Query 014170
Match_columns 429
No_of_seqs 144 out of 249
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2608 Endoplasmic reticulum 100.0 4E-139 1E-143 1055.7 22.7 391 17-426 2-411 (469)
2 PF04137 ERO1: Endoplasmic Ret 100.0 8E-131 2E-135 993.8 11.8 335 84-427 2-349 (357)
3 COG5061 ERO1 Oxidoreductin, en 100.0 2.4E-97 5E-102 733.8 12.6 329 65-426 23-359 (425)
4 PF14812 PBP1_TM: Transmembran 52.9 0.93 2E-05 37.9 -4.0 15 15-29 63-77 (81)
5 PRK13717 conjugal transfer pro 45.6 20 0.00044 32.5 3.0 41 7-47 5-50 (128)
6 PF13746 Fer4_18: 4Fe-4S diclu 45.1 12 0.00025 29.9 1.2 27 355-381 34-60 (69)
7 PF15240 Pro-rich: Proline-ric 43.0 16 0.00035 34.8 2.0 18 22-41 2-19 (179)
8 PF15264 TSSC4: Tumour suppres 42.0 10 0.00022 33.7 0.5 13 197-209 58-70 (115)
9 PRK13673 hypothetical protein; 36.0 31 0.00068 30.9 2.6 29 6-34 81-110 (118)
10 PF12555 TPPK_C: Thiamine pyro 31.2 48 0.001 25.3 2.6 20 17-36 14-34 (53)
11 PF04712 Radial_spoke: Radial 26.7 1.4E+02 0.0029 32.8 6.0 29 358-386 135-163 (491)
12 PF01286 XPA_N: XPA protein N- 25.2 28 0.00061 24.7 0.4 23 338-380 9-31 (34)
13 PF05279 Asp-B-Hydro_N: Aspart 22.0 85 0.0018 31.4 3.1 28 10-37 4-32 (243)
14 PRK02710 plastocyanin; Provisi 21.8 83 0.0018 27.4 2.7 21 17-37 3-23 (119)
15 PF13677 MotB_plug: Membrane M 21.3 1.3E+02 0.0028 23.3 3.4 22 12-33 10-35 (58)
16 PF04282 DUF438: Family of unk 21.0 54 0.0012 26.8 1.3 21 349-369 11-31 (71)
17 COG4698 Uncharacterized protei 20.8 99 0.0022 29.9 3.2 26 9-36 3-28 (197)
18 KOG0910 Thioredoxin-like prote 20.4 70 0.0015 29.8 2.1 32 84-115 78-111 (150)
19 PHA02450 hypothetical protein 20.3 27 0.0006 26.5 -0.5 23 197-222 4-26 (53)
20 PF13124 DUF3963: Protein of u 20.3 1.3E+02 0.0027 21.9 2.8 29 272-300 7-36 (40)
No 1
>KOG2608 consensus Endoplasmic reticulum membrane-associated oxidoreductin involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-139 Score=1055.69 Aligned_cols=391 Identities=49% Similarity=0.894 Sum_probs=353.8
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCccccccccCcccchHhHHHhhhhhhhhhhHHhhcCC
Q 014170 17 TRWSLLVGALIAILIAVALAYALKSPNLSHFAPADKSCHCAQEKDKYSGVVEDCCCDYETVNQLNEQVLHPSLQELVKTP 96 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~g~v~dc~c~~etId~~N~~~l~p~L~~L~~t~ 96 (429)
+||.++++++.++.+++.++. .| .+..|||+ +.|+|+||+|+++|||++|+++|+|+|+.|+++|
T Consensus 2 ~r~~~l~~l~~~~~l~~~v~~--------~~--~~~~~~ck-----~~~~i~dc~c~~~~i~nln~~~i~~~lq~l~ksd 66 (469)
T KOG2608|consen 2 KRAIALLGLIAAVKLISVVNT--------QF--ASSICFCK-----VDGIIEDCTCDYETIDNLNNEVIYPLLQKLLKSD 66 (469)
T ss_pred chhHHHHHHHHHHHHHHhccc--------cc--cccceeee-----cccccccCCCCHHHHHHhhccccchHHHHHhccc
Confidence 458888888888888887652 11 12689999 7799999999999999999999999999999999
Q ss_pred CceeEeeeCCCCCCCCCCCCCCCCCCCccccCCCCCCCcCCCcccccCCCCC-cchhccCCC-ccccccccchhhccCCc
Q 014170 97 FFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPETEFPESFKKPFIRGLSSD-DLACQEGKP-EAAVDRTLDSQAFRGWT 174 (429)
Q Consensus 97 fFRyfKVnL~~~CPFW~dd~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~~-~~~c~~~~~-~~~vd~~l~~~~~~~w~ 174 (429)
|||||||||+++||||+||+||++++|+|++|+|+|||++|++. .++++.+ -..|..+.+ .+++|++++.++|..|.
T Consensus 67 ffryYkvnL~~~CpFW~Dd~~C~~r~C~V~~c~e~evPe~~k~~-~~~~~~~~~~e~~~~~~~~~~~d~tl~dr~f~~w~ 145 (469)
T KOG2608|consen 67 FFRYYKVNLYRDCPFWPDDGMCLNRACSVEPCPEDEVPEGWKKS-LGKYEPELCSECEDADSELGAKDRTLSDRAFLLWD 145 (469)
T ss_pred chhheeccccCCCCCCCchhhhhhcCCccccCcccccchhhhhh-hhccChhhhhhhhhccccccchhcccccccccccc
Confidence 99999999999999999999999999999999999999999994 3344432 234555655 78899999999999999
Q ss_pred ccCCC-CCCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHHHHhhhcCCCCC------C------cchhhHHHHHHHH
Q 014170 175 ETDNP-WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYP------S------KQLCQEERILYKL 241 (429)
Q Consensus 175 ~~d~~-~~~~de~~~~~~~YVDL~~NPERyTGY~G~~A~~IW~aIY~ENCf~~~------~------~~~C~EkrvfyRL 241 (429)
.+|+. ||+.|++++++++||||++||||||||+|++|+|||++||+||||++. . +++|+|||+||||
T Consensus 146 ~~d~~~~C~~dd~~s~~~~YVdLl~NPERyTGY~G~sa~rIW~sIYeeNCf~~~~~~~~~~~~~~~l~g~clEkrvfYrL 225 (469)
T KOG2608|consen 146 KHDDLSFCEVDDEESPEMVYVDLLLNPERYTGYKGPSAARIWRSIYEENCFKPDPLFDPNSIPYNWLEGLCLEKRVFYRL 225 (469)
T ss_pred ccCCccceeecCCCCCCcEEEehhcChhhhcCCCCCCHHHHHHHHHHhhCCCCCcccCCcccccchhccccHHHHHHHHH
Confidence 99997 999988888999999999999999999999999999999999999875 1 5899999999999
Q ss_pred hhhhhHHHHHHHHhhhccccccCcCCCCHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHhhhhhhccCCCCccccHHH
Q 014170 242 ISGLHSSISIHIAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQAEYETGNPMEDLKT 321 (429)
Q Consensus 242 ISGLHaSIs~Hi~~~Yl~d~~~~~w~pNl~~f~~Rv~~~PeRl~NLYF~Y~lvLRAl~Ka~p~L~~~~f~tg~~~eD~~t 321 (429)
||||||||+||||++|++-+.+..||||+++|++||++||+||+||||+|++|+|||.||+|||++.+|+||+..||++|
T Consensus 226 ISGlHsSIstHl~~~~y~~~e~~~WgpNl~~f~~Rf~~~P~Rl~NlYF~Yll~lrAl~Ki~pyl~~~~~~tgn~~eD~e~ 305 (469)
T KOG2608|consen 226 ISGLHSSISTHLCSFYYLLEETKRWGPNLDLFRARFGNGPDRLRNLYFTYLLVLRALGKIAPYLEELDFYTGNVEEDAET 305 (469)
T ss_pred HHHHHHHHHHHHhhhhcCCCcccccCcCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhcchhhhhhhcccccccchHH
Confidence 99999999999999666444444799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCCccccccCCC-CcchHHHHHHHhhhhhhhhhcCccCCccccchhhhhhHHHHHHHHhhcc
Q 014170 322 QSLMKQLLYNPQLQAACPLPFDEAKLWKGQ-RGPELKQKIQGQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSV 400 (429)
Q Consensus 322 ~~lv~~Ll~~~~~~~sc~~~FDE~~lF~~~-~~~~LKeefr~~FrNISrIMDCVgCeKCRLWGKlQt~GLgTALKILF~~ 400 (429)
+.+|.++++..+ +||.||||+.||.|+ .++.||++||+|||||||||||||||||||||||||+||||||||||+.
T Consensus 306 k~~i~~il~~i~---~~p~hFdE~~~f~gd~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~GlGTALKILfs~ 382 (469)
T KOG2608|consen 306 KSLLSDILSQIK---AFPKHFDEAELFAGDSEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQGLGTALKILFSV 382 (469)
T ss_pred HHHHHHHHHHHh---hCccccchHhhhcccccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHHHHhcc
Confidence 999999998754 599999999999998 7899999999999999999999999999999999999999999999998
Q ss_pred CCCcC---CCCCccccccceeeeeccccc
Q 014170 401 NGEEH---LSQTVSITSNGRFETSHSNFL 426 (429)
Q Consensus 401 ~~~~~---~~~~~~L~R~EiVAL~N~~~~ 426 (429)
.+.++ .+..++|+|+|||||||++-|
T Consensus 383 ~~~~~~~~~s~~~~LtR~EvVAL~N~FgR 411 (469)
T KOG2608|consen 383 KDADPFTQLSESLELTRNEVVALVNTFGR 411 (469)
T ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHH
Confidence 87542 334689999999999999865
No 2
>PF04137 ERO1: Endoplasmic Reticulum Oxidoreductin 1 (ERO1); InterPro: IPR007266 Members of this family are required for the formation of disulphide bonds in the endoplasmic reticulum [, ].; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0050660 flavin adenine dinucleotide binding, 0006467 protein thiol-disulfide exchange, 0055114 oxidation-reduction process, 0005789 endoplasmic reticulum membrane; PDB: 1RQ1_A 1RP4_A 3NVJ_A 3M31_A 3AHR_A 3AHQ_A.
Probab=100.00 E-value=8.2e-131 Score=993.76 Aligned_cols=335 Identities=51% Similarity=0.957 Sum_probs=272.7
Q ss_pred hhhhhhHHhhcCCCceeEeeeCCCCCCCCCCC-CCCCCCCCccccCCCCCCCcCCCcccccCCCCCcchhccCCCccccc
Q 014170 84 VLHPSLQELVKTPFFRYFKVKLWCDCPFWPDD-GMCRLRDCSVCECPETEFPESFKKPFIRGLSSDDLACQEGKPEAAVD 162 (429)
Q Consensus 84 ~l~p~L~~L~~t~fFRyfKVnL~~~CPFW~dd-~~C~~~~C~V~~c~e~eiP~~wr~~~~~~~~~~~~~c~~~~~~~~vd 162 (429)
+|+|+|++|+++||||||||||+++||||++| ++|++++|+|++|+|+|||+.||+ ..+++.. ..|++++.+..++
T Consensus 2 ~i~p~L~~L~~~~fFRyfKVnL~k~CpFW~dd~~~C~~~~C~V~~c~e~eiP~~wr~-~~~~~~~--~~~~~~~~~~~~~ 78 (357)
T PF04137_consen 2 KIFPLLQELVKTDFFRYFKVNLYKECPFWNDDNGMCGSRDCAVCECDENEIPEPWRA-ELSKLEQ--SACEEGSDQSDLD 78 (357)
T ss_dssp CCHHHHHHHHCSCCCCEEEEESS---SSSSSSSS---TCCCBB-TSS-GGS-GGGSH-HHTS--T--TTECCHCCHCSGG
T ss_pred cchHHHHHHhCCCCeEEEeecCCCCCCCCCCcccCcCCCCCeeeeCChhhcCccccc-ccccccc--hhcccccchhhhc
Confidence 58999999999999999999999999999998 999999999999999999999999 4444433 2355555555677
Q ss_pred cccch-hhccCCcccCC-C-CCCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHHHHhhhcCCCCCC-------cchh
Q 014170 163 RTLDS-QAFRGWTETDN-P-WTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWDAIYSENCPTYPS-------KQLC 232 (429)
Q Consensus 163 ~~l~~-~~~~~w~~~d~-~-~~~~de~~~~~~~YVDL~~NPERyTGY~G~~A~~IW~aIY~ENCf~~~~-------~~~C 232 (429)
.+++. ..+..|..+++ . ||..|++++++++||||++||||||||+|++|+|||++||+||||++.. +++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~c~~dd~~~~~~~YVDL~~NPEryTGY~G~~a~rIW~aIY~ENCF~~~~~~~~~~~~~~C 158 (357)
T PF04137_consen 79 RTLSDCDEFCDWEDHDDSDDFCDLDDESSEEGVYVDLLLNPERYTGYSGPSAHRIWRAIYEENCFKPGSPSDPSWLDGMC 158 (357)
T ss_dssp GSBGHCCCCCCCHHCCCCTTHHHHTT---TTEEEEECCCS------B-CHHHHHHHHHHHCT--B-TTSTTH-------H
T ss_pred CChhhhhhhcCccccccchhcCcCCCCCCCCceEEEcccCcccccCCCCCcHHHHHHHHHHHhCCCCCcccccccccccc
Confidence 77776 67888887764 2 7766666668999999999999999999999999999999999997643 3799
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHhhhccccc--cCcCCCCHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHhhhhhhcc
Q 014170 233 QEERILYKLISGLHSSISIHIAADYLLDEA--NNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLRAVTKAAEYLEQAEY 310 (429)
Q Consensus 233 ~EkrvfyRLISGLHaSIs~Hi~~~Yl~d~~--~~~w~pNl~~f~~Rv~~~PeRl~NLYF~Y~lvLRAl~Ka~p~L~~~~f 310 (429)
+|||||||||||||||||||||++|+++++ .+.|+||+++|++|||+|||||+||||+|+||||||+||+|||.+++|
T Consensus 159 ~EkrvfyrlISGlHaSIs~Hl~~~y~~~~~~~~g~w~pNl~~F~~R~g~~peRl~NLYF~y~~~lRAl~K~~p~l~~~~~ 238 (357)
T PF04137_consen 159 LEKRVFYRLISGLHASISIHLCAEYLNDETWEEGEWGPNLEEFMERFGEHPERLKNLYFTYLLVLRALAKAAPYLENYDF 238 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTEEECCTSS-EEEE--HHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCCHHHHHST--
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCcccccccCCCCHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999996654 268999999999999999999999999999999999999999999999
Q ss_pred CCCCccccHHHHHHHHHHhccccccccCCCCCccccccCCCCcchHHHHHHHhhhhhhhhhcCccCCccccchhhhhhHH
Q 014170 311 ETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQGQFRNISALMDCVGCEKCRLWGKLQVLGL 390 (429)
Q Consensus 311 ~tg~~~eD~~t~~lv~~Ll~~~~~~~sc~~~FDE~~lF~~~~~~~LKeefr~~FrNISrIMDCVgCeKCRLWGKlQt~GL 390 (429)
+||+..+|.+|+++|.+|++... +||.+|||+.||+++.+.+||+|||+|||||||||||||||||||||||||+||
T Consensus 239 ~tg~~~eD~~t~~~l~~ll~~~~---~~~~~FdE~~lf~~~~~~~Lk~efr~~F~NIs~IMDCV~CeKCRLWGKlQt~Gl 315 (357)
T PF04137_consen 239 NTGNDEEDAETKKLLRDLLSSAK---SCPSHFDESSLFKGDEAPQLKEEFRQHFRNISRIMDCVGCEKCRLWGKLQTQGL 315 (357)
T ss_dssp -STTSCCCCCHHHHHHHHHHCCH---HS-CCCGTTTTTTTTCHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHH
T ss_pred ccCChhhhHHHHHHHHHHHHHHH---hccccCCHHHHcCCccHHHHHHHHHHHHhhHHHHHcCcccchheeechhhhhhH
Confidence 99999999999999999998643 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcCCCCCccccccceeeeecccccc
Q 014170 391 GTALKILFSVNGEEHLSQTVSITSNGRFETSHSNFLF 427 (429)
Q Consensus 391 gTALKILF~~~~~~~~~~~~~L~R~EiVAL~N~~~~~ 427 (429)
||||||||++++..+ .++|+|+|||||||||.+|
T Consensus 316 gTALKILf~~~~~~~---~~~L~R~E~VAL~Nt~~rl 349 (357)
T PF04137_consen 316 GTALKILFSDDEKQN---PFKLQRNELVALFNTFGRL 349 (357)
T ss_dssp HHHHHHHCHHHCHHC---CCTSBHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCcCC---cCcccHHHHHHHHHHHHHH
Confidence 999999999987432 5899999999999999886
No 3
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-97 Score=733.79 Aligned_cols=329 Identities=32% Similarity=0.578 Sum_probs=285.8
Q ss_pred ccccC-cccchHhHHHhhhhhhhhhhHHhhcCCCceeEeeeCC-CCCCCCCC-CCCCCCCCCccccCCCCC-CCcCCCcc
Q 014170 65 GVVED-CCCDYETVNQLNEQVLHPSLQELVKTPFFRYFKVKLW-CDCPFWPD-DGMCRLRDCSVCECPETE-FPESFKKP 140 (429)
Q Consensus 65 g~v~d-c~c~~etId~~N~~~l~p~L~~L~~t~fFRyfKVnL~-~~CPFW~d-d~~C~~~~C~V~~c~e~e-iP~~wr~~ 140 (429)
-+|.+ |+.++. |.++|.+ +.|+|-.|+++|||+||++||+ ++||||+| ++||.+++|+|..-+|.+ ||+.|++.
T Consensus 23 ~iis~t~nss~~-i~~~ns~-vr~ll~~LteSDym~yyrlnLy~k~c~lw~ddn~mc~s~acnv~v~~e~d~vpkvW~~k 100 (425)
T COG5061 23 IIISQTDNSSTG-IYQMNSK-VRSLLPVLTESDYMFYYRLNLYAKACTLWPDDNDMCVSKACNVTVRSEEDLVPKVWKDK 100 (425)
T ss_pred heecCcccccch-HHHHhhh-hhhhhHHhhhhhHHHHHHHHHHHhhCCCCCCcchhhhcccccceehhhhhcchhHhHhh
Confidence 34544 777788 9999998 6999999999999999999999 79999998 589999999999999887 99999963
Q ss_pred cccCCCC----CcchhccCCCccccccccchhhccCCcccCCCCCCCCCCCCCcceEeeCCCCCCCCCCCCCCChhhhHH
Q 014170 141 FIRGLSS----DDLACQEGKPEAAVDRTLDSQAFRGWTETDNPWTHDDETDNAEMTYVNLQLNPERYTGYTGPSARRIWD 216 (429)
Q Consensus 141 ~~~~~~~----~~~~c~~~~~~~~vd~~l~~~~~~~w~~~d~~~~~~de~~~~~~~YVDL~~NPERyTGY~G~~A~~IW~ 216 (429)
. ++... .++.|+..+ -.|..+|+.|.....+.+||||+.||||||||+|++|++||+
T Consensus 101 l-s~f~ph~kkldq~c~~sk------------------~pd~~YCyvdn~~~~n~vyisLlenpErfTGY~g~hSa~IWr 161 (425)
T COG5061 101 L-SLFKPHSKKLDQFCSESK------------------CPDLSYCYVDNKSIFNDVYISLLENPERFTGYKGNHSAEIWR 161 (425)
T ss_pred h-hhhccchhhhhhcccccc------------------CCchhheeecCCCCCCcEEeehhcChHhhcCCCCCchHHHHH
Confidence 2 11111 122333221 112346777766778899999999999999999999999999
Q ss_pred HHhhhcCCCCCCcchhhHHHHHHHHhhhhhHHHHHHHHhhhccccccCcCCCCHHHHHHHhhccccchhhHHHHHHHHHH
Q 014170 217 AIYSENCPTYPSKQLCQEERILYKLISGLHSSISIHIAADYLLDEANNLWGQNLTLMYDRVLRYPDRVRNLYFTFLFVLR 296 (429)
Q Consensus 217 aIY~ENCf~~~~~~~C~EkrvfyRLISGLHaSIs~Hi~~~Yl~d~~~~~w~pNl~~f~~Rv~~~PeRl~NLYF~Y~lvLR 296 (429)
.||+.|||.....+.-+|||+||||||||||||+||+|.+|+ +..+|.|+|||++|++|||++||||.|+||+|++|-+
T Consensus 162 ~Iyeqncfd~~~~p~~Lekr~FyRlvSGfhaSIsTHls~~yl-n~~~g~w~pNldlfrarvgnfpdRieN~yfnYalv~~ 240 (425)
T COG5061 162 KIYEQNCFDTLLPPTLLEKRMFYRLVSGFHASISTHLSSFYL-NVFFGTWLPNLDLFRARVGNFPDRIENFYFNYALVRS 240 (425)
T ss_pred HHHHhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhcceecCCHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999998766667799999999999999999999999998 5567899999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCCccccHHHHHHHHHHhccccccccCCCCCccccccCCCCcchHHHHHHHhhhhhhhhhcCccC
Q 014170 297 AVTKAAEYLEQAEYETGNPMEDLKTQSLMKQLLYNPQLQAACPLPFDEAKLWKGQRGPELKQKIQGQFRNISALMDCVGC 376 (429)
Q Consensus 297 Al~Ka~p~L~~~~f~tg~~~eD~~t~~lv~~Ll~~~~~~~sc~~~FDE~~lF~~~~~~~LKeefr~~FrNISrIMDCVgC 376 (429)
||.|+.++|....||..+.. ++++.+.+|++.. .+-+..|||..+|+++.+..||++||+|||+||||||||||
T Consensus 241 al~kI~~~l~sftFC~~~~~---e~~~k~~~lis~i---~~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVgC 314 (425)
T COG5061 241 ALGKIDVDLSSFTFCPTDKD---ELSGKLSSLISAI---RAQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVGC 314 (425)
T ss_pred HHHhhccCCcccccCCccHH---HHHhHHHHHHHHH---HhccccccceecccCccchhhhHHHHHHHHhHHHHHHhcCc
Confidence 99999999999999855422 8888999999753 34578999999999999999999999999999999999999
Q ss_pred CccccchhhhhhHHHHHHHHhhccCCCcCCCCCccccccceeeeeccccc
Q 014170 377 EKCRLWGKLQVLGLGTALKILFSVNGEEHLSQTVSITSNGRFETSHSNFL 426 (429)
Q Consensus 377 eKCRLWGKlQt~GLgTALKILF~~~~~~~~~~~~~L~R~EiVAL~N~~~~ 426 (429)
|||||||||||+|+||||||||+.+- +.+.|+|.|+|||+||+=|
T Consensus 315 ekCrLWGkIQttGygtALKilfe~et-----~~fdLr~~E~vaLvntFdR 359 (425)
T COG5061 315 EKCRLWGKIQTTGYGTALKILFESET-----QLFDLRSLERVALVNTFDR 359 (425)
T ss_pred hhhheeeeeeecchHHHHHHHhcccc-----ccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999843 2478999999999999743
No 4
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=52.92 E-value=0.93 Score=37.94 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=3.8
Q ss_pred CCCchHHHHHHHHHH
Q 014170 15 YKTRWSLLVGALIAI 29 (429)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (429)
.+++|.|+++.|++|
T Consensus 63 kKrrwlwLlikl~lV 77 (81)
T PF14812_consen 63 KKRRWLWLLIKLFLV 77 (81)
T ss_dssp --------TTTTHCC
T ss_pred ccchhHHHHHHHHHH
Confidence 444577776655544
No 5
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=45.57 E-value=20 Score=32.45 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=25.0
Q ss_pred HhhcCCCCCCCc-hHHHHHHHHHHHHHHHHhhc----cCCCCCCCC
Q 014170 7 EKKKKGTSYKTR-WSLLVGALIAILIAVALAYA----LKSPNLSHF 47 (429)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 47 (429)
||.-.+|+.++| |.|.++++|..+++.|..|. ...|.+-.|
T Consensus 5 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~a~~s~~~~~~~~P~iV~F 50 (128)
T PRK13717 5 QKTTDVTAPRRSHWWWTVPGCLAMVLLNAAVSYGIVRLNAPVTAAF 50 (128)
T ss_pred ccCCcccccchhcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 555667776666 88888877766666554442 234555444
No 6
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=45.07 E-value=12 Score=29.92 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=18.4
Q ss_pred hHHHHHHHhhhhhhhhhcCccCCcccc
Q 014170 355 ELKQKIQGQFRNISALMDCVGCEKCRL 381 (429)
Q Consensus 355 ~LKeefr~~FrNISrIMDCVgCeKCRL 381 (429)
.++..+..+++.-.-..+||||.+|--
T Consensus 34 r~r~r~~~k~~~~~~~~~CVgCgrCv~ 60 (69)
T PF13746_consen 34 RMRYRFMHKLRDRYGEGDCVGCGRCVR 60 (69)
T ss_pred ccchhhhhhhhhhcCCccCCCcChHhh
Confidence 334445555555567889999999964
No 7
>PF15240 Pro-rich: Proline-rich
Probab=42.95 E-value=16 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 014170 22 LVGALIAILIAVALAYALKS 41 (429)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~ 41 (429)
||++|.|+|||+ |||.++
T Consensus 2 LlVLLSvALLAL--SSAQ~~ 19 (179)
T PF15240_consen 2 LLVLLSVALLAL--SSAQST 19 (179)
T ss_pred hhHHHHHHHHHh--hhcccc
Confidence 566777777765 675543
No 8
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=42.04 E-value=10 Score=33.73 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCC
Q 014170 197 QLNPERYTGYTGP 209 (429)
Q Consensus 197 ~~NPERyTGY~G~ 209 (429)
+.||||||-|+=.
T Consensus 58 v~nP~KwTkYSL~ 70 (115)
T PF15264_consen 58 VRNPEKWTKYSLD 70 (115)
T ss_pred cCCcccceeeecC
Confidence 4999999999854
No 9
>PRK13673 hypothetical protein; Provisional
Probab=36.04 E-value=31 Score=30.85 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=19.1
Q ss_pred HHhhcCCCCCCCchHHHHH-HHHHHHHHHH
Q 014170 6 AEKKKKGTSYKTRWSLLVG-ALIAILIAVA 34 (429)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 34 (429)
--|||||.++++-|...+. ++++++++..
T Consensus 81 l~r~kk~k~~~~~~~~~ii~lvlti~lG~~ 110 (118)
T PRK13673 81 LAKRKKGKPTGGFWWIFIIVLVLTILLGLI 110 (118)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3578888888888655444 5555556654
No 10
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=31.15 E-value=48 Score=25.35 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=10.1
Q ss_pred CchHHHHH-HHHHHHHHHHHh
Q 014170 17 TRWSLLVG-ALIAILIAVALA 36 (429)
Q Consensus 17 ~~~~~~~~-~~~~~~~~~~~~ 36 (429)
..|.|+++ +|++++++++++
T Consensus 14 ~~~~~lvlaaLvav~v~l~~s 34 (53)
T PF12555_consen 14 WALALLVLAALVAVAVALLIS 34 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 34555444 555555555433
No 11
>PF04712 Radial_spoke: Radial spokehead-like protein
Probab=26.67 E-value=1.4e+02 Score=32.77 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred HHHHHhhhhhhhhhcCccCCccccchhhh
Q 014170 358 QKIQGQFRNISALMDCVGCEKCRLWGKLQ 386 (429)
Q Consensus 358 eefr~~FrNISrIMDCVgCeKCRLWGKlQ 386 (429)
++.-.-+.-|.+++.=-.-.+||+||||.
T Consensus 135 ~e~~~l~~sl~~L~~~~~~~~vrFWGkI~ 163 (491)
T PF04712_consen 135 EEAFRLQLSLKQLAETEPLQSVRFWGKIL 163 (491)
T ss_pred HHHHHHHHHHHHHHhhCCccEEEEEEEEe
Confidence 34444566677777766688999999987
No 12
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=25.17 E-value=28 Score=24.68 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=11.5
Q ss_pred CCCCCccccccCCCCcchHHHHHHHhhhhhhhhhcCccCCccc
Q 014170 338 CPLPFDEAKLWKGQRGPELKQKIQGQFRNISALMDCVGCEKCR 380 (429)
Q Consensus 338 c~~~FDE~~lF~~~~~~~LKeefr~~FrNISrIMDCVgCeKCR 380 (429)
|..+|-++-||+ ..|+--|++||
T Consensus 9 C~~~f~dSyL~~--------------------~F~~~VCD~CR 31 (34)
T PF01286_consen 9 CGKPFMDSYLLN--------------------NFDLPVCDKCR 31 (34)
T ss_dssp T--EES-SSCCC--------------------CTS-S--TTT-
T ss_pred hCCHHHHHHHHH--------------------hCCcccccccc
Confidence 556677777764 45788899998
No 13
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=21.97 E-value=85 Score=31.40 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=17.5
Q ss_pred cCCCCCCCchHH-HHHHHHHHHHHHHHhh
Q 014170 10 KKGTSYKTRWSL-LVGALIAILIAVALAY 37 (429)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 37 (429)
|-|.|.+....| +|+|||.+..+||+-.
T Consensus 4 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~ 32 (243)
T PF05279_consen 4 KGGLSGSSFFTWFLVLALLGVWSSVAVVM 32 (243)
T ss_pred ccCCCCCchHHHHHHHHHHHHHHhhHhhh
Confidence 344444444667 5668888887777643
No 14
>PRK02710 plastocyanin; Provisional
Probab=21.84 E-value=83 Score=27.37 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=15.2
Q ss_pred CchHHHHHHHHHHHHHHHHhh
Q 014170 17 TRWSLLVGALIAILIAVALAY 37 (429)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (429)
+||+.+.+++|+++.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (119)
T PRK02710 3 KRLRSIAAALVAVVSSFGLGV 23 (119)
T ss_pred hhHHHHHHHHHHHHHHHHhcc
Confidence 578888887777777776444
No 15
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=21.29 E-value=1.3e+02 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=11.0
Q ss_pred CCCCCCchHHHHH----HHHHHHHHH
Q 014170 12 GTSYKTRWSLLVG----ALIAILIAV 33 (429)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~~ 33 (429)
.....++|.-.-+ +|++.++.+
T Consensus 10 ~~~~~~~WlvtyaDlmTLLl~fFVlL 35 (58)
T PF13677_consen 10 EEEGSPRWLVTYADLMTLLLAFFVLL 35 (58)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3455667855433 444444443
No 16
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=21.05 E-value=54 Score=26.83 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=17.8
Q ss_pred CCCCcchHHHHHHHhhhhhhh
Q 014170 349 KGQRGPELKQKIQGQFRNISA 369 (429)
Q Consensus 349 ~~~~~~~LKeefr~~FrNISr 369 (429)
+|.+..++|++|.+.|.+||.
T Consensus 11 ~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 11 EGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred CCCCHHHHHHHHHHHHCCCCH
Confidence 466677899999999999885
No 17
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.80 E-value=99 Score=29.86 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=16.7
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHh
Q 014170 9 KKKGTSYKTRWSLLVGALIAILIAVALA 36 (429)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (429)
+|||+-. -|.|+...|||++.++|+-
T Consensus 3 ~kk~~~n--~WKw~f~iLLAln~l~~~~ 28 (197)
T COG4698 3 RKKGTLN--YWKWLFFILLALNTLLAVL 28 (197)
T ss_pred Ccccccc--HHHHHHHHHHHHHHHHHHH
Confidence 3455433 5999888777776666544
No 18
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=70 Score=29.80 Aligned_cols=32 Identities=31% Similarity=0.329 Sum_probs=27.1
Q ss_pred hhhhhhHHhhc--CCCceeEeeeCCCCCCCCCCC
Q 014170 84 VLHPSLQELVK--TPFFRYFKVKLWCDCPFWPDD 115 (429)
Q Consensus 84 ~l~p~L~~L~~--t~fFRyfKVnL~~~CPFW~dd 115 (429)
.|.|+|++|+. ..=|++||||.+..=.+|.+-
T Consensus 78 ~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y 111 (150)
T KOG0910|consen 78 MLGPILEELVSEYAGKFKLYKVDTDEHPELAEDY 111 (150)
T ss_pred HhhHHHHHHHHhhcCeEEEEEEccccccchHhhc
Confidence 47999999995 789999999998887777653
No 19
>PHA02450 hypothetical protein
Probab=20.32 E-value=27 Score=26.52 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCChhhhHHHHhhhc
Q 014170 197 QLNPERYTGYTGPSARRIWDAIYSEN 222 (429)
Q Consensus 197 ~~NPERyTGY~G~~A~~IW~aIY~EN 222 (429)
..|||.||-|.|. -+--.||.=|
T Consensus 4 ~in~egf~ryggd---c~cg~iyty~ 26 (53)
T PHA02450 4 EINPEGFTRYGGD---CTCGPIYTYG 26 (53)
T ss_pred ccCcccceeeCCc---ccccceeeeC
Confidence 3699999999998 4778888654
No 20
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=20.30 E-value=1.3e+02 Score=21.93 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=20.2
Q ss_pred HHHHH-hhccccchhhHHHHHHHHHHHHHH
Q 014170 272 LMYDR-VLRYPDRVRNLYFTFLFVLRAVTK 300 (429)
Q Consensus 272 ~f~~R-v~~~PeRl~NLYF~Y~lvLRAl~K 300 (429)
-|.+| +..-..+|+|+-|.++++.-++..
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvs 36 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555 334457899999999887766653
Done!