Query 014167
Match_columns 429
No_of_seqs 301 out of 1660
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 8E-117 3E-121 897.8 41.4 374 4-377 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 2E-114 7E-119 876.4 40.6 366 4-370 2-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 4E-112 1E-116 863.6 35.3 371 1-374 10-380 (388)
4 1c3p_A Protein (HDLP (histone 100.0 1.3E-94 4.4E-99 736.2 25.5 362 5-370 2-371 (375)
5 1zz1_A Histone deacetylase-lik 100.0 3.3E-88 1.1E-92 687.8 33.6 315 6-332 2-343 (369)
6 2vqm_A HD4, histone deacetylas 100.0 5.7E-88 2E-92 695.3 26.7 365 3-383 6-400 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 2E-85 6.7E-90 658.9 26.6 305 9-318 3-341 (341)
8 3men_A Acetylpolyamine aminohy 100.0 7.8E-85 2.7E-89 658.2 29.7 306 7-318 22-359 (362)
9 2pqp_A HD7A, histone deacetyla 100.0 9E-84 3.1E-88 659.7 31.5 351 5-378 36-418 (421)
10 4hf7_A Putative acylhydrolase; 77.6 2.3 7.7E-05 38.0 4.7 70 221-295 54-124 (209)
11 4h08_A Putative hydrolase; GDS 63.9 20 0.00067 31.1 7.6 59 219-289 47-109 (200)
12 3ced_A Methionine import ATP-b 62.2 5.4 0.00018 32.2 3.2 57 239-295 34-95 (98)
13 1ivn_A Thioesterase I; hydrola 58.9 19 0.00065 30.8 6.4 65 220-295 37-105 (190)
14 3d2m_A Putative acetylglutamat 52.6 15 0.00052 37.1 5.4 70 223-300 15-85 (456)
15 3p94_A GDSL-like lipase; serin 51.1 12 0.00042 32.1 3.9 68 221-296 50-121 (204)
16 3hp4_A GDSL-esterase; psychrot 48.5 18 0.00061 30.6 4.5 65 220-296 41-110 (185)
17 3skv_A SSFX3; jelly roll, GDSL 48.1 94 0.0032 30.9 10.3 52 243-296 237-290 (385)
18 1uf3_A Hypothetical protein TT 47.8 42 0.0014 29.2 7.0 51 238-297 21-71 (228)
19 3bzw_A Putative lipase; protei 47.4 27 0.00091 32.2 5.8 49 220-271 61-110 (274)
20 3av0_A DNA double-strand break 45.7 48 0.0017 32.5 7.7 58 232-297 43-103 (386)
21 1es9_A PAF-AH, platelet-activa 45.5 16 0.00055 32.6 3.8 43 246-296 89-137 (232)
22 1yzf_A Lipase/acylhydrolase; s 44.7 31 0.0011 29.0 5.4 65 221-296 43-111 (195)
23 3mil_A Isoamyl acetate-hydroly 44.6 53 0.0018 28.7 7.1 70 220-296 46-120 (240)
24 2q8u_A Exonuclease, putative; 43.5 45 0.0015 31.8 6.9 59 232-297 44-104 (336)
25 2qsw_A Methionine import ATP-b 43.3 3.5 0.00012 33.2 -0.9 56 240-295 38-97 (100)
26 2buf_A Acetylglutamate kinase; 43.2 54 0.0018 31.3 7.4 64 232-302 8-71 (300)
27 2vpt_A Lipolytic enzyme; ester 41.8 22 0.00074 31.3 4.1 59 229-295 66-126 (215)
28 2q0q_A ARYL esterase; SGNH hyd 41.7 27 0.00092 30.3 4.6 49 244-296 76-138 (216)
29 2ap9_A NAG kinase, acetylgluta 39.9 30 0.001 33.0 5.0 67 229-302 4-70 (299)
30 1ii7_A MRE11 nuclease; RAD50, 39.5 80 0.0027 30.1 8.0 58 232-297 23-83 (333)
31 3rjt_A Lipolytic protein G-D-S 39.3 8.5 0.00029 33.3 0.9 52 245-296 78-137 (216)
32 3dci_A Arylesterase; SGNH_hydr 38.5 48 0.0017 29.4 5.9 41 244-288 94-139 (232)
33 3dhx_A Methionine import ATP-b 36.1 19 0.00066 29.2 2.5 55 240-294 36-94 (106)
34 3aek_B Light-independent proto 35.2 57 0.002 33.9 6.6 56 237-303 72-128 (525)
35 2o14_A Hypothetical protein YX 35.1 37 0.0013 33.4 4.9 69 220-295 202-275 (375)
36 2qrr_A Methionine import ATP-b 34.4 18 0.00061 29.0 2.0 56 240-295 38-97 (101)
37 3dff_A Teicoplanin pseudoaglyc 33.8 42 0.0014 31.7 4.9 34 233-266 131-164 (273)
38 3dfi_A Pseudoaglycone deacetyl 32.1 49 0.0017 31.2 5.0 34 233-266 128-161 (270)
39 1g3q_A MIND ATPase, cell divis 30.8 38 0.0013 30.0 3.9 19 159-177 27-45 (237)
40 2rd5_A Acetylglutamate kinase- 29.3 31 0.0011 33.0 3.1 64 231-301 17-80 (298)
41 3q9l_A Septum site-determining 29.0 43 0.0015 30.1 3.9 20 158-177 26-45 (260)
42 1fxw_F Alpha2, platelet-activa 27.7 42 0.0014 29.8 3.6 42 246-295 90-137 (229)
43 2bty_A Acetylglutamate kinase; 27.4 53 0.0018 30.9 4.4 63 233-302 4-66 (282)
44 3tho_B Exonuclease, putative; 27.1 1.2E+02 0.0042 29.6 7.1 58 231-297 25-86 (379)
45 1hyq_A MIND, cell division inh 26.7 50 0.0017 29.9 3.9 19 159-177 27-45 (263)
46 2djk_A PDI, protein disulfide- 26.6 2.3E+02 0.0079 22.7 7.8 50 236-298 38-87 (133)
47 2xdq_B Light-independent proto 25.8 70 0.0024 33.0 5.2 54 240-303 78-133 (511)
48 3t1i_A Double-strand break rep 25.8 1.6E+02 0.0055 29.8 7.8 48 232-287 54-101 (431)
49 4fva_A 5'-tyrosyl-DNA phosphod 25.5 63 0.0022 28.2 4.3 31 228-259 23-53 (256)
50 3ea0_A ATPase, para family; al 24.6 42 0.0014 29.9 2.9 21 159-179 29-50 (245)
51 1k7c_A Rhamnogalacturonan acet 23.3 1.7E+02 0.0059 26.0 6.9 40 220-262 35-75 (233)
52 3dc7_A Putative uncharacterize 23.1 45 0.0016 29.4 2.8 47 249-295 81-135 (232)
53 1y80_A Predicted cobalamin bin 23.1 1.3E+02 0.0044 26.7 5.9 132 131-301 41-182 (210)
54 2nxf_A Putative dimetal phosph 23.1 1.6E+02 0.0054 26.8 6.7 56 234-297 36-95 (322)
55 3kjh_A CO dehydrogenase/acetyl 22.8 56 0.0019 28.9 3.4 24 236-260 118-141 (254)
56 1szn_A Alpha-galactosidase; (b 22.2 1.5E+02 0.005 29.8 6.7 70 228-297 25-98 (417)
57 2jjx_A Uridylate kinase, UMP k 22.2 1.1E+02 0.0038 28.3 5.4 50 250-301 11-63 (255)
58 3d03_A Phosphohydrolase; glyce 22.0 1.8E+02 0.0062 25.8 6.8 55 234-297 24-79 (274)
59 4f1h_A Tyrosyl-DNA phosphodies 21.8 84 0.0029 26.7 4.3 18 241-258 25-42 (250)
60 4hwg_A UDP-N-acetylglucosamine 21.0 1.9E+02 0.0065 28.3 7.2 36 219-257 66-101 (385)
61 2q8p_A Iron-regulated surface 21.0 1.8E+02 0.0061 26.1 6.6 54 246-319 56-109 (260)
62 4gz1_A Tyrosyl-DNA phosphodies 20.6 90 0.0031 27.1 4.3 17 242-258 32-48 (256)
63 2q02_A Putative cytoplasmic pr 20.5 3E+02 0.01 24.4 8.0 58 231-294 80-138 (272)
64 3jug_A Beta-mannanase; TIM-bar 20.4 3.2E+02 0.011 26.5 8.6 63 233-302 117-186 (345)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=8e-117 Score=897.83 Aligned_cols=374 Identities=60% Similarity=1.151 Sum_probs=358.9
Q ss_pred CCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhh
Q 014167 4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF 83 (429)
Q Consensus 4 ~~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~ 83 (429)
|+||+|+|||+|++|.+|++|||+|.|+++++++|+++||++.+++++|++||.++|++|||++||++|++.++.+..+.
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999988665554
Q ss_pred HhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC
Q 014167 84 RQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH 163 (429)
Q Consensus 84 ~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~ 163 (429)
.....+|+++.|||+|+++|++|+++|||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++++
T Consensus 82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 55566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHHH
Q 014167 164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 243 (429)
Q Consensus 164 ~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~ 243 (429)
+||||||||||||||||++||+||+|||+|||+++..||||||..+++|.++|+||+|||||++|++|++|+.+|+++|.
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~ 241 (376)
T 4a69_A 162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN 241 (376)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCCCC
Q 014167 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPN 323 (429)
Q Consensus 244 ~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~~~~ 323 (429)
|++++|+||+||+|||+|+|.+||||+|+||++||++|+++++++++|+++++||||++++++|||+++|++++|.++|+
T Consensus 242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhCCCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCccc
Q 014167 324 EIPENEYIKYFAPECSLRIP-NGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ 377 (429)
Q Consensus 324 ~lP~~~~~~~~~p~~~l~~~-~~~~~n~n~~~~l~~i~~~~~~~l~~~~~~p~v~ 377 (429)
+||+++|++||+|+|+|+++ +++|+|+|+++||++|+++|+||||++++|||||
T Consensus 322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999999 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.1e-114 Score=876.35 Aligned_cols=366 Identities=62% Similarity=1.186 Sum_probs=355.9
Q ss_pred CCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhh
Q 014167 4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF 83 (429)
Q Consensus 4 ~~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~ 83 (429)
|+||+|+|||++++|+||++|||+|.|+++++++|.++||++.+++++|++||.++|++|||++||++|++.++.+....
T Consensus 2 ~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEY 81 (367)
T ss_dssp CCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGGC
T ss_pred CCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccchh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999887665444
Q ss_pred HhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC
Q 014167 84 RQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH 163 (429)
Q Consensus 84 ~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~ 163 (429)
.....+|++++|||+|+++|++|+++|||+|.||+++++++.++||||+||+|||++++|+||||||||||||++|++++
T Consensus 82 ~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~~ 161 (367)
T 3max_A 82 SKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH 161 (367)
T ss_dssp HHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTTC
T ss_pred hhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHcC
Confidence 45567799999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHHH
Q 014167 164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 243 (429)
Q Consensus 164 ~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~ 243 (429)
+||||||||||||||||++||+||+|||+|||+++. ||||||..+++|.|+|+||+|||||++|++|++|+.+|+++|.
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~-~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~ 240 (367)
T 3max_A 162 QRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIIS 240 (367)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSS-CTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCC-CCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 9999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCCCC
Q 014167 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPN 323 (429)
Q Consensus 244 ~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~~~~ 323 (429)
|++++|+||+||+|||+|++.+||||+|+||++||.+|+++++++++|+++++||||++++|+|||+++|++++|.++|+
T Consensus 241 ~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~~ 320 (367)
T 3max_A 241 KVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320 (367)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcC
Q 014167 324 EIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 370 (429)
Q Consensus 324 ~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~ 370 (429)
++|+++||+||+|+|+|++++++|+|+|+++||++|+++|+||||+|
T Consensus 321 ~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 321 ELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999975
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=4.3e-112 Score=863.56 Aligned_cols=371 Identities=40% Similarity=0.767 Sum_probs=348.5
Q ss_pred CCCCCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCch
Q 014167 1 MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (429)
Q Consensus 1 ~~~~~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~ 80 (429)
+.+|+||+|+|||++++| +++|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++...
T Consensus 10 ~~~~~~~~~~y~~~~~~~--~~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~ 87 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGD 87 (388)
T ss_dssp ----CCCEEECCHHHHHH--HTTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC-
T ss_pred cCCCCcEEEEEChHHhcc--CCCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccccc
Confidence 357899999999999986 467999999999999999999999999999999999999999999999999998765332
Q ss_pred hhhHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHH
Q 014167 81 HLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELL 160 (429)
Q Consensus 81 ~~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll 160 (429)
. ......+|+++.|||+|+++|++|+++|||+|.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 88 ~-~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~ 166 (388)
T 3ew8_A 88 D-DHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLR 166 (388)
T ss_dssp --------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHT
T ss_pred c-cchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHH
Confidence 1 122345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHH
Q 014167 161 KYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240 (429)
Q Consensus 161 ~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ 240 (429)
+..+||||||||||||||||++||+||+|||+|||+++.+||||||..+++|.|+|+||+|||||++|++|++|+.+|++
T Consensus 167 ~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~~ 246 (388)
T 3ew8_A 167 RKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICES 246 (388)
T ss_dssp TTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred hcCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999998789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCC
Q 014167 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTE 320 (429)
Q Consensus 241 ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~ 320 (429)
+|.|++++|+||+||+|||||++.+||||+|+||++||.+|+++|+++++|+++++||||++++|+|||+++|++|+|++
T Consensus 247 ~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~ 326 (388)
T 3ew8_A 247 VLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKT 326 (388)
T ss_dssp HHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCChhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCC
Q 014167 321 LPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAP 374 (429)
Q Consensus 321 ~~~~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~~~~p 374 (429)
+|++||+++||++|+|+|+|++++++|+|+|+++||++|+++|++|||++++-.
T Consensus 327 l~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 327 LSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999999988653
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=1.3e-94 Score=736.24 Aligned_cols=362 Identities=31% Similarity=0.456 Sum_probs=320.8
Q ss_pred CeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhhH
Q 014167 5 DKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFR 84 (429)
Q Consensus 5 ~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~~ 84 (429)
++++|+|||+|..|.+++.|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++.... ..
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~-~~ 80 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCV-PK 80 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSC-CT
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCC-Ch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred hhhhcccc-CCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC
Q 014167 85 QELTKYNL-GEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH 163 (429)
Q Consensus 85 ~~~~~~~l-~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~ 163 (429)
....+|++ +.|||+|+++|++|++++||+|.||+.+++|+ +||||+||+|||++++|+||||||||||||++|++++
T Consensus 81 ~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g 158 (375)
T 1c3p_A 81 GAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKG 158 (375)
T ss_dssp THHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTT
T ss_pred HHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHHhC
Confidence 22356777 57999999999999999999999999999998 8999999999999999999999999999999999887
Q ss_pred -CcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccC-CCCCcceEEeccCCCCCChHHHHHHHHHH
Q 014167 164 -ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIG-EREGKFYAINVPLKDGIDDTSFTRLFKTI 241 (429)
Q Consensus 164 -~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G-~g~G~~~~vNvPL~~g~~D~~y~~~f~~i 241 (429)
+||||||||||||||||++||+||+|||+|+|+++..||||||..+++| .|+|++|++||||++|++|++|+.+|+++
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~ 238 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKS 238 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 6999999999999999999999999999999999988999999999999 99999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCC
Q 014167 242 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL 321 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~~ 321 (429)
|.|++++|+||+||+|||||+|.+||||.|+||.+||.+++++++++..|+++++||||++.+++|||++++++|+|.++
T Consensus 239 l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 318 (375)
T 1c3p_A 239 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREV 318 (375)
T ss_dssp HHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCChHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhC-CCCCC---CCC-CCCCCCCCcHHHHHHHHHHHHHHhhcC
Q 014167 322 PNEIPENEYIKYFA-PECSL---RIP-NGHIENLNSKSYLSTIKMQVLENLRSI 370 (429)
Q Consensus 322 ~~~lP~~~~~~~~~-p~~~l---~~~-~~~~~n~n~~~~l~~i~~~~~~~l~~~ 370 (429)
|+.||+. |.+++. .+++. ..+ +.++..+++......+++.|.+.++.+
T Consensus 319 ~~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 371 (375)
T 1c3p_A 319 PEKLNNK-AKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKA 371 (375)
T ss_dssp CSSCCHH-HHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHH
T ss_pred CccCCHH-HHHHHHhcCcccccCCCChHHhhhhhccCCCCCchHHHHHHHHHHH
Confidence 9999963 444443 22321 122 234445544444444455555555444
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=3.3e-88 Score=687.79 Aligned_cols=315 Identities=24% Similarity=0.361 Sum_probs=296.3
Q ss_pred eEEEEEcccccCCCCCCC----------------CCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHH
Q 014167 6 KISYFYDGDVGSVYFGPN----------------HPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYV 69 (429)
Q Consensus 6 ~v~~~y~~~~~~~~~g~~----------------HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi 69 (429)
+++|+|||+|..|.+++. |||+|.|+++++++|+++|+.+.+++++|++||.++|++||+++||
T Consensus 2 ~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Yv 81 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHL 81 (369)
T ss_dssp CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHHH
T ss_pred eEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHHH
Confidence 689999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhhhHhhhhccccCC-CCCCChhHHHHHHHHHHHHHHHHHHHHccCcc--eeeecCCCCCCccccCCCCc
Q 014167 70 EFLHRITPDTQHLFRQELTKYNLGE-DCPVFENLFEFCQIYAGGTIDAARRLNNQLCD--IAINWAGGLHHAKKCEASGF 146 (429)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~l~~-D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~--~Ain~~GG~HHA~~~~asGF 146 (429)
++|++.++. ...+.++. |||+++++|+++++++||+|.||+.+++|+++ +|++|||| |||++++++||
T Consensus 82 ~~l~~~~~~--------~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~GF 152 (369)
T 1zz1_A 82 ENMKRVSNL--------PTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGF 152 (369)
T ss_dssp HHHHHHHHS--------TTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBTT
T ss_pred HHHHHhCcc--------ccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCCc
Confidence 999987531 01345787 99999999999999999999999999999876 46889999 99999999999
Q ss_pred cccchHHHHHHHHHHhC--CcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCC-CCCCCcccCCCCCcceEEec
Q 014167 147 CYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFP-GTGDVKEIGEREGKFYAINV 223 (429)
Q Consensus 147 C~~Ndiaiai~~ll~~~--~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffP-gtG~~~~~G~g~G~~~~vNv 223 (429)
||||||||||++|++++ +||||||||||||||||++||+||+|||+|+|+++ ||| |||..+++|.|+|+||++||
T Consensus 153 C~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~--~yP~~tG~~~e~G~g~g~g~~vNv 230 (369)
T 1zz1_A 153 CIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL--CFPPDSGYSTERGAGNGHGYNINV 230 (369)
T ss_dssp BSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT--SSSTTCCCTTCCCCGGGTTCEEEE
T ss_pred hHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC--CCCCCCCcccccCCCCCCceEEee
Confidence 99999999999999874 89999999999999999999999999999999996 999 99999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc-----CCCEEEEcCC
Q 014167 224 PLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGG 298 (429)
Q Consensus 224 PL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~-----~~pvl~lggG 298 (429)
|||+|++|++|+.+|++++.|++++|+||+||+|||||+|.+||||.++||.+||.+++++|+++ ++|+++++||
T Consensus 231 PL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleG 310 (369)
T 1zz1_A 231 PLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEG 310 (369)
T ss_dssp EECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECC
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999998764 7999999999
Q ss_pred CCCchhHHHHHHHHHhhhhcCCCCCCCCCchhhh
Q 014167 299 GYTKENVARCWTVETGILLDTELPNEIPENEYIK 332 (429)
Q Consensus 299 GY~~~~var~w~~~t~~llg~~~~~~lP~~~~~~ 332 (429)
||+++++++||+++++.|+|.++ ...|..++++
T Consensus 311 GY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~ 343 (369)
T 1zz1_A 311 GYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLA 343 (369)
T ss_dssp CCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHh
Confidence 99999999999999999999887 6666666665
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=5.7e-88 Score=695.29 Aligned_cols=365 Identities=22% Similarity=0.336 Sum_probs=314.6
Q ss_pred CCCeEEEEEcccccCCCCC----CCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCC
Q 014167 3 SKDKISYFYDGDVGSVYFG----PNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPD 78 (429)
Q Consensus 3 ~~~~v~~~y~~~~~~~~~g----~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~ 78 (429)
++.+|+++||++|..|..+ ..|||+|.|+++++++|+++||.+++++++|++||.++|++|||++||++++.....
T Consensus 6 p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~ 85 (413)
T 2vqm_A 6 PRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85 (413)
T ss_dssp CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGG
T ss_pred CCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchh
Confidence 5679999999999999865 449999999999999999999999999999999999999999999999887643211
Q ss_pred chhh--------hHhh-----hhccccCCCCCCCh-hHHHHHHHHHHHHHHHHHHHHccCccee--eecCCCCCCccccC
Q 014167 79 TQHL--------FRQE-----LTKYNLGEDCPVFE-NLFEFCQIYAGGTIDAARRLNNQLCDIA--INWAGGLHHAKKCE 142 (429)
Q Consensus 79 ~~~~--------~~~~-----~~~~~l~~D~p~f~-~l~~~~~~~aGgsl~aa~~l~~g~~~~A--in~~GG~HHA~~~~ 142 (429)
.... .... ...+.++.|+++.. ++++++++++|++++|++++++|+++.| ++++|| |||++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~ 164 (413)
T 2vqm_A 86 RQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEEST 164 (413)
T ss_dssp GCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTB
T ss_pred hhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCC
Confidence 1100 0000 01123444555443 6788999999999999999999998765 456777 9999999
Q ss_pred CCCccccchHHHHHHHHHHhC--CcEEEEecccccCCcceeccccCCCEEEEeecccCC-CCCCCCCCCcccCCCCCcce
Q 014167 143 ASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGD-LFFPGTGDVKEIGEREGKFY 219 (429)
Q Consensus 143 asGFC~~Ndiaiai~~ll~~~--~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~-~ffPgtG~~~~~G~g~G~~~ 219 (429)
|+||||||||||||++|++.+ +||||||||||||||||++||+||+|||+|+|+|++ .||||||..+++|.++|++|
T Consensus 165 a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~ 244 (413)
T 2vqm_A 165 PMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244 (413)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTC
T ss_pred CCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCccccc
Confidence 999999999999999998765 899999999999999999999999999999999943 49999999999999999999
Q ss_pred EEeccCCC----CCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCC--CCCCCcccCHHHHHHHHHHHHhc-CCCE
Q 014167 220 AINVPLKD----GIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAG--DRLGCFNLSIDGHAECVRFVKKF-NLPL 292 (429)
Q Consensus 220 ~vNvPL~~----g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~g--Dplg~~~ls~~g~~~~~~~l~~~-~~pv 292 (429)
++||||+. +++|++|+.+|+.+|.|++++|+||+||+|||||++.+ ||||+|+||.++|++++++|+++ ++|+
T Consensus 245 ~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~ 324 (413)
T 2vqm_A 245 NVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRI 324 (413)
T ss_dssp EEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCE
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999874 57899999999999999999999999999999999999 66999999999999999999998 8999
Q ss_pred EEEcCCCCCchhHHHHHHHHHhhhhcCCCCCCCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC
Q 014167 293 LVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQH 372 (429)
Q Consensus 293 l~lggGGY~~~~var~w~~~t~~llg~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~~~ 372 (429)
+++|||||+++++++||++++++|+|.+++ ++|+.. ....+|.|+.++|+++++...+.|+.|+.
T Consensus 325 v~vleGGY~~~~l~~~~~~~~~~l~g~~~~-~~p~~~--------------~~~~p~~~~~~~~~~v~~~~~~~W~~l~~ 389 (413)
T 2vqm_A 325 VLALEGGHDLTAICDASEACVSALLGNELD-PLPEKV--------------LQQRPNANAVRSMEKVMEIHSKYWRCLQR 389 (413)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTTCCCC-CCCHHH--------------HHCCCCHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred EEEeCcCCChHHHHHHHHHHHHHHcCCCCC-CCChhh--------------hhcCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999998875 455421 11346889999999999999999999999
Q ss_pred CCccccccCCC
Q 014167 373 APSVQMQEVPP 383 (429)
Q Consensus 373 ~p~v~~~~~~~ 383 (429)
+|+++++.++.
T Consensus 390 ~~~~~~~~~~~ 400 (413)
T 2vqm_A 390 TTSTAGRSLIE 400 (413)
T ss_dssp CCCCTTSCHHH
T ss_pred chhhcCcCcch
Confidence 99999987644
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2e-85 Score=658.92 Aligned_cols=305 Identities=20% Similarity=0.290 Sum_probs=281.3
Q ss_pred EEEcccccCCCCCC--------CCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCch
Q 014167 9 YFYDGDVGSVYFGP--------NHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (429)
Q Consensus 9 ~~y~~~~~~~~~g~--------~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~ 80 (429)
++|||++..|..+. .|||+|.|+++++++|+++||. ++++|++||.++|++|||++||++|++.++...
T Consensus 3 ~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~~ 79 (341)
T 3q9b_A 3 VIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRWK 79 (341)
T ss_dssp EECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHHH
T ss_pred EEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhh
Confidence 68999999998875 6999999999999999999985 688999999999999999999999998743211
Q ss_pred h-----------------------hhHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccC-cceeeecCCCCC
Q 014167 81 H-----------------------LFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQL-CDIAINWAGGLH 136 (429)
Q Consensus 81 ~-----------------------~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~-~~~Ain~~GG~H 136 (429)
. ....+...|+++.|||+|+++|++|++++|++|.||+++++|+ ..+|++|||| |
T Consensus 80 ~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG-H 158 (341)
T 3q9b_A 80 AAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-H 158 (341)
T ss_dssp HTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-T
T ss_pred hcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-C
Confidence 0 0111244678899999999999999999999999999999985 5688999999 9
Q ss_pred CccccCCCCccccchHHHHHHHHHHh-CCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCC-CCCCcccCCC
Q 014167 137 HAKKCEASGFCYINDLVLGILELLKY-HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPG-TGDVKEIGER 214 (429)
Q Consensus 137 HA~~~~asGFC~~Ndiaiai~~ll~~-~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPg-tG~~~~~G~g 214 (429)
||++++++||||||||||||++|+++ .+||||||||||||||||++||+||+|||+|+|+++..|||| ||..+++|.+
T Consensus 159 HA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g 238 (341)
T 3q9b_A 159 HAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKG 238 (341)
T ss_dssp TCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCCG
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCCC
Confidence 99999999999999999999999998 599999999999999999999999999999999997779999 9999999999
Q ss_pred CCcceEEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEE
Q 014167 215 EGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLV 294 (429)
Q Consensus 215 ~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~ 294 (429)
+|++|++||||++|++|++|+.+|+.++ +.+++|+||+||+|||+|++.+||||.|+||+++|.+|++.++++++|+++
T Consensus 239 ~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~ 317 (341)
T 3q9b_A 239 AGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLV 317 (341)
T ss_dssp GGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEEE
T ss_pred CCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999999986 678999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchhHHHHHHHHHhhhhc
Q 014167 295 TGGGGYTKENVARCWTVETGILLD 318 (429)
Q Consensus 295 lggGGY~~~~var~w~~~t~~llg 318 (429)
++||||+++++++||...+..+.|
T Consensus 318 vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 318 VMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EECCCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999988877643
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=7.8e-85 Score=658.16 Aligned_cols=306 Identities=24% Similarity=0.382 Sum_probs=283.2
Q ss_pred EEEEEcccccCCCCCC--------CCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCC
Q 014167 7 ISYFYDGDVGSVYFGP--------NHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPD 78 (429)
Q Consensus 7 v~~~y~~~~~~~~~g~--------~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~ 78 (429)
..++|+|++..|..+. .|||+|.|+++++++|+++|| ++++|++||.++|++|||++||++|++.++.
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 4589999999999885 799999999999999999997 6899999999999999999999999987432
Q ss_pred chh----------------------hhHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccC-cceeeecCCCC
Q 014167 79 TQH----------------------LFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQL-CDIAINWAGGL 135 (429)
Q Consensus 79 ~~~----------------------~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~-~~~Ain~~GG~ 135 (429)
... ....+...|.++.|||+++++|++|++++|++|.||+.+++|+ ..+|++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 110 0011223467889999999999999999999999999999985 5688999999
Q ss_pred CCccccCCCCccccchHHHHHHHHHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCC-CCCCcccCCC
Q 014167 136 HHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPG-TGDVKEIGER 214 (429)
Q Consensus 136 HHA~~~~asGFC~~Ndiaiai~~ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPg-tG~~~~~G~g 214 (429)
|||++++|+||||||||||||++|+++++||||||||||||||||++||+||+|||+|||+++..|||| ||..+++|.+
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g 256 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAG 256 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSG
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999998789999 9999999999
Q ss_pred CCcceEEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEE
Q 014167 215 EGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLV 294 (429)
Q Consensus 215 ~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~ 294 (429)
+|++|++||||++|++|++|+.+|+.++ +++++|+||+||+|||||++.+||||.|+||+++|.+|++.++++++|+++
T Consensus 257 ~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~ 335 (362)
T 3men_A 257 EGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVI 335 (362)
T ss_dssp GGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEE
Confidence 9999999999999999999999999986 678999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchhHHHHHHHHHhhhhc
Q 014167 295 TGGGGYTKENVARCWTVETGILLD 318 (429)
Q Consensus 295 lggGGY~~~~var~w~~~t~~llg 318 (429)
++||||+++++++|+...+..|.+
T Consensus 336 vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 336 VQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988875
No 9
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=9e-84 Score=659.65 Aligned_cols=351 Identities=22% Similarity=0.335 Sum_probs=299.9
Q ss_pred CeEEEEEcccccCCC----CCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCch
Q 014167 5 DKISYFYDGDVGSVY----FGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (429)
Q Consensus 5 ~~v~~~y~~~~~~~~----~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~ 80 (429)
.+++|+||++|..|. .++.|||+|.|+++++++|+++||++.+++++|++||.+||++||+++||+.+.. .+.+.
T Consensus 36 ~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~-~~l~~ 114 (421)
T 2pqp_A 36 FTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGT-NPLSR 114 (421)
T ss_dssp TCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHC-CTTCS
T ss_pred CeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhc-chhhh
Confidence 579999999999998 6889999999999999999999999999999999999999999999999986532 11110
Q ss_pred hh-----hHh-hhh---------ccccCCCCCCC-hhHHHHHHHHHHHHHHHHHHHHccCcc--eeeecCCCCCCccccC
Q 014167 81 HL-----FRQ-ELT---------KYNLGEDCPVF-ENLFEFCQIYAGGTIDAARRLNNQLCD--IAINWAGGLHHAKKCE 142 (429)
Q Consensus 81 ~~-----~~~-~~~---------~~~l~~D~p~f-~~l~~~~~~~aGgsl~aa~~l~~g~~~--~Ain~~GG~HHA~~~~ 142 (429)
.+ ... ... ..+++.|++++ .++|+++++++|++|.|++++++|+++ +|++|||| |||++++
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~ 193 (421)
T 2pqp_A 115 LKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHST 193 (421)
T ss_dssp CCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTB
T ss_pred hhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCC
Confidence 00 000 000 11244566666 388999999999999999999999865 67789998 9999999
Q ss_pred CCCccccchHHHHHHHHHHhC--CcEEEEecccccCCcceeccccCCCEEEEeecccC-CCCCCCCCCCcccCCCCCcce
Q 014167 143 ASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFG-DLFFPGTGDVKEIGEREGKFY 219 (429)
Q Consensus 143 asGFC~~Ndiaiai~~ll~~~--~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g-~~ffPgtG~~~~~G~g~G~~~ 219 (429)
++||||||||||||++|++++ +||+|||||||||||||++||+||+|||+|+|+|+ ..||||||..+++|.|.|+||
T Consensus 194 a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~ 273 (421)
T 2pqp_A 194 AMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGF 273 (421)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTC
T ss_pred CCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccc
Confidence 999999999999999999864 89999999999999999999999999999999985 349999999999999999999
Q ss_pred EEeccCCCC----CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC--CCCCcccCHHHHHHHHHHHHhc-CCCE
Q 014167 220 AINVPLKDG----IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD--RLGCFNLSIDGHAECVRFVKKF-NLPL 292 (429)
Q Consensus 220 ~vNvPL~~g----~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gD--plg~~~ls~~g~~~~~~~l~~~-~~pv 292 (429)
++||||+.| ++|++|+.+|+.+|.|++++|+||+||+|||||++.+| |||.++||.++|+++++.|+++ ++|+
T Consensus 274 ~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grv 353 (421)
T 2pqp_A 274 NVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAV 353 (421)
T ss_dssp EEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCE
T ss_pred eeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCE
Confidence 999999754 68999999999999999999999999999999999998 9999999999999999999987 8899
Q ss_pred EEEcCCCCCchhHHHHHHHHHhhhhcCCCCCCCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCC
Q 014167 293 LVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQH 372 (429)
Q Consensus 293 l~lggGGY~~~~var~w~~~t~~llg~~~~~~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~~~ 372 (429)
++++||||++.++++||+.++++|+|.+++ .+|... ....++.+..+.|+++++... ++
T Consensus 354 v~vlEGGY~l~~l~~~~~a~~~~L~g~~~~-~l~~~~--------------~~~~p~~~a~~~i~~v~~~~~------~y 412 (421)
T 2pqp_A 354 VLALEGGHDLTAICDASEACVAALLGNRVD-PLSEEG--------------WKQKPNLNAIRSLEAVIRVHS------KY 412 (421)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHHHTTCCCC-GGGCGG--------------GGSCCCHHHHHHHHHHHHHHT------TT
T ss_pred EEEECCCCChHHHHHHHHHHHHHHcCCCCC-CCcccc--------------cccccCHHHHHHHHHHHHHHH------HH
Confidence 999999999999999999999999997654 344311 123356666777777765444 45
Q ss_pred CCcccc
Q 014167 373 APSVQM 378 (429)
Q Consensus 373 ~p~v~~ 378 (429)
|+|+|.
T Consensus 413 W~~l~~ 418 (421)
T 2pqp_A 413 WGCMQR 418 (421)
T ss_dssp CGGGCC
T ss_pred hHHHHh
Confidence 555553
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=77.63 E-value=2.3 Score=37.99 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=40.2
Q ss_pred EeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEE
Q 014167 221 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 221 vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~-Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~l 295 (429)
+|.-+.. .+-...+.-|+. .+-.++||+||+.+|. |...+-+.....-..+.+..+++.+++-+.+++++
T Consensus 54 iN~Gi~G-~tt~~~l~r~~~----~v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 54 IGRGISG-QTSYQFLLRFRE----DVINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp EEEECTT-CCHHHHHHHHHH----HTGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEeccCc-ccHHHHHHHHHH----HHHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 5655532 333344444443 2345899999999997 44433322222333455666777777767776654
No 11
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=63.90 E-value=20 Score=31.09 Aligned_cols=59 Identities=12% Similarity=0.294 Sum_probs=36.9
Q ss_pred eEEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHH----HHHHHHHHhcC
Q 014167 219 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFN 289 (429)
Q Consensus 219 ~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~----~~~~~~l~~~~ 289 (429)
...|.....+.+....+..++. .+...+||+||+.+|.. | +..+.+.| .++++.+++.+
T Consensus 47 ~v~~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 47 YVGRLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp EEEEEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhC
Confidence 3445555556666666665554 44568999999999975 3 23455554 44666666654
No 12
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=62.22 E-value=5.4 Score=32.17 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH-----HHHHHHHHHHHhcCCCEEEE
Q 014167 239 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI-----DGHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 239 ~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~-----~g~~~~~~~l~~~~~pvl~l 295 (429)
+++|..++++|.-++=|++++.|...+.++|.+-+.. ....+.+.++++.++.+=++
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 6789999999999999999999999999999987743 44667788888888766555
No 13
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=58.88 E-value=19 Score=30.85 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=37.6
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHH----HHHHHHHHHhcCCCEEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g----~~~~~~~l~~~~~pvl~l 295 (429)
.+|.-+. |.+-...+..+. ..+..++||+|||+.|..=.. . ..+.+. +.++++.+++.+.+++++
T Consensus 37 v~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~Vii~~G~ND~~----~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 37 VVNASIS-GDTSQQGLARLP----ALLKQHQPRWVLVELGGNDGL----R--GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp EEECCCT-TCCHHHHHHHHH----HHHHHHCCSEEEEECCTTTTS----S--SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEecCCC-CchHHHHHHHHH----HHHHhcCCCEEEEEeeccccc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3555443 223333444443 445567999999999975332 1 234444 455667777767776665
No 14
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=52.63 E-value=15 Score=37.13 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=45.1
Q ss_pred ccCCCCCCh-HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 014167 223 VPLKDGIDD-TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300 (429)
Q Consensus 223 vPL~~g~~D-~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY 300 (429)
|||-..+.. .++...|++.+ |-+++|+-..||+-.|-.++..+. .....+-+..+++.+.++++|-|||-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 15 VPRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp ----------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CcCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 344333333 56889999875 778999999999999988886431 33444445556666777777777874
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=51.09 E-value=12 Score=32.10 Aligned_cols=68 Identities=12% Similarity=0.245 Sum_probs=37.6
Q ss_pred EeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHH----HHHHHHHHhcCCCEEEEc
Q 014167 221 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFNLPLLVTG 296 (429)
Q Consensus 221 vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~----~~~~~~l~~~~~pvl~lg 296 (429)
+|.-+.. .+-..++..+. ..+..++||+||++.|..=.... ....+.+.| .++++.+++-+.+++++.
T Consensus 50 ~n~g~~G-~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 50 VDRGISG-QTTSEMLVRFR----QDVINLKPKAVVILAGINDIAHN---NGVIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp EEEECTT-CCHHHHHHHHH----HHTGGGCEEEEEEECCHHHHTTT---TSCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEcccCc-ccHHHHHHHHH----HHHHhCCCCEEEEEeecCccccc---cCCCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 5555533 33344444433 33445899999999997433221 111344444 446666776666766653
No 16
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=48.47 E-value=18 Score=30.65 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=38.1
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-CCCCCCCCCcccCHH----HHHHHHHHHHhcCCCEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGAD-SLAGDRLGCFNLSID----GHAECVRFVKKFNLPLLV 294 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~D-s~~gDplg~~~ls~~----g~~~~~~~l~~~~~pvl~ 294 (429)
.+|.... |.+-.+.+..+.. .+..++||+||++.|.. ... ..+.+ .+.++++.+++.+.++++
T Consensus 41 v~n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~~~~vvl 108 (185)
T 3hp4_A 41 LINASIS-GETSGGALRRLDA----LLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAANAMTAL 108 (185)
T ss_dssp EEECCCT-TCCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEECCcC-CccHHHHHHHHHH----HHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3455443 3334445544443 44568999999999963 222 23444 344567777777777766
Q ss_pred Ec
Q 014167 295 TG 296 (429)
Q Consensus 295 lg 296 (429)
++
T Consensus 109 ~~ 110 (185)
T 3hp4_A 109 ME 110 (185)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 17
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=48.10 E-value=94 Score=30.88 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc--CCCEEEEc
Q 014167 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTG 296 (429)
Q Consensus 243 ~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~--~~pvl~lg 296 (429)
...+...+||+|||.+|..=...+ + ...--.+.+..+++.+++. +.|++++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~-~-~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDG-D-GFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTT-C-CTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCC-C-CHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 344566799999999997543322 1 1122245667788888876 56777765
No 18
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=47.78 E-value=42 Score=29.21 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 238 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 238 f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
++.++.. +.+.+||+||+ +| | +.....+.+.+.++.+.+++.+.|++++.|
T Consensus 21 ~~~~~~~-~~~~~~D~vi~-~G------D-l~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 21 LEKFVKL-APDTGADAIAL-IG------N-LMPKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp HHHHHTH-HHHHTCSEEEE-ES------C-SSCTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred HHHHHHH-HhhcCCCEEEE-CC------C-CCCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4444433 34458998765 33 3 222222455666788888888889877754
No 19
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=47.41 E-value=27 Score=32.20 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=27.9
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCc
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCF 271 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~-Ds~~gDplg~~ 271 (429)
.+|.-.... +-.+.+..+..++.. ...+||+|+|..|. |...+.|++.+
T Consensus 61 v~N~G~~G~-tt~~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 61 PFVYGISGR-QWDDVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp EEECCCTTC-CGGGHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred EEEeecCCC-CHHHHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 355544332 223345555553321 23789999999998 55555555543
No 20
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=45.75 E-value=48 Score=32.54 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc---CCCEEEEcC
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGG 297 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~---~~pvl~lgg 297 (429)
.+...+|+.++.. +.+-+||+||+ | ||=.....-+.+.+..+.+.++++ ++|++++.|
T Consensus 43 ~~~~~~l~~~v~~-~~~~~~D~Vli-a------GDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 43 KDIYDSFKLCIKK-ILEIKPDVVLH-S------GDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSEEEE-C------SCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHHH-HHHcCCCEEEE-C------CCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 3456778887755 45679999887 3 343222233445555555555554 789877754
No 21
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=45.47 E-value=16 Score=32.57 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHH----HHHHHHHHHHhc--CCCEEEEc
Q 014167 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKF--NLPLLVTG 296 (429)
Q Consensus 246 ~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~----g~~~~~~~l~~~--~~pvl~lg 296 (429)
+..++||+|||+.|..=.. .+.+ .+.++++.+++. +.+++++.
T Consensus 89 l~~~~pd~vvi~~G~ND~~--------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~ 137 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG--------HTAEQVTGGIKAIVQLVNERQPQARVVVLG 137 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT--------SCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred cccCCCCEEEEEeecCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 4567999999999985332 3444 445566667665 45666654
No 22
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=44.74 E-value=31 Score=28.98 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=35.9
Q ss_pred EeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHH----HHHHHHhcCCCEEEEc
Q 014167 221 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAE----CVRFVKKFNLPLLVTG 296 (429)
Q Consensus 221 vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~----~~~~l~~~~~pvl~lg 296 (429)
+|.-.. |.+-..++..+. ..+...+||+||++.|..=... ....+.+.|.. +++.++ +.+++++.
T Consensus 43 ~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~----~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 43 INAGMP-GDTTEDGLKRLN----KEVLIEKPDEVVIFFGANDASL----DRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp EEEECT-TCCHHHHHHHHH----HHTGGGCCSEEEEECCTTTTCT----TSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred EeCCCC-CCCHHHHHHHHH----HhhhhcCCCEEEEEeeccccCc----cCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 555543 333444444443 3345689999999999754331 22456665544 344444 55666654
No 23
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=44.62 E-value=53 Score=28.70 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=39.9
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCCCCCcccCHHHH----HHHHHHHHhcCCCEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFNLPLLV 294 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~-f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~----~~~~~~l~~~~~pvl~ 294 (429)
.+|..+. |.+-...+..+..+ +.. .+||+|||+.|..=.... +....+.+.| .++++.+++.+.++++
T Consensus 46 v~n~g~~-G~~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~vil 118 (240)
T 3mil_A 46 ILQRGFK-GYTSRWALKILPEI----LKHESNIVMATIFLGANDACSA--GPQSVPLPEFIDNIRQMVSLMKSYHIRPII 118 (240)
T ss_dssp EEEEECT-TCCHHHHHHHHHHH----HHHCCCEEEEEEECCTTTTSSS--STTCCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEecCcC-cccHHHHHHHHHHH----hcccCCCCEEEEEeecCcCCcc--CCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4555553 33444555555543 333 799999999998332211 1223454444 4566677777777776
Q ss_pred Ec
Q 014167 295 TG 296 (429)
Q Consensus 295 lg 296 (429)
+.
T Consensus 119 ~~ 120 (240)
T 3mil_A 119 IG 120 (240)
T ss_dssp EC
T ss_pred Ec
Confidence 65
No 24
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=43.51 E-value=45 Score=31.84 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcC--CCEEEEcC
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFN--LPLLVTGG 297 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~--~pvl~lgg 297 (429)
++...+|+.++.. +++-+||+||+ +| |. =.-.-..+......+.++++++. +|++++.|
T Consensus 44 ~~~~~~l~~lv~~-~~~~~~D~vli-aG-D~----l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 44 EELKKALDKVVEE-AEKREVDLILL-TG-DL----LHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHHH-HHHHTCSEEEE-ES-CS----BSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHHHH-HHHhCCCEEEE-CC-cc----ccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 4566788887754 55679998776 33 31 22122234444444455555443 88877654
No 25
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=43.28 E-value=3.5 Score=33.16 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhcCCCEEEE
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~~~pvl~l 295 (429)
++|..++++|.-++=|++++.|...+.++|.+-+.. ....+.+.+|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 578899999999999999999999999999987743 34667788888887765444
No 26
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=43.25 E-value=54 Score=31.31 Aligned_cols=64 Identities=16% Similarity=0.362 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCc
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~ 302 (429)
.++...|++.+ |-+++|+-..||+-.|-.++.... ......+-+..+++.+.++++|-|||-..
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i 71 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQI 71 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHHH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHHH
Confidence 36888898876 667889989999999988887531 12233444445566677888888887543
No 27
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=41.82 E-value=22 Score=31.33 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhc--CCCEEEE
Q 014167 229 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 295 (429)
Q Consensus 229 ~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~--~~pvl~l 295 (429)
.+-.+.+..+.. .+...+||+|||+.|..=.. .....+.+.+..+++.+++. +.+++++
T Consensus 66 ~~~~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~----~~~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 66 WTIPQIASNINN----WLNTHNPDVVFLWIGGNDLL----LNGNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp CCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHH----HHCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hhHHHHHHHHHH----HhhccCCCEEEEEccccccC----CCCChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 334445554443 33467999999999974222 11234567888899998886 4556554
No 28
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=41.67 E-value=27 Score=30.25 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=31.1
Q ss_pred HHHHhcCC-CEEEEecCCCCCCCCCCCCcccCHHH----HHHHHHHHHhcC---------CCEEEEc
Q 014167 244 KVVETYAP-GAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKFN---------LPLLVTG 296 (429)
Q Consensus 244 ~i~~~f~P-d~Ivvq~G~Ds~~gDplg~~~ls~~g----~~~~~~~l~~~~---------~pvl~lg 296 (429)
..+..++| |+|||+.|..=. ...++.+.+. +.++++.+++.+ .+++++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~----~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDT----KAYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGG----SGGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHhCCCCCEEEEEecCccc----chhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 34556788 999999997422 2223455554 445667777766 5666663
No 29
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=39.89 E-value=30 Score=33.01 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCc
Q 014167 229 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (429)
Q Consensus 229 ~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~ 302 (429)
....++...|++.+ |-+++|+-..||+-.|--++.... ..+.+.+-+..+++.+.++++|-|||-..
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i 70 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQI 70 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHHH
Confidence 45678889999876 678999999999999976665320 12233444445555677777777777543
No 30
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=39.53 E-value=80 Score=30.11 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHH---HHHHHhcCCCEEEEcC
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAEC---VRFVKKFNLPLLVTGG 297 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~---~~~l~~~~~pvl~lgg 297 (429)
+++...|+.++. .+.+.+||+||+ +| |=.-..+-+.+....+ ++.++..+.|++++.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~-~G------Dl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILI-AG------DLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEE-ES------CSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC------CcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 456677877775 456789998876 33 3222222334444444 4444455789877754
No 31
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=39.33 E-value=8.5 Score=33.27 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=29.6
Q ss_pred HHHhcCCCEEEEecCCC-CCCCCCCC---CcccCHHHHH----HHHHHHHhcCCCEEEEc
Q 014167 245 VVETYAPGAIVLQCGAD-SLAGDRLG---CFNLSIDGHA----ECVRFVKKFNLPLLVTG 296 (429)
Q Consensus 245 i~~~f~Pd~Ivvq~G~D-s~~gDplg---~~~ls~~g~~----~~~~~l~~~~~pvl~lg 296 (429)
.+...+||+||++.|.. ...+.+.+ ....+.+.|. ++++.+++.+.+++++.
T Consensus 78 ~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 137 (216)
T 3rjt_A 78 DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLS 137 (216)
T ss_dssp HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEEC
T ss_pred HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 34567999999999963 22111100 0134455444 45666666677777663
No 32
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=38.48 E-value=48 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=26.2
Q ss_pred HHHHhcCC-CEEEEecCCCCCCCCCCCCcccCHHHH----HHHHHHHHhc
Q 014167 244 KVVETYAP-GAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKF 288 (429)
Q Consensus 244 ~i~~~f~P-d~Ivvq~G~Ds~~gDplg~~~ls~~g~----~~~~~~l~~~ 288 (429)
..+..++| |+|||..|.. |-......+.+.| .++++.+++.
T Consensus 94 ~~l~~~~p~d~VvI~~GtN----D~~~~~~~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTN----DIKPVHGGRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp HHHHHHCSCSEEEEECCTT----TTSGGGTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhCCCCCEEEEEeccC----CCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 44566899 9999999964 3333333455544 4566667764
No 33
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=36.07 E-value=19 Score=29.15 Aligned_cols=55 Identities=9% Similarity=0.286 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhcCCCEEE
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLV 294 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~~~pvl~ 294 (429)
++|..++++|+-++=|++++.|...+.++|.+-+.. ....+...++++.++.+=+
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 94 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV 94 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 588899999999999999999999999999986644 4566778888887775543
No 34
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=35.16 E-value=57 Score=33.86 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCch
Q 014167 237 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 237 ~f~~ii~~i~~~f~Pd~Ivvq~G-~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~ 303 (429)
.++..|..+.+.|+|++|+|... .-...||.+.. +++.++. +.||+.+--.||.-.
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~~----------v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPNG----------ISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHHH----------HHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHHH----------HHHHhcC-CCCEEEEECCCcCCc
Confidence 34555667778899997666544 77777775422 3344433 788888888888764
No 35
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=35.07 E-value=37 Score=33.43 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=39.5
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEecCCCCCCCCCCCCcccCHHH----HHHHHHHHHhcCCCEEE
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAP-GAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKFNLPLLV 294 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~P-d~Ivvq~G~Ds~~gDplg~~~ls~~g----~~~~~~~l~~~~~pvl~ 294 (429)
.+|.-+. |.+-..++.- ..+.+++..++| |+|||+.|..=... ....+.+. +.++++.+++.+.++++
T Consensus 202 v~N~Gis-G~tt~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~~----~~~~~~~~~~~~l~~ii~~lr~~~a~vil 274 (375)
T 2o14_A 202 VRNMASG-GQIARGFRND--GQLEAILKYIKPGDYFMLQLGINDTNP----KHKESEAEFKEVMRDMIRQVKAKGADVIL 274 (375)
T ss_dssp EEECCCT-TCCHHHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGCG----GGCCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEeccC-CCcHhhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCCc----cCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5676654 3333344420 123456678899 99999999743221 12234444 44566777776666665
Q ss_pred E
Q 014167 295 T 295 (429)
Q Consensus 295 l 295 (429)
+
T Consensus 275 v 275 (375)
T 2o14_A 275 S 275 (375)
T ss_dssp E
T ss_pred E
Confidence 5
No 36
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=34.37 E-value=18 Score=28.96 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhcCCCEEEE
Q 014167 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLVT 295 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~~~pvl~l 295 (429)
++|..++++|.-++=|++++.|...+.++|.+-+.. ....+...++++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 578899999999999999999999999999987743 34566788888887766444
No 37
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=33.79 E-value=42 Score=31.72 Aligned_cols=34 Identities=9% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD 266 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gD 266 (429)
.+...+...|..++++++|++||.-.|.|.|.+.
T Consensus 131 ~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpDH 164 (273)
T 3dff_A 131 DLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDH 164 (273)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCCCCCChHH
Confidence 3455666677789999999999998777766543
No 38
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=32.08 E-value=49 Score=31.15 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD 266 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gD 266 (429)
.+...+...|..++++++||+|+.-.|.|.|.+.
T Consensus 128 ~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH 161 (270)
T 3dfi_A 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH
Confidence 3445566677789999999999998877766544
No 39
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=30.78 E-value=38 Score=30.03 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHhCCcEEEEecccccCC
Q 014167 159 LLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 159 ll~~~~RVl~IDiDvHHGD 177 (429)
|.++..||++||.|..+|+
T Consensus 27 la~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 27 LGDRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HHHTTCCEEEEECCTTSCC
T ss_pred HHhcCCeEEEEeCCCCCCC
Confidence 3355789999999998765
No 40
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=29.25 E-value=31 Score=32.97 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 301 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~ 301 (429)
+..+...|++.+ |-+++|+-..||+-.|--++.... ..+.+.+-+..+++.+.++++|-|||-.
T Consensus 17 ~~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~ 80 (298)
T 2rd5_A 17 PDYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSPE------LKSSVVSDLVLLACVGLRPILVHGGGPD 80 (298)
T ss_dssp -CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCHH------HHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred hHHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCChh------HHHHHHHHHHHHHHCCCCEEEEECCcHH
Confidence 457889999876 678999999999999976665310 1122333344455567777877777643
No 41
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=28.96 E-value=43 Score=30.13 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=15.6
Q ss_pred HHHHhCCcEEEEecccccCC
Q 014167 158 ELLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 158 ~ll~~~~RVl~IDiDvHHGD 177 (429)
.|.++..||++||.|..+|+
T Consensus 26 ~la~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 26 GLAQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp HHHHTTCCEEEEECCCSSCC
T ss_pred HHHhCCCcEEEEECCCCCCC
Confidence 33456789999999997765
No 42
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=27.72 E-value=42 Score=29.76 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHHH----HHHHHHHHHhc--CCCEEEE
Q 014167 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKF--NLPLLVT 295 (429)
Q Consensus 246 ~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g----~~~~~~~l~~~--~~pvl~l 295 (429)
+..++||+|||..|..=. | .+.+. +..+++.+++. +.+++++
T Consensus 90 l~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 90 LENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp TSSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456899999999997544 2 34444 44566666665 5566665
No 43
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=27.36 E-value=53 Score=30.86 Aligned_cols=63 Identities=10% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCc
Q 014167 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~ 302 (429)
.+...|++.+ |-+++|+-..||+-.|--++.... ..+.+.+-+..+++.+.++++|-|||-..
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i 66 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQEN------AKKAFIQDIILLKYTGIKPIIVHGGGPAI 66 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHSHH------HHHHHHHHHHHHHHTTCEEEEEECCSHHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCChh------HHHHHHHHHHHHHHCCCcEEEEECCcHHH
Confidence 5677888875 778999988999999976664310 01223333444555577777777777543
No 44
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=27.10 E-value=1.2e+02 Score=29.58 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCC-CCcccCHHHHHHHHH---HHHhcCCCEEEEcC
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRL-GCFNLSIDGHAECVR---FVKKFNLPLLVTGG 297 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDpl-g~~~ls~~g~~~~~~---~l~~~~~pvl~lgg 297 (429)
.++...+|+.++ .++.+.+||+||+ + ||=. -.-+.+...+..+.+ .+.+. +|++++.|
T Consensus 25 ~~~~~~~l~~l~-~~~~~~~~D~vli-a------GDl~hd~~~~~~~~~~~~~~~l~~l~~~-~~v~~i~G 86 (379)
T 3tho_B 25 REELKKALDKVV-EEAEKREVDLILL-T------GDLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPG 86 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCSEEEE-C------SCCBSCSSSCCHHHHHHHHHHHHHHHHH-SCEEECCC
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-C------CCccccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEcC
Confidence 355777777766 4567789999988 3 4433 223345554444444 44444 88877654
No 45
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.72 E-value=50 Score=29.91 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=15.1
Q ss_pred HHHhCCcEEEEecccccCC
Q 014167 159 LLKYHARVLYIDIDVHHGD 177 (429)
Q Consensus 159 ll~~~~RVl~IDiDvHHGD 177 (429)
|.++..||++||.|...|+
T Consensus 27 la~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 27 LAQLGHDVTIVDADITMAN 45 (263)
T ss_dssp HHHTTCCEEEEECCCSSSS
T ss_pred HHhCCCcEEEEECCCCCCC
Confidence 3345789999999998765
No 46
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=26.64 E-value=2.3e+02 Score=22.68 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCC
Q 014167 236 RLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 298 (429)
Q Consensus 236 ~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggG 298 (429)
..+.+++..++++|+..+.++-.-.|-.. +-+..|+++ +-.+|++++.-.
T Consensus 38 ~~~~p~l~~~A~~~~gk~~f~~vd~d~~~-~~a~~~gi~------------~~~iPtl~i~~~ 87 (133)
T 2djk_A 38 KELSDKLKPIAEAQRGVINFGTIDAKAFG-AHAGNLNLK------------TDKFPAFAIQEV 87 (133)
T ss_dssp HHHHHHHHHHHHSSTTTSEEEEECTTTTG-GGTTTTTCC------------SSSSSEEEEECT
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEchHHhH-HHHHHcCCC------------cccCCEEEEEec
Confidence 36778888899999999888888887543 234456663 224898888753
No 47
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=25.85 E-value=70 Score=32.98 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCEEEEecCC-CCCCCCCCCCcccCHHHHHHHHHHHH-hcCCCEEEEcCCCCCch
Q 014167 240 TIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKE 303 (429)
Q Consensus 240 ~ii~~i~~~f~Pd~Ivvq~G~-Ds~~gDplg~~~ls~~g~~~~~~~l~-~~~~pvl~lggGGY~~~ 303 (429)
..|..+.+.|+|++|+|...+ -...||.+.. +++.++ ..++||+.+--.||.-.
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~----------v~~~~~~~~g~pVi~v~tpgf~g~ 133 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDLQN----------FVRRASLSTTADVLLADVNHYRVN 133 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCCHHH----------HHHHHHHHCSSEEEECCCCTTTCC
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccCHHH----------HHHHhhhccCCCEEEeeCCCcccc
Confidence 445566778999998887665 6666765422 333333 45899999999999864
No 48
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=25.78 E-value=1.6e+02 Score=29.80 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh
Q 014167 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK 287 (429)
Q Consensus 232 ~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~ 287 (429)
.+....|+.++.. +.+.+||+||+ + ||=.-...-+.+....+.+.+++
T Consensus 54 ~d~~~~l~~ll~~-~~~~~~D~Vli-a------GDlfd~~~~~~~~~~~~~~~L~r 101 (431)
T 3t1i_A 54 NDTFVTLDEILRL-AQENEVDFILL-G------GDLFHENKPSRKTLHTCLELLRK 101 (431)
T ss_dssp THHHHHHHHHHHH-HHHTTCSEEEE-C------SCCBSSSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-HhhcCCCEEEE-c------CccccCCCCCHHHHHHHHHHHHH
Confidence 3556677777754 56689999998 3 34333334566666666666653
No 49
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=25.50 E-value=63 Score=28.21 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 014167 228 GIDDTSFTRLFKTIISKVVETYAPGAIVLQCG 259 (429)
Q Consensus 228 g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G 259 (429)
|.++.....-.+ .|..++++.+||+|.+|=-
T Consensus 23 g~~~~~~~~r~~-~i~~~i~~~~pDIi~LQEv 53 (256)
T 4fva_A 23 GLDGRSLLTRMK-AVAHIVKNVNPDILFLQEV 53 (256)
T ss_dssp TTCCTTHHHHHH-HHHHHHHHHCCSEEEEEEE
T ss_pred CCCCcCHHHHHH-HHHHHHHHcCCCEEEEEec
Confidence 333333333333 3456778899999999964
No 50
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.59 E-value=42 Score=29.87 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=16.0
Q ss_pred HHHh-CCcEEEEecccccCCcc
Q 014167 159 LLKY-HARVLYIDIDVHHGDGV 179 (429)
Q Consensus 159 ll~~-~~RVl~IDiDvHHGDGt 179 (429)
|.+. .+||++||+|...|+=+
T Consensus 29 la~~~g~~VlliD~D~~~~~l~ 50 (245)
T 3ea0_A 29 LSQEPDIHVLAVDISLPFGDLD 50 (245)
T ss_dssp HTTSTTCCEEEEECCTTTCCGG
T ss_pred HHhCcCCCEEEEECCCCCCCHH
Confidence 3344 79999999999877644
No 51
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=23.26 E-value=1.7e+02 Score=26.00 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=23.3
Q ss_pred EEeccCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEecCCCC
Q 014167 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAP-GAIVLQCGADS 262 (429)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~P-d~Ivvq~G~Ds 262 (429)
.+|..+.. -+-.+++.. ..+..++...+| |+||++.|..=
T Consensus 35 v~N~gi~G-~tt~~~~~~--~r~~~~l~~~~~~d~ViI~~G~ND 75 (233)
T 1k7c_A 35 VVNDAVAG-RSARSYTRE--GRFENIADVVTAGDYVIVEFGHND 75 (233)
T ss_dssp EEECCCTT-CCHHHHHHT--THHHHHHHHCCTTCEEEECCCTTS
T ss_pred EEecccCC-ccHHHHHHc--ccHHHHHhhCCCCCEEEEEccCCC
Confidence 45665543 334455431 123445555666 99999999843
No 52
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=23.14 E-value=45 Score=29.37 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=30.6
Q ss_pred cCCCEEEEecCC-CCCCCCCCCCccc-C----HHHHHHHHHHHHhc--CCCEEEE
Q 014167 249 YAPGAIVLQCGA-DSLAGDRLGCFNL-S----IDGHAECVRFVKKF--NLPLLVT 295 (429)
Q Consensus 249 f~Pd~Ivvq~G~-Ds~~gDplg~~~l-s----~~g~~~~~~~l~~~--~~pvl~l 295 (429)
.+||+|+|+.|. |...+-+++.+.- + ...+.++++.+++. +.+++++
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~ 135 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFI 135 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 499999999997 4444445554421 1 12566678888776 6777765
No 53
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.13 E-value=1.3e+02 Score=26.72 Aligned_cols=132 Identities=11% Similarity=0.200 Sum_probs=46.0
Q ss_pred cCCCCCCccccCCCCccccchHHHHHHHHHHhCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcc
Q 014167 131 WAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKE 210 (429)
Q Consensus 131 ~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~ 210 (429)
..+|+.........|-+++-.+.++...+++... ++.=-+ . .+.. ...++|+.... .|+..+
T Consensus 41 l~p~m~~vG~~w~~g~~~~~~~~~~~~~~~~~l~-~l~~~~--~-~~~~----~~~~~vll~~~----------~gd~H~ 102 (210)
T 1y80_A 41 LIAGMDRVGVLFKNNEMFVPEVLMSANAMNAGVE-VVKQSQ--Q-AFDM----PSVGKIVLGTV----------KGDLHD 102 (210)
T ss_dssp ------------------------------------------------C----CCCCEEEEEEB----------TTCCCC
T ss_pred HHHHHHHHHHHHcCCceeHHHHHHHHHHHHHHHH-HHHHHh--c-cccC----CCCCEEEEEeC----------CCcccH
Confidence 3456677777777788888777776654433221 111000 0 0100 23456777654 355666
Q ss_pred cCCC------CCcce-EEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHH
Q 014167 211 IGER------EGKFY-AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVR 283 (429)
Q Consensus 211 ~G~g------~G~~~-~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~ 283 (429)
+|.. ...|| .+++.. ...-+ .+ ...+++.+||+|.+++-... +.....+.++
T Consensus 103 iG~~~va~~l~~~G~~v~~LG~--~vp~~-------~l-~~~~~~~~~d~v~lS~~~~~-----------~~~~~~~~i~ 161 (210)
T 1y80_A 103 IGKNLVAMMLESGGFTVYNLGV--DIEPG-------KF-VEAVKKYQPDIVGMSALLTT-----------TMMNMKSTID 161 (210)
T ss_dssp HHHHHHHHHHHHTTCEEEECCS--SBCHH-------HH-HHHHHHHCCSEEEEECCSGG-----------GTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECCC--CCCHH-------HH-HHHHHHcCCCEEEEeccccc-----------cHHHHHHHHH
Confidence 6643 11223 233322 12222 22 34566789999999885321 3445667788
Q ss_pred HHHhcCC---CEEEEcCCCCC
Q 014167 284 FVKKFNL---PLLVTGGGGYT 301 (429)
Q Consensus 284 ~l~~~~~---pvl~lggGGY~ 301 (429)
.+++.+. ..+++||.+.+
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCC
T ss_pred HHHhcCCCCCCeEEEECCCCC
Confidence 8887643 23444554444
No 54
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=23.06 E-value=1.6e+02 Score=26.78 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcc----cCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 234 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFN----LSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 234 y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~----ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
....++.++..+. +-+||+||+ + ||=..... -+.+.|..+.+.++.+++|++++.|
T Consensus 36 ~~~~l~~~~~~~~-~~~~d~vi~-~------GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~G 95 (322)
T 2nxf_A 36 SADLLRDAVLQWR-RERVQCVVQ-L------GDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWG 95 (322)
T ss_dssp HHHHHHHHHHHHH-HTTCSEEEE-C------SCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHHH-hcCCCEEEE-C------CCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 4556666665543 478998776 2 34221111 1245667788888888889888764
No 55
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=22.76 E-value=56 Score=28.88 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC
Q 014167 236 RLFKTIISKVVETYAPGAIVLQCGA 260 (429)
Q Consensus 236 ~~f~~ii~~i~~~f~Pd~Ivvq~G~ 260 (429)
..++.++..+ ..-+.|+||+-|+.
T Consensus 118 ~~l~~~l~~l-~~~~yD~viiD~pp 141 (254)
T 3kjh_A 118 SFLGSVVSAL-FLDKKEAVVMDMGA 141 (254)
T ss_dssp HHHHHHHHHH-HHTCCSEEEEEECT
T ss_pred HHHHHHHHHh-ccCCCCEEEEeCCC
Confidence 4466666665 23467999998875
No 56
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=22.24 E-value=1.5e+02 Score=29.81 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHH----HHHHHHHHHHhcCCCEEEEcC
Q 014167 228 GIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 228 g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~----g~~~~~~~l~~~~~pvl~lgg 297 (429)
.++.+.++...+.++..=+.....+.|+|-.|......|.+|.|....+ |...+++.+++.+.++-+=.+
T Consensus 25 ~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Giw~~ 98 (417)
T 1szn_A 25 DIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYST 98 (417)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEEEEEeC
Confidence 4677888887777766555778899999999999888888998877655 889999999999887644333
No 57
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=22.24 E-value=1.1e+02 Score=28.25 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=35.2
Q ss_pred CCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHh---cCCCEEEEcCCCCC
Q 014167 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK---FNLPLLVTGGGGYT 301 (429)
Q Consensus 250 ~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~---~~~pvl~lggGGY~ 301 (429)
++..||+-.|--++..+ +...++.+-...+++.+.. .+.++++|-|||-.
T Consensus 11 ~~~~iViKiGGs~l~~~--~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~ 63 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQ--TGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNI 63 (255)
T ss_dssp BCSEEEEEECGGGTSCS--SSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTT
T ss_pred cCCEEEEEECHHHhCCC--CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHH
Confidence 56789999999988765 4555777766666666554 45677777777654
No 58
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=21.97 E-value=1.8e+02 Score=25.83 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcC
Q 014167 234 FTRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (429)
Q Consensus 234 y~~~f~~ii~~i~~~-f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lgg 297 (429)
....++.++..+.+. -+||+||+ +| |..... +...+..+.+.+++++.|++++.|
T Consensus 24 ~~~~l~~~l~~~~~~~~~~d~vi~-~G-Dl~~~~-------~~~~~~~~~~~l~~l~~p~~~v~G 79 (274)
T 3d03_A 24 VNAANADVVSQLNALRERPDAVVV-SG-DIVNCG-------RPEEYQVARQILGSLNYPLYLIPG 79 (274)
T ss_dssp HHHHHHHHHHHHHTCSSCCSEEEE-ES-CCBSSC-------CHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEE-CC-CCCCCC-------CHHHHHHHHHHHHhcCCCEEEECC
Confidence 345667777665544 26788765 33 332211 234566777888888889887765
No 59
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=21.80 E-value=84 Score=26.72 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCEEEEec
Q 014167 241 IISKVVETYAPGAIVLQC 258 (429)
Q Consensus 241 ii~~i~~~f~Pd~Ivvq~ 258 (429)
.|..++++.+||+|.+|=
T Consensus 25 ~i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 25 GLCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEe
Confidence 345667889999999995
No 60
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=21.02 E-value=1.9e+02 Score=28.31 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=22.0
Q ss_pred eEEeccCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 014167 219 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQ 257 (429)
Q Consensus 219 ~~vNvPL~~g~~D~~y~~~f~~ii~~i~~~f~Pd~Ivvq 257 (429)
|.+|++ .+.-.+..-.++. -+.+++++++||+|++.
T Consensus 66 ~~l~~~--~~~~~~~~~~~~~-~l~~~l~~~kPD~Vlv~ 101 (385)
T 4hwg_A 66 YFLEVA--ADNTAKSIGLVIE-KVDEVLEKEKPDAVLFY 101 (385)
T ss_dssp EECCCC--CCCSHHHHHHHHH-HHHHHHHHHCCSEEEEE
T ss_pred eecCCC--CCCHHHHHHHHHH-HHHHHHHhcCCcEEEEE
Confidence 445542 3333334334444 35678899999999986
No 61
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=21.00 E-value=1.8e+02 Score=26.10 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=32.7
Q ss_pred HHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcC
Q 014167 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 319 (429)
Q Consensus 246 ~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~ 319 (429)
+-+.+||+||.+.+. .....+.+++.++|++++-. .+...+.+ |...++.++|+
T Consensus 56 i~~l~PDLIi~~~~~-----------------~~~~~~~L~~~gipvv~~~~--~~~~~~~~-~i~~lg~~~g~ 109 (260)
T 2q8p_A 56 VKKLKPTHVLSVSTI-----------------KDEMQPFYKQLNMKGYFYDF--DSLKGMQK-SITQLGDQFNR 109 (260)
T ss_dssp HHHTCCSEEEEEGGG-----------------HHHHHHHHHHHTSCCEEECC--SSHHHHHH-HHHHHHHHTTC
T ss_pred HHhcCCCEEEecCcc-----------------CHHHHHHHHHcCCcEEEecC--CCHHHHHH-HHHHHHHHhCC
Confidence 345799999975321 13456778888999988742 23333333 33445566664
No 62
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=20.64 E-value=90 Score=27.09 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=13.9
Q ss_pred HHHHHHhcCCCEEEEec
Q 014167 242 ISKVVETYAPGAIVLQC 258 (429)
Q Consensus 242 i~~i~~~f~Pd~Ivvq~ 258 (429)
|..++++.+||+|.+|=
T Consensus 32 i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 32 VCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 44667889999999994
No 63
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=20.47 E-value=3e+02 Score=24.37 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCCCCCcccC-HHHHHHHHHHHHhcCCCEEE
Q 014167 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS-IDGHAECVRFVKKFNLPLLV 294 (429)
Q Consensus 231 D~~y~~~f~~ii~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls-~~g~~~~~~~l~~~~~pvl~ 294 (429)
++..+..++..+ .++.......|++..|.+.. -.+... .+.+.++.+.+++.++++++
T Consensus 80 ~~~~~~~~~~~i-~~a~~lG~~~v~~~~g~~~~-----~~~~~~~~~~l~~l~~~a~~~gv~l~~ 138 (272)
T 2q02_A 80 TEEVVKKTEGLL-RDAQGVGARALVLCPLNDGT-----IVPPEVTVEAIKRLSDLFARYDIQGLV 138 (272)
T ss_dssp CHHHHHHHHHHH-HHHHHHTCSEEEECCCCSSB-----CCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHH-HHHHHhCCCEEEEccCCCch-----hHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 345566676666 56788999999998776532 234444 67777777888877776544
No 64
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=20.44 E-value=3.2e+02 Score=26.48 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCCCCCCcccCH----HHHHHHHHHHHhcCC-CEEEEcCCCCCc
Q 014167 233 SFTRLFKTIISKVVETYA--PGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNL-PLLVTGGGGYTK 302 (429)
Q Consensus 233 ~y~~~f~~ii~~i~~~f~--Pd~Ivvq~G~Ds~~gDplg~~~ls~----~g~~~~~~~l~~~~~-pvl~lggGGY~~ 302 (429)
.+...+...+..++++|+ |+.|++..+ ..|.+. .+. +.+.++++.+++.+. .+|+++|-+|+-
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~--~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGS--WDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCS--SCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCC--CCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 456667777777888885 456666554 556653 333 344567788888754 466677667764
Done!