Query 014168
Match_columns 429
No_of_seqs 95 out of 104
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 02:30:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2709 Uncharacterized conser 100.0 4.7E-41 1E-45 341.1 7.2 259 135-429 181-468 (560)
2 PF06911 Senescence: Senescenc 99.9 1.8E-26 3.9E-31 210.3 -0.9 119 309-429 1-128 (179)
3 PF12634 Inp1: Inheritance of 97.8 0.00019 4.2E-09 65.5 10.2 85 153-253 56-144 (145)
4 PF06911 Senescence: Senescenc 56.0 4.7 0.0001 37.2 0.6 85 301-392 4-89 (179)
5 PF10709 DUF2511: Protein of u 47.4 8.2 0.00018 33.1 0.7 27 179-207 6-32 (87)
6 KOG0248 Cytoplasmic protein Ma 28.1 21 0.00044 40.9 0.2 25 17-42 611-635 (936)
7 PF06776 IalB: Invasion associ 27.0 21 0.00046 31.2 0.0 15 410-424 120-134 (134)
8 PF08400 phage_tail_N: Prophag 26.8 1.3E+02 0.0029 27.7 5.1 12 141-152 17-28 (134)
9 cd00837 EVH1 EVH1 (Enabled, Va 24.0 4.6E+02 0.0099 22.4 9.3 19 224-245 81-99 (104)
10 TIGR02775 TrbG_Ti P-type conju 18.3 5.5E+02 0.012 24.6 7.7 78 143-233 1-102 (206)
No 1
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.7e-41 Score=341.13 Aligned_cols=259 Identities=19% Similarity=0.232 Sum_probs=218.6
Q ss_pred cceEEEec-CeEEEEecCC-ccccccccceEEEEEecCCcceE-----EEEEecCccccccCCC-CCeeeccCeeeEEec
Q 014168 135 EHVLVKIP-GAIVHLIERE-QSVELASGELYIVSLSQGDNVVA-----VFARVGDEIQWPLAKD-EPAVKLDDSHYFFTL 206 (429)
Q Consensus 135 ee~Ll~IP-GaqlhLVd~~-~Sv~la~G~LsIVrl~q~~~~~A-----vf~rVgD~~qWPL~kD-~PVvKld~~hY~Fsl 206 (429)
..+|+.|| |+|+|+|++. .+.+.+||||+|+||.|...+-| +|+|||| |+|||..+ .||+++.-|.|||++
T Consensus 181 ~g~i~~ip~gvq~f~V~~~~~~ap~~p~yL~i~rF~q~S~~~~~n~~~af~qv~~-WlYPLvp~~tpvl~~e~GAy~fpd 259 (560)
T KOG2709|consen 181 AGLIYFIPEGVQLFTVDGEKTTAPTAPTYLQILRFPQPSDGGASNDTLAFMQVGP-WLYPLVPAKTPVLRNEFGAYLFPD 259 (560)
T ss_pred cceEEEccCCeEEEEeccccccCCCCCceeEEEEecCCCCCccccCCcccceecc-cccccCcccCcceecccceEecCC
Confidence 34899999 9999999999 78899999999999999887754 8999999 99999999 999999999999999
Q ss_pred cCCCCCCCCcccccCceeeE-EEEEecCcchH-HHHHHHHHHhhcCceeeeeeeccCccchhhhccChhhhhhhhhhhcc
Q 014168 207 RVPENGSLETDQVHHEVLNY-GLTIATKGQKH-LLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELM 284 (429)
Q Consensus 207 ~~p~~~~~~~~~~~~~~LsY-GVtfsse~~e~-~l~~LD~lL~q~S~Fsvq~~~~~~~~~~~~~~~~~~~l~~~~~k~~~ 284 (429)
++++. ++++ ||.|++++|+. .+++|+.+|+..+||--+... +.++ .+
T Consensus 260 ~~~q~-----------pg~~vgi~Lsse~Q~~r~~~Ele~~~q~f~D~le~a~~--~tv~---------ql--------- 308 (560)
T KOG2709|consen 260 PTPQN-----------PGMTVGILLSSEIQERRLIEELEIVLQEFTDFLEQAEP--STVL---------QL--------- 308 (560)
T ss_pred CcccC-----------CCCEEEEEEcchhhhhhhHHHHHHHHHHHHHHHHhhCC--ccee---------ec---------
Confidence 99993 3454 99999999654 677899999998888765321 1111 00
Q ss_pred cccccccccccCCCcCcchhHHHHHHHhcccceeeeeeeeccceecccccchhhhhhccCCCCC-CccCHHHHHHHHHHH
Q 014168 285 GKSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQ-SEISPDTIKRIKRVK 363 (429)
Q Consensus 285 e~~~~ayWt~~APnVedYs~~vAk~IasGsg~likGI~~cae~T~~~IqkG~e~lr~ri~p~ek-seVSP~tlKrLkraK 363 (429)
++.|. +---+|-.--.||++|++-|.+|+.||.||+++|++.|+.+|++|++++|+||+|+++ .+|||.+.+++-.|+
T Consensus 309 ~~~n~-qRaglAsDTvS~Se~Vs~~iisga~~iawglv~gae~tg~~v~~~~~~~r~~~~p~~kp~qVsp~V~~sv~~a~ 387 (560)
T KOG2709|consen 309 EEKNR-QRAGLASDTVSISETVSNFIISGAQKIAWGLVTGAERTGSRVEDNGEQYRTTLIPTDKPMQVSPVVKGSVVYAH 387 (560)
T ss_pred ccccc-ccccccccccchHHHHHHHHhhhhhHhhhhhccchhhhhhHHhcCcHhHhhhcCccCCCcccCccccceEEEee
Confidence 00000 0011222222399999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHhHHHHHHHHHHhhceeeecceecccc----------------ccCcccccccccCchh--hhHHhhhhHHHHHhhhhh
Q 014168 364 KLTKMSEKVATGILSGVVKVSGFFTGPI----------------VNSKVGKKFFSLLPGE--IVLATLDGFSKLFFSVCL 425 (429)
Q Consensus 364 k~TkmtekVSq~LL~GVv~VsG~vt~sl----------------vnSK~GKkffs~lpGe--ValASLDgF~KV~DAvE~ 425 (429)
|.|.++.++.++|.+|||+++.||+.-+ .++|+|+ |++.|. ||+++|+||++||++||+
T Consensus 388 k~Th~aa~~~~~l~~~v~T~~~~VG~~laph~kkqgskl~q~~fg~dke~~---s~~~Gam~iaag~V~GvsTVw~gLE~ 464 (560)
T KOG2709|consen 388 KGTHKAAAKEEILKNIVDTKMDKVGDMLAPHGKKQGSKLAQRRFGDDKESG---SLVSGAMEIAAGGVTGVSTVWMGLED 464 (560)
T ss_pred eccchhhHHHHHHHhhhhHHHHHHHHhhhhhhHHHhhHHHHHhhcCCccCC---CcccceeeeecccccchhHHHhhhhH
Confidence 9999999999999999999999998844 2566666 889995 889999999999999999
Q ss_pred ccCC
Q 014168 426 LSHI 429 (429)
Q Consensus 426 A~k~ 429 (429)
++|+
T Consensus 465 ~ak~ 468 (560)
T KOG2709|consen 465 GAKH 468 (560)
T ss_pred HHHH
Confidence 9984
No 2
>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the, flower opens, and it is believed that senescence proteins produced around that time have a role in this program []. This domain is also found in a number of Spartin proteins which may be implicated in endosomal trafficking, or microtubule dynamics, or both [].
Probab=99.91 E-value=1.8e-26 Score=210.28 Aligned_cols=119 Identities=34% Similarity=0.539 Sum_probs=112.8
Q ss_pred HHHhcccceeeeeeeeccceecccccchhhhhhccCCCCC-CccCHHHHHHHHHHHHHhHHHHHHHHHHhhceeeeccee
Q 014168 309 MIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQ-SEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFF 387 (429)
Q Consensus 309 ~IasGsg~likGI~~cae~T~~~IqkG~e~lr~ri~p~ek-seVSP~tlKrLkraKk~TkmtekVSq~LL~GVv~VsG~v 387 (429)
+|++|+++|+|||+||+|+++++|++|++++++|++|.++ .+|||+|.++|+++|++|+++++|++.+|+||+++++++
T Consensus 1 ~I~~Ga~~is~gI~~~s~~~a~~i~~g~~~~~~~~~p~~~p~~vsp~t~~~~~~~~~~s~~a~~vs~~~l~~v~~~~~~v 80 (179)
T PF06911_consen 1 GIASGAGWISRGIVTGSEYTAKGIQKGGEYLRSKIKPNEKPVEVSPSTKKRVRRAKKVSKKAAKVSSKVLNGVGKVAGNV 80 (179)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ccccccCccc--------ccccccCchhhhHHhhhhHHHHHhhhhhccCC
Q 014168 388 TGPIVNSKVG--------KKFFSLLPGEIVLATLDGFSKLFFSVCLLSHI 429 (429)
Q Consensus 388 t~slvnSK~G--------Kkffs~lpGeValASLDgF~KV~DAvE~A~k~ 429 (429)
++.+.+++.+ ++++...+ |+.+||+||++||||||.|+|.
T Consensus 81 g~~l~~~~~~~~~~~~~~~~~~~~~~--v~~~s~~a~~tV~~gle~a~k~ 128 (179)
T PF06911_consen 81 GSKLAKSVKGKGSDGKDNKKFDGARP--VANASLDAFSTVWDGLEEAGKI 128 (179)
T ss_pred HHHHhhcccCCCCCcccCCccccHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888 77766555 9999999999999999999873
No 3
>PF12634 Inp1: Inheritance of peroxisomes protein 1; InterPro: IPR024758 Inp1 is a peroxisomal membrane protein that binds Pex25p, Pex30p, and Vps1p, all of which are involved in controlling peroxisome division. The levels of Inp1p vary with the cell cycle, and Inp1 acts as a factor that retains peroxisomes in cells and controls peroxisome division []. Inp1p promotes the retention of peroxisomes in mother cells and buds of budding yeast by attaching peroxisomes to as-yet-unidentified cortical structures [].; GO: 0045033 peroxisome inheritance, 0005780 extrinsic to intraperoxisomal membrane
Probab=97.78 E-value=0.00019 Score=65.53 Aligned_cols=85 Identities=22% Similarity=0.392 Sum_probs=66.3
Q ss_pred ccccccccceEEEEEecCCcceEEEEEecCccccccCCCCCeeeccC--eeeEEeccCCCCCCCCcccccCceeeEEEEE
Q 014168 153 QSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDD--SHYFFTLRVPENGSLETDQVHHEVLNYGLTI 230 (429)
Q Consensus 153 ~Sv~la~G~LsIVrl~q~~~~~Avf~rVgD~~qWPL~kD~PVvKld~--~hY~Fsl~~p~~~~~~~~~~~~~~LsYGVtf 230 (429)
-...++.|.|+|+++.-. -++|+++|..|.|||.+..++.++|. +.|+.+++-|. -+|=|.|
T Consensus 56 ~~~~~a~G~leIyqi~~~---~v~fLs~G~~~v~PiLPK~q~~~vd~~~~kFvl~~~nPe-------------rYwrIe~ 119 (145)
T PF12634_consen 56 TERLLAHGPLEIYQIPGS---DVAFLSCGGSIVHPILPKLQCWRVDGESSKFVLPIRNPE-------------RYWRIEF 119 (145)
T ss_pred ceeEEecCCEEEEEecCC---ceeeeecCchheecccccccEEEEcCCCcEEEEEcCCCC-------------cEEEEEe
Confidence 345789999999999877 36799999449999999999999964 44555554333 2668888
Q ss_pred ecC--cchHHHHHHHHHHhhcCcee
Q 014168 231 ATK--GQKHLLKELDKVLETYSCFS 253 (429)
Q Consensus 231 sse--~~e~~l~~LD~lL~q~S~Fs 253 (429)
..+ .....++.|+.+|++...|+
T Consensus 120 ~~~~~e~~~~i~~l~~vl~~i~~y~ 144 (145)
T PF12634_consen 120 LSSTDEDKEVIEELESVLSKICQYE 144 (145)
T ss_pred cCCChhHHHHHHHHHHHHHHHheec
Confidence 763 35677889999999998885
No 4
>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the, flower opens, and it is believed that senescence proteins produced around that time have a role in this program []. This domain is also found in a number of Spartin proteins which may be implicated in endosomal trafficking, or microtubule dynamics, or both [].
Probab=55.99 E-value=4.7 Score=37.19 Aligned_cols=85 Identities=26% Similarity=0.261 Sum_probs=54.5
Q ss_pred cchhHHHHHHHhcccceeeeeeeeccceecccccchhhhhhccCCCCCCccCHHHHHHHHHH-HHHhHHHHHHHHHHhhc
Q 014168 301 DYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRV-KKLTKMSEKVATGILSG 379 (429)
Q Consensus 301 dYs~~vAk~IasGsg~likGI~~cae~T~~~IqkG~e~lr~ri~p~ekseVSP~tlKrLkra-Kk~TkmtekVSq~LL~G 379 (429)
.-++.++++|..|+.++.++|-+++|++-+.++.... |-+-+.---+-++++|++ +++-+++.++..++.+.
T Consensus 4 ~Ga~~is~gI~~~s~~~a~~i~~g~~~~~~~~~p~~~-------p~~vsp~t~~~~~~~~~~s~~a~~vs~~~l~~v~~~ 76 (179)
T PF06911_consen 4 SGAGWISRGIVTGSEYTAKGIQKGGEYLRSKIKPNEK-------PVEVSPSTKKRVRRAKKVSKKAAKVSSKVLNGVGKV 76 (179)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHHHhhCCCCCC-------CCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999877443 222222222334455543 33334555555555555
Q ss_pred eeeecceeccccc
Q 014168 380 VVKVSGFFTGPIV 392 (429)
Q Consensus 380 Vv~VsG~vt~slv 392 (429)
...+...+...+.
T Consensus 77 ~~~vg~~l~~~~~ 89 (179)
T PF06911_consen 77 AGNVGSKLAKSVK 89 (179)
T ss_pred HHHHHHHHhhccc
Confidence 5555555555443
No 5
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=47.44 E-value=8.2 Score=33.06 Aligned_cols=27 Identities=22% Similarity=0.640 Sum_probs=23.5
Q ss_pred EecCccccccCCCCCeeeccCeeeEEecc
Q 014168 179 RVGDEIQWPLAKDEPAVKLDDSHYFFTLR 207 (429)
Q Consensus 179 rVgD~~qWPL~kD~PVvKld~~hY~Fsl~ 207 (429)
..|+ .|||+.|+-.|-|..++++|...
T Consensus 6 ~fG~--~Wpft~eev~l~C~~~~alfv~n 32 (87)
T PF10709_consen 6 EFGD--KWPFTVEEVMLECRPGNALFVIN 32 (87)
T ss_pred HccC--CCCceeeeEEEEEcCCCEEEEEc
Confidence 3566 89999999999999999999754
No 6
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=28.13 E-value=21 Score=40.88 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.2
Q ss_pred ceeEEEeeCCCCCCCCCCcccccccc
Q 014168 17 SITRILLLPPRHHTRSPFSFPVHFPS 42 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (429)
.|+-|||--|-|| .-|||.|||||.
T Consensus 611 Ev~S~LlRnp~hh-slPfSIpVhf~N 635 (936)
T KOG0248|consen 611 EVTSVLTRDVTRT-KFPHSISVKLPN 635 (936)
T ss_pred eehhhhhcCcccc-cCCcceeeeccC
Confidence 4677788778766 579999999996
No 7
>PF06776 IalB: Invasion associated locus B (IalB) protein; InterPro: IPR010642 This family consists of several invasion associated locus B (IalB) proteins and related sequences. IalB is known to be a major virulence factor in Bartonella bacilliformis where it was shown to have a direct role in human erythrocyte parasitism. IalB is up-regulated in response to environmental cues signalling vector-to-host transmission. Such environmental cues would include, but not be limited to, temperature, pH, oxidative stress, and haemin limitation. It is also thought that IalB would aide B. bacilliformis survival under stress-inducing environmental conditions []. The role of this protein in other bacterial species is unknown.; PDB: 3DTD_L.
Probab=27.04 E-value=21 Score=31.24 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=10.4
Q ss_pred HHhhhhHHHHHhhhh
Q 014168 410 LATLDGFSKLFFSVC 424 (429)
Q Consensus 410 lASLDgF~KV~DAvE 424 (429)
--||.||.+.++++|
T Consensus 120 ~~sL~Gf~~A~~~l~ 134 (134)
T PF06776_consen 120 PVSLKGFTAALDALE 134 (134)
T ss_dssp EEE-TTHHHHHHHH-
T ss_pred EEEhhhHHHHHhhcC
Confidence 348888888888876
No 8
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=26.79 E-value=1.3e+02 Score=27.66 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=6.5
Q ss_pred ecCeEEEEecCC
Q 014168 141 IPGAIVHLIERE 152 (429)
Q Consensus 141 IPGaqlhLVd~~ 152 (429)
||||+|-|....
T Consensus 17 v~g~~I~L~A~~ 28 (134)
T PF08400_consen 17 VPGCTITLKARR 28 (134)
T ss_pred CCCCEEEEEEcc
Confidence 456666655444
No 9
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=23.98 E-value=4.6e+02 Score=22.37 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=12.4
Q ss_pred eeEEEEEecCcchHHHHHHHHH
Q 014168 224 LNYGLTIATKGQKHLLKELDKV 245 (429)
Q Consensus 224 LsYGVtfsse~~e~~l~~LD~l 245 (429)
..||+.|+++ ++-+.|..-
T Consensus 81 ~~~GL~F~se---~eA~~F~~~ 99 (104)
T cd00837 81 CVYGLNFASE---EEAAQFRKK 99 (104)
T ss_pred cEEEEeeCCH---HHHHHHHHH
Confidence 6899999874 444444443
No 10
>TIGR02775 TrbG_Ti P-type conjugative transfer protein TrbG. The TrbG protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbG is a homolog of the F-type TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the vir system VirB9 protein .
Probab=18.30 E-value=5.5e+02 Score=24.57 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=52.3
Q ss_pred CeEEEEecCC-ccccccccceEEEEEecCCcceEEEEEecCccccccCCCC-----------------------Ceeecc
Q 014168 143 GAIVHLIERE-QSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDE-----------------------PAVKLD 198 (429)
Q Consensus 143 GaqlhLVd~~-~Sv~la~G~LsIVrl~q~~~~~Avf~rVgD~~qWPL~kD~-----------------------PVvKld 198 (429)
|.++|.-+++ ..+.-++|+.+.+.|.++.... -+-+||...|-+.... =+|..|
T Consensus 1 ~~v~~~y~~~~~~v~~~~g~~T~I~l~~gE~i~--~v~~GD~~~W~v~~~~~g~~~~~~~~i~IKP~~~~~~TNl~V~Tn 78 (206)
T TIGR02775 1 GAVVYPYGAALPSIVCAPLQVCDIALQPGEQLN--NILAGDTVRWKVEPTLSGSGDNARTHVIVKPSDVGLETSLVITTN 78 (206)
T ss_pred CEEEEECCCcEEEEEEeCCcEEEEEeCCCCEEe--eeccCCCCceEEeccccCCCCcceeEEEEEECCCCCceeEEEEeC
Confidence 4556666665 5566788999999998887663 6678888888876420 123346
Q ss_pred CeeeEEeccCCCCCCCCcccccCceeeEEEEEecC
Q 014168 199 DSHYFFTLRVPENGSLETDQVHHEVLNYGLTIATK 233 (429)
Q Consensus 199 ~~hY~Fsl~~p~~~~~~~~~~~~~~LsYGVtfsse 233 (429)
...|.|-|..-. ..-.|-|.|...
T Consensus 79 kR~Y~f~L~s~~-----------~~~~~~V~f~YP 102 (206)
T TIGR02775 79 RRTYHLKLKSRE-----------KKYMPSVGFDYP 102 (206)
T ss_pred CcEEEEEEEEcC-----------CcceEEEEEEcC
Confidence 788999886433 123678888654
Done!