYEG---FVLPHLTRRLDVAGRDIT 187 (389)
T ss_pred HHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce------EEEecCCCeeEEeeeecc---eehhhhhhhccccchhHH
Confidence 888766 5788899988877666666666555555 899999999999744321 112222445789999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCC-----------ceEEEEEe--cccCCcceeeeecHHH
Q 014165 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIE--SLFDGIDFSEPLTRAR 333 (429)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~-----------~~~~~~i~--~~~~~~~~~~~i~~~~ 333 (429)
.-+..++. ++.|..+.+.+. +.++++|+.+.-. .++.+-++ .+.+|.- +.+..+.
T Consensus 188 ryLi~LLl---~rGYafN~tADF-------ETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRv--IkvG~ER 255 (389)
T KOG0677|consen 188 RYLIKLLL---RRGYAFNHTADF-------ETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRV--IKVGGER 255 (389)
T ss_pred HHHHHHHH---hhccccccccch-------HHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcE--EEeccee
Confidence 99988874 344443333222 4455566655210 11122111 1233332 2223333
Q ss_pred H---HHHhHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcC----------------
Q 014165 334 F---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD---------------- 387 (429)
Q Consensus 334 ~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~---------------- 387 (429)
| +.+|.|.+ ..+.+++-..++.++++ .....+|+|+||++--|++.+.|++.++
T Consensus 256 FeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~ 335 (389)
T KOG0677|consen 256 FEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLK 335 (389)
T ss_pred ccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhh
Confidence 3 35555543 34666777777777654 3446899999999999999888877652
Q ss_pred CCCCCC--CCCchhHHHhHHHHHHHhhcC
Q 014165 388 GKEPNK--GVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 388 ~~~v~~--~~~p~~avA~Ga~l~a~~~~~ 414 (429)
..+++. +..-..-|-.|.+.+|.++..
T Consensus 336 KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 336 KFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred heEEeccCCCccceeEEEchHHHHHHhcC
Confidence 112333 322245677777777777654
No 58
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.88 E-value=1.9e-07 Score=87.72 Aligned_cols=180 Identities=15% Similarity=0.140 Sum_probs=107.3
Q ss_pred eeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Q 014165 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (429)
Q Consensus 204 ~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~ 283 (429)
.+++|..|.+.+..+... +.-.|+|+||..+.+..+.- ++...-...+..+.-|.-.|=+.+++.| +.
T Consensus 249 ~vitEItcHA~GA~~l~P---~vrTIIDIGGQDsK~I~ld~-~G~V~dF~MNDKCAAGTGrFLE~mA~~L--------gi 316 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP---GTRTVLDIGGQDTKGIQIDD-HGIVENFQMNDRCAAGCGRYLGYIADEM--------NM 316 (432)
T ss_pred ceeeeHHHHHHHHHHHCC---CCCEEEEeCCCceEEEEEcC-CCcEeeeeecCcccccchHHHHHHHHHc--------CC
Confidence 456899998887755543 23489999999998754433 2344445556666666666555555544 33
Q ss_pred CCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCC
Q 014165 284 DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQI 363 (429)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 363 (429)
++.+ +-..+.+.++...-.....+.-+.-.- .-+.-.+++ ++++..+.+.+...+...+.+.. ..-
T Consensus 317 ~leE-------l~~lA~~a~~pv~ISS~CtVFAESEVI-slla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~i~ 382 (432)
T TIGR02259 317 GLHE-------LGPLAMKSSKPARINSTCTVFAGAELR-DRLALGDKR---EDILAGLHRAIILRAISIISRSG---GIT 382 (432)
T ss_pred CHHH-------HHHHHhcCCCCCCcCCcceEEehHHHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---CCC
Confidence 3211 112222222222222222222110000 000011233 45556666777777666666542 112
Q ss_pred CeEEEEcCCCCcHHHHHHHHhhcC----CCCCCCCCCchhHHHhHHHHHH
Q 014165 364 DEIVLVGGSTRIPKVQQLLKDYFD----GKEPNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 364 ~~V~l~GG~s~~~~l~~~l~~~~~----~~~v~~~~~p~~avA~Ga~l~a 409 (429)
..|+++||.++.+++.+.|++.+. +.++.++.+|+++-|.|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 459999999999999999999994 4678889999999999999975
No 59
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.83 E-value=6.4e-08 Score=85.81 Aligned_cols=192 Identities=20% Similarity=0.191 Sum_probs=114.3
Q ss_pred HHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 014165 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (429)
Q Consensus 195 ~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 274 (429)
-+..|.+...--.|+++|...+..++. .+...+|+|+|+|+||.+++...+... .+ +..-.|+.++-.+...
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~v~-~i----HlAGAG~mVTmlI~sE-- 176 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGEVT-AI----HLAGAGNMVTMLINSE-- 176 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS-EE-EE----EEE-SHHHHHHHHHHH--
T ss_pred HHHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCcEE-EE----EecCCchhhHHHHHHh--
Confidence 345588877778899999999955444 677899999999999999998655442 22 2333567776666433
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHcc-----------CCceEEEEEe----cc-------cCC--cceeeeec
Q 014165 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALS-----------SQHQVRVEIE----SL-------FDG--IDFSEPLT 330 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~-----------~~~~~~~~i~----~~-------~~~--~~~~~~i~ 330 (429)
++.+.. ..+|.+|+--- .+....+.-. .. .++ .+++..++
T Consensus 177 ------LGl~d~----------~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~ 240 (332)
T PF08841_consen 177 ------LGLEDR----------ELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLS 240 (332)
T ss_dssp ------CT-S-H----------HHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-
T ss_pred ------hCCCCH----------HHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCcc
Confidence 233221 67778887521 0011111000 00 011 12233355
Q ss_pred HHHHHHHhHHHHHHH-HHHHHHHHHHcCCC--cCCCCeEEEEcCCCCcHHHHHHHHhhcCC-------CCCCCCCCchhH
Q 014165 331 RARFEELNNDLFRKT-MGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEA 400 (429)
Q Consensus 331 ~~~~~~~~~~~~~~i-~~~i~~~l~~~~~~--~~~~~~V~l~GG~s~~~~l~~~l~~~~~~-------~~v~~~~~p~~a 400 (429)
-+.+..+-+..-+++ .....++|++.... ..+++.|+|+||++.-.-+.+++.+.+.. .+|+-..-|.+|
T Consensus 241 lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNA 320 (332)
T PF08841_consen 241 LEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNA 320 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHH
Confidence 556655555544443 34456667665433 45688999999999999999999998853 367777799999
Q ss_pred HHhHHHHHHH
Q 014165 401 VAYGAAVQGG 410 (429)
Q Consensus 401 vA~Ga~l~a~ 410 (429)
||.|+++.-+
T Consensus 321 VATGLvlsy~ 330 (332)
T PF08841_consen 321 VATGLVLSYA 330 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999998654
No 60
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.81 E-value=5.2e-08 Score=93.79 Aligned_cols=83 Identities=17% Similarity=0.323 Sum_probs=58.9
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHH------------cCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEE
Q 014165 174 DAVVTVPAYFNDAQRQATKDAGII------------AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSI 241 (429)
Q Consensus 174 ~~~itvP~~~~~~~r~~l~~a~~~------------ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v 241 (429)
-.++|-++. .+++++++++. ||+....++. +.|++.+.. +. ++...+++||+|||||++++
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL-se-Eke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL-SE-ERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh-hh-hccCceEEEEeCCCceEEEE
Confidence 356776653 44556666665 5555444544 888887775 33 57888999999999999999
Q ss_pred EEEeCCeEEEEEecCCCCCchHHHHHH
Q 014165 242 LTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (429)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~Gg~~id~~ 268 (429)
|+.+... .....++||++++..
T Consensus 163 f~~G~l~-----~T~~l~vGG~~IT~D 184 (475)
T PRK10719 163 FDAGKVI-----DTACLNVGGRLIETD 184 (475)
T ss_pred EECCEEE-----EEEEEecccceEEEC
Confidence 9966544 355688999987544
No 61
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=98.81 E-value=7.3e-08 Score=91.81 Aligned_cols=121 Identities=18% Similarity=0.145 Sum_probs=85.8
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHcCCc-----ccceEEccCCCCCHHHHHHH-HHHHHHcCCceeeeccchhHHHHHhhh
Q 014165 145 KVFSPEEISAMILTKMKETAEAFLGKK-----IKDAVVTVPAYFNDAQRQAT-KDAGIIAGLNVARIINEPTAAAIAYGL 218 (429)
Q Consensus 145 ~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~itvP~~~~~~~r~~l-~~a~~~ag~~~~~~v~E~~Aaa~~~~~ 218 (429)
...+..++.+++-+-+.....+.+..+ .-.+++-||..|...+.+.+ +-.+...||..+.++.|+.|+.++.+.
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 444566666655443333333333322 23579999999998776654 556788899999999999999998877
Q ss_pred ccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 014165 219 DKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (429)
Q Consensus 219 ~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 274 (429)
+. ..|||+|+.+|.++.++.+-... - ..-...+||.+|++.|+.++.
T Consensus 275 ss------~CVVdiGAQkTsIaCVEdGvs~~--n-tri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 275 SS------ACVVDIGAQKTSIACVEDGVSLP--N-TRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred cc------eeEEEccCcceeEEEeecCcccc--C-ceEEeccCCchHHHHHHHHHH
Confidence 73 49999999999998888653211 0 122367999999999988764
No 62
>PRK13317 pantothenate kinase; Provisional
Probab=98.46 E-value=4.3e-05 Score=70.55 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=42.8
Q ss_pred CCeEEEEc-CCCCcHHHHHHHHhhcC--CCCCCCCCCchhHHHhHHHHHHH
Q 014165 363 IDEIVLVG-GSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAVQGG 410 (429)
Q Consensus 363 ~~~V~l~G-G~s~~~~l~~~l~~~~~--~~~v~~~~~p~~avA~Ga~l~a~ 410 (429)
+..|+++| |.++.|.+++.+.+.+. +.++..+.+|++..|.||++++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 56799999 79999999999999874 57788899999999999999875
No 63
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=98.30 E-value=2.5e-05 Score=70.78 Aligned_cols=185 Identities=13% Similarity=0.100 Sum_probs=103.8
Q ss_pred CcEEEEecCCceEEEEEEECCeEEEEecCCCCcccceEEEEeCCc---EEEcHhHHHhhhhCCCceecchhhhcCCCCCC
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSE---RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~~~i~~~~g~~~~Ps~i~~~~~~---~~~G~~A~~~~~~~~~~~i~~~~~~l~~~~~~ 112 (429)
...|-+|=|..++++++..+..+.++ |+++.-.+.+ .+.|++..+- ++
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~~v---------pNcl~kaK~~~rr~f~~nei~ec------------~D-------- 53 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPFVV---------PNCLAKAKFGRRRSFLANEIDEC------------KD-------- 53 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCceec---------cchhhhcccccchhhhhhhhhhc------------cC--------
Confidence 46799999999999999999888666 6666543321 2234432110 00
Q ss_pred HHHHHhcccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHH-
Q 014165 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT- 191 (429)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l- 191 (429)
.. ...+...++.|.-..|+.+. ...+++...-.-.......++++|-|..--++-.+..
T Consensus 54 ------~s-----------sL~y~rp~erGyLvnW~tq~---~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~ 113 (400)
T KOG0680|consen 54 ------IS-----------SLFYRRPHERGYLVNWDTQS---QVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTD 113 (400)
T ss_pred ------cc-----------ceEEeehhhcceeEeehhHH---HHHHHHhcCCCcCcccCcceEEEecccccccchhhhHH
Confidence 00 11122223355555665544 2223322211101112345789999965555544444
Q ss_pred HHHHHHcCCceeeeccchhHHHHHhh---hccCC----CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHH
Q 014165 192 KDAGIIAGLNVARIINEPTAAAIAYG---LDKKG----GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (429)
Q Consensus 192 ~~a~~~ag~~~~~~v~E~~Aaa~~~~---~~~~~----~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~ 264 (429)
+-..+..++..+.-. +.|+..++. .+..+ ...+.+|||.|.+-|.+.-+-.+....+- ...+.+||..
T Consensus 114 eilFEey~fd~v~kt--taa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qa---V~RiDvGGK~ 188 (400)
T KOG0680|consen 114 EILFEEYQFDAVLKT--TAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQA---VKRIDVGGKA 188 (400)
T ss_pred HHHHHHhccceEeec--CHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhc---eEEeecchHH
Confidence 445667777764433 333333332 22221 35689999999999999655543332222 2237899999
Q ss_pred HHHHHHHHHH
Q 014165 265 FDQRVMEYFI 274 (429)
Q Consensus 265 id~~l~~~l~ 274 (429)
++..|.+.+.
T Consensus 189 LTn~LKE~iS 198 (400)
T KOG0680|consen 189 LTNLLKETIS 198 (400)
T ss_pred HHHHHHHHhh
Confidence 9999988774
No 64
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=98.21 E-value=0.00017 Score=71.54 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=57.8
Q ss_pred eeeeecHHHHHHHhHHH---HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCC----------C--
Q 014165 325 FSEPLTRARFEELNNDL---FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG----------K-- 389 (429)
Q Consensus 325 ~~~~i~~~~~~~~~~~~---~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~----------~-- 389 (429)
+.+.|...++++.+-.- +...+..+-+++..+. -+.++|+|.-+++|+++..++...|- .
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y~-----cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINHYD-----CDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhhhc-----ccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 44556777777666544 5556666666666553 35689999999999999999998741 0
Q ss_pred -------CCCCCCCchhHHHhHHHHHHHh
Q 014165 390 -------EPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 390 -------~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
+--+..||....|.||.+.+--
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Ls 846 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALS 846 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHH
Confidence 1223349999999999887754
No 65
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=98.04 E-value=0.0011 Score=61.65 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=54.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhh----cCCCCCCCCCCchhHHHhHHHHHH
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY----FDGKEPNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~----~~~~~v~~~~~p~~avA~Ga~l~a 409 (429)
.++++...+++.+.+...+.+...... .|+++||..+...+.+.+++. ++..++..+.+|....|.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 567777778888888888877643321 199999999997777666444 345566777799999999999986
No 66
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.91 E-value=7.6e-05 Score=72.34 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=56.3
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHcCCcee---eeccchhHHHHHhhhc--cCCCccEEEEEEeCCCceEEEEEEEeCCe
Q 014165 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA---RIINEPTAAAIAYGLD--KKGGEKNILVFDLGGGTFDVSILTIDNGV 248 (429)
Q Consensus 174 ~~~itvP~~~~~~~r~~l~~a~~~ag~~~~---~~v~E~~Aaa~~~~~~--~~~~~~~~lvvDiG~~ttd~~v~~~~~~~ 248 (429)
-++||==+.-.+++++.+...+..||==.+ .---|+.-|+.+.+.. ..+....++=+|+|||||.+++++.+...
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~ 166 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVI 166 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEE
Confidence 356776666677888888888877762111 1133555554433221 12256789999999999999999965433
Q ss_pred EEEEEecCCCCCchHHH
Q 014165 249 FEVLSTNGDTHLGGEDF 265 (429)
Q Consensus 249 ~~~~~~~~~~~~Gg~~i 265 (429)
...+..+||+.|
T Consensus 167 -----~T~cl~IGGRLi 178 (473)
T PF06277_consen 167 -----DTACLDIGGRLI 178 (473)
T ss_pred -----EEEEEeeccEEE
Confidence 345577888754
No 67
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.80 E-value=0.0027 Score=58.37 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=39.9
Q ss_pred CCCCeEEEEcC-CCCcHHHHHHHHhhcC--CCCCCCCCCchhHHHhHHHH
Q 014165 361 NQIDEIVLVGG-STRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 361 ~~~~~V~l~GG-~s~~~~l~~~l~~~~~--~~~v~~~~~p~~avA~Ga~l 407 (429)
.....|+++|| ....|.+++.+...+. +.++..+.|+.+..|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34678999999 8889999999988763 46788888999999999986
No 68
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=97.39 E-value=0.0015 Score=63.66 Aligned_cols=121 Identities=10% Similarity=-0.048 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHH-HHHcCCceeeeccchhHHHHHhhhccCC-Ccc
Q 014165 148 SPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKG-GEK 225 (429)
Q Consensus 148 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a-~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~ 225 (429)
+.-++...+|.|+..+..-.-..-...+++|-+..-....|..|.+. ++..|++.|.+=-.+.=+.+ .+... ...
T Consensus 92 tNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~---hN~~~~~~~ 168 (645)
T KOG0681|consen 92 TNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFY---HNYGKSSNK 168 (645)
T ss_pred ccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHh---hccCcccCc
Confidence 33455566666666543221111134589999988888888888775 66679988777443333322 22221 334
Q ss_pred EEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 014165 226 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (429)
Q Consensus 226 ~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 274 (429)
..+||++|..+|.+..+..+...+ ....-+++||.....-|.+++.
T Consensus 169 ~~liis~g~~~T~vipvldG~~il---~~~kRiN~GG~qa~dYL~~Lmq 214 (645)
T KOG0681|consen 169 SGLIISMGHSATHVIPVLDGRLIL---KDVKRINWGGYQAGDYLSRLMQ 214 (645)
T ss_pred ceEEEecCCCcceeEEEecCchhh---hcceeeccCcchHHHHHHHHHh
Confidence 689999999999997777554322 2344588999888777766655
No 69
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=97.27 E-value=0.0063 Score=55.74 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=62.9
Q ss_pred ccceEEccCCCCCHHHHHHHHHHH-HHcCCceeee-ccchhHHHHHhhhccCC-CccEEEEEEeCCCceEEEEEEEeCCe
Q 014165 172 IKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARI-INEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGV 248 (429)
Q Consensus 172 ~~~~~itvP~~~~~~~r~~l~~a~-~~ag~~~~~~-v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~~v~~~~~~~ 248 (429)
.....+|.|..-.++.|+...++. +....+-+.+ +..-.|.+..+...... +.-.-+|+|-|-|-|.+..+.. .
T Consensus 106 dh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaE---g 182 (415)
T KOG0678|consen 106 DHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAE---G 182 (415)
T ss_pred cceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeec---c
Confidence 345789999888899998877753 2333332222 22223333333222221 3455689999999999865552 3
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHH
Q 014165 249 FEVLSTNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 249 ~~~~~~~~~~~~Gg~~id~~l~~~l 273 (429)
+.+.+.-.++++.|.+++.-+.+++
T Consensus 183 yVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 183 YVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred eEEeeeeccccccCCchhHHHHHHh
Confidence 4455566778999999988887766
No 70
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.029 Score=56.05 Aligned_cols=76 Identities=20% Similarity=0.128 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCceeeeccchhHHHHHh--hhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 014165 188 RQATKDAGIIAGLNVARIINEPTAAAIAY--GLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (429)
Q Consensus 188 r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~--~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~i 265 (429)
.+.+..+-+..|++.-.+--|-+|-..+. ..... .....+++|+|||+|.++.....+.. ...+.++|...+
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~-~~~~~lv~DIGGGStEl~~g~~~~~~-----~~~Sl~~G~v~l 164 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP-RKGDGLVIDIGGGSTELVLGDNFEIG-----LLISLPLGCVRL 164 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC-CCCCEEEEEecCCeEEEEEecCCccc-----eeEEeecceEEe
Confidence 44577777778988644444444443333 33333 26778999999999999988744332 122345555554
Q ss_pred HHHH
Q 014165 266 DQRV 269 (429)
Q Consensus 266 d~~l 269 (429)
++.+
T Consensus 165 t~~~ 168 (492)
T COG0248 165 TERF 168 (492)
T ss_pred ehhh
Confidence 4443
No 71
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.22 E-value=0.0035 Score=61.59 Aligned_cols=191 Identities=15% Similarity=0.080 Sum_probs=108.7
Q ss_pred EEEEEEeCCCceEEEEEEEeC-------CeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCC---Cc----ccHHH
Q 014165 226 NILVFDLGGGTFDVSILTIDN-------GVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKD---IS----KDKRA 291 (429)
Q Consensus 226 ~~lvvDiG~~ttd~~v~~~~~-------~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~---~~----~~~~~ 291 (429)
+-|+.=+|.+|+++..-+... .....+....-..-||+.-.-.+.+++.+....-.... .. .....
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~ 348 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESL 348 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHH
Confidence 345666888888887665431 12222222222345888888888888865421111100 01 11123
Q ss_pred HHHHHHHHHHHHHHccCCceEEEEEecccC------Cc-------ceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q 014165 292 IGKLRREAERAKRALSSQHQVRVEIESLFD------GI-------DFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGL 358 (429)
Q Consensus 292 ~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~------~~-------~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~ 358 (429)
...+..-.++.+........ -..++.+.. +. .....-+.+.+-.++.-.+.-+.--.+..++...-
T Consensus 349 ~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~ 427 (544)
T COG1069 349 AQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED 427 (544)
T ss_pred HHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444422211 111111111 00 11222345555566666666555444444443322
Q ss_pred CcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCCC
Q 014165 359 EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDE 419 (429)
Q Consensus 359 ~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~~ 419 (429)
.+-.++.|+++||..+.|.+.+...... +.++..+ ..+.+++.|+++.++-=++-+.+.
T Consensus 428 ~g~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag~~~dl 486 (544)
T COG1069 428 QGIAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAGVHPDL 486 (544)
T ss_pred cCCeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhccCcch
Confidence 4456899999999999999999999999 7787777 668899999999998877666654
No 72
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.09 E-value=0.00069 Score=59.65 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=54.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCC-cCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHh
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~-~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
.++++-+++.+.-.++..++..... ...++.|+++||+++++.+.+.+.+.+ +.+|.+..+ .++.|.|+++.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 3444444454444444444433111 244889999999999999999999999 788877744 88999999999874
No 73
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=97.00 E-value=0.067 Score=54.10 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCceeeeccchhHHHHHh-hhccCC-CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 014165 188 RQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (429)
Q Consensus 188 r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~-~~~~~~-~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~i 265 (429)
.+.+.++-...|++. .+++..+-|.+.| +..... ..+..+++|+|||+|++++++-+... ...+.++|.-.+
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vrl 167 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT-----SLFSLSMGCVTW 167 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee-----eeeEEeccchHH
Confidence 445666666779985 5666555444444 222211 23458999999999999988754333 244588999887
Q ss_pred HHHH
Q 014165 266 DQRV 269 (429)
Q Consensus 266 d~~l 269 (429)
.+.+
T Consensus 168 ~e~f 171 (496)
T PRK11031 168 LERY 171 (496)
T ss_pred HHHh
Confidence 6665
No 74
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.93 E-value=0.001 Score=53.47 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=28.9
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCc--------hHHHH--HHHHHHHH
Q 014165 227 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG--------GEDFD--QRVMEYFI 274 (429)
Q Consensus 227 ~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~G--------g~~id--~~l~~~l~ 274 (429)
++++|+|++++.+.+++.+.... .....+| +..|+ +.+.+.+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~-----~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGY-----IRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEE-----EEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCc-----EEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 57899999999999999743332 2224566 88888 77777663
No 75
>PRK15027 xylulokinase; Provisional
Probab=96.82 E-value=0.0039 Score=63.03 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 338 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 338 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
++.+++.+.-.++..++.....+..++.|+++||+++++...+++.+.+ +.+|....+.+.+.|.||+++|+.-.+..+
T Consensus 362 ~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~ 440 (484)
T PRK15027 362 ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANPEK 440 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcCCcC
Confidence 3344444444433333332112234788999999999999999999999 888866556666789999999998887666
Q ss_pred C
Q 014165 418 D 418 (429)
Q Consensus 418 ~ 418 (429)
+
T Consensus 441 ~ 441 (484)
T PRK15027 441 S 441 (484)
T ss_pred C
Confidence 5
No 76
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.81 E-value=0.0053 Score=62.93 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=66.2
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHH
Q 014165 330 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a 409 (429)
++.++..+++.+++.+.=.++..++.....+..++.|.++||+++++.+.+.+.+.+ +.+|.+..++ ++.++||+++|
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA 488 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAMLG 488 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHHHH
Confidence 455666677777777766666666554222335788999999999999999999999 8999888554 57799999999
Q ss_pred HhhcCCCCC
Q 014165 410 GILSGEGGD 418 (429)
Q Consensus 410 ~~~~~~~~~ 418 (429)
+.-.+..++
T Consensus 489 ~~~~G~~~~ 497 (541)
T TIGR01315 489 AKAAGTTES 497 (541)
T ss_pred HHhcCccCC
Confidence 887776553
No 77
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.01 Score=58.72 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=63.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCc-CCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhc
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEK-NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~-~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~ 413 (429)
+.+....++.|.-..+..|+...... .+++.+.+.||.|+.+.|.+.+.+.+ +.++..+.+.+. ++.||+++|+.-+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 34444555666655555555544333 57888999999999999999999999 799999977777 9999999999988
Q ss_pred CCCC
Q 014165 414 GEGG 417 (429)
Q Consensus 414 ~~~~ 417 (429)
++.+
T Consensus 464 ~~~~ 467 (516)
T KOG2517|consen 464 GKWS 467 (516)
T ss_pred CCcc
Confidence 8744
No 78
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=96.55 E-value=0.034 Score=52.39 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCceeeeccchhHHHHHh-hhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHH
Q 014165 190 ATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (429)
Q Consensus 190 ~l~~a~~~ag~~~~~~v~E~~Aaa~~~-~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~ 268 (429)
.+.++-...|++. .+++..+-|.+.| +..........+++|+|||+|.++.++-+... ...+.++|...+.+.
T Consensus 90 ~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 90 FLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLGCVRLTEQ 163 (300)
T ss_pred HHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccceEEhHHh
Confidence 3444555678875 6777666665555 22222122235999999999999988743322 344578888887776
Q ss_pred H
Q 014165 269 V 269 (429)
Q Consensus 269 l 269 (429)
+
T Consensus 164 f 164 (300)
T TIGR03706 164 F 164 (300)
T ss_pred h
Confidence 5
No 79
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.51 E-value=0.011 Score=54.45 Aligned_cols=72 Identities=22% Similarity=0.180 Sum_probs=42.6
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHcCCce---eeeccchhHHHHHhhhc--cCCCccEEEEEEeCCCceEEEEEEEe
Q 014165 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNV---ARIINEPTAAAIAYGLD--KKGGEKNILVFDLGGGTFDVSILTID 245 (429)
Q Consensus 174 ~~~itvP~~~~~~~r~~l~~a~~~ag~~~---~~~v~E~~Aaa~~~~~~--~~~~~~~~lvvDiG~~ttd~~v~~~~ 245 (429)
.+++|=-+.-+..++..+......+|==. ..---|+.-|.-..+.. ...+...++=+|+|||||.++++..+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~G 165 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAG 165 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeeccc
Confidence 35666666666677777665555554211 11123444443333222 22256678899999999999999875
No 80
>PRK10854 exopolyphosphatase; Provisional
Probab=96.49 E-value=0.041 Score=55.90 Aligned_cols=76 Identities=21% Similarity=0.318 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCceeeeccchhHHHHHh-hhccCC-CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHH
Q 014165 188 RQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (429)
Q Consensus 188 r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~-~~~~~~-~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~i 265 (429)
.+.+.++-...|++. .+++..+-|.+.| +..... .....+++|+|||+|++++++.+.... ..+.++|...+
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~-----~~S~~lG~vrl 172 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL-----VESRRMGCVSF 172 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE-----eEEEecceeeH
Confidence 344556666679885 6666555554444 222221 234689999999999999988543322 22357888777
Q ss_pred HHHH
Q 014165 266 DQRV 269 (429)
Q Consensus 266 d~~l 269 (429)
.+.+
T Consensus 173 ~e~f 176 (513)
T PRK10854 173 AQLY 176 (513)
T ss_pred Hhhh
Confidence 6654
No 81
>PLN02669 xylulokinase
Probab=96.45 E-value=0.012 Score=60.47 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHh
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
.++.+++.+.=.++..++..+. ..+++.|+++||+|+++.+.+.+.+.| +.+|.+...+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~-~~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGM-PVPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 3455555555555555555432 245789999999999999999999999 7888887665 6779999999976
No 82
>PRK04123 ribulokinase; Provisional
Probab=96.42 E-value=0.0099 Score=61.10 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-CCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~-s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++.+++.+.=.++..++.....+..++.|.++||+ ++++.+.+.+.+.+ +.+|.+.. +.++.|.|++++|+.-.+.
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~~~G~ 490 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVVA-SDQCPALGAAIFAAVAAGA 490 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEecC-ccccchHHHHHHHHHHhcc
Confidence 344455554444444444332122347889999999 99999999999999 88887664 4567899999999987765
Q ss_pred CC
Q 014165 416 GG 417 (429)
Q Consensus 416 ~~ 417 (429)
.+
T Consensus 491 ~~ 492 (548)
T PRK04123 491 YP 492 (548)
T ss_pred CC
Confidence 54
No 83
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.38 E-value=0.013 Score=59.15 Aligned_cols=81 Identities=23% Similarity=0.328 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCC-CcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcC
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~ 414 (429)
.+++.+++.+.-.++..++.... .+..++.|.++||+++++.+.+.+.+.+ +.+|.... ..++.|.||+++|+.-.+
T Consensus 363 ~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcC
Confidence 33344444444444443333211 1234788999999999999999999999 88888774 556889999999998877
Q ss_pred CCCC
Q 014165 415 EGGD 418 (429)
Q Consensus 415 ~~~~ 418 (429)
..++
T Consensus 441 ~~~~ 444 (481)
T TIGR01312 441 EKDL 444 (481)
T ss_pred CCCC
Confidence 6553
No 84
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.37 E-value=0.013 Score=59.52 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=56.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHcC-CCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcC
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~ 414 (429)
.+++.+++.|.-.++..++... ..+..++.|.++||+++++.+.+++.+.+ +.+|..... .++.|+||++.|+.-.|
T Consensus 376 ~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 376 HIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERPVV-AETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEecCc-ccchHHHHHHHHhhhcC
Confidence 3444444444444444444332 11234788999999999999999999999 888887644 46789999999988777
Q ss_pred CCC
Q 014165 415 EGG 417 (429)
Q Consensus 415 ~~~ 417 (429)
..+
T Consensus 454 ~~~ 456 (498)
T PRK00047 454 FWK 456 (498)
T ss_pred cCC
Confidence 555
No 85
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.34 E-value=0.013 Score=59.48 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=56.4
Q ss_pred HhHHHHHHHHHHHHHHHHHcCC-CcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~-~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++.+++.+.-.++..++...- .+..++.|.++||+++++.+.+.+.+.+ +.+|.+..+ .++.|.||+++|+.-.+.
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPEM-AETTALGAALLAGLAVGV 457 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecCc-ccchHHHHHHHHHhhcCc
Confidence 3444444444444444433211 1224788999999999999999999999 888887754 457899999999987776
Q ss_pred CCC
Q 014165 416 GGD 418 (429)
Q Consensus 416 ~~~ 418 (429)
.++
T Consensus 458 ~~~ 460 (504)
T PTZ00294 458 WKS 460 (504)
T ss_pred cCC
Confidence 553
No 86
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.32 E-value=0.012 Score=59.70 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHHHHHHcC-CCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~-~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++.+++.+.-.++..++... ..+..++.|.++||+++++.+.+++.+.+ +.+|.+..+ .++.|+||++.|+.-.+.
T Consensus 373 l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~~-~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 373 IARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPKV-TETTALGAAYAAGLAVGY 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEecCC-CcchHHHHHHHHHhhcCc
Confidence 333444444444443433321 11234788999999999999999999999 888887644 467799999999888776
Q ss_pred CCC
Q 014165 416 GGD 418 (429)
Q Consensus 416 ~~~ 418 (429)
.++
T Consensus 451 ~~~ 453 (493)
T TIGR01311 451 WKS 453 (493)
T ss_pred CCC
Confidence 553
No 87
>PF13941 MutL: MutL protein
Probab=96.23 E-value=0.026 Score=55.57 Aligned_cols=48 Identities=31% Similarity=0.566 Sum_probs=31.8
Q ss_pred EEEEecCCceEEEEEEE--CCeEEEEecCCCCcccceEEEEeCCcEEEc-HhHHHhh
Q 014165 38 VIGIDLGTTYSCVGVYK--NGHVEIIANDQGNRITPSWVAFTDSERLIG-EAAKNQA 91 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~--~~~~~~i~~~~g~~~~Ps~i~~~~~~~~~G-~~A~~~~ 91 (429)
++.+|||+|+|++...+ .+..+++ |.-..||.+ .++....| +.|.+..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~~Dv~~G~~~A~~~l 52 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EPGDVTIGLNNALEQL 52 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--CcccHHHHHHHHHHHH
Confidence 68899999999999988 6666666 334557776 22334445 3444443
No 88
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.19 E-value=0.018 Score=59.06 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=55.7
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-CCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~-s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++.+++.+.-.++..++.....+..++.|.++||+ |+++.+.+.+.+.| +.+|.+..++ ++.|.|++++|+.-.+.
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 334444444433333333322122357889999999 99999999999999 8888777554 57799999999987776
Q ss_pred CC
Q 014165 416 GG 417 (429)
Q Consensus 416 ~~ 417 (429)
.+
T Consensus 488 ~~ 489 (536)
T TIGR01234 488 YA 489 (536)
T ss_pred cC
Confidence 54
No 89
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.18 E-value=1.1 Score=41.55 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=90.1
Q ss_pred CCc-eeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEe---cCCCCCchHHHHHHHHHHHH
Q 014165 199 GLN-VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLST---NGDTHLGGEDFDQRVMEYFI 274 (429)
Q Consensus 199 g~~-~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~---~~~~~~Gg~~id~~l~~~l~ 274 (429)
.+. .+.+..+...|..+...... =+|+=.|.|+.-+.. .++......- .=+...+|.++=..+.+...
T Consensus 95 ~~a~~v~v~~Dg~iAl~ga~~~~~-----Gii~i~GTGSi~~~~---~gg~~~r~GG~Gf~IgDegSga~ig~~~L~~~l 166 (301)
T COG2971 95 PFAGKVDVENDGLIALRGALGDDD-----GIIVIAGTGSIGYGR---KGGRRERVGGWGFPIGDEGSGAWIGREALQEAL 166 (301)
T ss_pred CccceEEEecChHHHHhhccCCCC-----CEEEEecCCeEEEEE---eCCeeEEecCcCccccccchHHHHHHHHHHHHH
Confidence 344 67778888777766644444 266668888877654 2222222211 11235688888888877764
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHccCCceEEEEEecccCCcce---eeeecHHHHH------HHhHHHHHHH
Q 014165 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDF---SEPLTRARFE------ELNNDLFRKT 345 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l~~~~~~~~~i~~~~~~~~~---~~~i~~~~~~------~~~~~~~~~i 345 (429)
..+ -+..... .-+++....|..+.+.-+.. ....... --.+.+.-++ .+-..++++.
T Consensus 167 ra~---DG~~~~t---------~L~d~v~~~f~~d~edlv~~--~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~a 232 (301)
T COG2971 167 RAF---DGRREAT---------PLTDAVMAEFNLDPEDLVAF--IYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKEA 232 (301)
T ss_pred HHh---cCCccCC---------hHHHHHHHHhCCCHHHHHHH--HHhcCCchHHHHHhhHHHHHHHHcCCHHHHHHHHHH
Confidence 333 1211111 11222222232211100000 0000000 0001111111 1112233444
Q ss_pred HHHHHHHHHHcCCCcCCCCeEEEEcCCCCc-HHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcC
Q 014165 346 MGPVKKAMEDAGLEKNQIDEIVLVGGSTRI-PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 346 ~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~-~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~ 414 (429)
...+.+.++... .......+.+.||..+. +++.+..++.+.. +|...+..||++.|.....
T Consensus 233 a~~i~~~~~~l~-~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~~~ 294 (301)
T COG2971 233 AAYIATLLEALS-IFNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGRFG 294 (301)
T ss_pred HHHHHHHHHHHh-cccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHhhh
Confidence 444444554432 12335679999998887 8888888887722 2255578888888866443
No 90
>PRK10331 L-fuculokinase; Provisional
Probab=96.16 E-value=0.018 Score=58.01 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=56.3
Q ss_pred HhHHHHHHHHHHHHHHHHHcCC-CcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~-~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++-+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.+ +.+|..... .++.++||+++|+.-.+.
T Consensus 363 l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~~-~e~~a~GaA~la~~~~G~ 440 (470)
T PRK10331 363 FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLDD-AETTVAGAAMFGWYGVGE 440 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecCc-ccchHHHHHHHHHHhcCC
Confidence 3444455544444444443311 1235788999999999999999999999 888877754 457899999999887665
Q ss_pred CC
Q 014165 416 GG 417 (429)
Q Consensus 416 ~~ 417 (429)
.+
T Consensus 441 ~~ 442 (470)
T PRK10331 441 FS 442 (470)
T ss_pred CC
Confidence 55
No 91
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.08 E-value=0.021 Score=57.43 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=57.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCC-CcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcC
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~ 414 (429)
.+++.+++.+.-.++..++...- ...+++.|.++||+++++.+.+.+.+.+ +.+|.+..++ ++.++||+++|+.-.+
T Consensus 366 ~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 366 HIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 34444444444444443333211 1234788999999999999999999999 8888777655 5679999999998777
Q ss_pred CCCC
Q 014165 415 EGGD 418 (429)
Q Consensus 415 ~~~~ 418 (429)
-.++
T Consensus 444 ~~~~ 447 (465)
T TIGR02628 444 EYNS 447 (465)
T ss_pred ccCC
Confidence 6553
No 92
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=96.03 E-value=0.021 Score=58.03 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~ 416 (429)
+++.+.-.+...+....+..+ ..++.|.++||+++++.+.+++.+.+ +.+|.+..++ ++.+.||+++|+.-.+..
T Consensus 379 vlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~G~~ 453 (505)
T TIGR01314 379 ALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKALGLI 453 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhcCcc
Confidence 333444444443443333233 34788999999999999999999999 8888877554 577999999999877755
Q ss_pred CC
Q 014165 417 GD 418 (429)
Q Consensus 417 ~~ 418 (429)
++
T Consensus 454 ~~ 455 (505)
T TIGR01314 454 ED 455 (505)
T ss_pred CC
Confidence 53
No 93
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=96.00 E-value=0.023 Score=56.96 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCC
Q 014165 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGD 418 (429)
Q Consensus 362 ~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~ 418 (429)
.++.|.++||+++++.+.+.+.+.+ +.+|... +.++.|+|+++.|+.-.+..++
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G~~~~ 440 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALDEIND 440 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcCCcCC
Confidence 4788999999999999999999999 8888654 3568899999999988776664
No 94
>PLN02295 glycerol kinase
Probab=95.99 E-value=0.025 Score=57.64 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 362 ~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
+++.|.++||+++++.+.+.+.+.+ +.+|.+.. ..++.|+||++.|+.-.+-.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~A~~~~G~~~ 465 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYAAGLAVGLWT 465 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHHHHhhcCcCC
Confidence 4788999999999999999999999 88887764 456789999999988777554
No 95
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=95.97 E-value=1.5 Score=41.54 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=26.8
Q ss_pred HcCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCc
Q 014165 197 IAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGT 236 (429)
Q Consensus 197 ~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~t 236 (429)
..+++ +.+..+..|++++....... ...+++++.+|.|-
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi 135 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL 135 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc
Confidence 34664 77888998888866443222 34678888888876
No 96
>PRK13318 pantothenate kinase; Reviewed
Probab=95.93 E-value=0.29 Score=44.97 Aligned_cols=20 Identities=35% Similarity=0.840 Sum_probs=17.8
Q ss_pred EEEEecCCceEEEEEEECCe
Q 014165 38 VIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~ 57 (429)
+++||+|.|++++++.+++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 78999999999999998654
No 97
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.80 E-value=0.027 Score=57.46 Aligned_cols=55 Identities=27% Similarity=0.312 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCCC
Q 014165 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGD 418 (429)
Q Consensus 362 ~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~ 418 (429)
.++.|.++||+++++.+.+.+.+.+ +.+|.+..++ ++.++|++++|+.-.+..++
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G~~~~ 463 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAGIYSS 463 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhCCCCC
Confidence 4788999999999999999999999 8888877544 57799999999888776553
No 98
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.64 E-value=0.77 Score=44.93 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=50.2
Q ss_pred CcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhc-CCCCCCCCCCchhH
Q 014165 322 GIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF-DGKEPNKGVNPDEA 400 (429)
Q Consensus 322 ~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~-~~~~v~~~~~p~~a 400 (429)
+..-.+.||..|++++ .-....|..-++-.++++++...++++|++.||+++.=-.++.++=-+ |........--.++
T Consensus 288 ~~~~~i~itq~DIr~~-qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~ 366 (412)
T PF14574_consen 288 DIGDDIYITQKDIREF-QLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNA 366 (412)
T ss_dssp SSSS-EEEEHHHHHHH-HHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-H
T ss_pred CCCCCEEEeHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcH
Confidence 3344688899999876 444455677788889999999999999999999999655556554422 32211111122345
Q ss_pred HHhHHHHHH
Q 014165 401 VAYGAAVQG 409 (429)
Q Consensus 401 vA~Ga~l~a 409 (429)
.-.||.+..
T Consensus 367 al~GA~~~L 375 (412)
T PF14574_consen 367 ALAGARMAL 375 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 556665543
No 99
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=95.62 E-value=0.01 Score=58.05 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCCcC--CCCeEEEEcCCCCcHHHHHHHHhhcC-------CCCCCCCCCchhHHHhHHHHHHHh
Q 014165 344 KTMGPVKKAMEDAGLEKN--QIDEIVLVGGSTRIPKVQQLLKDYFD-------GKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 344 ~i~~~i~~~l~~~~~~~~--~~~~V~l~GG~s~~~~l~~~l~~~~~-------~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
.|.+.+...+.+...... .+.+|+|+||+|.+|++++.|++.+- ...|....||.....+||+-+|+.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 355556666666533322 37899999999999999999999872 457888889999999999999886
No 100
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.49 E-value=0.048 Score=54.86 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHHHHHHHHHcCC-CcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~-~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++-+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.+ +.+|.... .++.+.|+++.|+.-.+.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 3344444444444444333211 1224788999999999999999999999 78886642 368899999999987776
Q ss_pred CCC
Q 014165 416 GGD 418 (429)
Q Consensus 416 ~~~ 418 (429)
.++
T Consensus 426 ~~~ 428 (471)
T PRK10640 426 LNN 428 (471)
T ss_pred cCC
Confidence 553
No 101
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.48 E-value=0.052 Score=52.25 Aligned_cols=57 Identities=25% Similarity=0.400 Sum_probs=48.4
Q ss_pred HHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHH
Q 014165 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (429)
Q Consensus 352 ~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~ 410 (429)
..+..+.+..+.+.|+++||.|+...|-+.|.+.| +++|.+. +-..+.|.|+|++|+
T Consensus 432 ~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~ 488 (545)
T KOG2531|consen 432 RAEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAA 488 (545)
T ss_pred hhccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHH
Confidence 34455666667899999999999999999999999 8888887 667889999999974
No 102
>PRK13321 pantothenate kinase; Reviewed
Probab=95.30 E-value=0.82 Score=41.95 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.3
Q ss_pred cEEEEecCCceEEEEEEECCe
Q 014165 37 TVIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~~ 57 (429)
++++||+|.|+++++++++++
T Consensus 1 MiL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred CEEEEEECCCeEEEEEEECCE
Confidence 368999999999999998663
No 103
>PRK13320 pantothenate kinase; Reviewed
Probab=95.25 E-value=0.66 Score=42.16 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.5
Q ss_pred CcEEEEecCCceEEEEEEECCe
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~ 57 (429)
++.+.||+|+|+++.++++++.
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 3689999999999999999764
No 104
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.62 E-value=0.071 Score=49.90 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHH
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~ 408 (429)
+.+++-..+++.+.|++.....+....+ -.++..||.+ |.+...+.+.++-..+..+..+.-+.|.|+++.
T Consensus 214 ~~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 214 EGIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--EEE-E--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 3444445555566666554443433222 2355567776 488888888883334555556788999999864
No 105
>PRK12408 glucokinase; Provisional
Probab=94.61 E-value=2.9 Score=40.10 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=31.3
Q ss_pred HcCCceeeeccchhHHHHHhhhc---------cCCCc--cEEEEEEeCCCceEEEEEE
Q 014165 197 IAGLNVARIINEPTAAAIAYGLD---------KKGGE--KNILVFDLGGGTFDVSILT 243 (429)
Q Consensus 197 ~ag~~~~~~v~E~~Aaa~~~~~~---------~~~~~--~~~lvvDiG~~ttd~~v~~ 243 (429)
..|++++.+..+..|++++-... ...++ ..++++-+|.|-=--.++.
T Consensus 107 ~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~ 164 (336)
T PRK12408 107 QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLGAALWIP 164 (336)
T ss_pred HcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcceEEEEEc
Confidence 45887799999999999876443 11122 4677777776655554543
No 106
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=2.8 Score=39.54 Aligned_cols=236 Identities=19% Similarity=0.209 Sum_probs=116.1
Q ss_pred eCHHHHHHHHHHHHHHHHHHH---cCC---cccceEEccCCCCCHHHHHHH--HHH-HHHcCCceeeeccchhHHHHHhh
Q 014165 147 FSPEEISAMILTKMKETAEAF---LGK---KIKDAVVTVPAYFNDAQRQAT--KDA-GIIAGLNVARIINEPTAAAIAYG 217 (429)
Q Consensus 147 ~~~~~~~~~~l~~l~~~~~~~---~~~---~~~~~~itvP~~~~~~~r~~l--~~a-~~~ag~~~~~~v~E~~Aaa~~~~ 217 (429)
+-|+....+..+.+....++. .+. .++-+.+|.=......-+--. -++ +...+.+ ..-|.-.++-.+...
T Consensus 41 VvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kP-li~VnH~~gHi~a~~ 119 (342)
T COG0533 41 VVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKP-LIPVNHLEGHIEAAR 119 (342)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCC-EeecchHHHHHHHHH
Confidence 345555555555544433332 232 455566666555554332222 222 2222333 445666666666554
Q ss_pred hccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHH
Q 014165 218 LDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRR 297 (429)
Q Consensus 218 ~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 297 (429)
..... ....+.+=+-||+|.+..++-. +.++++.+.....+ |+.+| ++-+..+...+..+ .+.+
T Consensus 120 l~~~~-~~p~v~LlVSGGHTqli~~~~~-g~y~ilGeTlDdA~-Gea~D---------KvAR~lGL~yPGGp----~Ie~ 183 (342)
T COG0533 120 LETGL-AFPPVALLVSGGHTQLIAVRGI-GRYEVLGETLDDAA-GEAFD---------KVARLLGLGYPGGP----AIEK 183 (342)
T ss_pred hccCC-CCCcEEEEEecCceEEEEEcCC-CcEEEEeeechhhh-hHHHH---------HHHHHhCCCCCCcH----HHHH
Confidence 54442 4556666678888888655532 45777776553333 23333 23444465555433 1222
Q ss_pred HHHHHHHHccCCceEEEEEec-ccCC--cceee------------------eecHHHHHHHhHHHH----HHHHHHHHHH
Q 014165 298 EAERAKRALSSQHQVRVEIES-LFDG--IDFSE------------------PLTRARFEELNNDLF----RKTMGPVKKA 352 (429)
Q Consensus 298 ~~e~~K~~l~~~~~~~~~i~~-~~~~--~~~~~------------------~i~~~~~~~~~~~~~----~~i~~~i~~~ 352 (429)
.+++-... .+.++. ..++ .|++| ....++.++++..+. +.+.+...++
T Consensus 184 lA~~G~~~-------~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rA 256 (342)
T COG0533 184 LAKKGDPD-------AFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERA 256 (342)
T ss_pred HHhcCCCC-------ceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222110 011211 1111 11111 123344444554444 4444555556
Q ss_pred HHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCC------CCchhHHHhHHHHHHHh
Q 014165 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKG------VNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 353 l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~------~~p~~avA~Ga~l~a~~ 411 (429)
++..+ .+.++++||-+....|++++++... +.++..+ +|..+....|+..+...
T Consensus 257 l~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 257 LKHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred HHHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 65544 6679999999999999999988652 2333333 24444445555555543
No 107
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.52 E-value=0.15 Score=51.75 Aligned_cols=53 Identities=26% Similarity=0.326 Sum_probs=41.0
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcC
Q 014165 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~ 414 (429)
.+++.|.++||+|+++...+++.+.+ +.++..+...+.+.+-||++.+....+
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~~~~~~ 452 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAAAALGG 452 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHHHHhCC
Confidence 45778999999999999999999999 888887755555555555555555443
No 108
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=94.51 E-value=2.2 Score=38.75 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHH
Q 014165 331 RARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLK 383 (429)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~ 383 (429)
++..+.+....+......|+..+++....-..-..++++||.++ .+.+.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~--~~~~~~~ 231 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK--LLLDELD 231 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH--hhhhhcc
Confidence 34445555555555555555555543211123457999999977 6666654
No 109
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=94.31 E-value=0.1 Score=50.06 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCC----CCchhHHHhHHHHHHHhh
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG----VNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~----~~p~~avA~Ga~l~a~~~ 412 (429)
++..+.+=..+.|.+.+++.. .+++.|+++||+++.++|.+.|++++++.+|... .+|+.-=|.+.|++|...
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~ 338 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRR 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHH
Confidence 334444444444555555543 2277899999999999999999999987555443 356666677778888654
Q ss_pred cCCC
Q 014165 413 SGEG 416 (429)
Q Consensus 413 ~~~~ 416 (429)
-...
T Consensus 339 ~~g~ 342 (364)
T PF03702_consen 339 LNGL 342 (364)
T ss_dssp HCT-
T ss_pred HcCC
Confidence 4433
No 110
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.29 E-value=0.067 Score=46.58 Aligned_cols=30 Identities=37% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCceeeeccchhHHHHH
Q 014165 186 AQRQATKDAGIIAGLNVARIINEPTAAAIA 215 (429)
Q Consensus 186 ~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~ 215 (429)
...+.+.++++.+|+....++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788999999999999999999998753
No 111
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.99 E-value=0.065 Score=50.08 Aligned_cols=74 Identities=23% Similarity=0.381 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCceeeeccchhHHHHHh-hhccC-CCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 014165 190 ATKDAGIIAGLNVARIINEPTAAAIAY-GLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (429)
Q Consensus 190 ~l~~a~~~ag~~~~~~v~E~~Aaa~~~-~~~~~-~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~ 267 (429)
.+.++-...|++. .+++..+-|.+.| +.... ......+++|+|||+|.++.++-+... ...+.++|.-.+.+
T Consensus 76 ~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vrl~e 149 (285)
T PF02541_consen 76 FLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV-----FSQSLPLGAVRLTE 149 (285)
T ss_dssp HHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE-----EEEEES--HHHHHH
T ss_pred HHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee-----EeeeeehHHHHHHH
Confidence 3555556679885 4555444443333 22111 245678999999999999888743222 24458899998877
Q ss_pred HH
Q 014165 268 RV 269 (429)
Q Consensus 268 ~l 269 (429)
.+
T Consensus 150 ~~ 151 (285)
T PF02541_consen 150 RF 151 (285)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 112
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=93.94 E-value=1.1 Score=42.20 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCC---CCCCCCCCc----hhHHHhHHHHHH
Q 014165 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG---KEPNKGVNP----DEAVAYGAAVQG 409 (429)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~---~~v~~~~~p----~~avA~Ga~l~a 409 (429)
.++..++.+...|...+... .+++.|+|+|..++++-+.+.+++.|.+ .++... .+ ....|+|+|+.|
T Consensus 239 a~ea~~E~i~k~V~~l~~~~----~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l-~~~~~~aKeaA~GaAiIA 313 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLASV----PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKL-EGLARKAKEAAQGAAIIA 313 (343)
T ss_pred HHHHHHHHHHHHHHHHhccc----CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeec-ccccccchhhhhhHHHHh
Confidence 44455555555555454432 3577899999999999998888888842 122221 12 245899999998
Q ss_pred HhhcC
Q 014165 410 GILSG 414 (429)
Q Consensus 410 ~~~~~ 414 (429)
.-+++
T Consensus 314 ~glaG 318 (343)
T PF07318_consen 314 NGLAG 318 (343)
T ss_pred hhhhc
Confidence 66554
No 113
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.65 E-value=0.52 Score=42.19 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHcCCcccceEEccCCCCCH-HHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCC
Q 014165 156 ILTKMKETAEAFLGKKIKDAVVTVPAYFND-AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGG 234 (429)
Q Consensus 156 ~l~~l~~~~~~~~~~~~~~~~itvP~~~~~-~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~ 234 (429)
=.++|++.....++.+ ..++.+--.+.. +.....++.+. ++ +.|...+ -.....++.++||+|+
T Consensus 75 GVe~Ii~~v~~Af~~p--v~~v~~~G~~~ssEa~~~~~~vAA-aN----------W~Ata~~--~~e~~~dsci~VD~GS 139 (330)
T COG1548 75 GVEDIIDTVEKAFNCP--VYVVDVNGNFLSSEALKNPREVAA-AN----------WVATARF--LAEEIKDSCILVDMGS 139 (330)
T ss_pred HHHHHHHHHHHhcCCc--eEEEeccCcCcChhHhcCHHHHHH-hh----------hHHHHHH--HHHhcCCceEEEecCC
Confidence 3456777777766653 255666655554 33332333321 11 1111111 1111455689999999
Q ss_pred CceEEEEEEEe
Q 014165 235 GTFDVSILTID 245 (429)
Q Consensus 235 ~ttd~~v~~~~ 245 (429)
.|||+.-+..+
T Consensus 140 TTtDIIPi~~g 150 (330)
T COG1548 140 TTTDIIPIKDG 150 (330)
T ss_pred cccceEeecch
Confidence 99999766543
No 114
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=93.64 E-value=0.58 Score=44.98 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCC----CCchhHHHhHHHHHHHhhcCCCC
Q 014165 345 TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG----VNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 345 i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~----~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
....|.+.+.... ..++.|+++||+++.++|.++|++.+| .++... .+++.-=|...|++|...-...+
T Consensus 272 TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~l~g~p 344 (365)
T PRK09585 272 TAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRTLRGLP 344 (365)
T ss_pred HHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHHHcCCC
Confidence 3334444444432 224679999999999999999999996 444433 25677777788888865444333
No 115
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=92.55 E-value=7.1 Score=38.02 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.0
Q ss_pred ccCCcEEEEecCCceEEEEEEE
Q 014165 33 TKLGTVIGIDLGTTYSCVGVYK 54 (429)
Q Consensus 33 ~~~~~~iGID~Gt~~t~va~~~ 54 (429)
.+++.++.||+|.|+.+++...
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEE
Confidence 4677899999999999998754
No 116
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=92.41 E-value=7.5 Score=35.30 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.2
Q ss_pred EEEecCCceEEEEEEECCe
Q 014165 39 IGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~~~ 57 (429)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999999875
No 117
>PRK13322 pantothenate kinase; Reviewed
Probab=92.39 E-value=4.8 Score=36.64 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.6
Q ss_pred EEEEecCCceEEEEEEEC
Q 014165 38 VIGIDLGTTYSCVGVYKN 55 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~ 55 (429)
.+-||+|+|+++.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 688999999999999986
No 118
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=92.37 E-value=0.82 Score=41.57 Aligned_cols=49 Identities=29% Similarity=0.269 Sum_probs=38.1
Q ss_pred cCCCCeEEEEcCCCCcHHHHHHHHhhcC---CCCCCCCCCchhHHHhHHHHH
Q 014165 360 KNQIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAVQ 408 (429)
Q Consensus 360 ~~~~~~V~l~GG~s~~~~l~~~l~~~~~---~~~v~~~~~p~~avA~Ga~l~ 408 (429)
+.+++.|+|+||.++...+-+.|.++.. ...+.-..|...|.|.|+...
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRV 345 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRV 345 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHH
Confidence 4679999999999999999999999863 223333446678999998654
No 119
>PRK09698 D-allose kinase; Provisional
Probab=92.19 E-value=10 Score=35.55 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCc-----HHHHHHHHhhcC------CCCCCCCCCchhHHHhHHHH
Q 014165 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI-----PKVQQLLKDYFD------GKEPNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~-----~~l~~~l~~~~~------~~~v~~~~~p~~avA~Ga~l 407 (429)
+...+.+...+...+.-. +++.|+|.|+.+.. +.+++.+++... ..++........+.+.||++
T Consensus 218 ~~~~~~la~~l~~li~~l-----dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~ 292 (302)
T PRK09698 218 QSLLENLARAIATSINLF-----DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAI 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHH
Confidence 334444444444444433 36778888887664 335566655441 12234444456788999998
Q ss_pred HHHh
Q 014165 408 QGGI 411 (429)
Q Consensus 408 ~a~~ 411 (429)
++..
T Consensus 293 ~~~~ 296 (302)
T PRK09698 293 LAHQ 296 (302)
T ss_pred HHHH
Confidence 8653
No 120
>PRK13324 pantothenate kinase; Reviewed
Probab=92.05 E-value=8.2 Score=35.36 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=17.9
Q ss_pred EEEEecCCceEEEEEEECCe
Q 014165 38 VIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~ 57 (429)
++.||+|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998664
No 121
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=92.04 E-value=2.2 Score=40.20 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.1
Q ss_pred cEEEEEEeCCCceEEEEEEEe
Q 014165 225 KNILVFDLGGGTFDVSILTID 245 (429)
Q Consensus 225 ~~~lvvDiG~~ttd~~v~~~~ 245 (429)
.+.+++|+||.|||++++..+
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCEEEEEcCccceeeEEecCC
Confidence 348999999999999998754
No 122
>PRK00292 glk glucokinase; Provisional
Probab=91.70 E-value=12 Score=35.38 Aligned_cols=58 Identities=26% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhc--------cCCC---ccEEEEEEeCCCceEEEEEE
Q 014165 182 YFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLD--------KKGG---EKNILVFDLGGGTFDVSILT 243 (429)
Q Consensus 182 ~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~--------~~~~---~~~~lvvDiG~~ttd~~v~~ 243 (429)
.|... .+.+.+ ..|++++.+..+..|++++.... ...+ ...++++-+|.|-=--.++.
T Consensus 78 ~w~~~-~~~l~~---~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~~ 146 (316)
T PRK00292 78 HWAFS-IAAMKQ---ELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLVP 146 (316)
T ss_pred CcccC-HHHHHH---HhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEEe
Confidence 36542 333443 45887789999999999986431 1112 25688888887766555544
No 123
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=91.19 E-value=0.96 Score=44.40 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=57.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCC-cCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcC
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~-~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~ 414 (429)
.+++..++.|.=..+++++....+ +..++.+-+=||.+++.++.+...+.+ +.+|.++. -.+.-|.||+++|..-.+
T Consensus 375 hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlGaA~lAGla~G 452 (499)
T COG0554 375 HIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHHHHHHHhhhhC
Confidence 344444444444444444433212 225788999999999999999999999 88888874 467889999999988777
Q ss_pred CCC
Q 014165 415 EGG 417 (429)
Q Consensus 415 ~~~ 417 (429)
.-+
T Consensus 453 ~w~ 455 (499)
T COG0554 453 FWK 455 (499)
T ss_pred cCC
Confidence 433
No 124
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=4.7 Score=35.56 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCCchhHHHhHHHH
Q 014165 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~~~p~~avA~Ga~l 407 (429)
.+..+.+.-.+++..++ -+.|+++||-.....||++++.... +..+.-. |..+++-.|+.+
T Consensus 238 vFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faT-DeRfCIDNG~MI 300 (336)
T KOG2708|consen 238 VFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFAT-DERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEec-ccceeeeCchHH
Confidence 33334444455666554 3458999999999999999988763 2222222 444555455443
No 125
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.97 E-value=17 Score=34.21 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceEE
Q 014165 188 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDV 239 (429)
Q Consensus 188 r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~ 239 (429)
++.|.+. .++ ++.+-.+..|++++....... ....++.+-+|.|-=--
T Consensus 99 ~~~L~~~---~~~-Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~g 147 (314)
T COG1940 99 AEELEAR---LGL-PVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGG 147 (314)
T ss_pred HHHHHHH---HCC-CEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEE
Confidence 4444443 354 468889999999887655443 34467777777665443
No 126
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=89.88 E-value=17 Score=34.05 Aligned_cols=70 Identities=14% Similarity=0.049 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCC--------CCCCCCCCchhHHHhHHHH
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~--------~~v~~~~~p~~avA~Ga~l 407 (429)
++++...+.+...+...+.-. +++.|+|-|+.+..+.+.+.+++.+.. .++....-...+.++||+.
T Consensus 224 ~~~~~~~~~la~~l~n~~~~l-----dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~ 298 (303)
T PRK13310 224 AHVERYLDLLAICLGNILTIV-----DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAF 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-----CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHH
Confidence 344444444444444444443 367788877777666666666666521 1233333456788999998
Q ss_pred HHH
Q 014165 408 QGG 410 (429)
Q Consensus 408 ~a~ 410 (429)
++.
T Consensus 299 ~~l 301 (303)
T PRK13310 299 LHL 301 (303)
T ss_pred Hhh
Confidence 763
No 127
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=89.59 E-value=4.8 Score=42.28 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.8
Q ss_pred CcEEEEecCCceEEEEEEECC
Q 014165 36 GTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~ 56 (429)
.+++|||+|.|++++++...+
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~ 38 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGP 38 (638)
T ss_pred CCEEEEEcCchhheeeeecCC
Confidence 469999999999999988533
No 128
>PRK13329 pantothenate kinase; Reviewed
Probab=89.59 E-value=16 Score=33.29 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHh
Q 014165 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 334 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
.+.+..-.+..+...|+..+++........-.|+++||.+. .|...++. ++.. + .+-|-.|+..++..
T Consensus 179 ~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~~~vilTGGda~--~l~~~l~~-----~~~~--~-~~LvL~GL~~i~~~ 246 (249)
T PRK13329 179 SDALTSGGTQAIAGAVERMFRHLAQHCGAEPECLLTGGAAW--KLAPSLTV-----PFEL--V-DNLVLDGLLVIAAR 246 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHhhcCC-----CCEE--C-CCcHHHHHHHHHhh
Confidence 34444455555555555555543211111236999999977 55555422 2222 2 23577888777654
No 129
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=5.3 Score=38.00 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCC----CCchhHHHhHHHHHHHhh
Q 014165 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG----VNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~----~~p~~avA~Ga~l~a~~~ 412 (429)
...+..+++||+.+.+.+++.|...+++..|... .+++.-=|.+.+++|.+.
T Consensus 289 ~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 289 GDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred CCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 4578899999999999999999999986555533 366677788888888776
No 130
>PRK09557 fructokinase; Reviewed
Probab=88.65 E-value=21 Score=33.42 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcC--------CCCCCCCCCchhHHHhHHH
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--------GKEPNKGVNPDEAVAYGAA 406 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~--------~~~v~~~~~p~~avA~Ga~ 406 (429)
.++++...+.+...+...+.-. +++.|+|.||.++.+.+.+.+++.+. ..+|....-...+.++||+
T Consensus 222 ~~~l~~~~~~La~~l~~l~~~l-----dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa 296 (301)
T PRK09557 222 ELAFRRYEDRLAKSLAHVINIL-----DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAA 296 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhh
Confidence 3444444444555555444433 36778888888777666555555442 1123333334567889988
Q ss_pred HHH
Q 014165 407 VQG 409 (429)
Q Consensus 407 l~a 409 (429)
...
T Consensus 297 ~~~ 299 (301)
T PRK09557 297 WLW 299 (301)
T ss_pred Hhh
Confidence 754
No 131
>PRK00976 hypothetical protein; Provisional
Probab=88.14 E-value=3.5 Score=38.85 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=49.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcH--HHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhc
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIP--KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~--~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~ 413 (429)
++++...+.+...+...+.-. +++.|+|.||.|+.+ .+.+.+++.+. .+ ...-...+.++||++.|....
T Consensus 242 ~aid~~~~~LA~~IAnLi~ll-----DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~--~a~LG~dAGaiGAA~iA~~i~ 313 (326)
T PRK00976 242 LAIDTLALFVAMEIASLLLLN-----PEDNVVLAGSVGEMDEPDVSERIKELLD-KK--VLVLGKESAAIGLALIARDIF 313 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCCEEEEcCccccCchhHHHHHHHHHhc-cc--ccccCCchHHHHHHHHHHHHh
Confidence 344444444444444444433 377899999999987 78999988883 22 222345899999999998865
Q ss_pred CCCC
Q 014165 414 GEGG 417 (429)
Q Consensus 414 ~~~~ 417 (429)
+-.+
T Consensus 314 ~G~~ 317 (326)
T PRK00976 314 NGKK 317 (326)
T ss_pred CCCc
Confidence 4443
No 132
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.95 E-value=2.7 Score=38.91 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=42.5
Q ss_pred CCeEEEEcC--CCCcH-HHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 363 IDEIVLVGG--STRIP-KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 363 ~~~V~l~GG--~s~~~-~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
...|+|+|. .++.| .+++.|++.| +.+++.. .....|.|+|+.|.-+.+-.+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~L--~~ksAA~G~AiIA~dI~gGk~ 317 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLVL--DSESAAIGLALIAEDIFSGKR 317 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEEe--cchhhhhhHHHHHHHHhCCcc
Confidence 347999998 89999 9999999999 5666554 238899999999988777665
No 133
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=87.86 E-value=7.5 Score=35.21 Aligned_cols=95 Identities=18% Similarity=0.259 Sum_probs=56.4
Q ss_pred cccceEE--ccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceEEEEEEEeCC
Q 014165 171 KIKDAVV--TVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNG 247 (429)
Q Consensus 171 ~~~~~~i--tvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~~v~~~~~~ 247 (429)
.+..+++ .+|.+++.- +.+++.+...+... .+.+-..||.+....+... ....+++||+|-|+|-.++++ ++
T Consensus 113 ~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~--~~ 187 (254)
T PF08735_consen 113 RPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK--DG 187 (254)
T ss_pred CHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe--CC
Confidence 4457777 667654421 12333333334444 5677777888787665553 467899999999999998884 33
Q ss_pred eEEEEEecCCCCCchHHHHHHHH
Q 014165 248 VFEVLSTNGDTHLGGEDFDQRVM 270 (429)
Q Consensus 248 ~~~~~~~~~~~~~Gg~~id~~l~ 270 (429)
.+.-+.+.-...+-...+...+.
T Consensus 188 rI~GvfEHHT~~l~~~kL~~~l~ 210 (254)
T PF08735_consen 188 RIYGVFEHHTGMLTPEKLEEYLE 210 (254)
T ss_pred EEEEEEecccCCCCHHHHHHHHH
Confidence 33333344434555555444443
No 134
>PLN02920 pantothenate kinase 1
Probab=87.60 E-value=21 Score=34.57 Aligned_cols=53 Identities=13% Similarity=-0.061 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCCCCcH-HHHHHHHh---hc--CCCCCCCCCCchhHHHhHHHHHHHhhc
Q 014165 361 NQIDEIVLVGGSTRIP-KVQQLLKD---YF--DGKEPNKGVNPDEAVAYGAAVQGGILS 413 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~~-~l~~~l~~---~~--~~~~v~~~~~p~~avA~Ga~l~a~~~~ 413 (429)
..++.|+++|...+.+ ..++.|.- .+ .+.+.....+..+.-|.||.+....-+
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~~~~ 354 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYEKHS 354 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhccccc
Confidence 4588999999999987 66664433 23 356677777999999999997765443
No 135
>PLN02666 5-oxoprolinase
Probab=87.30 E-value=11 Score=42.51 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=48.6
Q ss_pred cHHHHHHHhHH-HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCC-CCCCCCchhHHHhHHHH
Q 014165 330 TRARFEELNND-LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE-PNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 330 ~~~~~~~~~~~-~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~-v~~~~~p~~avA~Ga~l 407 (429)
+-++....+.. .-..+.+.|+......+.+..+ -.++..||.+ |...-.|.+.+ +.+ +..+.+|.-..|.|+++
T Consensus 455 ~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~l-gi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 455 SVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARAL-GMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHc-CCCEEEeCCCccHHHHHHHHh
Confidence 44444433333 3344555555555554544322 2355566664 58888999999 555 88888999999999987
Q ss_pred HHHh
Q 014165 408 QGGI 411 (429)
Q Consensus 408 ~a~~ 411 (429)
.-..
T Consensus 531 ad~~ 534 (1275)
T PLN02666 531 ADVV 534 (1275)
T ss_pred hhhh
Confidence 6544
No 136
>PRK03011 butyrate kinase; Provisional
Probab=87.18 E-value=2.7 Score=40.52 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=49.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcC---CCCCCCCCCchhHHHhHHHHHHHhh
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~---~~~v~~~~~p~~avA~Ga~l~a~~~ 412 (429)
.+++..+..+...|-...... ..+++.|+++||.+..+.+.+.|++.+. ...+....+...+.+.||+.. +
T Consensus 272 ~ald~~~~~lak~I~~l~~~L---~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv---l 345 (358)
T PRK03011 272 LVYEAMAYQIAKEIGAMAAVL---KGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV---L 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH---H
Confidence 344444444444444444433 1248899999999999999999988874 334555555568999997654 4
Q ss_pred cCCCC
Q 014165 413 SGEGG 417 (429)
Q Consensus 413 ~~~~~ 417 (429)
.+.++
T Consensus 346 ~g~e~ 350 (358)
T PRK03011 346 RGEEE 350 (358)
T ss_pred cCCcc
Confidence 44444
No 137
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=86.48 E-value=30 Score=32.83 Aligned_cols=112 Identities=17% Similarity=0.084 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHcCCc---ccceEEccCCCCCHHHHHHHHHHHHHcCC--ceeeeccchhHHHHHhhhccCCCccEEE
Q 014165 154 AMILTKMKETAEAFLGKK---IKDAVVTVPAYFNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNIL 228 (429)
Q Consensus 154 ~~~l~~l~~~~~~~~~~~---~~~~~itvP~~~~~~~r~~l~~a~~~ag~--~~~~~v~E~~Aaa~~~~~~~~~~~~~~l 228 (429)
..-+..+++++....+.. .+-+.+|+-....-.-+.-+..|-..|+- ++..-|.--+|-|+.........+..++
T Consensus 83 r~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPFl 162 (405)
T KOG2707|consen 83 RENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPFL 162 (405)
T ss_pred HHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCcee
Confidence 444455555554443333 33466776656665555555555544432 2333466677888877666656788888
Q ss_pred EEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHH
Q 014165 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (429)
Q Consensus 229 vvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~ 267 (429)
.+=+-||+|-+.+.+.- ..++++...-+.. =|+.+|.
T Consensus 163 ~lLvSGGH~llvla~~~-~~~~llg~TvDiA-pGe~lDK 199 (405)
T KOG2707|consen 163 ALLVSGGHTLLVLANGV-GDHELLGQTVDIA-PGEALDK 199 (405)
T ss_pred eEeeeCCceEEEEeccc-cceeeeecccccc-hHHHHHH
Confidence 88899999988766632 3455554433232 3444444
No 138
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=84.79 E-value=2.1 Score=45.30 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCC-c--hhHHHhHHHHHHH
Q 014165 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN-P--DEAVAYGAAVQGG 410 (429)
Q Consensus 362 ~~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~~~-p--~~avA~Ga~l~a~ 410 (429)
.++.|+|+||.+...+|.+.+.+.+. +.++..+.. | +.+++.|.+++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 36789999999999999999998874 344544432 2 6789999988774
No 139
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=83.40 E-value=1.2 Score=40.56 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.7
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
+++|||+||+++++++.+.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 57999999999999998844
No 140
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=81.83 E-value=7.6 Score=37.55 Aligned_cols=82 Identities=21% Similarity=0.176 Sum_probs=53.2
Q ss_pred eecHHHHHHHhHHHHHHHHH-HHHHHHHHcCCCcCCCCe-EEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCc-hhHHHhH
Q 014165 328 PLTRARFEELNNDLFRKTMG-PVKKAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNP-DEAVAYG 404 (429)
Q Consensus 328 ~i~~~~~~~~~~~~~~~i~~-~i~~~l~~~~~~~~~~~~-V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p-~~avA~G 404 (429)
.-...++-..++..++++.- .++..+++.+ .+. +.++||.+...-....|.+..+-.++.++.-+ +..+|.|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 34566676666666655443 4455666655 344 99999999998888889887533356665555 6789999
Q ss_pred HHHHHHhhcC
Q 014165 405 AAVQGGILSG 414 (429)
Q Consensus 405 a~l~a~~~~~ 414 (429)
|++++....+
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999985443
No 141
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.39 E-value=12 Score=33.82 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=48.2
Q ss_pred eeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 014165 203 ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (429)
Q Consensus 203 ~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 274 (429)
..+++.-.|+++.+..+.. ....+|||+|-|+|..+++.-+ .+.-+.+.....+....+...|.++..
T Consensus 207 av~mDskfaav~gal~dpa--a~palvVd~GngHttaalvded--RI~gv~EHHT~~Lspekled~I~rf~~ 274 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVDED--RIVGVYEHHTIRLSPEKLEDQIIRFVE 274 (342)
T ss_pred EEEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEecCC--eEEEEeecccccCCHHHHHHHHHHHHh
Confidence 4567777777777766555 3489999999999999888743 554455555567777777666666653
No 142
>PRK14878 UGMP family protein; Provisional
Probab=81.06 E-value=52 Score=31.31 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCC
Q 014165 363 IDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKG 394 (429)
Q Consensus 363 ~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~ 394 (429)
++.|+|+||-+...++++.+.+.+. +.++..+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~ 275 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVV 275 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECC
Confidence 6679999999999999999999763 3344444
No 143
>PLN02362 hexokinase
Probab=80.67 E-value=20 Score=36.31 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCC--ceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEE
Q 014165 186 AQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 240 (429)
Q Consensus 186 ~~r~~l~~a~~~ag~--~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~ 240 (429)
.-.+.|++++.+-|+ +.+.++.+..+..++..+... +..+-+=+|.||=-+.
T Consensus 206 DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~---~~~iG~IlGTGtNacY 259 (509)
T PLN02362 206 DVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP---DTVAAVIIGTGTNACY 259 (509)
T ss_pred hHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC---CceEEEEEECCccceE
Confidence 347788999888886 446678999988887655543 2334444666665443
No 144
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=80.36 E-value=1.8 Score=32.90 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.0
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
.++|||+|.+++++++.+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred cEEEEccCCCeEEEEEECCC
Confidence 48999999999999987543
No 145
>PTZ00107 hexokinase; Provisional
Probab=80.14 E-value=22 Score=35.59 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCC--ceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceEEEEE
Q 014165 186 AQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSIL 242 (429)
Q Consensus 186 ~~r~~l~~a~~~ag~--~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~~v~ 242 (429)
.-.+.|++++.+-|+ ..+.++.+..|..++..+.... ..+..+-+=+|.|+=-+.+-
T Consensus 195 DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 195 DVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred hHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeee
Confidence 346778889888876 4466799999998887666521 12233333466665544433
No 146
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=79.10 E-value=2.1 Score=37.82 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCce---eeeccchhHHHHHhhh
Q 014165 188 RQATKDAGIIAGLNV---ARIINEPTAAAIAYGL 218 (429)
Q Consensus 188 r~~l~~a~~~ag~~~---~~~v~E~~Aaa~~~~~ 218 (429)
.+.|++++.+.|+.. +.++.+..|..++..+
T Consensus 171 ~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 171 VELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred chhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 677888998888864 4568888888876654
No 147
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=78.64 E-value=2.3 Score=43.26 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred cCCcEEEEecCCceEEEEEEECC
Q 014165 34 KLGTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 34 ~~~~~iGID~Gt~~t~va~~~~~ 56 (429)
.+++++|||+||+++|+.+.+.+
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCC
Confidence 36789999999999999988765
No 148
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=76.68 E-value=4.7 Score=32.09 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=18.3
Q ss_pred EEEEecCCceEEEEEEECCeEE
Q 014165 38 VIGIDLGTTYSCVGVYKNGHVE 59 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~~~ 59 (429)
+++||+|++++.++++..+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~ 22 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG 22 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCC
Confidence 5899999999999999987643
No 149
>PLN02405 hexokinase
Probab=76.00 E-value=47 Score=33.63 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCc--eeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEE
Q 014165 187 QRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (429)
Q Consensus 187 ~r~~l~~a~~~ag~~--~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~ 243 (429)
-.+.|++|+.+-|++ .+.++.+..+..++..+... +..+-+=+|.||=-+.+-+
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~---~~~iG~IlGTGtNacY~E~ 262 (497)
T PLN02405 207 VVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP---DVVAAVILGTGTNAAYVER 262 (497)
T ss_pred HHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC---CceEEEEEeCCeeeEEEee
Confidence 377889999888874 45579999998887766544 2344444677766555443
No 150
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.91 E-value=3.5 Score=43.16 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=29.6
Q ss_pred eccchhHHHHHhhhc-cCCCccEEEEEEeCCCceEEEEEEEe
Q 014165 205 IINEPTAAAIAYGLD-KKGGEKNILVFDLGGGTFDVSILTID 245 (429)
Q Consensus 205 ~v~E~~Aaa~~~~~~-~~~~~~~~lvvDiG~~ttd~~v~~~~ 245 (429)
+.+-|.|...++.+. ....+ +++++|+||.|||++++..+
T Consensus 258 I~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~~G 298 (674)
T COG0145 258 ILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALIIDG 298 (674)
T ss_pred EeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeeecC
Confidence 566677777766555 22233 69999999999999999854
No 151
>PLN02914 hexokinase
Probab=75.86 E-value=46 Score=33.59 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCC--ceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEE
Q 014165 187 QRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (429)
Q Consensus 187 ~r~~l~~a~~~ag~--~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~ 244 (429)
-.+.|++++++-|+ +.+.++.+..+..++..+... +..+-+=+|.||=-+.+-+.
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~---~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 207 VVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD---DVMVAVILGTGTNACYVERT 263 (490)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC---CceEEEEEECCeeeEEEeec
Confidence 37788999888776 445679999998887766544 23344446777665554443
No 152
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=74.99 E-value=2.8 Score=42.67 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.4
Q ss_pred CcEEEEecCCceEEEEEEECC
Q 014165 36 GTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~ 56 (429)
..++|||+||+++|+++++.+
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 378999999999999998754
No 153
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=74.81 E-value=7.2 Score=37.32 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCC
Q 014165 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKG 394 (429)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~ 394 (429)
+.+.+.+.++++.. .++.++++||-+...+|++.+++... +.++..+
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p 297 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAM 297 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeC
Confidence 44444445555443 36779999999999999999999863 3444444
No 154
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=74.56 E-value=2.9 Score=42.77 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=18.6
Q ss_pred CcEEEEecCCceEEEEEEECC
Q 014165 36 GTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~ 56 (429)
++++|||+||+++|+++++.+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 589999999999999988754
No 155
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.33 E-value=3.9 Score=33.40 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.1
Q ss_pred CcEEEEecCCceEEEEEEECCe
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~ 57 (429)
+.++|||+|+..+.+|+.+...
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 3689999999999999998764
No 156
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=74.22 E-value=1.1e+02 Score=31.23 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=50.1
Q ss_pred ecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHH-HHHHhhcCCCCCCCCCCc-hhHHHhHHH
Q 014165 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ-QLLKDYFDGKEPNKGVNP-DEAVAYGAA 406 (429)
Q Consensus 329 i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~-~~l~~~~~~~~v~~~~~p-~~avA~Ga~ 406 (429)
....++....+..++++...+.+.+.+.. ....+.++||.+...-.. ..+++-+ ...+.+.+.+ +...|.||+
T Consensus 256 ~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 256 ERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHHH
Confidence 34455555556666666666555555431 145699999998876666 5555544 4455554433 578999999
Q ss_pred HHHHhh
Q 014165 407 VQGGIL 412 (429)
Q Consensus 407 l~a~~~ 412 (429)
++++-.
T Consensus 331 l~~~~~ 336 (555)
T COG2192 331 LAVKRE 336 (555)
T ss_pred HHHHHH
Confidence 998654
No 157
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=72.61 E-value=86 Score=29.50 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhc
Q 014165 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (429)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~ 386 (429)
+.+.+.+++.++.. .++.|+|+||-+...++++.|.+.+
T Consensus 244 ~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 244 DHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33334444444443 3678999999999999999999887
No 158
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=71.92 E-value=13 Score=38.17 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCC---chhHHHhHHHHHHHhhcCC
Q 014165 363 IDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN---PDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 363 ~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~~~---p~~avA~Ga~l~a~~~~~~ 415 (429)
++.|+|+||-+...++.+.|.+.+. +.++..+.. .+.+++.|++.+....++.
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g~ 303 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGD 303 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcCC
Confidence 6679999999999999999996652 345555432 2578888877765544443
No 159
>PRK10331 L-fuculokinase; Provisional
Probab=71.88 E-value=3.4 Score=41.62 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=17.7
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
+++|||+||+++|+++.+.+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred eEEEEecCCCceEEEEEcCC
Confidence 78999999999999988743
No 160
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=71.19 E-value=9.3 Score=36.20 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCC--c-hhHHHhHHH
Q 014165 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN--P-DEAVAYGAA 406 (429)
Q Consensus 362 ~~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~~~--p-~~avA~Ga~ 406 (429)
.++.|+++||.+...++.+.|.+.+. +.++..+.. | +.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 36779999999999999999999873 234444332 1 456666654
No 161
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=70.73 E-value=16 Score=34.10 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=44.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCC------CCCCCCCchhHHHhHHHHH
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQ 408 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~------~v~~~~~p~~avA~Ga~l~ 408 (429)
.++++...+.+...+...+.-. +++.|++.|+.+..+.+.+.+++.+... ++........+.+.||+.+
T Consensus 211 ~~~~~~~~~~la~~l~~l~~~~-----dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~ 285 (291)
T PRK05082 211 QALINRSAQAIARLIADLKATL-----DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALW 285 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHH
Confidence 4455555555555555555443 3678898888877776667777766321 2233334467889999988
Q ss_pred HHh
Q 014165 409 GGI 411 (429)
Q Consensus 409 a~~ 411 (429)
+..
T Consensus 286 ~~~ 288 (291)
T PRK05082 286 AQG 288 (291)
T ss_pred hcc
Confidence 643
No 162
>PTZ00297 pantothenate kinase; Provisional
Probab=68.86 E-value=2.4e+02 Score=33.04 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=38.2
Q ss_pred cCCCCeEEEEcC-CCCcHHHHHHHHhhc-----CCCCCCCCCCchhHHHhHHHHHH
Q 014165 360 KNQIDEIVLVGG-STRIPKVQQLLKDYF-----DGKEPNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 360 ~~~~~~V~l~GG-~s~~~~l~~~l~~~~-----~~~~v~~~~~p~~avA~Ga~l~a 409 (429)
...++.|+++|+ ....|..++.|.... ++.+.....+..+.-|.||.+..
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 345889999999 666888888877654 34566666688899999998764
No 163
>PRK04123 ribulokinase; Provisional
Probab=67.53 E-value=5.5 Score=41.02 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.6
Q ss_pred CcEEEEecCCceEEEEEEE
Q 014165 36 GTVIGIDLGTTYSCVGVYK 54 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~ 54 (429)
.+++|||+||+++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4799999999999999988
No 164
>PRK15027 xylulokinase; Provisional
Probab=67.26 E-value=4.9 Score=40.65 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=17.4
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
+++|||+||+++|+++.+..
T Consensus 1 ~~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred CEEEEEecccceEEEEEcCC
Confidence 47999999999999988754
No 165
>PLN02669 xylulokinase
Probab=67.21 E-value=5.5 Score=41.04 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.4
Q ss_pred ccCCcEEEEecCCceEEEEEEECC
Q 014165 33 TKLGTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 33 ~~~~~~iGID~Gt~~t~va~~~~~ 56 (429)
++..++||||+||+.+|+++.+.+
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcCC
Confidence 456789999999999999988744
No 166
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=66.86 E-value=7 Score=32.03 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.2
Q ss_pred CCcEEEEecCCceEEEEEEECC
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~ 56 (429)
++.++|||+|+..+.+|+.+..
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4569999999999999998764
No 167
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=66.43 E-value=5.1 Score=40.33 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=17.7
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
.++|||+||+++|+++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 58999999999999998754
No 168
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=65.85 E-value=22 Score=34.25 Aligned_cols=71 Identities=17% Similarity=0.043 Sum_probs=45.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCC-CCCCCC--CCchhHHHhHHHHH
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-KEPNKG--VNPDEAVAYGAAVQ 408 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~-~~v~~~--~~p~~avA~Ga~l~ 408 (429)
..+++..++.+...|-..+...+ .+++.|+++||.+..+.+.+.+++.+.. .+|..- .+..++.|.||...
T Consensus 269 ~~a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~rv 342 (351)
T TIGR02707 269 KLILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALRV 342 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHHH
Confidence 34555555555555555554431 2478899999999999999999998742 233322 23356788887643
No 169
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=64.72 E-value=6.1 Score=40.07 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.6
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
+++|||+||+++++++++.+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 68999999999999988744
No 170
>PLN02295 glycerol kinase
Probab=64.65 E-value=5.4 Score=40.69 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=17.2
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
.++|||+||+++++++++.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~~ 20 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRD 20 (512)
T ss_pred CEEEEecCCCceEEEEECCC
Confidence 47999999999999988743
No 171
>PRK00047 glpK glycerol kinase; Provisional
Probab=64.53 E-value=6.3 Score=40.06 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.2
Q ss_pred CcEEEEecCCceEEEEEEECC
Q 014165 36 GTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~ 56 (429)
.++||||+||+++++++++.+
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred CEEEEEecCCCceEEEEECCC
Confidence 478999999999999988643
No 172
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=64.50 E-value=6.7 Score=40.26 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=17.0
Q ss_pred cEEEEecCCceEEEEEEE
Q 014165 37 TVIGIDLGTTYSCVGVYK 54 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~ 54 (429)
+++|||+||+++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999988
No 173
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=63.48 E-value=5.8 Score=40.35 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.3
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
+++|||+|||++++++.+.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred CEEEEeccccceEEEEEcCC
Confidence 47999999999999988644
No 174
>PRK09604 UGMP family protein; Validated
Probab=61.79 E-value=1.5e+02 Score=28.28 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCC--c-hhHHHhHHHHHHHhhcC
Q 014165 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN--P-DEAVAYGAAVQGGILSG 414 (429)
Q Consensus 362 ~~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~~~--p-~~avA~Ga~l~a~~~~~ 414 (429)
.++.|+++||.+...++.+.|.+.+. +.++..+.. + +.+++.|++=+-....+
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 36789999999999999999999873 334444433 2 57788888755555554
No 175
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=60.69 E-value=9.7 Score=31.25 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.5
Q ss_pred CcEEEEecCCceEEEEEEECCe
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~ 57 (429)
+.++|+|+|+-.+.+|+++...
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 5799999999999999988763
No 176
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=59.28 E-value=8.5 Score=39.55 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.8
Q ss_pred EEEEecCCceEEEEEEECC
Q 014165 38 VIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~ 56 (429)
++|||+||+++++++.+.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 6899999999999998643
No 177
>PLN02596 hexokinase-like
Probab=59.17 E-value=1.5e+02 Score=30.00 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCC--ceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEE
Q 014165 186 AQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (429)
Q Consensus 186 ~~r~~l~~a~~~ag~--~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~ 244 (429)
.-.+.|++++.+.|+ +.+-++.+..+..++..+... +..+-+=+|.|+=-+.+-+.
T Consensus 206 Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~---~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 206 ALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK---DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC---CeEEEEEEecccceEEEEEc
Confidence 336667888887776 446679999998887766644 23333447777766655443
No 178
>PRK13331 pantothenate kinase; Reviewed
Probab=58.71 E-value=1.3e+02 Score=27.53 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.9
Q ss_pred cCCcEEEEecCCceEEEEEEECCe
Q 014165 34 KLGTVIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 34 ~~~~~iGID~Gt~~t~va~~~~~~ 57 (429)
..+..+.||+|+|+++++++++++
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEECCE
Confidence 356789999999999999999764
No 179
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=57.93 E-value=39 Score=23.09 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=26.7
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHcCCcee
Q 014165 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (429)
Q Consensus 174 ~~~itvP~~~~~~~r~~l~~a~~~ag~~~~ 203 (429)
.-.++.|..+++.+|..+.++|...|+...
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 567788999999999999999999999764
No 180
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=56.24 E-value=68 Score=30.42 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=53.2
Q ss_pred HHcCCceeeeccchhHHHHHhhhccCC-----------CccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCch-H
Q 014165 196 IIAGLNVARIINEPTAAAIAYGLDKKG-----------GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG-E 263 (429)
Q Consensus 196 ~~ag~~~~~~v~E~~Aaa~~~~~~~~~-----------~~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg-~ 263 (429)
+..|++.+.++.+=+|.+++....... .+...+|+-.|.|-=-..++...+......++.++..+.- .
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~~~~~v~~sEgGH~~fap~~ 167 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDGDGYYVLPSEGGHVDFAPRT 167 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEETTEEEEEEE-GGGSB---SS
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecCCceEeCCCccccccCCCCC
Confidence 355889999999999998877332111 5678899999988877777777666666666677666655 4
Q ss_pred HHHHHHHHHHHHH
Q 014165 264 DFDQRVMEYFIKL 276 (429)
Q Consensus 264 ~id~~l~~~l~~~ 276 (429)
+.+..+.+++.++
T Consensus 168 ~~e~~l~~~l~~~ 180 (316)
T PF02685_consen 168 DEEAELLRFLRRR 180 (316)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5566777777433
No 181
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=55.93 E-value=18 Score=34.38 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=30.2
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhhcC--CCCCCCCCC--c-hhHHHhH
Q 014165 363 IDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN--P-DEAVAYG 404 (429)
Q Consensus 363 ~~~V~l~GG~s~~~~l~~~l~~~~~--~~~v~~~~~--p-~~avA~G 404 (429)
++.|+|+||-+...++.+.|.+.+. +.++..+.. + +.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 6679999999999999999999652 344444432 1 4566666
No 182
>PRK13331 pantothenate kinase; Reviewed
Probab=55.48 E-value=15 Score=33.54 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCC--CCCCCCCchhHHHhHHHHHHH
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK--EPNKGVNPDEAVAYGAAVQGG 410 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~--~v~~~~~p~~avA~Ga~l~a~ 410 (429)
+.+-.-.+......|+..+++...... --.|+++||.+. .+.+.++..++.. +... +| .-+-.|+...+.
T Consensus 177 ~ai~sGi~~g~~g~i~~~i~~~~~~~~-~~~vi~TGG~a~--~l~~~~~~~~~~~~~~~~~--~~-~LvL~GL~~i~~ 248 (251)
T PRK13331 177 EAIQSGVIYTILAGLRDFIEDWLSLFP-DGKIVLTGGDGE--LLHNYLQDLDPELAQRLRV--DP-NLIFWGIAAIRQ 248 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCCHH--HHHHHhhccccccccccEE--Cc-chHHHHHHHHHh
Confidence 333344444444444444443211111 235999999976 7877776653211 1222 22 335566655543
No 183
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=55.21 E-value=42 Score=32.88 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=37.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CcHHHHHHHHhhcC
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s-~~~~l~~~l~~~~~ 387 (429)
..+++-++.++...|-...... ...+|.|+++||.+ +++.+++.|.+.+.
T Consensus 299 ~lA~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 299 KLALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3455556666666665555543 13599999999999 99999999999885
No 184
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=54.00 E-value=74 Score=31.37 Aligned_cols=52 Identities=27% Similarity=0.344 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhc
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~ 386 (429)
+++-+.+++.|.+.+.+.+.+.+...+++..++++|-..-...|...=-+.+
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L 107 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGL 107 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHh
Confidence 3444456677788888888998888888999999998766555544333333
No 185
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=53.71 E-value=45 Score=33.33 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc---eeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEEEEEEEe
Q 014165 180 PAYFNDAQRQATKDAGIIAGLN---VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID 245 (429)
Q Consensus 180 P~~~~~~~r~~l~~a~~~ag~~---~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~~v~~~~ 245 (429)
+......-.+.|++++++-|+. .+.++.+..+..++..+... ++.+-|-+|.||--+.+-+.+
T Consensus 186 ~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~---~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 186 TDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP---NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred hhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC---CcEEEEEECCCccceeeeecc
Confidence 3333445578899999999886 34568888887776655544 456666788888777666654
No 186
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=52.89 E-value=86 Score=29.19 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=41.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEE-EEcCCCCcHHHHHHHHhhcC
Q 014165 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIV-LVGGSTRIPKVQQLLKDYFD 387 (429)
Q Consensus 334 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~-l~GG~s~~~~l~~~l~~~~~ 387 (429)
+....+..-.-+...+.+.+++.+.++.+|+.++ -+..++-.|.|..+|-++|+
T Consensus 76 ~~~a~~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 76 LAAAREEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 3344444444567888899999999988998654 46778899999999999994
No 187
>PLN02377 3-ketoacyl-CoA synthase
Probab=52.72 E-value=61 Score=32.88 Aligned_cols=55 Identities=7% Similarity=0.231 Sum_probs=44.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCCCcHHHHHHHHhhcC
Q 014165 333 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (429)
Q Consensus 333 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l-~GG~s~~~~l~~~l~~~~~ 387 (429)
.++...+...+-+.+.+.+++++++.++.+|+.|++ +.+....|.+..+|.++++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 456666666677788899999999999999999887 3444468999999999993
No 188
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=52.23 E-value=38 Score=23.26 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.9
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHcCCcee
Q 014165 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (429)
Q Consensus 174 ~~~itvP~~~~~~~r~~l~~a~~~ag~~~~ 203 (429)
.-.++.|..+++.+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 455667999999999999999999998764
No 189
>PRK13326 pantothenate kinase; Reviewed
Probab=51.41 E-value=19 Score=33.16 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.6
Q ss_pred CcEEEEecCCceEEEEEEECCe
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~ 57 (429)
.+.+.||+|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 4679999999999999999875
No 190
>PTZ00297 pantothenate kinase; Provisional
Probab=51.20 E-value=76 Score=36.85 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=76.7
Q ss_pred cEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Q 014165 225 KNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKR 304 (429)
Q Consensus 225 ~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 304 (429)
...+-+|+||.-+.+..++=.. .+... .+++..- +.+..+++..- ..|...+|-+|.
T Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~ 1095 (1452)
T PTZ00297 1039 QVPVTIDIGGTFAKIAYVQPPG-GFAFP----------TYIVHEA-----SSLSEKLGLRT-------FHFFADAEAAES 1095 (1452)
T ss_pred cCceEEecCceeEEEEEEeCCC-CCCCc----------chhhhhh-----hhhhhccCccc-------cccccChHHhhh
Confidence 4467899999999987665321 11000 1111111 11123333221 223355666676
Q ss_pred HccCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHh
Q 014165 305 ALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKD 384 (429)
Q Consensus 305 ~l~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~ 384 (429)
.+..... ...|.-.-.++.-.+++++ .+.+.+.....+........|.++||+|. .+.+.+++
T Consensus 1096 ~~~~~~~-------~~~g~l~f~~f~t~~i~~~--------~~~l~~~~~~~~~~~~~~~~i~~TGGGA~--k~~~~~~~ 1158 (1452)
T PTZ00297 1096 ELRTRPH-------SRVGTLRFAKIPSKQIPDF--------ADYLAGSHAINYYKPQYRTKVRATGGGAF--KYASVAKK 1158 (1452)
T ss_pred hhccCCC-------CCceEEEEEEecccCHHHH--------HHHHHhhhhhcccCcCCceEEEEeCCcHH--HHHHHHHH
Confidence 6644221 1122222234444455554 33333332222223345678999999987 88888888
Q ss_pred hcCCCCCCCCCCchhHHHhHHHHHHH
Q 014165 385 YFDGKEPNKGVNPDEAVAYGAAVQGG 410 (429)
Q Consensus 385 ~~~~~~v~~~~~p~~avA~Ga~l~a~ 410 (429)
.+ +.++.. .|...++..|+-..-.
T Consensus 1159 ~~-~~~~~~-~dEm~~li~G~~~l~~ 1182 (1452)
T PTZ00297 1159 VL-GINFSV-MREMDAVVKGLNLVIR 1182 (1452)
T ss_pred Hh-CCCcce-ecHHHHHHHHHHHHHh
Confidence 88 454443 3778899999987753
No 191
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=49.47 E-value=62 Score=29.91 Aligned_cols=69 Identities=28% Similarity=0.408 Sum_probs=44.4
Q ss_pred eecHHHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhH
Q 014165 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEA 400 (429)
Q Consensus 328 ~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~a 400 (429)
.++.++|++...|.+.+|.+.+.+.+.+.++. .+.-|+..-|+.- .|.+.-..-+.-..+.++.||.++
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g~--~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSGG--ALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcch--HHHHHHhcCCcEEeecccccHHHH
Confidence 35899999999999999999999999987543 3455666655533 444443333322233444455443
No 192
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=45.21 E-value=34 Score=28.50 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.9
Q ss_pred cEEEEecCCceEEEEEEE
Q 014165 37 TVIGIDLGTTYSCVGVYK 54 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~ 54 (429)
.++|||.|++++..|+..
T Consensus 1 rILGIDPGl~~~G~av~~ 18 (154)
T cd00529 1 RILGIDPGSRNTGYGVIE 18 (154)
T ss_pred CEEEEccCcCceEEEEEE
Confidence 379999999999999865
No 193
>PRK07058 acetate kinase; Provisional
Probab=45.03 E-value=73 Score=31.12 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CcHHHHHHHHhhcC
Q 014165 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (429)
Q Consensus 334 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s-~~~~l~~~l~~~~~ 387 (429)
-..+++-++.++...|-...... ..+|.|+++||-+ +++.+++.+.+.+.
T Consensus 294 A~lA~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 294 AREALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34455666666666665555543 3589999999999 99999999999884
No 194
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=44.74 E-value=78 Score=21.62 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=26.9
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHcCCceee
Q 014165 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVAR 204 (429)
Q Consensus 174 ~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~ 204 (429)
...+..|..++..+|..+.++|+..|+....
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S 47 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHES 47 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceEe
Confidence 4677889999999999999999999997643
No 195
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=44.50 E-value=67 Score=29.82 Aligned_cols=80 Identities=21% Similarity=0.137 Sum_probs=46.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCcCC--CCeEEEEcCCCC-cHHHHHHHHhhcCC---CCCCCCCCchhHHHhHHHHH
Q 014165 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQ--IDEIVLVGGSTR-IPKVQQLLKDYFDG---KEPNKGVNPDEAVAYGAAVQ 408 (429)
Q Consensus 335 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~--~~~V~l~GG~s~-~~~l~~~l~~~~~~---~~v~~~~~p~~avA~Ga~l~ 408 (429)
.++|+..-+.+...|..++........+ .=.|+++||.-. +..+++-...-+.+ .+-.....|...-|+|||++
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~l 313 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAIL 313 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHH
Confidence 4555555555666667777766543222 346999999644 34444333222211 11122236788899999999
Q ss_pred HHhhcC
Q 014165 409 GGILSG 414 (429)
Q Consensus 409 a~~~~~ 414 (429)
||.+..
T Consensus 314 aa~~~~ 319 (336)
T KOG1794|consen 314 AASLDN 319 (336)
T ss_pred hhhhcc
Confidence 998765
No 196
>PLN02854 3-ketoacyl-CoA synthase
Probab=44.36 E-value=91 Score=31.80 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=42.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCCCcHHHHHHHHhhcC
Q 014165 333 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (429)
Q Consensus 333 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l-~GG~s~~~~l~~~l~~~~~ 387 (429)
.|++..+..-.-++..+.+.+++++.+..+|+.|++ +.+....|.+..+|.++++
T Consensus 180 ~~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 180 CMEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 345555555555778888999999999889999887 3444457999999999994
No 197
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=44.31 E-value=85 Score=30.78 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CcHHHHHHHHhhcC
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s-~~~~l~~~l~~~~~ 387 (429)
.+++-++.++...|-......+ ..+|.|+++||-+ +++.+++.+.+.+.
T Consensus 304 lA~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 304 LAIKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3445555555555554444432 2489999999999 99999999999885
No 198
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=44.18 E-value=1.4e+02 Score=30.92 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=47.1
Q ss_pred ccceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 172 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 172 ~~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
..+.+|++|-..... +.+++...+++.+..-.|..|+.++.++.....+-.++++-.|-|.+..
T Consensus 16 GV~~vFGipG~~~~~----l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 79 (579)
T TIGR03457 16 GVTHAFGIMGSAFMD----AMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNC 79 (579)
T ss_pred CCCEEEEccCcchHH----HHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHH
Confidence 358899999765444 3444455789999999999999888877765444566777788888874
No 199
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.46 E-value=97 Score=21.21 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=27.1
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCcee
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~ 203 (429)
..-.++.|..+++.+|..+.++|...|+...
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3567788999999999999999999999764
No 200
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=42.93 E-value=28 Score=34.58 Aligned_cols=58 Identities=28% Similarity=0.364 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHH-----cCCce------eeeccchhHHHHHhhhccCC----Cc-cEEEEEEeCCCceEEEEEE
Q 014165 186 AQRQATKDAGII-----AGLNV------ARIINEPTAAAIAYGLDKKG----GE-KNILVFDLGGGTFDVSILT 243 (429)
Q Consensus 186 ~~r~~l~~a~~~-----ag~~~------~~~v~E~~Aaa~~~~~~~~~----~~-~~~lvvDiG~~ttd~~v~~ 243 (429)
..|+.+++.... -|++. ..+++=|.|+......-... .+ ..+++||+||-|||+.-+.
T Consensus 194 paR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 194 AAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 457777666432 24433 34566677775554332221 22 3489999999999995444
No 201
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=42.55 E-value=1.2e+02 Score=31.17 Aligned_cols=63 Identities=10% Similarity=-0.019 Sum_probs=46.1
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-.. ...+.+++...+++.+....|..|+.++-++......-.++++-.|-|.+..
T Consensus 18 V~~vFGvpG~~----~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 80 (554)
T TIGR03254 18 INTIYGVVGIP----VTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNG 80 (554)
T ss_pred CCEEEeCCCcc----hhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhH
Confidence 57899999742 2334555566789999999999999888777766444467777778888765
No 202
>PLN02902 pantothenate kinase
Probab=42.41 E-value=2.6e+02 Score=30.40 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred cEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Q 014165 225 KNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKR 304 (429)
Q Consensus 225 ~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 304 (429)
...++|+||.|+ +++++.+.. .....++..+||-.+ .-|.+++ .....+..+.+.+
T Consensus 214 yPyLLVNIGSGV---SilkV~~~~--~~~RVgGTsIGGGT~-~GL~~LL-------------tg~~sFdEll~LA----- 269 (876)
T PLN02902 214 FPYLLVNIGSGV---SMIKVDGDG--KFERVSGTNVGGGTY-WGLGRLL-------------TKCKSFDELLELS----- 269 (876)
T ss_pred CceEEEEcCCce---EEEEEecCC--cEEEecccccccHhH-HHHHHHH-------------cCCCCHHHHHHHH-----
Q ss_pred HccCCceEEEEEecccCC-cceeeeecHHHHHHH---------------hHHHHHHHHHHHHHHHHHcCCC---cCCCCe
Q 014165 305 ALSSQHQVRVEIESLFDG-IDFSEPLTRARFEEL---------------NNDLFRKTMGPVKKAMEDAGLE---KNQIDE 365 (429)
Q Consensus 305 ~l~~~~~~~~~i~~~~~~-~~~~~~i~~~~~~~~---------------~~~~~~~i~~~i~~~l~~~~~~---~~~~~~ 365 (429)
+-......++.+..++.| ..-.+.+..+-+.+- -+++..++...|...+.....- ...++.
T Consensus 270 ~~Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~ikr 349 (876)
T PLN02902 270 QRGDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKR 349 (876)
T ss_pred hcCCccccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Q ss_pred EEEEcC-CCCcHHHHHHHHhhc-----CCCCCCCCCCchhHHHhHHHH
Q 014165 366 IVLVGG-STRIPKVQQLLKDYF-----DGKEPNKGVNPDEAVAYGAAV 407 (429)
Q Consensus 366 V~l~GG-~s~~~~l~~~l~~~~-----~~~~v~~~~~p~~avA~Ga~l 407 (429)
|+++|. .-.-+...+.|...+ ++.+.....+-.+.-|.||.+
T Consensus 350 IvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl 397 (876)
T PLN02902 350 IFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFM 397 (876)
T ss_pred EEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHh
No 203
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=41.06 E-value=26 Score=35.36 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=18.0
Q ss_pred CCcEEEEecCCceEEEEEEE
Q 014165 35 LGTVIGIDLGTTYSCVGVYK 54 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~ 54 (429)
...++|||+||+++++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 45789999999999999987
No 204
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=40.67 E-value=1.8e+02 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=22.6
Q ss_pred CccEEEEEEeCCCceEEEEEEEeCC
Q 014165 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (429)
Q Consensus 223 ~~~~~lvvDiG~~ttd~~v~~~~~~ 247 (429)
....++.+|+||.+.-++.++..+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 5667999999999999999999876
No 205
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=40.29 E-value=20 Score=29.00 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.7
Q ss_pred EEEecCCceEEEEEEECC
Q 014165 39 IGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~~ 56 (429)
+|||+|+..+.+|+.+..
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999988654
No 206
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.51 E-value=33 Score=30.95 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHH---HHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCCCC
Q 014165 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK---VQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGG 417 (429)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~---l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~ 417 (429)
+.+...+.=.+....+.....+.|+|.|..+.... +...|+....+ .+.. -|..+.|.|.|+.|+-.+.-.+
T Consensus 249 dtlal~vamEIagL~~~~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~-k~~~--l~~esaaiG~a~IA~DI~~Gkr 323 (332)
T COG4020 249 DTLALLVAMEIAGLLMVVYGCDGVVLAGSVGGDREPMDVLKRIKSKVFN-KVAV--LPPESAAIGLALIARDIASGKR 323 (332)
T ss_pred HHHHHHHHHHHhhhhceecCCceEEEecccccccchhhHHHHHHHHHHH-HHhh--cCchhhhhhhHHHHHHHHcCcc
Confidence 44444333333333333445678999998888777 55555555422 2222 3555689999999987665544
No 207
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=38.41 E-value=2.6e+02 Score=29.09 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=45.4
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~ 239 (429)
.+.+|++|-......-+.+. ...|++.+..-.|..|+.++-++.... .+-.++++-.|-|.+..
T Consensus 18 V~~vFGvpG~~~~~l~dal~---~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~ 82 (588)
T TIGR01504 18 ITTAFGVPGAAINPFYSALK---AHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDM 82 (588)
T ss_pred CCEEEECCCCCcHHHHHHHh---hcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHH
Confidence 58899999876655544442 234788888899999998888777764 34556667778777754
No 208
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=36.63 E-value=1.8e+02 Score=30.54 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=44.9
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-......-+.|.++-...+++.+..-.|..|+.++.++.....+-.++++-.|-|.+..
T Consensus 34 V~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~ 100 (616)
T PRK07418 34 VKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNL 100 (616)
T ss_pred CCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 5789999976555544444322222368888899999998887777665434456676777777765
No 209
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=36.49 E-value=2.5e+02 Score=29.27 Aligned_cols=65 Identities=18% Similarity=0.080 Sum_probs=45.8
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-.....--+.+.+ ...+++.+..-.|..|+.++-++.....+-.++++-.|-|.+..
T Consensus 18 V~~vFGvpG~~~~~l~dal~~--~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 82 (597)
T PRK08273 18 VRRVFGYPGDGINGLLGALGR--ADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHL 82 (597)
T ss_pred CCEEEEeCCCchHHHHHHHHh--ccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 578999997765544333322 12468999999999998887777766434567777778888865
No 210
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=36.15 E-value=71 Score=30.79 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=21.5
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEE
Q 014165 227 ILVFDLGGGTFDVSILTIDNGVFEVL 252 (429)
Q Consensus 227 ~lvvDiG~~ttd~~v~~~~~~~~~~~ 252 (429)
+|+++.|+++|.+++++.....++..
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~ 27 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEET 27 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeee
Confidence 79999999999999999876655443
No 211
>PLN03170 chalcone synthase; Provisional
Probab=35.83 E-value=2.6e+02 Score=27.48 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CcHHHHHHHHhhcC
Q 014165 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (429)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s-~~~~l~~~l~~~~~ 387 (429)
...+--.+..+++|++.+....+|++|+++-... ..|.+.-.|.+.++
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3344445667889999999888999877655433 69999999999994
No 212
>PLN02192 3-ketoacyl-CoA synthase
Probab=34.67 E-value=1.7e+02 Score=29.77 Aligned_cols=55 Identities=7% Similarity=0.231 Sum_probs=42.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcC-CCCcHHHHHHHHhhcC
Q 014165 333 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGG-STRIPKVQQLLKDYFD 387 (429)
Q Consensus 333 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG-~s~~~~l~~~l~~~~~ 387 (429)
.|++..+....-+.+.+++++++++.+..+|+.|++... ....|.+..+|.++++
T Consensus 168 ~~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 168 CMAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 355555666666788889999999999999998876533 3457999999999993
No 213
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=34.41 E-value=1.7e+02 Score=30.30 Aligned_cols=63 Identities=11% Similarity=0.005 Sum_probs=44.8
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+.+|++|-.. ...+.+++...+++.+....|..|+.++-++.....+-.++++-.|-|.+..
T Consensus 25 V~~vFGvpG~~----~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 25 IDTIYGVVGIP----ITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCEEEeCCCcc----hHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 57899999742 1224455556789999999999999887666655434457777778888765
No 214
>PRK07586 hypothetical protein; Validated
Probab=34.29 E-value=1.9e+02 Score=29.46 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=45.1
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHH-cCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGII-AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~-ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-......- +++.. .+++.+....|..|+.++-++......-.++++-.|-|.+..
T Consensus 16 v~~vFG~pG~~~~~l~----dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 79 (514)
T PRK07586 16 VDVCFANPGTSEMHFV----AALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANG 79 (514)
T ss_pred CCEEEECCCCchHHHH----HHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHH
Confidence 5789999976554433 33333 489999999999999888777766433456778888887764
No 215
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=33.73 E-value=53 Score=28.86 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.5
Q ss_pred EEEEecCCceEEEEEEECCeE
Q 014165 38 VIGIDLGTTYSCVGVYKNGHV 58 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~~ 58 (429)
++-||+|+|+++.++++++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999998854
No 216
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=33.64 E-value=3.1e+02 Score=28.45 Aligned_cols=63 Identities=21% Similarity=0.110 Sum_probs=45.5
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-......- +++...+++.+....|..|+.++.++.....+-.++++-.|-|.+..
T Consensus 16 v~~vFg~pG~~~~~l~----~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 78 (586)
T PRK06276 16 VKIIFGYPGGALLPFY----DALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNL 78 (586)
T ss_pred CCEEEECCCcchHHHH----HHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 5789999976554443 33344689999999999999888877766444567777778777765
No 217
>PF13941 MutL: MutL protein
Probab=33.06 E-value=1.4e+02 Score=29.97 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=31.8
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEecCCCC-CchHHHHHHHHHHHH
Q 014165 227 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH-LGGEDFDQRVMEYFI 274 (429)
Q Consensus 227 ~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~-~Gg~~id~~l~~~l~ 274 (429)
+|++|||+.+|.++++.......+.+....... +.-.++...+.+.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~~ 50 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNALE 50 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHHH
Confidence 689999999999999995555555554433222 222477777766553
No 218
>PLN03173 chalcone synthase; Provisional
Probab=32.80 E-value=3.5e+02 Score=26.52 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=40.3
Q ss_pred cHHHHHHHhHHHH-HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CcHHHHHHHHhhcC
Q 014165 330 TRARFEELNNDLF-RKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (429)
Q Consensus 330 ~~~~~~~~~~~~~-~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s-~~~~l~~~l~~~~~ 387 (429)
+-++-.+++.... +--.+.++++|++.+.+..+|++|+++.-.. ..|.+.-.|.+.++
T Consensus 90 ~~~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 90 SLDARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 3344444444433 3344557889999999888999987765433 58999999999994
No 219
>PRK00976 hypothetical protein; Provisional
Probab=32.76 E-value=56 Score=30.97 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=18.7
Q ss_pred CcEEEEecCCceEEEEEEECCeE
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHV 58 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~ 58 (429)
++.||||-|||.++.+..+++..
T Consensus 1 ~~~~g~dhgt~~~~~~~~~~~~~ 23 (326)
T PRK00976 1 MMFVGIDHGTTGIRFAIIEGGKK 23 (326)
T ss_pred CeEEeecCCCccEEEEEEcCCce
Confidence 36899999999999998855443
No 220
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=32.71 E-value=2.1e+02 Score=25.49 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhh
Q 014165 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (429)
Q Consensus 347 ~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~ 412 (429)
..+.+.+++.+ .+.|+ .|+.+ +..+.+.|++.| +.+|+......-..+.|++.+....
T Consensus 164 ~~~~~a~~edg-----AeaIi-LGCAG-ms~la~~Lq~~~-gvPVIDgv~Aav~~a~~L~~~~~~t 221 (230)
T COG4126 164 IEAAEALKEDG-----AEAII-LGCAG-MSDLADQLQKAF-GVPVIDGVAAAVKLAEGLLGMGLST 221 (230)
T ss_pred HHHHHHhhhcC-----CCEEE-EcCcc-HHHHHHHHHHHh-CCCcccchHHHHHHHHHHHhhchhh
Confidence 44445555433 33344 44433 446799999999 7888754444445566665555443
No 221
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.55 E-value=4.1e+02 Score=27.49 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=44.1
Q ss_pred cceEEccCCCCCHHHHHHHHHHHH-HcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGI-IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~-~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-...... .+++. ..|++.+....|..|+.++.++.....+-.++++-.|-|.+..
T Consensus 19 v~~vFgvpG~~~~~l----~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 19 VKHIFGYPGGSVLDI----YDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred CCEEEEcCCcchHHH----HHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 578999997554333 33333 3478999999999999888777765434556677778777765
No 222
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.37 E-value=1.8e+02 Score=29.99 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=46.4
Q ss_pred ccceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 172 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 172 ~~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
..+.+|++|-.-.-. +.+++...+++.+..-.|-.|+.++-++.....+-.++++-.|=|.|..
T Consensus 16 GV~~VFGiPG~~i~~----~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~ 79 (550)
T COG0028 16 GVDTVFGIPGGSILP----LYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL 79 (550)
T ss_pred CCcEEEeCCCccHHH----HHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 468899999644333 4555555599999999999998877766665434467778888888876
No 223
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=32.13 E-value=1.5e+02 Score=19.98 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=24.4
Q ss_pred ceEEccCCCCCHHHHHHHHHHHHHcCCcee
Q 014165 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVA 203 (429)
Q Consensus 174 ~~~itvP~~~~~~~r~~l~~a~~~ag~~~~ 203 (429)
.-.++.|. .++.+|..+.+.|...|+...
T Consensus 16 ~~~~~fpp-m~~~~R~~vH~lA~~~~L~S~ 44 (58)
T cd02646 16 RDSLSFPP-MDKHGRKTIHKLANCYNLKSK 44 (58)
T ss_pred CceEecCC-CCHHHHHHHHHHHHHcCCccc
Confidence 45668897 899999999999999998753
No 224
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=31.77 E-value=89 Score=28.79 Aligned_cols=54 Identities=31% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHh----hcC----CCCCCCCC--CchhHHHhHHHHHHHhhcC
Q 014165 361 NQIDEIVLVGGSTRIPKVQQLLKD----YFD----GKEPNKGV--NPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~~~l~~~l~~----~~~----~~~v~~~~--~p~~avA~Ga~l~a~~~~~ 414 (429)
..++.|+|+|-.+++|-+-..+++ .|. +..++... --..-.|.||++.|.-+++
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 346789999999998766544444 442 22333322 1123478888888866654
No 225
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=31.74 E-value=45 Score=28.52 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=16.1
Q ss_pred EEEecCCceEEEEEEECC
Q 014165 39 IGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~~ 56 (429)
||||.|.|+|-+.+..++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 899999999998887766
No 226
>PLN00415 3-ketoacyl-CoA synthase
Probab=31.39 E-value=2e+02 Score=28.88 Aligned_cols=47 Identities=9% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CcHHHHHHHHhhcC
Q 014165 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (429)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s-~~~~l~~~l~~~~~ 387 (429)
.-.-+...+++++++.+.+..+|+.|++++.+- ..|.+...+.++++
T Consensus 134 ~em~i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LG 181 (466)
T PLN00415 134 SELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYK 181 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhC
Confidence 334466778888999999988999888665432 57999999999993
No 227
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=31.05 E-value=45 Score=33.64 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=18.5
Q ss_pred CCcEEEEecCCceEEEEEEEC
Q 014165 35 LGTVIGIDLGTTYSCVGVYKN 55 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~ 55 (429)
+.++|||||||.+-++++.+-
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~ 22 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDC 22 (544)
T ss_pred ccEEEEEeecCCceeEEEEEc
Confidence 468999999999999998763
No 228
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=30.88 E-value=1.4e+02 Score=29.46 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=21.8
Q ss_pred CccEEEEEEeCCCceEEEEEEEeC
Q 014165 223 GEKNILVFDLGGGTFDVSILTIDN 246 (429)
Q Consensus 223 ~~~~~lvvDiG~~ttd~~v~~~~~ 246 (429)
....+|++|+||....++.+++.+
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g 96 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGG 96 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCC
Confidence 667899999999999999999974
No 229
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=30.60 E-value=26 Score=35.15 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=15.0
Q ss_pred EEEecCCceEEEEEEEC
Q 014165 39 IGIDLGTTYSCVGVYKN 55 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~ 55 (429)
+|||+||+++|+++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998764
No 230
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=30.41 E-value=29 Score=34.97 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.3
Q ss_pred EEEecCCceEEEEEEEC
Q 014165 39 IGIDLGTTYSCVGVYKN 55 (429)
Q Consensus 39 iGID~Gt~~t~va~~~~ 55 (429)
||||+||+++++++.+.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999998874
No 231
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.16 E-value=3.6e+02 Score=28.01 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.4
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+.+|++|-......-+.+. +..+++.+....|..|+.++-++.....+-.++++-.|-|.+..
T Consensus 36 V~~vFgvpG~~~~~l~dal~---~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~ 99 (587)
T PRK06965 36 VEFIWGYPGGAVLYIYDELY---KQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTNA 99 (587)
T ss_pred CCEEEecCCcchHHHHHHHh---hcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 57899999765544433332 22478989999999999888877766444556777778777765
No 232
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=29.98 E-value=1.3e+02 Score=27.93 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHH
Q 014165 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 362 ~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a 409 (429)
....|.++||++. .+.+.+...| +.++... |...|+..|+-.+-
T Consensus 49 ~~~~i~~TGgGa~--k~~~~~~~~~-~v~~~k~-dE~~a~~~g~~~ll 92 (279)
T TIGR00555 49 RITTLCATGGGAF--KFAELIYESA-GIQLHKF-DEFDALIQGLNYLL 92 (279)
T ss_pred CceEEEEECCcHH--HHHHHhcccc-CCcccch-hHHHHHHHHHHHHh
Confidence 3567999999988 8888888887 4444333 66778888887764
No 233
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.79 E-value=48 Score=30.20 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=31.3
Q ss_pred EEEEEEeCCCceEEEEEEEeCC-eEEEE---------------------EecCCCCCchHHHHHHHHHHH
Q 014165 226 NILVFDLGGGTFDVSILTIDNG-VFEVL---------------------STNGDTHLGGEDFDQRVMEYF 273 (429)
Q Consensus 226 ~~lvvDiG~~ttd~~v~~~~~~-~~~~~---------------------~~~~~~~~Gg~~id~~l~~~l 273 (429)
+++.+|+|.||+|+..+.-... ..... ..-.+...||--++..+.+++
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G~~MGGGp~travrrhl 71 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIGVPMGGGPTTRAVRRHL 71 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEeeecCCChhhHHHHHHH
Confidence 5789999999999987764210 00000 012235678888888888877
No 234
>PRK13321 pantothenate kinase; Reviewed
Probab=29.72 E-value=2.3e+02 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=15.6
Q ss_pred EEEEEeCCCceEEEEEE
Q 014165 227 ILVFDLGGGTFDVSILT 243 (429)
Q Consensus 227 ~lvvDiG~~ttd~~v~~ 243 (429)
++.+|+|++++.+.+++
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 47899999999999998
No 235
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=29.56 E-value=2.4e+02 Score=26.41 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=37.9
Q ss_pred ccEEEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHH
Q 014165 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK 279 (429)
Q Consensus 224 ~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~ 279 (429)
...++-+|+|+.++.++++...+..+..........-....+-+.+.+.+.+.+..
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 60 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQ 60 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHHh
Confidence 45789999999999999999877654444334333333356667777776655543
No 236
>PLN02920 pantothenate kinase 1
Probab=28.54 E-value=1.4e+02 Score=29.21 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHh
Q 014165 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
..+..|.++||+|. .+.+.+++.+ +.++... |...++..|+...-..
T Consensus 95 ~~~~~i~~TGGGA~--k~~~~~~~~~-~i~~~k~-DEm~~li~Gl~fLl~~ 141 (398)
T PLN02920 95 HDKNFIKATGGGAY--KFADLFKEKL-GISLDKE-DEMDCLVTGANFLLKA 141 (398)
T ss_pred CCceEEEEECCcHH--HHHHHHHhhh-CCCceee-cHHHHHHHHHHHHHhh
Confidence 34678999999988 8999999888 4554333 7788999999887543
No 237
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=28.40 E-value=64 Score=27.89 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=32.7
Q ss_pred CCeEEEEcCCC---CcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 363 IDEIVLVGGST---RIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 363 ~~~V~l~GG~s---~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
.+.|+++||-+ ..+.+.+.|++ + ...-|...+..|+.+++..+.+.
T Consensus 44 ~d~iIi~gGp~~~~~~~~~~~~i~~-~------~~~~PiLGIClG~Qlla~~~Gg~ 92 (190)
T PRK06895 44 FSHILISPGPDVPRAYPQLFAMLER-Y------HQHKSILGVCLGHQTLCEFFGGE 92 (190)
T ss_pred CCEEEECCCCCChHHhhHHHHHHHH-h------cCCCCEEEEcHHHHHHHHHhCCe
Confidence 56799999877 44555566654 3 12258889999999999887654
No 238
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=28.20 E-value=49 Score=35.81 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=17.9
Q ss_pred cEEEEecCCceEEEEEEECC
Q 014165 37 TVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~~ 56 (429)
++||+|+||+++.-|+.+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 68999999999999998755
No 239
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.86 E-value=5.2e+02 Score=26.74 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=45.2
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHH-cCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGII-AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~-ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-...... .+++.. .|++.+..-.|..|+.++.++.....+-.++++-.|-|.+..
T Consensus 19 v~~vFgvpG~~~~~l----~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 19 VKQVFGYPGGAVLDI----YDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred CCEEEEccCcchHHH----HHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 578999997544333 333333 478989999999999888877765444567777888888865
No 240
>PLN03172 chalcone synthase family protein; Provisional
Probab=27.77 E-value=5.2e+02 Score=25.32 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CcHHHHHHHHhhcC
Q 014165 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (429)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s-~~~~l~~~l~~~~~ 387 (429)
+...+--.+..+++|++.+....+|++|+++-... ..|.+.-.|.+.++
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33334445567889999998888999987655433 69999999999994
No 241
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.25 E-value=3.3e+02 Score=26.24 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=35.4
Q ss_pred CeEEEEcCCCCc----HHHHHHHHhhc--C-CCCCCCCCCchhHHHhHHHHHHHhhcCCCCCCCcceE
Q 014165 364 DEIVLVGGSTRI----PKVQQLLKDYF--D-GKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKGMI 424 (429)
Q Consensus 364 ~~V~l~GG~s~~----~~l~~~l~~~~--~-~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~~~~~~~ 424 (429)
..|=++|..+-. .++-+.|.+.+ . ..++... +...|+||+++|.+|...+. ++.++
T Consensus 364 t~iGiTGRAgITG~KP~lIle~l~~~~~~d~~d~vVFv---dDGLA~GAavMaRCMNslGt--Pk~Pi 426 (445)
T TIGR03285 364 TTLGITGRAGITGYKPELILEYLKNSFLWDKEENVVFV---DDGLALGAAVMARCMNSLGT--PQNPL 426 (445)
T ss_pred CeeeeeeccccCCCChHHHHHHHHhccccCCCCcEEEe---ccchhhhHHHHHHHHhccCC--CCCCC
Confidence 567778876544 34555555543 1 1223332 34699999999999998887 44443
No 242
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.20 E-value=2.9e+02 Score=26.72 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=34.8
Q ss_pred CeEEEEcCCCCc----HHHHHHHHhh--c--CCCCCCCCCCchhHHHhHHHHHHHhhcCCCCCCCcceE
Q 014165 364 DEIVLVGGSTRI----PKVQQLLKDY--F--DGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKGMI 424 (429)
Q Consensus 364 ~~V~l~GG~s~~----~~l~~~l~~~--~--~~~~v~~~~~p~~avA~Ga~l~a~~~~~~~~~~~~~~~ 424 (429)
..|=++|..+-. .++-+.|.+. + +..++... +...|+||+++|.+|...++ ++.++
T Consensus 367 t~iGiTGRAgItG~KP~lIle~l~~~~~~d~~~~~vvFv---dDGLArGAavMaRCMNslGt--P~nPi 430 (448)
T PF09887_consen 367 TAIGITGRAGITGKKPELILEYLEELGIYDDPFDNVVFV---DDGLARGAAVMARCMNSLGT--PKNPI 430 (448)
T ss_pred ceeeeeccccccCCChHHHHHHHHhcccccCcccceEEe---ccchhhhHHHHHHHHHhcCC--CCCCC
Confidence 457778876544 3445555544 1 11233333 34699999999999998887 44443
No 243
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=27.15 E-value=1.6e+02 Score=25.19 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=26.0
Q ss_pred EEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHH
Q 014165 228 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (429)
Q Consensus 228 lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~ 274 (429)
+=+|+||..||+.++.-....+......+. -.++.+.+.+.+.
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt----~~d~~~gi~~al~ 44 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT----PDDPAEGILEALD 44 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC----CcCHHHHHHHHHH
Confidence 358999999999999876444433333332 2344444544443
No 244
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=26.85 E-value=82 Score=29.87 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=31.7
Q ss_pred EEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHH
Q 014165 228 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (429)
Q Consensus 228 lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~ 275 (429)
|+.|+||..+.++++.......+.........-.=.++++.+.+++.+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~l~~ 48 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPSADFPSFEDALADYLAE 48 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEGCCCCHHHHHHHHHHHH
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEecCCcCCHHHHHHHHHHh
Confidence 688999999999999987665222222222222234588888888863
No 245
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=26.13 E-value=75 Score=26.32 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=16.2
Q ss_pred EEEEecCCceEEEEEEEC--CeEEEE
Q 014165 38 VIGIDLGTTYSCVGVYKN--GHVEII 61 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~--~~~~~i 61 (429)
++|||-|++++..++.+. +....+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 689999999999998653 344443
No 246
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=25.95 E-value=5.7e+02 Score=26.30 Aligned_cols=64 Identities=25% Similarity=0.124 Sum_probs=45.9
Q ss_pred ccceEEccCCCCCHHHHHHHHHHHHHc-CCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 172 IKDAVVTVPAYFNDAQRQATKDAGIIA-GLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 172 ~~~~~itvP~~~~~~~r~~l~~a~~~a-g~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
..+-+|++|-.....- .+++... +++.+....|..|+.++-++.....+-.++++-.|-|.+..
T Consensus 22 GV~~vFg~pG~~~~~l----~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 86 (557)
T PRK08199 22 GVERVFCVPGESYLAV----LDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNA 86 (557)
T ss_pred CCCEEEeCCCcchhHH----HHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH
Confidence 3578999997655443 3333333 58889999999999888877776544567777778888765
No 247
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=25.93 E-value=1.9e+02 Score=26.60 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHHHHHHHHhhc
Q 014165 342 FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (429)
Q Consensus 342 ~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~l~~~l~~~~ 386 (429)
++.+...+...++. ..+..++++||-+...+|++.+++..
T Consensus 206 ~~~l~~~~~~a~~~-----~~~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 206 ADHLAKKAPRALEK-----PRAKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp HHHHHHHHHHHHHH-----HTCSEEEEESGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----hcccccchHHHHHHHHHHHHHHHHHH
Confidence 34444445555554 34778999999999999999998654
No 248
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=25.93 E-value=7.5e+02 Score=25.56 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=46.7
Q ss_pred ccceEEccCCCCCHHHHHHHHHHHHHcC---CceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 172 IKDAVVTVPAYFNDAQRQATKDAGIIAG---LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 172 ~~~~~itvP~~~~~~~r~~l~~a~~~ag---~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
..+.+|++|-......-+.+.+ ....| ++.+..-.|..|+.++-++.....+-.++++-.|-|.+..
T Consensus 21 GV~~iFgvpG~~~~~l~dal~~-~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~ 90 (569)
T PRK08327 21 GVDYIFINSGTDYPPIIEAKAR-ARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDVGTANA 90 (569)
T ss_pred CCCEEEEcCCCCcHHHHHHHHh-hhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHH
Confidence 3588999998766555555432 12233 7888889999999887777766444466777778888765
No 249
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.88 E-value=72 Score=27.34 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCc--------HHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcC
Q 014165 361 NQIDEIVLVGGSTRI--------PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~--------~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~ 414 (429)
..++.|+++||.... +.+.+.|+.... ..-|..++..|..+++..+.+
T Consensus 45 ~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~------~~~pilgiC~G~q~l~~~lGG 100 (188)
T cd01741 45 DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA------AGKPVLGICLGHQLLARALGG 100 (188)
T ss_pred ccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH------CCCCEEEECccHHHHHHHhCC
Confidence 458899999997654 234455555542 114788899999998887755
No 250
>PLN02932 3-ketoacyl-CoA synthase
Probab=25.85 E-value=3.5e+02 Score=27.33 Aligned_cols=56 Identities=14% Similarity=0.298 Sum_probs=43.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCCCcHHHHHHHHhhcC
Q 014165 332 ARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (429)
Q Consensus 332 ~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l-~GG~s~~~~l~~~l~~~~~ 387 (429)
..++...+....-..+.+++++++.+.++.+|+.|++ +..+...|.+..+|.++++
T Consensus 139 ~~~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 139 QNLAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 3455665666666778888999999999889998765 4445578999999999993
No 251
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=25.75 E-value=4.1e+02 Score=27.26 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=46.0
Q ss_pred ccceEEccCCCCCHHHHHHHHHHHHHcC-CceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 172 IKDAVVTVPAYFNDAQRQATKDAGIIAG-LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 172 ~~~~~itvP~~~~~~~r~~l~~a~~~ag-~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
..+-+|++|-......- +++...+ ++.+..-.|..|+.++-++.....+-.++++-.|-|.+..
T Consensus 14 Gv~~vFGvpG~~~~~l~----~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 78 (535)
T TIGR03394 14 GAQEMFGIPGDFALPFF----KVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNM 78 (535)
T ss_pred CCCEEEECCCcccHHHH----HHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhh
Confidence 36889999977665543 3444565 8888899999888877766665444567777788888765
No 252
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=25.67 E-value=58 Score=31.78 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=17.3
Q ss_pred ccEEEEEEeCCCceEEEEEE
Q 014165 224 EKNILVFDLGGGTFDVSILT 243 (429)
Q Consensus 224 ~~~~lvvDiG~~ttd~~v~~ 243 (429)
...+.++|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 56799999999999998655
No 253
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.62 E-value=34 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.6
Q ss_pred hhhccCCcEEEEecCCceEEEEEEECCe
Q 014165 30 EEATKLGTVIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 30 ~~~~~~~~~iGID~Gt~~t~va~~~~~~ 57 (429)
.+..+...++|||+|..+..++...++.
T Consensus 118 ~~~~~~~~~vgVDlGi~~~a~~~~~~~~ 145 (227)
T PF01385_consen 118 PPPPDTEKVVGVDLGIKNLATVSSGDGT 145 (227)
T ss_pred ccccccceeeeeccccceeecccccccc
Confidence 4556677899999999999877665543
No 254
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.34 E-value=1.7e+02 Score=30.79 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=35.9
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHhhcCCC--CCCCCC---CchhHHHhHHHHHHH
Q 014165 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGK--EPNKGV---NPDEAVAYGAAVQGG 410 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~~~l~~~l~~~~~~~--~v~~~~---~p~~avA~Ga~l~a~ 410 (429)
..++.|+++||-....+|.+.+.+.+.+. ++..+. .-+.+++.|=++.++
T Consensus 692 ~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~~ 746 (750)
T COG0068 692 YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAAA 746 (750)
T ss_pred cCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHHH
Confidence 34788999999999999999998888532 222221 225678888887773
No 255
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=25.30 E-value=4e+02 Score=22.20 Aligned_cols=108 Identities=21% Similarity=0.286 Sum_probs=55.2
Q ss_pred EecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCC-----------cccceEEccCC-CCCHH-HHHHHH
Q 014165 126 IVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGK-----------KIKDAVVTVPA-YFNDA-QRQATK 192 (429)
Q Consensus 126 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----------~~~~~~itvP~-~~~~~-~r~~l~ 192 (429)
+.+-+|+......+ ... .++++++..+.+.+.+...+.-.. .....++..|. .|... -.+.|+
T Consensus 13 l~d~~g~ii~~~~~---~~~-~~~~~~~~~l~~~i~~~~~~~~~~gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~ 88 (179)
T PF00480_consen 13 LVDLDGEIIYSESI---PTP-TSPEELLDALAELIERLLADYGRSGIGISVPGIVDSEKGRIISSPNPGWENIPLKEELE 88 (179)
T ss_dssp EEETTSCEEEEEEE---EHH-SSHHHHHHHHHHHHHHHHHHHTCEEEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHH
T ss_pred EECCCCCEEEEEEE---ECC-CCHHHHHHHHHHHHHHHHhhcccccEEEeccccCcCCCCeEEecCCCCcccCCHHHHhh
Confidence 34566666555444 111 456666666665555544443211 00113333332 23321 133444
Q ss_pred HHHHHcCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceEEEEE
Q 014165 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSIL 242 (429)
Q Consensus 193 ~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd~~v~ 242 (429)
+. .++ ++.+..+..|++++....... ....++.+.+|.| .-.+++
T Consensus 89 ~~---~~~-pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 89 ER---FGV-PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HH---HTS-EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred cc---cce-EEEEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 43 355 467888999888877553332 4467888888876 333333
No 256
>PRK13318 pantothenate kinase; Reviewed
Probab=25.08 E-value=2.8e+02 Score=25.19 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.6
Q ss_pred EEEEEeCCCceEEEEEE
Q 014165 227 ILVFDLGGGTFDVSILT 243 (429)
Q Consensus 227 ~lvvDiG~~ttd~~v~~ 243 (429)
++.+|+|+..+.+.+++
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 47899999999999998
No 257
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=25.02 E-value=6.3e+02 Score=26.24 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=47.0
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-......- +++...|++.+..-.|..|+.++.++.....+-.++++-.|-|.+..
T Consensus 21 V~~vFGvpG~~~~~l~----dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 83 (588)
T PRK07525 21 ITHAFGIIGSAFMDAS----DLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNF 83 (588)
T ss_pred CCEEEEeCCCchHHHH----HHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 5789999976555443 33445689999999999999888877766444567788888888765
No 258
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=24.49 E-value=66 Score=32.05 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.4
Q ss_pred CCcEEEEecCCceEEEEEEECC
Q 014165 35 LGTVIGIDLGTTYSCVGVYKNG 56 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~~ 56 (429)
+++++.||-|||++++.+++.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~ 25 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDED 25 (499)
T ss_pred ccEEEEEecCCcceeEEEECCC
Confidence 5799999999999999988754
No 259
>PRK07157 acetate kinase; Provisional
Probab=24.41 E-value=2.5e+02 Score=27.60 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHH-HHHHHHhhcC
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK-VQQLLKDYFD 387 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~-l~~~l~~~~~ 387 (429)
-+++-++.++...|-......+ ..+|.|+++||-+.... +++.+.+.+.
T Consensus 297 lA~d~f~yri~k~Ig~~~a~L~---G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 297 FALDLYAQKIVDYLANYINKIG---KKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 4445555555555554444432 24899999999887776 9999999885
No 260
>PTZ00288 glucokinase 1; Provisional
Probab=23.92 E-value=70 Score=31.48 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.3
Q ss_pred CCcEEEEecCCceEEEEEEEC
Q 014165 35 LGTVIGIDLGTTYSCVGVYKN 55 (429)
Q Consensus 35 ~~~~iGID~Gt~~t~va~~~~ 55 (429)
..+++|+|+|.|++++++.+.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 346999999999999999864
No 261
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=23.91 E-value=60 Score=31.11 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=36.1
Q ss_pred CCCCeEEEEcCCCCcHHHHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHh
Q 014165 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (429)
Q Consensus 361 ~~~~~V~l~GG~s~~~~l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~ 411 (429)
.....|..+||+|. -+.+.+++.+ +.++... |...++..|+-.+-..
T Consensus 82 ~~~~~I~aTGGGA~--Ky~~~~~~~L-gv~v~K~-DEm~clI~Gl~fLl~~ 128 (341)
T PF03630_consen 82 QKITKICATGGGAF--KYADLFKEKL-GVEVQKE-DEMECLIKGLNFLLKN 128 (341)
T ss_dssp GCSSEEEEESTTHH--HHHCHHHCTS-TSEEEE---HHHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCcHH--HHHHHHHHhc-CCCeeEe-hHHHHHHhhHHHHHhc
Confidence 34678999999986 6888899988 6666665 6678999999888774
No 262
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=23.30 E-value=6.9e+02 Score=24.22 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q 014165 263 EDFDQRVMEYFIKLI 277 (429)
Q Consensus 263 ~~id~~l~~~l~~~~ 277 (429)
+.||+.|...+.+++
T Consensus 13 D~iD~~iv~Ll~~R~ 27 (374)
T PRK11199 13 DEVDKQLLELLAKRL 27 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888888887654
No 263
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=23.09 E-value=87 Score=25.38 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.4
Q ss_pred EEEEecCCceEEEEEEECCe
Q 014165 38 VIGIDLGTTYSCVGVYKNGH 57 (429)
Q Consensus 38 ~iGID~Gt~~t~va~~~~~~ 57 (429)
+||||+|-....+++...++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 58999999999999887665
No 264
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.73 E-value=3.4e+02 Score=25.93 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=61.8
Q ss_pred ceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHHHcCCcccceEEccCCCCCHHHHHHHHHHHHHcCCceee--eccchh
Q 014165 133 PYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVAR--IINEPT 210 (429)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~--~v~E~~ 210 (429)
..+-+.+ ||..+..+.-.+...|. ....+++++==.+|..-+.+.|+.-+++.|.+.+. -=.+|.
T Consensus 141 Vil~vGV-NG~GKTTTIaKLA~~l~------------~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA 207 (340)
T COG0552 141 VILFVGV-NGVGKTTTIAKLAKYLK------------QQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA 207 (340)
T ss_pred EEEEEec-CCCchHhHHHHHHHHHH------------HCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH
Confidence 4455666 88777766655444333 13467888888899999999999999999988766 345677
Q ss_pred HHHHHhhhccCCCccEEEEEEeCC
Q 014165 211 AAAIAYGLDKKGGEKNILVFDLGG 234 (429)
Q Consensus 211 Aaa~~~~~~~~~~~~~~lvvDiG~ 234 (429)
|+++.....-..++..+++||--|
T Consensus 208 aVafDAi~~Akar~~DvvliDTAG 231 (340)
T COG0552 208 AVAFDAIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcc
Confidence 777666555444666677776443
No 265
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=22.60 E-value=3.7e+02 Score=28.16 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=44.7
Q ss_pred cceEEccCCCCCHHHHHHHHHHHH-HcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGI-IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~-~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+.+|++|-..... |.+++. ..+++.+..-.|..|+.++.++......-.++++-.|-|.+..
T Consensus 46 V~~vFgipG~~~~~----l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 109 (612)
T PRK07789 46 VDVVFGIPGGAILP----VYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNL 109 (612)
T ss_pred CCEEEEcCCcchHH----HHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 57899999754333 333333 3479999999999999887777665444557778888888765
No 266
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=22.30 E-value=2.2e+02 Score=27.37 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCCCc-HHHHHHHH---hhc--CCCCCCCCCCchhHHHhHHHHHH
Q 014165 362 QIDEIVLVGGSTRI-PKVQQLLK---DYF--DGKEPNKGVNPDEAVAYGAAVQG 409 (429)
Q Consensus 362 ~~~~V~l~GG~s~~-~~l~~~l~---~~~--~~~~v~~~~~p~~avA~Ga~l~a 409 (429)
.++.|+++|..-+. |..++.|. +.+ ++.+.....+..+.-|.||.+..
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 47889999998764 67788887 445 24556677799999999998753
No 267
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=22.26 E-value=3.3e+02 Score=27.90 Aligned_cols=64 Identities=22% Similarity=0.160 Sum_probs=44.7
Q ss_pred ccceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 172 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 172 ~~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
..+-+|++|-.....--+.+. +..+++.+..-.|..|+.++-++..... ..++++-.|-|.+..
T Consensus 15 Gv~~vFG~pG~~~~~l~dal~---~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~ 78 (539)
T TIGR03393 15 GIDHLFGVPGDYNLQFLDHVI---DSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSA 78 (539)
T ss_pred CCCEEEECCCCchHHHHHHHh---hCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHH
Confidence 358899999765544333332 2358888999999999988887776643 356677778887654
No 268
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=22.20 E-value=4.5e+02 Score=21.70 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=71.9
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHc
Q 014165 227 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRAL 306 (429)
Q Consensus 227 ~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~~~~~Gg~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l 306 (429)
+|=+|-|-..|=+++++..++..+.+....-........-+++ ..+.+..+++...+
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~~rl-----------------------~~I~~~l~~~i~~~ 58 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSRL-----------------------KTIYDGLNEVIDQF 58 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHHHHH-----------------------HHHHHHHHHHHHHh
Confidence 6789999999999999887766555443321111122222222 12224444444444
Q ss_pred cCCceEEEEEecccCCcceeeeecHHHHHHHhHHHHHHHHHHHHHHHHHcCCC-----cCCCCeEEEEcC-CCCcHHHHH
Q 014165 307 SSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLE-----KNQIDEIVLVGG-STRIPKVQQ 380 (429)
Q Consensus 307 ~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-----~~~~~~V~l~GG-~s~~~~l~~ 380 (429)
... .+.++..+-+.. .+..+ .+.+....+...+...+.. +..+.. .++|- .+.=.-+..
T Consensus 59 ~Pd---~vaiE~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk-~~tG~G~A~KeqV~~ 123 (154)
T cd00529 59 QPD---VVAIERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKK-AVTGYGKADKDQVQH 123 (154)
T ss_pred CCC---EEEEEEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEE-EEECCCCCCHHHHHH
Confidence 321 333332111110 11211 2333455555666665543 333444 33553 344456788
Q ss_pred HHHhhcCCCCCCCCCCchhHHHhHHHHH
Q 014165 381 LLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (429)
Q Consensus 381 ~l~~~~~~~~v~~~~~p~~avA~Ga~l~ 408 (429)
++++.++-.......|...|.|.+.+-.
T Consensus 124 mv~~~l~~~~~~~~~d~aDAlaiA~~~~ 151 (154)
T cd00529 124 MVKRLLNLSEIPKPDDAADALAVAITHA 151 (154)
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999984222224556677777776543
No 269
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=21.57 E-value=6.6e+02 Score=25.63 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=44.2
Q ss_pred cceEEccCCCCCHHHHHHHHHHHHHcCCceeeeccchhHHHHHhhhccCCCccEEEEEEeCCCceEE
Q 014165 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (429)
Q Consensus 173 ~~~~itvP~~~~~~~r~~l~~a~~~ag~~~~~~v~E~~Aaa~~~~~~~~~~~~~~lvvDiG~~ttd~ 239 (429)
.+-+|++|-.....--+.+ . .+++.+....|..|+.++-++......-.++++-.|-|.+..
T Consensus 27 V~~vFgiPG~~~~~l~dal----~-~~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~ 88 (530)
T PRK07092 27 ITTVFGNPGSTELPFLRDF----P-DDFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNA 88 (530)
T ss_pred CCEEEeCCCCcchHHHHHH----h-hcCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHH
Confidence 5789999977655444443 2 268889999999999888877776444556677777776643
No 270
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=21.44 E-value=1.6e+02 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=16.9
Q ss_pred cEEEEecCCceEEEEEEEC
Q 014165 37 TVIGIDLGTTYSCVGVYKN 55 (429)
Q Consensus 37 ~~iGID~Gt~~t~va~~~~ 55 (429)
.+++||+|+-|...+..+.
T Consensus 2 ii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred eEEEEecCCCceeEEEEEc
Confidence 5899999999999998874
No 271
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=21.41 E-value=93 Score=26.85 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCcHH--------------------HHHHHHhhcCCCCCCCCCCchhHHHhHHHHHHHhhcCC
Q 014165 363 IDEIVLVGGSTRIPK--------------------VQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (429)
Q Consensus 363 ~~~V~l~GG~s~~~~--------------------l~~~l~~~~~~~~v~~~~~p~~avA~Ga~l~a~~~~~~ 415 (429)
+++|+|+||.+..+. ..+.+++.+. ..-|..++..|..+++..+.+.
T Consensus 54 ~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~------~~~PilgiC~G~Q~l~~~~Gg~ 120 (189)
T cd01745 54 LDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALE------RGKPILGICRGMQLLNVALGGT 120 (189)
T ss_pred CCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHH------CCCCEEEEcchHHHHHHHhCCe
Confidence 678999999865442 2444444441 1237788999998888777654
No 272
>PRK12440 acetate kinase; Reviewed
Probab=21.39 E-value=2.9e+02 Score=27.09 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCcHH-HHHHHHhhcC
Q 014165 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK-VQQLLKDYFD 387 (429)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~V~l~GG~s~~~~-l~~~l~~~~~ 387 (429)
.+++-++.++...|-......+ .+|.|+++||-+.... +++.+.+.+.
T Consensus 298 lA~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 298 LAFEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 4445555555555555444432 5999999999887766 9999999885
No 273
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=20.62 E-value=85 Score=28.53 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=26.1
Q ss_pred cCCceeeeccchhHHHHHhhhccCC-CccEEEEEEeCCCceE
Q 014165 198 AGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFD 238 (429)
Q Consensus 198 ag~~~~~~v~E~~Aaa~~~~~~~~~-~~~~~lvvDiG~~ttd 238 (429)
.+++ +.+..+..|++++....... ..++++.+-+|.|-=-
T Consensus 96 ~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG~ 136 (256)
T PRK13311 96 IQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGG 136 (256)
T ss_pred HCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeEE
Confidence 3654 67888888888877544332 3467777777765443
No 274
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=20.61 E-value=4.9e+02 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=21.8
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEecC
Q 014165 227 ILVFDLGGGTFDVSILTIDNGVFEVLSTNG 256 (429)
Q Consensus 227 ~lvvDiG~~ttd~~v~~~~~~~~~~~~~~~ 256 (429)
+|-+|-|...|=+++++..+..++.+....
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~ 30 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGT 30 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCe
Confidence 467899999999999999887776655433
No 275
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=20.16 E-value=7.1e+02 Score=25.33 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=33.6
Q ss_pred ccEEEEEEeCCCceEEEEEEEeCCeEEEEEec-CCCCCchHHHHHHHH
Q 014165 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTN-GDTHLGGEDFDQRVM 270 (429)
Q Consensus 224 ~~~~lvvDiG~~ttd~~v~~~~~~~~~~~~~~-~~~~~Gg~~id~~l~ 270 (429)
..+-+-||+|.++.-..++....+........ ...--||+.+|.+..
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 34567789999999999999877654444333 333469999888763
No 276
>PRK03011 butyrate kinase; Provisional
Probab=20.02 E-value=1e+02 Score=29.79 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.1
Q ss_pred CcEEEEecCCceEEEEEEECCeE
Q 014165 36 GTVIGIDLGTTYSCVGVYKNGHV 58 (429)
Q Consensus 36 ~~~iGID~Gt~~t~va~~~~~~~ 58 (429)
..++.|.-|+|+||+|+++++..
T Consensus 2 ~~il~inpgststk~a~~~~~~~ 24 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKP 24 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCce
Confidence 36899999999999999987754
Done!