Query 014167
Match_columns 429
No_of_seqs 301 out of 1660
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342 Histone deacetylase co 100.0 6E-147 1E-151 1086.8 34.5 422 2-423 4-425 (425)
2 PTZ00063 histone deacetylase; 100.0 2E-119 5E-124 926.3 42.2 386 3-389 2-391 (436)
3 PTZ00346 histone deacetylase; 100.0 2E-101 4E-106 789.8 39.3 376 3-379 18-406 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 2.2E-84 4.8E-89 653.4 32.7 325 5-338 2-335 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 1E-79 2.2E-84 615.2 25.4 298 12-317 1-311 (311)
6 KOG1343 Histone deacetylase co 100.0 2.1E-48 4.6E-53 423.0 22.2 311 22-362 463-786 (797)
7 KOG1344 Predicted histone deac 100.0 7.9E-41 1.7E-45 313.7 13.4 292 3-310 12-311 (324)
8 KOG1343 Histone deacetylase co 100.0 4E-34 8.7E-39 311.7 10.8 312 6-322 30-358 (797)
9 COG3914 Spy Predicted O-linked 85.7 21 0.00046 39.2 14.4 167 142-335 312-507 (620)
10 cd04237 AAK_NAGS-ABP AAK_NAGS- 75.9 6.6 0.00014 39.1 6.3 64 233-304 1-64 (280)
11 TIGR02855 spore_yabG sporulati 72.8 8.1 0.00018 38.6 5.8 58 241-299 144-207 (283)
12 KOG0121 Nuclear cap-binding pr 72.7 2.7 5.9E-05 37.5 2.3 44 138-181 72-122 (153)
13 cd01835 SGNH_hydrolase_like_3 72.3 19 0.00042 32.6 8.1 74 221-295 41-117 (193)
14 cd04502 SGNH_hydrolase_like_7 71.7 12 0.00025 33.5 6.3 68 220-295 25-95 (171)
15 KOG2749 mRNA cleavage and poly 69.3 36 0.00078 35.6 9.7 121 154-315 122-258 (415)
16 PF05582 Peptidase_U57: YabG p 68.5 12 0.00025 37.7 5.9 58 241-299 145-208 (287)
17 cd01836 FeeA_FeeB_like SGNH_hy 66.4 15 0.00033 33.2 6.0 68 220-295 43-112 (191)
18 cd01825 SGNH_hydrolase_peri1 S 65.7 19 0.00041 32.3 6.5 71 220-296 27-103 (189)
19 TIGR01890 N-Ac-Glu-synth amino 64.5 12 0.00027 39.3 5.7 63 234-304 1-63 (429)
20 cd00840 MPP_Mre11_N Mre11 nucl 63.6 36 0.00077 31.4 8.1 59 231-297 23-84 (223)
21 PF02310 B12-binding: B12 bind 62.9 17 0.00036 30.6 5.2 49 242-301 43-91 (121)
22 PRK05279 N-acetylglutamate syn 62.3 25 0.00054 37.1 7.5 65 232-304 7-71 (441)
23 TIGR03018 pepcterm_TyrKin exop 62.1 1E+02 0.0022 28.8 10.8 24 236-259 134-157 (207)
24 TIGR00259 thylakoid_BtpA membr 60.5 64 0.0014 32.0 9.4 87 246-366 167-255 (257)
25 cd01822 Lysophospholipase_L1_l 57.8 49 0.0011 29.2 7.6 66 220-296 39-108 (177)
26 cd02068 radical_SAM_B12_BD B12 56.3 33 0.00072 29.4 6.0 52 239-302 28-79 (127)
27 cd01828 sialate_O-acetylestera 56.1 43 0.00093 29.6 6.9 42 248-295 46-93 (169)
28 cd01443 Cdc25_Acr2p Cdc25 enzy 55.4 61 0.0013 27.0 7.4 67 220-302 42-110 (113)
29 TIGR01007 eps_fam capsular exo 55.1 1.7E+02 0.0036 27.0 11.0 17 160-176 43-59 (204)
30 cd01841 NnaC_like NnaC (CMP-Ne 54.7 47 0.001 29.5 7.0 70 219-295 25-96 (174)
31 cd04501 SGNH_hydrolase_like_4 54.7 50 0.0011 29.5 7.2 65 220-295 34-102 (183)
32 cd01832 SGNH_hydrolase_like_1 54.4 47 0.001 29.7 7.0 57 233-295 51-111 (185)
33 PRK12755 phospho-2-dehydro-3-d 52.4 47 0.001 34.5 7.2 31 148-181 244-276 (353)
34 cd01829 SGNH_hydrolase_peri2 S 51.9 47 0.001 30.2 6.6 21 243-263 52-72 (200)
35 CHL00202 argB acetylglutamate 49.4 57 0.0012 32.5 7.2 64 233-303 6-69 (284)
36 COG1618 Predicted nucleotide k 49.2 56 0.0012 30.6 6.4 59 219-296 79-137 (179)
37 COG0420 SbcD DNA repair exonuc 48.8 68 0.0015 33.1 7.9 59 231-297 22-83 (390)
38 KOG2733 Uncharacterized membra 47.4 50 0.0011 34.6 6.4 45 229-275 116-160 (423)
39 cd01830 XynE_like SGNH_hydrola 46.7 47 0.001 30.7 5.8 50 245-294 69-124 (204)
40 cd01820 PAF_acetylesterase_lik 46.3 30 0.00065 32.3 4.5 44 246-295 85-134 (214)
41 PRK04531 acetylglutamate kinas 46.0 36 0.00077 35.9 5.3 52 244-303 25-80 (398)
42 PF13472 Lipase_GDSL_2: GDSL-l 45.3 17 0.00037 31.3 2.5 72 220-296 33-108 (179)
43 PLN02825 amino-acid N-acetyltr 44.0 55 0.0012 35.7 6.5 63 234-304 1-63 (515)
44 cd01838 Isoamyl_acetate_hydrol 43.8 55 0.0012 29.3 5.7 51 244-295 54-113 (199)
45 cd01844 SGNH_hydrolase_like_6 43.1 52 0.0011 29.5 5.4 49 242-295 49-99 (177)
46 TIGR01969 minD_arch cell divis 42.3 27 0.00058 33.0 3.5 19 159-177 25-43 (251)
47 TIGR01278 DPOR_BchB light-inde 42.2 49 0.0011 35.8 5.8 57 237-303 72-129 (511)
48 PRK14476 nitrogenase molybdenu 41.9 62 0.0014 34.5 6.5 70 237-317 79-154 (455)
49 cd07388 MPP_Tt1561 Thermus the 41.5 1.1E+02 0.0025 29.5 7.7 52 237-297 19-70 (224)
50 cd01833 XynB_like SGNH_hydrola 41.3 71 0.0015 27.7 5.9 39 244-288 34-76 (157)
51 TIGR01285 nifN nitrogenase mol 40.4 88 0.0019 33.1 7.3 70 237-317 78-153 (432)
52 TIGR00034 aroFGH phospho-2-deh 40.3 1.2E+02 0.0026 31.5 7.9 29 150-181 239-269 (344)
53 cd00229 SGNH_hydrolase SGNH_hy 39.9 97 0.0021 26.1 6.4 58 243-300 58-117 (187)
54 PLN02512 acetylglutamate kinas 39.6 92 0.002 31.5 7.0 65 232-303 29-93 (309)
55 PRK13236 nitrogenase reductase 39.5 32 0.00069 34.3 3.7 25 159-184 30-54 (296)
56 TIGR00583 mre11 DNA repair pro 39.0 1.3E+02 0.0028 31.8 8.2 49 231-287 24-72 (405)
57 cd01972 Nitrogenase_VnfE_like 38.3 1.1E+02 0.0025 32.1 7.8 73 236-318 75-149 (426)
58 PRK11148 cyclic 3',5'-adenosin 37.1 1.4E+02 0.003 29.1 7.8 54 235-297 39-93 (275)
59 cd07402 MPP_GpdQ Enterobacter 36.3 1.4E+02 0.0029 28.1 7.3 58 231-297 20-78 (240)
60 PF03437 BtpA: BtpA family; I 36.2 1E+02 0.0022 30.6 6.5 66 240-319 162-228 (254)
61 PF04321 RmlD_sub_bind: RmlD s 36.2 11 0.00024 37.3 -0.3 54 242-295 43-99 (286)
62 KOG3147 6-phosphogluconolacton 36.1 1.8E+02 0.0038 28.9 8.0 85 178-266 70-158 (252)
63 cd06167 LabA_like LabA_like pr 35.8 1.5E+02 0.0032 25.7 7.0 43 248-305 97-139 (149)
64 COG1654 BirA Biotin operon rep 34.6 22 0.00048 28.9 1.3 53 258-310 15-68 (79)
65 TIGR02931 anfK_nitrog Fe-only 34.6 1.3E+02 0.0027 32.3 7.4 70 238-318 80-160 (461)
66 PRK10528 multifunctional acyl- 33.8 1.3E+02 0.0028 27.6 6.6 65 220-295 46-114 (191)
67 cd01967 Nitrogenase_MoFe_alpha 33.0 94 0.002 32.2 6.0 72 236-317 73-146 (406)
68 cd03466 Nitrogenase_NifN_2 Nit 32.5 1.5E+02 0.0032 31.3 7.5 71 237-318 71-146 (429)
69 TIGR02482 PFKA_ATP 6-phosphofr 32.3 2.3E+02 0.0049 28.8 8.4 99 230-329 10-133 (301)
70 cd02067 B12-binding B12 bindin 32.1 70 0.0015 27.0 4.1 47 244-301 44-92 (119)
71 CHL00175 minD septum-site dete 31.9 49 0.0011 32.3 3.5 21 159-179 40-60 (281)
72 COG0683 LivK ABC-type branched 31.4 1.7E+02 0.0037 29.8 7.6 103 155-304 138-242 (366)
73 PF09383 NIL: NIL domain; Int 31.2 22 0.00048 27.8 0.8 51 240-290 17-71 (76)
74 cd01981 Pchlide_reductase_B Pc 31.2 97 0.0021 32.5 5.9 57 237-303 72-130 (430)
75 cd01821 Rhamnogalacturan_acety 31.0 1.3E+02 0.0029 27.3 6.1 45 250-295 65-113 (198)
76 cd01971 Nitrogenase_VnfN_like 31.0 90 0.002 32.9 5.6 58 237-304 73-131 (427)
77 cd02036 MinD Bacterial cell di 30.7 54 0.0012 29.0 3.4 20 158-177 23-42 (179)
78 PF02585 PIG-L: GlcNAc-PI de-N 30.3 98 0.0021 26.3 4.8 28 235-262 85-112 (128)
79 CHL00076 chlB photochlorophyll 30.0 1.4E+02 0.003 32.5 6.9 60 236-305 71-132 (513)
80 cd01973 Nitrogenase_VFe_beta_l 29.7 2.1E+02 0.0045 30.6 8.1 69 238-317 74-152 (454)
81 PF14639 YqgF: Holliday-juncti 29.4 1.2E+02 0.0027 27.4 5.5 26 231-256 44-69 (150)
82 COG3033 TnaA Tryptophanase [Am 28.7 2.5E+02 0.0053 29.7 7.9 121 172-309 99-252 (471)
83 COG0434 SgcQ Predicted TIM-bar 28.4 3.4E+02 0.0075 26.9 8.5 69 238-320 165-234 (263)
84 COG0455 flhG Antiactivator of 28.4 1.3E+02 0.0027 29.9 5.7 93 158-262 27-124 (262)
85 PF10609 ParA: ParA/MinD ATPas 27.9 1.9E+02 0.0041 23.7 5.7 55 223-297 6-61 (81)
86 cd03111 CpaE_like This protein 27.5 70 0.0015 26.6 3.3 15 163-177 29-43 (106)
87 cd01965 Nitrogenase_MoFe_beta_ 27.3 1.8E+02 0.0038 30.6 7.0 69 237-316 68-142 (428)
88 PRK10818 cell division inhibit 27.3 67 0.0014 31.0 3.6 17 161-177 29-45 (270)
89 cd05781 DNA_polB_B3_exo DEDDy 27.1 3.1E+02 0.0068 25.4 7.9 88 165-292 4-91 (188)
90 TIGR02026 BchE magnesium-proto 27.0 1.3E+02 0.0028 32.4 6.0 46 243-300 56-101 (497)
91 COG3172 NadR Predicted ATPase/ 27.0 1.9E+02 0.0042 27.2 6.2 64 240-303 104-170 (187)
92 PF03266 NTPase_1: NTPase; In 26.9 24 0.00051 32.4 0.3 42 249-299 94-135 (168)
93 CHL00073 chlN photochlorophyll 26.8 1E+02 0.0022 33.2 5.1 54 238-301 85-140 (457)
94 TIGR00619 sbcd exonuclease Sbc 26.6 3.1E+02 0.0067 26.6 8.1 57 233-297 23-83 (253)
95 TIGR02370 pyl_corrinoid methyl 26.0 1.6E+02 0.0034 27.7 5.7 37 243-290 128-164 (197)
96 COG2047 Uncharacterized protei 25.9 89 0.0019 30.6 4.0 45 250-301 83-127 (258)
97 cd03110 Fer4_NifH_child This p 25.6 51 0.0011 29.7 2.3 14 164-177 25-38 (179)
98 PF02484 Rhabdo_NV: Rhabdoviru 25.2 37 0.00081 28.4 1.1 24 155-178 53-76 (111)
99 cd01839 SGNH_arylesterase_like 24.8 1.7E+02 0.0038 26.7 5.8 36 248-288 77-117 (208)
100 PRK13234 nifH nitrogenase redu 24.6 70 0.0015 31.9 3.2 19 159-177 28-46 (295)
101 cd00363 PFK Phosphofructokinas 24.5 4.5E+02 0.0098 27.0 9.2 81 230-311 11-114 (338)
102 PRK07428 nicotinate-nucleotide 24.4 77 0.0017 31.9 3.5 39 272-310 224-262 (288)
103 PF06866 DUF1256: Protein of u 24.0 1.6E+02 0.0034 27.4 5.1 40 231-270 5-44 (163)
104 TIGR01968 minD_bact septum sit 23.7 85 0.0019 29.7 3.5 20 158-177 25-44 (261)
105 PRK00942 acetylglutamate kinas 23.7 2.8E+02 0.0062 27.3 7.4 63 233-302 6-68 (283)
106 PRK13232 nifH nitrogenase redu 23.6 77 0.0017 30.8 3.3 17 161-177 27-43 (273)
107 PF01729 QRPTase_C: Quinolinat 23.6 43 0.00092 31.0 1.4 47 258-309 99-145 (169)
108 TIGR01361 DAHP_synth_Bsub phos 23.5 7.1E+02 0.015 24.5 11.0 78 230-320 144-224 (260)
109 PRK13233 nifH nitrogenase redu 23.4 73 0.0016 30.9 3.1 16 162-177 30-45 (275)
110 TIGR03878 thermo_KaiC_2 KaiC d 23.3 1.7E+02 0.0036 28.6 5.6 49 240-297 121-174 (259)
111 PF02701 zf-Dof: Dof domain, z 23.3 26 0.00057 27.3 -0.1 10 144-153 16-25 (63)
112 COG4017 Uncharacterized protei 23.3 2E+02 0.0043 27.8 5.7 98 163-282 45-146 (254)
113 PRK12362 germination protease; 23.2 2.3E+02 0.005 29.1 6.5 108 145-271 3-119 (318)
114 KOG1432 Predicted DNA repair e 23.1 1.8E+02 0.0039 30.3 5.8 54 241-303 91-148 (379)
115 KOG4013 Predicted Cu2+ homeost 23.1 73 0.0016 30.6 2.8 43 255-308 154-197 (255)
116 PF00581 Rhodanese: Rhodanese- 23.0 1.2E+02 0.0026 24.3 3.9 19 284-302 91-109 (113)
117 PF06925 MGDG_synth: Monogalac 22.8 91 0.002 28.1 3.4 25 232-256 71-95 (169)
118 TIGR02016 BchX chlorophyllide 22.7 87 0.0019 31.3 3.5 19 158-176 23-41 (296)
119 KOG0782 Predicted diacylglycer 22.5 2.6E+02 0.0056 31.1 7.0 78 251-342 416-531 (1004)
120 cd02065 B12-binding_like B12 b 22.3 2.4E+02 0.0052 23.4 5.7 14 246-259 46-59 (125)
121 PRK11411 fecB iron-dicitrate t 22.2 5.3E+02 0.011 25.3 9.0 57 245-320 96-152 (303)
122 COG1091 RfbD dTDP-4-dehydrorha 22.2 1.3E+02 0.0027 30.4 4.5 54 242-295 42-98 (281)
123 PF03514 GRAS: GRAS domain fam 22.2 54 0.0012 34.1 2.0 26 155-182 101-126 (374)
124 PRK07896 nicotinate-nucleotide 22.2 82 0.0018 31.8 3.2 47 257-308 217-263 (289)
125 cd07383 MPP_Dcr2 Saccharomyces 22.1 3.4E+02 0.0074 24.8 7.2 49 242-297 33-84 (199)
126 cd01827 sialate_O-acetylestera 21.9 1.8E+02 0.004 25.9 5.2 37 248-288 65-105 (188)
127 COG1891 Uncharacterized protei 21.6 1E+02 0.0022 29.2 3.4 62 201-264 64-127 (235)
128 PLN02725 GDP-4-keto-6-deoxyman 21.2 1.5E+02 0.0033 28.6 4.8 54 242-295 41-99 (306)
129 cd02072 Glm_B12_BD B12 binding 21.1 3.2E+02 0.0068 24.2 6.3 46 245-301 45-91 (128)
130 COG1341 Predicted GTPase or GT 21.1 6.6E+02 0.014 26.7 9.5 86 154-258 92-179 (398)
131 cd07384 MPP_Cdc1_like Saccharo 21.0 3.7E+02 0.0081 24.4 7.1 16 241-256 36-51 (171)
132 PF02310 B12-binding: B12 bind 20.8 1.9E+02 0.0042 23.9 4.8 97 155-303 20-118 (121)
133 PRK00994 F420-dependent methyl 20.7 1.6E+02 0.0035 29.2 4.6 47 240-298 50-96 (277)
134 TIGR01283 nifE nitrogenase mol 20.6 2.2E+02 0.0047 30.3 6.1 63 237-310 108-172 (456)
135 TIGR01334 modD putative molybd 20.5 89 0.0019 31.3 3.0 47 257-308 206-252 (277)
136 PRK10037 cell division protein 20.4 89 0.0019 30.0 2.9 19 158-177 25-43 (250)
137 COG4671 Predicted glycosyl tra 20.3 1.4E+02 0.0031 31.3 4.4 30 228-257 84-113 (400)
138 cd01148 TroA_a Metal binding p 20.2 2.5E+02 0.0054 27.1 6.1 62 246-320 75-142 (284)
139 cd01523 RHOD_Lact_B Member of 20.1 1.9E+02 0.004 23.3 4.4 22 280-302 76-97 (100)
No 1
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-147 Score=1086.76 Aligned_cols=422 Identities=64% Similarity=1.170 Sum_probs=409.8
Q ss_pred CCCCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchh
Q 014167 2 RSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQH 81 (429)
Q Consensus 2 ~~~~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~ 81 (429)
.+|++|+|+|++++++|+||++|||+|+|++|+|+||.+|||.++|++++|..|+.+||++|||++||+||++++|+++.
T Consensus 4 ~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~ 83 (425)
T KOG1342|consen 4 LIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENME 83 (425)
T ss_pred cCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHH
Q 014167 82 LFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK 161 (429)
Q Consensus 82 ~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~ 161 (429)
....++.+||+++|||+|++||+||++++||||.||++|++++++|||||+||+|||||++||||||+|||||||++|||
T Consensus 84 ~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK 163 (425)
T KOG1342|consen 84 TFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLK 163 (425)
T ss_pred ccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHH
Q 014167 162 YHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTI 241 (429)
Q Consensus 162 ~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~i 241 (429)
+++||||||||+|||||||+|||.++||||||||+||+.||||||++.++|.++||+|+|||||++|++|++|..+|++|
T Consensus 164 ~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pI 243 (425)
T KOG1342|consen 164 YHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPI 243 (425)
T ss_pred hCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCC
Q 014167 242 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL 321 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~~ 321 (429)
|.++++.|+|++||+|||+|||.||||||||||++||++|+++++++++|+++|||||||++||||||||+|++++|+++
T Consensus 244 i~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~ 323 (425)
T KOG1342|consen 244 ISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQEL 323 (425)
T ss_pred HHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCccccccCCCCCCCCCCccccCCccccc
Q 014167 322 PNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERM 401 (429)
Q Consensus 322 ~~~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (429)
|++||+|+||+||+|||+|++.+++++|+|+++||++|++++.+|||++++|||||||.+|+.-......+++++++.|.
T Consensus 324 ~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~d~~~ 403 (425)
T KOG1342|consen 324 PNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDPDLRS 403 (425)
T ss_pred cccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998333333346778889999
Q ss_pred cccccccccCCCCCCCCCCCCC
Q 014167 402 DQHTQDKQIQRDDEFYEGDNDN 423 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
++...|++++.++||+|+++++
T Consensus 404 ~~~~~~~~~~~~~e~~d~~~~~ 425 (425)
T KOG1342|consen 404 SQESEDKDVQDDNEFYDGENEG 425 (425)
T ss_pred chhhhhcccccchhhcccccCC
Confidence 9999999999999999998864
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=2.4e-119 Score=926.30 Aligned_cols=386 Identities=63% Similarity=1.147 Sum_probs=371.6
Q ss_pred CCCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhh
Q 014167 3 SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHL 82 (429)
Q Consensus 3 ~~~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~ 82 (429)
.|++|+|+||+++++|+||++|||+|.|+++++++|.++||++++++++|++||.++|++|||++||++|++.++.+...
T Consensus 2 ~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 81 (436)
T PTZ00063 2 MRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRD 81 (436)
T ss_pred CCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhccc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999988765433
Q ss_pred hHhhhhccccC--CCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHH
Q 014167 83 FRQELTKYNLG--EDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELL 160 (429)
Q Consensus 83 ~~~~~~~~~l~--~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll 160 (429)
....+.+|+++ .|||+|+++|++|+++|||||.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 82 ~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~ 161 (436)
T PTZ00063 82 FTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILELL 161 (436)
T ss_pred chhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHH
Confidence 33345678898 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHH
Q 014167 161 KYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240 (429)
Q Consensus 161 ~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ 240 (429)
++++||||||||||||||||+|||++|+|||+|||++++ ||||||..+++|.+.|++|+|||||++|++|++|+.+|++
T Consensus 162 ~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~-ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~ 240 (436)
T PTZ00063 162 KYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGD-FFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKP 240 (436)
T ss_pred HhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCC-cCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcC-
Q 014167 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT- 319 (429)
Q Consensus 241 ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~- 319 (429)
+|.|+++.|+||+||+|||+|+|.+||||+|+||++||++|+++++++++|+++||||||+++++||||+++|++++|+
T Consensus 241 ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~ 320 (436)
T PTZ00063 241 VISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKH 320 (436)
T ss_pred HHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCCCCCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCccccccCCCCCCCCC
Q 014167 320 -ELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPE 389 (429)
Q Consensus 320 -~~~~~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~ 389 (429)
+++++||+|+||+||+|+|+|++++++|+|+|+++||++|+++|++|||.+++||||||+++|+++...+
T Consensus 321 ~~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~~~ 391 (436)
T PTZ00063 321 DEMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFDRD 391 (436)
T ss_pred ccCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCccccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999987654
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=1.8e-101 Score=789.85 Aligned_cols=376 Identities=41% Similarity=0.703 Sum_probs=339.9
Q ss_pred CCCeEEEE----EcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCC
Q 014167 3 SKDKISYF----YDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPD 78 (429)
Q Consensus 3 ~~~~v~~~----y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~ 78 (429)
++++|+|+ |.+++..|+|+++|||+|.|+++++++|+++||.++++++.|++||.++|++||+++||++|++..+.
T Consensus 18 ~~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 18 SRGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ccceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 46789999 78888899999999999999999999999999999999999999999999999999999999975332
Q ss_pred chhhhHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHH
Q 014167 79 TQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILE 158 (429)
Q Consensus 79 ~~~~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ 158 (429)
.... ......+.+++|||+|+++|++|++++||+|.||+++++|++++||||+||+|||++++|+||||||||||||++
T Consensus 98 ~~~~-~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ 176 (429)
T PTZ00346 98 SWLW-NAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILE 176 (429)
T ss_pred cccc-ccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHH
Confidence 1100 011223557789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHH
Q 014167 159 LLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLF 238 (429)
Q Consensus 159 ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f 238 (429)
|+++++||||||||||||||||++||+||+|||+|||+++..||||||...++|.|.|++|++||||++|++|++|+.+|
T Consensus 177 ll~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f 256 (429)
T PTZ00346 177 LLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLF 256 (429)
T ss_pred HHHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhc
Q 014167 239 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 318 (429)
Q Consensus 239 ~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg 318 (429)
+++|.|++++|+||+||+|||+|++.+||||+|+||.+||.+|+++++++++|++++|||||++.++||||+++|++|+|
T Consensus 257 ~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~~l~g 336 (429)
T PTZ00346 257 EHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETSILTG 336 (429)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC--CC--CchhhhhhCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHHH----hhcCCCCCccccc
Q 014167 319 TELPNE--IP--ENEYIKYFAPECSLRIPNGHIENLN-SKSYLSTIKMQVLEN----LRSIQHAPSVQMQ 379 (429)
Q Consensus 319 ~~~~~~--lP--~~~~~~~~~p~~~l~~~~~~~~n~n-~~~~l~~i~~~~~~~----l~~~~~~p~v~~~ 379 (429)
+++|++ || +.+|.+||+|+|+|++.++++.|.| +....++..+++.++ |+.++..|.+|..
T Consensus 337 ~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (429)
T PTZ00346 337 HPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAYQMMTEQIDRHVPHIQPHPRLQKA 406 (429)
T ss_pred CCCCCCCCCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhhccCCcHHHHHH
Confidence 999966 78 4579999999999999877777777 455555555555555 4455544555443
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-84 Score=653.41 Aligned_cols=325 Identities=34% Similarity=0.511 Sum_probs=302.2
Q ss_pred CeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhhH
Q 014167 5 DKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFR 84 (429)
Q Consensus 5 ~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~~ 84 (429)
+++.++|++.+..|.++..|||+|.|++++.++|++.++...+++++|++++.++|+++|+++||++|++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~---- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG---- 77 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc----
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999876511
Q ss_pred hhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHh-C
Q 014167 85 QELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY-H 163 (429)
Q Consensus 85 ~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~-~ 163 (429)
.++++.|||+++++|++|++++||+++|++.+++|+..++++|.||+|||++++|+|||+|||+||||++|+++ .
T Consensus 78 ----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~~~ 153 (340)
T COG0123 78 ----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKKGV 153 (340)
T ss_pred ----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHcCC
Confidence 46788999999999999999999999999999999877889999999999999999999999999999999996 6
Q ss_pred CcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHHH
Q 014167 164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 243 (429)
Q Consensus 164 ~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~ 243 (429)
+||+|||||+|||||||++||++|+|+|+|+|+++..||||||..+++|.++ +||++|||||+|++|++|+.+|+.++.
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~ 232 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVL 232 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888999999999999999 999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc----CCCEEEEcCCCCCchhHHHHHHHHHhhhhcC
Q 014167 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF----NLPLLVTGGGGYTKENVARCWTVETGILLDT 319 (429)
Q Consensus 244 ~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~----~~pvl~lggGGY~~~~var~w~~~t~~llg~ 319 (429)
|+++.|+||+||+|||+|+|.+||||+|+||..+|.+|+++++++ ++|+++||||||+..+++++|++++..|.|.
T Consensus 233 ~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~ 312 (340)
T COG0123 233 PLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGL 312 (340)
T ss_pred HHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999988876 5699999999999999999999999999996
Q ss_pred C---CCCCCCCc-hhhhhhCCCC
Q 014167 320 E---LPNEIPEN-EYIKYFAPEC 338 (429)
Q Consensus 320 ~---~~~~lP~~-~~~~~~~p~~ 338 (429)
. .+.++|.. +++..+.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
T COG0123 313 VEEELEEPLPEDLELRRAFRADY 335 (340)
T ss_pred Cccccccccccchhhhhhhccch
Confidence 4 34455554 3555555544
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=1e-79 Score=615.21 Aligned_cols=298 Identities=35% Similarity=0.588 Sum_probs=239.0
Q ss_pred cccccCCCCCCCCCCChHHHH-HHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhhHhhhhcc
Q 014167 12 DGDVGSVYFGPNHPMKPHRLC-MTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKY 90 (429)
Q Consensus 12 ~~~~~~~~~g~~HP~~p~R~~-~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~~~~~~~~ 90 (429)
+|.+. +.+++.|||+|.|+. ++..|...+++++. ++|+.++|++|||++||++|++.+..............
T Consensus 1 ~~~~~-~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQ-HQLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----T-T-CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCccc-CCCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 46777 889999999999999 55666666698766 89999999999999999999987643322111100000
Q ss_pred -c-c-CCCCCCChhHHHHHHHHHHHHHHHHHHHHcc--CcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC--
Q 014167 91 -N-L-GEDCPVFENLFEFCQIYAGGTIDAARRLNNQ--LCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH-- 163 (429)
Q Consensus 91 -~-l-~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g--~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~-- 163 (429)
. + +.|||+++++++++++++||++.|++.+.+| +..+|++++|| |||++++|+||||||||||||++|++++
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~ 152 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKYGL 152 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTT
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcccc
Confidence 0 1 5799999999999999999999999999999 45677885555 9999999999999999999999999853
Q ss_pred CcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCC-CCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHH
Q 014167 164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFP-GTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII 242 (429)
Q Consensus 164 ~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffP-gtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii 242 (429)
+||+|||||+|||||||++||+||+|||+|||+++..||| |||..+++|.++|+++++||||++|++|++|+.+|+++|
T Consensus 153 ~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l 232 (311)
T PF00850_consen 153 KRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEIL 232 (311)
T ss_dssp SSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhcc
Confidence 8999999999999999999999999999999999888999 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCC----CEEEEcCCCCCchhHHHHHHHHHhhhh
Q 014167 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL----PLLVTGGGGYTKENVARCWTVETGILL 317 (429)
Q Consensus 243 ~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~----pvl~lggGGY~~~~var~w~~~t~~ll 317 (429)
.|++++|+||+||+|||||++.+||+|.++||+++|.+++++++++.. |++++|||||++.++++||+.++++|.
T Consensus 233 ~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 233 LPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred ccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999744 999999999999999999999999873
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-48 Score=423.04 Aligned_cols=311 Identities=25% Similarity=0.375 Sum_probs=250.5
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhhH----hhhhccccCCCCC
Q 014167 22 PNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFR----QELTKYNLGEDCP 97 (429)
Q Consensus 22 ~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~~----~~~~~~~l~~D~p 97 (429)
.+||..|.|. +..+. +||..+|+.+ ||.++++.||+..|+..+.+.......... .......++.|
T Consensus 463 ~~~~~~p~r~--~t~~~--~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d-- 532 (797)
T KOG1343|consen 463 SRSPESPARF--TTGLH--TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSD-- 532 (797)
T ss_pred cCCcccchhh--hcccc--cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeeccc--
Confidence 4689999992 22222 8999999877 999999999999999986522111100000 00111122233
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH--HccCc--ceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC--CcEEEEec
Q 014167 98 VFENLFEFCQIYAGGTIDAARRL--NNQLC--DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDI 171 (429)
Q Consensus 98 ~f~~l~~~~~~~aGgsl~aa~~l--~~g~~--~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~--~RVl~IDi 171 (429)
++.....++|+...|+..+ +.++. .+|+.+++| |||....++|||+|||+|+|+++|.... .|||||||
T Consensus 533 ----t~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdw 607 (797)
T KOG1343|consen 533 ----TWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDW 607 (797)
T ss_pred ----HHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEee
Confidence 4444445555555544443 11221 389999998 9999999999999999999999998765 89999999
Q ss_pred ccccCCcceeccccCCCEEEEeeccc-CCCCCCCCCCCcccCCCCCcceEEeccCCCCCC-hHHHHHHHHHHHHHHHHhc
Q 014167 172 DVHHGDGVEEAFYFTDRVMTVSFHKF-GDLFFPGTGDVKEIGEREGKFYAINVPLKDGID-DTSFTRLFKTIISKVVETY 249 (429)
Q Consensus 172 DvHHGDGtq~aF~~d~~VltiSiH~~-g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~-D~~y~~~f~~ii~~i~~~f 249 (429)
|||||||||.+||.+++||++|+|++ +..|||++|..+++|.+.|+++++|||++.+.. |.+|+.+|+.+++|+++.|
T Consensus 608 Dvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F 687 (797)
T KOG1343|consen 608 DVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEF 687 (797)
T ss_pred cccCCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHh
Confidence 99999999999999999999999999 556999999999999999999999999987654 6999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc-CCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCCCCCCCCc
Q 014167 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPEN 328 (429)
Q Consensus 250 ~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~-~~pvl~lggGGY~~~~var~w~~~t~~llg~~~~~~lP~~ 328 (429)
.||+|++++|||+..+||||...+|.++|+.+++.++++ ++|+++.++|||+...++++-..++.+|+|.+.|. ++..
T Consensus 688 ~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~-~~~~ 766 (797)
T KOG1343|consen 688 NPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP-LSEA 766 (797)
T ss_pred CCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC-cccc
Confidence 999999999999999999999999999999999999998 78999999999999999999999999999988774 2221
Q ss_pred hhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHH
Q 014167 329 EYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQ 362 (429)
Q Consensus 329 ~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~ 362 (429)
| ....+|.|...+|+++++.
T Consensus 767 ---------~-----~~~~~~~~a~~~l~~~~~~ 786 (797)
T KOG1343|consen 767 ---------Y-----LPQKPNSNAVATLEKVIEV 786 (797)
T ss_pred ---------c-----cCCCcchHHHHHHHHHHHh
Confidence 1 1234666888888888753
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-41 Score=313.75 Aligned_cols=292 Identities=26% Similarity=0.466 Sum_probs=237.9
Q ss_pred CCCeEEEEEcccccCCCC--CCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCch
Q 014167 3 SKDKISYFYDGDVGSVYF--GPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (429)
Q Consensus 3 ~~~~v~~~y~~~~~~~~~--g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~ 80 (429)
+.-|+.++|++++.--.. .+-||++..+..-++++|.+.+++..-.+++|.++|.++|+++|+.+|++.|+..-.-..
T Consensus 12 p~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~ 91 (324)
T KOG1344|consen 12 PAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQ 91 (324)
T ss_pred ccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeE
Confidence 345788999998863322 367999999999999999999999999999999999999999999999999986432211
Q ss_pred hhhHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHH
Q 014167 81 HLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELL 160 (429)
Q Consensus 81 ~~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll 160 (429)
+ .+..-..+-+.|.+-..+..-.++.||||+.|+....+ ..+|||..||+|||..+++.|||.+.||.+||..|-
T Consensus 92 --I-~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle--~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lF 166 (324)
T KOG1344|consen 92 --I-TEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALE--RGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLF 166 (324)
T ss_pred --E-EeccccccCchhhhhhhhccceeeccCceeehhhhhhh--cCeEEeecCccceeccCCCCceeehhhHHHHHHHHH
Confidence 0 01111223356666666666678899999999986443 249999999999999999999999999999999886
Q ss_pred Hh--CCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHH
Q 014167 161 KY--HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLF 238 (429)
Q Consensus 161 ~~--~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f 238 (429)
.+ ..|++|||+|+|+|||.|.-|.++ .|..+.+ |....||+.-...+ .-..-|.|..|+.|++|+.-+
T Consensus 167 er~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~--ynr~iyp~D~~Ak~-------~Ir~kVEl~~gTeddeYLrkl 236 (324)
T KOG1344|consen 167 ERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDM--YNRFIYPRDHVAKE-------SIRCKVELRNGTEDDEYLRKL 236 (324)
T ss_pred hhhhhhheEEEecccccCCccccccccc-eeehhhh--hhhhccchhHHHHH-------HhhheeeeecCCCchHHHHHH
Confidence 55 489999999999999999999876 6665554 56678997544332 123467888999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHH----HHHHHHhcCCCEEEEcCCCCCchhHHHHHH
Q 014167 239 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAE----CVRFVKKFNLPLLVTGGGGYTKENVARCWT 310 (429)
Q Consensus 239 ~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~----~~~~l~~~~~pvl~lggGGY~~~~var~w~ 310 (429)
+..+...+.+|+||+||..+|.|.+.|||||.+.+|++|..+ .+++.+..++|++++..|||-.+ .||..+
T Consensus 237 ~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~-sArvIa 311 (324)
T KOG1344|consen 237 KRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKA-SARVIA 311 (324)
T ss_pred HHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehh-hhhhhH
Confidence 999999999999999999999999999999999999999876 45667778999999999999764 344443
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-34 Score=311.67 Aligned_cols=312 Identities=20% Similarity=0.217 Sum_probs=257.1
Q ss_pred eEEEEEcccccCCC--CCCCCC-CChHHHHHHHHHHHhCCCCCCcEEeCC-CCCCHHHHHccCchHHHHHHHHhCCCchh
Q 014167 6 KISYFYDGDVGSVY--FGPNHP-MKPHRLCMTHHLVLSYDLHKKMEIYRP-HKAYPVELAQFHSADYVEFLHRITPDTQH 81 (429)
Q Consensus 6 ~v~~~y~~~~~~~~--~g~~HP-~~p~R~~~~~~ll~~~gl~~~~~~~~p-~~at~~el~~~Hs~~Yi~~l~~~~~~~~~ 81 (429)
++.++|++....|. -...|+ +.++|++.+...+.+.++...+.+..+ +.|+.++++.+|+++|++++.........
T Consensus 30 ~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~e 109 (797)
T KOG1343|consen 30 QKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTAE 109 (797)
T ss_pred hhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcch
Confidence 67778887777664 234455 888999988888999999888877776 89999999999999999998764421111
Q ss_pred hhHh-hhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCc--ceeeecCCCCCCccccCCCCccccchHHHHHHH
Q 014167 82 LFRQ-ELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLC--DIAINWAGGLHHAKKCEASGFCYINDLVLGILE 158 (429)
Q Consensus 82 ~~~~-~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~--~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ 158 (429)
.... ...+ .+.+++....+..+..++|+++...+.+..|++ ..|+.+++| |||.++...|||++||||++..+
T Consensus 110 ~~l~~~~~~---~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~~ 185 (797)
T KOG1343|consen 110 EGLNHSSSR---YPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRSS 185 (797)
T ss_pred hhhhcccCC---CCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhhc
Confidence 1000 0111 134555666777778888888887776666643 356677777 99999999999999999999987
Q ss_pred HHHhC--CcEEEEecccccCCcceecccc--CCCEEEEeeccc-CCCCCCC--CCCCcccCCCCCcceEEeccCC-CCCC
Q 014167 159 LLKYH--ARVLYIDIDVHHGDGVEEAFYF--TDRVMTVSFHKF-GDLFFPG--TGDVKEIGEREGKFYAINVPLK-DGID 230 (429)
Q Consensus 159 ll~~~--~RVl~IDiDvHHGDGtq~aF~~--d~~VltiSiH~~-g~~ffPg--tG~~~~~G~g~G~~~~vNvPL~-~g~~ 230 (429)
.+..+ +||+++|||+|||+|||..|++ |++|+++|+|++ ...|||+ +|..+.+|.|.|.|+++|+|+. .|.+
T Consensus 186 ~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~ 265 (797)
T KOG1343|consen 186 PLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMT 265 (797)
T ss_pred cccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCc
Confidence 66544 9999999999999999999999 999999999999 3459998 4888899999999999999997 4889
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCC-CCCcccCHHHHHHHHHHHHhcC-CCEEEEcCCCCCchhHHHH
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDR-LGCFNLSIDGHAECVRFVKKFN-LPLLVTGGGGYTKENVARC 308 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDp-lg~~~ls~~g~~~~~~~l~~~~-~pvl~lggGGY~~~~var~ 308 (429)
|.+|..+|..++.|...+|+||+++++||+|++.||+ +|.+..|+.+|+..+...+-.+ +++.++++|||+....+..
T Consensus 266 ~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~ 345 (797)
T KOG1343|consen 266 DADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS 345 (797)
T ss_pred chhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh
Confidence 9999999999999999999999999999999999997 7999999999999998855555 8999999999999998887
Q ss_pred HHHHHhhhhcCCCC
Q 014167 309 WTVETGILLDTELP 322 (429)
Q Consensus 309 w~~~t~~llg~~~~ 322 (429)
......++|.+.+
T Consensus 346 -~~~~~~llg~~~~ 358 (797)
T KOG1343|consen 346 -QLVLNKLLGKPIE 358 (797)
T ss_pred -hhhHHhhcCCCcc
Confidence 5666777886654
No 9
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.69 E-value=21 Score=39.23 Aligned_cols=167 Identities=17% Similarity=0.229 Sum_probs=100.8
Q ss_pred CCCCccccc--hHHHHHHHHHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcce
Q 014167 142 EASGFCYIN--DLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFY 219 (429)
Q Consensus 142 ~asGFC~~N--diaiai~~ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~ 219 (429)
...++|-++ |-+=+|...+...=- .-||+|.|-=|++..+|-..|-=+-||.- =||||+....+- |
T Consensus 312 ~~~~~~~~~~~dd~e~a~~I~~d~Id-ILvDl~g~T~d~r~~v~A~RpAPiqvswl-----Gy~aT~g~p~~D------Y 379 (620)
T COG3914 312 AVEKWYPIGRMDDAEIANAIRTDGID-ILVDLDGHTVDTRCQVFAHRPAPIQVSWL-----GYPATTGSPNMD------Y 379 (620)
T ss_pred hhhheeccCCcCHHHHHHHHHhcCCe-EEEeccCceeccchhhhhcCCCceEEeec-----ccccccCCCcce------E
Confidence 456788888 333334344333333 45899999999999999998877778874 368876533321 2
Q ss_pred EEeccC--CCCCChHHHHHHHHHHHHHHHHhcCC--------------------CEEEEecCCCCCCCCCCCCcccCHHH
Q 014167 220 AINVPL--KDGIDDTSFTRLFKTIISKVVETYAP--------------------GAIVLQCGADSLAGDRLGCFNLSIDG 277 (429)
Q Consensus 220 ~vNvPL--~~g~~D~~y~~~f~~ii~~i~~~f~P--------------------d~Ivvq~G~Ds~~gDplg~~~ls~~g 277 (429)
-|-=|+ |++ -.+-|-+. |-++-.-|+| +++|..||- +.++.+++-
T Consensus 380 ~I~D~y~vPp~-ae~yysEk----l~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~~--------n~~K~~pev 446 (620)
T COG3914 380 FISDPYTVPPT-AEEYYSEK----LWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCFN--------NYFKITPEV 446 (620)
T ss_pred EeeCceecCch-HHHHHHHH----HHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEecC--------CcccCCHHH
Confidence 222221 222 22333332 2222233443 688888873 567888888
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCC-----CCCCCCCchhhhhhC
Q 014167 278 HAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTE-----LPNEIPENEYIKYFA 335 (429)
Q Consensus 278 ~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~-----~~~~lP~~~~~~~~~ 335 (429)
+....+.|++...-++++.+||=+....++.=.. +.-.|.. +-..-|..+++++|+
T Consensus 447 ~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~l--a~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 447 FALWMQILSAVPNSVLLLKAGGDDAEINARLRDL--AEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred HHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHH--HHHcCCChhheeecCCCCCHHHHHhhc
Confidence 9889999999988899999999666544443211 1122322 112334447888886
No 10
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=75.89 E-value=6.6 Score=39.10 Aligned_cols=64 Identities=14% Similarity=0.310 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchh
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~ 304 (429)
+|.+.|+..+ |-+.+|+-..+|+-.|-.++..| ++ +.+..-+..+.+.+.+++++-|||.....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~~ 64 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQIDQ 64 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHHH
Confidence 3778888875 66889999999999998888754 22 33444455566668899999999987654
No 11
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=72.79 E-value=8.1 Score=38.59 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccC----HHHHHHHHHHHHhc--CCCEEEEcCCC
Q 014167 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS----IDGHAECVRFVKKF--NLPLLVTGGGG 299 (429)
Q Consensus 241 ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls----~~g~~~~~~~l~~~--~~pvl~lggGG 299 (429)
.|.+++++++||++|+ +|.|+...+.-...+|. .+-|-++|+.++.+ +.-=|++..|.
T Consensus 144 ~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGA 207 (283)
T TIGR02855 144 KVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGA 207 (283)
T ss_pred HHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcch
Confidence 5667889999998776 89999986653333443 34566788888877 34456666664
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=72.69 E-value=2.7 Score=37.54 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=30.5
Q ss_pred ccccCCCCcccc----ch-HHHHHHHHHHhC--CcEEEEecccccCCccee
Q 014167 138 AKKCEASGFCYI----ND-LVLGILELLKYH--ARVLYIDIDVHHGDGVEE 181 (429)
Q Consensus 138 A~~~~asGFC~~----Nd-iaiai~~ll~~~--~RVl~IDiDvHHGDGtq~ 181 (429)
-.+-.++|||++ ++ +-.|++++-... +|++-||||.-.=+|-|.
T Consensus 72 r~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 72 RFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred cCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 345678999987 34 445556664432 899999999876666653
No 13
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.33 E-value=19 Score=32.63 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=41.2
Q ss_pred EeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHH-Hhc--CCCEEEE
Q 014167 221 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFV-KKF--NLPLLVT 295 (429)
Q Consensus 221 vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l-~~~--~~pvl~l 295 (429)
+|.-.. |.+-..++.-|...+......++||+|+|..|..=.....-+....+.+.|.+.++.+ ... +.|++++
T Consensus 41 ~N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 465543 3445566666666555444458999999999986544321112235566666544333 222 4455544
No 14
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=71.72 E-value=12 Score=33.47 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=37.8
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHHHHHHHHHHHhc--CCCEEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 295 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~-Ds~~gDplg~~~ls~~g~~~~~~~l~~~--~~pvl~l 295 (429)
.+|..+...+ -.+.+..+. ..+..++|++||++.|. |...+-+ ..-..+.+.++++.+++. +.+++++
T Consensus 25 v~N~Gi~G~~-~~~~~~~~~----~~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 25 VVNRGFGGST-LADCLHYFD----RLVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred eeecCcccch-HHHHHHHHH----hhhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 4666664433 223333333 34456899999999998 5433221 222234455667777665 3455554
No 15
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=69.27 E-value=36 Score=35.56 Aligned_cols=121 Identities=18% Similarity=0.297 Sum_probs=72.9
Q ss_pred HHHHHHHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCc--ccCCCCCcceEEeccC------
Q 014167 154 LGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK--EIGEREGKFYAINVPL------ 225 (429)
Q Consensus 154 iai~~ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~--~~G~g~G~~~~vNvPL------ 225 (429)
+-+.|+.|...|.+|||+|+-+|- - -+|||=..- +.-.+.-.|+.++-||
T Consensus 122 ~L~nyavk~gr~Plfv~LDvgQ~s--i--------------------tiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~ 179 (415)
T KOG2749|consen 122 ILLNYAVKQGRRPLFVELDVGQGS--I--------------------TIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGL 179 (415)
T ss_pred HHHHHHHHcCCcceEEEcCCCCCc--e--------------------ecccchhheecccccchhhCcccCCceeeeccC
Confidence 345688888999999999995541 0 233321100 0001112334444454
Q ss_pred -CCCCChHHHHHHHHHHHHHHHHhc--CCC-----EEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 226 -KDGIDDTSFTRLFKTIISKVVETY--APG-----AIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 226 -~~g~~D~~y~~~f~~ii~~i~~~f--~Pd-----~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
.+..+-+-|..++.++-+-+-+++ +|+ +||=-|| |.. .+||..+...++.|+.-+++|+|
T Consensus 180 ~sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g-----------~i~-~egy~~llhai~~f~v~vviVLg 247 (415)
T KOG2749|consen 180 TSPSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCG-----------WIE-GEGYAALLHAIKAFEVDVVIVLG 247 (415)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccc-----------eec-cccHHHHHHHHHHcCccEEEEec
Confidence 456667788888877666666666 343 2332222 222 67899999999999998888887
Q ss_pred CCCCchhHHHHHHHHHhh
Q 014167 298 GGYTKENVARCWTVETGI 315 (429)
Q Consensus 298 GGY~~~~var~w~~~t~~ 315 (429)
-- |.|..+-..
T Consensus 248 ~E-------rLy~~lkk~ 258 (415)
T KOG2749|consen 248 QE-------RLYSSLKKD 258 (415)
T ss_pred cH-------HHHHHHHhh
Confidence 43 667655444
No 16
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=68.52 E-value=12 Score=37.69 Aligned_cols=58 Identities=28% Similarity=0.415 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccC----HHHHHHHHHHHHhc--CCCEEEEcCCC
Q 014167 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS----IDGHAECVRFVKKF--NLPLLVTGGGG 299 (429)
Q Consensus 241 ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls----~~g~~~~~~~l~~~--~~pvl~lggGG 299 (429)
.|..++++++||++|+ +|.|++..+.-...+|+ .+-|-++|+.++.+ +.-=|++..|.
T Consensus 145 ~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGA 208 (287)
T PF05582_consen 145 KIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGA 208 (287)
T ss_pred HHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcch
Confidence 5667889999998776 89999877763333342 34566788888877 44455665554
No 17
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.37 E-value=15 Score=33.24 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=38.2
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh--cCCCEEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK--FNLPLLVT 295 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~--~~~pvl~l 295 (429)
..|+... |.+-.+++..++. +..++||+|++..|..=.... ....-..+.+.++++.+++ -+.+++++
T Consensus 43 ~~n~g~~-G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~--~~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 43 WRLFAKT-GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHL--TSIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred EEEEecC-CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCC--CCHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3555553 3445555555544 456899999999998433211 0111123445556777776 35666664
No 18
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.69 E-value=19 Score=32.26 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=39.5
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHH----HHHHHHHHHhc--CCCEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKF--NLPLL 293 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g----~~~~~~~l~~~--~~pvl 293 (429)
..|..+...++. .+...-...+...+...+||+||+++|..=.. ....+.+. +..+++.+++. +.+++
T Consensus 27 v~N~g~~G~t~~-~~~~~~~~~~~~~l~~~~pd~Vii~~G~ND~~-----~~~~~~~~~~~~~~~li~~i~~~~~~~~iv 100 (189)
T cd01825 27 YDNLGVNGASAS-LLLKWDAEFLQAQLAALPPDLVILSYGTNEAF-----NKQLNASEYRQQLREFIKRLRQILPNASIL 100 (189)
T ss_pred EecCccCchhhh-hhhccCHHHHHHHHhhCCCCEEEEECCCcccc-----cCCCCHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 355555443332 33332223444567789999999999965432 22234444 44556666663 45666
Q ss_pred EEc
Q 014167 294 VTG 296 (429)
Q Consensus 294 ~lg 296 (429)
+++
T Consensus 101 ~~~ 103 (189)
T cd01825 101 LVG 103 (189)
T ss_pred EEc
Confidence 554
No 19
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=64.45 E-value=12 Score=39.30 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchh
Q 014167 234 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (429)
Q Consensus 234 y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~ 304 (429)
|...|++.+ |-++.|+=..+|+=+|-.++..+.+ ..+..-+..+++.+.++++|-|||..+..
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~~-------~~~~~~i~~l~~~g~~~vlVHGgg~~i~~ 63 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGNL-------GNIVADIALLHSLGVRLVLVHGARPQIER 63 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCccH-------HHHHHHHHHHHHCCCcEEEEcCCCHHHHH
Confidence 456777764 7789999999999999877754321 24555566777778899999999976643
No 20
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=63.65 E-value=36 Score=31.42 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc---CCCEEEEcC
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGG 297 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~---~~pvl~lgg 297 (429)
.++...+|+.++.. +.+.+||+||+ +| |. +.....+...+..+.+.++++ +.|+.++.|
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~d~i~~-~G-D~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVEL-AIEEKVDFVLI-AG-DL-----FDSNNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHHH-HHhcCCCEEEE-CC-cc-----cCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 46678888888755 55679998766 32 44 333334555555666666665 788877765
No 21
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.89 E-value=17 Score=30.56 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 014167 242 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 301 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~ 301 (429)
+...+.+++||+|.+++- +.-+.....++++.+|+.+..+.++.||.+-
T Consensus 43 l~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 43 LVEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HHHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred HHHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 334567789999999764 2334445566777788775555555555553
No 22
>PRK05279 N-acetylglutamate synthase; Validated
Probab=62.34 E-value=25 Score=37.12 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchh
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~ 304 (429)
..|...|+..+ |-+.+|+=..+|+-+|-.++..+ ++ +.+..-+..+++.+.++++|-|||.....
T Consensus 7 ~~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 7 TEFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred hHHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 45888888875 66788888899999998888643 12 33445555666778899999999988764
No 23
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=62.06 E-value=1e+02 Score=28.78 Aligned_cols=24 Identities=8% Similarity=0.391 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecC
Q 014167 236 RLFKTIISKVVETYAPGAIVLQCG 259 (429)
Q Consensus 236 ~~f~~ii~~i~~~f~Pd~Ivvq~G 259 (429)
..++.++..+.++|++|+||+=|+
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346777878888898899999776
No 24
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=60.47 E-value=64 Score=32.04 Aligned_cols=87 Identities=26% Similarity=0.406 Sum_probs=48.4
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc--CCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCCCC
Q 014167 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTGGGGYTKENVARCWTVETGILLDTELPN 323 (429)
Q Consensus 246 ~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~--~~pvl~lggGGY~~~~var~w~~~t~~llg~~~~~ 323 (429)
+..-.+|.|+++-=.-+..-| + +.++.+++. ..| +++|||=|+.|+.+.|...-.+.+|..
T Consensus 167 ~~~~~aDavivtG~~TG~~~d------~------~~l~~vr~~~~~~P--vllggGvt~eNv~e~l~~adGviVgS~--- 229 (257)
T TIGR00259 167 VERGLADAVILSGKTTGTEVD------L------ELLKLAKETVKDTP--VLAGSGVNLENVEELLSIADGVIVATT--- 229 (257)
T ss_pred HHhcCCCEEEECcCCCCCCCC------H------HHHHHHHhccCCCe--EEEECCCCHHHHHHHHhhCCEEEECCC---
Confidence 334459999885322222222 1 244455442 456 577999999999999886334444421
Q ss_pred CCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 014167 324 EIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLEN 366 (429)
Q Consensus 324 ~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~ 366 (429)
|+ .+..+.|.-+.+.+++..+.+.+-
T Consensus 230 -------~K----------~~G~~~n~~D~~rV~~Fm~~v~~~ 255 (257)
T TIGR00259 230 -------IK----------KDGVFNNFVDQARVSQFVEKVAHG 255 (257)
T ss_pred -------cc----------cCCccCCCcCHHHHHHHHHHHHHh
Confidence 11 133455555666666665555443
No 25
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=57.81 E-value=49 Score=29.18 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=38.1
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHH----HHHHHHHHhcCCCEEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFNLPLLVT 295 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~----~~~~~~l~~~~~pvl~l 295 (429)
.+|.-....+. ...+..+. ..+..++||+|+++.|..=. .. ..+.+.| .++++.+++.+.+++++
T Consensus 39 v~n~g~~G~~~-~~~~~~l~----~~~~~~~pd~v~i~~G~ND~----~~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 39 VINAGVSGDTT-AGGLARLP----ALLAQHKPDLVILELGGNDG----LR--GIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred EEecCcCCccc-HHHHHHHH----HHHHhcCCCEEEEeccCccc----cc--CCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 45665543322 23333343 34456899999999997532 22 2344444 45666777667777765
Q ss_pred c
Q 014167 296 G 296 (429)
Q Consensus 296 g 296 (429)
.
T Consensus 108 ~ 108 (177)
T cd01822 108 G 108 (177)
T ss_pred e
Confidence 3
No 26
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=56.29 E-value=33 Score=29.38 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCc
Q 014167 239 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (429)
Q Consensus 239 ~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~ 302 (429)
+..+..+.+.++||+|.++| +..+.....++++.+|+.+..+.++.||.+..
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~------------~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISL------------MTSAIYEALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred HHHHHHHHHhcCCCEEEEee------------ccccHHHHHHHHHHHHHHCCCCEEEECCcchh
Confidence 34444544449999999974 22233345667788888765566666666543
No 27
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.06 E-value=43 Score=29.62 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=25.8
Q ss_pred hcCCCEEEEecCCCCCCCCCCCCcccCHH----HHHHHHHHHHh--cCCCEEEE
Q 014167 248 TYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKK--FNLPLLVT 295 (429)
Q Consensus 248 ~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~----g~~~~~~~l~~--~~~pvl~l 295 (429)
.++||+||++.|..=. .. +.++. .+.++++.+++ -+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~----~~--~~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDL----AQ--GTSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCC----CC--CCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6899999999996432 22 23444 44455666666 35566654
No 28
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=55.40 E-value=61 Score=27.04 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=34.3
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCC--CEEEEcC
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL--PLLVTGG 297 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~--pvl~lgg 297 (429)
++|+|+.. +..-+..++.. +...+.+.||+-|+..... +.....++.+.+++.+. .-+.++.
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~r---------s~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQGR---------GPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCcc---------cHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 58999853 11112223322 2234567788888742221 22333344444545553 4467778
Q ss_pred CCCCc
Q 014167 298 GGYTK 302 (429)
Q Consensus 298 GGY~~ 302 (429)
||++-
T Consensus 106 GG~~~ 110 (113)
T cd01443 106 GGIKA 110 (113)
T ss_pred Chhhh
Confidence 99853
No 29
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=55.07 E-value=1.7e+02 Score=26.97 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.3
Q ss_pred HHhCCcEEEEecccccC
Q 014167 160 LKYHARVLYIDIDVHHG 176 (429)
Q Consensus 160 l~~~~RVl~IDiDvHHG 176 (429)
.+...||++||.|....
T Consensus 43 a~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 43 AQAGYKTLLIDGDMRNS 59 (204)
T ss_pred HhCCCeEEEEeCCCCCh
Confidence 34568999999998654
No 30
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=54.69 E-value=47 Score=29.47 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=38.2
Q ss_pred eEEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc--CCCEEEE
Q 014167 219 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 295 (429)
Q Consensus 219 ~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~--~~pvl~l 295 (429)
-.+|..+...+ -..++..+ .+.+...+||+|+|+.|..=..... ...-..+.+.++++.+++. +.+++++
T Consensus 25 ~v~n~g~~G~t-~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 25 TVNNLGIAGIS-SRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred eEEeccccccc-HHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35777775443 33444443 2334568999999999986443221 1112233455566666653 3445543
No 31
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=54.68 E-value=50 Score=29.55 Aligned_cols=65 Identities=14% Similarity=0.268 Sum_probs=36.6
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHH----HHHHHHHHHHhcCCCEEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~----g~~~~~~~l~~~~~pvl~l 295 (429)
.+|..+. |.+-.+++..++.. +...+||+|+++.|..=.... .+.. .+.++++.+++.+.+++++
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~~~------~~~~~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYED----VIALKPAVVIIMGGTNDIIVN------TSLEMIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred EEecCcC-CccHHHHHHHHHHH----HHhcCCCEEEEEeccCccccC------CCHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 4555443 33334455444433 345799999999998633321 2333 3445666666666665554
No 32
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=54.38 E-value=47 Score=29.67 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHH----HHHHHHhcCCCEEEE
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAE----CVRFVKKFNLPLLVT 295 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~----~~~~l~~~~~pvl~l 295 (429)
.....+...+..++ .++||+||+..|..=... -+.+.+.+.+ +++.++.-+.+++++
T Consensus 51 ~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~vil~ 111 (185)
T cd01832 51 RTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR-----PGTDPDTYRADLEEAVRRLRAAGARVVVF 111 (185)
T ss_pred hHHHHHHHHHHHHH-hcCCCEEEEecccccccc-----CCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 33333333344443 469999999999742211 1345555444 445555445555554
No 33
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=52.42 E-value=47 Score=34.50 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHHHhC--CcEEEEecccccCCccee
Q 014167 148 YINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEE 181 (429)
Q Consensus 148 ~~Ndiaiai~~ll~~~--~RVl~IDiDvHHGDGtq~ 181 (429)
.-+++..++..+.+.. .+|+ +|+=|||+..+
T Consensus 244 ~~~~i~~a~~~l~k~~l~~~vm---VD~SH~Ns~K~ 276 (353)
T PRK12755 244 DAASVAACEAQLEKAGLRPRLM---IDCSHANSGKD 276 (353)
T ss_pred CHHHHHHHHHHHHHcCCCCcEE---ecCCccccccc
Confidence 4578888887777654 5665 58899998764
No 34
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.90 E-value=47 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHHHHhcCCCEEEEecCCCCC
Q 014167 243 SKVVETYAPGAIVLQCGADSL 263 (429)
Q Consensus 243 ~~i~~~f~Pd~Ivvq~G~Ds~ 263 (429)
...+...+||+|++..|..=+
T Consensus 52 ~~~l~~~~pd~vii~~G~ND~ 72 (200)
T cd01829 52 KELIAEEKPDVVVVFLGANDR 72 (200)
T ss_pred HHHHhcCCCCEEEEEecCCCC
Confidence 444567899999999998544
No 35
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=49.39 E-value=57 Score=32.46 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCch
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~ 303 (429)
+....|++.. |-+.+|+=..+|+-+|-+++..+.+ .+.+.+=+.++++.+.++++|-|||.-..
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l------~~~~~~di~~l~~~g~~~VlVHGgg~~i~ 69 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL------KADIIKDILFLSCIGLKIVVVHGGGPEIN 69 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCcEEEEeCCcHHHH
Confidence 5577888875 7789999999999999877654422 11233445566778899999999998654
No 36
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=49.18 E-value=56 Score=30.61 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=44.5
Q ss_pred eEEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEc
Q 014167 219 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTG 296 (429)
Q Consensus 219 ~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lg 296 (429)
|.||+ +.+..+.-+.+..+.+. -|+||+ |-.|-|.|..+.|.+.++.+...+.|+++++
T Consensus 79 Y~V~v--------~~le~i~~~al~rA~~~--aDvIII---------DEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 79 YGVNV--------EGLEEIAIPALRRALEE--ADVIII---------DEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EEeeH--------HHHHHHhHHHHHHHhhc--CCEEEE---------ecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 77887 22333554555554443 588888 8999999999999999999998889988764
No 37
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=48.81 E-value=68 Score=33.09 Aligned_cols=59 Identities=15% Similarity=0.297 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc---CCCEEEEcC
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGG 297 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~---~~pvl~lgg 297 (429)
-+++..+|..++. ++.+-++|+||+ +||=.=..+.|++.-....++++.+ ++|++++-|
T Consensus 22 ~~d~~~~f~~~l~-~a~~~~vD~vli-------AGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~G 83 (390)
T COG0420 22 LEDQKKAFDELLE-IAKEEKVDFVLI-------AGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAG 83 (390)
T ss_pred hHHHHHHHHHHHH-HHHHccCCEEEE-------ccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecC
Confidence 5678888888875 567788999988 4676666788888887777777766 589888755
No 38
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=47.38 E-value=50 Score=34.58 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH
Q 014167 229 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI 275 (429)
Q Consensus 229 ~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~ 275 (429)
.+...|++..+.--...+++ +=-.||-+|||||.--| ||..-+.-
T Consensus 116 SGEP~f~E~mq~kYhd~A~e-kGVYIVsaCGfDSIPaD-lGv~f~~k 160 (423)
T KOG2733|consen 116 SGEPQFMERMQLKYHDLAKE-KGVYIVSACGFDSIPAD-LGVMFLRK 160 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCeEEEeecccCCCCcc-ceeeeehh
Confidence 56788888776555444433 44589999999999998 67765543
No 39
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.70 E-value=47 Score=30.66 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=28.3
Q ss_pred HHHhcCCCEEEEecCCCCCCCCCCC--CcccCHH----HHHHHHHHHHhcCCCEEE
Q 014167 245 VVETYAPGAIVLQCGADSLAGDRLG--CFNLSID----GHAECVRFVKKFNLPLLV 294 (429)
Q Consensus 245 i~~~f~Pd~Ivvq~G~Ds~~gDplg--~~~ls~~----g~~~~~~~l~~~~~pvl~ 294 (429)
++..-+|+.|+|.+|..=......+ .-.++.+ .+..+++.+++.+.++++
T Consensus 69 v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 69 VLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3444579999999998643321110 0123443 455566667766666554
No 40
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=46.33 E-value=30 Score=32.28 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=27.4
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHH----HHHHHHHHHHhc--CCCEEEE
Q 014167 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKF--NLPLLVT 295 (429)
Q Consensus 246 ~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~----g~~~~~~~l~~~--~~pvl~l 295 (429)
+..++|++|||.+|..-.... .+.+ .+.++++.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~~------~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGHT------TTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCCC------CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456899999999998754321 1444 445566666665 3455554
No 41
>PRK04531 acetylglutamate kinase; Provisional
Probab=45.99 E-value=36 Score=35.86 Aligned_cols=52 Identities=17% Similarity=0.386 Sum_probs=40.3
Q ss_pred HHHHhcCC----CEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCch
Q 014167 244 KVVETYAP----GAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 244 ~i~~~f~P----d~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~ 303 (429)
+-++.|+- ..+||-.|-..+.. + ...+...+.++.+.+.++++|-|||..+.
T Consensus 25 ~~l~~F~~~~~~~~~VIKiGG~~l~~-~-------~~~l~~dla~L~~~G~~~VlVHGggpqI~ 80 (398)
T PRK04531 25 QYLKRFSQLDAERFAVIKVGGAVLRD-D-------LEALASSLSFLQEVGLTPIVVHGAGPQLD 80 (398)
T ss_pred HHHHHHhCcCCCcEEEEEEChHHhhc-C-------HHHHHHHHHHHHHCCCcEEEEECCCHHHH
Confidence 34555664 78999999888763 2 36778888899999999999999998765
No 42
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=45.27 E-value=17 Score=31.30 Aligned_cols=72 Identities=11% Similarity=0.263 Sum_probs=36.0
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHH----HHHHHHHhcCCCEEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKFNLPLLVT 295 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~----~~~~~l~~~~~pvl~l 295 (429)
..|.-.+ |.+-..+...+..-+.+ +...+||+||+++|..=.... .....+...+. ++++.++..+ +++++
T Consensus 33 ~~n~~~~-G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~ 107 (179)
T PF13472_consen 33 VYNLGVS-GATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHG-PVILV 107 (179)
T ss_dssp EEEEE-T-T-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEeec-CccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccC-cEEEe
Confidence 3455553 34444555556555444 589999999999996333221 12233333333 3444444444 66655
Q ss_pred c
Q 014167 296 G 296 (429)
Q Consensus 296 g 296 (429)
.
T Consensus 108 ~ 108 (179)
T PF13472_consen 108 S 108 (179)
T ss_dssp E
T ss_pred c
Confidence 3
No 43
>PLN02825 amino-acid N-acetyltransferase
Probab=44.03 E-value=55 Score=35.74 Aligned_cols=63 Identities=13% Similarity=0.286 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchh
Q 014167 234 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (429)
Q Consensus 234 y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~ 304 (429)
|+..|++.. |-+..|+=..+||-.|-.++..+ . ...+..-+.++.+.++++++|-|||..+..
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~---~----~~~l~~DialL~~lGi~~VlVHGggpqI~~ 63 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP---H----LDNILQDISLLHGLGIKFVLVPGTHVQIDK 63 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc---h----HHHHHHHHHHHHHCCCCEEEEcCCCHHHHH
Confidence 456777765 77899999999999998888743 1 234555667788899999999999987753
No 44
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=43.78 E-value=55 Score=29.27 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=29.2
Q ss_pred HHHHhc---CCCEEEEecCCCCCCCCCCCCcccCHHHHH----HHHHHHHh--cCCCEEEE
Q 014167 244 KVVETY---APGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKK--FNLPLLVT 295 (429)
Q Consensus 244 ~i~~~f---~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~----~~~~~l~~--~~~pvl~l 295 (429)
..+..+ +||+||++.|..=..... +.-..+.+.|. .+++.+++ -+.+++++
T Consensus 54 ~~~~~~~~~~pd~vii~~G~ND~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 54 KIFLEEKLAQPDLVTIFFGANDAALPG-QPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HhcCccccCCceEEEEEecCccccCCC-CCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 334445 899999999986443321 00124455444 45566666 35666665
No 45
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.09 E-value=52 Score=29.54 Aligned_cols=49 Identities=10% Similarity=0.388 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc--CCCEEEE
Q 014167 242 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 295 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~--~~pvl~l 295 (429)
+..++...+||+||+..|..=...+. -..+.+..+++.+++. +.|++++
T Consensus 49 ~~~~~~~~~pd~vii~~G~ND~~~~~-----~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 49 VAELLRDVPADLYIIDCGPNIVGAEA-----MVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHHHhcCCCEEEEEeccCCCccHH-----HHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 33455668999999999987432211 1234555666666664 3465543
No 46
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=42.32 E-value=27 Score=33.01 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.5
Q ss_pred HHHhCCcEEEEecccccCC
Q 014167 159 LLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 159 ll~~~~RVl~IDiDvHHGD 177 (429)
|.+++.||++||+|.++||
T Consensus 25 la~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLGKKVLALDADITMAN 43 (251)
T ss_pred HHHCCCeEEEEeCCCCCcc
Confidence 4455689999999998877
No 47
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.19 E-value=49 Score=35.84 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCch
Q 014167 237 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivvq~G~-Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~ 303 (429)
.+++.|..+.+.|+|++|+|..++ -.+.||.++. +++.+..-+.|++.+--.||.-.
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~----------~~~~~~~~~~pvi~v~t~gf~g~ 129 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGN----------LAAAAGLDKSKVIVADVNAYRRK 129 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHH----------HHHHhccCCCcEEEecCCCcccc
Confidence 455667778889999988777765 7777776543 33333222689999988888774
No 48
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=41.95 E-value=62 Score=34.53 Aligned_cols=70 Identities=13% Similarity=0.267 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHHHHHHHHHHHhc-----CCCEEEEcCCCCCchhHHHHHH
Q 014167 237 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGGGYTKENVARCWT 310 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivvq~G~-Ds~~gDplg~~~ls~~g~~~~~~~l~~~-----~~pvl~lggGGY~~~~var~w~ 310 (429)
-+++.|..+.+.|+|++|+|..+. -...||.+ ..+++.++.. +.|++.+--.||.- +....|.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~ 147 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHH
Confidence 344556667788999988665544 77777753 2244444332 68999999999975 4555665
Q ss_pred HHHhhhh
Q 014167 311 VETGILL 317 (429)
Q Consensus 311 ~~t~~ll 317 (429)
.....++
T Consensus 148 ~a~~al~ 154 (455)
T PRK14476 148 AAVEAIV 154 (455)
T ss_pred HHHHHHH
Confidence 5554444
No 49
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=41.53 E-value=1.1e+02 Score=29.46 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 237 LFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
+++.++. .+++-+||+||+ .|| +..+....+.+..+++.+.+++.|++++-|
T Consensus 19 ~le~l~~-~~~~~~~D~vv~-------~GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~G 70 (224)
T cd07388 19 ALEKLVG-LAPETGADAIVL-------IGN-LLPKAAKSEDYAAFFRILGEAHLPTFYVPG 70 (224)
T ss_pred HHHHHHH-HHhhcCCCEEEE-------CCC-CCCCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 4444443 445568998876 245 333444577788888888888899987765
No 50
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.29 E-value=71 Score=27.74 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhc
Q 014167 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKF 288 (429)
Q Consensus 244 ~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~ 288 (429)
..+...+||+||++.|..=... . .+. +.+.++++.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~----~--~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVL----N--RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCccccc----C--CCHHHHHHHHHHHHHHHHHh
Confidence 3445689999999999864322 1 333 3444566666665
No 51
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=40.35 E-value=88 Score=33.12 Aligned_cols=70 Identities=11% Similarity=0.219 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHHHHHHHHHHHh-----cCCCEEEEcCCCCCchhHHHHHH
Q 014167 237 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTKENVARCWT 310 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivvq~G-~Ds~~gDplg~~~ls~~g~~~~~~~l~~-----~~~pvl~lggGGY~~~~var~w~ 310 (429)
-+++.|..+.+.|+|++|+|..+ .....||.+. .+++.++. .++|++.+--.||.- +....|.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~----------~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIA----------RVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCHH----------HHHHHHHhhcccccCCeEEEecCCCcCC-chHHHHH
Confidence 44556667788999998766544 4556777532 24444443 378999999999986 4455555
Q ss_pred HHHhhhh
Q 014167 311 VETGILL 317 (429)
Q Consensus 311 ~~t~~ll 317 (429)
.....++
T Consensus 147 ~a~~al~ 153 (432)
T TIGR01285 147 AAVESII 153 (432)
T ss_pred HHHHHHH
Confidence 4444443
No 52
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=40.30 E-value=1.2e+02 Score=31.46 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHhC--CcEEEEecccccCCccee
Q 014167 150 NDLVLGILELLKYH--ARVLYIDIDVHHGDGVEE 181 (429)
Q Consensus 150 Ndiaiai~~ll~~~--~RVl~IDiDvHHGDGtq~ 181 (429)
.|++-+...+.+.+ +||+ +|.=||||..+
T Consensus 239 ~di~~~~~~l~~~~lp~~vm---VD~SH~ns~k~ 269 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLM---IDFSHGNSNKD 269 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEE---EeCCCcccccc
Confidence 67777665555544 4555 47789998644
No 53
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=39.86 E-value=97 Score=26.08 Aligned_cols=58 Identities=7% Similarity=0.055 Sum_probs=33.1
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh--cCCCEEEEcCCCC
Q 014167 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK--FNLPLLVTGGGGY 300 (429)
Q Consensus 243 ~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~--~~~pvl~lggGGY 300 (429)
...+...+||+||++.|..=....+..........+.++++.+++ -+.+++++.---+
T Consensus 58 ~~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~ 117 (187)
T cd00229 58 RLALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPPPP 117 (187)
T ss_pred hhhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 455678999999999986533222101122333445566666664 3556666544333
No 54
>PLN02512 acetylglutamate kinase
Probab=39.56 E-value=92 Score=31.46 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCch
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~ 303 (429)
-.|...|+++. |-+..|+=..+|+=.|-+++....+ ...+.+-+..+++.+.++++|.|||....
T Consensus 29 ~~~~~~~r~~~-pyi~~~~~~tiVIKlGGs~i~d~~~------~~~~~~di~~l~~~g~~iVlVHGgG~~i~ 93 (309)
T PLN02512 29 LSRVDILSEAL-PFIQRFRGKTVVVKYGGAAMKDPEL------KAGVIRDLVLLSCVGLRPVLVHGGGPEIN 93 (309)
T ss_pred HHHHHHHHHHh-HHHHHHCCCeEEEEECCeeccChhH------HHHHHHHHHHHHHCCCCEEEEECCcHHHH
Confidence 37888999875 7789999999999999777654321 12222333356677889999999987543
No 55
>PRK13236 nitrogenase reductase; Reviewed
Probab=39.46 E-value=32 Score=34.32 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=18.4
Q ss_pred HHHhCCcEEEEecccccCCcceeccc
Q 014167 159 LLKYHARVLYIDIDVHHGDGVEEAFY 184 (429)
Q Consensus 159 ll~~~~RVl~IDiDvHHGDGtq~aF~ 184 (429)
|.++.+|||+||.|.++++ +.-+|.
T Consensus 30 La~~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 30 MAEMGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HHHCCCcEEEEEccCCCCc-cchhcc
Confidence 3345799999999999877 444443
No 56
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=39.04 E-value=1.3e+02 Score=31.80 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK 287 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~ 287 (429)
..+...+|++++.- +.+-+||+||+ +||=.-.-.-|.+....+++.+++
T Consensus 24 ~~D~~~~f~eil~~-a~~~~vD~VLi-------aGDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQI-AKEQDVDMILL-------GGDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHHH-HHHcCCCEEEE-------CCccCCCCCCCHHHHHHHHHHHHH
Confidence 45677889988855 56889999987 356544555677777777777764
No 57
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=38.27 E-value=1.1e+02 Score=32.05 Aligned_cols=73 Identities=16% Similarity=0.326 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCchhHHHHHHHHH
Q 014167 236 RLFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVET 313 (429)
Q Consensus 236 ~~f~~ii~~i~~~f~Pd~Ivvq~G-~Ds~~gDplg~~~ls~~g~~~~~~~l~-~~~~pvl~lggGGY~~~~var~w~~~t 313 (429)
.-+++.|..+.+.|+|++|+|..+ ...+.||.+ ..+++.++ +.+.|++.+--.||.-.+....|....
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi----------~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDV----------ESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccCH----------HHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 355666777888999997766544 344555532 23444444 468999999999998755555665555
Q ss_pred hhhhc
Q 014167 314 GILLD 318 (429)
Q Consensus 314 ~~llg 318 (429)
..++.
T Consensus 145 ~al~~ 149 (426)
T cd01972 145 HGILR 149 (426)
T ss_pred HHHHH
Confidence 55554
No 58
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=37.13 E-value=1.4e+02 Score=29.13 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 235 TRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 235 ~~~f~~ii~~i~~~-f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
...|+.+|..+.+. -+||+||+. ||=.- .-+.+.|..+.+.+++++.|+.++.|
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-------GDl~~--~~~~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-------GDLAQ--DHSSEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-------CCCCC--CCCHHHHHHHHHHHhhcCCcEEEeCC
Confidence 44566777666543 579997762 34211 12467788888899999999877765
No 59
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=36.34 E-value=1.4e+02 Score=28.06 Aligned_cols=58 Identities=10% Similarity=0.210 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 231 DTSFTRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~-f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
+......|+.++..+.+. -+||+||+ + ||=... -+.+.|..+.+.+..+++|++++.|
T Consensus 20 ~~~~~~~l~~~~~~i~~~~~~~d~vi~-~------GDl~~~--~~~~~~~~~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 20 GVDTAASLEAVLAHINALHPRPDLVLV-T------GDLTDD--GSPESYERLRELLAALPIPVYLLPG 78 (240)
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCEEEE-C------ccCCCC--CCHHHHHHHHHHHhhcCCCEEEeCC
Confidence 345556677777665444 38998776 2 342211 2345677777888888999887654
No 60
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=36.24 E-value=1e+02 Score=30.60 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh-cCCCEEEEcCCCCCchhHHHHHHHHHhhhhc
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK-FNLPLLVTGGGGYTKENVARCWTVETGILLD 318 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~-~~~pvl~lggGGY~~~~var~w~~~t~~llg 318 (429)
..+...++.+.+|.|+++--.=...-|+ +.++.+++ ...|++ .|+|=|..|+.+.+.+.=+++.|
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~TG~~~~~------------~~l~~vr~~~~~PVl--vGSGvt~~Ni~~~l~~ADG~IVG 227 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKATGEPPDP------------EKLKRVREAVPVPVL--VGSGVTPENIAEYLSYADGAIVG 227 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcccCCCCCH------------HHHHHHHhcCCCCEE--EecCCCHHHHHHHHHhCCEEEEe
Confidence 4455667889999999853322222221 23344444 355665 69999999999999887778888
Q ss_pred C
Q 014167 319 T 319 (429)
Q Consensus 319 ~ 319 (429)
.
T Consensus 228 S 228 (254)
T PF03437_consen 228 S 228 (254)
T ss_pred e
Confidence 4
No 61
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=36.17 E-value=11 Score=37.29 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCEEEEecCC---CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEE
Q 014167 242 ISKVVETYAPGAIVLQCGA---DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G~---Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~l 295 (429)
+..+++.++||+||..+|. |....+|-..+.+...+-..+.+.++..+.|++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 4455677899999999876 34444665566666677777888888888888754
No 62
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=36.11 E-value=1.8e+02 Score=28.89 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=46.1
Q ss_pred cceeccccCCCEEEEeecccCCCCCCC-CCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHHHHHHHh---cCCCE
Q 014167 178 GVEEAFYFTDRVMTVSFHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVET---YAPGA 253 (429)
Q Consensus 178 Gtq~aF~~d~~VltiSiH~~g~~ffPg-tG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~---f~Pd~ 253 (429)
+--.+|+-|.|+.-++- .+.+ +=+. .+.++.+-.-...-|.+|--|.. +.++=...++..+...+.. =+-|+
T Consensus 70 ~kW~if~~DER~Vp~~~-~dSN-yg~~~~~~l~~v~~~~~~i~~id~~L~~--~~~~~a~~ye~~l~~~v~~~s~p~FDL 145 (252)
T KOG3147|consen 70 SKWHIFFVDERVVPLDD-PDSN-YGLAKRHFLSKVPIPHYNIYPIDESLIA--DAEEAADLYEKELKALVANDSFPVFDL 145 (252)
T ss_pred cceEEEEEeccccCCCC-Cccc-HHHHHHhhhhhCCCCcCcEEECChhhcc--CHHHHHHHHHHHHHHHhccCCCcceeE
Confidence 66678999988877663 2211 1000 12222222222234677777764 2333333344444333333 24699
Q ss_pred EEEecCCCCCCCC
Q 014167 254 IVLQCGADSLAGD 266 (429)
Q Consensus 254 Ivvq~G~Ds~~gD 266 (429)
+++-||.|+|..-
T Consensus 146 ~LLG~GpDGHtaS 158 (252)
T KOG3147|consen 146 LLLGMGPDGHTAS 158 (252)
T ss_pred EEeccCCCCCeee
Confidence 9999999999765
No 63
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.80 E-value=1.5e+02 Score=25.73 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=32.9
Q ss_pred hcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhH
Q 014167 248 TYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 305 (429)
Q Consensus 248 ~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~v 305 (429)
..++|.||+.+| |+ +|...++.+++.+.++++++-.+.....+
T Consensus 97 ~~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~s~~L 139 (149)
T cd06167 97 KRRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKTSREL 139 (149)
T ss_pred hcCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccChHHH
Confidence 338999999998 44 46678999999999999988775544433
No 64
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=34.62 E-value=22 Score=28.93 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=42.2
Q ss_pred cCCCCCCCCCCCC-cccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHH
Q 014167 258 CGADSLAGDRLGC-FNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWT 310 (429)
Q Consensus 258 ~G~Ds~~gDplg~-~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~ 310 (429)
++-+.+.|+.|+. +.+|-...+++++.|++.+.++..+-+=||.+......+.
T Consensus 15 ~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ll~ 68 (79)
T COG1654 15 LTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPDLLP 68 (79)
T ss_pred cCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccccCc
Confidence 4445566777664 7889999999999999999999999998999876555443
No 65
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=34.56 E-value=1.3e+02 Score=32.28 Aligned_cols=70 Identities=7% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhc-CCCEE-EEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh---------cCCCEEEEcCCCCCchhHH
Q 014167 238 FKTIISKVVETY-APGAI-VLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK---------FNLPLLVTGGGGYTKENVA 306 (429)
Q Consensus 238 f~~ii~~i~~~f-~Pd~I-vvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~---------~~~pvl~lggGGY~~~~va 306 (429)
+++.|..+.+.| +|++| |++++.....||.+. .+++.++. .+.|++.+--+||.- +..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~----------~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g-s~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVD----------GLISKLNEELLKEKFPDREVHLIPIHTPSFVG-SMI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHH----------HHHHHHHhhhcccccCCCCCeEEEeeCCCCCC-cHH
Confidence 566777888899 59986 667777788887532 24444332 256899999999987 445
Q ss_pred HHHHHHHhhhhc
Q 014167 307 RCWTVETGILLD 318 (429)
Q Consensus 307 r~w~~~t~~llg 318 (429)
..|...+..++.
T Consensus 149 ~Gy~~a~~ali~ 160 (461)
T TIGR02931 149 TGYDVAVHDFVK 160 (461)
T ss_pred HHHHHHHHHHHH
Confidence 666655555554
No 66
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=33.84 E-value=1.3e+02 Score=27.58 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=37.2
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhcCCCEEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~~~pvl~l 295 (429)
.+|.-+...++. ..+..|. ..+..++||+||++.|..=.. . .++. +.+..+++.+++.+.+++++
T Consensus 46 v~N~Gi~G~tt~-~~~~rl~----~~l~~~~pd~Vii~~GtND~~----~--~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 46 VVNASISGDTSQ-QGLARLP----ALLKQHQPRWVLVELGGNDGL----R--GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred EEecCcCcccHH-HHHHHHH----HHHHhcCCCEEEEEeccCcCc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 566655443332 3334444 344567999999999975432 2 2455 34445666677665555444
No 67
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.97 E-value=94 Score=32.17 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEE-ecCCCCCCCCCCCCcccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCchhHHHHHHHHH
Q 014167 236 RLFKTIISKVVETYAPGAIVL-QCGADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVET 313 (429)
Q Consensus 236 ~~f~~ii~~i~~~f~Pd~Ivv-q~G~Ds~~gDplg~~~ls~~g~~~~~~~l~-~~~~pvl~lggGGY~~~~var~w~~~t 313 (429)
.-+++.|..+.+.|+|++|+| ++......||.+ ..+++.++ +.+.|++.+--.||.-.+....|....
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~ 142 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDI----------EAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIAN 142 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccCH----------HHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHH
Confidence 356666777888999997655 444455666642 22444443 357899999988887755545555444
Q ss_pred hhhh
Q 014167 314 GILL 317 (429)
Q Consensus 314 ~~ll 317 (429)
..++
T Consensus 143 ~al~ 146 (406)
T cd01967 143 DAIL 146 (406)
T ss_pred HHHH
Confidence 4433
No 68
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=32.51 E-value=1.5e+02 Score=31.27 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCCEEE-EecCCCCCCCCCCCCcccCHHHHHHHHHHHHh----cCCCEEEEcCCCCCchhHHHHHHH
Q 014167 237 LFKTIISKVVETYAPGAIV-LQCGADSLAGDRLGCFNLSIDGHAECVRFVKK----FNLPLLVTGGGGYTKENVARCWTV 311 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Iv-vq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~----~~~pvl~lggGGY~~~~var~w~~ 311 (429)
-+++.|..+.+.|+|++|+ +++......||.+ ..+++.++. .+.|++.+--.||.- +....|..
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi----------~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~ 139 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGEDV----------PRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDT 139 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCH----------HHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHH
Confidence 4555666788889999754 4555566666642 234554544 367999998999974 44456655
Q ss_pred HHhhhhc
Q 014167 312 ETGILLD 318 (429)
Q Consensus 312 ~t~~llg 318 (429)
....++.
T Consensus 140 a~~al~~ 146 (429)
T cd03466 140 AVRSIVK 146 (429)
T ss_pred HHHHHHH
Confidence 5555554
No 69
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.28 E-value=2.3e+02 Score=28.77 Aligned_cols=99 Identities=15% Similarity=0.250 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCC-------------------CCcc----cCHHHHHHHHHHHH
Q 014167 230 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRL-------------------GCFN----LSIDGHAECVRFVK 286 (429)
Q Consensus 230 ~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDpl-------------------g~~~----ls~~g~~~~~~~l~ 286 (429)
+-+..-.+.+.++....+ ..-+++-+.-|+..+..+.+ |.-+ .+.+.+.++++.++
T Consensus 10 ~apG~Na~i~~vv~~a~~-~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~ 88 (301)
T TIGR02482 10 DAPGMNAAIRAVVRTAIY-HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEEGRQKAVENLK 88 (301)
T ss_pred CcHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHHHHHHHHHHHH
Confidence 344555666666665544 36678888888887765421 2111 14567788999999
Q ss_pred hcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcC--CCCCCCCCch
Q 014167 287 KFNLPLLVTGGGGYTKENVARCWTVETGILLDT--ELPNEIPENE 329 (429)
Q Consensus 287 ~~~~pvl~lggGGY~~~~var~w~~~t~~llg~--~~~~~lP~~~ 329 (429)
++++..|++.||-=+.+...+.+.+.---+.|. .+.++||..+
T Consensus 89 ~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td 133 (301)
T TIGR02482 89 KLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTD 133 (301)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcc
Confidence 999999999999888776666554311112232 2556666443
No 70
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=32.08 E-value=70 Score=26.96 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=27.8
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCC--CEEEEcCCCCC
Q 014167 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL--PLLVTGGGGYT 301 (429)
Q Consensus 244 ~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~--pvl~lggGGY~ 301 (429)
..+.+.+||+|.+++-.+. +.....++++.+++.+. ..+++||...+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~-----------~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTT-----------HMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 4456889999999765222 22334567777777643 34455444443
No 71
>CHL00175 minD septum-site determining protein; Validated
Probab=31.90 E-value=49 Score=32.32 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=16.4
Q ss_pred HHHhCCcEEEEecccccCCcc
Q 014167 159 LLKYHARVLYIDIDVHHGDGV 179 (429)
Q Consensus 159 ll~~~~RVl~IDiDvHHGDGt 179 (429)
|.+..+||++||.|.+.||-.
T Consensus 40 La~~g~~vlliD~D~~~~~l~ 60 (281)
T CHL00175 40 IARLGYRVALIDADIGLRNLD 60 (281)
T ss_pred HHhCCCeEEEEeCCCCCCChh
Confidence 334568999999999988743
No 72
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=31.43 E-value=1.7e+02 Score=29.75 Aligned_cols=103 Identities=23% Similarity=0.354 Sum_probs=60.8
Q ss_pred HHHHHHHhC-C-cEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChH
Q 014167 155 GILELLKYH-A-RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDT 232 (429)
Q Consensus 155 ai~~ll~~~-~-RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~ 232 (429)
++.++.+.. + ||.+|+-|-=.|.|..++|... +...| ++ -.+..+..++..|
T Consensus 138 ~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~-------l~~~G-----------------~~-~~~~~~~~~~~~~- 191 (366)
T COG0683 138 AADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAA-------LKALG-----------------GE-VVVEEVYAPGDTD- 191 (366)
T ss_pred HHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHH-------HHhCC-----------------Ce-EEEEEeeCCCCCC-
Confidence 445666554 4 9999999999999999998641 11111 11 1222344444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchh
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~ 304 (429)
|..++.+ +.+.+||+|++..-.+.. ..+++.+++.+..-.+++++|-....
T Consensus 192 -----~~~~v~~-i~~~~~d~v~~~~~~~~~---------------~~~~r~~~~~G~~~~~~~~~~~~~~~ 242 (366)
T COG0683 192 -----FSALVAK-IKAAGPDAVLVGGYGPDA---------------ALFLRQAREQGLKAKLIGGDGAGTAE 242 (366)
T ss_pred -----hHHHHHH-HHhcCCCEEEECCCCccc---------------hHHHHHHHHcCCCCccccccccCchh
Confidence 6666655 467899976664332111 13777788877766555555544433
No 73
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=31.20 E-value=22 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.415 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhcCC
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNL 290 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~~~ 290 (429)
+++..+.++|+-++=|++++.|...+.|+|.+-+.. ....+...++++.++
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 578899999999999999999999999999987755 334566777776554
No 74
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=31.16 E-value=97 Score=32.50 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCch
Q 014167 237 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivvq~G-~Ds~~gDplg~~~ls~~g~~~~~~~l~-~~~~pvl~lggGGY~~~ 303 (429)
-++..|..+.+.|+|++|+|... .....||.+. .+++.++ +.+.|++.+--.||.-.
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~----------~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDLQ----------NFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCHH----------HHHHHhhhccCCCeEEecCCCccch
Confidence 34455667788899998776655 6666776532 2444343 35889999999998864
No 75
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=31.04 E-value=1.3e+02 Score=27.28 Aligned_cols=45 Identities=4% Similarity=0.037 Sum_probs=26.3
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccCHHHHH----HHHHHHHhcCCCEEEE
Q 014167 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKFNLPLLVT 295 (429)
Q Consensus 250 ~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~----~~~~~l~~~~~pvl~l 295 (429)
+||+||++.|..=..... .....+.+.|. ++++.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~-~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKD-PEYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999975433211 11134444444 4566667666665554
No 76
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.97 E-value=90 Score=32.86 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCEEEE-ecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchh
Q 014167 237 LFKTIISKVVETYAPGAIVL-QCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivv-q~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~ 304 (429)
-+++.|..+.++|+|++|+| ++......||.+ ..+++.+++.+.|++.+--.||.-..
T Consensus 73 kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi----------~~v~~~~~~~~~~vi~v~t~gf~g~~ 131 (427)
T cd01971 73 RLRELIKSTLSIIDADLFVVLTGCIAEIIGDDV----------GAVVSEFQEGGAPIVYLETGGFKGNN 131 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCH----------HHHHHHhhhcCCCEEEEECCCcCccc
Confidence 34455667788899997554 455566666642 22444445567899998888888743
No 77
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=30.66 E-value=54 Score=29.04 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.5
Q ss_pred HHHHhCCcEEEEecccccCC
Q 014167 158 ELLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 158 ~ll~~~~RVl~IDiDvHHGD 177 (429)
.|.++..||++||.|...|+
T Consensus 23 ~l~~~g~~vllvD~D~~~~~ 42 (179)
T cd02036 23 ALAQLGYKVVLIDADLGLRN 42 (179)
T ss_pred HHHhCCCeEEEEeCCCCCCC
Confidence 34456789999999998665
No 78
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=30.29 E-value=98 Score=26.31 Aligned_cols=28 Identities=7% Similarity=0.158 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCC
Q 014167 235 TRLFKTIISKVVETYAPGAIVLQCGADS 262 (429)
Q Consensus 235 ~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds 262 (429)
...+...|..++++++|++|+.-...|.
T Consensus 85 ~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 85 WEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3344455778889999999999888777
No 79
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.00 E-value=1.4e+02 Score=32.53 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCC-CCCCCCCCCcccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCchhH
Q 014167 236 RLFKTIISKVVETYAPGAIVLQCGAD-SLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENV 305 (429)
Q Consensus 236 ~~f~~ii~~i~~~f~Pd~Ivvq~G~D-s~~gDplg~~~ls~~g~~~~~~~l~-~~~~pvl~lggGGY~~~~v 305 (429)
..+...|..+.+.|+|++|+|..++= .+.||.+ ..+++.++ ..+.|++.+--.||.-...
T Consensus 71 ~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi----------~~v~~~~~~~~~~pVi~v~t~~f~g~~~ 132 (513)
T CHL00076 71 EKVVDNITRKDKEERPDLIVLTPTCTSSILQEDL----------QNFVDRASIESDSDVILADVNHYRVNEL 132 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCchhhhhcCH----------HHHHHHhhcccCCCEEEeCCCCCcccHH
Confidence 34555666788999999999876532 2233322 23444443 3578999999999987543
No 80
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=29.70 E-value=2.1e+02 Score=30.60 Aligned_cols=69 Identities=9% Similarity=0.164 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhc-CCCEEEEecCC-CCCCCCCCCCcccCHHHHHHHHHHHH--------hcCCCEEEEcCCCCCchhHHH
Q 014167 238 FKTIISKVVETY-APGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK--------KFNLPLLVTGGGGYTKENVAR 307 (429)
Q Consensus 238 f~~ii~~i~~~f-~Pd~Ivvq~G~-Ds~~gDplg~~~ls~~g~~~~~~~l~--------~~~~pvl~lggGGY~~~~var 307 (429)
+++.|..+.+.| +|++|+|..+. =...||.+. .+++.++ +.+.|++.+--+||.- +...
T Consensus 74 L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~----------~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G-s~~~ 142 (454)
T cd01973 74 VEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIE----------GVIRKLNEALKEEFPDREVHLIPVHTPSFKG-SMVT 142 (454)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHhhhccCHH----------HHHHHHHhhhhhccCCCCCeEEEeeCCCcCC-CHHH
Confidence 445566778889 69987665553 455555422 2333332 1268999999999986 4445
Q ss_pred HHHHHHhhhh
Q 014167 308 CWTVETGILL 317 (429)
Q Consensus 308 ~w~~~t~~ll 317 (429)
.|...+..++
T Consensus 143 G~~~a~~ali 152 (454)
T cd01973 143 GYDEAVRSVV 152 (454)
T ss_pred HHHHHHHHHH
Confidence 6655554444
No 81
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=29.44 E-value=1.2e+02 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEE
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVL 256 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivv 256 (429)
|.....-+...+...+.+++|++|+|
T Consensus 44 ~~~~~~~~~~~l~~~i~~~kP~vI~v 69 (150)
T PF14639_consen 44 DRERKEEDMERLKKFIEKHKPDVIAV 69 (150)
T ss_dssp -SS-SHHHHHHHHHHHHHH--SEEEE
T ss_pred chHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 33333444445556677899999999
No 82
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=28.68 E-value=2.5e+02 Score=29.75 Aligned_cols=121 Identities=20% Similarity=0.339 Sum_probs=69.4
Q ss_pred ccccCCcceecccc---------CCCEEEEeecccCCCCCCCC-CCCcccC-------CCCCcceEEeccCCCCCChHHH
Q 014167 172 DVHHGDGVEEAFYF---------TDRVMTVSFHKFGDLFFPGT-GDVKEIG-------EREGKFYAINVPLKDGIDDTSF 234 (429)
Q Consensus 172 DvHHGDGtq~aF~~---------d~~VltiSiH~~g~~ffPgt-G~~~~~G-------~g~G~~~~vNvPL~~g~~D~~y 234 (429)
-.|+|-|-|.+.+. -.++|++- .+.+|--| |.....| ...+.-+.+|.|.+..++=+
T Consensus 99 PthQGRgAE~Il~~i~ik~~~~~pg~~~~~~----sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~-- 172 (471)
T COG3033 99 PTHQGRGAENILIPILIKKGEQEPGSKMVAF----SNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLE-- 172 (471)
T ss_pred eccCCccHHHHHHHHHhhhccccCCcccccc----ccceecchhHHHHhcCCccccccccccccccccCCCCCccCHH--
Confidence 48999999888764 12333321 23455543 3322222 12233344555555444322
Q ss_pred HHHHHHHHHHHHHhcCCC---EEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEE-------------cCC
Q 014167 235 TRLFKTIISKVVETYAPG---AIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT-------------GGG 298 (429)
Q Consensus 235 ~~~f~~ii~~i~~~f~Pd---~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~l-------------ggG 298 (429)
-+++++++-.+| .|++.--..+..|.| +|++-..+.-++.+..++|+++= -+-
T Consensus 173 ------kLe~lidevG~~nvp~I~~tiT~NsagGQp-----VSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~ 241 (471)
T COG3033 173 ------KLERLIDEVGADNVPYIVLTITNNSAGGQP-----VSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREP 241 (471)
T ss_pred ------HHHHHHHHhCcccCcEEEEEEeccccCCCc-----chHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCc
Confidence 233444555566 677777777777777 56666677888888899998763 366
Q ss_pred CCCchhHHHHH
Q 014167 299 GYTKENVARCW 309 (429)
Q Consensus 299 GY~~~~var~w 309 (429)
||...+++...
T Consensus 242 gYrd~sI~~Ia 252 (471)
T COG3033 242 GYRDWSIEEIA 252 (471)
T ss_pred ccccccHHHHH
Confidence 77766555443
No 83
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=28.43 E-value=3.4e+02 Score=26.93 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc-CCCEEEEcCCCCCchhHHHHHHHHHhhh
Q 014167 238 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGIL 316 (429)
Q Consensus 238 f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~-~~pvl~lggGGY~~~~var~w~~~t~~l 316 (429)
+.+.+...++.+-||+|+++-=.-+..-|+ +-++.++.. ..|+ +-|-|-+.+|+...|.+.-..+
T Consensus 165 ~~~~v~dtver~~aDaVI~tG~~TG~~~d~------------~el~~a~~~~~~pv--lvGSGv~~eN~~~~l~~adG~I 230 (263)
T COG0434 165 LEEAVKDTVERGLADAVIVTGSRTGSPPDL------------EELKLAKEAVDTPV--LVGSGVNPENIEELLKIADGVI 230 (263)
T ss_pred HHHHHHHHHHccCCCEEEEecccCCCCCCH------------HHHHHHHhccCCCE--EEecCCCHHHHHHHHHHcCceE
Confidence 345666778899999999864433344332 233444443 4555 4599999999999999877888
Q ss_pred hcCC
Q 014167 317 LDTE 320 (429)
Q Consensus 317 lg~~ 320 (429)
.|..
T Consensus 231 vgT~ 234 (263)
T COG0434 231 VGTS 234 (263)
T ss_pred EEEE
Confidence 8743
No 84
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=28.36 E-value=1.3e+02 Score=29.90 Aligned_cols=93 Identities=20% Similarity=0.254 Sum_probs=47.6
Q ss_pred HHHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEecc-CCCCCChHHHHH
Q 014167 158 ELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVP-LKDGIDDTSFTR 236 (429)
Q Consensus 158 ~ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvP-L~~g~~D~~y~~ 236 (429)
-+..+.+||++||.|+=-|| ....|--.+.-.| +|.+ .=+.-.+.|+=...+. -||- ||.+.+-+++..
T Consensus 27 ~~~~~~k~V~~iDaD~g~~n-L~~~~g~~~~~~~--l~dv----L~~~~~~~Di~~~~~~---~gl~vipg~~~~~~~~~ 96 (262)
T COG0455 27 LAALGGKVVLLIDADLGLGN-LSLLLGVESKPTT--LHDV----LAGEASIEDIIYETPQ---DGLYVLPGGSGLEDLAK 96 (262)
T ss_pred HHhhCCCeEEEEecCCCCCc-HHHHhCCCCCccc--HHHH----HhCCCCHhHeeeecCc---CCEEEeeCCCChHHHhh
Confidence 33445688899999996665 1122222222222 4432 1122233332211110 2232 466777777765
Q ss_pred HHH----HHHHHHHHhcCCCEEEEecCCCC
Q 014167 237 LFK----TIISKVVETYAPGAIVLQCGADS 262 (429)
Q Consensus 237 ~f~----~ii~~i~~~f~Pd~Ivvq~G~Ds 262 (429)
+.. .++..+.+.+ |+||+-||+-.
T Consensus 97 ~~~~~~~~~~~~l~~~~--D~iliD~~aGl 124 (262)
T COG0455 97 LDPEDLEDVIKELEELY--DYILIDTGAGL 124 (262)
T ss_pred cCHHHHHHHHHHHHhcC--CEEEEeCCCCc
Confidence 443 4555555555 99999998543
No 85
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=27.88 E-value=1.9e+02 Score=23.69 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=32.5
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHhcCCC-EEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 223 VPLKDGIDDTSFTRLFKTIISKVVETYAPG-AIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 223 vPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd-~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
|=+|+|++|.. +.+++ ....+ +|||..-- .++...-.+.+.++++.++|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~--------~~~~~g~ivVTTPq-----------~la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQ--------YLPIDGAIVVTTPQ-----------ELALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHH--------HH--SEEEEEE-CC-----------C--HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHH--------hCCCCeEEEEeCCH-----------HHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 45789998864 33333 33344 67776542 35666777889999999999997754
No 86
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=27.46 E-value=70 Score=26.64 Aligned_cols=15 Identities=47% Similarity=0.879 Sum_probs=14.0
Q ss_pred CCcEEEEecccccCC
Q 014167 163 HARVLYIDIDVHHGD 177 (429)
Q Consensus 163 ~~RVl~IDiDvHHGD 177 (429)
..+|+.||.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 789999999999987
No 87
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.33 E-value=1.8e+02 Score=30.60 Aligned_cols=69 Identities=12% Similarity=0.239 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCEEE-EecCCCCCCCCCCCCcccCHHHHHHHHHHHHh-----cCCCEEEEcCCCCCchhHHHHHH
Q 014167 237 LFKTIISKVVETYAPGAIV-LQCGADSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTKENVARCWT 310 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Iv-vq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~-----~~~pvl~lggGGY~~~~var~w~ 310 (429)
-+++.|..+.+.++|++|+ +++....+.||.+ ..+++.++. .+.|++.+--.||.-. ....|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi----------~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~-~~~G~~ 136 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDDV----------AGFIKEFRAEGPEPADFPVVYASTPSFKGS-HETGYD 136 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCCH----------HHHHHHHHhhccCCCCCeEEEeeCCCCCCc-HHHHHH
Confidence 3445566777889999654 4555566666643 224444442 4678888877777742 234444
Q ss_pred HHHhhh
Q 014167 311 VETGIL 316 (429)
Q Consensus 311 ~~t~~l 316 (429)
.....+
T Consensus 137 ~a~~al 142 (428)
T cd01965 137 NAVKAI 142 (428)
T ss_pred HHHHHH
Confidence 443333
No 88
>PRK10818 cell division inhibitor MinD; Provisional
Probab=27.33 E-value=67 Score=31.04 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.5
Q ss_pred HhCCcEEEEecccccCC
Q 014167 161 KYHARVLYIDIDVHHGD 177 (429)
Q Consensus 161 ~~~~RVl~IDiDvHHGD 177 (429)
++.+||++||+|.+.||
T Consensus 29 ~~g~~vllvD~D~~~~~ 45 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRN 45 (270)
T ss_pred HCCCeEEEEECCCCCCC
Confidence 45689999999998776
No 89
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=27.11 E-value=3.1e+02 Score=25.41 Aligned_cols=88 Identities=28% Similarity=0.376 Sum_probs=54.1
Q ss_pred cEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHHHH
Q 014167 165 RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISK 244 (429)
Q Consensus 165 RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~ 244 (429)
|+|.+||-+.-..|-.++ ..+.|+.||+..... . ...+. ..+.+..+.+..|-.+
T Consensus 4 ~~l~fDIEt~~~~gfp~~--~~d~Ii~Is~~~~~g-------~----------~~~~~---~~~~~E~~lL~~F~~~--- 58 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNP--RRDPIIVISLATSNG-------D----------VEFIL---AEGLDDRKIIREFVKY--- 58 (188)
T ss_pred eEEEEEEEecCCCCCCCC--CCCCEEEEEEEeCCC-------C----------EEEEE---ecCCCHHHHHHHHHHH---
Confidence 899999998855553222 347899999864211 0 01111 2345677777777654
Q ss_pred HHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCE
Q 014167 245 VVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPL 292 (429)
Q Consensus 245 i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pv 292 (429)
+++++||+|+ |+.+..-| ..-+.+.++.+++++
T Consensus 59 -i~~~dPd~i~---gyN~~~FD-----------lpyl~~Ra~~~gi~~ 91 (188)
T cd05781 59 -VKEYDPDIIV---GYNSNAFD-----------WPYLVERARVLGVKL 91 (188)
T ss_pred -HHHcCCCEEE---ecCCCcCc-----------HHHHHHHHHHhCCCc
Confidence 5679999887 66555544 233556666666664
No 90
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.02 E-value=1.3e+02 Score=32.43 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 014167 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300 (429)
Q Consensus 243 ~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY 300 (429)
...+.+++||+|.+++ +..+...-.++++.+|+....+.+|.||..
T Consensus 56 ~~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 56 VERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 3456778999999964 222333344567777776444444445543
No 91
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=27.01 E-value=1.9e+02 Score=27.15 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCccc--C-HHHHHHHHHHHHhcCCCEEEEcCCCCCch
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNL--S-IDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~l--s-~~g~~~~~~~l~~~~~pvl~lggGGY~~~ 303 (429)
+.+.+.+.+++-|++++-.--=....|-+-++.- + -..+..|.++|...+.|.+++-|-||-.+
T Consensus 104 P~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~~y~eR 170 (187)
T COG3172 104 PFLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGEDYLER 170 (187)
T ss_pred chHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCCCHHHH
Confidence 3467788899999988866554455554444332 2 23566789999999999998877799754
No 92
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=26.92 E-value=24 Score=32.44 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred cCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCC
Q 014167 249 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGG 299 (429)
Q Consensus 249 f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGG 299 (429)
-++|+||+ |-+|.+.+...+|.+.+..+..-+.|+|.++--.
T Consensus 94 ~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 94 SSSDLIVI---------DEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HCCHEEEE------------STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred CCCCEEEE---------eccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 58899998 9999999999999999988888788888876544
No 93
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=26.79 E-value=1e+02 Score=33.20 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC-CCCCCCCCcccCHHHHHHHHHHH-HhcCCCEEEEcCCCCC
Q 014167 238 FKTIISKVVETYAPGAIVLQCGADS-LAGDRLGCFNLSIDGHAECVRFV-KKFNLPLLVTGGGGYT 301 (429)
Q Consensus 238 f~~ii~~i~~~f~Pd~Ivvq~G~Ds-~~gDplg~~~ls~~g~~~~~~~l-~~~~~pvl~lggGGY~ 301 (429)
++.++..+++.|+|++|+|..++=+ +.|| .++ .+.+.+ ++.++||+.+-..|+.
T Consensus 85 L~~~i~ei~~~~~p~~ifv~~TC~t~iIGd-------Dle---~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 85 LKRLCLQIKKDRNPSVIVWIGTCTTEIIKM-------DLE---GMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCcHHhhcc-------CHH---HHHHHHHHhhCCCEEEEeCCCcc
Confidence 4456778899999999999776421 2222 222 233333 3569999999999987
No 94
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.63 E-value=3.1e+02 Score=26.63 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHH---HHHHHHHHHhcC-CCEEEEcC
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG---HAECVRFVKKFN-LPLLVTGG 297 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g---~~~~~~~l~~~~-~pvl~lgg 297 (429)
+....|+.++. .+.+.+||+||+. ||=.-..+-+... +.+.++.+++.+ +|++++.|
T Consensus 23 ~~~~~l~~l~~-~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~G 83 (253)
T TIGR00619 23 EQKAFLDDLLE-FAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISG 83 (253)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 34556776664 4566799998873 4433333333322 334455555555 88888765
No 95
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=26.00 E-value=1.6e+02 Score=27.69 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=26.7
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCC
Q 014167 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL 290 (429)
Q Consensus 243 ~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~ 290 (429)
...+++.+||+|.+|+-... +.....+.++.+++.+.
T Consensus 128 v~~~~~~~pd~v~lS~~~~~-----------~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 128 VEKVKKEKPLMLTGSALMTT-----------TMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHcCCCEEEEcccccc-----------CHHHHHHHHHHHHHcCC
Confidence 35678899999999875333 34456778888888744
No 96
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=25.87 E-value=89 Score=30.60 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=32.2
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 014167 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 301 (429)
Q Consensus 250 ~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~ 301 (429)
.+|+||+. -|.-+.++.|++.|+. .++++++.++.+.+..+|| |.
T Consensus 83 ~~Dliil~--Gd~Q~~~~~gqyel~~----~~Ld~a~e~g~~~IyTLGG-y~ 127 (258)
T COG2047 83 ERDLIILV--GDTQATSSEGQYELTG----KILDIAKEFGARMIYTLGG-YG 127 (258)
T ss_pred CCcEEEEe--ccccccCcchhHHHHH----HHHHHHHHcCCcEEEEecC-cc
Confidence 35777763 4666677788887753 5677888999998888854 54
No 97
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=25.60 E-value=51 Score=29.67 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.6
Q ss_pred CcEEEEecccccCC
Q 014167 164 ARVLYIDIDVHHGD 177 (429)
Q Consensus 164 ~RVl~IDiDvHHGD 177 (429)
+||++||.|.+.++
T Consensus 25 ~~vlliD~D~~~~~ 38 (179)
T cd03110 25 KNVVLADCDVDAPN 38 (179)
T ss_pred hCcEEEECCCCCCc
Confidence 69999999999866
No 98
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=25.24 E-value=37 Score=28.43 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=17.7
Q ss_pred HHHHHHHhCCcEEEEecccccCCc
Q 014167 155 GILELLKYHARVLYIDIDVHHGDG 178 (429)
Q Consensus 155 ai~~ll~~~~RVl~IDiDvHHGDG 178 (429)
.++.-.++-+||||.|+-+-.|||
T Consensus 53 ~al~ss~rm~~~l~md~sitkg~g 76 (111)
T PF02484_consen 53 NALISSNRMQQVLFMDMSITKGDG 76 (111)
T ss_pred HHHHhhHHHHhhhheeeeEecCcc
Confidence 333333455899999999999987
No 99
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.79 E-value=1.7e+02 Score=26.72 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred hcCCCEEEEecCC-CCCCCCCCCCcccCHHHH----HHHHHHHHhc
Q 014167 248 TYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGH----AECVRFVKKF 288 (429)
Q Consensus 248 ~f~Pd~Ivvq~G~-Ds~~gDplg~~~ls~~g~----~~~~~~l~~~ 288 (429)
..+||+||+..|. |... .++.+..-| .++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999998 4432 233445444 4556666664
No 100
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=24.64 E-value=70 Score=31.87 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.4
Q ss_pred HHHhCCcEEEEecccccCC
Q 014167 159 LLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 159 ll~~~~RVl~IDiDvHHGD 177 (429)
|.+.++|||+||.|.++.+
T Consensus 28 la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 28 LVEMGQKILIVGCDPKADS 46 (295)
T ss_pred HHHCCCeEEEEeccccccc
Confidence 4456799999999998655
No 101
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=24.47 E-value=4.5e+02 Score=26.95 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCC-------------------CC--ccc--CHHHHHHHHHHHH
Q 014167 230 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRL-------------------GC--FNL--SIDGHAECVRFVK 286 (429)
Q Consensus 230 ~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDpl-------------------g~--~~l--s~~g~~~~~~~l~ 286 (429)
.-+..-.+++.++..+.+ ...+++-+.-|+.++..+.+ |. +.. +.+++.++++.++
T Consensus 11 ~apG~N~~i~~~v~~~~~-~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~ 89 (338)
T cd00363 11 DAPGMNAAIRGVVRSAIA-EGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTEEGRAKAAENLK 89 (338)
T ss_pred CchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCHHHHHHHHHHHH
Confidence 344555667777766544 46788888889988876631 21 233 5567888999999
Q ss_pred hcCCCEEEEcCCCCCchhHHHHHHH
Q 014167 287 KFNLPLLVTGGGGYTKENVARCWTV 311 (429)
Q Consensus 287 ~~~~pvl~lggGGY~~~~var~w~~ 311 (429)
+.++..|++.||-=+.+.+.+...+
T Consensus 90 ~~~I~~Lv~IGGd~s~~~a~~L~e~ 114 (338)
T cd00363 90 KHGIDALVVIGGDGSYTGADLLTEE 114 (338)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 9999999999998777666555554
No 102
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.39 E-value=77 Score=31.93 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=32.1
Q ss_pred ccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHH
Q 014167 272 NLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWT 310 (429)
Q Consensus 272 ~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~ 310 (429)
|++++...++++.+++.+..+.+.--||=|..|++....
T Consensus 224 n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~ 262 (288)
T PRK07428 224 NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAE 262 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 788899999999988766666777789999999877653
No 103
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=24.04 E-value=1.6e+02 Score=27.39 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCC
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGC 270 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~ 270 (429)
|..-...+...+...+....-++||++-|.|-..||-||-
T Consensus 5 ~~~a~~~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGP 44 (163)
T PF06866_consen 5 DKNAPEKLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGP 44 (163)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEECCCCCccccccc
Confidence 4444444555555555555778999999999999998875
No 104
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=23.70 E-value=85 Score=29.68 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=15.4
Q ss_pred HHHHhCCcEEEEecccccCC
Q 014167 158 ELLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 158 ~ll~~~~RVl~IDiDvHHGD 177 (429)
.|.+++.||++||.|...||
T Consensus 25 ~la~~g~~vlliD~D~~~~~ 44 (261)
T TIGR01968 25 ALARLGKKVVLIDADIGLRN 44 (261)
T ss_pred HHHHcCCeEEEEECCCCCCC
Confidence 34455789999999997665
No 105
>PRK00942 acetylglutamate kinase; Provisional
Probab=23.66 E-value=2.8e+02 Score=27.28 Aligned_cols=63 Identities=16% Similarity=0.371 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCc
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~ 302 (429)
.....|++.. |-+..|+=..||+-.|-.++..... .....+.+..+++.+.++++|-|||-..
T Consensus 6 ~~~~~~r~~~-~yi~~~~~~~iViK~GGs~l~~~~~------~~~l~~~i~~l~~~g~~vVlVhGgg~~~ 68 (283)
T PRK00942 6 EKAEVLSEAL-PYIQRFMGKTIVIKYGGNAMTDEEL------KEAFARDIVLLKQVGINPVVVHGGGPQI 68 (283)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCCEEEEeCChHHH
Confidence 5667787765 6788898889999999888755421 3334455556667787777777776433
No 106
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=23.64 E-value=77 Score=30.85 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=14.4
Q ss_pred HhCCcEEEEecccccCC
Q 014167 161 KYHARVLYIDIDVHHGD 177 (429)
Q Consensus 161 ~~~~RVl~IDiDvHHGD 177 (429)
++++|||+||.|.+..+
T Consensus 27 ~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 27 TMGNKILLVGCDPKADS 43 (273)
T ss_pred hhCCCeEEEeccccccc
Confidence 55789999999998755
No 107
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=23.61 E-value=43 Score=31.01 Aligned_cols=47 Identities=32% Similarity=0.423 Sum_probs=36.0
Q ss_pred cCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHH
Q 014167 258 CGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCW 309 (429)
Q Consensus 258 ~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w 309 (429)
+|+|...-| |.|++...++++.++..+.++.+...||-|+.|++...
T Consensus 99 ~g~d~I~lD-----~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya 145 (169)
T PF01729_consen 99 AGADIIMLD-----NMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYA 145 (169)
T ss_dssp TT-SEEEEE-----S-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHH
T ss_pred hCCCEEEec-----CcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHH
Confidence 444444445 34888999999999888888999999999999987653
No 108
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.52 E-value=7.1e+02 Score=24.47 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh-cCCCEEE--EcCCCCCchhHH
Q 014167 230 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK-FNLPLLV--TGGGGYTKENVA 306 (429)
Q Consensus 230 ~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~-~~~pvl~--lggGGY~~~~va 306 (429)
+-+++..+.+ .+.+.-.++++++.||+-++.+-+.-..+| ..+..+++ ++.||++ --.+|+.....+
T Consensus 144 t~~e~~~Ave----~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl------~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~ 213 (260)
T TIGR01361 144 TIEEWLYAAE----YILSSGNGNVILCERGIRTFEKATRNTLDL------SAVPVLKKETHLPIIVDPSHAAGRRDLVIP 213 (260)
T ss_pred CHHHHHHHHH----HHHHcCCCcEEEEECCCCCCCCCCcCCcCH------HHHHHHHHhhCCCEEEcCCCCCCccchHHH
Confidence 4556666654 444566789999999997663222223444 24555665 5899888 445665443332
Q ss_pred HHHHHHHhhhhcCC
Q 014167 307 RCWTVETGILLDTE 320 (429)
Q Consensus 307 r~w~~~t~~llg~~ 320 (429)
-+. .++.+|..
T Consensus 214 ~~~---aAva~Ga~ 224 (260)
T TIGR01361 214 LAK---AAIAAGAD 224 (260)
T ss_pred HHH---HHHHcCCC
Confidence 222 35666654
No 109
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=23.35 E-value=73 Score=30.95 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=13.4
Q ss_pred hCCcEEEEecccccCC
Q 014167 162 YHARVLYIDIDVHHGD 177 (429)
Q Consensus 162 ~~~RVl~IDiDvHHGD 177 (429)
+++|||+||+|.++..
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999998643
No 110
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=23.34 E-value=1.7e+02 Score=28.61 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCccc-CHHHH----HHHHHHHHhcCCCEEEEcC
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNL-SIDGH----AECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~l-s~~g~----~~~~~~l~~~~~pvl~lgg 297 (429)
..+...+++++|+.||+ |++..+.. ....+ .++..++++++..++++-+
T Consensus 121 ~~l~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e 174 (259)
T TIGR03878 121 ATLAYAIKEYKVKNTVI---------DSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQ 174 (259)
T ss_pred HHHHHHHHhhCCCEEEE---------cCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34456678899999998 44433221 12222 2355677888888888754
No 111
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=23.33 E-value=26 Score=27.28 Aligned_cols=10 Identities=40% Similarity=0.992 Sum_probs=7.2
Q ss_pred CCccccchHH
Q 014167 144 SGFCYINDLV 153 (429)
Q Consensus 144 sGFC~~Ndia 153 (429)
-=|||+||--
T Consensus 16 TKFcYyNNy~ 25 (63)
T PF02701_consen 16 TKFCYYNNYN 25 (63)
T ss_pred CEEEeecCCC
Confidence 4589998853
No 112
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.29 E-value=2e+02 Score=27.83 Aligned_cols=98 Identities=20% Similarity=0.365 Sum_probs=63.3
Q ss_pred CCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcc-cCCCCCcceEEeccCC--CCCChHHHHHHHH
Q 014167 163 HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKE-IGEREGKFYAINVPLK--DGIDDTSFTRLFK 239 (429)
Q Consensus 163 ~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~-~G~g~G~~~~vNvPL~--~g~~D~~y~~~f~ 239 (429)
+++|||+-. .-.|+-|.++...+.+|-.+.+|.+-++|.|+.=.... +-.-.|. +.+=|-|. .|+..
T Consensus 45 ~~~vli~G~-YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~-~DlivDlTGlGG~~P-------- 114 (254)
T COG4017 45 FKEVLIFGV-YLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGE-VDLIVDLTGLGGIEP-------- 114 (254)
T ss_pred cceEEEEEe-eehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhhcCCCCCc-eeEEEeccccCCCCH--------
Confidence 488888865 33588899999889999999999886668886411111 1111222 23444443 23332
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCC-CcccCHHHHHHHH
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLG-CFNLSIDGHAECV 282 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg-~~~ls~~g~~~~~ 282 (429)
..+..|.|.+.|| .||-| .+..++.+|-.-.
T Consensus 115 ----e~L~~fnp~vfiV--------EdP~gn~~D~~I~eyn~T~ 146 (254)
T COG4017 115 ----EFLAKFNPKVFIV--------EDPKGNVFDVDIYEYNNTY 146 (254)
T ss_pred ----HHHhccCCceEEE--------ECCCCCCCccchhhcCCHH
Confidence 4567899999888 68888 5677777775433
No 113
>PRK12362 germination protease; Provisional
Probab=23.23 E-value=2.3e+02 Score=29.09 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=61.2
Q ss_pred CccccchHHHHHHHHHHhC--CcEEEEecccccCCcceeccccC--CCEEEEeecccCCCCCCCCCCCcccCCCCCcceE
Q 014167 145 GFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFT--DRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYA 220 (429)
Q Consensus 145 GFC~~Ndiaiai~~ll~~~--~RVl~IDiDvHHGDGtq~aF~~d--~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~ 220 (429)
.|.+--|.|+=++++.+.. +.+ .||..-=... =+|-++.+--- . ....+|...|.|-+
T Consensus 3 ~~~irTDLA~Ea~e~~~~~~~~ei----------~GV~~~e~~~~~ikiT~V~I~~e-------~-g~~~mgKp~G~YiT 64 (318)
T PRK12362 3 MFNIRTDLAVEARELYRGKTGREI----------PGVEVEEKKEEDIKVTTVKILNE-------Q-GEKAMGKPKGTYIT 64 (318)
T ss_pred CccccchhHHHHHHHhhhccCCcC----------CCEEEEEeecCCeEEEEEEEcCc-------H-HHHHhCCCCccEEE
Confidence 3566778888887776431 221 2432211222 24445444100 0 12347788899989
Q ss_pred EeccCCCCCChHHHHHHHHHHHHHHHHhc-----CCCEEEEecCCCCCCCCCCCCc
Q 014167 221 INVPLKDGIDDTSFTRLFKTIISKVVETY-----APGAIVLQCGADSLAGDRLGCF 271 (429)
Q Consensus 221 vNvPL~~g~~D~~y~~~f~~ii~~i~~~f-----~Pd~Ivvq~G~Ds~~gDplg~~ 271 (429)
+-.|--..- |.++...+...+...+..+ +..++|+..|-|-..+|-||-.
T Consensus 65 iE~p~l~~~-d~~~~~~i~~~la~~L~~ll~~~~~~~iLVvGLGN~~vTpDaLGP~ 119 (318)
T PRK12362 65 IEAPELREY-DRELHEEVSKILAKELKKLINLDKEMTVLVVGLGNWNVTPDALGPK 119 (318)
T ss_pred EecCCcccc-CHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEcCCCCcCccccchh
Confidence 988843322 4455544444444433333 3469999999999999988853
No 114
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=23.14 E-value=1.8e+02 Score=30.33 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHH----HHhcCCCEEEEcCCCCCch
Q 014167 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRF----VKKFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 241 ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~----l~~~~~pvl~lggGGY~~~ 303 (429)
.|..+++.-+||+||+. ||-+-. .++.....+.-. +.+.++|.++++|-==...
T Consensus 91 F~~rvL~sE~PDlVVfT-------GD~i~g--~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 91 FVSRVLASEKPDLVVFT-------GDNIFG--HSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred HHHHHHhccCCCEEEEe-------CCcccc--cccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 46677888999999983 665433 566666665433 3446999999998544443
No 115
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=23.13 E-value=73 Score=30.60 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=31.9
Q ss_pred EEecCCCCCCCCCCCCcccCHHHHHHHH-HHHHhcCCCEEEEcCCCCCchhHHHH
Q 014167 255 VLQCGADSLAGDRLGCFNLSIDGHAECV-RFVKKFNLPLLVTGGGGYTKENVARC 308 (429)
Q Consensus 255 vvq~G~Ds~~gDplg~~~ls~~g~~~~~-~~l~~~~~pvl~lggGGY~~~~var~ 308 (429)
|+..|+|..+-|-+ .|+ +++..-.+++++.-|+|-+.+|+++.
T Consensus 154 vLtSG~~psAldGv-----------~~i~~lie~hkg~i~VmpG~Gi~~sNl~~i 197 (255)
T KOG4013|consen 154 VLTSGQEPSALDGV-----------YIIRELIELHKGKIDVMPGCGINSSNLANI 197 (255)
T ss_pred HhhcCCCcccccch-----------HHHHHHHHHhcCCEEEecCCCcchHHHHHH
Confidence 46778888877732 234 34444578999999999999999885
No 116
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=22.96 E-value=1.2e+02 Score=24.30 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=14.2
Q ss_pred HHHhcCCCEEEEcCCCCCc
Q 014167 284 FVKKFNLPLLVTGGGGYTK 302 (429)
Q Consensus 284 ~l~~~~~pvl~lggGGY~~ 302 (429)
.++.++.+=+.++.|||.-
T Consensus 91 ~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 91 ILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp HHHHTTTSSEEEETTHHHH
T ss_pred HHHHcCCCCEEEecChHHH
Confidence 3666777677888999863
No 117
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=22.82 E-value=91 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEE
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVL 256 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivv 256 (429)
.-+...+.+-+.+.+++++||+||-
T Consensus 71 ~~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 71 SALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 3455666677788899999999986
No 118
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=22.72 E-value=87 Score=31.33 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.8
Q ss_pred HHHHhCCcEEEEecccccC
Q 014167 158 ELLKYHARVLYIDIDVHHG 176 (429)
Q Consensus 158 ~ll~~~~RVl~IDiDvHHG 176 (429)
.|.++.+|||+||.|..++
T Consensus 23 ~La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 23 MMAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred HHHHCCCeEEEEEecCCCC
Confidence 3445578999999999864
No 119
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=22.51 E-value=2.6e+02 Score=31.13 Aligned_cols=78 Identities=26% Similarity=0.506 Sum_probs=46.3
Q ss_pred CCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcC----CCEEEE-------------cCCCCCchhHHHHHHHHH
Q 014167 251 PGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFN----LPLLVT-------------GGGGYTKENVARCWTVET 313 (429)
Q Consensus 251 Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~----~pvl~l-------------ggGGY~~~~var~w~~~t 313 (429)
+.+=|+.||-|+-.| | +...|-.++ .||.++ -||||+...|++....+.
T Consensus 416 ~nLRILaCGGDGTVG-----W---------iLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve 481 (1004)
T KOG0782|consen 416 VNLRILACGGDGTVG-----W---------ILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVE 481 (1004)
T ss_pred cceEEEEecCCCcee-----e---------hhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHh
Confidence 679999999776554 2 333333332 233322 389999999988766544
Q ss_pred hh-h--hc-----CC-------------CCCCCCCchhhhhhCCCCCCCC
Q 014167 314 GI-L--LD-----TE-------------LPNEIPENEYIKYFAPECSLRI 342 (429)
Q Consensus 314 ~~-l--lg-----~~-------------~~~~lP~~~~~~~~~p~~~l~~ 342 (429)
.. + |+ .+ +-..||-+-|-.||.-.|.-|+
T Consensus 482 ~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~LPL~VfnNYFSlGfDAHV 531 (1004)
T KOG0782|consen 482 HGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSALPLTVFNNYFSLGFDAHV 531 (1004)
T ss_pred cCcEEeeeeeeecccCCCCCChhhhcccchhccchhHhhccccccccceE
Confidence 21 1 11 11 1135777778888876666555
No 120
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.31 E-value=2.4e+02 Score=23.37 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=11.0
Q ss_pred HHhcCCCEEEEecC
Q 014167 246 VETYAPGAIVLQCG 259 (429)
Q Consensus 246 ~~~f~Pd~Ivvq~G 259 (429)
+.+.+||+|.+++-
T Consensus 46 i~~~~pdiV~iS~~ 59 (125)
T cd02065 46 AKEEDADVVGLSAL 59 (125)
T ss_pred HHHcCCCEEEEecc
Confidence 34589999999874
No 121
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=22.23 E-value=5.3e+02 Score=25.32 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCC
Q 014167 245 VVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTE 320 (429)
Q Consensus 245 i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~ 320 (429)
.+-+.+||+|+...+.+ ....+.+++. +|++++-.+.-+....-+ +...++.++|++
T Consensus 96 ~I~al~PDLIi~~~~~~-----------------~~~~~~L~~~-~pv~~~~~~~~~~~~~~~-~i~~lg~i~g~e 152 (303)
T PRK11411 96 AIAALKPDLIIADSSRH-----------------AGVYIALQKI-APTLLLKSRNETYQENLQ-SAAIIGEVLGKK 152 (303)
T ss_pred HHHhCCCCEEEeccccc-----------------HHHHHHHHHh-CCEEEecCCCCCHHHHHH-HHHHHHHHhCCH
Confidence 34568999999743211 1234556666 699987543323332211 334566777753
No 122
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=22.23 E-value=1.3e+02 Score=30.39 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCEEEEecC---CCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEE
Q 014167 242 ISKVVETYAPGAIVLQCG---ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G---~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~l 295 (429)
+.+++.+.+||+||-.+. +|....+|--.|.+...|=..+.+..+..+.+++-+
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhi 98 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHI 98 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEe
Confidence 456677789999999887 477888887788888888888888888888887643
No 123
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=22.21 E-value=54 Score=34.06 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=21.5
Q ss_pred HHHHHHHhCCcEEEEecccccCCcceec
Q 014167 155 GILELLKYHARVLYIDIDVHHGDGVEEA 182 (429)
Q Consensus 155 ai~~ll~~~~RVl~IDiDvHHGDGtq~a 182 (429)
||+++.+..+||=|||+|+ |.|+|+.
T Consensus 101 aIleA~~g~~~vHIID~~i--~~G~QW~ 126 (374)
T PF03514_consen 101 AILEAFEGERRVHIIDFGI--GFGVQWP 126 (374)
T ss_pred HHHHHhccCcceEEEeccC--CcchHHH
Confidence 5678877789999999998 5688874
No 124
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.16 E-value=82 Score=31.81 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=39.2
Q ss_pred ecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHH
Q 014167 257 QCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARC 308 (429)
Q Consensus 257 q~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~ 308 (429)
++|+|..--| |+|++...++++.+++.+.++++---||=|+.|++.-
T Consensus 217 ~~gaDiI~LD-----nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~y 263 (289)
T PRK07896 217 AEGAELVLLD-----NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAY 263 (289)
T ss_pred HcCCCEEEeC-----CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHH
Confidence 4666666667 7889999999999888888889999999999988664
No 125
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=22.11 E-value=3.4e+02 Score=24.83 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCccc---CHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 242 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNL---SIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~l---s~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
+..+++..+||+||+. ||=.....- +..-+.++++.+.+.++|+.++.|
T Consensus 33 ~~~~~~~~~~d~vv~~-------GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~G 84 (199)
T cd07383 33 IERVLDAEKPDLVVLT-------GDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFG 84 (199)
T ss_pred HHHHHhhcCCCEEEEC-------CccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 4455667799987762 332221111 123334455555666899888765
No 126
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.91 E-value=1.8e+02 Score=25.87 Aligned_cols=37 Identities=5% Similarity=0.186 Sum_probs=22.4
Q ss_pred hcCCCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhc
Q 014167 248 TYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKF 288 (429)
Q Consensus 248 ~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~ 288 (429)
.++||+|+++.|..=..... .-+. +.+.++++.+++.
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~----~~~~~~~~~~l~~li~~i~~~ 105 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQN----WKYKDDFKKDYETMIDSFQAL 105 (188)
T ss_pred ccCCCEEEEEcccCCCCCCC----CccHHHHHHHHHHHHHHHHHH
Confidence 47999999999975332211 1122 3455666666654
No 127
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.63 E-value=1e+02 Score=29.19 Aligned_cols=62 Identities=24% Similarity=0.488 Sum_probs=42.2
Q ss_pred CCCCCCCCcccCCC-CCcceEEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCC
Q 014167 201 FFPGTGDVKEIGER-EGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLA 264 (429)
Q Consensus 201 ffPgtG~~~~~G~g-~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~-Ds~~ 264 (429)
+=|||-++.-.|.- .|..| +.|-|=.--+.++-+.+++.++ .+++.|.|+.+|+.+|. |+++
T Consensus 64 YKPGT~slAalGaav~GaDY-iKVGLYg~kn~~eA~e~m~~vv-rAVkd~d~~k~VVAaGYaDa~R 127 (235)
T COG1891 64 YKPGTASLAALGAAVAGADY-IKVGLYGTKNEEEALEVMKNVV-RAVKDFDPSKKVVAAGYADAHR 127 (235)
T ss_pred CCCchHHHHHHHhHhhCCce-EEEeecccccHHHHHHHHHHHH-HHHhccCCCceEEeccccchhh
Confidence 66888666555533 34334 5666654445667777887776 56789999999999995 4443
No 128
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=21.16 E-value=1.5e+02 Score=28.56 Aligned_cols=54 Identities=7% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCEEEEecCCCC----CCCCCCCCcccCHHHHHHHHHHHHhcCCC-EEEE
Q 014167 242 ISKVVETYAPGAIVLQCGADS----LAGDRLGCFNLSIDGHAECVRFVKKFNLP-LLVT 295 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G~Ds----~~gDplg~~~ls~~g~~~~~~~l~~~~~p-vl~l 295 (429)
+..+++.++||+||-.+|.-. ...+|...+.....+-..+.+.+++.+.+ ++.+
T Consensus 41 l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~ 99 (306)
T PLN02725 41 VEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFL 99 (306)
T ss_pred HHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEe
Confidence 344456689999999998632 23455444555555666777788777765 4443
No 129
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.15 E-value=3.2e+02 Score=24.24 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=30.1
Q ss_pred HHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCC-CEEEEcCCCCC
Q 014167 245 VVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL-PLLVTGGGGYT 301 (429)
Q Consensus 245 i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~-pvl~lggGGY~ 301 (429)
.+.+.+||+|.+|+ -+.-+.....++++.+++.+. .+.++.||+-.
T Consensus 45 aa~~~~adiVglS~-----------L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~ 91 (128)
T cd02072 45 AAIETDADAILVSS-----------LYGHGEIDCKGLREKCDEAGLKDILLYVGGNLV 91 (128)
T ss_pred HHHHcCCCEEEEec-----------cccCCHHHHHHHHHHHHHCCCCCCeEEEECCCC
Confidence 34567999999964 122345566778888888765 45555666653
No 130
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=21.05 E-value=6.6e+02 Score=26.68 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCC--CcccCCCCCcceEEeccCCCCCCh
Q 014167 154 LGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGD--VKEIGEREGKFYAINVPLKDGIDD 231 (429)
Q Consensus 154 iai~~ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~--~~~~G~g~G~~~~vNvPL~~g~~D 231 (429)
.-+..++.++.||.|||.|+ |-.+++-. - +||+ .||.+-. +++...-+ +|-|-.- .+.-.-
T Consensus 92 ~LaN~~l~rG~~v~iiDaDv----GQ~ei~pP--g--~ISL------~~~~s~~~~L~~l~~~~--~~FvG~i-sP~~~~ 154 (398)
T COG1341 92 YLANKLLARGRKVAIIDADV----GQSEIGPP--G--FISL------AFPESPVISLSELEPFT--LYFVGSI-SPQGFP 154 (398)
T ss_pred HHHHHHhhcCceEEEEeCCC----CCcccCCC--c--eEEe------ecccCCCCCHHHcCccc--eEEEecc-CCCCCh
Confidence 33456667778899999999 44454432 1 3444 2332211 22222111 1111111 122235
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEec
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQC 258 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~ 258 (429)
..|+.....++..+.++ +++|++-+
T Consensus 155 ~~~i~~v~rL~~~a~~~--~~~ilIdT 179 (398)
T COG1341 155 GRYIAGVARLVDLAKKE--ADFILIDT 179 (398)
T ss_pred HHHHHHHHHHHHHhhcc--CCEEEEcC
Confidence 67777777776655444 88888743
No 131
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=20.98 E-value=3.7e+02 Score=24.42 Aligned_cols=16 Identities=6% Similarity=0.378 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCCEEEE
Q 014167 241 IISKVVETYAPGAIVL 256 (429)
Q Consensus 241 ii~~i~~~f~Pd~Ivv 256 (429)
.+..++++++||+||+
T Consensus 36 ~~~~~i~~~~pd~vi~ 51 (171)
T cd07384 36 AFKTALQRLKPDVVLF 51 (171)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 3445566899999886
No 132
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.75 E-value=1.9e+02 Score=23.90 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHHHHHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHH
Q 014167 155 GILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSF 234 (429)
Q Consensus 155 ai~~ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y 234 (429)
.+..|++..-.|-++|.+++..+-++.+-...++++-+|.+.. ..+
T Consensus 20 la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~----------------------------------~~~ 65 (121)
T PF02310_consen 20 LAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMT----------------------------------PNL 65 (121)
T ss_dssp HHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSS----------------------------------THH
T ss_pred HHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCc----------------------------------CcH
Confidence 3345555567899999999886677777777899999997411 111
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHH-HHh-cCCCEEEEcCCCCCch
Q 014167 235 TRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRF-VKK-FNLPLLVTGGGGYTKE 303 (429)
Q Consensus 235 ~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~-l~~-~~~pvl~lggGGY~~~ 303 (429)
.. ...++. .+++..|+++++.-|.- .|. .-+. ++. .+.-.++.|+|-++..
T Consensus 66 ~~-~~~l~~-~~k~~~p~~~iv~GG~~-----------~t~-----~~~~~l~~~~~~D~vv~GegE~~~~ 118 (121)
T PF02310_consen 66 PE-AKRLAR-AIKERNPNIPIVVGGPH-----------ATA-----DPEEILREYPGIDYVVRGEGEEAFP 118 (121)
T ss_dssp HH-HHHHHH-HHHTTCTTSEEEEEESS-----------SGH-----HHHHHHHHHHTSEEEEEETTSSHHH
T ss_pred HH-HHHHHH-HHHhcCCCCEEEEECCc-----------hhc-----ChHHHhccCcCcceecCCChHHhhc
Confidence 11 233333 37889999888876622 221 2222 222 4668899999977654
No 133
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=20.66 E-value=1.6e+02 Score=29.17 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCC
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 298 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggG 298 (429)
.++...+++|+||+||+-+===++-| | ...-++++..++|.++++-|
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a~PG-P-----------~~ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPAAPG-P-----------KKAREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC-c-----------hHHHHHHHhcCCCEEEEcCC
Confidence 45566778999999888543222222 2 24556778889999998755
No 134
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=20.58 E-value=2.2e+02 Score=30.31 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCEEEE-ecCCCCCCCCCCCCcccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCchhHHHHHH
Q 014167 237 LFKTIISKVVETYAPGAIVL-QCGADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWT 310 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivv-q~G~Ds~~gDplg~~~ls~~g~~~~~~~l~-~~~~pvl~lggGGY~~~~var~w~ 310 (429)
-+.+.|..+.++|+|++|+| ++....+.||.+ ..+++.++ ..+.|++.+--.||.-. ....|.
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi----------~~v~~e~~~~~~~~vi~v~t~gf~g~-~~~G~~ 172 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDL----------EAVCKAAAEKTGIPVIPVDSEGFYGS-KNLGNK 172 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCH----------HHHHHHHHHHhCCCEEEEECCCCccc-hhHHHH
Confidence 34455667778899997654 445566666643 22444443 35889999999998653 334443
No 135
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=20.49 E-value=89 Score=31.33 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=38.0
Q ss_pred ecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHH
Q 014167 257 QCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARC 308 (429)
Q Consensus 257 q~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~ 308 (429)
++|+|..--| |+|++...++++.+++.+..+++.--||=|+.|++.-
T Consensus 206 ~~GaDiI~lD-----n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~y 252 (277)
T TIGR01334 206 QASPDILQLD-----KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADY 252 (277)
T ss_pred HcCcCEEEEC-----CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHH
Confidence 3455555555 8999999999999988778888999999999988654
No 136
>PRK10037 cell division protein; Provisional
Probab=20.40 E-value=89 Score=30.01 Aligned_cols=19 Identities=26% Similarity=0.109 Sum_probs=14.4
Q ss_pred HHHHhCCcEEEEecccccCC
Q 014167 158 ELLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 158 ~ll~~~~RVl~IDiDvHHGD 177 (429)
.|.++.+|||+||.|-+ |+
T Consensus 25 ~La~~G~rVLlID~D~q-~~ 43 (250)
T PRK10037 25 SLQMLGENVLVIDACPD-NL 43 (250)
T ss_pred HHHhcCCcEEEEeCChh-hh
Confidence 34456789999999985 44
No 137
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=20.33 E-value=1.4e+02 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 014167 228 GIDDTSFTRLFKTIISKVVETYAPGAIVLQ 257 (429)
Q Consensus 228 g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq 257 (429)
..++++++..=+++|...++.||||++||-
T Consensus 84 ~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd 113 (400)
T COG4671 84 DGDLEETKKLRSQLILSTAETFKPDIFIVD 113 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345889999999999999999999999984
No 138
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.18 E-value=2.5e+02 Score=27.09 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=35.2
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC------CCCCchhHHHHHHHHHhhhhcC
Q 014167 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG------GGYTKENVARCWTVETGILLDT 319 (429)
Q Consensus 246 ~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg------GGY~~~~var~w~~~t~~llg~ 319 (429)
+-+.+||+||...+...-..++ +..+.+++.++|++++-. |--+..++.+ +....+.++|+
T Consensus 75 I~~l~PDlIi~~~~~~~~~~~~------------~~~~~L~~~gipv~~~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~ 141 (284)
T cd01148 75 VLAARPDLVFGGWSYGFDKGGL------------GTPDSLAELGIKTYILPESCGQRRGEATLDDVYN-DIRNLGKIFDV 141 (284)
T ss_pred HhcCCCCEEEEecccccCCCCC------------CCHHHHHHCCCeEEECchhccCCCCCCCHHHHHH-HHHHHHHHhCC
Confidence 4568999999865432211111 245677888999998853 2223333333 34445566665
Q ss_pred C
Q 014167 320 E 320 (429)
Q Consensus 320 ~ 320 (429)
+
T Consensus 142 e 142 (284)
T cd01148 142 E 142 (284)
T ss_pred H
Confidence 3
No 139
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.06 E-value=1.9e+02 Score=23.27 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCc
Q 014167 280 ECVRFVKKFNLPLLVTGGGGYTK 302 (429)
Q Consensus 280 ~~~~~l~~~~~pvl~lggGGY~~ 302 (429)
...+.|++.+.. +..+.||++-
T Consensus 76 ~aa~~L~~~G~~-~~~l~GG~~~ 97 (100)
T cd01523 76 FVAELLAERGYD-VDYLAGGMKA 97 (100)
T ss_pred HHHHHHHHcCce-eEEeCCcHHh
Confidence 356677777777 7888999853
Done!