RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 014167
         (429 letters)



>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score =  304 bits (780), Expect = e-101
 Identities = 149/362 (41%), Positives = 227/362 (62%), Gaps = 3/362 (0%)

Query: 9   YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADY 68
           Y Y  +  S     +    P R  M H L+ +Y LHK+M I +P  A   E+A FH+  Y
Sbjct: 5   YIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 69  VEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIA 128
           ++ L +++ +       +  +Y LG DCP  E +F++     G TI AA+ L + +C +A
Sbjct: 63  LQHLQKVSQEGDDDHP-DSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121

Query: 129 INWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDR 188
           INW+GG HHAKK EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181

Query: 189 VMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVET 248
           VMTVS HKF   FFPGTGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V + 
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241

Query: 249 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARC 308
           + P A+VLQ GAD++AGD +  FN++  G  +C++++ ++ L  L+ GGGGY   N ARC
Sbjct: 242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARC 301

Query: 309 WTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLR 368
           WT  TG++L   L +EIP++E+   + P+  L I      + N    +  I   +  NL+
Sbjct: 302 WTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 361

Query: 369 SI 370
            +
Sbjct: 362 HV 363


>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score =  247 bits (631), Expect = 4e-79
 Identities = 113/371 (30%), Positives = 168/371 (45%), Gaps = 8/371 (2%)

Query: 6   KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHS 65
           K+      D G   +  NHP+K  R+ +      + +L  + E+ +   A   EL  FH+
Sbjct: 2   KVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHT 61

Query: 66  ADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLC 125
            DY+  L                    G + PV   +F    +  G T+ A         
Sbjct: 62  EDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNV 121

Query: 126 DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHAR-VLYIDIDVHHGDGVEEAFY 184
               N AGG+HHA K  A+GFCYIN+  +GI  L K   + +LYID+D HH DGV+EAFY
Sbjct: 122 AF--NPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFY 179

Query: 185 FTDRVMTVSFHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 243
            TD+V  +S H+  +  FP   G ++EIGE +GK Y +N+PL  G++D  F    +  + 
Sbjct: 180 DTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLE 239

Query: 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303
            V E + P   +LQ G D L  D L  FNLS     +    V++     +  GGGGY   
Sbjct: 240 IVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPY 299

Query: 304 NVARCWTVETGILLDTELPNEIPEN--EYIKYFAPEC--SLRIPNGHIENLNSKSYLSTI 359
            +AR WT+    L   E+P ++     E +K    E        +  +E L        +
Sbjct: 300 ALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEV 359

Query: 360 KMQVLENLRSI 370
           + +V + L   
Sbjct: 360 RKEVKDTLEKA 370


>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score =  183 bits (464), Expect = 2e-54
 Identities = 76/377 (20%), Positives = 138/377 (36%), Gaps = 41/377 (10%)

Query: 21  GPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLH-----RI 75
              HP    R+      +    L  + E  R  KA   EL   HS  +V         R+
Sbjct: 24  NSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRL 83

Query: 76  TPDTQHLFRQELTKYNLGEDC--------PVFENL--FEFCQIYAGGTIDAARRLNNQLC 125
             D   L      +  +   C         ++  L      +  AG   D A ++ ++  
Sbjct: 84  KLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASREL 143

Query: 126 DIAINWAGGL-HHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEA 182
                      HHA    A GFC+ N + +   +L +    +++L +D DVHHG+G ++ 
Sbjct: 144 KNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQT 203

Query: 183 FYFTDRVMTVSFHKFGDLF-FPGTGDVKEIGEREGKFYAINVPLKD----GIDDTSFTRL 237
           FY    V+ +S H+  D   FPG+G V E+G   G+ + +NV         + D  +   
Sbjct: 204 FYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAA 263

Query: 238 FKTIISKVVETYAPGAIVLQCGADSLAGD--RLGCFNLSIDGHAECVRFVKKF-NLPLLV 294
           F+ ++  +   ++P  +++  G D+  G    LG +++S        + +       +++
Sbjct: 264 FRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVL 323

Query: 295 TGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKS 354
              GG+    +          LL   +    P +E      P            NLN+  
Sbjct: 324 ALEGGHDLTAICDASEACVAALLGNRVD---PLSEEGWKQKP------------NLNAIR 368

Query: 355 YLSTIKMQVLENLRSIQ 371
            L  +     +    +Q
Sbjct: 369 SLEAVIRVHSKYWGCMQ 385


>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
           7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 342

 Score = 26.3 bits (56), Expect = 6.8
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 275 IDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 319
           + GH + V    +F    +V+G      +N  + W+  TG  L T
Sbjct: 12  LKGHDDHVITCLQFCGNRIVSGS----DDNTLKVWSAVTGKCLRT 52


>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant
           protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
          Length = 144

 Score = 25.8 bits (56), Expect = 7.3
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 45  KKMEIYRPHKAYPVELAQFHSA--DYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENL 102
           KK E+Y  ++  PV L  +     D+      ++  TQ L     T+ + GE+       
Sbjct: 72  KKFEVYENNQKLPVRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDYTK 131

Query: 103 FEFCQ 107
             F +
Sbjct: 132 LVFAK 136


>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
           {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 225

 Score = 25.7 bits (55), Expect = 10.0
 Identities = 15/141 (10%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 293 LVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRI-------PNG 345
           L++G        +     +   +  +        +    K+F+ E + +         + 
Sbjct: 41  LLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSM 100

Query: 346 HIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHT 405
                N     ST      E++  ++     +   +    Y        ++    +++  
Sbjct: 101 RSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLK 160

Query: 406 QDKQIQRDDEFYEGDNDNDHM 426
           +   ++ D+    GD++ND  
Sbjct: 161 EMYSLEYDEILVIGDSNNDMP 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,731,468
Number of extensions: 85641
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 13
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)