Query 014169
Match_columns 429
No_of_seqs 314 out of 2367
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06204 CYPOR NADPH cytochrome 100.0 1.7E-83 3.7E-88 654.2 47.1 389 26-429 2-416 (416)
2 cd06207 CyPoR_like NADPH cytoc 100.0 1.1E-81 2.3E-86 635.8 44.3 379 34-429 2-382 (382)
3 cd06203 methionine_synthase_re 100.0 4.1E-81 8.8E-86 633.7 45.2 382 34-429 2-398 (398)
4 cd06202 Nitric_oxide_synthase 100.0 2.1E-80 4.5E-85 629.7 46.3 387 33-429 1-402 (406)
5 KOG1158 NADP/FAD dependent oxi 100.0 5E-81 1.1E-85 646.6 37.3 401 21-429 237-645 (645)
6 KOG1159 NADP-dependent flavopr 100.0 7.4E-81 1.6E-85 609.3 34.4 375 32-429 199-574 (574)
7 cd06206 bifunctional_CYPOR The 100.0 5.8E-79 1.2E-83 616.2 45.1 376 33-429 1-384 (384)
8 COG0369 CysJ Sulfite reductase 100.0 1.1E-77 2.3E-82 623.3 41.2 373 21-429 213-587 (587)
9 PRK10953 cysJ sulfite reductas 100.0 7.4E-77 1.6E-81 625.8 46.2 370 21-429 229-600 (600)
10 TIGR01931 cysJ sulfite reducta 100.0 9.5E-76 2.1E-80 620.2 45.8 371 20-429 225-597 (597)
11 cd06199 SiR Cytochrome p450- l 100.0 2.6E-75 5.7E-80 584.2 40.9 356 33-429 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 7.4E-75 1.6E-79 599.1 43.5 370 20-429 159-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 7.4E-51 1.6E-55 380.8 20.7 219 22-246 1-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 3.1E-44 6.8E-49 357.0 29.9 276 20-429 81-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 7.4E-42 1.6E-46 329.2 23.1 245 177-429 15-267 (267)
16 TIGR03224 benzo_boxA benzoyl-C 100.0 6.4E-38 1.4E-42 318.5 32.4 271 22-429 135-411 (411)
17 cd06200 SiR_like1 Cytochrome p 100.0 1.7E-38 3.6E-43 302.5 23.1 212 189-429 30-245 (245)
18 PLN03116 ferredoxin--NADP+ red 100.0 2.5E-38 5.4E-43 310.7 23.1 229 189-429 55-307 (307)
19 cd06208 CYPOR_like_FNR These f 100.0 1.2E-37 2.5E-42 303.3 23.6 228 189-429 39-286 (286)
20 cd06201 SiR_like2 Cytochrome p 100.0 1.6E-35 3.5E-40 288.5 20.9 206 189-429 82-289 (289)
21 cd06188 NADH_quinone_reductase 100.0 5.2E-30 1.1E-34 249.3 13.7 210 177-401 22-273 (283)
22 cd06189 flavin_oxioreductase N 100.0 1.1E-29 2.3E-34 238.7 14.3 195 179-400 13-213 (224)
23 cd00322 FNR_like Ferredoxin re 100.0 1.7E-29 3.6E-34 236.3 14.1 190 189-400 21-214 (223)
24 PRK08051 fre FMN reductase; Va 100.0 1.5E-29 3.3E-34 239.0 12.7 186 189-401 28-219 (232)
25 cd06211 phenol_2-monooxygenase 100.0 2.8E-29 6E-34 238.1 14.2 186 190-401 35-228 (238)
26 PRK07609 CDP-6-deoxy-delta-3,4 100.0 2.2E-29 4.8E-34 251.0 14.0 196 178-400 116-321 (339)
27 PRK10926 ferredoxin-NADP reduc 100.0 1.7E-29 3.6E-34 241.1 11.8 188 190-400 30-229 (248)
28 PRK05464 Na(+)-translocating N 100.0 3.5E-29 7.5E-34 255.3 13.5 209 177-400 146-396 (409)
29 cd06195 FNR1 Ferredoxin-NADP+ 100.0 9E-29 2E-33 234.9 14.9 191 189-402 23-226 (241)
30 cd06210 MMO_FAD_NAD_binding Me 100.0 6.8E-29 1.5E-33 234.9 14.0 186 189-400 33-224 (236)
31 PRK11872 antC anthranilate dio 100.0 7.4E-29 1.6E-33 247.1 14.9 184 189-401 135-325 (340)
32 cd06190 T4MO_e_transfer_like T 100.0 9.7E-29 2.1E-33 233.3 14.7 188 189-400 22-219 (232)
33 PRK08345 cytochrome-c3 hydroge 100.0 8E-29 1.7E-33 241.5 14.4 184 189-401 36-236 (289)
34 cd06187 O2ase_reductase_like T 100.0 1.1E-28 2.5E-33 231.4 14.4 186 189-401 22-214 (224)
35 cd06209 BenDO_FAD_NAD Benzoate 100.0 1.1E-28 2.3E-33 232.4 13.2 182 189-400 29-216 (228)
36 PRK10684 HCP oxidoreductase, N 100.0 9.4E-29 2E-33 245.7 13.2 187 190-401 36-227 (332)
37 TIGR01941 nqrF NADH:ubiquinone 100.0 2.7E-28 5.9E-33 248.5 16.4 209 177-400 142-392 (405)
38 cd06212 monooxygenase_like The 100.0 2.4E-28 5.1E-33 230.7 13.9 186 189-401 28-221 (232)
39 PRK13289 bifunctional nitric o 100.0 2.4E-28 5.2E-33 248.8 13.9 187 189-400 183-381 (399)
40 cd06191 FNR_iron_sulfur_bindin 100.0 2.3E-28 5E-33 230.6 12.6 182 190-400 27-220 (231)
41 PRK05713 hypothetical protein; 100.0 2.8E-28 6E-33 240.3 12.3 179 189-400 117-297 (312)
42 cd06194 FNR_N-term_Iron_sulfur 100.0 1E-27 2.2E-32 224.9 15.4 187 189-401 22-211 (222)
43 cd06213 oxygenase_e_transfer_s 99.9 1.2E-27 2.6E-32 225.2 13.9 181 190-400 27-216 (227)
44 cd06221 sulfite_reductase_like 99.9 1.7E-27 3.8E-32 227.8 14.4 184 189-401 26-214 (253)
45 cd06215 FNR_iron_sulfur_bindin 99.9 3.9E-27 8.4E-32 222.1 13.5 188 189-400 26-220 (231)
46 cd06184 flavohem_like_fad_nad_ 99.9 3.7E-27 8.1E-32 224.6 13.2 182 190-400 36-232 (247)
47 cd06216 FNR_iron_sulfur_bindin 99.9 4.2E-27 9.2E-32 223.7 13.3 185 190-402 45-235 (243)
48 COG1018 Hmp Flavodoxin reducta 99.9 1.6E-26 3.4E-31 221.3 15.4 181 190-402 34-221 (266)
49 PRK08221 anaerobic sulfite red 99.9 1E-26 2.2E-31 223.6 14.0 177 190-400 32-215 (263)
50 cd06196 FNR_like_1 Ferredoxin 99.9 4.3E-27 9.4E-32 219.9 11.1 180 189-401 26-210 (218)
51 cd06217 FNR_iron_sulfur_bindin 99.9 6.4E-27 1.4E-31 221.1 12.1 185 190-400 30-224 (235)
52 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.2E-26 2.5E-31 232.6 14.7 189 190-401 32-231 (352)
53 cd06198 FNR_like_3 NAD(P) bind 99.9 8.4E-27 1.8E-31 217.7 12.8 179 189-401 21-205 (216)
54 PTZ00274 cytochrome b5 reducta 99.9 8.5E-27 1.8E-31 229.6 13.4 186 189-395 80-281 (325)
55 cd06183 cyt_b5_reduct_like Cyt 99.9 2.3E-26 4.9E-31 217.1 13.1 185 189-400 27-225 (234)
56 cd06214 PA_degradation_oxidore 99.9 3E-26 6.5E-31 217.5 13.5 188 190-400 32-229 (241)
57 cd06218 DHOD_e_trans FAD/NAD b 99.9 4.7E-26 1E-30 217.1 14.8 175 189-401 23-204 (246)
58 TIGR02911 sulfite_red_B sulfit 99.9 3.7E-26 8E-31 219.6 13.9 179 190-400 30-213 (261)
59 PTZ00319 NADH-cytochrome B5 re 99.9 3E-26 6.6E-31 224.3 12.7 196 189-400 62-291 (300)
60 cd06185 PDR_like Phthalate dio 99.9 1.3E-25 2.7E-30 208.9 13.0 175 190-401 25-200 (211)
61 COG0543 UbiB 2-polyprenylpheno 99.9 6.3E-25 1.4E-29 209.7 14.9 178 190-400 35-215 (252)
62 cd06197 FNR_like_2 FAD/NAD(P) 99.9 5.7E-25 1.2E-29 206.1 13.1 159 189-398 24-211 (220)
63 PRK06222 ferredoxin-NADP(+) re 99.9 6.5E-25 1.4E-29 213.1 13.4 174 190-400 27-204 (281)
64 cd06220 DHOD_e_trans_like2 FAD 99.9 9.7E-25 2.1E-29 206.3 14.1 166 190-401 23-191 (233)
65 cd06219 DHOD_e_trans_like1 FAD 99.9 9.2E-25 2E-29 208.4 13.6 173 190-399 26-202 (248)
66 cd06192 DHOD_e_trans_like FAD/ 99.9 9.9E-25 2.1E-29 207.5 13.5 173 190-400 24-201 (243)
67 PRK00054 dihydroorotate dehydr 99.9 1.2E-24 2.7E-29 207.8 13.4 169 189-400 30-204 (250)
68 KOG0534 NADH-cytochrome b-5 re 99.9 1.5E-24 3.2E-29 206.7 13.5 185 189-400 80-277 (286)
69 COG4097 Predicted ferric reduc 99.9 1.2E-24 2.5E-29 208.6 10.7 177 192-402 244-426 (438)
70 COG2871 NqrF Na+-transporting 99.9 3.2E-24 6.8E-29 198.7 12.2 187 205-406 210-403 (410)
71 PRK05802 hypothetical protein; 99.9 3.8E-24 8.2E-29 210.8 11.2 170 191-399 95-276 (320)
72 PLN02252 nitrate reductase [NA 99.9 1.1E-23 2.3E-28 230.5 14.3 196 190-400 664-879 (888)
73 PTZ00306 NADH-dependent fumara 99.9 9.5E-23 2.1E-27 231.2 12.7 189 190-401 947-1153(1167)
74 PRK12778 putative bifunctional 99.9 1E-21 2.3E-26 214.8 14.0 174 190-400 27-204 (752)
75 cd06193 siderophore_interactin 99.8 2.4E-21 5.2E-26 183.4 9.6 173 190-399 26-220 (235)
76 cd06186 NOX_Duox_like_FAD_NADP 99.8 8.5E-21 1.8E-25 176.3 11.3 164 189-398 23-197 (210)
77 PRK12779 putative bifunctional 99.8 2.4E-20 5.2E-25 206.6 16.4 184 190-400 676-870 (944)
78 PRK12775 putative trifunctiona 99.8 2.3E-19 4.9E-24 200.4 13.8 173 190-400 27-204 (1006)
79 PF00175 NAD_binding_1: Oxidor 99.8 4.2E-19 9.2E-24 147.3 9.6 104 283-394 1-109 (109)
80 PLN02292 ferric-chelate reduct 99.7 3.6E-16 7.8E-21 166.7 13.6 179 189-385 350-546 (702)
81 PLN02844 oxidoreductase/ferric 99.7 6E-16 1.3E-20 165.5 14.0 185 189-386 337-536 (722)
82 PLN02631 ferric-chelate reduct 99.7 3.5E-16 7.7E-21 166.5 10.6 149 188-353 332-492 (699)
83 KOG3378 Globins and related he 99.6 2.7E-16 5.9E-21 145.2 1.4 181 188-404 178-373 (385)
84 PF08030 NAD_binding_6: Ferric 99.0 1.2E-09 2.6E-14 96.4 7.9 73 280-353 3-79 (156)
85 KOG0039 Ferric reductase, NADH 98.9 6.6E-09 1.4E-13 111.6 12.7 196 190-401 381-633 (646)
86 PRK06567 putative bifunctional 98.9 5.5E-09 1.2E-13 114.5 10.6 97 177-293 803-908 (1028)
87 PF00970 FAD_binding_6: Oxidor 98.7 4.6E-09 1E-13 85.5 2.4 69 189-273 28-99 (99)
88 COG2375 ViuB Siderophore-inter 97.1 0.0088 1.9E-07 57.0 12.9 170 204-416 85-258 (265)
89 PF08022 FAD_binding_8: FAD-bi 96.1 0.00074 1.6E-08 55.6 -1.6 79 178-269 15-102 (105)
90 cd06182 CYPOR_like NADPH cytoc 93.0 0.12 2.7E-06 49.7 4.5 42 34-75 2-44 (267)
91 PF08021 FAD_binding_9: Sidero 91.6 0.16 3.5E-06 42.6 2.9 53 204-271 65-117 (117)
92 cd06208 CYPOR_like_FNR These f 89.3 0.96 2.1E-05 43.9 6.6 51 24-75 3-53 (286)
93 PLN03116 ferredoxin--NADP+ red 88.9 1.1 2.3E-05 44.2 6.6 52 23-75 18-69 (307)
94 cd06201 SiR_like2 Cytochrome p 71.9 9.2 0.0002 37.2 6.1 47 28-75 44-96 (289)
95 PF00970 FAD_binding_6: Oxidor 70.7 15 0.00033 29.0 6.2 39 31-74 1-41 (99)
96 cd06212 monooxygenase_like The 63.1 16 0.00035 33.8 5.7 41 30-75 1-42 (232)
97 cd06196 FNR_like_1 Ferredoxin 55.7 22 0.00049 32.5 5.2 41 30-76 1-41 (218)
98 cd06200 SiR_like1 Cytochrome p 53.5 30 0.00064 32.6 5.7 36 40-75 8-44 (245)
99 cd06217 FNR_iron_sulfur_bindin 53.0 33 0.00072 31.7 5.9 40 31-75 3-43 (235)
100 cd06209 BenDO_FAD_NAD Benzoate 52.9 36 0.00078 31.4 6.1 41 30-75 2-43 (228)
101 cd06211 phenol_2-monooxygenase 51.1 39 0.00085 31.4 6.1 43 28-75 5-48 (238)
102 PRK00054 dihydroorotate dehydr 51.1 41 0.0009 31.7 6.3 42 29-76 4-45 (250)
103 PRK10684 HCP oxidoreductase, N 50.2 41 0.00089 33.2 6.4 47 24-76 4-50 (332)
104 cd06214 PA_degradation_oxidore 50.1 25 0.00054 32.7 4.6 40 30-74 2-44 (241)
105 PRK08051 fre FMN reductase; Va 45.6 50 0.0011 30.6 5.9 40 29-74 2-41 (232)
106 cd06213 oxygenase_e_transfer_s 45.0 51 0.0011 30.4 5.8 39 31-75 2-40 (227)
107 PF04703 FaeA: FaeA-like prote 43.5 60 0.0013 23.9 4.7 26 401-426 22-47 (62)
108 cd06184 flavohem_like_fad_nad_ 43.1 76 0.0016 29.6 6.7 42 30-76 7-50 (247)
109 PF04954 SIP: Siderophore-inte 42.9 98 0.0021 25.6 6.6 95 280-398 3-101 (119)
110 cd06216 FNR_iron_sulfur_bindin 39.0 87 0.0019 29.1 6.4 44 26-74 14-57 (243)
111 PF11132 SplA: Transcriptional 38.5 24 0.00052 26.7 1.9 16 62-77 5-20 (75)
112 cd06189 flavin_oxioreductase N 38.1 59 0.0013 29.9 5.0 38 32-75 1-38 (224)
113 PRK07609 CDP-6-deoxy-delta-3,4 38.0 76 0.0016 31.4 6.1 43 28-75 101-144 (339)
114 PRK06928 pyrroline-5-carboxyla 37.8 57 0.0012 31.4 5.1 42 378-419 168-209 (277)
115 COG3937 Uncharacterized conser 36.4 33 0.00072 28.0 2.6 40 383-423 17-56 (108)
116 PRK05802 hypothetical protein; 35.6 96 0.0021 30.7 6.3 45 25-74 60-106 (320)
117 cd06210 MMO_FAD_NAD_binding Me 35.4 96 0.0021 28.6 6.1 41 30-75 2-47 (236)
118 PRK10926 ferredoxin-NADP reduc 35.4 52 0.0011 31.0 4.3 40 28-74 3-42 (248)
119 PTZ00319 NADH-cytochrome B5 re 35.2 1E+02 0.0022 30.0 6.5 51 20-75 24-76 (300)
120 PF14748 P5CR_dimer: Pyrroline 34.5 55 0.0012 26.7 3.7 37 381-418 12-48 (107)
121 PRK05464 Na(+)-translocating N 33.0 58 0.0013 33.3 4.4 41 30-75 134-175 (409)
122 KOG2536 MAM33, mitochondrial m 31.7 45 0.00097 31.8 3.0 40 119-159 215-254 (263)
123 cd06218 DHOD_e_trans FAD/NAD b 31.5 62 0.0013 30.4 4.1 36 35-75 2-37 (246)
124 PRK08345 cytochrome-c3 hydroge 31.2 1.2E+02 0.0026 29.3 6.1 45 28-75 4-50 (289)
125 cd06215 FNR_iron_sulfur_bindin 30.0 1.1E+02 0.0024 28.0 5.5 37 33-74 2-39 (231)
126 PF12857 TOBE_3: TOBE-like dom 29.5 1.8E+02 0.0038 20.7 5.3 27 48-74 32-58 (58)
127 PRK05713 hypothetical protein; 29.4 91 0.002 30.5 5.0 39 30-74 92-130 (312)
128 PRK11872 antC anthranilate dio 29.0 1.5E+02 0.0032 29.5 6.5 43 28-75 105-149 (340)
129 PRK12491 pyrroline-5-carboxyla 29.0 90 0.002 30.0 4.8 38 381-419 171-208 (272)
130 cd06187 O2ase_reductase_like T 28.8 94 0.002 28.3 4.7 35 35-75 2-36 (224)
131 TIGR01941 nqrF NADH:ubiquinone 28.6 72 0.0016 32.6 4.2 43 28-75 128-171 (405)
132 PF02080 TrkA_C: TrkA-C domain 28.4 82 0.0018 22.9 3.5 30 57-88 42-71 (71)
133 cd06191 FNR_iron_sulfur_bindin 28.2 1.1E+02 0.0025 28.0 5.3 38 33-75 2-40 (231)
134 cd06188 NADH_quinone_reductase 27.5 77 0.0017 30.5 4.0 43 28-75 8-51 (283)
135 PRK12446 undecaprenyldiphospho 27.5 75 0.0016 31.8 4.1 23 280-302 3-27 (352)
136 TIGR00112 proC pyrroline-5-car 26.4 1.1E+02 0.0024 28.8 4.8 37 382-419 152-188 (245)
137 cd06190 T4MO_e_transfer_like T 26.3 91 0.002 28.7 4.2 28 48-76 10-37 (232)
138 cd06183 cyt_b5_reduct_like Cyt 24.8 1.6E+02 0.0034 27.0 5.5 39 33-76 2-42 (234)
139 cd06219 DHOD_e_trans_like1 FAD 24.4 1.4E+02 0.003 28.1 5.1 38 33-75 2-39 (248)
140 PF14474 RTC4: RTC4-like domai 24.4 3.6E+02 0.0078 22.7 7.0 44 376-420 71-116 (124)
141 PTZ00431 pyrroline carboxylate 24.3 1.2E+02 0.0026 28.8 4.7 38 381-419 164-201 (260)
142 cd06195 FNR1 Ferredoxin-NADP+ 24.0 1.1E+02 0.0023 28.5 4.2 36 34-75 2-37 (241)
143 PF13580 SIS_2: SIS domain; PD 23.7 1.7E+02 0.0036 24.8 5.0 37 362-399 21-57 (138)
144 TIGR02160 PA_CoA_Oxy5 phenylac 23.5 1.3E+02 0.0028 29.9 4.9 39 31-74 3-44 (352)
145 KOG4723 Uncharacterized conser 23.2 1.2E+02 0.0027 27.9 4.2 116 309-429 17-139 (248)
146 KOG0098 GTPase Rab2, small G p 23.0 1.9E+02 0.0041 26.5 5.2 32 374-417 109-140 (216)
147 PRK06222 ferredoxin-NADP(+) re 22.9 1.5E+02 0.0033 28.5 5.2 39 32-75 2-40 (281)
148 PRK14841 undecaprenyl pyrophos 22.8 3.6E+02 0.0079 25.4 7.4 25 376-400 90-114 (233)
149 cd00322 FNR_like Ferredoxin re 22.7 90 0.002 28.2 3.4 29 47-76 8-36 (223)
150 PF09012 FeoC: FeoC like trans 22.6 1.8E+02 0.0038 21.4 4.4 27 400-426 20-46 (69)
151 COG0345 ProC Pyrroline-5-carbo 22.1 1.2E+02 0.0027 29.1 4.2 38 381-419 168-205 (266)
152 COG4123 Predicted O-methyltran 21.3 4.1E+02 0.0089 25.3 7.5 19 278-296 45-63 (248)
153 PF02330 MAM33: Mitochondrial 21.3 56 0.0012 29.9 1.7 41 118-159 157-197 (204)
154 KOG1412 Aspartate aminotransfe 21.3 3.1E+02 0.0066 27.3 6.6 51 293-348 165-216 (410)
155 PF06753 Bradykinin: Bradykini 20.9 30 0.00065 18.6 -0.1 10 288-297 6-15 (19)
No 1
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.7e-83 Score=654.19 Aligned_cols=389 Identities=51% Similarity=0.904 Sum_probs=359.3
Q ss_pred CCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCC-CCcEEEEeeCCCCC
Q 014169 26 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS-LELLFSLHTDNEDG 104 (429)
Q Consensus 26 ~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~-~~~~~~~~~~~~~~ 104 (429)
+++||.|+|++|++||++ ++|+++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++ +++++.+.......
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~ 80 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPA 80 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCccc
Confidence 578999999999999998 9999999999998878999999999999999999999999999999 89988887544211
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHH
Q 014169 105 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 184 (429)
Q Consensus 105 ~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~dvl~ 184 (429)
+...|+|.++|++++|++|+||+++|++.+|+.||.||+|+++|++|.+|+| +|.++|.+|+.+++++++|||.
T Consensus 81 -----~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 81 -----SKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred -----ccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 2346799999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hCCCCC---CChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcC----------
Q 014169 185 EFPSAT---PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI---------- 251 (429)
Q Consensus 185 ~f~~~~---~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~---------- 251 (429)
+||+++ +|++.|++++ |+++||+|||||+|..+++.++|||+++.+.++.++.+.|+||+||+++.
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999999 99999999999999877899999999999999988999999999999976
Q ss_pred -----------CCCCCCCccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecc
Q 014169 252 -----------PLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCR 320 (429)
Q Consensus 252 -----------~G~~~~~~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R 320 (429)
+|+ .|.+.++.|.|.+|.+..+|+||||+|||||||+||++++....+.+...++++||||||
T Consensus 234 ~~~~~~~~~~~~g~------~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R 307 (416)
T cd06204 234 PYYLSGPRKKGGGS------KVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCR 307 (416)
T ss_pred ccccccccccCCCC------eEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCC
Confidence 677 999999999999998777999999999999999999999876432232457999999999
Q ss_pred cCCcccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCch-hHHHHHHHHHHH
Q 014169 321 NRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTI 399 (429)
Q Consensus 321 ~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~-M~~~v~~~L~~i 399 (429)
+++.|++|++||++|++.+.+++++++|||++..++|||+++.+..+.+++++.+++.||+||| +. |+++|.++|.++
T Consensus 308 ~~~~d~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp-~~~M~~~V~~~L~~i 386 (416)
T cd06204 308 HPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGD-AKNMARDVEKTLLEI 386 (416)
T ss_pred CCCcccchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECC-cccchHHHHHHHHHH
Confidence 9944999999999999988888999999998877899999999888888887777799999999 55 999999999999
Q ss_pred HHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 014169 400 VQEQENVDSSKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 429 (429)
+++++++++++|++|+++|+++|||++|||
T Consensus 387 ~~~~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 387 LAEQGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999999999
No 2
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=1.1e-81 Score=635.80 Aligned_cols=379 Identities=40% Similarity=0.747 Sum_probs=350.8
Q ss_pred EEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCCC
Q 014169 34 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 113 (429)
Q Consensus 34 v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (429)
|++|++||+.+++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.++++..... +...
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~------~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQ------RGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccccc------ccCC
Confidence 6789999999999999999999987789999999999999999999999999999999999888754311 2346
Q ss_pred CCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCCh
Q 014169 114 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPI 193 (429)
Q Consensus 114 ~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~dvl~~f~~~~~~~ 193 (429)
|+|.|+|++++|++||||+++|++.+|+.||.||+|+++|++|.+|++.+|.+.|.+| ++++++|+|.+||++++++
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 8899999999999999999999999999999999999999999999999999999998 6899999999999999999
Q ss_pred HHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCccC
Q 014169 194 GVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL 273 (429)
Q Consensus 194 gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~l 273 (429)
+.+++++ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||+++++|+ .|.+.+|.|.|.+
T Consensus 153 ~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~~p~g~F~l 225 (382)
T cd06207 153 EQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQ------RVTVFIKKSSFKL 225 (382)
T ss_pred HHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCC------EEEEEEECCcccC
Confidence 9999999 99999999999999866789999999999998888889999999999999998 9999999999999
Q ss_pred CCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCC
Q 014169 274 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 353 (429)
Q Consensus 274 p~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~ 353 (429)
|.+..+|+||||+|||||||+||++++....+.+...++++||||||+++.|++|++||++|++.+.+++++++|||++.
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP 305 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 97778899999999999999999999876433333568999999999994499999999999999999899999999988
Q ss_pred CccchhhhHHHhHHHHHHhhcCC-cEEEEeCCCch-hHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 014169 354 QKEYVQHKMMDKAAQLWSLLSKE-GYLYVCGDAKG-MARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 354 ~k~yvq~~l~~~~~~l~~~l~~~-~~vyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 429 (429)
.++|||+++.++.+.+++++.++ +.|||||| +. |+++|.++|.+++++++++++++|++++++|+++|||++|||
T Consensus 306 ~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~-~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 306 KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGS-TWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CceEhHHHHHHCHHHHHHHHhcCCCEEEEECC-cccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 89999999998888888877655 49999999 66 999999999999999999999999999999999999999999
No 3
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=4.1e-81 Score=633.74 Aligned_cols=382 Identities=38% Similarity=0.689 Sum_probs=345.7
Q ss_pred EEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCcEEEEeeCCCCCCCCCCCC
Q 014169 34 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRGSSL 111 (429)
Q Consensus 34 v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~ 111 (429)
|++|++||+++++|+++||+||+++.+++|+|||+|+|+|+|+++.|+++|++||++ ++..+.++........ ....
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKK-NAKV 80 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccc-cccc
Confidence 678999999999999999999998778999999999999999999999999999999 7888888753221111 1135
Q ss_pred CCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCC
Q 014169 112 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 191 (429)
Q Consensus 112 ~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~dvl~~f~~~~~ 191 (429)
+.++|.++|++++|++||||+++|+++||+.||.||+|+.+|++|.+|++.+|+++|.+|+.+.++|++|||++||++++
T Consensus 81 ~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 81 PVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcC-----CCCCCCCccEEEEEE
Q 014169 192 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI-----PLEGNGDCSWAPIFI 266 (429)
Q Consensus 192 ~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~-----~G~~~~~~~~v~v~~ 266 (429)
|++.+++++ |+++||+|||||+|..+++.++|+|+++.+++ .|+||+||++++ +|+ .|.+.+
T Consensus 161 pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G~------~v~i~~ 227 (398)
T cd06203 161 PLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHGV------KVPFYL 227 (398)
T ss_pred CHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCCC------EEEEEE
Confidence 999999999 99999999999999876789999999987644 599999999987 998 999999
Q ss_pred e-CCCccCCCC-CCCCEEEEccCcccchhHHHHHHHHHHhh--cCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCcc
Q 014169 267 R-PSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQ--DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 342 (429)
Q Consensus 267 p-~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~--~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~ 342 (429)
+ .|.|.+|.+ ..+|+||||+|||||||+||++++....+ .+...++++||||||+++.|++|++||++|++.+.++
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~ 307 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILT 307 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCc
Confidence 5 568999876 67899999999999999999999876432 1224689999999999944999999999999999999
Q ss_pred EEEEEEecCCC---CccchhhhHHHhHHHHHHhh-cCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 014169 343 ELILAFSREGS---QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 418 (429)
Q Consensus 343 ~l~~a~Sr~~~---~k~yvq~~l~~~~~~l~~~l-~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 418 (429)
+++++|||++. .++|||+.+.++.+.+++++ ..++.||||||++.|+++|+++|.+++++++|+++++|++|+++|
T Consensus 308 ~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l 387 (398)
T cd06203 308 RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARL 387 (398)
T ss_pred eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999877 48999999999988888876 467999999996789999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 014169 419 QMEGRYLRDVW 429 (429)
Q Consensus 419 ~~~~Ry~~dvw 429 (429)
+++|||++|||
T Consensus 388 ~~~gRy~~dvw 398 (398)
T cd06203 388 RKEDRYLEDVW 398 (398)
T ss_pred HHcCCeeeecC
Confidence 99999999999
No 4
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=2.1e-80 Score=629.72 Aligned_cols=387 Identities=41% Similarity=0.719 Sum_probs=344.4
Q ss_pred EEEeeeeecCCCCCCcEEEEEEEeCC-CCcccCCCCeEEEeccCCHHHHHHHHHHhCCC--CCcEEEEeeCCCCCCCCC-
Q 014169 33 NVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRG- 108 (429)
Q Consensus 33 ~v~~~~~Lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~--~~~~~~~~~~~~~~~~~~- 108 (429)
+|++|++||++++.|+|+||+||+++ ++++|+|||+|+|+|+|+++.|+++|++|++. .+..+.++.........+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 47889999999999999999999986 58999999999999999999999999999985 467777765433221100
Q ss_pred --CCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHHhC
Q 014169 109 --SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEF 186 (429)
Q Consensus 109 --~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~dvl~~f 186 (429)
.....+++.++|++++|++||||+++|++.+|+.||.||+|+.+|++|.+|++ |+++|.+|+.+++++++|||.+|
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f 158 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEF 158 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhC
Confidence 01223556699999999999999999999999999999999999999999976 88899999999999999999999
Q ss_pred CCCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCC--CCcccCcccHHhhhcCCCCCCCCccEEEE
Q 014169 187 PSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPI 264 (429)
Q Consensus 187 ~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~--g~~~~G~~S~~L~~l~~G~~~~~~~~v~v 264 (429)
|++++|+++|++++ |+++||+|||||+|..+++.++|+|+++.+.++. |+.+.|+||+||+++++|+ .|.+
T Consensus 159 ~s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v 231 (406)
T cd06202 159 PSLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGD------TVPC 231 (406)
T ss_pred CcCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCC------EEEE
Confidence 99999999999999 9999999999999987788999999999887654 4467899999999999998 9999
Q ss_pred EEeCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhh----cCCCCCCeEEEEecccCCcccccHHHHHHHHHcC
Q 014169 265 FIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG 339 (429)
Q Consensus 265 ~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~----~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~ 339 (429)
.++.+ .|.+|.+..+|+||||+|||||||+|||+++....+ .+...++++||||||+++.|++|++||++|.+.+
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~ 311 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG 311 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcC
Confidence 98754 899998778999999999999999999999865321 1224689999999999944999999999999999
Q ss_pred CccEEEEEEecCCC-CccchhhhHHHhHHHHHHhh-cCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 014169 340 VISELILAFSREGS-QKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 417 (429)
Q Consensus 340 ~~~~l~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~l-~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 417 (429)
.+++++++|||++. .++|||+.|.++.+.+++++ ..++.|||||| +.|+++|.++|.++++++++++.++|++|+++
T Consensus 312 ~~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~-~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~ 390 (406)
T cd06202 312 VLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGD-VTMAEDVSQTIQRILAEHGNMSAEEAEEFILK 390 (406)
T ss_pred CCceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCC-CchHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999865 58999999999999999977 57899999999 68999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 014169 418 FQMEGRYLRDVW 429 (429)
Q Consensus 418 l~~~~Ry~~dvw 429 (429)
|+++|||++|||
T Consensus 391 l~~~gRy~~dvw 402 (406)
T cd06202 391 LRDENRYHEDIF 402 (406)
T ss_pred HHHcCCeEEEec
Confidence 999999999999
No 5
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=5e-81 Score=646.59 Aligned_cols=401 Identities=47% Similarity=0.832 Sum_probs=367.9
Q ss_pred CCCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeC
Q 014169 21 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 100 (429)
Q Consensus 21 ~~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~ 100 (429)
..|+++.+||.+.++.+..|..+.+.+.++|++++..+++++|+||||++|+|+|+.+.|+++|++|+++++..+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~ 316 (645)
T KOG1158|consen 237 STPFDKVFPFPALVVVNLALSTPSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLE 316 (645)
T ss_pred CCcchhcccchhhhhHHhhccCCCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEe
Confidence 36788999999999999999988888999999999998899999999999999999999999999999997655544433
Q ss_pred CCCC-CCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCH
Q 014169 101 NEDG-TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 179 (429)
Q Consensus 101 ~~~~-~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~ 179 (429)
.... ++.....+.|++.++|++++|++|+||+++|++.+++.||.||+|+.||++|+.|+|.+|..+|.+|+....+++
T Consensus 317 ~~~~~~~~~~~~~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl 396 (645)
T KOG1158|consen 317 LETDTNPTPAKKPHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTL 396 (645)
T ss_pred ecCCCCCCccccCCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccH
Confidence 2221 233335678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCC
Q 014169 180 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGD 258 (429)
Q Consensus 180 ~dvl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~G~~~~~ 258 (429)
+|||.+||+|++|+..+++++ |.++||+|||||||..+++++++++.++.|.+++| ..+.|+||+||.++++|+
T Consensus 397 ~dVl~~fps~kpP~~~ll~~l-p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~---- 471 (645)
T KOG1158|consen 397 LDVLEAFPSCKPPLPHLLELL-PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGE---- 471 (645)
T ss_pred HHHHhhCCCCCCCHHHHHHhC-ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCcc----
Confidence 999999999999999999999 99999999999999999999999999999999886 678899999999999998
Q ss_pred ccEEE--EEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCC--CCCCeEEEEecccCCcccccHHHHHH
Q 014169 259 CSWAP--IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA--QLGPALLFFGCRNRRMDFIYEDELNN 334 (429)
Q Consensus 259 ~~~v~--v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~--~~~~~~L~~G~R~~~~d~ly~~eL~~ 334 (429)
.+. +......|++|.++.+|+||||+||||||||||+|++..+++.+. ..+ +|||||||+.+.|++|++||++
T Consensus 472 --~~~~~~~~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~ 548 (645)
T KOG1158|consen 472 --KVPNPVPVGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEE 548 (645)
T ss_pred --ccCcceeecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHH
Confidence 565 555566999999999999999999999999999999999876542 234 8999999999989999999999
Q ss_pred HHHcCCccEEEEEEecCC-CCccchhhhHHHhHHHHHHhh-cCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHH
Q 014169 335 FEEEGVISELILAFSREG-SQKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAE 412 (429)
Q Consensus 335 ~~~~~~~~~l~~a~Sr~~-~~k~yvq~~l~~~~~~l~~~l-~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~ 412 (429)
+.+.+.++++.+||||++ +.+.||||++++++++||++| .++++|||||++.+|+++|.++|.+++++.++++.++|.
T Consensus 549 ~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~ 628 (645)
T KOG1158|consen 549 YKKAGILTRLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAE 628 (645)
T ss_pred HHhcCcchhheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHH
Confidence 999999999999999998 789999999999999999988 569999999997669999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEeeC
Q 014169 413 SIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 413 ~~~~~l~~~~Ry~~dvw 429 (429)
.++++|++++||++|||
T Consensus 629 ~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 629 KYLKQLKKSKRYIEDVW 645 (645)
T ss_pred HHHHHhhhccccccccC
Confidence 99999999999999999
No 6
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=7.4e-81 Score=609.29 Aligned_cols=375 Identities=34% Similarity=0.586 Sum_probs=347.0
Q ss_pred EEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCC
Q 014169 32 VNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSL 111 (429)
Q Consensus 32 ~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (429)
++++.|++||+.+|+|+|||++|++.++...|+|||++.|+|.|+++.|+++++.+|+++++...+........ ..
T Consensus 199 ~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~----~~ 274 (574)
T KOG1159|consen 199 AKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS----SP 274 (574)
T ss_pred cchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc----cc
Confidence 89999999999999999999999999989999999999999999999999999999999987665554433211 11
Q ss_pred CCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCC
Q 014169 112 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 191 (429)
Q Consensus 112 ~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~dvl~~f~~~~~ 191 (429)
..-+|.|+|+++++++|+||+++|+++||..|+.|++|+.||++|++++|++|.++|++|+.+++||++|+|++|+++++
T Consensus 275 ~~~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~l 354 (574)
T KOG1159|consen 275 LPLLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKL 354 (574)
T ss_pred ccccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccC
Confidence 12588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCc
Q 014169 192 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 271 (429)
Q Consensus 192 ~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F 271 (429)
|++++++++ |.++||+|||||+|..+ .++|+|++|+|+|...+.|.|+||+||++|++|+ .+.+....|.+
T Consensus 355 p~~yl~d~~-P~IrPR~fSIas~~~~~--~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~------~i~~~v~~g~l 425 (574)
T KOG1159|consen 355 PIDYLLDLL-PVIRPRAFSIASSPGAH--HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGD------EIPIKVRPGTL 425 (574)
T ss_pred CHHHHHHhc-cccccceeeeccCCCCC--ceeEEEEEEEEeeeccccccchhHHHHhhcCCCC------eEEEEEecCcc
Confidence 999999999 99999999999999864 4999999999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecC
Q 014169 272 KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSRE 351 (429)
Q Consensus 272 ~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~ 351 (429)
.+|.+.+.|+||||+|||||||||+++++..+ ...+..||||||+.++||+|.+||.++.+.+ ++.|||||
T Consensus 426 ~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q-----~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~----~~~AFSRD 496 (574)
T KOG1159|consen 426 YFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ-----GDKENVLFFGCRNKDKDFLYEDEWTELNKRA----FHTAFSRD 496 (574)
T ss_pred ccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh-----ccCCceEEEecccCCccccccchhhhhhcch----hhhhcccc
Confidence 99988899999999999999999999999873 2345699999999999999999999887654 45599999
Q ss_pred CCCccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 014169 352 GSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 352 ~~~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 429 (429)
++.|.||||.+++..+.+|+++. .++.|||||++..|.++|.++|.+|..+.+|.+.|.|. |++.|++.+||+.|+|
T Consensus 497 qe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 497 QEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred cccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 99999999999999999999885 89999999998899999999999999999999666666 9999999999999999
No 7
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=5.8e-79 Score=616.24 Aligned_cols=376 Identities=35% Similarity=0.614 Sum_probs=339.6
Q ss_pred EEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCC
Q 014169 33 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 112 (429)
Q Consensus 33 ~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (429)
+|+.|++||+++++|+|+||+|++++ +++|+|||+|+|+|+|+++.|+++|++||+++++.++++.... ...
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~-------~~~ 72 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS-------ATG 72 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC-------CCC
Confidence 58899999999999999999999976 7999999999999999999999999999999999988875332 234
Q ss_pred CCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCC
Q 014169 113 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 192 (429)
Q Consensus 113 ~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~dvl~~f~~~~~~ 192 (429)
.|++.|+|++++|++|+||+++|+++||+.||.||+|+++|++|..++ +++|.+++..+++|++|+|.+||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 578889999999999999999999999999999999999999999884 4679999999999999999999999999
Q ss_pred hHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCCCCccEEEEE--EeCC
Q 014169 193 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIF--IRPS 269 (429)
Q Consensus 193 ~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~G~~~~~~~~v~v~--~p~g 269 (429)
+|||++++ |+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||+++++|+ .|.+. +|.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGD------SIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCC------eEEEEEecCCC
Confidence 99999999 99999999999999766789999999998876655 567899999999999998 88865 5778
Q ss_pred CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEe
Q 014169 270 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 349 (429)
Q Consensus 270 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~S 349 (429)
.|.++.+..+|+||||+|||||||+||++++......+...++++||||||+.+.|++|++||++|++.+. +++++++|
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~-~~l~~a~S 300 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGV-VSVRRAYS 300 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCC-eEEEEEec
Confidence 99998777789999999999999999999987643333345789999999999449999999999998654 48999999
Q ss_pred cCCCC-ccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHCCCe
Q 014169 350 REGSQ-KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQE----NVDSSKAESIVKKFQMEGRY 424 (429)
Q Consensus 350 r~~~~-k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~~Ry 424 (429)
|++.. ++|||+.+.+..+.+++++.+++.|||||| +.|+++|.++|.+++.+++ +++.++|++++++|+++|||
T Consensus 301 r~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry 379 (384)
T cd06206 301 RPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGD-GRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRY 379 (384)
T ss_pred ccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECC-CchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCe
Confidence 98764 899999998888888887777899999999 6799999999999999999 99999999999999999999
Q ss_pred EEeeC
Q 014169 425 LRDVW 429 (429)
Q Consensus 425 ~~dvw 429 (429)
++|||
T Consensus 380 ~~dvw 384 (384)
T cd06206 380 ATDVF 384 (384)
T ss_pred eeecC
Confidence 99999
No 8
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-77 Score=623.29 Aligned_cols=373 Identities=39% Similarity=0.690 Sum_probs=351.1
Q ss_pred CCCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeC
Q 014169 21 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 100 (429)
Q Consensus 21 ~~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~ 100 (429)
.+++.+..++.+.+..|++|+..+++|+++||+|++++++++|+|||+++|||.|+++.|+++|+.||++++..|.+.
T Consensus 213 ~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-- 290 (587)
T COG0369 213 ESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-- 290 (587)
T ss_pred cccccccCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC--
Confidence 567889999999999999999999999999999999999999999999999999999999999999999998666221
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHH
Q 014169 101 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 180 (429)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~ 180 (429)
+.++++.++|++|+|++..| |.|+..|+.|+.+++.++.|..++ ..+++.|.. +++++
T Consensus 291 ---------------~~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~ 348 (587)
T COG0369 291 ---------------GETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLI 348 (587)
T ss_pred ---------------CCcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHH
Confidence 35889999999999999988 999999999999999999999885 667777777 79999
Q ss_pred HHHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCC-CCCCCCc
Q 014169 181 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDC 259 (429)
Q Consensus 181 dvl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~-G~~~~~~ 259 (429)
|+|.+||+++++++++++++ |+++||.|||||+|..++++++|||.+|+|.++ ++.+.|.||+||+++.. |+
T Consensus 349 d~L~~f~~~~l~~~~li~~l-~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~----- 421 (587)
T COG0369 349 DVLRDFPPAKLPAEELIDLL-PPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGD----- 421 (587)
T ss_pred HHHhhccccCCCHHHHHHhC-ccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCC-----
Confidence 99999999999999999999 999999999999999999999999999999987 56899999999999776 87
Q ss_pred cEEEEEEeCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHc
Q 014169 260 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 338 (429)
Q Consensus 260 ~~v~v~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~ 338 (429)
.+.++++.+ +|++|.++.+||||||+||||||||+|+|++... + ..+++|||||||+.+.||+|++||++|.+.
T Consensus 422 -~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~---~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~ 496 (587)
T COG0369 422 -TIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAAN---G-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKD 496 (587)
T ss_pred -eEEEEeccCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhc---c-ccCceEEEecCCCCccchhhHHHHHHHHhc
Confidence 999999999 9999999889999999999999999999999874 2 456899999999977799999999999999
Q ss_pred CCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 014169 339 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 418 (429)
Q Consensus 339 ~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 418 (429)
|.++++..|||||+.+|.||||+|++++++||+++++++.|||||++..|+++|.++|.+++.+.++++.|+|.+++++|
T Consensus 497 G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~l 576 (587)
T COG0369 497 GVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKEL 576 (587)
T ss_pred CCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999966999999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 014169 419 QMEGRYLRDVW 429 (429)
Q Consensus 419 ~~~~Ry~~dvw 429 (429)
++++||++|||
T Consensus 577 k~~~RY~~DVy 587 (587)
T COG0369 577 KKEGRYQRDVY 587 (587)
T ss_pred HhcCceeeecC
Confidence 99999999999
No 9
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=7.4e-77 Score=625.79 Aligned_cols=370 Identities=30% Similarity=0.528 Sum_probs=338.8
Q ss_pred CCCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeC
Q 014169 21 NASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTD 100 (429)
Q Consensus 21 ~~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~ 100 (429)
..+|++.+||.|+|+.|++||..+++|+|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|.+.
T Consensus 229 ~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~-- 306 (600)
T PRK10953 229 TSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVD-- 306 (600)
T ss_pred cCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeC--
Confidence 358999999999999999999999999999999999888999999999999999999999999999999999887653
Q ss_pred CCCCCCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHH
Q 014169 101 NEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLL 180 (429)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~ 180 (429)
..++|++++|++|+||+. |++.+|+.++.++.++. |.++. ++++.+.+|.. +++++
T Consensus 307 ---------------~~~~tl~~~l~~~~dl~~-~~~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~ 362 (600)
T PRK10953 307 ---------------GKTLPLAEALQWHFELTV-NTANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIV 362 (600)
T ss_pred ---------------CCCCCHHHHHHHhcccCC-CcHHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHH
Confidence 126799999999999997 58899999999998864 33442 35667778875 58999
Q ss_pred HHHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCc
Q 014169 181 EVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDC 259 (429)
Q Consensus 181 dvl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~ 259 (429)
|||++|| +++++|||++++ |+++||+|||||+|...+++++|+|++++|.. .|+.+.|.||+||.+ +++|+
T Consensus 363 dvL~~f~-~~~~~~q~l~ll-~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~Gd----- 434 (600)
T PRK10953 363 DMVRFAP-AQLDAEQLIGLL-RPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEEG----- 434 (600)
T ss_pred HHHHhCC-CCCCHHHHHHhC-CCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCCC-----
Confidence 9999997 789999999999 88999999999999877889999999998875 678899999999997 99998
Q ss_pred cEEEEEEeCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHc
Q 014169 260 SWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 338 (429)
Q Consensus 260 ~~v~v~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~ 338 (429)
.|.++++.| .|++|.++.+|+||||+|||||||+||++++... + ..+++|||||||+...|++|++||++|.+.
T Consensus 435 -~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~---~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~ 509 (600)
T PRK10953 435 -EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD---G-APGKNWLFFGNPHFTEDFLYQVEWQRYVKE 509 (600)
T ss_pred -EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHc---C-CCCCeEEEeeccCCccchhHHHHHHHHHHc
Confidence 999999876 8999988889999999999999999999998763 2 457999999999966699999999999999
Q ss_pred CCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 014169 339 GVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 418 (429)
Q Consensus 339 ~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 418 (429)
+.+++++++|||++.+|+||||+|.++.+++|+++.++++|||||++..|+++|.++|.+|+.++++++.++|++|+++|
T Consensus 510 g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l 589 (600)
T PRK10953 510 GLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSEL 589 (600)
T ss_pred CCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999889999999999999999999889999999997689999999999999999999999999999999
Q ss_pred HHCCCeEEeeC
Q 014169 419 QMEGRYLRDVW 429 (429)
Q Consensus 419 ~~~~Ry~~dvw 429 (429)
+++|||++|||
T Consensus 590 ~~~~RY~~Dvy 600 (600)
T PRK10953 590 RVERRYQRDVY 600 (600)
T ss_pred HHcCCeeeecC
Confidence 99999999999
No 10
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=9.5e-76 Score=620.23 Aligned_cols=371 Identities=33% Similarity=0.597 Sum_probs=338.6
Q ss_pred CCCCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEee
Q 014169 20 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHT 99 (429)
Q Consensus 20 ~~~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~ 99 (429)
...+|++++||.|+|++|++||..+++|+|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.+++.
T Consensus 225 ~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~- 303 (597)
T TIGR01931 225 ATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG- 303 (597)
T ss_pred ccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-
Confidence 3467899999999999999999999999999999999988999999999999999999999999999999999887653
Q ss_pred CCCCCCCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCH
Q 014169 100 DNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 179 (429)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~ 179 (429)
+.++|++++|++|+||+. +++.||+.||.+|+|+..++.| ++++.+.+|+. ++++
T Consensus 304 ----------------~~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~~~------~~~~~~~~y~~--~~~~ 358 (597)
T TIGR01931 304 ----------------GKTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKALI------ADNEKLKAYIQ--NTPL 358 (597)
T ss_pred ----------------CCCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHHHh------cCHHHHHHHHc--CCCH
Confidence 136899999999999998 6899999999999998665433 26777888886 6899
Q ss_pred HHHHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCC
Q 014169 180 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGD 258 (429)
Q Consensus 180 ~dvl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~ 258 (429)
+|||.+|| +++++|||++++ |++.||+|||||+|...++.++|+|++++|.. .|+.+.|.||+||++ +++|+
T Consensus 359 ~dvl~~fp-~~~~~gq~v~ll-~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~Gd---- 431 (597)
T TIGR01931 359 IDLIRDYP-ADLDAEQLISLL-RPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEGD---- 431 (597)
T ss_pred HHHHHHCC-CCCCHHHHHHhC-cccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCCC----
Confidence 99999999 899999999999 88999999999999876789999999998874 678899999999998 99998
Q ss_pred ccEEEEEEeCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHH
Q 014169 259 CSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 337 (429)
Q Consensus 259 ~~~v~v~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~ 337 (429)
.|.+.++.| .|++|.+..+|+||||+|||||||+||++++... + ..++++||||||+...|++|++||++|.+
T Consensus 432 --~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~---~-~~g~~~LffG~R~~~~D~ly~~El~~~~~ 505 (597)
T TIGR01931 432 --TVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAED---G-AKGKNWLFFGNPHFTTDFLYQVEWQNYLK 505 (597)
T ss_pred --EEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHc---c-CCCCEEEEECCCCCCcchhHHHHHHHHHH
Confidence 999998765 8999988789999999999999999999998763 2 45799999999995449999999999999
Q ss_pred cCCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 014169 338 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 417 (429)
Q Consensus 338 ~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 417 (429)
.+.+++++++|||++..++|||++|.++.+.+++++.++++|||||+++.|+++|.++|.++++++++++.++|++|+++
T Consensus 506 ~~~l~~l~~afSRd~~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~ 585 (597)
T TIGR01931 506 KGVLTKMDLAFSRDQAEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTD 585 (597)
T ss_pred cCCCceeEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99998999999998778999999999998899998877899999994389999999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 014169 418 FQMEGRYLRDVW 429 (429)
Q Consensus 418 l~~~~Ry~~dvw 429 (429)
|+++|||++|||
T Consensus 586 l~~~~RY~~DVy 597 (597)
T TIGR01931 586 LRVEKRYQRDVY 597 (597)
T ss_pred HHHcCCeeeecC
Confidence 999999999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=2.6e-75 Score=584.23 Aligned_cols=356 Identities=40% Similarity=0.647 Sum_probs=321.5
Q ss_pred EEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCCCCCCCCCCCCC
Q 014169 33 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 112 (429)
Q Consensus 33 ~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (429)
+|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|+++|++||++++..+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 47899999999999999999999998889999999999999999999999999999999876531
Q ss_pred CCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHHHHHhCC--CCC
Q 014169 113 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SAT 190 (429)
Q Consensus 113 ~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~dvl~~f~--~~~ 190 (429)
+++.++|++++|++|+||+++ .++.|+.||+++.++++|.. +|+++|.+ .++++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 345689999999999999986 55568899999988888775 67877764 479999999999 999
Q ss_pred CChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhc-CCCCCCCCccEEEEEEeCC
Q 014169 191 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 269 (429)
Q Consensus 191 ~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l-~~G~~~~~~~~v~v~~p~g 269 (429)
+++|||++++ |+++||+|||||+|..+++.++|+|+++++.++ ++.+.|.||+||+++ ++|+ .|.++++.|
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~Gd------~v~v~~~~~ 203 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEGD------TVPVFVQPN 203 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCCC------EEEEEEecC
Confidence 9999999999 889999999999998767899999999988763 566789999999985 6998 999998765
Q ss_pred -CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEE
Q 014169 270 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 348 (429)
Q Consensus 270 -~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~ 348 (429)
.|++|.+..+|+||||+|||||||+||++++... + ..++++||||||++..|++|++||+++++.+.+++++++|
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---G-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 8999987788999999999999999999998762 2 4588999999999844999999999999999888999999
Q ss_pred ecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEEee
Q 014169 349 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLRDV 428 (429)
Q Consensus 349 Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 428 (429)
||++..++|||+++.++.+.+++++..++.||||||+..|+++|+++|.++++++++++.++|++++++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999998888888877789999999943899999999999999999999999999999999999999999
Q ss_pred C
Q 014169 429 W 429 (429)
Q Consensus 429 w 429 (429)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=7.4e-75 Score=599.05 Aligned_cols=370 Identities=37% Similarity=0.633 Sum_probs=330.8
Q ss_pred CCCCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEee
Q 014169 20 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHT 99 (429)
Q Consensus 20 ~~~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~ 99 (429)
....|+.++||.++|++|++||+++++|+++||+||+++++++|+|||+|+|+|.|+++.|+++|++||++++..+
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 4567899999999999999999999999999999999988899999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCH
Q 014169 100 DNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 179 (429)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~ 179 (429)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.++.+... ...++
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~~-----~~~~v 290 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGDA-----ATLDV 290 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhhh-----hhCcH
Confidence 2679999999999999865 899999999998876 78888886543332211 23689
Q ss_pred HHHHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCC
Q 014169 180 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGD 258 (429)
Q Consensus 180 ~dvl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~ 258 (429)
+|+|++||++++++++|++++ |+++||+|||||+|..+++.++|+|++++|.. .++.+.|+||+||++ +++|+
T Consensus 291 ldvL~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd---- 364 (530)
T PRK06214 291 LAALEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGT---- 364 (530)
T ss_pred HHHHHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCC----
Confidence 999999999999999999999 99999999999999866789999999998874 567789999999985 99998
Q ss_pred ccEEEEEEeCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHH
Q 014169 259 CSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 337 (429)
Q Consensus 259 ~~~v~v~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~ 337 (429)
.|.++++.+ +|.+|.+..+|+||||+|||||||+||++++... + ..++++||||||+.+.|++|++||++|.+
T Consensus 365 --~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~---~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~ 438 (530)
T PRK06214 365 --RVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAAT---K-APGRNWLFFGHQRSATDFFYEDELNGLKA 438 (530)
T ss_pred --EEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHh---c-CCCCeEEEEEecCChhhhHHHHHHHHHHH
Confidence 999987543 5999977778999999999999999999998763 1 45789999999886669999999999999
Q ss_pred cCCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 014169 338 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 417 (429)
Q Consensus 338 ~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 417 (429)
.+.+++++++|||++..++|||++|.++.+.+++++.++++||||||++.|+++|+++|.++++++++++.++|++|+++
T Consensus 439 ~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~ 518 (530)
T PRK06214 439 AGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAE 518 (530)
T ss_pred hCCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99988899999999888999999999988889998878899999999666889999999999999999999999999999
Q ss_pred HHHCCCeEEeeC
Q 014169 418 FQMEGRYLRDVW 429 (429)
Q Consensus 418 l~~~~Ry~~dvw 429 (429)
|+++|||++|||
T Consensus 519 l~~~gRY~~Dvw 530 (530)
T PRK06214 519 LKKAGRYQADVY 530 (530)
T ss_pred HHHCCCEEEecC
Confidence 999999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=7.4e-51 Score=380.79 Aligned_cols=219 Identities=44% Similarity=0.779 Sum_probs=190.2
Q ss_pred CCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCC
Q 014169 22 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 101 (429)
Q Consensus 22 ~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~ 101 (429)
+||++++||.|+|++|++||+++++|+|+||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.|.++...
T Consensus 1 ~~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~ 80 (219)
T PF00667_consen 1 PPYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKE 80 (219)
T ss_dssp SSHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESS
T ss_pred CCcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEecc
Confidence 48999999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHH
Q 014169 102 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 181 (429)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~d 181 (429)
... ....++|.++||+++|++|+||+++|++.||+.||.||+|+++|++|++|++.+|+++|.+|+.+.+++++|
T Consensus 81 ~~~-----~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~d 155 (219)
T PF00667_consen 81 QNN-----SVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLD 155 (219)
T ss_dssp TTS-----SCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHH
T ss_pred ccc-----ccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHH
Confidence 531 356789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHH
Q 014169 182 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 246 (429)
Q Consensus 182 vl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~ 246 (429)
+|.+||++++|+++|++++ |+++||+|||||+|..+++.++|||++++|.++.|+.+.|+||+|
T Consensus 156 il~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 156 ILEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HHhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 9999999999999999999 999999999999999999999999999999999999999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=3.1e-44 Score=357.03 Aligned_cols=276 Identities=28% Similarity=0.465 Sum_probs=232.4
Q ss_pred CCCCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEee
Q 014169 20 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHT 99 (429)
Q Consensus 20 ~~~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~ 99 (429)
..+-|..++||.++|+.|.+|+..+...+++||+|+.++ .+.|+||..+.|.|+...
T Consensus 81 ~~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~---------------------- 137 (367)
T PLN03115 81 VVNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID---------------------- 137 (367)
T ss_pred ceEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC----------------------
Confidence 345689999999999999999998888899999999765 689999999999765210
Q ss_pred CCCCCCCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCH
Q 014169 100 DNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 179 (429)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~ 179 (429)
.+|
T Consensus 138 --------------------------------------------------------------~~g--------------- 140 (367)
T PLN03115 138 --------------------------------------------------------------KNG--------------- 140 (367)
T ss_pred --------------------------------------------------------------CCC---------------
Confidence 000
Q ss_pred HHHHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCC---CCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCC
Q 014169 180 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGN 256 (429)
Q Consensus 180 ~dvl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~---~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~ 256 (429)
.+..+|+|||||+|.. .++.++|+|+.+.|.+++|+...|.||+||+++++||
T Consensus 141 ----------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd-- 196 (367)
T PLN03115 141 ----------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGA-- 196 (367)
T ss_pred ----------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcC--
Confidence 1145799999999842 2468999999988877777778899999999999999
Q ss_pred CCccEEEEEEeCCCcc-CCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcC-CCCCCeEEEEecccCCcccccHHHHHH
Q 014169 257 GDCSWAPIFIRPSNFK-LPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNN 334 (429)
Q Consensus 257 ~~~~~v~v~~p~g~F~-lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~eL~~ 334 (429)
.|.+.+|.|.|. +|.+..+|+||||+|||||||+|||+++....... ...++++||||||+.+ |++|.+||++
T Consensus 197 ----~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~ 271 (367)
T PLN03115 197 ----EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEK 271 (367)
T ss_pred ----EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHH
Confidence 999999999654 56566789999999999999999999876432111 1146899999999998 9999999999
Q ss_pred HHHcCC-ccEEEEEEecCCC----CccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCH
Q 014169 335 FEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDS 408 (429)
Q Consensus 335 ~~~~~~-~~~l~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 408 (429)
|++... +++++.++||++. .++|||++|.++.+.+++++. ++++||+||| ++|+++|.++|.++....+ +
T Consensus 272 l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp-~~M~~~V~~~l~~l~~~~g-~-- 347 (367)
T PLN03115 272 MKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGL-KGMEKGIDDIMVSLAAKDG-I-- 347 (367)
T ss_pred HHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCC-HHHHHHHHHHHHHHHHHhC-c--
Confidence 998754 7899999999864 478999999998888888775 5689999999 8999999999999998764 4
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 014169 409 SKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 409 ~~a~~~~~~l~~~~Ry~~dvw 429 (429)
++++++++|+++|||++|+|
T Consensus 348 -~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 348 -DWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred -cHHHHHHHHHHCCCeEEecC
Confidence 48999999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=7.4e-42 Score=329.21 Aligned_cols=245 Identities=46% Similarity=0.828 Sum_probs=210.3
Q ss_pred CCHHHHHHhCC---CCCCChHHHHHhhcCC-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCC
Q 014169 177 RSLLEVMAEFP---SATPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP 252 (429)
Q Consensus 177 ~~~~dvl~~f~---~~~~~~gq~l~~~~p~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~ 252 (429)
+++..+..+.| ...+.+|||+.+.+|+ ..+|+|||||+|...++.++|+|+.+.++.+.+..+.|.+|.||+++++
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~ 94 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL 94 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC
Confidence 34444444554 3467899999998554 4689999999997546899999999877665556677999999999999
Q ss_pred CCCCCCccEEEEEEeCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccC-CcccccHH
Q 014169 253 LEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNR-RMDFIYED 330 (429)
Q Consensus 253 G~~~~~~~~v~v~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~-~~d~ly~~ 330 (429)
|+ .|.+.+|.| .|.++.+..+|+||||+|||||||+||+++++....++...++++||||+|+. + |++|.+
T Consensus 95 Gd------~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~-d~~~~d 167 (267)
T cd06182 95 GA------KVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFAS-DYLYRE 167 (267)
T ss_pred CC------EEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcc-cccHHH
Confidence 98 999999999 99998776789999999999999999999987632112245789999999999 7 999999
Q ss_pred HHHHHHHcCCccEEEEEEecCCCC-ccchhhhHHHhHHHHHHhhcCCcEEEEeCCCch-hHHHHHHHHHHHHHHccCCCH
Q 014169 331 ELNNFEEEGVISELILAFSREGSQ-KEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKG-MARDVHRTLHTIVQEQENVDS 408 (429)
Q Consensus 331 eL~~~~~~~~~~~l~~a~Sr~~~~-k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~-M~~~v~~~L~~i~~~~~~~~~ 408 (429)
+|++|++.+.++++++++||++.. ++||++.+.+..+.+++.+.+++.||+||| +. |+++|.++|.+++.++++++.
T Consensus 168 el~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp-~~~m~~~v~~~L~~~~~~~~~~~~ 246 (267)
T cd06182 168 ELQEALKDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGD-AKSMAKDVEDALVKIIAKAGGVDE 246 (267)
T ss_pred HHHHHHhCCCcceEEEEEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECC-cccchHHHHHHHHHHHHHcCCCCH
Confidence 999999988888999999997654 789999988777777766666679999999 78 999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 014169 409 SKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 409 ~~a~~~~~~l~~~~Ry~~dvw 429 (429)
++|+.++++|+++|||++|+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 247 SDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHHHHHHHHHHHcCCeEEecC
Confidence 999999999999999999999
No 16
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=6.4e-38 Score=318.48 Aligned_cols=271 Identities=24% Similarity=0.439 Sum_probs=221.0
Q ss_pred CCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCCHHHHHHHHHHhCCCCCcEEEEeeCC
Q 014169 22 ASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDN 101 (429)
Q Consensus 22 ~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~ 101 (429)
+-|..++|+.++|+.+++|+..+...+++||.|+.++....|+||..+.|.++...
T Consensus 135 ~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------ 190 (411)
T TIGR03224 135 NLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------ 190 (411)
T ss_pred ccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC------------------------
Confidence 44778888999999999999888778999999998765688999999988654210
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhccCCCChhHHHHHHHhcCCCHHH
Q 014169 102 EDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLE 181 (429)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~s~~g~~~~~~~~~~~~~~~~d 181 (429)
.+|
T Consensus 191 ------------------------------------------------------------~~g----------------- 193 (411)
T TIGR03224 191 ------------------------------------------------------------ASG----------------- 193 (411)
T ss_pred ------------------------------------------------------------cCC-----------------
Confidence 000
Q ss_pred HHHhCCCCCCChHHHHHhhcCCCCCceeecCCCCCCC---CCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCC
Q 014169 182 VMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGD 258 (429)
Q Consensus 182 vl~~f~~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~ 258 (429)
.+...|+|||+|+|... .+.++|+|+++.. ...|+.+.|.+|+||+++++||
T Consensus 194 --------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd---- 248 (411)
T TIGR03224 194 --------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGD---- 248 (411)
T ss_pred --------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcC----
Confidence 11457999999987421 1479999998863 2345667899999999999999
Q ss_pred ccEEEEEEeCCC-ccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHH
Q 014169 259 CSWAPIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 337 (429)
Q Consensus 259 ~~~v~v~~p~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~ 337 (429)
.|.+.+|.|. |.++....+|+||||||||||||+||++++......+ ..++++||||+|+.+ |++|.+||++|.+
T Consensus 249 --~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~ 324 (411)
T TIGR03224 249 --KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPK 324 (411)
T ss_pred --EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHh
Confidence 9999999995 6676555689999999999999999999987543222 468999999999999 9999999999987
Q ss_pred cCCccEEEEEEecCCC-CccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHH
Q 014169 338 EGVISELILAFSREGS-QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIV 415 (429)
Q Consensus 338 ~~~~~~l~~a~Sr~~~-~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~ 415 (429)
... ++++++||+++ .++|||+.+.+..+.+.+++. .++.||+||| ++|++++.+.|.+++.+. ++. +++++
T Consensus 325 ~~~--~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp-~~M~~~v~~~L~~~~~~~-~~~---~~~~~ 397 (411)
T TIGR03224 325 DFI--DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGL-KGMEEGVLDAFRDVCATN-GLS---WETLE 397 (411)
T ss_pred cCc--eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECC-HHHHHHHHHHHHHHHHHc-CcC---HHHHH
Confidence 553 46779998654 589999999888777777664 4579999999 899999999999999654 444 67899
Q ss_pred HHHHHCCCeEEeeC
Q 014169 416 KKFQMEGRYLRDVW 429 (429)
Q Consensus 416 ~~l~~~~Ry~~dvw 429 (429)
++|+++|||+.|+|
T Consensus 398 ~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 398 PRLRAEGRLHLETY 411 (411)
T ss_pred HHHHHCCCeEEecC
Confidence 99999999999999
No 17
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=1.7e-38 Score=302.47 Aligned_cols=212 Identities=33% Similarity=0.505 Sum_probs=180.3
Q ss_pred CCCChHHHHHhhcCC-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEE
Q 014169 189 ATPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 266 (429)
..+.+|||+.+.++. ..+|+|||||+|. ++.++|+|+.+... +.+.|.+|+||++ +++|+ .|.+.+
T Consensus 30 ~~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~Gd------~v~i~g 97 (245)
T cd06200 30 AQWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPIGA------SVALRL 97 (245)
T ss_pred CCccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCCCC------EEEEEe
Confidence 467899999998443 5789999999995 47899999877421 1235899999998 58998 999999
Q ss_pred eCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEE
Q 014169 267 RPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 345 (429)
Q Consensus 267 p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~ 345 (429)
|.| .|.++. ..+|+||||+|||||||+||++++... ..++++||||+|+.+.|++|.+||++|++.+.+++++
T Consensus 98 p~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~-----~~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~ 171 (245)
T cd06200 98 RENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARA-----GRHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLD 171 (245)
T ss_pred cCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhc-----cCCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEE
Confidence 866 888875 468999999999999999999998752 2367999999999844899999999999999988999
Q ss_pred EEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCc-hhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCe
Q 014169 346 LAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAK-GMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRY 424 (429)
Q Consensus 346 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 424 (429)
.++|+++..++||++.+.+..+.+.+++..++.||+||| + +|+++|.+.|.+++.+ +.+++|+++|||
T Consensus 172 ~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp-~~~m~~~v~~~l~~~~~~----------~~~~~~~~~~r~ 240 (245)
T cd06200 172 LAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGS-LQGMAPGVDAVLDEILGE----------EAVEALLAAGRY 240 (245)
T ss_pred EEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECC-chhhhHHHHHHHHHHHHH----------HHHHHHHHCCCe
Confidence 999998777899999998877666665556789999999 7 9999999999999953 348999999999
Q ss_pred EEeeC
Q 014169 425 LRDVW 429 (429)
Q Consensus 425 ~~dvw 429 (429)
.+|+|
T Consensus 241 ~~d~~ 245 (245)
T cd06200 241 RRDVY 245 (245)
T ss_pred EEecC
Confidence 99999
No 18
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=2.5e-38 Score=310.75 Aligned_cols=229 Identities=28% Similarity=0.418 Sum_probs=185.5
Q ss_pred CCCChHHHHHhhcCCC---------CCceeecCCCCCCC---CCeeEEEEEEEEccCCCCC----cccCcccHHhhhcCC
Q 014169 189 ATPPIGVFFAAVAPHL---------QPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGR----IHKGVCSTWMKNAIP 252 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~---------~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~g~----~~~G~~S~~L~~l~~ 252 (429)
..+.+|||+.+.+|.. ..|+|||||+|... +..++|+|+++.+.++... ...|.+|+||+++++
T Consensus 55 ~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~ 134 (307)
T PLN03116 55 VPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP 134 (307)
T ss_pred CceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC
Confidence 4568999999985431 47999999999532 2379999998865544211 257999999999999
Q ss_pred CCCCCCccEEEEEEeCCCccC-CC-CCCCCEEEEccCcccchhHHHHHHHHHHhhc-CCCCCCeEEEEecccCCcccccH
Q 014169 253 LEGNGDCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYE 329 (429)
Q Consensus 253 G~~~~~~~~v~v~~p~g~F~l-p~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~ 329 (429)
|+ .|.|.+|.|.|.+ +. +..+|+||||||||||||+||+++++..... ....++++||||+|+.+ |++|.
T Consensus 135 Gd------~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~ 207 (307)
T PLN03116 135 GD------KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYD 207 (307)
T ss_pred CC------EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHH
Confidence 98 9999999998876 43 4457999999999999999999988753210 01236899999999998 99999
Q ss_pred HHHHHHHHcCC-ccEEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHcc
Q 014169 330 DELNNFEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQE 404 (429)
Q Consensus 330 ~eL~~~~~~~~-~~~l~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~ 404 (429)
+||++|++.+. +++++.++||++. .++||++.|.+..+.++..+..++.||+||| +.|++++.++|.+++.+.
T Consensus 208 deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp-~~mv~~v~~~L~~~~~~~- 285 (307)
T PLN03116 208 DEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGL-KGMMPGIQDTLKRVAEER- 285 (307)
T ss_pred HHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCC-HHHHHHHHHHHHHHHHHc-
Confidence 99999998875 6889999999754 3679999888766665554555789999999 899999999999987664
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEeeC
Q 014169 405 NVDSSKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 405 ~~~~~~a~~~~~~l~~~~Ry~~dvw 429 (429)
|++ |+++++.|+++|||++|+|
T Consensus 286 g~~---~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 286 GES---WEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred Ccc---HHHHHHHHHHcCceEEecC
Confidence 554 6789999999999999999
No 19
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=1.2e-37 Score=303.31 Aligned_cols=228 Identities=29% Similarity=0.466 Sum_probs=187.0
Q ss_pred CCCChHHHHHhhcCC--------CCCceeecCCCCCCC---CCeeEEEEEEEEccCCCC-CcccCcccHHhhhcCCCCCC
Q 014169 189 ATPPIGVFFAAVAPH--------LQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGN 256 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~--------~~pR~YSIaSsp~~~---~~~i~l~v~~v~~~~~~g-~~~~G~~S~~L~~l~~G~~~ 256 (429)
..+.+|||+.+..|+ ...|+|||||+|... ++.++|+|+.+.+.++.+ ..+.|.+|+||+++++|+
T Consensus 39 ~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd-- 116 (286)
T cd06208 39 LPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGD-- 116 (286)
T ss_pred ccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCC--
Confidence 456789999997543 236999999998542 468999999987654432 345699999999999998
Q ss_pred CCccEEEEEEeCCCccCC-CCCCCCEEEEccCcccchhHHHHHHHHHHhhc-CCCCCCeEEEEecccCCcccccHHHHHH
Q 014169 257 GDCSWAPIFIRPSNFKLP-ANPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNN 334 (429)
Q Consensus 257 ~~~~~v~v~~p~g~F~lp-~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~eL~~ 334 (429)
.|.+.+|.|.|.+. .+..+|+||||+|||||||+||+++++..... ....++++|+||+|+.+ |++|.++|++
T Consensus 117 ----~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~ 191 (286)
T cd06208 117 ----DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEK 191 (286)
T ss_pred ----EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHH
Confidence 99999999977654 34457999999999999999999998763210 01357899999999999 9999999999
Q ss_pred HHHcCC-ccEEEEEEecCCC----CccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCH
Q 014169 335 FEEEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDS 408 (429)
Q Consensus 335 ~~~~~~-~~~l~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~ 408 (429)
+++... ++++++++||++. .++||++.+.+..+.+++.+. .++.||+||| ++|+++|.+.|.+++. +.
T Consensus 192 l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp-~~m~~~v~~~L~~~~~-----~~ 265 (286)
T cd06208 192 YPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGL-KGMEPGVDDALTSVAE-----GG 265 (286)
T ss_pred HHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCC-chHHHHHHHHHHHHHh-----cc
Confidence 998753 6789999998754 468999999887667766665 3469999999 8999999999999986 23
Q ss_pred HHHHHHHHHHHHCCCeEEeeC
Q 014169 409 SKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 409 ~~a~~~~~~l~~~~Ry~~dvw 429 (429)
.+|++++++|+++|||+.|+|
T Consensus 266 ~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 266 LAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred HHHHHHHHHHHHcCCeEEecC
Confidence 579999999999999999999
No 20
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.6e-35 Score=288.46 Aligned_cols=206 Identities=30% Similarity=0.601 Sum_probs=174.0
Q ss_pred CCCChHHHHHhhcCC-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEE-
Q 014169 189 ATPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI- 266 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~- 266 (429)
..+.+|||+.+..++ ..+|+|||+|+|. .+.++|+|+.+ ..|.+|+||+++++|+ .|.+.+
T Consensus 82 ~~~~pGQ~v~v~~~g~~~~R~YSias~p~--~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~v~~~ 144 (289)
T cd06201 82 PSFEAGDLLGILPPGSDVPRFYSLASSSS--DGFLEICVRKH---------PGGLCSGYLHGLKPGD------TIKAFIR 144 (289)
T ss_pred CCcCccCEEEEecCCCCCCceEecCCCCC--CCeEEEEEEeC---------CCccchhhHhhCCCcC------EEEEEec
Confidence 346799999998443 3579999999984 47899999854 2599999999999998 999886
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
+.|.|.++. ..+|+||||+|||||||+||+++.. ..++++|+||+|+.+.|++|++||++|++.+.+++++.
T Consensus 145 ~~g~F~~~~-~~~~lvlIAgGtGIaP~~s~l~~~~-------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~ 216 (289)
T cd06201 145 PNPSFRPAK-GAAPVILIGAGTGIAPLAGFIRANA-------ARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHT 216 (289)
T ss_pred cCCCccCCC-CCCCEEEEecCcCHHHHHHHHHhhh-------ccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEE
Confidence 567998863 4689999999999999999998752 24689999999998548999999999999888888999
Q ss_pred EEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCCeEE
Q 014169 347 AFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGRYLR 426 (429)
Q Consensus 347 a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 426 (429)
++|+++ .++||++.+....+.+..++.+++.||+||| +.|+++|.+.|.+++.+++ + -+.+++++|||.+
T Consensus 217 ~~s~~~-~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp-~~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~ 286 (289)
T cd06201 217 AFSRTP-DGAYVQDRLRADAERLRRLIEDGAQIMVCGS-RAMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAE 286 (289)
T ss_pred EECCCC-CcccchhHHHHhHHHHHHHHHCCcEEEEECC-HHHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEe
Confidence 999875 4789999988776666666667889999999 8999999999999996543 2 3888999999999
Q ss_pred eeC
Q 014169 427 DVW 429 (429)
Q Consensus 427 dvw 429 (429)
|+|
T Consensus 287 d~y 289 (289)
T cd06201 287 DVY 289 (289)
T ss_pred ecC
Confidence 998
No 21
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.96 E-value=5.2e-30 Score=249.30 Aligned_cols=210 Identities=17% Similarity=0.303 Sum_probs=159.9
Q ss_pred CCHHHHHHhCCC---CCCChHHHHHhhcCCC--------------------------------CCceeecCCCCCCCCCe
Q 014169 177 RSLLEVMAEFPS---ATPPIGVFFAAVAPHL--------------------------------QPRYYSISSSPRFAPDR 221 (429)
Q Consensus 177 ~~~~dvl~~f~~---~~~~~gq~l~~~~p~~--------------------------------~pR~YSIaSsp~~~~~~ 221 (429)
.++..+..+.+. ..+.+|||+.+.+|.. ..|+|||+|+|.. .+.
T Consensus 22 ~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~-~~~ 100 (283)
T cd06188 22 TFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYSLANYPAE-EGE 100 (283)
T ss_pred chhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccCcCCCCCC-CCe
Confidence 344555555543 3567999999986632 2499999999964 478
Q ss_pred eEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHH
Q 014169 222 VHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERM 301 (429)
Q Consensus 222 i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~ 301 (429)
++|+|++........+...|.+|+||+++++|+ .|.+.+|.|.|.++. ..+|+||||+|||||||+||+++++
T Consensus 101 l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~~vlIAgGtGItP~~s~l~~~~ 173 (283)
T cd06188 101 LKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGD------KVTASGPFGEFFIKD-TDREMVFIGGGAGMAPLRSHIFHLL 173 (283)
T ss_pred EEEEEEEeccCCccCCCCCceehhHHhcCCCCC------EEEEECccccccccC-CCCcEEEEEecccHhHHHHHHHHHH
Confidence 999998753211000234699999999999998 999999999998864 4679999999999999999999876
Q ss_pred HHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCC------CccchhhhHHHhHHHHHHhh-c
Q 014169 302 ALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLL-S 374 (429)
Q Consensus 302 ~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~l-~ 374 (429)
.. +....+++|+||+|+.+ |++|.+||+++++.+.++++++++|++.. .++||++.+.+.. +.... .
T Consensus 174 ~~---~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~~--~~~~~~~ 247 (283)
T cd06188 174 KT---LKSKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQVLLENY--LKKHPAP 247 (283)
T ss_pred hc---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHHHHHHH--hccCCCC
Confidence 52 11246899999999998 99999999999988888889888887531 3578887665432 11111 1
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 375 KEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 375 ~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
.+..||+||| ++|++++.+.|.+.+.
T Consensus 248 ~~~~vyiCGP-~~m~~~~~~~l~~~Gv 273 (283)
T cd06188 248 EDIEFYLCGP-PPMNSAVIKMLDDLGV 273 (283)
T ss_pred CCeEEEEECC-HHHHHHHHHHHHHcCC
Confidence 3568999999 8999999999987643
No 22
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.96 E-value=1.1e-29 Score=238.70 Aligned_cols=195 Identities=18% Similarity=0.281 Sum_probs=157.9
Q ss_pred HHHHHHhCC-CCCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCC
Q 014169 179 LLEVMAEFP-SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGN 256 (429)
Q Consensus 179 ~~dvl~~f~-~~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~ 256 (429)
+..+....| ...+.+|||+.+.+|....|+|||+|.|.. .+.++|+|+.+ ..|.+|++|.+ +++|+
T Consensus 13 ~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~-- 80 (224)
T cd06189 13 VYRVRLKPPAPLDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAV---------PGGSFSDYVFEELKENG-- 80 (224)
T ss_pred eEEEEEecCCCcccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEec---------CCCccHHHHHHhccCCC--
Confidence 333333444 356789999999877777999999999864 47899999865 24999999987 99998
Q ss_pred CCccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHH
Q 014169 257 GDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 336 (429)
Q Consensus 257 ~~~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~ 336 (429)
.|.+.+|.|.|.++.+..+++||||+|||||||++++++.... ....+++|+||+|+.+ |++|.+||++++
T Consensus 81 ----~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~ 151 (224)
T cd06189 81 ----LVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQ----GSKRPIHLYWGARTEE-DLYLDELLEAWA 151 (224)
T ss_pred ----EEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhc----CCCCCEEEEEecCChh-hccCHHHHHHHH
Confidence 9999999999988766578999999999999999999998762 1457899999999998 999999999999
Q ss_pred HcCCccEEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 337 EEGVISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 337 ~~~~~~~l~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+...+++++.++|++++ .++|+++.+.+... -..+..+|+||| +.|++++.+.|.+.+
T Consensus 152 ~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp-~~m~~~~~~~l~~~G 213 (224)
T cd06189 152 EAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGS-PEMVYAARDDFVEKG 213 (224)
T ss_pred HhCCCeEEEEEeCCCCcCCccccccHHHHHHhhcc-----CccccEEEEECC-HHHHHHHHHHHHHcC
Confidence 88888889989998643 45677776543221 014578999999 899999999997754
No 23
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.96 E-value=1.7e-29 Score=236.33 Aligned_cols=190 Identities=28% Similarity=0.430 Sum_probs=152.3
Q ss_pred CCCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 014169 189 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 265 (429)
..+.+|||+.+.+|. ...|+|||+|+|.. .+.++|+|+.+. .|.+|+||+++++|+ .+.+.
T Consensus 21 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G~------~v~i~ 84 (223)
T cd00322 21 FSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPGD------EVEVS 84 (223)
T ss_pred CCcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCCC------EEEEE
Confidence 456899999998664 57899999999865 478999999762 499999999999998 99999
Q ss_pred EeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEE
Q 014169 266 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 345 (429)
Q Consensus 266 ~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~ 345 (429)
+|.|.|.++....+++||||+|||||||++|++++... ...++++|+||+|+.+ |++|.+||+++++.+.+++++
T Consensus 85 gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 159 (223)
T cd00322 85 GPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD----KPGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLV 159 (223)
T ss_pred CCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhh----CCCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEE
Confidence 99998876655678999999999999999999998762 1457899999999999 999999999999988888899
Q ss_pred EEEecCCCCccchhhhHHHhHHHHHHhh-cCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 346 LAFSREGSQKEYVQHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 346 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~l-~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+++++++....+..+.+........... ..+..+|+||| +.|++.+.+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp-~~m~~~~~~~L~~~g 214 (223)
T cd00322 160 LALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGP-PAMAKAVREALVSLG 214 (223)
T ss_pred EEecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 9999876543333332221111111111 24678999999 899999999997754
No 24
>PRK08051 fre FMN reductase; Validated
Probab=99.96 E-value=1.5e-29 Score=238.98 Aligned_cols=186 Identities=18% Similarity=0.211 Sum_probs=149.5
Q ss_pred CCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHh-hhcCCCCCCCCccEEEEEEe
Q 014169 189 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWAPIFIR 267 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L-~~l~~G~~~~~~~~v~v~~p 267 (429)
..+.+|||+.+.++....|+|||+|.|.. ++.++|+|+.+. .|..|.++ .++++|+ .|.+.+|
T Consensus 28 ~~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G~------~v~v~gP 91 (232)
T PRK08051 28 FSFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKDG------EIEVDIP 91 (232)
T ss_pred CccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCCC------EEEEEcC
Confidence 45789999999877777899999999964 478999998652 25555555 5699998 9999999
Q ss_pred CCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEE
Q 014169 268 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 347 (429)
Q Consensus 268 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a 347 (429)
.|.|.++.+..+|+|||||||||||+++|++++... + ...+++|+||+|+.+ |.+|.+||+++++.+.+++++.+
T Consensus 92 ~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~---~-~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 166 (232)
T PRK08051 92 HGDAWLREESERPLLLIAGGTGFSYARSILLTALAQ---G-PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPV 166 (232)
T ss_pred CCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHh---C-CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEE
Confidence 998887755568999999999999999999998762 2 457899999999999 99999999999998888889999
Q ss_pred EecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHH-HHHHH
Q 014169 348 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTL-HTIVQ 401 (429)
Q Consensus 348 ~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L-~~i~~ 401 (429)
+|++++ .++++++.+.+... + ..+..||+||| ++|+++|.+.| .+.+.
T Consensus 167 ~~~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp-~~m~~~v~~~l~~~~G~ 219 (232)
T PRK08051 167 VEQPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGR-FEMAKIARELFCRERGA 219 (232)
T ss_pred eCCCCCCcccceeeehHHHHhhcc---C--cccCEEEEECC-HHHHHHHHHHHHHHcCC
Confidence 987643 35677765543211 0 13468999999 89999999988 66543
No 25
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.96 E-value=2.8e-29 Score=238.06 Aligned_cols=186 Identities=24% Similarity=0.335 Sum_probs=152.1
Q ss_pred CCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEEe
Q 014169 190 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 267 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~p 267 (429)
.+.+|||+.+.+|.. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||+ .+++|+ .|.+.+|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLV---------PGGIATTYVHKQLKEGD------ELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEEC---------CCCcchhhHhhcCCCCC------EEEEECC
Confidence 578999999986765 5899999999864 47899999865 2499999997 599998 9999999
Q ss_pred CCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEE
Q 014169 268 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 347 (429)
Q Consensus 268 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a 347 (429)
.|.|.++.+..+++||||+|||||||+++++++... + ...+++|+||+|+.+ |++|.++|+++++...+++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLER---G-DTRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhc---C-CCCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 999988765558999999999999999999998752 2 346899999999999 99999999999988777889999
Q ss_pred EecCCC------CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 348 FSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 348 ~Sr~~~------~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+|++.. .++|+++.+.+.... ..+++.+|+||| +.|++++.+.|.+.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp-~~m~~~~~~~L~~~Gv 228 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGP-PPMIDACIKTLMQGRL 228 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 998642 346777655432110 013578999999 8999999999987643
No 26
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.96 E-value=2.2e-29 Score=251.01 Aligned_cols=196 Identities=17% Similarity=0.280 Sum_probs=157.5
Q ss_pred CHHHHHHhCCC---CCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCC
Q 014169 178 SLLEVMAEFPS---ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPL 253 (429)
Q Consensus 178 ~~~dvl~~f~~---~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G 253 (429)
++..+..+.|. ..+.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +++|
T Consensus 116 d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~l~~~l~~G 185 (339)
T PRK07609 116 DVMRLKLRLPATERLQYLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHM---------PGGVFTDHVFGALKER 185 (339)
T ss_pred cEEEEEEEcCCCCCCccCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEec---------CCCccHHHHHHhccCC
Confidence 34444444442 35679999999877667899999999965 47899999865 25999999975 9999
Q ss_pred CCCCCccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHH
Q 014169 254 EGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELN 333 (429)
Q Consensus 254 ~~~~~~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~ 333 (429)
+ .|.+.+|.|.|.++....+|+||||||||||||+||++++... + ..++++||||+|+.+ |+++.++|+
T Consensus 186 ~------~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~---~-~~~~i~l~~g~r~~~-dl~~~e~l~ 254 (339)
T PRK07609 186 D------ILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAK---G-IQRPVTLYWGARRPE-DLYLSALAE 254 (339)
T ss_pred C------EEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhc---C-CCCcEEEEEecCChH-HhccHHHHH
Confidence 8 9999999999998765678999999999999999999998762 2 456899999999999 999999999
Q ss_pred HHHHcCCccEEEEEEecCCC------CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 334 NFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 334 ~~~~~~~~~~l~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+|++...+++++.++|++.. .++|+++.+.+.... ..+..+|+||| +.|++++.+.|.+.+
T Consensus 255 ~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp-~~m~~~~~~~l~~~G 321 (339)
T PRK07609 255 QWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGS-PVMVYAARDDFVAAG 321 (339)
T ss_pred HHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 99988778889999998421 357777766432211 13578999999 899999999997754
No 27
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.96 E-value=1.7e-29 Score=241.06 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=146.2
Q ss_pred CCChHHHHHhhcC--C-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEE
Q 014169 190 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 266 (429)
.+.+|||+.+.++ + ...|+|||+|+|.. +.++|+|+.+ ..|.+|+||+++++|+ .|.+.+
T Consensus 30 ~~~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~g 92 (248)
T PRK10926 30 PFTAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVTV---------PEGKLSPRLAALKPGD------EVQVVS 92 (248)
T ss_pred CCCCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEEe---------CCCCcChHHHhCCCCC------EEEEec
Confidence 5679999988753 2 23699999999853 5799999876 2499999999999998 999999
Q ss_pred eCC-CccCCCC-CCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcC-CccE
Q 014169 267 RPS-NFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISE 343 (429)
Q Consensus 267 p~g-~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~-~~~~ 343 (429)
|.+ .|.++.. ..+|+||||||||||||+||++++... ...++++|+||+|+.+ |++|.+||++|++.. ..++
T Consensus 93 p~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~----~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~ 167 (248)
T PRK10926 93 EAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL----ERFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLR 167 (248)
T ss_pred CCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh----CCCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEE
Confidence 874 6676643 347999999999999999999987642 2457899999999998 999999999998875 4678
Q ss_pred EEEEEecCCC---CccchhhhHHHh-HHHHHH-hh-cCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 344 LILAFSREGS---QKEYVQHKMMDK-AAQLWS-LL-SKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 344 l~~a~Sr~~~---~k~yvq~~l~~~-~~~l~~-~l-~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++.++||++. .++++++.+.+. ...... .+ .+++.+|+||| +.|++++.+.|.+..
T Consensus 168 v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp-~~Mv~~~~~~l~~~~ 229 (248)
T PRK10926 168 IQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGN-PQMVRDTQQLLKETR 229 (248)
T ss_pred EEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECC-HHHHHHHHHHHHHhc
Confidence 9999998653 246777655332 111111 11 24578999999 899999999887643
No 28
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.96 E-value=3.5e-29 Score=255.35 Aligned_cols=209 Identities=17% Similarity=0.297 Sum_probs=163.3
Q ss_pred CCHHHHHHhCC---CCCCChHHHHHhhcCC--------------------------------CCCceeecCCCCCCCCCe
Q 014169 177 RSLLEVMAEFP---SATPPIGVFFAAVAPH--------------------------------LQPRYYSISSSPRFAPDR 221 (429)
Q Consensus 177 ~~~~dvl~~f~---~~~~~~gq~l~~~~p~--------------------------------~~pR~YSIaSsp~~~~~~ 221 (429)
..+.++..+.+ ...+.+|||+.+.+|. ...|+|||+|.|.. .+.
T Consensus 146 ~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~-~~~ 224 (409)
T PRK05464 146 TFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPEE-KGI 224 (409)
T ss_pred chhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCCC-CCe
Confidence 34455544444 2456899999997663 34699999999965 468
Q ss_pred eEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHH
Q 014169 222 VHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERM 301 (429)
Q Consensus 222 i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~ 301 (429)
++|+|+++.+....++...|.+|+||+++++|+ .|.|.+|.|.|.++. ..+|+||||+|||||||+||+++.+
T Consensus 225 l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~gP~G~f~~~~-~~~~ivlIAgGtGIaP~~sml~~~l 297 (409)
T PRK05464 225 IMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRSHIFDQL 297 (409)
T ss_pred EEEEEEEeecCCCcCCCCCCchhhHHHhCCCCC------EEEEEccccCcEecC-CCceEEEEEeccChhHHHHHHHHHH
Confidence 999999875554444556799999999999999 999999999998763 5689999999999999999999877
Q ss_pred HHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCC------CccchhhhHHHhHHHHHHhh-c
Q 014169 302 ALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLL-S 374 (429)
Q Consensus 302 ~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~l-~ 374 (429)
... ....+++||||+|+.+ |++|.++|+++++...++++++++|++.. .++++++.+.+.. +.+.. .
T Consensus 298 ~~~---~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~ 371 (409)
T PRK05464 298 KRL---KSKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLYENY--LKDHEAP 371 (409)
T ss_pred hCC---CCCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHHHhh--hhhcCCC
Confidence 521 1346899999999999 99999999999988888889999987532 3567777664432 11111 1
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 375 KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 375 ~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
.+..||+||| ++|++++.+.|.+.+
T Consensus 372 ~~~~vyiCGP-~~m~~av~~~L~~~G 396 (409)
T PRK05464 372 EDCEYYMCGP-PMMNAAVIKMLKDLG 396 (409)
T ss_pred CCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 3578999999 899999999997754
No 29
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.96 E-value=9e-29 Score=234.94 Aligned_cols=191 Identities=20% Similarity=0.269 Sum_probs=153.6
Q ss_pred CCCChHHHHHhhcCCC----CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEE
Q 014169 189 ATPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 264 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v 264 (429)
..+.+|||+.+.+|.. ..|+|||+|.|.. +.++|+|+.+. .|.+|+||+++++|+ .|.+
T Consensus 23 ~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~Gd------~v~v 85 (241)
T cd06195 23 FRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPGD------TIYV 85 (241)
T ss_pred CccCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCCC------EEEE
Confidence 3567999999976643 4699999999864 78999998652 499999999999998 9999
Q ss_pred E-EeCCCccCCCC-CCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHc-CCc
Q 014169 265 F-IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVI 341 (429)
Q Consensus 265 ~-~p~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~-~~~ 341 (429)
. +|.|.|.++.. ..+++||||+|||||||++++++.... ...++++|+||+|+.+ |++|.+||+++++. ..+
T Consensus 86 ~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~----~~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~ 160 (241)
T cd06195 86 GKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW----ERFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGK 160 (241)
T ss_pred CcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh----CCCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCC
Confidence 9 99999998765 457999999999999999999998752 2457899999999999 99999999999887 667
Q ss_pred cEEEEEEecCCCC---ccchhhhHHH-hHHHHHHh-h-cCCcEEEEeCCCchhHHHHHHHHHHHHHH
Q 014169 342 SELILAFSREGSQ---KEYVQHKMMD-KAAQLWSL-L-SKEGYLYVCGDAKGMARDVHRTLHTIVQE 402 (429)
Q Consensus 342 ~~l~~a~Sr~~~~---k~yvq~~l~~-~~~~l~~~-l-~~~~~vyvCGp~~~M~~~v~~~L~~i~~~ 402 (429)
++++.++|+++.. ++|+++.+.+ ........ . ..++.||+||| ++|++++.+.|.+.+..
T Consensus 161 ~~~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~~ 226 (241)
T cd06195 161 FRYVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN-PQMIDDTQELLKEKGFS 226 (241)
T ss_pred EEEEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC-HHHHHHHHHHHHHcCCC
Confidence 7888899987653 5788776642 11111111 1 24578999999 89999999999887643
No 30
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.96 E-value=6.8e-29 Score=234.94 Aligned_cols=186 Identities=24% Similarity=0.342 Sum_probs=151.2
Q ss_pred CCCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEE
Q 014169 189 ATPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 266 (429)
..+.+|||+.+.+|+. ..|+|||+|+|.. .+.++|+|+.. ..|.+|+||.+ +++|+ .|.+.+
T Consensus 33 ~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd------~v~i~g 96 (236)
T cd06210 33 AEFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLL---------PGGAFSTYLETRAKVGQ------RLNLRG 96 (236)
T ss_pred CCcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEc---------CCCccchhhhhCcCCCC------EEEEec
Confidence 3568999999986643 5799999999864 46899999865 24999999998 99998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|.++....+++||||+|||||||++|++++... + ...+++|+||+|+.+ |++|.++|+++++...++++++
T Consensus 97 P~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 171 (236)
T cd06210 97 PLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEW---G-EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRI 171 (236)
T ss_pred CcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhc---C-CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEE
Confidence 9999998765567999999999999999999998752 2 346899999999999 9999999999999888888999
Q ss_pred EEecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 347 AFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 347 a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++|++.. ..+++++.+.+.... ......+|+||| +.|++++++.|.+.+
T Consensus 172 ~~s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp-~~m~~~~~~~l~~~G 224 (236)
T cd06210 172 CVWRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGP-PGMVDAAFAAAREAG 224 (236)
T ss_pred EEcCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 9997543 345666655432111 123468999999 899999999998754
No 31
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.96 E-value=7.4e-29 Score=247.09 Aligned_cols=184 Identities=21% Similarity=0.313 Sum_probs=152.8
Q ss_pred CCCChHHHHHhhcCCCC-CceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEE
Q 014169 189 ATPPIGVFFAAVAPHLQ-PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~~-pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 266 (429)
..+.+|||+.+.+|+.. .|+|||+|+|.. .+.++|+|+.+ ..|.+|+||++ +++|+ .|.+.+
T Consensus 135 ~~~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~------~v~i~g 198 (340)
T PRK11872 135 LDFLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLL---------PDGVMSNYLRERCQVGD------EILFEA 198 (340)
T ss_pred cCcCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEEC---------CCCcchhhHhhCCCCCC------EEEEEc
Confidence 45789999999877654 799999999964 57899999875 24999999975 99998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|.++. ..+|+||||||||||||+||++++... + ..++++||||+|+.+ |++|.++|++|++...+++++.
T Consensus 199 P~G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~~---~-~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~ 272 (340)
T PRK11872 199 PLGAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAEQ---G-CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHP 272 (340)
T ss_pred CcceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHHc---C-CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEE
Confidence 999998864 358999999999999999999998762 2 446899999999999 9999999999999888899999
Q ss_pred EEecCCC----CccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 347 AFSREGS----QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 347 a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
++|+++. .+++|++.+.+.. +. ....||+||| +.|++++.+.|.+.+.
T Consensus 273 ~~s~~~~~~~g~~g~v~~~l~~~~------l~~~~~~vy~CGp-~~mv~~~~~~L~~~Gv 325 (340)
T PRK11872 273 VVSKASADWQGKRGYIHEHFDKAQ------LRDQAFDMYLCGP-PPMVEAVKQWLDEQAL 325 (340)
T ss_pred EEeCCCCcCCCceeeccHHHHHhh------cCcCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 9987543 3577877664321 22 3468999999 8999999999987653
No 32
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.96 E-value=9.7e-29 Score=233.26 Aligned_cols=188 Identities=21% Similarity=0.182 Sum_probs=152.2
Q ss_pred CCCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEE
Q 014169 189 ATPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 266 (429)
..+.+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+ ..|.+|.||++ +++|+ .|.|.+
T Consensus 22 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~------~v~v~g 85 (232)
T cd06190 22 ADFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRK---------PGGAASNALFDNLEPGD------ELELDG 85 (232)
T ss_pred cccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEc---------CCCcchHHHhhcCCCCC------EEEEEC
Confidence 3578999999987776 7899999999865 47899999865 24999999987 79998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|.++.+..+++||||+|||||||+++++++.... .....+++|+||+|+.+ |++|.+||+++++.+..+++++
T Consensus 86 P~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 162 (232)
T cd06190 86 PYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTP 162 (232)
T ss_pred CcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEE
Confidence 99988876555679999999999999999999987521 11357899999999999 9999999999999888888999
Q ss_pred EEecCCC--------CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 347 AFSREGS--------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 347 a~Sr~~~--------~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++|+++. .++++++.+.+.... ...+..||+||| +.|++++.+.|.+.+
T Consensus 163 ~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp-~~m~~~v~~~l~~~g 219 (232)
T cd06190 163 AVSDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGP-PPMVDAVQRMLMIEG 219 (232)
T ss_pred EeCCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECC-HHHHHHHHHHHHHhC
Confidence 9987643 235666655432210 123579999999 899999999997763
No 33
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.96 E-value=8e-29 Score=241.45 Aligned_cols=184 Identities=21% Similarity=0.235 Sum_probs=146.7
Q ss_pred CCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeC
Q 014169 189 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 268 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~ 268 (429)
..+.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ |.+|.||+++++|+ .|.+.+|.
T Consensus 36 ~~~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~~-----------G~~S~~L~~l~~Gd------~v~v~gP~ 97 (289)
T PRK08345 36 FTFKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRRA-----------GRVTTVIHRLKEGD------IVGVRGPY 97 (289)
T ss_pred CCcCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEeC-----------ChHHHHHHhCCCCC------EEEEeCCC
Confidence 34679999999867666799999999864 47899999853 99999999999998 99999999
Q ss_pred CC-ccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEE
Q 014169 269 SN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 347 (429)
Q Consensus 269 g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a 347 (429)
|. |.++....+|+||||+|||||||+||+++++.. +....+++|+||+|+.+ |++|++||++|++...+++++.+
T Consensus 98 G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~---~~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~ 173 (289)
T PRK08345 98 GNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDN---RWKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQS 173 (289)
T ss_pred CCCCCcccccCceEEEEecccchhHHHHHHHHHHhc---CCCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEE
Confidence 96 766544457999999999999999999988762 11347899999999998 99999999999888888889999
Q ss_pred EecCCCC---------------ccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 348 FSREGSQ---------------KEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 348 ~Sr~~~~---------------k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+|+++.. ++++.+.+.+. ... .+..+|+||| +.|++++.+.|.+.+.
T Consensus 174 ~s~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP-~~m~~~v~~~L~~~Gv 236 (289)
T PRK08345 174 VTRDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGP-PVMYKFVFKELINRGY 236 (289)
T ss_pred ecCCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECC-HHHHHHHHHHHHHcCC
Confidence 9986432 12232222111 111 3468999999 8999999999977643
No 34
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.96 E-value=1.1e-28 Score=231.38 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=152.9
Q ss_pred CCCChHHHHHhhcCCCC--CceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEE
Q 014169 189 ATPPIGVFFAAVAPHLQ--PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 265 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~~--pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~ 265 (429)
..+.+|||+.+.+|... .|+|||+|.|.. .+.++|+|+.. ..|.+|+||.+ +++|+ .|.+.
T Consensus 22 ~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~i~ 85 (224)
T cd06187 22 LPFWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAV---------PGGRVSNALHDELKVGD------RVRLS 85 (224)
T ss_pred CCcCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeC---------CCCcchHHHhhcCccCC------EEEEe
Confidence 35678999999877543 799999999865 47899999864 24999999998 99998 99999
Q ss_pred EeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEE
Q 014169 266 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 345 (429)
Q Consensus 266 ~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~ 345 (429)
+|.|.|.++.+..+++||||+|||||||++|++++... + ...+++|+|++|+.+ |++|.++|+++++...+++++
T Consensus 86 gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~---~-~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 160 (224)
T cd06187 86 GPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRR---G-EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVV 160 (224)
T ss_pred CCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhc---C-CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEE
Confidence 99999888765568999999999999999999998752 2 457899999999999 999999999999888888888
Q ss_pred EEEecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 346 LAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 346 ~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
.++++++. .++|+++.+.+... -..++.||+||| +.|++++.+.|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp-~~~~~~v~~~l~~~G~ 214 (224)
T cd06187 161 PVVSHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGP-PAMVDATVDALLARGA 214 (224)
T ss_pred EEeCCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 88887543 45778776654321 014578999999 8999999999977543
No 35
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.96 E-value=1.1e-28 Score=232.41 Aligned_cols=182 Identities=25% Similarity=0.345 Sum_probs=151.4
Q ss_pred CCCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEE
Q 014169 189 ATPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 266 (429)
..+.+|||+.+.+|+. ..|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +++|+ .|.+.+
T Consensus 29 ~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~~l~~G~------~v~v~g 91 (228)
T cd06209 29 LAFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLL---------PGGAMSSYLRDRAQPGD------RLTLTG 91 (228)
T ss_pred CccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEc---------CCCcchhhHHhccCCCC------EEEEEC
Confidence 4568999999986765 4799999999864 7899999865 24999999999 99998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|.++.. .++++|||+|||||||++++++.... + ..++++|+||+|+.+ |++|.++|++|.+...+++++.
T Consensus 92 P~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 165 (228)
T cd06209 92 PLGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAED---G-SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRT 165 (228)
T ss_pred CcccceecCC-CCeEEEEEcccCHhHHHHHHHHHHhc---C-CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEE
Confidence 9998887644 47999999999999999999998762 2 457899999999999 9999999999998878888999
Q ss_pred EEecCCC---CccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 347 AFSREGS---QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 347 a~Sr~~~---~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++|++.. .++|+++.+.+.. +. .+..||+||| +.|++++++.|.+.+
T Consensus 166 ~~s~~~~~~~~~g~v~~~~~~~~------~~~~~~~v~icGp-~~m~~~~~~~l~~~G 216 (228)
T cd06209 166 VVADPDSWHPRKGYVTDHLEAED------LNDGDVDVYLCGP-PPMVDAVRSWLDEQG 216 (228)
T ss_pred EEcCCCccCCCcCCccHHHHHhh------ccCCCcEEEEeCC-HHHHHHHHHHHHHcC
Confidence 9998654 4567877665431 22 3568999999 899999999998654
No 36
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.96 E-value=9.4e-29 Score=245.72 Aligned_cols=187 Identities=14% Similarity=0.252 Sum_probs=149.1
Q ss_pred CCChHHHHHhhcCCC--CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEEE
Q 014169 190 TPPIGVFFAAVAPHL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~--~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~~ 266 (429)
.+.+|||+.+.++.- ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||+ ++++|+ .|.+.+
T Consensus 36 ~f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd------~v~v~g 99 (332)
T PRK10684 36 PYRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRI---------DDGVGSQWLTRDVKRGD------YLWLSD 99 (332)
T ss_pred CcCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEeC
Confidence 467999999976642 4699999999965 46799999865 2499999997 599998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|.++....+++||||||||||||+||+++.+.. ....+++|+||+|+.+ |++|.+||+++++....+++++
T Consensus 100 P~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~----~~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 174 (332)
T PRK10684 100 AMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKN----RPQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTL 174 (332)
T ss_pred CccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhc----CCCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEE
Confidence 9999998765568999999999999999999987652 1457899999999999 9999999999998877767777
Q ss_pred EEecCCCCccchhhhHHHhHHHHHHhhc--CCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 347 AFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 347 a~Sr~~~~k~yvq~~l~~~~~~l~~~l~--~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
..+++. .+++.++++.+. .+.+.+. .+..+|+||| ++|++++.+.|.+.+.
T Consensus 175 ~~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP-~~m~~~v~~~l~~~Gv 227 (332)
T PRK10684 175 VAENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGP-APYMDWVEQEVKALGV 227 (332)
T ss_pred EeccCC-CCCccccccCHH--HHHHhcccccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 776543 345555555432 1222222 2578999999 8999999999987643
No 37
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.96 E-value=2.7e-28 Score=248.47 Aligned_cols=209 Identities=18% Similarity=0.316 Sum_probs=160.2
Q ss_pred CCHHHHHHhCCC---CCCChHHHHHhhcCC--------------------------------CCCceeecCCCCCCCCCe
Q 014169 177 RSLLEVMAEFPS---ATPPIGVFFAAVAPH--------------------------------LQPRYYSISSSPRFAPDR 221 (429)
Q Consensus 177 ~~~~dvl~~f~~---~~~~~gq~l~~~~p~--------------------------------~~pR~YSIaSsp~~~~~~ 221 (429)
.++.++..+.+. ..+.+|||+.+.+|. ...|+|||+|+|.. .+.
T Consensus 142 ~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~-~~~ 220 (405)
T TIGR01941 142 TFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPAE-KGI 220 (405)
T ss_pred chhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCCC-CCe
Confidence 344455444442 356799999997653 24699999999965 478
Q ss_pred eEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHH
Q 014169 222 VHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERM 301 (429)
Q Consensus 222 i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~ 301 (429)
++|+|+++.+.....+...|.+|+||+++++|+ .|.+.+|.|.|.+.. ..+|+||||+|||||||+||+++.+
T Consensus 221 l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~i~gP~G~f~l~~-~~~~lvlIAgGtGIaP~lsmi~~~l 293 (405)
T TIGR01941 221 IKLNVRIATPPFINSDIPPGIMSSYIFSLKPGD------KVTISGPFGEFFAKD-TDAEMVFIGGGAGMAPMRSHIFDQL 293 (405)
T ss_pred EEEEEEEeccCcccCCCCCCcHHHHHhcCCCcC------EEEEEeccCCCeecC-CCCCEEEEecCcCcchHHHHHHHHH
Confidence 999999764322122345699999999999999 999999999998764 4689999999999999999999876
Q ss_pred HHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCC------CccchhhhHHHhHHHHHHhh-c
Q 014169 302 ALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQHKMMDKAAQLWSLL-S 374 (429)
Q Consensus 302 ~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~l-~ 374 (429)
... ....+++|+||+|+++ |++|.+||+++++.++++++++++|++.. .++++++.+.+.. +.+.. .
T Consensus 294 ~~~---~~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~ 367 (405)
T TIGR01941 294 KRL---KSKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYENY--LKDHDAP 367 (405)
T ss_pred hcC---CCCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHHHHhh--hcccCCC
Confidence 521 1356899999999999 99999999999988888889999987532 3467777664321 11111 1
Q ss_pred CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 375 KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 375 ~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
.++.||+||| ++|++++.+.|.+.+
T Consensus 368 ~~~~vylCGP-~~m~~av~~~L~~~G 392 (405)
T TIGR01941 368 EDCEFYMCGP-PMMNAAVIKMLEDLG 392 (405)
T ss_pred CCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 3578999999 899999999997754
No 38
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.95 E-value=2.4e-28 Score=230.72 Aligned_cols=186 Identities=22% Similarity=0.340 Sum_probs=151.2
Q ss_pred CCCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEE
Q 014169 189 ATPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 266 (429)
..+.+|||+.+.+|+. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|+||.+ +++|+ .|.+.+
T Consensus 28 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~g 91 (232)
T cd06212 28 IKFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKY---------PGGLFSSFLDDGLAVGD------PVTVTG 91 (232)
T ss_pred CCcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCchhhHHhhcCCCCC------EEEEEc
Confidence 3567999999986754 5899999999865 47899999865 24999999997 99998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|.++....+++||||+|||||||+++++++... + ..++++|+||+|+.+ +++|.++|+++++...+++++.
T Consensus 92 P~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~ 166 (232)
T cd06212 92 PYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAAS---G-SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIP 166 (232)
T ss_pred CcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhc---C-CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEE
Confidence 9999988755568999999999999999999998762 2 456899999999999 9999999999998877788888
Q ss_pred EEecCCC------CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 347 AFSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 347 a~Sr~~~------~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
++|++.. ..+++++.+.+.... + .+..||+||| +.|++++.+.|.+.+.
T Consensus 167 ~~s~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp-~~~~~~v~~~l~~~G~ 221 (232)
T cd06212 167 ALSESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGP-PPMIDAALPVLEMSGV 221 (232)
T ss_pred EECCCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 9998542 245666544332110 1 3578999999 8999999999887643
No 39
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.95 E-value=2.4e-28 Score=248.82 Aligned_cols=187 Identities=17% Similarity=0.249 Sum_probs=148.1
Q ss_pred CCCChHHHHHhhcC--C--C-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEE
Q 014169 189 ATPPIGVFFAAVAP--H--L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWA 262 (429)
Q Consensus 189 ~~~~~gq~l~~~~p--~--~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v 262 (429)
..+.+|||+.+.++ + . .+|+|||+|+|. .+.++|+|+.+ ..|.+|+||++ +++|+ .|
T Consensus 183 ~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd------~v 245 (399)
T PRK13289 183 ADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKRE---------AGGKVSNYLHDHVNVGD------VL 245 (399)
T ss_pred CCCCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEEC---------CCCeehHHHhhcCCCCC------EE
Confidence 35679999999854 2 1 249999999986 36899998854 24999999987 99999 99
Q ss_pred EEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCcc
Q 014169 263 PIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 342 (429)
Q Consensus 263 ~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~ 342 (429)
.+.+|.|.|.++.+..+|+||||+|||||||+||++++... ....+++||||+|+.+ |++|++||+++++.+.++
T Consensus 246 ~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~ 320 (399)
T PRK13289 246 ELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQ----QPKRPVHFIHAARNGG-VHAFRDEVEALAARHPNL 320 (399)
T ss_pred EEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhc----CCCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCc
Confidence 99999999999866678999999999999999999998752 2457999999999999 999999999999888778
Q ss_pred EEEEEEecCCCC----ccch-hhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 343 ELILAFSREGSQ----KEYV-QHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 343 ~l~~a~Sr~~~~----k~yv-q~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+++.++|++... ..|. .+++.+ +.+.+.+. .+..||+||| +.|++++.+.|.+.+
T Consensus 321 ~~~~~~s~~~~~~~~~~~~~~~g~i~~--~~l~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~G 381 (399)
T PRK13289 321 KAHTWYREPTEQDRAGEDFDSEGLMDL--EWLEAWLPDPDADFYFCGP-VPFMQFVAKQLLELG 381 (399)
T ss_pred EEEEEECCCccccccCCcccccCcccH--HHHHhhCCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 899999985431 1111 122221 12223332 4678999999 899999999987754
No 40
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.95 E-value=2.3e-28 Score=230.64 Aligned_cols=182 Identities=21% Similarity=0.352 Sum_probs=145.9
Q ss_pred CCChHHHHHhhcC--C-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 014169 190 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 265 (429)
.+.+|||+.+.++ + ..+|+|||+|.|. .+.++|+|+.+ ..|.+|+||+ ++++|+ .+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd------~v~i~ 89 (231)
T cd06191 27 GFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRV---------PGGRVSNYLREHIQPGM------TVEVM 89 (231)
T ss_pred CCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEEC---------CCCccchHHHhcCCCCC------EEEEe
Confidence 4679999998754 2 2479999999986 47899999865 2499999998 599998 99999
Q ss_pred EeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEE
Q 014169 266 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 345 (429)
Q Consensus 266 ~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~ 345 (429)
+|.|.|.++.....++||||+||||||++||+++.... ....+++|+||+|+.+ |++|.+||+++++...+++++
T Consensus 90 gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 164 (231)
T cd06191 90 GPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQT----APESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLL 164 (231)
T ss_pred CCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhc----CCCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEE
Confidence 99999998765568999999999999999999988752 2457899999999999 999999999999877788899
Q ss_pred EEEecCCCC------ccchhhhHHHhHHHHHHhhc--CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 346 LAFSREGSQ------KEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 346 ~a~Sr~~~~------k~yvq~~l~~~~~~l~~~l~--~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
.++||+... ++++.+.+.+ .++. .++.||+||| +.|++++.+.|.+.+
T Consensus 165 ~~~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp-~~mv~~~~~~l~~~G 220 (231)
T cd06191 165 CIFTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGP-AGMMDAVETALKELG 220 (231)
T ss_pred EEECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 999986432 2233322211 1222 2478999999 899999999997654
No 41
>PRK05713 hypothetical protein; Provisional
Probab=99.95 E-value=2.8e-28 Score=240.32 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=143.3
Q ss_pred CCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeC
Q 014169 189 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 268 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~ 268 (429)
..+.+|||+.+.+++...|+|||+|.|.. .+.++|+|+.+ ..|.+|.||.++++|+ .|.+.+|.
T Consensus 117 ~~~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd------~v~l~~p~ 180 (312)
T PRK05713 117 LRYRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCS---------RPGAFCDAARQLQVGD------LLRLGELR 180 (312)
T ss_pred CCcCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEc---------CCCccchhhhcCCCCC------EEEEccCC
Confidence 35689999999866666899999999865 47899999865 2599999998999998 99999999
Q ss_pred C-CccCCCC-CCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 269 S-NFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 269 g-~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
| .|.++.+ ..+|+||||||||||||+||+++++.. + ...+++|+||+|+.+ |++|.+||++|++...+++++.
T Consensus 181 gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~---~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~ 255 (312)
T PRK05713 181 GGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQ---G-HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVEL 255 (312)
T ss_pred CCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhc---C-CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEE
Confidence 7 5666644 468999999999999999999988752 2 457899999999999 9999999999998877777877
Q ss_pred EEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 347 AFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 347 a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+.++ ++++.+.+.. .......+|+||| ++|++++.+.|.+.+
T Consensus 256 ~~~~------~~~~~l~~~~-----~~~~~~~vyiCGp-~~mv~~~~~~L~~~G 297 (312)
T PRK05713 256 VTAA------QLPAALAELR-----LVSRQTMALLCGS-PASVERFARRLYLAG 297 (312)
T ss_pred EECc------chhhhhhhcc-----CCCCCeEEEEeCC-HHHHHHHHHHHHHcC
Confidence 7653 2333332110 0123468999999 899999999997654
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.95 E-value=1e-27 Score=224.86 Aligned_cols=187 Identities=20% Similarity=0.241 Sum_probs=148.0
Q ss_pred CCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEEe
Q 014169 189 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 267 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 267 (429)
..+.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+ ..|.+|.||++ +++|+ .|.+.+|
T Consensus 22 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~gP 85 (222)
T cd06194 22 LPYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRK---------PNGAFSGWLGEEARPGH------ALRLQGP 85 (222)
T ss_pred CCcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEec---------cCCccchHHHhccCCCC------EEEEecC
Confidence 45689999999877777899999999865 36899999865 24999999998 79998 9999999
Q ss_pred CCCccCCC-CCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 268 PSNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 268 ~g~F~lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
.|.|.+.. ...+++||||+|||||||++++++++.. ...++++|+||+|+.+ +++|.+||++|++....++++.
T Consensus 86 ~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (222)
T cd06194 86 FGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ----GHQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIP 160 (222)
T ss_pred cCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc----CCCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEE
Confidence 99877653 4467999999999999999999988752 2457899999999999 9999999999998777778888
Q ss_pred EEecCCCCcc-chhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 347 AFSREGSQKE-YVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 347 a~Sr~~~~k~-yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
++++++.... +..+.+.+. +. ....+..+|+||| +.|++++++.|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~vyicGp-~~m~~~~~~~L~~~Gv 211 (222)
T cd06194 161 CVSEGSQGDPRVRAGRIAAH---LP-PLTRDDVVYLCGA-PSMVNAVRRRAFLAGA 211 (222)
T ss_pred EEccCCCCCcccccchhhhh---hc-cccCCCEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 8888654321 111111111 11 1234678999999 8999999999987543
No 43
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=1.2e-27 Score=225.16 Aligned_cols=181 Identities=23% Similarity=0.338 Sum_probs=146.9
Q ss_pred CCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEEe
Q 014169 190 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 267 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p 267 (429)
.+.+|||+.+.+|.. ..|+|||+|+|.. .+.++|+|+.+ ..|.+|+||.+ +++|+ .|.+.+|
T Consensus 27 ~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~------~v~i~gP 90 (227)
T cd06213 27 AYKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKV---------PGGAFSGWLFGADRTGE------RLTVRGP 90 (227)
T ss_pred CcCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEEC---------CCCcchHHHHhcCCCCC------EEEEeCC
Confidence 467999999986654 4899999999865 47899999865 24999999966 99998 9999999
Q ss_pred CCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHc-CCccEEEE
Q 014169 268 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISELIL 346 (429)
Q Consensus 268 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~-~~~~~l~~ 346 (429)
.|.|.++. ..+++||||+|||||||+++++++... + ...+++|+||+|+.+ |++|.++|++++.. ..+++++.
T Consensus 91 ~G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~~---~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 164 (227)
T cd06213 91 FGDFWLRP-GDAPILCIAGGSGLAPILAILEQARAA---G-TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIP 164 (227)
T ss_pred CcceEeCC-CCCcEEEEecccchhHHHHHHHHHHhc---C-CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEE
Confidence 99998864 357999999999999999999998752 2 456799999999999 99999999999865 45677888
Q ss_pred EEecCCC------CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 347 AFSREGS------QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 347 a~Sr~~~------~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++|+++. ..+++++.+.+. +..+..||+||| +.|++++.+.|.+.+
T Consensus 165 ~~s~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp-~~~~~~~~~~l~~~G 216 (227)
T cd06213 165 VLSEEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGP-PAMIDAAIAVLRALG 216 (227)
T ss_pred EecCCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 8987642 234666655332 135679999999 899999999997754
No 44
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.95 E-value=1.7e-27 Score=227.85 Aligned_cols=184 Identities=23% Similarity=0.302 Sum_probs=148.6
Q ss_pred CCCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeC
Q 014169 189 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 268 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~ 268 (429)
.++.+|||+.+.+|....|+|||+|+|.. .+.++|+|+.. |.+|+||+++++|+ .+.+.+|.
T Consensus 26 ~~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~~-----------G~~S~~L~~l~~G~------~v~i~gP~ 87 (253)
T cd06221 26 FTFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRRV-----------GRVTEALHELKPGD------TVGLRGPF 87 (253)
T ss_pred CCcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEeC-----------ChhhHHHHcCCCCC------EEEEECCc
Confidence 45789999999877666799999999964 47899999843 88999999999998 99999999
Q ss_pred CC-ccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEE
Q 014169 269 SN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 347 (429)
Q Consensus 269 g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a 347 (429)
|. |.++....+++||||+||||||+++|+++++.. +...++++|+|++|+.+ |++|+++|++++.. .++++.++
T Consensus 88 G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~---~~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~ 162 (253)
T cd06221 88 GNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDN---REDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILT 162 (253)
T ss_pred CCCcccccccCCeEEEEccccchhHHHHHHHHHHhc---cccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEE
Confidence 96 666543568999999999999999999998862 11357899999999999 99999999999987 66778888
Q ss_pred EecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 348 FSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 348 ~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+|++.. ..+++++.+.+.. ....+..||+||| +.|++++.+.|.+.+.
T Consensus 163 ~s~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp-~~mv~~~~~~L~~~Gv 214 (253)
T cd06221 163 VDRAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGP-PIMMRFVAKELLKLGV 214 (253)
T ss_pred eCCCCCCccCCccccchhHHhcC-----CCcCCcEEEEECC-HHHHHHHHHHHHHcCC
Confidence 887643 3456665543321 0014678999999 8999999999987643
No 45
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.94 E-value=3.9e-27 Score=222.06 Aligned_cols=188 Identities=21% Similarity=0.303 Sum_probs=146.2
Q ss_pred CCCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEE
Q 014169 189 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPI 264 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v 264 (429)
..+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+... .|.+|.||+ ++++|+ .+.+
T Consensus 26 ~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~~~~G~------~v~i 89 (231)
T cd06215 26 FAYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDNLKVGD------ELWA 89 (231)
T ss_pred CCcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcC---------CCcchHHHHhcCCCCC------EEEE
Confidence 356899999987653 23699999999865 467999998652 489999997 599998 9999
Q ss_pred EEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEE
Q 014169 265 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 344 (429)
Q Consensus 265 ~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l 344 (429)
.+|.|.|.++.....++||||+|||||||++++++.... + ...+++|||++|+.+ |++|.++|+++++....+++
T Consensus 90 ~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 164 (231)
T cd06215 90 SGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDT---R-PDADIVFIHSARSPA-DIIFADELEELARRHPNFRL 164 (231)
T ss_pred EcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhc---C-CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEE
Confidence 999999988755468999999999999999999988752 2 456899999999999 99999999999987777788
Q ss_pred EEEEecCCCC-ccchhhhHHHhHHHHHHhhc--CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 345 ILAFSREGSQ-KEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 345 ~~a~Sr~~~~-k~yvq~~l~~~~~~l~~~l~--~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++++++++.. ..+.++++.+. .+.+.+. .+..||+||| +.|++++.+.|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~--~l~~~~~~~~~~~v~icGp-~~m~~~~~~~l~~~g 220 (231)
T cd06215 165 HLILEQPAPGAWGGYRGRLNAE--LLALLVPDLKERTVFVCGP-AGFMKAVKSLLAELG 220 (231)
T ss_pred EEEEccCCCCcccccCCcCCHH--HHHHhcCCccCCeEEEECC-HHHHHHHHHHHHHcC
Confidence 8888876542 22222333211 1222222 2468999999 899999999997654
No 46
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.94 E-value=3.7e-27 Score=224.60 Aligned_cols=182 Identities=19% Similarity=0.298 Sum_probs=146.7
Q ss_pred CCChHHHHHhhcC--C---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEE
Q 014169 190 TPPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 263 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~ 263 (429)
.+.+|||+.+.++ + ...|+|||+|.|.. +.++|+|+.+ ..|.+|+||++ +++|+ .+.
T Consensus 36 ~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~ 98 (247)
T cd06184 36 PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKRE---------PGGLVSNYLHDNVKVGD------VLE 98 (247)
T ss_pred CCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEE
Confidence 4678999998864 2 35799999999864 4788888754 24999999998 99998 999
Q ss_pred EEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccE
Q 014169 264 IFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 343 (429)
Q Consensus 264 v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~ 343 (429)
|.+|.|.|.++.+..+++||||+|||||||+++++++... ....+++|+||+|+++ +++|.++|+++++.+.+++
T Consensus 99 i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~----~~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~ 173 (247)
T cd06184 99 VSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE----GPGRPVTFIHAARNSA-VHAFRDELEELAARLPNLK 173 (247)
T ss_pred EEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc----CCCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeE
Confidence 9999999998864568999999999999999999998762 2457899999999999 8999999999998877788
Q ss_pred EEEEEecCCCC--------ccchhhhHHHhHHHHHH-hhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 344 LILAFSREGSQ--------KEYVQHKMMDKAAQLWS-LLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 344 l~~a~Sr~~~~--------k~yvq~~l~~~~~~l~~-~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++.++|++... .++++.. .+.+ ....+..||+||| +.|++++.+.|.+.+
T Consensus 174 ~~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp-~~m~~~v~~~l~~~G 232 (247)
T cd06184 174 LHVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGP-VPFMQAVREGLKALG 232 (247)
T ss_pred EEEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 99999986432 2333321 1222 1235689999999 899999999997754
No 47
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=4.2e-27 Score=223.74 Aligned_cols=185 Identities=22% Similarity=0.365 Sum_probs=148.1
Q ss_pred CCChHHHHHhhcC--C-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEE
Q 014169 190 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 265 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~ 265 (429)
.+.+|||+.+.++ + ..+|+|||+|.|....+.++|+|+.+ .+|.+|.||++ +++|+ .|.+.
T Consensus 45 ~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd------~v~i~ 109 (243)
T cd06216 45 GHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGD------VVELS 109 (243)
T ss_pred CcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCC------EEEEE
Confidence 4679999999864 2 34799999999861247899999865 24999999986 99998 99999
Q ss_pred EeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEE
Q 014169 266 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 345 (429)
Q Consensus 266 ~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~ 345 (429)
+|.|.|.++.+..+++||||+||||||++|++++.... + ...+++|+||+|+.+ |.+|.++|+++++.+.+++++
T Consensus 110 gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~---~-~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~ 184 (243)
T cd06216 110 QPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLAR---G-PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLH 184 (243)
T ss_pred CCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhc---C-CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEE
Confidence 99999999876568999999999999999999998752 2 457899999999999 999999999999777777888
Q ss_pred EEEecCCCCccchhhhHHHhHHHHHHhhc--CCcEEEEeCCCchhHHHHHHHHHHHHHH
Q 014169 346 LAFSREGSQKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIVQE 402 (429)
Q Consensus 346 ~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~--~~~~vyvCGp~~~M~~~v~~~L~~i~~~ 402 (429)
..+|++ ...+++.... +.+... .+..+|+||| +.|++++.+.|.+.+..
T Consensus 185 ~~~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp-~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 185 LLYTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGP-PGFLDAAEELLEAAGLA 235 (243)
T ss_pred EEEcCC-ccCCCCCHHH------HHHhccCcccCeEEEECC-HHHHHHHHHHHHHCCCc
Confidence 888876 2345543321 111121 3469999999 89999999999876543
No 48
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.94 E-value=1.6e-26 Score=221.26 Aligned_cols=181 Identities=19% Similarity=0.286 Sum_probs=142.9
Q ss_pred CCChHHHHHhhcCCC---CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 014169 190 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 265 (429)
.+.+|||+.+.++.- ..|.|||+|+|.. ++.+.|+|++.. .|.+|+||+ ++++|| +|.+.
T Consensus 34 ~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~---------~G~~S~~Lh~~lk~Gd------~l~v~ 97 (266)
T COG1018 34 DFEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRED---------GGGGSNWLHDHLKVGD------TLEVS 97 (266)
T ss_pred ccCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeC---------CCcccHHHHhcCCCCC------EEEEe
Confidence 478999999987743 6899999999976 468999998762 399999999 599999 99999
Q ss_pred EeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccE-E
Q 014169 266 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE-L 344 (429)
Q Consensus 266 ~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~-l 344 (429)
.|.|.|.++.....+++|||+|||||||+||++..... + . .+++|+|++|+.+ ++.|++| +.++++.+... +
T Consensus 98 ~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~---~-~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~ 170 (266)
T COG1018 98 APAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDR---G-P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLL 170 (266)
T ss_pred cCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHh---C-C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeE
Confidence 99999999876677999999999999999999998763 2 4 8899999999999 9999999 88888766533 3
Q ss_pred EEEEecCCCCccchh-hhHHHhHHHHHHhhcCC-cEEEEeCCCchhHHHHHHHHHHHHHH
Q 014169 345 ILAFSREGSQKEYVQ-HKMMDKAAQLWSLLSKE-GYLYVCGDAKGMARDVHRTLHTIVQE 402 (429)
Q Consensus 345 ~~a~Sr~~~~k~yvq-~~l~~~~~~l~~~l~~~-~~vyvCGp~~~M~~~v~~~L~~i~~~ 402 (429)
...+++.. ..+|+. .++. ....+. ..+|+||| .+|+++|...|.++...
T Consensus 171 ~~~~~~~~-~~g~~~~~~l~-------~~~~~~~r~~y~CGp-~~fm~av~~~l~~~g~~ 221 (266)
T COG1018 171 GLYTERGK-LQGRIDVSRLL-------SAAPDGGREVYLCGP-GPFMQAVRLALEALGVP 221 (266)
T ss_pred EEEEecCC-ccccccHHHHh-------ccCCCCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 33333221 223322 2221 112233 89999999 79999999999887654
No 49
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.94 E-value=1e-26 Score=223.62 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=140.4
Q ss_pred CCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCC
Q 014169 190 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 269 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 269 (429)
.+.+|||+.+.+|...+|+|||++.+ .+.++|+|+.+ |.+|+||+++++|+ .|.+.+|.|
T Consensus 32 ~~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~~-----------G~~S~~L~~l~~Gd------~v~v~gP~G 91 (263)
T PRK08221 32 PVKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRRV-----------GKVTDEIFNLKEGD------KLFLRGPYG 91 (263)
T ss_pred CCCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEeC-----------CchhhHHHhCCCCC------EEEEECCCC
Confidence 46799999998787667999999975 36899999743 99999999999998 999999999
Q ss_pred C-ccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEE
Q 014169 270 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 348 (429)
Q Consensus 270 ~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~ 348 (429)
. |.++....+|+||||+|||||||+|++++++.. +...++++|+||+|+.+ |++|.+||++|++.. .+++++
T Consensus 92 ~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~---~~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~ 164 (263)
T PRK08221 92 NGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYEN---PQEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTL 164 (263)
T ss_pred CCcccCccCCccEEEEcccccHHHHHHHHHHHHhC---cccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEe
Confidence 6 887765568999999999999999999988652 22346899999999999 999999999998753 245556
Q ss_pred ecCCC----CccchhhhHHHhHHHHHHhhc--CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 349 SREGS----QKEYVQHKMMDKAAQLWSLLS--KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 349 Sr~~~----~k~yvq~~l~~~~~~l~~~l~--~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+++.. ..+++++.+.+. .+. .+..+|+||| +.|++++.+.|.+.+
T Consensus 165 ~~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp-~~mv~~~~~~L~~~G 215 (263)
T PRK08221 165 DEGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGP-PIMMKFTVLEFLKRG 215 (263)
T ss_pred cCCCCCCccCccccChhhHhc------cCCCcCCeEEEEECC-HHHHHHHHHHHHHcC
Confidence 65433 235555433221 011 3578999999 899999999997654
No 50
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.94 E-value=4.3e-27 Score=219.93 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=140.6
Q ss_pred CCCChHHHHHhhcCC----CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEE
Q 014169 189 ATPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 264 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v 264 (429)
..+.+|||+.+.++. ...|+|||+|+|.. +.++|+|+++. ..|.+|.||.++++|+ .+.+
T Consensus 26 ~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~--------~~g~~s~~l~~l~~G~------~v~i 89 (218)
T cd06196 26 YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYP--------DHDGVTEQLGRLQPGD------TLLI 89 (218)
T ss_pred CCCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcC--------CCCcHhHHHHhCCCCC------EEEE
Confidence 457899999987553 25799999999863 78999998652 1277899999999998 9999
Q ss_pred EEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEE
Q 014169 265 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 344 (429)
Q Consensus 265 ~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l 344 (429)
.+|.|.|.++ .|+||||+|||||||+|+++++... + ...+++|+||+|+.+ |++|.+||++|.. +++
T Consensus 90 ~gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~ 156 (218)
T cd06196 90 EDPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAAK---G-KLEGNTLIFANKTEK-DIILKDELEKMLG----LKF 156 (218)
T ss_pred ECCccceEec----CceEEEecCCCcChHHHHHHHHHhC---C-CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceE
Confidence 9999998763 5899999999999999999998762 2 446799999999998 9999999999852 357
Q ss_pred EEEEecCCCCccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 345 ILAFSREGSQKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 345 ~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+.++|+++. .+|.++++.+ +.+.+++. ..+.||+||| +.|++++.+.|.+.+.
T Consensus 157 ~~~~s~~~~-~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp-~~m~~~~~~~l~~~G~ 210 (218)
T cd06196 157 INVVTDEKD-PGYAHGRIDK--AFLKQHVTDFNQHFYVCGP-PPMEEAINGALKELGV 210 (218)
T ss_pred EEEEcCCCC-CCeeeeEECH--HHHHHhcCCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 778888654 2344444432 12223332 3478999999 8999999999977643
No 51
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.94 E-value=6.4e-27 Score=221.14 Aligned_cols=185 Identities=21% Similarity=0.306 Sum_probs=145.9
Q ss_pred CCChHHHHHhhcC--CC--CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEE
Q 014169 190 TPPIGVFFAAVAP--HL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 264 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~~--~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v 264 (429)
.+.+|||+.+.+| .. ..|+|||+|.|.. .+.++|+|+.+ ..|.+|.||.+ +++|+ .|.+
T Consensus 30 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd------~v~i 93 (235)
T cd06217 30 PFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRV---------PGGEVSPYLHDEVKVGD------LLEV 93 (235)
T ss_pred CcCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCC------EEEE
Confidence 5678999999865 22 2499999999865 46899999865 24899999987 89998 9999
Q ss_pred EEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEE
Q 014169 265 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 344 (429)
Q Consensus 265 ~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l 344 (429)
.+|.|.|.++....++++|||+||||||+++++++.... + ...+++|+||+|+.+ |.+|.+||.+++++..++++
T Consensus 94 ~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~---~-~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~ 168 (235)
T cd06217 94 RGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDL---G-WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHV 168 (235)
T ss_pred eCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhc---C-CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEE
Confidence 999999988654467999999999999999999998752 2 457899999999999 99999999999987777788
Q ss_pred EEEEecCCC-----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 345 ILAFSREGS-----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 345 ~~a~Sr~~~-----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+.++|++.. .++++...+.+ .+.. ...+..||+||| ++|++++.+.|.+.+
T Consensus 169 ~~~~s~~~~~~~~~~~g~~~~~~l~---~~~~-~~~~~~v~icGp-~~m~~~v~~~l~~~G 224 (235)
T cd06217 169 TEALTRAAPADWLGPAGRITADLIA---ELVP-PLAGRRVYVCGP-PAFVEAATRLLLELG 224 (235)
T ss_pred EEEeCCCCCCCcCCcCcEeCHHHHH---hhCC-CccCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 888998622 23444332211 1100 014579999999 899999999998764
No 52
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.94 E-value=1.2e-26 Score=232.61 Aligned_cols=189 Identities=20% Similarity=0.330 Sum_probs=145.5
Q ss_pred CCChHHHHHhhcC--C-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 014169 190 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 265 (429)
.+.+|||+.+.++ + ...|+|||+|+|. ++.++|+|+.+. .|.+|+||+ ++++|+ .|.+.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~Gd------~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPGD------TLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCCC------EEEEe
Confidence 5679999999864 2 2469999999984 478999998762 489999997 599998 99999
Q ss_pred EeCCCccCCCCC--CCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCC-cc
Q 014169 266 IRPSNFKLPANP--SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-IS 342 (429)
Q Consensus 266 ~p~g~F~lp~~~--~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~-~~ 342 (429)
+|.|.|.++... .+++||||+|||||||+||+++++.. + ...+++|+||+|+.+ |++|.+||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E-PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 999999886542 37999999999999999999988762 1 457899999999999 9999999999987655 47
Q ss_pred EEEEEEecCCCCccchhhhHHH-hHH-HHHHhh--cCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 343 ELILAFSREGSQKEYVQHKMMD-KAA-QLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 343 ~l~~a~Sr~~~~k~yvq~~l~~-~~~-~l~~~l--~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+++.++|++.....+..+++.. ... .+.++. .....||+||| +.|++++++.|.+.+.
T Consensus 170 ~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp-~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 170 HLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGP-QAMVDDAEQALTGLGV 231 (352)
T ss_pred EEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 7888999865432222233211 111 111122 13468999999 8999999999987654
No 53
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.94 E-value=8.4e-27 Score=217.73 Aligned_cols=179 Identities=21% Similarity=0.304 Sum_probs=141.9
Q ss_pred CCCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEE
Q 014169 189 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPI 264 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v 264 (429)
..+.+|||+.+.++. ...|+|||+|.|.. .+.++|+|+.+ |.+|.+|. ++++|+ .|.+
T Consensus 21 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~-----------G~~t~~l~~~l~~G~------~v~i 82 (216)
T cd06198 21 LGHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKAL-----------GDYTRRLAERLKPGT------RVTV 82 (216)
T ss_pred CCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeC-----------ChHHHHHHHhCCCCC------EEEE
Confidence 356799999998664 46899999999865 46899999853 88999999 799998 9999
Q ss_pred EEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEE
Q 014169 265 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 344 (429)
Q Consensus 265 ~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l 344 (429)
.+|.|.|.++.. .++++|||+||||||++++++++... + ..++++|+|++|+.+ |++|.++|+++...+ ++++
T Consensus 83 ~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~ 155 (216)
T cd06198 83 EGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAAR---G-DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVL 155 (216)
T ss_pred ECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhc---C-CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEE
Confidence 999999998765 68999999999999999999988762 1 357899999999999 999999999998877 5567
Q ss_pred EEEEecCCCCccchhhhHHHhHHHHHHhh--cCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 345 ILAFSREGSQKEYVQHKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 345 ~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l--~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+++.+++.. .......+ .... ..+..||+||| +.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp-~~m~~~v~~~l~~~Gv 205 (216)
T cd06198 156 HVIDSPSDG-RLTLEQLV-------RALVPDLADADVWFCGP-PGMADALEKGLRALGV 205 (216)
T ss_pred EEEeCCCCc-ccchhhhh-------hhcCCCcCCCeEEEECc-HHHHHHHHHHHHHcCC
Confidence 766554332 11111111 0111 24578999999 8999999999987543
No 54
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.94 E-value=8.5e-27 Score=229.61 Aligned_cols=186 Identities=12% Similarity=0.136 Sum_probs=140.6
Q ss_pred CCCChHHHHHhhcC-C-----CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE
Q 014169 189 ATPPIGVFFAAVAP-H-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA 262 (429)
Q Consensus 189 ~~~~~gq~l~~~~p-~-----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v 262 (429)
..+.+|||+.+.++ + ...|+|||+|+|.. ++.++|+|+++ ..|.+|+||+++++|| .|
T Consensus 80 ~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~---------~~G~~S~~L~~lk~Gd------~v 143 (325)
T PTZ00274 80 FNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRK---------KDGLMTNHLFGMHVGD------KL 143 (325)
T ss_pred cCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEc---------CCCcccHHHhcCCCCC------EE
Confidence 45789999997544 2 13699999999965 57899999976 2599999999999999 99
Q ss_pred EEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhc--CCCCCCeEEEEecccCCcccccHHHHHHHHHcCC
Q 014169 263 PIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV 340 (429)
Q Consensus 263 ~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~--~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~ 340 (429)
.+.+|.+.|.++.+..+++||||||||||||+||+++++..... +....+++|+||+|+.+ |++|.+||++|++...
T Consensus 144 ~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~ 222 (325)
T PTZ00274 144 LFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYS 222 (325)
T ss_pred EEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCC
Confidence 99999777766555557999999999999999999998763210 11235899999999999 9999999999998765
Q ss_pred -ccEEEEEEecCCC------CccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHH
Q 014169 341 -ISELILAFSREGS------QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRT 395 (429)
Q Consensus 341 -~~~l~~a~Sr~~~------~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~ 395 (429)
+++++.++|++.. ..++|.+.+... +..... ....+|+||| ++|+++|.+.
T Consensus 223 ~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGP-p~Mm~av~~~ 281 (325)
T PTZ00274 223 NRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGP-DQLLNHVAGT 281 (325)
T ss_pred CcEEEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCC-HHHHHHhcCC
Confidence 5788888886421 235554433111 100011 1257999999 8999999665
No 55
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.94 E-value=2.3e-26 Score=217.05 Aligned_cols=185 Identities=18% Similarity=0.258 Sum_probs=147.0
Q ss_pred CCCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 014169 189 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 265 (429)
..+.+|||+.+.+|. ...|+|||+|.+.. .+.++|+|+.+. .|.+|.||+++++|+ .|.+.
T Consensus 27 ~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G~------~v~i~ 90 (234)
T cd06183 27 LGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPGD------TVEIR 90 (234)
T ss_pred CCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCCC------EEEEE
Confidence 456899999998664 46899999999864 467999998652 499999999999998 99999
Q ss_pred EeCCCccCCCCCC-CCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHc-CCccE
Q 014169 266 IRPSNFKLPANPS-VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISE 343 (429)
Q Consensus 266 ~p~g~F~lp~~~~-~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~-~~~~~ 343 (429)
+|.|.|.+..+.. .++||||+||||||+++++++..... ....+++|+|++|+.+ +.+|.+||+++.+. ...++
T Consensus 91 gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~---~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~ 166 (234)
T cd06183 91 GPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP---EDKTKISLLYANRTEE-DILLREELDELAKKHPDRFK 166 (234)
T ss_pred CCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc---CcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEE
Confidence 9999998876544 79999999999999999999987521 1357899999999999 99999999999886 35567
Q ss_pred EEEEEecCCCC----ccchhhhHHHhHHHHHHhhc----CCcEEEEeCCCchhHH-HHHHHHHHHH
Q 014169 344 LILAFSREGSQ----KEYVQHKMMDKAAQLWSLLS----KEGYLYVCGDAKGMAR-DVHRTLHTIV 400 (429)
Q Consensus 344 l~~a~Sr~~~~----k~yvq~~l~~~~~~l~~~l~----~~~~vyvCGp~~~M~~-~v~~~L~~i~ 400 (429)
+++++++.+.. .+++++.+.+ ..+. .+..+|+||| +.|++ ++++.|.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~~~~~icGp-~~~~~~~~~~~l~~~G 225 (234)
T cd06183 167 VHYVLSRPPEGWKGGVGFITKEMIK------EHLPPPPSEDTLVLVCGP-PPMIEGAVKGLLKELG 225 (234)
T ss_pred EEEEEcCCCcCCccccceECHHHHH------HhCCCCCCCCeEEEEECC-HHHHHHHHHHHHHHcC
Confidence 88888875432 3555543321 1122 3568999999 89999 9999987643
No 56
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.94 E-value=3e-26 Score=217.47 Aligned_cols=188 Identities=22% Similarity=0.351 Sum_probs=144.7
Q ss_pred CCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh-hcCCCCCCCCccEEEEE
Q 014169 190 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 190 ~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~-~l~~G~~~~~~~~v~v~ 265 (429)
.+.+|||+.+.+|. ..+|+|||+|.|.. +.++|+|+.+ ..|.+|.||. ++++|+ .+.+.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~G~------~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKAGD------TLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCCCC------EEEEe
Confidence 56899999998652 35799999998864 3799999865 2499999998 599998 99999
Q ss_pred EeCCCccCCCC-CCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCC-ccE
Q 014169 266 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISE 343 (429)
Q Consensus 266 ~p~g~F~lp~~-~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~-~~~ 343 (429)
+|.|.|.++.+ ..+++||||+|||||||+++++++... ...++++|+|++|+.+ |++|.++|+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAR----EPASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhc----CCCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 99999988865 468999999999999999999998752 1357899999999999 9999999999987654 667
Q ss_pred EEEEEecCCCCccchhhhHHHh-HHHHH-Hhh--cCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 344 LILAFSREGSQKEYVQHKMMDK-AAQLW-SLL--SKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 344 l~~a~Sr~~~~k~yvq~~l~~~-~~~l~-~~l--~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+..++|+++....+..+.+.+. ..... +.. .+...||+||| +.|++++.+.|.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp-~~mv~~v~~~l~~~G 229 (241)
T cd06214 170 VIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGP-EPMMDAVEAALLELG 229 (241)
T ss_pred EEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 7778887654321122222211 11111 111 23578999999 899999999987754
No 57
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.94 E-value=4.7e-26 Score=217.05 Aligned_cols=175 Identities=19% Similarity=0.292 Sum_probs=140.1
Q ss_pred CCCChHHHHHhhcCC----CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEE
Q 014169 189 ATPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 264 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~----~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v 264 (429)
..+.+|||+.+.+|. ...|+|||+|.|.. .+.++|+|+.. |.+|+||.++++|+ .|.+
T Consensus 23 ~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~Gd------~v~i 84 (246)
T cd06218 23 AAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKAGD------ELDV 84 (246)
T ss_pred ccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCCCC------EEEE
Confidence 356789999998664 35799999998854 47899999864 88899999999998 9999
Q ss_pred EEeCC-CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccE
Q 014169 265 FIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 343 (429)
Q Consensus 265 ~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~ 343 (429)
.+|.| .|.++. ...++||||+|||||||+|+++++.. ...+++|+|++|+.+ |.+|.++|++|.. .
T Consensus 85 ~gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~ 151 (246)
T cd06218 85 LGPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAE------RGIKVTVLLGFRSAD-DLFLVEEFEALGA-----E 151 (246)
T ss_pred EecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHh------cCCceEEEEEccchh-hhhhHHHHHhhCC-----c
Confidence 99999 577764 46899999999999999999998765 236899999999999 9999999999853 2
Q ss_pred EEEEEecCC--CCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 344 LILAFSREG--SQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 344 l~~a~Sr~~--~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+.. +++++ ..++|+++.+.+.... ..+..||+||| +.|++++++.|.+.+.
T Consensus 152 ~~~-~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp-~~mv~~~~~~L~~~Gv 204 (246)
T cd06218 152 VYV-ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP-EPMLKAVAELAAERGV 204 (246)
T ss_pred EEE-EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 232 23332 2457888876554321 14679999999 8999999999987654
No 58
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.94 E-value=3.7e-26 Score=219.56 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=139.4
Q ss_pred CCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCC
Q 014169 190 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 269 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 269 (429)
.+.+|||+.+.+|...+|+|||+|.+ .+.++|+|+.. |.+|++|+++++|+ .|.+.+|.|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~~-----------G~~S~~L~~l~~Gd------~v~i~gP~G 89 (261)
T TIGR02911 30 PVKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRRV-----------GKVTDEVFTLKEGD------NLFLRGPYG 89 (261)
T ss_pred CCCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEeC-----------chhhHHHHcCCCCC------EEEEecCCC
Confidence 46899999998787778999999853 47899999853 99999999999998 999999999
Q ss_pred C-ccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEE
Q 014169 270 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 348 (429)
Q Consensus 270 ~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~ 348 (429)
. |.++....+|++|||+|||||||+|++++++.. +....+++|+||+|+.+ |++|.+||++|+... .+...+
T Consensus 90 ~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~---~~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~ 162 (261)
T TIGR02911 90 NGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKN---PKEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTL 162 (261)
T ss_pred CCcccCccCCceEEEEecccCcHHHHHHHHHHHhC---cccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEE
Confidence 6 877755568999999999999999999987652 22346899999999999 999999999998753 244445
Q ss_pred ecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 349 SREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 349 Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+++.. ..+++.+.+.+.. +.+ ..+..||+||| +.|++++.+.|.+.+
T Consensus 163 ~~~~~~~~~~~g~v~~~l~~~~--~~~--~~~~~v~lCGp-~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 163 DEAEEDYKGNIGLVTKYIPELT--LKD--IEEVQAIVVGP-PIMMKFTVQELLKKG 213 (261)
T ss_pred cCCCCCCcCCeeccCHhHHhcc--CCC--ccceEEEEECC-HHHHHHHHHHHHHcC
Confidence 54322 2345554443210 000 13568999999 899999999988764
No 59
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.93 E-value=3e-26 Score=224.28 Aligned_cols=196 Identities=17% Similarity=0.192 Sum_probs=142.2
Q ss_pred CCCChHHHHHhhcCC-------CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccE
Q 014169 189 ATPPIGVFFAAVAPH-------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSW 261 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~-------~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~ 261 (429)
..+.+|||+.+.++. ...|+||++|+|.. ++.++|+|+.+..........+|.+|+||.++++|| .
T Consensus 62 ~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~ 134 (300)
T PTZ00319 62 LGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGD------K 134 (300)
T ss_pred CCCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCC------E
Confidence 346799999997552 24699999999864 578999998762110000113599999999899999 9
Q ss_pred EEEEEeCCCccCCCC---------------CCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCccc
Q 014169 262 APIFIRPSNFKLPAN---------------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDF 326 (429)
Q Consensus 262 v~v~~p~g~F~lp~~---------------~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ 326 (429)
|.+.+|.|.|.+..+ ...+++|||+|||||||++|+++.+.. ..+..+++|+||+|+.+ |+
T Consensus 135 v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~---~~~~~~i~liyg~r~~~-dl 210 (300)
T PTZ00319 135 IEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKN---KEDRTKVFLVYANQTED-DI 210 (300)
T ss_pred EEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhC---CCCCceEEEEEecCCHH-Hh
Confidence 999999999866432 124899999999999999999988752 11345899999999999 99
Q ss_pred ccHHHHHHHHHcCCccEEEEEEecCCC-----CccchhhhHHHhHHHHHHhhc------CCcEEEEeCCCchhHH-HHHH
Q 014169 327 IYEDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMMDKAAQLWSLLS------KEGYLYVCGDAKGMAR-DVHR 394 (429)
Q Consensus 327 ly~~eL~~~~~~~~~~~l~~a~Sr~~~-----~k~yvq~~l~~~~~~l~~~l~------~~~~vyvCGp~~~M~~-~v~~ 394 (429)
+|.++|++++ ...+++++.+++++.. ..++|...+.+.. + .... .+..||+||| ++|++ ++.+
T Consensus 211 ~~~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~vyiCGp-~~mv~~~~~~ 285 (300)
T PTZ00319 211 LLRKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVMALMCGP-PPMLQMAVKP 285 (300)
T ss_pred hHHHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeEEEEECC-HHHHHHHHHH
Confidence 9999999965 4556788888887432 2456655332211 0 0011 2468999999 89998 5677
Q ss_pred HHHHHH
Q 014169 395 TLHTIV 400 (429)
Q Consensus 395 ~L~~i~ 400 (429)
.|.+++
T Consensus 286 ~L~~~G 291 (300)
T PTZ00319 286 NLEKIG 291 (300)
T ss_pred HHHHcC
Confidence 776654
No 60
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.93 E-value=1.3e-25 Score=208.90 Aligned_cols=175 Identities=20% Similarity=0.249 Sum_probs=137.2
Q ss_pred CCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEEeC
Q 014169 190 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 268 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~p~ 268 (429)
.+.+|||+.+.+|....|+|||+|.|.+ .+.++|+|+.... .+.+|.||++ +++|+ .|.+.+|.
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~~--------g~~~s~~l~~~~~~Gd------~v~i~gP~ 89 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREPA--------SRGGSRYMHELLRVGD------ELEVSAPR 89 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEeccC--------CCchHHHHHhcCCCCC------EEEEcCCc
Confidence 5789999999977767899999999865 4789999986521 1347999976 89998 99999999
Q ss_pred CCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEE
Q 014169 269 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 348 (429)
Q Consensus 269 g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~ 348 (429)
|.|.++.+ .+++||||+||||||+++++++... ...+++|+||+|+.+ |.+|.++|++++ .. .+.+.+
T Consensus 90 g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~------~~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~ 157 (211)
T cd06185 90 NLFPLDEA-ARRHLLIAGGIGITPILSMARALAA------RGADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHF 157 (211)
T ss_pred cCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHh------CCCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEE
Confidence 99988654 5799999999999999999998764 236899999999998 999999999987 23 244455
Q ss_pred ecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 349 SREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 349 Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+++. ....+.+.+.+ ..++..||+||| +.|++++.+.|.+.+.
T Consensus 158 ~~~~-~~~~~~~~~~~--------~~~~~~vyicGp-~~m~~~~~~~l~~~gv 200 (211)
T cd06185 158 DDEG-GRLDLAALLAA--------PPAGTHVYVCGP-EGMMDAVRAAAAALGW 200 (211)
T ss_pred CCCC-CccCHHHHhcc--------CCCCCEEEEECC-HHHHHHHHHHHHHcCC
Confidence 5543 22333333321 124679999999 8999999999987643
No 61
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.92 E-value=6.3e-25 Score=209.69 Aligned_cols=178 Identities=21% Similarity=0.322 Sum_probs=148.5
Q ss_pred CCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCC
Q 014169 190 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 269 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 269 (429)
.+.+|||+.+.+|....|+|||+|.+.. .+.++|.|++.. .|.+|.+++.+++|| .+.+.||.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~~---------~G~~T~~i~~~k~gd------~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVYE---------VGKVTKYIFGLKEGD------KIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEEe---------CChHHHHHhhccCCC------EEEEEcCCC
Confidence 4789999999988889999999999975 577788887653 499999999999998 899999999
Q ss_pred CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEe
Q 014169 270 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 349 (429)
Q Consensus 270 ~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~S 349 (429)
++.+.++..+|+++||||||+||+++++++... ++ ...+++++||+|++. |+++.+||++++.+ +++.+.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~---~~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKE---KG-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHh---cC-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 777766667789999999999999999999876 34 558999999999999 99999999999875 3555555
Q ss_pred cCCC--Cccch-hhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 350 REGS--QKEYV-QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 350 r~~~--~k~yv-q~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+++ .+++| ++.+.+... .+...+|+||| +.|++++.+.+.+..
T Consensus 170 -~~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp-~~M~~~v~~~~~~~g 215 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELLD------LEVDDVYICGP-PAMVKAVREKLKEYG 215 (252)
T ss_pred -CCCCccCcceeHHHHhhhcc------ccCCEEEEECC-HHHHHHHHHHHHhcC
Confidence 333 57788 666644321 14689999999 999999999998865
No 62
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.92 E-value=5.7e-25 Score=206.12 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=124.1
Q ss_pred CCCChHHHHHhhcCCC-------------------CCceeecCCCCCCC--CCeeEEEEEEEEccCCCCCcccCcccHHh
Q 014169 189 ATPPIGVFFAAVAPHL-------------------QPRYYSISSSPRFA--PDRVHVTCALVYGPTPTGRIHKGVCSTWM 247 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~-------------------~pR~YSIaSsp~~~--~~~i~l~v~~v~~~~~~g~~~~G~~S~~L 247 (429)
..+.+|||+.+.+|.. ..|+|||||+|..+ .+.++|+|+.+ |.+|+||
T Consensus 24 ~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L 92 (220)
T cd06197 24 GKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFL 92 (220)
T ss_pred cccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHH
Confidence 4567899999976642 24999999999753 26888888754 9999999
Q ss_pred hhcCC-----CCCCCCccEEEEEEeCCCccCCC---CCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEec
Q 014169 248 KNAIP-----LEGNGDCSWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGC 319 (429)
Q Consensus 248 ~~l~~-----G~~~~~~~~v~v~~p~g~F~lp~---~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~ 319 (429)
.++.. |+ .+.+.+|.|.|.++. +..+++||||||||||||++++++++.. +....+++|+||+
T Consensus 93 ~~~~~~~~~~G~------~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~---~~~~~~v~l~~~~ 163 (220)
T cd06197 93 FQVARRLREQGL------EVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSS---RNTTWDITLLWSL 163 (220)
T ss_pred HHhhhcccCCCc------eEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhc---ccCCCcEEEEEEe
Confidence 98533 77 999999999999875 3457999999999999999999988752 1135789999999
Q ss_pred ccCCcccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHH
Q 014169 320 RNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 398 (429)
Q Consensus 320 R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~ 398 (429)
|+.+ |++|.+||+++... ...+... + ...||+||| ++|++++.+.+.+
T Consensus 164 r~~~-~~~~~~el~~~~~~--~~~~~~~-~--------------------------~~~v~~CGP-~~m~~~~~~~~~~ 211 (220)
T cd06197 164 REDD-LPLVMDTLVRFPGL--PVSTTLF-I--------------------------TSEVYLCGP-PALEKAVLEWLEG 211 (220)
T ss_pred cchh-hHHHHHHHHhccCC--ceEEEEE-E--------------------------eccEEEECc-HHHHHHHHHHhhh
Confidence 9999 99999999887531 1111111 1 117999999 8999999888775
No 63
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.92 E-value=6.5e-25 Score=213.14 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=134.4
Q ss_pred CCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEEe
Q 014169 190 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 267 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 267 (429)
.+.+|||+.+.++.. .+|+|||+|++.. ++.++|+|+.+ |.+|.+|+++++|+ .| .+.+|
T Consensus 27 ~~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~~-----------G~~T~~L~~l~~Gd------~v~~i~GP 88 (281)
T PRK06222 27 KAKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQAV-----------GKSTRKLAELKEGD------SILDVVGP 88 (281)
T ss_pred cCCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEeC-----------CcHHHHHhcCCCCC------EEeeEEcC
Confidence 467999999986543 4689999998754 47899999865 99999999999998 99 79999
Q ss_pred CCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEE
Q 014169 268 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 347 (429)
Q Consensus 268 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a 347 (429)
.|.|..... .+++||||||+||||++++++++.. ...+++|+||+|+.+ |++|.+||++++.. +++
T Consensus 89 ~G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~------~~~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v- 154 (281)
T PRK06222 89 LGKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKE------AGNKVITIIGARNKD-LLILEDEMKAVSDE-----LYV- 154 (281)
T ss_pred CCCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHH------CCCeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-
Confidence 997655433 5799999999999999999998764 235799999999999 99999999988742 222
Q ss_pred EecCCC--CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 348 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 348 ~Sr~~~--~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
.+.+++ .+++|++.+.+.... ......||+||| ++|++++.+.+.+..
T Consensus 155 ~~~d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (281)
T PRK06222 155 TTDDGSYGRKGFVTDVLKELLES----GKKVDRVVAIGP-VIMMKFVAELTKPYG 204 (281)
T ss_pred EcCCCCcCcccchHHHHHHHhhc----CCCCcEEEEECC-HHHHHHHHHHHHhcC
Confidence 233332 356777655432211 111457999999 899999999987654
No 64
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.92 E-value=9.7e-25 Score=206.35 Aligned_cols=166 Identities=22% Similarity=0.301 Sum_probs=132.5
Q ss_pred CCChHHHHHhhcCCCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCC
Q 014169 190 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 269 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g 269 (429)
.+.+|||+.+.+|....|+|||+|+| +.++|+|+.. |.+|+||+++++|+ .+.+.+|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~~-----------G~~s~~L~~l~~Gd------~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKKV-----------GEATSALHDLKEGD------KLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEec-----------ChHHHHHHhcCCCC------EEEEECcCC
Confidence 67899999998676667999999997 5799998753 89999999999998 999999999
Q ss_pred C-ccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEE
Q 014169 270 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 348 (429)
Q Consensus 270 ~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~ 348 (429)
. |.++ .+|+||||+|||||||++++++... . .+++|+||+|+++ |++|.+||+++ . ++.++.
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~------~-~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKK------A-ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHh------c-CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 5799999999999999999998765 2 7899999999999 99999999982 1 222222
Q ss_pred ecCCC--CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 349 SREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 349 Sr~~~--~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
+ +.+ ..+++++.+.+.. ......||+||| ++|++++.+.|.+.+.
T Consensus 145 ~-~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp-~~m~~~~~~~L~~~g~ 191 (233)
T cd06220 145 D-DGSYGFKGFVTDLLKELD------LEEYDAIYVCGP-EIMMYKVLEILDERGV 191 (233)
T ss_pred e-CCCCcccceehHHHhhhc------ccCCCEEEEECC-HHHHHHHHHHHHhcCC
Confidence 2 221 3466666543321 123468999999 8999999999987654
No 65
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.92 E-value=9.2e-25 Score=208.42 Aligned_cols=173 Identities=17% Similarity=0.200 Sum_probs=133.6
Q ss_pred CCChHHHHHhhcCC-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEEe
Q 014169 190 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 267 (429)
Q Consensus 190 ~~~~gq~l~~~~p~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 267 (429)
.+.+|||+.+.++. ...|+|||+|+|.. .+.++|+|+.+ |..|.+|.++++|+ .+ .+.+|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~~-----------G~~t~~l~~l~~G~------~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQVV-----------GKSTRELATLEEGD------KIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEeC-----------CchHHHHHhcCCCC------EeeeeecC
Confidence 56799999997443 35799999998754 47899999853 88999999999998 88 69999
Q ss_pred CCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEE
Q 014169 268 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 347 (429)
Q Consensus 268 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a 347 (429)
.|.|.+..+ .+++||||+||||||+++++++... ...+++|+||+|+.+ |++|.+||++++++ ++.+
T Consensus 88 ~G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~------~~~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKE------AGNRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHH------cCCeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 998765533 5799999999999999999998765 236899999999999 99999999999643 2222
Q ss_pred EecCCC--CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHH
Q 014169 348 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 399 (429)
Q Consensus 348 ~Sr~~~--~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i 399 (429)
+++.+ ..+++++.+.+.... ......||+||| ++|++++.+.|.+.
T Consensus 155 -~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGP-~~m~~~~~~~l~~~ 202 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKELIES----GEKVDLVIAIGP-PIMMKAVSELTRPY 202 (248)
T ss_pred -eCCCCCCccccchHHHHHHHhc----cCCccEEEEECC-HHHHHHHHHHHHHc
Confidence 34332 345676655432211 123457999999 89999999988764
No 66
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.92 E-value=9.9e-25 Score=207.54 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=133.8
Q ss_pred CCChHHHHHhhcC---CCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEE
Q 014169 190 TPPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 190 ~~~~gq~l~~~~p---~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 266 (429)
.+.+|||+.+.+| ....|+|||+|.|.. .+.++|+|+.. |.+|+||.++++|+ .+.+.+
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~-----------G~~t~~l~~~~~G~------~l~i~g 85 (243)
T cd06192 24 LFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIR-----------GPKTKLIAELKPGE------KLDVMG 85 (243)
T ss_pred cCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEc-----------CchHHHHHhCCCCC------EEEEEc
Confidence 5678999999864 346799999999864 47899999853 88999999999998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|.+..+..++++|||+|||||||++++++... ...+++|+||+|+.+ |.+|.+||+++. . ...
T Consensus 86 P~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~ 152 (243)
T cd06192 86 PLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAA------NGNKVTVLAGAKKAK-EEFLDEYFELPA----D--VEI 152 (243)
T ss_pred cCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHH------CCCeEEEEEecCcHH-HHHHHHHHHhhc----C--eEE
Confidence 999766554446799999999999999999998775 236899999999999 999999998872 1 223
Q ss_pred EEecCCC--CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 347 AFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 347 a~Sr~~~--~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
..++++. ..+++++... .+ . ......||+||| +.|++++++.|.+.+
T Consensus 153 ~~~~~~~~~~~g~v~~~~~----~~-~-~~~~~~v~icGp-~~mv~~~~~~l~~~g 201 (243)
T cd06192 153 WTTDDGELGLEGKVTDSDK----PI-P-LEDVDRIIVAGS-DIMMKAVVEALDEWL 201 (243)
T ss_pred EEecCCCCccceeechhhh----hh-h-cccCCEEEEECC-HHHHHHHHHHHHhhc
Confidence 3344432 2345544311 00 0 123468999999 899999999998875
No 67
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.92 E-value=1.2e-24 Score=207.78 Aligned_cols=169 Identities=21% Similarity=0.292 Sum_probs=135.9
Q ss_pred CCCChHHHHHhhcCCC---CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 014169 189 ATPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 265 (429)
..+.+|||+.+.+|.. .+|+|||+|+| .+.++|+|+.+ |.+|+||.++++|+ +|.+.
T Consensus 30 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~-----------G~~t~~l~~l~~G~------~v~i~ 89 (250)
T PRK00054 30 FDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKV-----------GEGTKKLSKLKEGD------ELDIR 89 (250)
T ss_pred cCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEc-----------ChHHHHHhcCCCCC------EEEEE
Confidence 4568999999986654 68999999998 37899999854 89999999999998 99999
Q ss_pred EeCCC-ccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEE
Q 014169 266 IRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 344 (429)
Q Consensus 266 ~p~g~-F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l 344 (429)
+|.|. |.++. ..+++||||+||||||+++++++... ...+++|+|++|+.+ |++|.+||+++.. +
T Consensus 90 gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~~~------~ 155 (250)
T PRK00054 90 GPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKK------KGVEVTTVLGARTKD-EVIFEEEFAKVGD------V 155 (250)
T ss_pred cccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHH------cCCcEEEEEEcCCHH-HhhhHHHHHhcCC------E
Confidence 99995 88864 45799999999999999999999865 235799999999999 9999999998432 2
Q ss_pred EEEEecCCC--CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 345 ILAFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 345 ~~a~Sr~~~--~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
++. +++++ .++|+++.+.+.. .....||+||| +.|++++.+.|.+.+
T Consensus 156 ~~~-~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp-~~m~~~v~~~l~~~G 204 (250)
T PRK00054 156 YVT-TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGP-EIMMKKVVEILKEKK 204 (250)
T ss_pred EEE-ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCC-HHHHHHHHHHHHHcC
Confidence 222 23322 4568887664432 23568999999 899999999998854
No 68
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.92 E-value=1.5e-24 Score=206.66 Aligned_cols=185 Identities=15% Similarity=0.200 Sum_probs=151.0
Q ss_pred CCCChHHHHHhhcCCC---CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 014169 189 ATPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 265 (429)
..+|.||++.+.+|.- ..|+||..|++.. .+.++|.|++. .+|.+|.||.+++.|| +|.++
T Consensus 80 l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd------~ve~r 143 (286)
T KOG0534|consen 80 LGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVY---------PKGKMSQHLDSLKIGD------TVEFR 143 (286)
T ss_pred cCcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEec---------cCCcccHHHhcCCCCC------EEEEe
Confidence 3568999999886643 4799999999976 68999999865 2499999999999999 99999
Q ss_pred EeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCC-ccEE
Q 014169 266 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISEL 344 (429)
Q Consensus 266 ~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~-~~~l 344 (429)
||.|.|.++....+.+.|||||||||||++++++++... .+..+++|+|++++++ |+++++||+.++.+.+ .+++
T Consensus 144 GP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~---~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~ 219 (286)
T KOG0534|consen 144 GPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP---EDTTKISLLYANKTED-DILLREELEELASKYPERFKV 219 (286)
T ss_pred cCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC---CCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEE
Confidence 999999888777889999999999999999999998732 2467899999999999 9999999999999987 8899
Q ss_pred EEEEecCCC----CccchhhhHHHhHHHHHHhhc---C-CcEEEEeCCCchhHHH-HHHHHHHHH
Q 014169 345 ILAFSREGS----QKEYVQHKMMDKAAQLWSLLS---K-EGYLYVCGDAKGMARD-VHRTLHTIV 400 (429)
Q Consensus 345 ~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~---~-~~~vyvCGp~~~M~~~-v~~~L~~i~ 400 (429)
+.+++++.. .++||...+ +.+.+. + ...++|||| ++|.+. +...|.+++
T Consensus 220 ~y~v~~~~~~w~~~~g~It~~~------i~~~l~~~~~~~~~~liCGP-p~m~~~~~~~~le~Lg 277 (286)
T KOG0534|consen 220 WYVVDQPPEIWDGSVGFITKDL------IKEHLPPPKEGETLVLICGP-PPMINGAAQGNLEKLG 277 (286)
T ss_pred EEEEcCCcccccCccCccCHHH------HHhhCCCCCCCCeEEEEECC-HHHHhHHHHHHHHhcC
Confidence 999998874 456664332 222232 2 478999999 899974 555555443
No 69
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=208.64 Aligned_cols=177 Identities=17% Similarity=0.242 Sum_probs=142.4
Q ss_pred ChHHHHHhhcCCC----CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEEEE
Q 014169 192 PIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 192 ~~gq~l~~~~p~~----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v~~ 266 (429)
.+|||.-+-++.. .|+|||||++... .+++|.|+.. |..|.-|.+ +++|+ ++.|.+
T Consensus 244 qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~L-----------GD~Tk~l~dnLk~G~------k~~vdG 304 (438)
T COG4097 244 QAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKAL-----------GDFTKTLKDNLKVGT------KLEVDG 304 (438)
T ss_pred cCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehhh-----------hhhhHHHHHhccCCc------eEEEec
Confidence 6899877765543 5999999999764 4799999875 999999998 99998 999999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|+|.|....... .-|+||||+|||||+|+++..... ....++.|||++|+.+ +.+|.+||++++++.+++.++.
T Consensus 305 PYG~F~~~~g~~-~QVWIAGGIGITPFis~l~~l~~~----~s~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHi 378 (438)
T COG4097 305 PYGKFDFERGLN-TQVWIAGGIGITPFISMLFTLAER----KSDPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHI 378 (438)
T ss_pred CcceeecccCCc-ccEEEecCcCcchHHHHHHhhccc----ccCCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEE
Confidence 999999875433 399999999999999999988763 2568999999999999 9999999999999888877776
Q ss_pred EEecCCCCccch-hhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHH
Q 014169 347 AFSREGSQKEYV-QHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQE 402 (429)
Q Consensus 347 a~Sr~~~~k~yv-q~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~ 402 (429)
. |++.++|+ |+.+....+. +....||+||| ++|++++++.|++....
T Consensus 379 i---DSs~~g~l~~e~ler~~~~-----~~~~sv~fCGP-~~m~dsL~r~l~~~~~~ 426 (438)
T COG4097 379 I---DSSKDGYLDQEDLERYPDR-----PRTRSVFFCGP-IKMMDSLRRDLKKQNVP 426 (438)
T ss_pred e---cCCCCCccCHHHhhccccc-----cCcceEEEEcC-HHHHHHHHHHHHHcCCC
Confidence 3 33356777 3333332211 12348999999 89999999999886543
No 70
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.91 E-value=3.2e-24 Score=198.66 Aligned_cols=187 Identities=19% Similarity=0.335 Sum_probs=151.7
Q ss_pred CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCccCCCCCCCCEEEE
Q 014169 205 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 284 (429)
Q Consensus 205 ~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~pii~I 284 (429)
.-|.||+||-|.+ .+.|.|-|++..-+-.....+.|.||+|+.+|++|| +|.|+||+|.|... +.++++|||
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGD------KvtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGD------KVTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCC------eEEEeccchhhhhc-cCCCceEEE
Confidence 4699999999987 578899998875443344677899999999999999 99999999987766 457899999
Q ss_pred ccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCCC------ccch
Q 014169 285 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ------KEYV 358 (429)
Q Consensus 285 a~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~~------k~yv 358 (429)
+||.|.||+||-+-..+.+.. ..+++.+.||+|+.. +.+|++++++++++.++|+.|+++|.+..+ .+++
T Consensus 282 gGGAGmapmRSHIfDqL~rlh---SkRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFi 357 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLH---SKRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFI 357 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhc---ccceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHH
Confidence 999999999998877766432 568999999999999 999999999999999999999999987552 2344
Q ss_pred hhhHHHhHHHHHHhh-cCCcEEEEeCCCchhHHHHHHHHHHHHHHccCC
Q 014169 359 QHKMMDKAAQLWSLL-SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENV 406 (429)
Q Consensus 359 q~~l~~~~~~l~~~l-~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~ 406 (429)
...+.+. .+.++- .++..+|+||| +-|..+|.+.|.+++++..++
T Consensus 358 hnv~~en--~Lk~h~aPEDceyYmCGP-p~mNasvikmL~dlGVE~enI 403 (410)
T COG2871 358 HNVLYEN--YLKDHEAPEDCEYYMCGP-PLMNASVIKMLKDLGVERENI 403 (410)
T ss_pred HHHHHhh--hhhcCCCchheeEEeeCc-chhhHHHHHHHHhcCccccce
Confidence 4444332 222222 24678999999 899999999999998876543
No 71
>PRK05802 hypothetical protein; Provisional
Probab=99.90 E-value=3.8e-24 Score=210.82 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=130.4
Q ss_pred CChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEe
Q 014169 191 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 267 (429)
Q Consensus 191 ~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p 267 (429)
+.||||+.+.++. ...|+|||+|+|.. .+.++|+|+++ |..|++|+++++|+ .|.|.+|
T Consensus 95 ~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~-----------G~~T~~L~~l~~Gd------~l~v~GP 156 (320)
T PRK05802 95 VYPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIR-----------GVKTKKIAKLNKGD------EILLRGP 156 (320)
T ss_pred CCCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEec-----------ChhHHHHhcCCCCC------EEEEeCC
Confidence 4799999998543 23599999999865 57899999865 99999999999998 9999999
Q ss_pred CC--CccCC---CCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCcc
Q 014169 268 PS--NFKLP---ANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 342 (429)
Q Consensus 268 ~g--~F~lp---~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~ 342 (429)
+| .|.++ ....+++||||||+||||++++++++.. + ..+++|+||+|+++ |++|.++|+++..+...+
T Consensus 157 ~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~---~---~~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~ 229 (320)
T PRK05802 157 YWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS---N---GNKIIVIIDKGPFK-NNFIKEYLELYNIEIIEL 229 (320)
T ss_pred CCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH---c---CCcEEEEEeCCCHH-HHHHHHHHHHhhCceEEE
Confidence 96 36653 2335689999999999999999998875 1 24899999999999 999999999986542221
Q ss_pred EEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHH
Q 014169 343 ELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 399 (429)
Q Consensus 343 ~l~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i 399 (429)
.+..++. .++++++.+.+. +...||+||| +.|+++|.+.|.++
T Consensus 230 ----~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP-~~M~k~v~~~l~~~ 276 (320)
T PRK05802 230 ----NLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGS-DILHYKIIEYLDKL 276 (320)
T ss_pred ----EecccCCCCccccchHHHHhcCC---------CCCEEEEECC-HHHHHHHHHHHhhh
Confidence 1112321 123444433211 2368999999 89999999999875
No 72
>PLN02252 nitrate reductase [NADPH]
Probab=99.90 E-value=1.1e-23 Score=230.45 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=145.0
Q ss_pred CCChHHHHHhhcC--C-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEE
Q 014169 190 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 266 (429)
.+++|||+.+.++ + ...|+||++|.+.. .+.++|+|+++...........|.+|+||.++++|+ .|.|.+
T Consensus 664 gl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd------~V~V~G 736 (888)
T PLN02252 664 GLPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGD------TIDVKG 736 (888)
T ss_pred CCCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCC------EEEEec
Confidence 4578999888753 2 24799999999865 578999999762110001113599999999999998 999999
Q ss_pred eCCCccC--------CCC--CCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHH
Q 014169 267 RPSNFKL--------PAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 336 (429)
Q Consensus 267 p~g~F~l--------p~~--~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~ 336 (429)
|.|.|.+ +.. ..++++|||||||||||+++|++++.. .....+++||||+|+.+ |++|++||++++
T Consensus 737 P~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~---~~d~t~i~Liyg~Rt~~-Dil~~eEL~~la 812 (888)
T PLN02252 737 PLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD---PEDKTEMSLVYANRTED-DILLREELDRWA 812 (888)
T ss_pred CccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc---cCCCCcEEEEEEECCHH-HhhHHHHHHHHH
Confidence 9997643 322 247999999999999999999998752 12457899999999999 999999999999
Q ss_pred HcC-CccEEEEEEecCC-C----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHH-HHHHHHHHH
Q 014169 337 EEG-VISELILAFSREG-S----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARD-VHRTLHTIV 400 (429)
Q Consensus 337 ~~~-~~~~l~~a~Sr~~-~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~-v~~~L~~i~ 400 (429)
+.. ..++++.++|++. + .+++|.+.+.+.. + .....+..+|+||| ++|++. +...|.+++
T Consensus 813 ~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~--l-~~~~~~~~vyiCGP-p~Mi~~av~~~L~~~G 879 (888)
T PLN02252 813 AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREH--L-PEGGDETLALMCGP-PPMIEFACQPNLEKMG 879 (888)
T ss_pred HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHh--c-ccCCCCeEEEEeCC-HHHHHHHHHHHHHHcC
Confidence 876 5678899999753 2 3456655332211 0 00123567999999 899984 777887654
No 73
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.88 E-value=9.5e-23 Score=231.18 Aligned_cols=189 Identities=16% Similarity=0.255 Sum_probs=144.2
Q ss_pred CCChHHHHHhhcC--C-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEE
Q 014169 190 TPPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 266 (429)
Q Consensus 190 ~~~~gq~l~~~~p--~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~ 266 (429)
.+.+|||+.+.++ + ...|+|||+|.|.. .+.++|+|+. ..|.+|.||+++++|+ .|.+.+
T Consensus 947 ~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~----------~~G~~S~~L~~l~~Gd------~v~v~g 1009 (1167)
T PTZ00306 947 GLTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARG----------DKGTLKEWISALRPGD------SVEMKA 1009 (1167)
T ss_pred CCCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEc----------CCChhHHHHhhCCCCC------EEEEeC
Confidence 4689999999854 1 23599999999964 5788888862 1499999999999999 999998
Q ss_pred eCC----------CccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHH
Q 014169 267 RPS----------NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFE 336 (429)
Q Consensus 267 p~g----------~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~ 336 (429)
|.| .|.++....+|+||||+|||||||+||+++++... ......+++||||+|+.+ |++|++||++|+
T Consensus 1010 p~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~-~~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~ 1087 (1167)
T PTZ00306 1010 CGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKP-YVDSIESIRLIYAAEDVS-ELTYRELLESYR 1087 (1167)
T ss_pred CcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCc-ccCCCceEEEEEEeCCHH-HhhHHHHHHHHH
Confidence 655 45566555689999999999999999999887521 001246899999999999 999999999999
Q ss_pred HcCC-ccEEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 337 EEGV-ISELILAFSREGS----QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 337 ~~~~-~~~l~~a~Sr~~~----~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
++.+ .+++++++|++++ ..++|++.+.+.. ......+..||+||| ++|++++.+.|.+.+.
T Consensus 1088 ~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~---l~~~~~~~~vyiCGP-~~mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1088 KENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSA---LQPPSKDLLVAICGP-PVMQRAVKADLLALGY 1153 (1167)
T ss_pred HHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHh---cCCCCCCeEEEEeCC-HHHHHHHHHHHHHcCC
Confidence 8765 5789999997644 2466654332211 000113568999999 8999999999987643
No 74
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.86 E-value=1e-21 Score=214.85 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=136.7
Q ss_pred CCChHHHHHhhcCCC-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEE-EEEEe
Q 014169 190 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 267 (429)
Q Consensus 190 ~~~~gq~l~~~~p~~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v-~v~~p 267 (429)
.+.+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+++ |.+|.+|+++++|+ .+ .+.+|
T Consensus 27 ~~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~Gd------~v~~v~GP 88 (752)
T PRK12778 27 SRKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNEGD------YITDVVGP 88 (752)
T ss_pred cCCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCCCC------EeCeEeCC
Confidence 457999999985543 4689999999864 57899999876 99999999999998 99 79999
Q ss_pred CCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEE
Q 014169 268 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 347 (429)
Q Consensus 268 ~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a 347 (429)
.|.|..... .++++|||||+|||||+++++++.. ...+++||||+|+.+ |++|.+||++|+.. +++
T Consensus 89 ~G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~------~~~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~- 154 (752)
T PRK12778 89 LGNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKA------AGNRVITILGGRSKE-LIILEDEMRESSDE-----VII- 154 (752)
T ss_pred CCCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHH------CCCeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEE-
Confidence 997776533 4799999999999999999998775 225899999999999 99999999998642 222
Q ss_pred EecCCC--CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 348 FSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 348 ~Sr~~~--~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
.+.+++ .+++|++.+.+.... ..+...||+||| ++|++++.+.+.+.+
T Consensus 155 ~t~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP-~~M~~~v~~~l~~~g 204 (752)
T PRK12778 155 MTDDGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGP-AIMMKFVCLLTKKYG 204 (752)
T ss_pred EECCCCCCCcccHHHHHHHHhhc----CCCCCEEEEECC-HHHHHHHHHHHHHcC
Confidence 234433 467887766443211 112357999999 899999999887653
No 75
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.85 E-value=2.4e-21 Score=183.38 Aligned_cols=173 Identities=16% Similarity=0.165 Sum_probs=124.3
Q ss_pred CCChHHHHHhhcCC----------------------CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHh
Q 014169 190 TPPIGVFFAAVAPH----------------------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM 247 (429)
Q Consensus 190 ~~~~gq~l~~~~p~----------------------~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L 247 (429)
.+.+|||+.+.+|. ...|+|||+|.+.. .+.++|.|+... ..|.+|+||
T Consensus 26 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l 96 (235)
T cd06193 26 SDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWA 96 (235)
T ss_pred CCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHH
Confidence 35689999998653 24699999998754 578999987541 128999999
Q ss_pred hhcCCCCCCCCccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccc
Q 014169 248 KNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFI 327 (429)
Q Consensus 248 ~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~l 327 (429)
.++++|+ .|.+.+|.|.|.++. ..+++||||+||||||+++|+++... ..+++++|++|+.+ |.+
T Consensus 97 ~~l~~Gd------~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~-------~~~~~~~~~~~~~~-d~~ 161 (235)
T cd06193 97 ASAQPGD------TLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA-------DARGTALIEVPDAA-DEQ 161 (235)
T ss_pred hhCCCCC------EEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC-------CCeEEEEEEECCHH-Hcc
Confidence 9999999 999999999998864 35799999999999999999997642 26899999999987 655
Q ss_pred cHHHHHHHHHcCCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHH
Q 014169 328 YEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 399 (429)
Q Consensus 328 y~~eL~~~~~~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i 399 (429)
+.+++ ..++++.+.+++.. .+.....+.. .+ ........+|+||| ++|++++++.|.+.
T Consensus 162 ~l~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~---~~-~~~~~~~~vyicGp-~~mv~~v~~~l~~~ 220 (235)
T cd06193 162 PLPAP-------AGVEVTWLHRGGAE-AGELALLAVR---AL-APPAGDGYVWIAGE-AGAVRALRRHLREE 220 (235)
T ss_pred ccCCC-------CCcEEEEEeCCCCC-cchhHHHHHh---cc-cCCCCCeEEEEEcc-HHHHHHHHHHHHHc
Confidence 43332 13355555544332 2111110000 00 00123578999999 89999999988763
No 76
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.84 E-value=8.5e-21 Score=176.29 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=124.3
Q ss_pred CCCChHHHHHhhcCCC----CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcC------CCCCCCC
Q 014169 189 ATPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI------PLEGNGD 258 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~------~G~~~~~ 258 (429)
..+.+|||+.+.+|.. ..|+|||+|+|....+.++|+|+.. .|..|.++..+. .|+
T Consensus 23 ~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~---- 88 (210)
T cd06186 23 FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSL---- 88 (210)
T ss_pred CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCcee----
Confidence 4568999999987764 6899999999864347899999854 388888887776 665
Q ss_pred ccEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcc-cccHHHHHHHHH
Q 014169 259 CSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMD-FIYEDELNNFEE 337 (429)
Q Consensus 259 ~~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d-~ly~~eL~~~~~ 337 (429)
.+.+.+|+|.|..+.....++|||||||||||++++++++.....+.....++.|+|++|+.+ | ..|.++|.+..+
T Consensus 89 --~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~~~~ 165 (210)
T cd06186 89 --KVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRAAQE 165 (210)
T ss_pred --EEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHhhhh
Confidence 899999999876443446799999999999999999999876321101357899999999998 7 579999975111
Q ss_pred cCCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHH
Q 014169 338 EGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHT 398 (429)
Q Consensus 338 ~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~ 398 (429)
-....++++.+++ ||+||| .+|.++++....+
T Consensus 166 ~~~~~~~~i~~T~----------------------------v~~CGp-~~~~~~~~~~~~~ 197 (210)
T cd06186 166 LEVDGEIEIYVTR----------------------------VVVCGP-PGLVDDVRNAVAK 197 (210)
T ss_pred ccCCceEEEEEee----------------------------EEEECc-hhhccHHHHHHhh
Confidence 1111123444443 999999 7999999988776
No 77
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.84 E-value=2.4e-20 Score=206.61 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=134.2
Q ss_pred CCChHHHHHhhcC-CCCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEE-EEEe
Q 014169 190 TPPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP-IFIR 267 (429)
Q Consensus 190 ~~~~gq~l~~~~p-~~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~-v~~p 267 (429)
.+.+|||+.+..+ ....|+|||+|.|.. .+.++|+|+.+ |..|.+|.++++|+ .+. |.+|
T Consensus 676 ~~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd------~l~~I~GP 737 (944)
T PRK12779 676 SAQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQGM-----------GTSSLEINRMAIGD------AFSGIAGP 737 (944)
T ss_pred cCCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEee-----------ccHHHHHhcCCCcC------EEeeeecC
Confidence 4679999999843 234599999998754 47899999865 88899999999998 894 9999
Q ss_pred CCCcc-CCC-CCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHH---HHHHHcCC-c
Q 014169 268 PSNFK-LPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDEL---NNFEEEGV-I 341 (429)
Q Consensus 268 ~g~F~-lp~-~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL---~~~~~~~~-~ 341 (429)
.|.|. ++. ...+++||||||+||||+++++++... ...+++|+||+|+.+ |++|.+++ ++|++... .
T Consensus 738 lG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~------~g~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~ 810 (944)
T PRK12779 738 LGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR------LGNHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQ 810 (944)
T ss_pred CCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH------CCCCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCC
Confidence 99654 443 224699999999999999999998765 235899999999998 88887664 55665433 3
Q ss_pred cEEEEEEecCCC--CccchhhhHHHhHHHHHHhhc-CCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 342 SELILAFSREGS--QKEYVQHKMMDKAAQLWSLLS-KEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 342 ~~l~~a~Sr~~~--~k~yvq~~l~~~~~~l~~~l~-~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+.++++ +.+++ .+++|++.+.+........-. ....||+||| ++|++++.+.|.+.+
T Consensus 811 ~~v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP-~~Mmkav~~~l~~~G 870 (944)
T PRK12779 811 LDVIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGP-PLMMRAVSDLTKPYG 870 (944)
T ss_pred eEEEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECC-HHHHHHHHHHHHHcC
Confidence 344433 44432 457787766443211000000 1357999999 899999999887654
No 78
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=200.44 Aligned_cols=173 Identities=15% Similarity=0.169 Sum_probs=131.8
Q ss_pred CCChHHHHHhhcCC-CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHh-hhcCCCCCCCCccEE-EEEE
Q 014169 190 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWA-PIFI 266 (429)
Q Consensus 190 ~~~~gq~l~~~~p~-~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L-~~l~~G~~~~~~~~v-~v~~ 266 (429)
.+.||||+.+.++. ...|+|||++.+.. .+.++|.|+++ |..|.|| .++++|| .+ .+.+
T Consensus 27 ~~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd------~l~~v~G 88 (1006)
T PRK12775 27 SAEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQAL-----------GKTTREMMTKFKAGD------TFEDFVG 88 (1006)
T ss_pred CCCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEec-----------CcHHHHHHhcCCCCC------EEeeeec
Confidence 45799999998543 34699999998754 57888888865 9999999 4799998 88 7999
Q ss_pred eCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEE
Q 014169 267 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 346 (429)
Q Consensus 267 p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~ 346 (429)
|.|.|..... .+++||||||+||||++++++++.. ...+++++||+|+.+ +++|.+||+++... +++
T Consensus 89 PlG~~~~~~~-~~~vllVaGGiGIAPl~s~~r~l~~------~g~~v~li~g~R~~~-~l~~~del~~~~~~-----~~v 155 (1006)
T PRK12775 89 PLGLPQHIDK-AGHVVLVGGGLGVAPVYPQLRAFKE------AGARTTGIIGFRNKD-LVFWEDKFGKYCDD-----LIV 155 (1006)
T ss_pred CCCCCCCCCC-CCeEEEEEEhHHHHHHHHHHHHHHh------CCCcEEEEEeCCChH-HcccHHHHHhhcCc-----EEE
Confidence 9996544322 4689999999999999999998764 235799999999998 99999999887532 222
Q ss_pred EEecCCC--CccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 347 AFSREGS--QKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 347 a~Sr~~~--~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
.+.+++ .+++|++.+.+.... .....||+||| +.|++.+.+.+++..
T Consensus 156 -~tddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP-~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 156 -CTDDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGP-LPMMNACVETTRPFG 204 (1006)
T ss_pred -EECCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECC-HHHHHHHHHHHHHCC
Confidence 234433 457787766543210 12358999999 899999999887653
No 79
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.79 E-value=4.2e-19 Score=147.32 Aligned_cols=104 Identities=23% Similarity=0.439 Sum_probs=81.4
Q ss_pred EEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCc-cEEEEEEecCCC----Cccc
Q 014169 283 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFSREGS----QKEY 357 (429)
Q Consensus 283 ~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~-~~l~~a~Sr~~~----~k~y 357 (429)
|||||||||||+||++++... ....+++|+||+|+.+ |++|.++|+++++.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER----NDNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH----TCTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHh----CCCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 799999999999999999874 2568999999999999 99999999999988765 334444 33332 3688
Q ss_pred hhhhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHH
Q 014169 358 VQHKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHR 394 (429)
Q Consensus 358 vq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~ 394 (429)
|++.+.+.... ......+..||+||| ++|+++|++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp-~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGP-PPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECC-HHHHHHhcC
Confidence 99888654322 122246789999999 899999874
No 80
>PLN02292 ferric-chelate reductase
Probab=99.67 E-value=3.6e-16 Score=166.71 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=124.5
Q ss_pred CCCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccEEEE
Q 014169 189 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 264 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~v~v 264 (429)
.+..+|||+.+.+|. .+.|+|||+|+|..+++.++|+|+.. |..|++|.+ ++.|++ ....++.+
T Consensus 350 ~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~-----------G~~T~~L~~~l~~gd~-i~~~~V~V 417 (702)
T PLN02292 350 LMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQ-----------GKWSTKLYHMLSSSDQ-IDRLAVSV 417 (702)
T ss_pred CCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcC-----------CchhHHHHHhCCCCCc-cccceEEE
Confidence 345689988887775 36799999999854457899999853 888999988 677761 11125789
Q ss_pred EEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcC-CCCCCeEEEEecccCCcccccHHHHHH-------HH
Q 014169 265 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNN-------FE 336 (429)
Q Consensus 265 ~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~eL~~-------~~ 336 (429)
.||+|.+..+.....+++|||||+||||+++++++..+....+ ....++.|+|++|+.+ |.++.+++.. ++
T Consensus 418 eGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~ 496 (702)
T PLN02292 418 EGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELS 496 (702)
T ss_pred ECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHh
Confidence 9999977644344579999999999999999999987632111 0136899999999999 9988765543 22
Q ss_pred HcCCccEEEEEEecCCCCcc-chhhhHHHhHHHHHHhh-----cCCcEEEEeCCC
Q 014169 337 EEGVISELILAFSREGSQKE-YVQHKMMDKAAQLWSLL-----SKEGYLYVCGDA 385 (429)
Q Consensus 337 ~~~~~~~l~~a~Sr~~~~k~-yvq~~l~~~~~~l~~~l-----~~~~~vyvCGp~ 385 (429)
++ ...++...++|+.+.+. |-++ ..+.+.+.+ .+...+.+|||.
T Consensus 497 ~~-~~~~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~ 546 (702)
T PLN02292 497 SF-IDIQIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPN 546 (702)
T ss_pred hc-CCceEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCC
Confidence 33 34578888888765321 1122 222232322 145689999994
No 81
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.66 E-value=6e-16 Score=165.49 Aligned_cols=185 Identities=14% Similarity=0.112 Sum_probs=127.7
Q ss_pred CCCChHHHHHhhcCCC---CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cC----CCCCCCCcc
Q 014169 189 ATPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI----PLEGNGDCS 260 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~----~G~~~~~~~ 260 (429)
.++.+|||+.+.+|.. +.|+|||+|+|..+++.++++|++. |-.|+.|.+ ++ +|.....+.
T Consensus 337 ~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~ 405 (722)
T PLN02844 337 LKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCI 405 (722)
T ss_pred CCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccce
Confidence 4567999999987754 5799999998865467889999853 555666654 33 231111123
Q ss_pred EEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcC-CCCCCeEEEEecccCCcccccHHHHHHHH---
Q 014169 261 WAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE--- 336 (429)
Q Consensus 261 ~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~eL~~~~--- 336 (429)
.+.+.+|+|.|..+....++++||||||||||++|++++........ ....++.|+|++|+.+ |..|.+++....
T Consensus 406 ~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~ 484 (722)
T PLN02844 406 PVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQ 484 (722)
T ss_pred EEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHh
Confidence 78899999988765444579999999999999999999987631100 1236799999999999 999999886321
Q ss_pred -HcCCccEEEEEEecCCCCccchhhhHHHhHHHHHH-hhc-CCcEEEEeCCCc
Q 014169 337 -EEGVISELILAFSREGSQKEYVQHKMMDKAAQLWS-LLS-KEGYLYVCGDAK 386 (429)
Q Consensus 337 -~~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~-~l~-~~~~vyvCGp~~ 386 (429)
.+....+++..++|+......+++.+.... ...+ .++ +.+.+.+||+..
T Consensus 485 ~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~-~~~~~~~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 485 SSNQLNLKLKVFVTQEEKPNATLRELLNQFS-QVQTVNFSTKCSRYAIHGLES 536 (722)
T ss_pred HHHhcCceEEEEECCCCCCCCchhhHhhccc-hhhhcCCCCCCCceEEeCCCc
Confidence 122345788889998765445666554411 1111 123 456899999953
No 82
>PLN02631 ferric-chelate reductase
Probab=99.65 E-value=3.5e-16 Score=166.47 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=114.6
Q ss_pred CCCCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCC-CCCCCCccEE
Q 014169 188 SATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIP-LEGNGDCSWA 262 (429)
Q Consensus 188 ~~~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~-G~~~~~~~~v 262 (429)
..++.+|||+.+.+|. .+.|+|||+|+|...++.++|+|+. .|..|++|.+ ++. |+ ..++
T Consensus 332 ~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~----~i~V 396 (699)
T PLN02631 332 GLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSID----SLEV 396 (699)
T ss_pred CCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCC----eeEE
Confidence 3566789999988775 3679999999986445789999984 3889999987 544 33 1267
Q ss_pred EEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcC-CCCCCeEEEEecccCCcccccHHHHHHH------
Q 014169 263 PIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNF------ 335 (429)
Q Consensus 263 ~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~ly~~eL~~~------ 335 (429)
.+.||+|.|..+.....++||||||+||||++|++++.......+ ...+++.|+|++|+.+ |.+|.|||+.+
T Consensus 397 ~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~ 475 (699)
T PLN02631 397 STEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSD 475 (699)
T ss_pred EEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhh
Confidence 788999977665455578999999999999999999987642111 1235899999999999 99999999863
Q ss_pred HHcCCccEEEEEEecCCC
Q 014169 336 EEEGVISELILAFSREGS 353 (429)
Q Consensus 336 ~~~~~~~~l~~a~Sr~~~ 353 (429)
.+ ..+.++...+||+++
T Consensus 476 l~-~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 476 IS-RLNLRIEAYITREDK 492 (699)
T ss_pred hh-cCceEEEEEEcCCCC
Confidence 12 235678899999754
No 83
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.59 E-value=2.7e-16 Score=145.20 Aligned_cols=181 Identities=19% Similarity=0.282 Sum_probs=115.7
Q ss_pred CCCCChHHHHHhhc--CCC---CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cCCCCCCCCccE
Q 014169 188 SATPPIGVFFAAVA--PHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSW 261 (429)
Q Consensus 188 ~~~~~~gq~l~~~~--p~~---~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~~G~~~~~~~~ 261 (429)
+....+|||+.+.. |++ .-|.||.++.-....+.++|.|+.+ -.|++|+|+++ +++|| .
T Consensus 178 ~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVGD------~ 242 (385)
T KOG3378|consen 178 ISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVGD------I 242 (385)
T ss_pred eccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhccccccc------e
Confidence 34457999999973 332 2355555555444467889988866 35999999998 99999 9
Q ss_pred EEEEEeCCCccCCC---CCCCCEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHc
Q 014169 262 APIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 338 (429)
Q Consensus 262 v~v~~p~g~F~lp~---~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~ 338 (429)
|.++.|.|+|.+.. +.++|++++|+|+||||+++|++..+. .|..| .+...++++..+
T Consensus 243 v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~-------------C~~~R------P~~~~~~~~~~K 303 (385)
T KOG3378|consen 243 VGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL-------------CYSSR------PFKQWLEQLKLK 303 (385)
T ss_pred eeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh-------------cCCCC------cHHHHHHHHHHH
Confidence 99999999998764 466999999999999999999988653 23333 222233332221
Q ss_pred C-CccEEEEEEecCCC--Cccchh---hhHHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHHHHHcc
Q 014169 339 G-VISELILAFSREGS--QKEYVQ---HKMMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTIVQEQE 404 (429)
Q Consensus 339 ~-~~~~l~~a~Sr~~~--~k~yvq---~~l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~ 404 (429)
. .+.++.-.||.+.+ .+.-|. .++.. .+.+-++-...++||.||| .++++.|...|+++..+..
T Consensus 304 ~k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~-~~~L~~~~~s~~DiY~~G~-~~~M~~~~~~L~~L~~~~~ 373 (385)
T KOG3378|consen 304 YKENLKLKEFFSEESSVTKEQIVDEVMTRIIN-EEDLEKLDLSECDIYMLGP-NNYMRFVKQELVKLGVEPN 373 (385)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhhhhhhhcC-HHHhhhcChhhCceeeeCc-HHHHHHHHHHHHHhcCCcc
Confidence 0 01111111222221 122222 22221 1222222225789999999 7999999999999876543
No 84
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.99 E-value=1.2e-09 Score=96.40 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=50.0
Q ss_pred CEEEEccCcccchhHHHHHHHHHHhhc-CCCCCCeEEEEecccCCccc-ccHHHHHHHHHcC--CccEEEEEEecCCC
Q 014169 280 PIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDF-IYEDELNNFEEEG--VISELILAFSREGS 353 (429)
Q Consensus 280 pii~Ia~GtGIAP~~s~l~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~-ly~~eL~~~~~~~--~~~~l~~a~Sr~~~ 353 (429)
.++|||||+||||++++++++...... .....++.|+|.+|+.+ ++ .|.++|+++.... ..+++.+.++++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~-~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD-ELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TT-TTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchh-hhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 589999999999999999999876541 23467899999999998 54 6776666554432 34577888777543
No 85
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=6.6e-09 Score=111.59 Aligned_cols=196 Identities=19% Similarity=0.289 Sum_probs=122.5
Q ss_pred CCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhh-cC-CC-CCCCC----c
Q 014169 190 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI-PL-EGNGD----C 259 (429)
Q Consensus 190 ~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~-l~-~G-~~~~~----~ 259 (429)
+..+|||+-+-.|. ++.+||||+|+| .++.+.+.|+.. |..|.-|.+ +. +. +.+.+ .
T Consensus 381 ~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~ 447 (646)
T KOG0039|consen 381 KYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPF 447 (646)
T ss_pred CCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccC
Confidence 34689998887675 478999999999 368999999976 888888876 33 11 11111 2
Q ss_pred cEEEEEEeCCCccCCCCCCCCEEEEccCcccchhHHHHHHHHHHhhcCC------------CCCCeEEEEecccCCccc-
Q 014169 260 SWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA------------QLGPALLFFGCRNRRMDF- 326 (429)
Q Consensus 260 ~~v~v~~p~g~F~lp~~~~~pii~Ia~GtGIAP~~s~l~~~~~~~~~~~------------~~~~~~L~~G~R~~~~d~- 326 (429)
.++.+.||+|.=.-+-..-..++|||+|+|+|||.|++++.....+.+. ..+++..+|-||... ++
T Consensus 448 ~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~-sf~ 526 (646)
T KOG0039|consen 448 PKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQR-SFE 526 (646)
T ss_pred ceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEecccc-chH
Confidence 4789999999322222233567999999999999999999987544331 235677888888887 44
Q ss_pred ccHHHHHHHHHc---CCccEEEEEEecC---CC-C----------------ccchh------hhHHHhHHHHHHhhc---
Q 014169 327 IYEDELNNFEEE---GVISELILAFSRE---GS-Q----------------KEYVQ------HKMMDKAAQLWSLLS--- 374 (429)
Q Consensus 327 ly~~eL~~~~~~---~~~~~l~~a~Sr~---~~-~----------------k~yvq------~~l~~~~~~l~~~l~--- 374 (429)
.|.+.+.+.... +.. .++...+.. .. . +..++ +.-+-+.+.+.+-+.
T Consensus 527 wf~~~l~~v~~~~~~~~~-e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~ 605 (646)
T KOG0039|consen 527 WFKGLLTEVEEYDSSGVI-ELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSH 605 (646)
T ss_pred HHHHHHHHHHHHHhcCCc-hhheehhHhHhhhhhhhHHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhC
Confidence 556666665532 211 233333211 00 0 00111 000111223333221
Q ss_pred CC--cEEEEeCCCchhHHHHHHHHHHHHH
Q 014169 375 KE--GYLYVCGDAKGMARDVHRTLHTIVQ 401 (429)
Q Consensus 375 ~~--~~vyvCGp~~~M~~~v~~~L~~i~~ 401 (429)
++ .-||.||| +.|.+.+++...+...
T Consensus 606 ~~~~vgVf~CGp-~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 606 PNVRVGVFSCGP-PGLVKELRKLCNDFSS 633 (646)
T ss_pred CCceEEEEEeCC-HHHHHHHHHHHHhccc
Confidence 22 47999999 8999999998887643
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.90 E-value=5.5e-09 Score=114.46 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCHHHHHHhCCCC--CCChHHHHHhhcCC-----C-CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhh
Q 014169 177 RSLLEVMAEFPSA--TPPIGVFFAAVAPH-----L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK 248 (429)
Q Consensus 177 ~~~~dvl~~f~~~--~~~~gq~l~~~~p~-----~-~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~ 248 (429)
.+++++..+.|.+ ...||||+.+..+. + .||++||++.... .+.++|+|+++ |.+|.+|+
T Consensus 803 p~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls 870 (1028)
T PRK06567 803 DKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCK 870 (1028)
T ss_pred CCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHh
Confidence 3455555556642 45799999998532 2 5689999998754 57899999988 99999999
Q ss_pred hcCCCCCCCCccEEEEEEeCC-CccCCCCCCCCEEEEccCcccchh
Q 014169 249 NAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPF 293 (429)
Q Consensus 249 ~l~~G~~~~~~~~v~v~~p~g-~F~lp~~~~~pii~Ia~GtGIAP~ 293 (429)
++++|+ .+.+.||.| .|.++. .+.+++||||+|+||+
T Consensus 871 ~l~~Gd------~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 871 TLSENE------KVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred cCCCCC------EEEEEcccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 999998 899999999 888764 3589999999999983
No 87
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.73 E-value=4.6e-09 Score=85.50 Aligned_cols=69 Identities=22% Similarity=0.172 Sum_probs=57.0
Q ss_pred CCCChHHHHHhhcCC---CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEE
Q 014169 189 ATPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 265 (429)
Q Consensus 189 ~~~~~gq~l~~~~p~---~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~ 265 (429)
..+.+|||+.+.++. ...|+|||+|.|.. .+.++|+|+.. ..|.+|+||+++++|+ .|.+.
T Consensus 28 ~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd------~v~i~ 91 (99)
T PF00970_consen 28 LDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRY---------PNGRVSRYLHQLKPGD------EVEIR 91 (99)
T ss_dssp -SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEEC---------TTSHHHHHHHTSCTTS------EEEEE
T ss_pred cccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEec---------cCCHHHHHHHhCCCCC------EEEEE
Confidence 356899999998772 24699999999965 57899999865 3599999999999999 99999
Q ss_pred EeCCCccC
Q 014169 266 IRPSNFKL 273 (429)
Q Consensus 266 ~p~g~F~l 273 (429)
+|.|.|.+
T Consensus 92 gP~G~f~y 99 (99)
T PF00970_consen 92 GPYGNFTY 99 (99)
T ss_dssp EEESSEEE
T ss_pred EcccccCC
Confidence 99999863
No 88
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.0088 Score=57.01 Aligned_cols=170 Identities=18% Similarity=0.283 Sum_probs=104.2
Q ss_pred CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCccCCCCCCCCEEE
Q 014169 204 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 283 (429)
Q Consensus 204 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F~lp~~~~~pii~ 283 (429)
..+|.|||.+.... .+ +|.|-.|-.. ..|..|.|-.+.++|| +|.+.+|.|.+..++. ..-++|
T Consensus 85 ~~~R~YTiR~~d~~-~~--e~~vDfVlH~------~~gpas~WA~~a~~GD------~l~i~GP~g~~~p~~~-~~~~lL 148 (265)
T COG2375 85 PPQRTYTIRAVDAA-AG--ELDVDFVLHG------EGGPASRWARTAQPGD------TLTIMGPRGSLVPPEA-ADWYLL 148 (265)
T ss_pred CCcccceeeeeccc-cc--EEEEEEEEcC------CCCcchhhHhhCCCCC------EEEEeCCCCCCCCCCC-cceEEE
Confidence 46899999865432 24 4444444221 3599999999999999 9999999998776644 568999
Q ss_pred EccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhHH
Q 014169 284 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMM 363 (429)
Q Consensus 284 Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~~k~yvq~~l~ 363 (429)
||==|++--+.++|++.-. ..+...|.-..+.+ |. ..+.....+ .+... .|++.. + ...+.
T Consensus 149 igDetAlPAIa~iLE~lp~-------~~~~~a~lev~d~a-d~------~~l~~~~~l-~~~Wl-~r~~~~--~-~~ll~ 209 (265)
T COG2375 149 IGDETALPAIARILETLPA-------DTPAEAFLEVDDAA-DR------DELPSPDDL-ELEWL-ARDDAP--T-EQLLA 209 (265)
T ss_pred eccccchHHHHHHHHhCCC-------CCceEEEEEeCChH-Hh------hccCCCCce-eEEEe-cCCCcc--c-hHHHH
Confidence 9999999888888877532 34456677777766 44 112222222 34433 343321 1 11222
Q ss_pred HhHHHHHHh-hcC-CcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHH--HHHHHH
Q 014169 364 DKAAQLWSL-LSK-EGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSK--AESIVK 416 (429)
Q Consensus 364 ~~~~~l~~~-l~~-~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~--a~~~~~ 416 (429)
+. +.+. +.. +.+||+.|- ..+++.+++.|+ .+.|++... +..|++
T Consensus 210 ~a---~~~~~~P~~~~~vwiagE-~~~v~~~Rk~L~----~e~g~dk~~i~a~gYW~ 258 (265)
T COG2375 210 AA---LAQAALPAGDYYVWIAGE-ASAVKAIRKFLR----NERGFDKSRVRAIGYWR 258 (265)
T ss_pred HH---HhcccCCCCceEEEEecc-HHHHHHHHHHHh----hhcCCCHHHhhhhhhhh
Confidence 21 1111 222 369999998 677776665555 455676554 344554
No 89
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=96.14 E-value=0.00074 Score=55.58 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=4.7
Q ss_pred CHHHHHHhCCC--CCCChHHHHHhhcCCC-----CCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhc
Q 014169 178 SLLEVMAEFPS--ATPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA 250 (429)
Q Consensus 178 ~~~dvl~~f~~--~~~~~gq~l~~~~p~~-----~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l 250 (429)
++++|....|. .+..+|||+-+.+|.+ +.++|||+|+|. .+.+.|+|+.. |..|.-|.+.
T Consensus 15 ~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~~-----------g~~T~~L~~~ 81 (105)
T PF08022_consen 15 DVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKAR-----------GGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEeC-----------CCchHHHHHH
Confidence 45566556664 5778999999987753 578999999997 47899999864 7778877763
Q ss_pred -CCC-CCCCCccEEEEEEeCC
Q 014169 251 -IPL-EGNGDCSWAPIFIRPS 269 (429)
Q Consensus 251 -~~G-~~~~~~~~v~v~~p~g 269 (429)
... ++.....++.|.||+|
T Consensus 82 ~~~~~~~~~~~~~v~idGPYG 102 (105)
T PF08022_consen 82 LSESPSKQGNRLRVFIDGPYG 102 (105)
T ss_dssp ---------------TTSTTS
T ss_pred HhhhcccCCCceEEEEECCCC
Confidence 221 0011112566778887
No 90
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=93.01 E-value=0.12 Score=49.71 Aligned_cols=42 Identities=52% Similarity=0.878 Sum_probs=37.6
Q ss_pred EEeeeeecCCCCCCcEEEEEEEeCC-CCcccCCCCeEEEeccC
Q 014169 34 VAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 75 (429)
Q Consensus 34 v~~~~~Lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~v~p~N 75 (429)
|+.++++|++++.+++++++|+.++ ....|+||.++.|.+++
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 44 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN 44 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC
Confidence 5678999999999999999999985 57899999999998764
No 91
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=91.55 E-value=0.16 Score=42.57 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=29.6
Q ss_pred CCCceeecCCCCCCCCCeeEEEEEEEEccCCCCCcccCcccHHhhhcCCCCCCCCccEEEEEEeCCCc
Q 014169 204 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 271 (429)
Q Consensus 204 ~~pR~YSIaSsp~~~~~~i~l~v~~v~~~~~~g~~~~G~~S~~L~~l~~G~~~~~~~~v~v~~p~g~F 271 (429)
...|.|||.+.... .+++.|-|.+. . ..|..|.|..+.++|| .|.+.+|.|.|
T Consensus 65 p~~R~YTvR~~d~~-~~~l~iDfv~H--g------~~Gpas~WA~~A~pGd------~v~v~gP~g~~ 117 (117)
T PF08021_consen 65 PVMRTYTVRRFDPE-TGELDIDFVLH--G------DEGPASRWARSARPGD------RVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEE--EEETT---EEEEEEE----S------S--HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCcCEeeEcCC-CCEEEEEEEEC--C------CCCchHHHHhhCCCCC------EEEEeCCCCCC
Confidence 35799999987543 34555554432 1 1289999999999999 99999999877
No 92
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=89.33 E-value=0.96 Score=43.95 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=43.9
Q ss_pred CCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 24 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 24 ~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
|-.++++.++|++.+.+++.+...++++++|+.+ ..+.|+||.++.|.++.
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~~ 53 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPPG 53 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECCC
Confidence 5678899999999999998776679999999984 47899999999998653
No 93
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=88.88 E-value=1.1 Score=44.18 Aligned_cols=52 Identities=17% Similarity=0.343 Sum_probs=44.6
Q ss_pred CCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 23 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 23 ~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
.|-...+|.++|++.+.++.+.+..++++|+|+.+. .+.|+||..+.|.++.
T Consensus 18 ~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-~~~f~aGQy~~l~~~~ 69 (307)
T PLN03116 18 LYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPG 69 (307)
T ss_pred eccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC-CCceecCceEeeeCCC
Confidence 456778899999999999977766799999999874 6899999999998763
No 94
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=71.86 E-value=9.2 Score=37.19 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=37.9
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCCC------CcccCCCCeEEEeccC
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT------GITYETGDHVGVYVEN 75 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~------~~~y~~GD~l~v~p~N 75 (429)
..+.++|++.+.+++.+ ..++++++|..++. ...|+||+++.|.|++
T Consensus 44 ~~~~~~l~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g 96 (289)
T cd06201 44 RTKALELVERKDYGAAV-QAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG 96 (289)
T ss_pred CccceEEEeeeecCCCC-CCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC
Confidence 45678899999998755 56899999998752 4789999999998754
No 95
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=70.67 E-value=15 Score=28.99 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=31.0
Q ss_pred EEEEEeeeeecCCCCCCcEEEEEEEeCCC--CcccCCCCeEEEecc
Q 014169 31 RVNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 74 (429)
Q Consensus 31 ~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~v~p~ 74 (429)
.|+|++.+.++. ++++++|.+++. .+.|.||.++.|.-+
T Consensus 1 ~~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 1 KAKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred CEEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 378999999984 789999998853 478999999999876
No 96
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=63.12 E-value=16 Score=33.82 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=33.5
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCCC-CcccCCCCeEEEeccC
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 75 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~v~p~N 75 (429)
|.++|++.+.++. +++++.|+.+.. .+.|+||.++.|..++
T Consensus 1 ~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 1 FVGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred CceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 5689999999985 688999987653 5789999999998654
No 97
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=55.69 E-value=22 Score=32.49 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=33.1
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCC
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 76 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~ 76 (429)
|.++|++.+.+++ +++++.|+.++ .+.|+||.++.|..+++
T Consensus 1 ~~~~v~~~~~~~~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 1 HTVTLLSIEPVTH-----DVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred CceEEEEEEEcCC-----CeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 3578999998874 78999998765 58999999999975543
No 98
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=53.53 E-value=30 Score=32.64 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=28.0
Q ss_pred ecCCCCC-CcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 40 LHKPDSD-RSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 40 Lt~~~~~-~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
++.+++. .++++|+|+.++....|+||..+.|.+++
T Consensus 8 ~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 8 LLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred ecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 4444543 38999999987557899999999998764
No 99
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=52.98 E-value=33 Score=31.68 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=32.4
Q ss_pred EEEEEeeeeecCCCCCCcEEEEEEEeCCCC-cccCCCCeEEEeccC
Q 014169 31 RVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 75 (429)
Q Consensus 31 ~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~v~p~N 75 (429)
.++|++++.+++ +++.+.|+.++.. ..|+||.++.|..++
T Consensus 3 ~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 478899998874 7889999987632 789999999998653
No 100
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=52.90 E-value=36 Score=31.38 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=33.9
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCC-CCcccCCCCeEEEeccC
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 75 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~v~p~N 75 (429)
|.++|++.+.+++ +++.|.|+.++ ....|+||.++.|..++
T Consensus 2 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 2 FEATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eeEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 5789999999885 68999999876 35789999999997654
No 101
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=51.13 E-value=39 Score=31.42 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCC-cccCCCCeEEEeccC
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 75 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~v~p~N 75 (429)
.++.++|++.+.+++ +++.+.|+.+... ..|+||.++.|..++
T Consensus 5 ~~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 5 KDFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred eEEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 357899999999984 7889999987532 589999999998654
No 102
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=51.10 E-value=41 Score=31.67 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=34.2
Q ss_pred CEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCC
Q 014169 29 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 76 (429)
Q Consensus 29 ~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~ 76 (429)
+..++|++.+.+++ +++.|+|+.+ ....|+||.++.|..++.
T Consensus 4 ~~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 4 PENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred ceEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 56789999999984 7889999854 467899999999986654
No 103
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=50.23 E-value=41 Score=33.24 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccCC
Q 014169 24 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 76 (429)
Q Consensus 24 ~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~ 76 (429)
+....|+.++|++.+.+++ +++.+.|..++ ...|+||.++.|..++.
T Consensus 4 ~~~~~~~~~~V~~i~~~t~-----~v~~l~l~~~~-~~~f~pGQfv~l~~~~~ 50 (332)
T PRK10684 4 PTPQCPNRMQVHSIVQETP-----DVWTISLICHD-FYPYRAGQYALVSIRNS 50 (332)
T ss_pred cCCCCceeEEEEEEEccCC-----CeEEEEEcCCC-CCCcCCCCEEEEEecCC
Confidence 3456788999999999985 78888887554 57899999999976654
No 104
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=50.12 E-value=25 Score=32.73 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=32.6
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCCCC---cccCCCCeEEEecc
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG---ITYETGDHVGVYVE 74 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~---~~y~~GD~l~v~p~ 74 (429)
|.++|++.+.++. +++.++|..+... ..|+||.++.|.++
T Consensus 2 ~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 2 HPLTVAEVVRETA-----DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred ceEEEEEEEecCC-----CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 5688999998874 7888999987532 58999999999976
No 105
>PRK08051 fre FMN reductase; Validated
Probab=45.64 E-value=50 Score=30.65 Aligned_cols=40 Identities=8% Similarity=0.159 Sum_probs=32.7
Q ss_pred CEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEecc
Q 014169 29 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 74 (429)
Q Consensus 29 ~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~ 74 (429)
.+.++|++.+.+++ ++++|.|..++ .+.|+||.++.|..+
T Consensus 2 ~~~~~v~~i~~~~~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~ 41 (232)
T PRK08051 2 TLSCKVTSVEAITD-----TVYRVRLVPEA-PFSFRAGQYLMVVMG 41 (232)
T ss_pred eeEEEEEEEecCCC-----CeEEEEEecCC-CCccCCCCEEEEEcC
Confidence 46789999988874 78899998654 689999999999853
No 106
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=44.97 E-value=51 Score=30.36 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=31.9
Q ss_pred EEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 31 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 31 ~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
.++|++.+.+++ +++.++|..+. ...|+||.++.|..+.
T Consensus 2 ~~~v~~~~~~t~-----~~~~~~l~~~~-~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLTH-----DIVRLTVQLDR-PIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecCC-----CEEEEEEecCC-CCCcCCCCEEEEEeCC
Confidence 478999998874 78899998754 5789999999998754
No 107
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=43.53 E-value=60 Score=23.88 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHccCCCHHHHHHHHHHHHHCCCeEE
Q 014169 401 QEQENVDSSKAESIVKKFQMEGRYLR 426 (429)
Q Consensus 401 ~~~~~~~~~~a~~~~~~l~~~~Ry~~ 426 (429)
++..|++...|..+|..|+++|+...
T Consensus 22 A~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 22 ADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 34458899999999999999998764
No 108
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=43.09 E-value=76 Score=29.58 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=33.2
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCCC-C-cccCCCCeEEEeccCC
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-G-ITYETGDHVGVYVENC 76 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~-~-~~y~~GD~l~v~p~N~ 76 (429)
-.++|++.+.++. ++++|+|+.++. . ..|+||+++.|...++
T Consensus 7 ~~~~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 4578888888874 689999998753 2 6899999999986543
No 109
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=42.87 E-value=98 Score=25.61 Aligned_cols=95 Identities=22% Similarity=0.359 Sum_probs=54.4
Q ss_pred CEEEEccCcccchhHHHHHHHHHHhhcCCCCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCC--Cccc
Q 014169 280 PIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS--QKEY 357 (429)
Q Consensus 280 pii~Ia~GtGIAP~~s~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~--~k~y 357 (429)
.++|+|=-|++--+.++|++.- ...+...++-..+.+ |... |.. ....+++.. .|+.. ...-
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp-------~~~~~~v~iev~~~~-d~~~---l~~----~~~~~v~wv-~r~~~~~~~~~ 66 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALP-------ADAPGTVFIEVPDEA-DRQP---LPA----PAGVEVTWV-PRDGPAAQGSA 66 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS--------TT-EEEEEEEESSGG-G--------------TEEEEEEE-E-SS--TT-HH
T ss_pred eEEEEeccccHHHHHHHHHhCC-------CCCeEEEEEEECChH-hccc---CCC----CCCCEEEEE-eCCCCCchHHH
Confidence 5789999999999999998752 345677777777766 5322 222 333344444 34432 1111
Q ss_pred hhhhHHHhHHHHHHhh--cCCcEEEEeCCCchhHHHHHHHHHH
Q 014169 358 VQHKMMDKAAQLWSLL--SKEGYLYVCGDAKGMARDVHRTLHT 398 (429)
Q Consensus 358 vq~~l~~~~~~l~~~l--~~~~~vyvCGp~~~M~~~v~~~L~~ 398 (429)
+.+.+ .++. ..+..+|++|- ..+++.+++.|++
T Consensus 67 l~~al-------~~~~~~~~~~~vW~AgE-~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 67 LADAL-------RDLPLPAGDGYVWVAGE-ASAVRALRRHLRE 101 (119)
T ss_dssp HHHHH-------TTS---SS-EEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHH-------HHhhccCCCeEEEEEec-HHHHHHHHHHHHH
Confidence 12222 2222 24679999998 7899999988874
No 110
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=39.02 E-value=87 Score=29.14 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=34.1
Q ss_pred CCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEecc
Q 014169 26 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 74 (429)
Q Consensus 26 ~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~ 74 (429)
...-+.++|++...++. ++++|+|+.+.....|+||.++.|..+
T Consensus 14 ~~~~~~~~v~~i~~~~~-----~~~~i~l~~~~~~~~~~pGQ~i~l~~~ 57 (243)
T cd06216 14 SARELRARVVAVRPETA-----DMVTLTLRPNRGWPGHRAGQHVRLGVE 57 (243)
T ss_pred ccceeEEEEEEEEEcCC-----CcEEEEEecCCCCCCcCCCceEEEEEE
Confidence 33446788999988874 688999987654468999999999854
No 111
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=38.46 E-value=24 Score=26.71 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=14.6
Q ss_pred ccCCCCeEEEeccCCH
Q 014169 62 TYETGDHVGVYVENCD 77 (429)
Q Consensus 62 ~y~~GD~l~v~p~N~~ 77 (429)
.|++||.+.|+..|+-
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 5999999999999984
No 112
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=38.08 E-value=59 Score=29.87 Aligned_cols=38 Identities=8% Similarity=0.268 Sum_probs=30.6
Q ss_pred EEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 32 VNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 32 ~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
++|++.+.+++ ++++++|..++ ...|+||.++.|..++
T Consensus 1 ~~v~~~~~~t~-----~~~~l~l~~~~-~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 1 CKVESIEPLND-----DVYRVRLKPPA-PLDFLAGQYLDLLLDD 38 (224)
T ss_pred CEEEEEEeCCC-----ceEEEEEecCC-CcccCCCCEEEEEcCC
Confidence 35777777764 78999998875 6899999999999754
No 113
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=38.02 E-value=76 Score=31.37 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCC-CCcccCCCCeEEEeccC
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 75 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~v~p~N 75 (429)
..+.++|++.+.++. ++++++|+.++ ..+.|+||.++.|..++
T Consensus 101 ~~~~~~V~~~~~~~~-----d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 101 KKLPCRVASLERVAG-----DVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred eEEEEEEEEEEcCCC-----cEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 345688888888874 78999999874 35789999999998764
No 114
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=37.84 E-value=57 Score=31.40 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=34.4
Q ss_pred EEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 014169 378 YLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 419 (429)
Q Consensus 378 ~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 419 (429)
..=++|+.|++.-.+.++|.+.+.+.+|+++++|.+++.++.
T Consensus 168 ~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 168 ASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred eeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334566666899999999999998888999999999988754
No 115
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=36.42 E-value=33 Score=28.04 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=29.8
Q ss_pred CCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHCCC
Q 014169 383 GDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQMEGR 423 (429)
Q Consensus 383 Gp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R 423 (429)
|. ..+...=..-|.+-+++.|.++.++|..|++.|.++.+
T Consensus 17 G~-~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 17 GL-AAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred cH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44 44555555555666778999999999999999987655
No 116
>PRK05802 hypothetical protein; Provisional
Probab=35.56 E-value=96 Score=30.66 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=35.4
Q ss_pred CCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCC--cccCCCCeEEEecc
Q 014169 25 DIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTG--ITYETGDHVGVYVE 74 (429)
Q Consensus 25 ~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~--~~y~~GD~l~v~p~ 74 (429)
....++.++|++++.+++ +++.++|+.++.. ..++||..+.|..+
T Consensus 60 ~~~~~~~~~I~~~~~~t~-----dv~~l~l~~p~~~~~~~~~PGQFv~l~~~ 106 (320)
T PRK05802 60 EGRKTYECKIIKKENIED-----NLIILTLKVPHKLARDLVYPGSFVFLRNK 106 (320)
T ss_pred CccccEeEEEEEEEEecC-----CEEEEEEECCchhhhccCCCCceEEEEEc
Confidence 345678899999999975 7889999887531 35899999999754
No 117
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=35.44 E-value=96 Score=28.62 Aligned_cols=41 Identities=7% Similarity=0.245 Sum_probs=32.6
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCCC-----CcccCCCCeEEEeccC
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-----GITYETGDHVGVYVEN 75 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~-----~~~y~~GD~l~v~p~N 75 (429)
+.++|++.+.++. +++.+.|+.++. ...|+||.++.|..+.
T Consensus 2 ~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 47 (236)
T cd06210 2 REAEIVAVDRVSS-----NVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG 47 (236)
T ss_pred ceEEEEEEeecCC-----ceEEEEEEeCCcccccccCCcCCCCEEEEEcCC
Confidence 4678888888874 788999988653 3789999999997653
No 118
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=35.37 E-value=52 Score=31.00 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=32.1
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEecc
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 74 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~ 74 (429)
.++.++|++.+.+++ +++.+.|..+. ..|+||.++.|..+
T Consensus 3 ~~~~~~V~~i~~~t~-----~v~~l~l~~~~--~~~~pGQfv~l~~~ 42 (248)
T PRK10926 3 DWVTGKVTKVQNWTD-----ALFSLTVHAPV--DPFTAGQFTKLGLE 42 (248)
T ss_pred ccEEEEEEEEEEcCC-----CeEEEEEeCCC--CCCCCCCEEEEEEe
Confidence 467899999998874 68889888652 47999999988754
No 119
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=35.25 E-value=1e+02 Score=30.02 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=38.8
Q ss_pred CCCCCCCCCCEEEEEEeeeeecCCCCCCcEEEEEEEeCC--CCcccCCCCeEEEeccC
Q 014169 20 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSG--TGITYETGDHVGVYVEN 75 (429)
Q Consensus 20 ~~~~~~~~~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~--~~~~y~~GD~l~v~p~N 75 (429)
...+.+...+...+|++.+.+++ +++.++|.+++ ..+.|+||.++.|..++
T Consensus 24 ~~~~~~~~~~~~~~v~~~~~~s~-----d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~ 76 (300)
T PTZ00319 24 PPVALDPDMFQHFKLIKKTEVTH-----DTFIFRFALHSPTQRLGLPIGQHIVFRCDC 76 (300)
T ss_pred CccccCcCceEEEEEEEEEEcCC-----CceEEEEECCCCcccCCCccceEEEEEEEe
Confidence 34455677777889999999884 67788888753 23689999999998654
No 120
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=34.46 E-value=55 Score=26.69 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=27.9
Q ss_pred EeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Q 014169 381 VCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKF 418 (429)
Q Consensus 381 vCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l 418 (429)
+||+.|++.-.+.+.|.+.... .|++.++|++++.++
T Consensus 12 lsGsgpA~~~~~~eal~~a~v~-~Gl~~~~A~~lv~~t 48 (107)
T PF14748_consen 12 LSGSGPAYFFLFIEALADAAVA-QGLPREEARKLVAQT 48 (107)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 4566567888888999888876 689999999988864
No 121
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=32.96 E-value=58 Score=33.31 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=33.3
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCC-CCcccCCCCeEEEeccC
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 75 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~v~p~N 75 (429)
|.++|++++.+++ +++++.|..++ ..+.|+||.++.|..++
T Consensus 134 ~~~~V~~~~~ls~-----~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 175 (409)
T PRK05464 134 WECTVISNDNVAT-----FIKELVLKIPEGEEVPFRAGGYIQIEAPP 175 (409)
T ss_pred EEEEEEEcccCCc-----hhheEEEecCCCCcccccCCceEEEEccc
Confidence 6788888888875 67889998875 36789999999998653
No 122
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=31.68 E-value=45 Score=31.79 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=35.9
Q ss_pred ccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhc
Q 014169 119 CTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL 159 (429)
Q Consensus 119 ~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l 159 (429)
=-|+++|-+||+.++ .+.++...|..|-.+.+.|+.|.+|
T Consensus 215 e~Lqd~fh~fLEeRG-I~esl~~FL~~ym~~Kd~rEYl~Wl 254 (263)
T KOG2536|consen 215 EELQDSFHRFLEERG-IKESLASFLHAYMKNKDSREYLRWL 254 (263)
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 368899999999998 8899999999999998888888877
No 123
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=31.46 E-value=62 Score=30.43 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=27.7
Q ss_pred EeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 35 AVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 35 ~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
++.+.++ .++++|+|..++....|+||+++.|..++
T Consensus 2 ~~~~~~t-----~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 37 (246)
T cd06218 2 LSNREIA-----DDIYRLVLEAPEIAAAAKPGQFVMLRVPD 37 (246)
T ss_pred cceeEec-----CCeEEEEEeCcchhccCCCCcEEEEEeCC
Confidence 4455565 37899999977545789999999998765
No 124
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=31.18 E-value=1.2e+02 Score=29.33 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCC--CCcccCCCCeEEEeccC
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSG--TGITYETGDHVGVYVEN 75 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~--~~~~y~~GD~l~v~p~N 75 (429)
-++.++|++.+.+++.. .+..+++.-+. ..+.|+||.++.|..++
T Consensus 4 ~~~~~~V~~~~~~t~d~---~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~ 50 (289)
T PRK08345 4 ALHDAKILEVYDLTERE---KLFLLRFEDPELAESFTFKPGQFVQVTIPG 50 (289)
T ss_pred CceeEEEEEEEecCCCC---CEEEEEEeCccccCCCCcCCCCEEEEEcCC
Confidence 45779999999998521 23444443331 24679999999997654
No 125
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=29.99 E-value=1.1e+02 Score=28.03 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=29.4
Q ss_pred EEEeeeeecCCCCCCcEEEEEEEeCCCC-cccCCCCeEEEecc
Q 014169 33 NVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVE 74 (429)
Q Consensus 33 ~v~~~~~Lt~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~v~p~ 74 (429)
+|++.+.++. ++++++|..+... ..|+||.++.|.-+
T Consensus 2 ~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 39 (231)
T cd06215 2 RCVKIIQETP-----DVKTFRFAAPDGSLFAYKPGQFLTLELE 39 (231)
T ss_pred eEEEEEEcCC-----CeEEEEEECCCCCcCCcCCCCeEEEEEe
Confidence 5777788874 7889999987533 78999999999754
No 126
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=29.47 E-value=1.8e+02 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=16.1
Q ss_pred cEEEEEEEeCCCCcccCCCCeEEEecc
Q 014169 48 SCIHLEFDVSGTGITYETGDHVGVYVE 74 (429)
Q Consensus 48 ~~~~i~l~~~~~~~~y~~GD~l~v~p~ 74 (429)
..++++|.-....+...+||.+.+.|.
T Consensus 32 ~~iEvel~~~~~~l~l~~G~~V~l~Pr 58 (58)
T PF12857_consen 32 EPIEVELPRERRQLGLQPGDRVYLRPR 58 (58)
T ss_pred CEEEEEeCHhHHhcCCCCCCEEEEEeC
Confidence 343443332223467888999988874
No 127
>PRK05713 hypothetical protein; Provisional
Probab=29.41 E-value=91 Score=30.50 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=31.9
Q ss_pred EEEEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEecc
Q 014169 30 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVE 74 (429)
Q Consensus 30 ~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~ 74 (429)
+.++|++.+.++. +++.++|+.+. .+.|+||.++.|..+
T Consensus 92 ~~~~V~~~~~~t~-----dv~~l~l~~~~-~~~~~~GQfv~l~~~ 130 (312)
T PRK05713 92 LPARVVALDWLGG-----DVLRLRLEPER-PLRYRAGQHLVLWTA 130 (312)
T ss_pred CCeEEEEEecCCC-----CEEEEEEccCC-cCCcCCCCEEEEecC
Confidence 4588999888874 78899998654 689999999999864
No 128
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=29.01 E-value=1.5e+02 Score=29.49 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCC--CCcccCCCCeEEEeccC
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSG--TGITYETGDHVGVYVEN 75 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~--~~~~y~~GD~l~v~p~N 75 (429)
.++.++|++.+.++. +++.+.|+.++ ..+.|+||.++.|..+.
T Consensus 105 ~~~~~~V~~i~~~s~-----di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 149 (340)
T PRK11872 105 LKISGVVTAVELVSE-----TTAILHLDASAHGRQLDFLPGQYARLQIPG 149 (340)
T ss_pred ceeeEEEEEEEecCC-----CeEEEEEEcCCCCCccCcCCCCEEEEEeCC
Confidence 456789999999974 68889998763 25789999999998653
No 129
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.96 E-value=90 Score=30.02 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=31.0
Q ss_pred EeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 014169 381 VCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 419 (429)
Q Consensus 381 vCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 419 (429)
+||+.|++.-.+.++|.+.+.+. |++.++|.+++.++.
T Consensus 171 lsgsgPAf~~~~~eal~~a~v~~-Gl~~~~A~~l~~~t~ 208 (272)
T PRK12491 171 ISGSSPAYVYMFIEAMADAAVLG-GMPRKQAYKFAAQAV 208 (272)
T ss_pred hccCcHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 44444578899999999999886 899999999988754
No 130
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=28.77 E-value=94 Score=28.35 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=27.1
Q ss_pred EeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 35 AVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 35 ~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
++.+.+++ ++++++|..++ ...|+||.++.|..++
T Consensus 2 ~~~~~~~~-----~~~~~~l~~~~-~~~~~pGq~i~l~~~~ 36 (224)
T cd06187 2 VSVERLTH-----DIAVVRLQLDQ-PLPFWAGQYVNVTVPG 36 (224)
T ss_pred eeeeecCC-----CEEEEEEEeCC-CCCcCCCceEEEEcCC
Confidence 44555553 78999999876 4889999999998764
No 131
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=28.59 E-value=72 Score=32.59 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=33.5
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCCC-CcccCCCCeEEEeccC
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 75 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~v~p~N 75 (429)
..+.++|++++.+++ +++.+.|..++. .+.|+||.++.|..++
T Consensus 128 ~~~~~~v~~~~~~s~-----~i~~l~l~~~~~~~~~~~pGQfv~l~~~~ 171 (405)
T TIGR01941 128 KKWECEVISNDNVAT-----FIKELVLKLPDGESVPFKAGGYIQIEAPP 171 (405)
T ss_pred ceeeeEEEEcccccc-----hhheEEEecCCCceeeecCCceEEEEccc
Confidence 346788888888874 678888888753 4799999999998664
No 132
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=28.38 E-value=82 Score=22.90 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCCCcccCCCCeEEEeccCCHHHHHHHHHHhC
Q 014169 57 SGTGITYETGDHVGVYVENCDETVEEAGKLLG 88 (429)
Q Consensus 57 ~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~ 88 (429)
+..+...++||.|.|... ++.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 334688999999999776 567888888775
No 133
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=28.24 E-value=1.1e+02 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=28.6
Q ss_pred EEEeeeeecCCCCCCcEEEEEEEeCCC-CcccCCCCeEEEeccC
Q 014169 33 NVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 75 (429)
Q Consensus 33 ~v~~~~~Lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~v~p~N 75 (429)
+|++.+.+++ ++++++|+.++. .+.|+||.++.|..++
T Consensus 2 ~v~~i~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 40 (231)
T cd06191 2 RVAEVRSETP-----DAVTIVFAVPGPLQYGFRPGQHVTLKLDF 40 (231)
T ss_pred EEEEEEecCC-----CcEEEEEeCCCCCCCCCCCCCeEEEEEec
Confidence 4666677763 788999998754 3589999999997643
No 134
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=27.46 E-value=77 Score=30.45 Aligned_cols=43 Identities=9% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCEEEEEEeeeeecCCCCCCcEEEEEEEeCCC-CcccCCCCeEEEeccC
Q 014169 28 HPCRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 75 (429)
Q Consensus 28 ~~~~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~v~p~N 75 (429)
..+.++|++.+.++. +++.+.|..++. .+.|+||.++.|..++
T Consensus 8 ~~~~~~v~~~~~~~~-----d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 51 (283)
T cd06188 8 KKWECTVISNDNVAT-----FIKELVLKLPSGEEIAFKAGGYIQIEIPA 51 (283)
T ss_pred ceEEEEEEEcccccc-----hhhheEEecCCCceeeecCCceEEEEcCC
Confidence 346688999999884 678899988753 3789999999998654
No 135
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=27.45 E-value=75 Score=31.75 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.5
Q ss_pred CEEEEccCcc--cchhHHHHHHHHH
Q 014169 280 PIIMVGPGTG--LAPFRGFLQERMA 302 (429)
Q Consensus 280 pii~Ia~GtG--IAP~~s~l~~~~~ 302 (429)
.+++.||||| |-|-+++.+++..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 5899999999 9999999998764
No 136
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=26.44 E-value=1.1e+02 Score=28.85 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=29.3
Q ss_pred eCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 014169 382 CGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 419 (429)
Q Consensus 382 CGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 419 (429)
+|+.|++.-.+.+.|.+.+.+. |++.++|.+++.++.
T Consensus 152 sgsgPA~~~~~~~al~~~~v~~-Gl~~~~A~~lv~~~~ 188 (245)
T TIGR00112 152 SGSGPAYVFLFIEALADAGVKQ-GLPRELALELAAQTV 188 (245)
T ss_pred ccCcHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 3444468888888999888775 899999999998754
No 137
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=26.31 E-value=91 Score=28.68 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=23.3
Q ss_pred cEEEEEEEeCCCCcccCCCCeEEEeccCC
Q 014169 48 SCIHLEFDVSGTGITYETGDHVGVYVENC 76 (429)
Q Consensus 48 ~~~~i~l~~~~~~~~y~~GD~l~v~p~N~ 76 (429)
++.+|+|+.+. ...|+||.++.|..++.
T Consensus 10 ~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 37 (232)
T cd06190 10 DVAEFRFALDG-PADFLPGQYALLALPGV 37 (232)
T ss_pred CEEEEEEEcCC-ccccCCCCEEEEECCCC
Confidence 78999998775 57899999999987653
No 138
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=24.80 E-value=1.6e+02 Score=26.96 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=29.6
Q ss_pred EEEeeeeecCCCCCCcEEEEEEEeCCC--CcccCCCCeEEEeccCC
Q 014169 33 NVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVENC 76 (429)
Q Consensus 33 ~v~~~~~Lt~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~v~p~N~ 76 (429)
+|++.+.++. ++..+.|+.++. ...|+||.++.|..+.+
T Consensus 2 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~ 42 (234)
T cd06183 2 KLVSKEDISH-----DTRIFRFELPSPDQVLGLPVGQHVELKAPDD 42 (234)
T ss_pred EeEEeEecCC-----CEEEEEEECCCCCCcCCCCcccEEEEEecCC
Confidence 4667777763 678888888753 47899999999987654
No 139
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=24.41 E-value=1.4e+02 Score=28.07 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=29.3
Q ss_pred EEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 33 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 33 ~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
+|++.+.+++ +++.|+|..++....|+||.++.|...+
T Consensus 2 ~v~~~~~~t~-----d~~~~~l~~~~~~~~~~pGQf~~l~~~~ 39 (248)
T cd06219 2 KILEKEELAP-----NVKLFEIEAPLIAKKAKPGQFVIVRADE 39 (248)
T ss_pred EEEEEEEeCC-----CeEEEEEEChhhhccCCCCcEEEEEcCC
Confidence 5677777774 7888999876544689999999998654
No 140
>PF14474 RTC4: RTC4-like domain
Probab=24.36 E-value=3.6e+02 Score=22.65 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=35.6
Q ss_pred CcEEEEeCCCchhHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHH
Q 014169 376 EGYLYVCGDAKGMARDV--HRTLHTIVQEQENVDSSKAESIVKKFQM 420 (429)
Q Consensus 376 ~~~vyvCGp~~~M~~~v--~~~L~~i~~~~~~~~~~~a~~~~~~l~~ 420 (429)
+..|--.|+ ..+++.| -+.+..++++.-+++.++|.+.+++=..
T Consensus 71 d~~v~~~g~-~~f~q~VLvPEl~~~LI~EDm~v~~~~A~~il~eS~~ 116 (124)
T PF14474_consen 71 DPTVSPWGP-SDFVQYVLVPELAVRLIMEDMGVDDEEARQILEESSE 116 (124)
T ss_pred cceeccCCH-HHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 346667798 7888887 5788889999999999999999987544
No 141
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=24.35 E-value=1.2e+02 Score=28.80 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=31.3
Q ss_pred EeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 014169 381 VCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 419 (429)
Q Consensus 381 vCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 419 (429)
+||+.|++.-.+.++|.+.+.+. |++.++|.++..++.
T Consensus 164 ~~gsgPA~~~~~~~al~~~~v~~-Gl~~~~a~~l~~~~~ 201 (260)
T PTZ00431 164 ISGCGPAYVFLFIESLIDAGVKN-GLNRDVSKNLVLQTI 201 (260)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 45555678999999999998876 899999999988754
No 142
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=24.04 E-value=1.1e+02 Score=28.50 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=27.2
Q ss_pred EEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 34 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 34 v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
|++.+.+++ +++.|.|..+. ...|+||.++.|.-++
T Consensus 2 v~~~~~~t~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~~ 37 (241)
T cd06195 2 VLKRRDWTD-----DLFSFRVTRDI-PFRFQAGQFTKLGLPN 37 (241)
T ss_pred eEEEEEcCC-----CEEEEEEcCCC-CCccCCCCeEEEeccC
Confidence 566666764 58888888765 6789999999996443
No 143
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=23.66 E-value=1.7e+02 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=19.9
Q ss_pred HHHhHHHHHHhhcCCcEEEEeCCCchhHHHHHHHHHHH
Q 014169 362 MMDKAAQLWSLLSKEGYLYVCGDAKGMARDVHRTLHTI 399 (429)
Q Consensus 362 l~~~~~~l~~~l~~~~~vyvCGp~~~M~~~v~~~L~~i 399 (429)
|.+-.+.+.+.+.+++.+|+||. ..-.....+...+.
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~-G~S~~~a~~~~~~~ 57 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGN-GHSAAIASHFAADL 57 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEcC-chhhhHHHHHHHHH
Confidence 33334455556678999999999 44433333333333
No 144
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.45 E-value=1.3e+02 Score=29.88 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=30.5
Q ss_pred EEEEEeeeeecCCCCCCcEEEEEEEeCCC---CcccCCCCeEEEecc
Q 014169 31 RVNVAVRRELHKPDSDRSCIHLEFDVSGT---GITYETGDHVGVYVE 74 (429)
Q Consensus 31 ~~~v~~~~~Lt~~~~~~~~~~i~l~~~~~---~~~y~~GD~l~v~p~ 74 (429)
..+|++.+.+++ +++.+.|+.++. .+.|+||.++.|..+
T Consensus 3 ~~~V~~i~~~t~-----~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~ 44 (352)
T TIGR02160 3 RLTVAEVERLTA-----DAVAISFEIPDELAEDYRFAPGQHLTLRRE 44 (352)
T ss_pred EeEEEEEEecCC-----CeEEEEEeCCccccccCCCCCCCeEEEEEe
Confidence 467888888874 788999987642 368999999999854
No 145
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.24 E-value=1.2e+02 Score=27.93 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=65.9
Q ss_pred CCCCeEEEEecccCCcccccHHHHHHHHHcCCccEEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCcEEEEeCCCchh
Q 014169 309 QLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKAAQLWSLLSKEGYLYVCGDAKGM 388 (429)
Q Consensus 309 ~~~~~~L~~G~R~~~~d~ly~~eL~~~~~~~~~~~l~~a~Sr~~~~k~yvq~~l~~~~~~l~~~l~~~~~vyvCGp~~~M 388 (429)
..++++|+-+||.....|++..-|....+.+.. ..+.+|++.=++-..+-..+.-+ +.-.-+++..||+=|=. ..
T Consensus 17 EqgkltLl~d~~eT~gsFl~H~~l~~~Lkan~~-~cFlaf~k~fshy~i~~rKlG~~---l~t~k~rgqlvF~dgl~-~~ 91 (248)
T KOG4723|consen 17 EQGKLTLLLDTRETPGSFLFHYYLYHALKANES-TCFLAFSKTFSHYAISMRKLGMD---LKTKKNRGQLVFIDGLS-ML 91 (248)
T ss_pred CCccEEEEeecccCCceeeHHHHHHHHHhcCCc-EEEEEeecchhHHHHHHHHhCCc---eeecccCCcEEEEhhhh-hh
Confidence 458999999988877799999888887776654 48999998754211111111100 00000245577876641 11
Q ss_pred HH-HHHHHH------HHHHHHccCCCHHHHHHHHHHHHHCCCeEEeeC
Q 014169 389 AR-DVHRTL------HTIVQEQENVDSSKAESIVKKFQMEGRYLRDVW 429 (429)
Q Consensus 389 ~~-~v~~~L------~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 429 (429)
.. .+...- +..+...++-.-...+++..+.++.-+..+|+|
T Consensus 92 ~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~ 139 (248)
T KOG4723|consen 92 FAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDID 139 (248)
T ss_pred hCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeee
Confidence 11 111111 112222222233446778888888889999988
No 146
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.03 E-value=1.9e+02 Score=26.52 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=18.7
Q ss_pred cCCcEEEEeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 014169 374 SKEGYLYVCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKK 417 (429)
Q Consensus 374 ~~~~~vyvCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~ 417 (429)
.++..|++||. +. =+.....++.||+++|-++
T Consensus 109 ~~NmvImLiGN-Ks-----------DL~~rR~Vs~EEGeaFA~e 140 (216)
T KOG0098|consen 109 NENMVIMLIGN-KS-----------DLEARREVSKEEGEAFARE 140 (216)
T ss_pred CCCcEEEEEcc-hh-----------hhhccccccHHHHHHHHHH
Confidence 46778999999 42 1223334555666555544
No 147
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=22.88 E-value=1.5e+02 Score=28.46 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=30.7
Q ss_pred EEEEeeeeecCCCCCCcEEEEEEEeCCCCcccCCCCeEEEeccC
Q 014169 32 VNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 75 (429)
Q Consensus 32 ~~v~~~~~Lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~v~p~N 75 (429)
++|++++.+++ +++.++|..++....|+||..+.|..+.
T Consensus 2 ~~I~~~~~~t~-----~~~~l~l~~~~~~~~~~pGQfv~l~~~~ 40 (281)
T PRK06222 2 YKILEKEELAP-----NVFLMEIEAPRVAKKAKPGQFVIVRIDE 40 (281)
T ss_pred cEEEEEEEecC-----CEEEEEEeCchhhccCCCCeEEEEEeCC
Confidence 57888888885 6888988876534689999999998643
No 148
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.80 E-value=3.6e+02 Score=25.39 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=11.9
Q ss_pred CcEEEEeCCCchhHHHHHHHHHHHH
Q 014169 376 EGYLYVCGDAKGMARDVHRTLHTIV 400 (429)
Q Consensus 376 ~~~vyvCGp~~~M~~~v~~~L~~i~ 400 (429)
+..|-++|....+.+.+++.+.++-
T Consensus 90 ~irvr~iG~~~~Lp~~~~~~i~~~e 114 (233)
T PRK14841 90 RVRVRILGRKEGLPEKVLKKWQEVE 114 (233)
T ss_pred CcEEEEEeChhhCCHHHHHHHHHHH
Confidence 4445555554444444444444443
No 149
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=22.74 E-value=90 Score=28.22 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=24.8
Q ss_pred CcEEEEEEEeCCCCcccCCCCeEEEeccCC
Q 014169 47 RSCIHLEFDVSGTGITYETGDHVGVYVENC 76 (429)
Q Consensus 47 ~~~~~i~l~~~~~~~~y~~GD~l~v~p~N~ 76 (429)
.++++++|+.++ ...|+||.++.|..+++
T Consensus 8 ~~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 36 (223)
T cd00322 8 DDVRLFRLQLPN-GFSFKPGQYVDLHLPGD 36 (223)
T ss_pred CCeEEEEEecCC-CCCcCCCcEEEEEecCC
Confidence 478999999876 68899999999998765
No 150
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=22.63 E-value=1.8e+02 Score=21.42 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=20.8
Q ss_pred HHHccCCCHHHHHHHHHHHHHCCCeEE
Q 014169 400 VQEQENVDSSKAESIVKKFQMEGRYLR 426 (429)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 426 (429)
++.+-+++.+..+..+..|++.|+...
T Consensus 20 La~~~~~s~~~ve~mL~~l~~kG~I~~ 46 (69)
T PF09012_consen 20 LAREFGISPEAVEAMLEQLIRKGYIRK 46 (69)
T ss_dssp HHHHTT--HHHHHHHHHHHHCCTSCEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 445678899999999999999998764
No 151
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=22.05 E-value=1.2e+02 Score=29.13 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=31.5
Q ss_pred EeCCCchhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 014169 381 VCGDAKGMARDVHRTLHTIVQEQENVDSSKAESIVKKFQ 419 (429)
Q Consensus 381 vCGp~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~ 419 (429)
++|++|++.-.+.++|.+.+.+.| ++.+.|.++..++.
T Consensus 168 isGSgPAyv~~~iEal~~agv~~G-l~~~~A~~l~~~t~ 205 (266)
T COG0345 168 LSGSGPAYVFLFIEALADAGVRLG-LPREEARELAAQTV 205 (266)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 455666799999999999998876 99999999988753
No 152
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=21.35 E-value=4.1e+02 Score=25.34 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.8
Q ss_pred CCCEEEEccCcccchhHHH
Q 014169 278 SVPIIMVGPGTGLAPFRGF 296 (429)
Q Consensus 278 ~~pii~Ia~GtGIAP~~s~ 296 (429)
...++=||+|+|+.|+.--
T Consensus 45 ~~~IlDlGaG~G~l~L~la 63 (248)
T COG4123 45 KGRILDLGAGNGALGLLLA 63 (248)
T ss_pred CCeEEEecCCcCHHHHHHh
Confidence 6789999999999998543
No 153
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=21.33 E-value=56 Score=29.93 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=35.4
Q ss_pred cccHHHHHhhhcccCCCCCHHHHHHHHHhCCCHHHHHHHHhc
Q 014169 118 PCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFL 159 (429)
Q Consensus 118 ~~tl~~~l~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l 159 (429)
.-.|.++|..||+-++ .+..|...|..|+++.++++.+..|
T Consensus 157 De~Lq~~~~~yLeeRG-Id~~la~fl~~y~~~kEq~eYi~wL 197 (204)
T PF02330_consen 157 DENLQDAFMNYLEERG-IDEELANFLHDYSTDKEQREYIRWL 197 (204)
T ss_dssp BHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999888 8889999999999999988887777
No 154
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=21.26 E-value=3.1e+02 Score=27.30 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCeEEEEec-ccCCcccccHHHHHHHHHcCCccEEEEEE
Q 014169 293 FRGFLQERMALKQDGAQLGPALLFFGC-RNRRMDFIYEDELNNFEEEGVISELILAF 348 (429)
Q Consensus 293 ~~s~l~~~~~~~~~~~~~~~~~L~~G~-R~~~~d~ly~~eL~~~~~~~~~~~l~~a~ 348 (429)
+-.||..+.. .+.+.+.++.+| .++..=-+-+++|.++++.-..-++++.|
T Consensus 165 ~e~~Lsdl~~-----APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fF 216 (410)
T KOG1412|consen 165 LEGFLSDLES-----APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFF 216 (410)
T ss_pred HHHHHHHHhh-----CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeee
Confidence 4455555433 366788888888 44542236678888887652222344444
No 155
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=20.93 E-value=30 Score=18.64 Aligned_cols=10 Identities=50% Similarity=1.128 Sum_probs=7.1
Q ss_pred cccchhHHHH
Q 014169 288 TGLAPFRGFL 297 (429)
Q Consensus 288 tGIAP~~s~l 297 (429)
.|++||++-.
T Consensus 6 ~gftpfrgkf 15 (19)
T PF06753_consen 6 PGFTPFRGKF 15 (19)
T ss_pred CCCCcccccc
Confidence 5888887643
Done!