Query 014173
Match_columns 429
No_of_seqs 362 out of 3185
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 1.9E-51 4.1E-56 362.6 29.7 259 101-366 78-337 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-46 2.5E-51 360.4 34.1 253 103-363 55-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-45 5.7E-50 345.5 31.8 256 105-362 2-351 (352)
4 KOG0145 RNA-binding protein EL 100.0 1.9E-42 4.2E-47 284.6 23.3 254 105-360 40-358 (360)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-40 4.1E-45 330.0 34.7 254 105-362 87-366 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 3.9E-40 8.5E-45 327.8 29.1 251 107-363 1-264 (562)
7 KOG0148 Apoptosis-promoting RN 100.0 8.9E-39 1.9E-43 264.8 22.1 229 105-365 5-243 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.1E-37 1.3E-41 296.9 30.1 242 105-361 1-352 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 1.8E-36 3.9E-41 295.0 29.7 251 103-360 86-448 (457)
10 TIGR01659 sex-lethal sex-letha 100.0 7.8E-36 1.7E-40 272.9 27.2 173 102-364 103-279 (346)
11 KOG0127 Nucleolar protein fibr 100.0 9.2E-36 2E-40 269.4 23.0 251 106-361 5-379 (678)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.7E-35 1.2E-39 283.2 29.7 242 106-360 96-480 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.5E-35 7.5E-40 290.1 28.0 244 105-359 174-501 (509)
14 TIGR01645 half-pint poly-U bin 100.0 1.3E-33 2.8E-38 271.0 29.6 160 104-267 105-281 (612)
15 KOG0144 RNA-binding protein CU 100.0 1.6E-33 3.5E-38 248.1 19.6 254 107-363 35-507 (510)
16 KOG0123 Polyadenylate-binding 100.0 1.6E-30 3.6E-35 238.9 22.3 242 107-361 2-247 (369)
17 KOG0123 Polyadenylate-binding 100.0 1.6E-30 3.4E-35 239.0 20.3 252 105-364 75-353 (369)
18 KOG0124 Polypyrimidine tract-b 100.0 1.8E-27 3.9E-32 205.6 19.1 247 106-356 113-531 (544)
19 KOG0127 Nucleolar protein fibr 100.0 4.5E-28 9.7E-33 219.8 15.7 234 106-342 117-516 (678)
20 KOG0110 RNA-binding protein (R 100.0 1E-27 2.2E-32 224.6 18.1 250 104-362 383-695 (725)
21 TIGR01645 half-pint poly-U bin 99.9 1.5E-26 3.2E-31 222.5 21.0 174 186-363 107-287 (612)
22 KOG0147 Transcriptional coacti 99.9 1.5E-27 3.2E-32 217.7 12.5 249 103-359 176-527 (549)
23 KOG0144 RNA-binding protein CU 99.9 2.2E-27 4.8E-32 209.5 12.4 173 187-366 35-212 (510)
24 KOG0148 Apoptosis-promoting RN 99.9 7.7E-26 1.7E-30 188.1 15.0 157 106-272 62-240 (321)
25 KOG0131 Splicing factor 3b, su 99.9 6.2E-26 1.3E-30 177.9 12.6 171 105-364 8-181 (203)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.7E-24 3.6E-29 204.1 23.5 167 185-361 2-172 (352)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 2.3E-24 5E-29 207.3 22.2 193 104-308 136-367 (578)
28 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-24 4.6E-29 210.4 22.3 172 184-360 87-266 (457)
29 KOG4212 RNA-binding protein hn 99.9 8.6E-24 1.9E-28 187.0 23.0 144 105-252 43-278 (608)
30 KOG0109 RNA-binding protein LA 99.9 7.4E-25 1.6E-29 184.2 14.0 153 108-366 4-156 (346)
31 KOG4211 Splicing factor hnRNP- 99.9 5.2E-23 1.1E-27 185.6 23.4 246 102-358 6-356 (510)
32 KOG0117 Heterogeneous nuclear 99.9 7.1E-23 1.5E-27 182.1 20.2 188 156-363 42-251 (506)
33 KOG4205 RNA-binding protein mu 99.9 1.4E-23 3.1E-28 185.9 15.8 176 105-366 5-182 (311)
34 KOG0145 RNA-binding protein EL 99.9 1.2E-23 2.7E-28 173.9 13.1 171 184-364 39-213 (360)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-21 3.1E-26 193.2 19.2 168 184-361 173-376 (509)
36 KOG0146 RNA-binding protein ET 99.9 1.1E-21 2.5E-26 162.9 14.1 263 101-364 14-369 (371)
37 KOG4206 Spliceosomal protein s 99.9 4.8E-20 1E-24 151.2 17.4 207 106-358 9-220 (221)
38 KOG1190 Polypyrimidine tract-b 99.8 3.8E-20 8.3E-25 162.9 15.7 245 102-362 24-375 (492)
39 PLN03134 glycine-rich RNA-bind 99.8 1.3E-19 2.8E-24 145.3 14.7 82 280-361 32-115 (144)
40 KOG0110 RNA-binding protein (R 99.8 5.5E-20 1.2E-24 173.1 13.1 159 108-270 517-693 (725)
41 KOG0124 Polypyrimidine tract-b 99.8 9.2E-20 2E-24 158.1 12.2 172 187-362 114-292 (544)
42 KOG1548 Transcription elongati 99.8 4.9E-18 1.1E-22 146.8 19.4 207 99-360 127-352 (382)
43 KOG0105 Alternative splicing f 99.8 1.3E-17 2.9E-22 131.3 18.8 181 104-356 4-186 (241)
44 KOG0120 Splicing factor U2AF, 99.8 8E-18 1.7E-22 156.7 16.2 244 105-359 174-491 (500)
45 PLN03134 glycine-rich RNA-bind 99.8 9.3E-18 2E-22 134.6 11.1 83 104-186 32-114 (144)
46 KOG1190 Polypyrimidine tract-b 99.7 5.5E-16 1.2E-20 136.9 20.3 238 107-359 151-490 (492)
47 KOG0147 Transcriptional coacti 99.7 6.4E-17 1.4E-21 148.6 10.1 175 186-365 179-363 (549)
48 KOG1457 RNA binding protein (c 99.7 7E-16 1.5E-20 125.4 14.9 227 104-347 32-273 (284)
49 KOG1456 Heterogeneous nuclear 99.7 4.7E-15 1E-19 129.5 19.8 246 101-362 26-365 (494)
50 KOG4211 Splicing factor hnRNP- 99.7 1.5E-15 3.4E-20 137.7 17.2 166 188-362 12-184 (510)
51 KOG1365 RNA-binding protein Fu 99.7 3.4E-16 7.4E-21 137.0 11.1 251 104-360 58-362 (508)
52 PF00076 RRM_1: RNA recognitio 99.6 8.8E-16 1.9E-20 108.4 8.8 70 109-179 1-70 (70)
53 KOG0125 Ataxin 2-binding prote 99.6 1.5E-15 3.2E-20 130.6 10.2 89 276-364 90-178 (376)
54 PF00076 RRM_1: RNA recognitio 99.6 1.4E-15 3E-20 107.4 8.3 69 285-353 1-70 (70)
55 TIGR01659 sex-lethal sex-letha 99.6 7.4E-15 1.6E-19 135.0 15.0 81 280-360 105-187 (346)
56 KOG0122 Translation initiation 99.6 2.4E-15 5.3E-20 124.2 9.3 82 105-186 188-269 (270)
57 KOG0149 Predicted RNA-binding 99.6 1.3E-15 2.7E-20 125.5 6.9 79 105-184 11-89 (247)
58 KOG0106 Alternative splicing f 99.6 1.7E-15 3.7E-20 126.1 7.2 167 107-357 2-168 (216)
59 PF14259 RRM_6: RNA recognitio 99.6 7.1E-15 1.5E-19 103.6 9.2 70 109-179 1-70 (70)
60 KOG0121 Nuclear cap-binding pr 99.6 6.3E-15 1.4E-19 109.1 7.9 80 280-359 34-115 (153)
61 KOG0105 Alternative splicing f 99.6 1E-14 2.2E-19 115.2 9.4 80 280-360 4-83 (241)
62 KOG0122 Translation initiation 99.6 7.3E-15 1.6E-19 121.4 8.7 80 281-360 188-269 (270)
63 KOG4207 Predicted splicing fac 99.6 9.3E-15 2E-19 117.5 8.7 81 280-360 11-93 (256)
64 PLN03120 nucleic acid binding 99.6 2.5E-14 5.4E-19 122.5 11.0 77 282-360 4-80 (260)
65 KOG0107 Alternative splicing f 99.6 4.8E-14 1E-18 110.7 11.6 78 282-362 10-87 (195)
66 PF14259 RRM_6: RNA recognitio 99.5 2.4E-14 5.2E-19 100.8 8.4 69 285-353 1-70 (70)
67 PLN03120 nucleic acid binding 99.5 2.9E-14 6.3E-19 122.1 10.1 76 106-185 4-79 (260)
68 KOG0126 Predicted RNA-binding 99.5 1.2E-15 2.5E-20 120.1 0.8 86 99-184 28-113 (219)
69 KOG0121 Nuclear cap-binding pr 99.5 1.8E-14 3.9E-19 106.7 7.0 81 104-184 34-114 (153)
70 KOG0114 Predicted RNA-binding 99.5 6.7E-14 1.4E-18 99.6 9.1 80 281-361 17-96 (124)
71 KOG0113 U1 small nuclear ribon 99.5 3.2E-14 7E-19 121.0 8.7 80 105-184 100-179 (335)
72 COG0724 RNA-binding proteins ( 99.5 1.8E-13 3.9E-18 125.4 14.1 168 106-340 115-285 (306)
73 KOG0149 Predicted RNA-binding 99.5 1.5E-13 3.2E-18 113.5 10.8 80 282-362 12-93 (247)
74 KOG0114 Predicted RNA-binding 99.5 1.2E-13 2.5E-18 98.4 8.5 81 103-186 15-95 (124)
75 KOG4207 Predicted splicing fac 99.5 2.6E-14 5.7E-19 115.0 5.8 80 105-184 12-91 (256)
76 KOG0107 Alternative splicing f 99.5 5.7E-14 1.2E-18 110.2 7.5 76 105-185 9-84 (195)
77 PLN03121 nucleic acid binding 99.5 1.4E-13 3E-18 115.8 10.0 78 104-185 3-80 (243)
78 PLN03213 repressor of silencin 99.5 8.7E-14 1.9E-18 126.0 9.2 78 105-186 9-88 (759)
79 KOG0125 Ataxin 2-binding prote 99.5 6.6E-14 1.4E-18 120.6 8.0 80 105-186 95-174 (376)
80 KOG4212 RNA-binding protein hn 99.5 2.1E-12 4.7E-17 115.4 17.7 174 185-362 43-296 (608)
81 PLN03213 repressor of silencin 99.5 1.3E-13 2.7E-18 125.0 9.5 78 281-360 9-88 (759)
82 KOG0113 U1 small nuclear ribon 99.5 7.8E-13 1.7E-17 112.7 12.4 83 280-362 99-183 (335)
83 smart00362 RRM_2 RNA recogniti 99.4 5.9E-13 1.3E-17 94.2 8.9 72 108-181 1-72 (72)
84 smart00362 RRM_2 RNA recogniti 99.4 9.2E-13 2E-17 93.1 9.5 72 284-355 1-72 (72)
85 PLN03121 nucleic acid binding 99.4 9.1E-13 2E-17 110.9 10.7 79 281-361 4-82 (243)
86 KOG0111 Cyclophilin-type pepti 99.4 1.5E-13 3.2E-18 111.7 5.5 88 280-367 8-97 (298)
87 KOG0130 RNA-binding protein RB 99.4 3.1E-13 6.8E-18 101.1 6.4 80 105-184 71-150 (170)
88 KOG1456 Heterogeneous nuclear 99.4 7.3E-12 1.6E-16 109.9 15.7 165 187-362 32-201 (494)
89 smart00360 RRM RNA recognition 99.4 1.2E-12 2.5E-17 92.3 8.5 71 111-181 1-71 (71)
90 KOG0126 Predicted RNA-binding 99.4 6.3E-14 1.4E-18 110.5 1.4 108 245-362 8-117 (219)
91 PF13893 RRM_5: RNA recognitio 99.4 2.1E-12 4.6E-17 86.2 8.5 56 299-357 1-56 (56)
92 cd00590 RRM RRM (RNA recogniti 99.4 4.8E-12 1E-16 89.9 9.9 73 284-356 1-74 (74)
93 KOG0111 Cyclophilin-type pepti 99.4 7.6E-13 1.6E-17 107.6 6.0 84 104-187 8-91 (298)
94 cd00590 RRM RRM (RNA recogniti 99.4 4.8E-12 1E-16 89.9 9.6 74 108-182 1-74 (74)
95 KOG0130 RNA-binding protein RB 99.4 1.7E-12 3.8E-17 97.1 7.1 82 280-361 70-153 (170)
96 smart00360 RRM RNA recognition 99.3 4.7E-12 1E-16 89.1 8.2 69 287-355 1-71 (71)
97 KOG0108 mRNA cleavage and poly 99.3 3E-12 6.6E-17 119.2 8.3 80 107-186 19-98 (435)
98 KOG0128 RNA-binding protein SA 99.3 3.7E-13 8.1E-18 130.0 2.0 231 105-363 570-818 (881)
99 KOG0131 Splicing factor 3b, su 99.3 2.6E-12 5.6E-17 101.7 6.0 79 280-358 7-87 (203)
100 KOG0116 RasGAP SH3 binding pro 99.3 1.4E-11 3.1E-16 114.1 11.7 79 283-362 289-369 (419)
101 KOG4660 Protein Mei2, essentia 99.3 1.3E-11 2.8E-16 114.4 9.9 73 103-180 72-144 (549)
102 smart00361 RRM_1 RNA recogniti 99.3 2.2E-11 4.7E-16 85.2 7.7 61 120-180 2-69 (70)
103 PF13893 RRM_5: RNA recognitio 99.2 2.9E-11 6.3E-16 80.6 7.3 56 123-183 1-56 (56)
104 KOG0108 mRNA cleavage and poly 99.2 4.1E-11 8.9E-16 111.8 10.8 82 283-364 19-102 (435)
105 smart00361 RRM_1 RNA recogniti 99.2 3.8E-11 8.2E-16 84.0 7.5 60 296-355 2-70 (70)
106 KOG0129 Predicted RNA-binding 99.2 4.5E-10 9.8E-15 103.4 15.5 169 102-341 255-432 (520)
107 COG0724 RNA-binding proteins ( 99.2 8.1E-11 1.7E-15 107.7 10.0 78 282-359 115-194 (306)
108 KOG0146 RNA-binding protein ET 99.2 3.7E-11 8.1E-16 100.8 5.3 87 101-187 280-366 (371)
109 KOG4206 Spliceosomal protein s 99.1 1.4E-10 3.1E-15 95.8 8.0 83 281-364 8-94 (221)
110 KOG4208 Nucleolar RNA-binding 99.1 1.8E-10 3.9E-15 93.5 8.3 85 102-186 45-130 (214)
111 KOG0109 RNA-binding protein LA 99.1 1.1E-10 2.3E-15 99.4 7.3 73 284-362 4-76 (346)
112 KOG0415 Predicted peptidyl pro 99.1 6.9E-11 1.5E-15 103.1 6.3 85 102-186 235-319 (479)
113 KOG4210 Nuclear localization s 99.1 2.1E-10 4.5E-15 102.3 8.6 177 105-361 87-265 (285)
114 KOG4454 RNA binding protein (R 99.1 2.5E-11 5.3E-16 99.0 1.2 139 103-346 6-149 (267)
115 KOG0120 Splicing factor U2AF, 99.1 8.5E-10 1.8E-14 103.6 11.3 163 103-268 286-490 (500)
116 KOG0112 Large RNA-binding prot 99.1 5.7E-10 1.2E-14 108.9 9.8 166 102-364 368-535 (975)
117 KOG0153 Predicted RNA-binding 99.0 9.7E-10 2.1E-14 96.1 8.8 77 280-360 226-303 (377)
118 KOG0132 RNA polymerase II C-te 99.0 7.8E-10 1.7E-14 106.2 8.3 79 282-364 421-499 (894)
119 KOG1365 RNA-binding protein Fu 99.0 7.5E-10 1.6E-14 97.7 7.5 144 106-253 161-347 (508)
120 KOG4307 RNA binding protein RB 99.0 3.8E-09 8.3E-14 100.2 12.3 161 191-357 316-511 (944)
121 KOG0415 Predicted peptidyl pro 99.0 8.2E-10 1.8E-14 96.5 6.1 83 280-362 237-321 (479)
122 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.7E-09 3.8E-14 100.1 8.6 83 102-184 401-483 (940)
123 KOG4307 RNA binding protein RB 99.0 6.2E-09 1.3E-13 98.8 11.5 74 283-356 868-943 (944)
124 KOG0153 Predicted RNA-binding 98.9 2.3E-09 5E-14 93.8 7.8 79 101-185 223-302 (377)
125 KOG4208 Nucleolar RNA-binding 98.9 3E-09 6.5E-14 86.5 7.4 81 280-360 47-130 (214)
126 KOG1457 RNA binding protein (c 98.9 8.8E-09 1.9E-13 84.5 10.1 84 281-364 33-122 (284)
127 KOG0132 RNA polymerase II C-te 98.9 3.4E-09 7.3E-14 101.9 7.6 79 102-186 417-495 (894)
128 KOG4661 Hsp27-ERE-TATA-binding 98.9 4.1E-09 8.9E-14 97.7 7.5 83 280-362 403-487 (940)
129 KOG0533 RRM motif-containing p 98.9 4.7E-08 1E-12 83.9 12.9 82 282-363 83-165 (243)
130 PF04059 RRM_2: RNA recognitio 98.9 2.4E-08 5.2E-13 73.0 9.4 79 106-184 1-85 (97)
131 KOG0128 RNA-binding protein SA 98.8 3.5E-10 7.5E-15 109.9 -1.1 137 105-255 666-802 (881)
132 KOG0533 RRM motif-containing p 98.7 4.5E-08 9.7E-13 84.1 8.7 83 103-186 80-162 (243)
133 KOG4676 Splicing factor, argin 98.7 1.9E-09 4.1E-14 95.5 -0.3 210 107-356 8-222 (479)
134 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.5E-12 69.5 8.6 79 283-361 2-88 (97)
135 KOG4660 Protein Mei2, essentia 98.7 3.9E-08 8.5E-13 91.7 6.3 71 280-353 73-143 (549)
136 KOG4209 Splicing factor RNPS1, 98.6 5.2E-08 1.1E-12 84.1 6.2 82 103-185 98-179 (231)
137 KOG1548 Transcription elongati 98.6 9.6E-08 2.1E-12 83.8 7.8 80 282-361 134-222 (382)
138 KOG3152 TBP-binding protein, a 98.6 2E-08 4.3E-13 84.4 3.4 74 105-178 73-158 (278)
139 KOG4205 RNA-binding protein mu 98.6 3.8E-08 8.3E-13 88.1 5.4 82 105-187 96-177 (311)
140 PF11608 Limkain-b1: Limkain b 98.6 2.1E-07 4.5E-12 64.4 7.6 70 283-360 3-77 (90)
141 KOG0116 RasGAP SH3 binding pro 98.6 7.5E-08 1.6E-12 89.6 7.2 80 105-185 287-366 (419)
142 PF11608 Limkain-b1: Limkain b 98.6 2.1E-07 4.6E-12 64.4 7.4 70 107-186 3-77 (90)
143 KOG0106 Alternative splicing f 98.6 8E-08 1.7E-12 80.6 6.1 73 283-361 2-74 (216)
144 KOG4454 RNA binding protein (R 98.6 2.9E-08 6.3E-13 81.3 2.5 79 280-358 7-85 (267)
145 KOG0226 RNA-binding proteins [ 98.5 7.7E-08 1.7E-12 80.8 4.5 135 225-361 135-271 (290)
146 KOG2193 IGF-II mRNA-binding pr 98.5 2E-08 4.3E-13 90.0 1.0 157 187-362 2-159 (584)
147 KOG0226 RNA-binding proteins [ 98.5 8.2E-08 1.8E-12 80.6 4.2 84 101-184 185-268 (290)
148 KOG4209 Splicing factor RNPS1, 98.5 6.1E-07 1.3E-11 77.5 8.9 80 280-360 99-180 (231)
149 KOG1995 Conserved Zn-finger pr 98.5 9.9E-07 2.2E-11 78.3 9.3 83 280-362 64-156 (351)
150 KOG0151 Predicted splicing reg 98.4 5.8E-07 1.3E-11 86.1 7.2 82 103-184 171-255 (877)
151 KOG0151 Predicted splicing reg 98.4 1.1E-06 2.3E-11 84.3 8.3 84 280-363 172-260 (877)
152 PF08777 RRM_3: RNA binding mo 98.3 1.5E-06 3.3E-11 65.3 6.1 70 283-356 2-76 (105)
153 COG5175 MOT2 Transcriptional r 98.1 6.2E-06 1.3E-10 72.2 6.4 88 107-194 115-212 (480)
154 PF08777 RRM_3: RNA binding mo 98.1 9.3E-06 2E-10 61.1 6.4 60 106-171 1-60 (105)
155 KOG1995 Conserved Zn-finger pr 98.0 3.9E-06 8.4E-11 74.6 4.0 83 105-187 65-155 (351)
156 KOG1855 Predicted RNA-binding 98.0 7.8E-05 1.7E-09 67.8 10.7 66 280-345 229-309 (484)
157 COG5175 MOT2 Transcriptional r 97.9 3.6E-05 7.8E-10 67.6 7.0 81 280-360 112-203 (480)
158 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.8E-05 1E-09 49.3 5.5 52 283-339 2-53 (53)
159 KOG4849 mRNA cleavage factor I 97.8 2.6E-05 5.6E-10 68.7 5.2 79 106-184 80-160 (498)
160 KOG2314 Translation initiation 97.8 7.4E-05 1.6E-09 70.2 8.2 75 283-357 59-141 (698)
161 KOG4210 Nuclear localization s 97.8 1.6E-05 3.4E-10 71.3 3.2 81 105-186 183-264 (285)
162 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00018 3.9E-09 53.2 7.6 75 282-358 6-90 (100)
163 KOG2193 IGF-II mRNA-binding pr 97.7 8.1E-06 1.8E-10 73.7 0.6 136 108-255 3-144 (584)
164 KOG4849 mRNA cleavage factor I 97.7 0.00023 5E-09 62.9 8.9 75 282-356 80-159 (498)
165 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00015 3.2E-09 47.0 4.8 52 107-165 2-53 (53)
166 KOG3152 TBP-binding protein, a 97.6 4E-05 8.6E-10 64.9 2.7 70 282-351 74-157 (278)
167 KOG0115 RNA-binding protein p5 97.5 0.00024 5.1E-09 60.4 6.1 92 160-255 6-97 (275)
168 PF08952 DUF1866: Domain of un 97.5 0.00078 1.7E-08 52.9 7.9 58 297-361 51-108 (146)
169 KOG1996 mRNA splicing factor [ 97.4 0.00039 8.5E-09 60.1 6.7 76 283-358 282-365 (378)
170 KOG4676 Splicing factor, argin 97.4 0.00031 6.6E-09 63.2 5.2 75 283-358 8-87 (479)
171 KOG2202 U2 snRNP splicing fact 97.3 0.00011 2.3E-09 62.6 2.2 63 297-359 83-147 (260)
172 KOG2314 Translation initiation 97.3 0.00056 1.2E-08 64.5 7.0 77 105-182 57-140 (698)
173 KOG2416 Acinus (induces apopto 97.3 0.00035 7.6E-09 66.3 4.7 80 279-362 441-524 (718)
174 KOG1855 Predicted RNA-binding 97.2 0.00028 6E-09 64.3 3.8 68 105-172 230-310 (484)
175 KOG2416 Acinus (induces apopto 97.2 0.00066 1.4E-08 64.5 6.0 79 102-186 440-522 (718)
176 PF08952 DUF1866: Domain of un 97.2 0.0014 3E-08 51.6 6.6 76 101-185 22-106 (146)
177 KOG0115 RNA-binding protein p5 97.2 0.0019 4.1E-08 55.1 7.8 99 243-356 7-110 (275)
178 KOG2202 U2 snRNP splicing fact 97.2 0.00011 2.5E-09 62.4 0.6 62 122-184 84-146 (260)
179 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0021 4.5E-08 47.6 6.8 77 105-183 5-89 (100)
180 KOG0129 Predicted RNA-binding 97.1 0.002 4.3E-08 60.5 7.9 64 104-167 368-432 (520)
181 PF08675 RNA_bind: RNA binding 96.5 0.016 3.4E-07 40.6 6.7 57 105-170 8-64 (87)
182 KOG0112 Large RNA-binding prot 96.4 0.0012 2.5E-08 66.0 1.2 79 280-358 370-449 (975)
183 KOG2318 Uncharacterized conser 96.4 0.02 4.3E-07 54.7 9.0 74 103-176 171-296 (650)
184 KOG1996 mRNA splicing factor [ 96.3 0.011 2.3E-07 51.5 6.2 78 106-183 281-364 (378)
185 PF10309 DUF2414: Protein of u 96.2 0.028 6.1E-07 37.3 6.6 54 283-342 6-62 (62)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0093 2E-07 49.6 4.6 71 105-175 6-82 (176)
187 PF15023 DUF4523: Protein of u 95.9 0.045 9.8E-07 42.5 7.2 75 102-184 82-160 (166)
188 KOG2591 c-Mpl binding protein, 95.9 0.043 9.4E-07 52.2 8.5 70 283-357 176-249 (684)
189 PF04847 Calcipressin: Calcipr 95.8 0.036 7.9E-07 46.3 7.1 62 295-360 8-71 (184)
190 PF15023 DUF4523: Protein of u 95.8 0.033 7.1E-07 43.3 6.0 72 281-358 85-160 (166)
191 PF07576 BRAP2: BRCA1-associat 95.5 0.13 2.8E-06 38.9 8.4 67 283-349 14-81 (110)
192 KOG4285 Mitotic phosphoprotein 95.3 0.074 1.6E-06 46.7 7.3 73 283-361 198-271 (350)
193 KOG2135 Proteins containing th 95.3 0.012 2.6E-07 54.7 2.6 76 281-361 371-447 (526)
194 PF07576 BRAP2: BRCA1-associat 95.3 0.18 3.9E-06 38.2 8.5 66 107-174 13-80 (110)
195 PF08675 RNA_bind: RNA binding 95.2 0.097 2.1E-06 36.8 6.2 55 283-344 10-64 (87)
196 PF10309 DUF2414: Protein of u 95.1 0.12 2.6E-06 34.4 6.1 53 107-168 6-62 (62)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.036 7.8E-07 46.2 4.6 81 282-362 7-100 (176)
198 KOG2068 MOT2 transcription fac 95.0 0.0083 1.8E-07 53.6 0.8 79 282-360 77-163 (327)
199 KOG0804 Cytoplasmic Zn-finger 94.9 0.074 1.6E-06 49.4 6.5 71 103-175 71-142 (493)
200 KOG2135 Proteins containing th 94.8 0.022 4.7E-07 53.1 2.8 76 105-187 371-447 (526)
201 KOG2068 MOT2 transcription fac 94.8 0.017 3.6E-07 51.7 1.9 80 107-186 78-163 (327)
202 KOG0804 Cytoplasmic Zn-finger 94.6 0.087 1.9E-06 49.0 6.2 68 282-349 74-142 (493)
203 KOG1999 RNA polymerase II tran 94.4 0.11 2.3E-06 53.2 6.8 29 146-174 208-236 (1024)
204 KOG2591 c-Mpl binding protein, 94.2 0.096 2.1E-06 50.0 5.6 70 105-181 174-247 (684)
205 KOG2253 U1 snRNP complex, subu 93.9 0.048 1E-06 53.2 3.0 72 279-357 37-108 (668)
206 PF11767 SET_assoc: Histone ly 93.7 0.4 8.6E-06 32.5 6.4 56 292-354 10-65 (66)
207 PRK11634 ATP-dependent RNA hel 93.6 0.98 2.1E-05 46.0 12.1 62 292-360 497-563 (629)
208 PF04847 Calcipressin: Calcipr 93.5 0.16 3.4E-06 42.5 5.2 60 119-184 8-69 (184)
209 PF04147 Nop14: Nop14-like fam 93.4 0.17 3.8E-06 53.1 6.5 14 118-131 426-439 (840)
210 KOG4574 RNA-binding protein (c 92.9 0.073 1.6E-06 53.4 2.7 72 108-185 300-373 (1007)
211 KOG4285 Mitotic phosphoprotein 92.9 0.31 6.7E-06 43.0 6.2 71 106-184 197-268 (350)
212 PF03880 DbpA: DbpA RNA bindin 92.6 0.64 1.4E-05 32.5 6.5 59 292-357 11-74 (74)
213 KOG4574 RNA-binding protein (c 92.6 0.085 1.8E-06 52.9 2.6 77 284-364 300-378 (1007)
214 KOG3973 Uncharacterized conser 90.9 0.51 1.1E-05 42.4 5.3 16 397-412 375-390 (465)
215 PF03880 DbpA: DbpA RNA bindin 90.6 1.2 2.6E-05 31.0 6.1 59 116-183 11-74 (74)
216 KOG2253 U1 snRNP complex, subu 89.0 0.26 5.6E-06 48.3 2.2 70 104-182 38-107 (668)
217 PF11767 SET_assoc: Histone ly 88.7 2 4.4E-05 29.1 5.7 55 117-180 11-65 (66)
218 KOG4483 Uncharacterized conser 87.6 1.2 2.5E-05 41.1 5.2 55 105-166 390-445 (528)
219 PF10567 Nab6_mRNP_bdg: RNA-re 86.8 23 0.00049 31.7 14.9 171 187-358 16-230 (309)
220 KOG2038 CAATT-binding transcri 85.9 1.2 2.7E-05 44.7 4.8 19 109-127 958-976 (988)
221 PF07292 NID: Nmi/IFP 35 domai 85.4 0.81 1.7E-05 33.0 2.5 70 233-303 1-73 (88)
222 PF05285 SDA1: SDA1; InterPro 84.7 0.69 1.5E-05 42.8 2.4 8 118-125 190-197 (324)
223 KOG3973 Uncharacterized conser 84.3 1.4 3.1E-05 39.7 4.1 12 191-202 154-165 (465)
224 KOG2891 Surface glycoprotein [ 83.6 2.5 5.4E-05 36.9 5.1 80 282-361 149-269 (445)
225 COG4547 CobT Cobalamin biosynt 82.8 2.4 5.2E-05 40.1 5.0 19 106-124 316-334 (620)
226 PF07292 NID: Nmi/IFP 35 domai 82.4 1.8 3.9E-05 31.2 3.3 56 151-206 1-72 (88)
227 KOG2318 Uncharacterized conser 82.2 5.3 0.00011 38.9 7.2 80 280-359 172-307 (650)
228 KOG2236 Uncharacterized conser 81.2 45 0.00097 31.9 12.6 28 202-244 246-273 (483)
229 PF02724 CDC45: CDC45-like pro 79.6 1.4 2.9E-05 44.9 2.6 13 239-251 400-412 (622)
230 PF03468 XS: XS domain; Inter 77.8 1.3 2.8E-05 34.0 1.4 51 284-335 10-69 (116)
231 KOG4019 Calcineurin-mediated s 77.6 3 6.4E-05 34.2 3.4 78 283-364 11-94 (193)
232 KOG2141 Protein involved in hi 77.5 2.6 5.7E-05 42.2 3.7 19 325-343 624-642 (822)
233 PF02724 CDC45: CDC45-like pro 77.2 1.8 3.9E-05 44.0 2.7 17 236-252 394-410 (622)
234 KOG0526 Nucleosome-binding fac 76.9 1 2.2E-05 43.2 0.8 8 113-120 534-541 (615)
235 KOG2295 C2H2 Zn-finger protein 76.6 0.5 1.1E-05 45.3 -1.3 74 105-178 230-303 (648)
236 PF14111 DUF4283: Domain of un 76.4 2.1 4.6E-05 34.6 2.5 96 229-327 54-150 (153)
237 PRK14548 50S ribosomal protein 75.8 10 0.00022 27.1 5.4 58 284-342 22-81 (84)
238 TIGR03636 L23_arch archaeal ri 75.2 12 0.00026 26.3 5.5 58 284-342 15-74 (77)
239 KOG2891 Surface glycoprotein [ 74.8 1.1 2.4E-05 39.0 0.4 67 107-173 150-247 (445)
240 smart00157 PRP Major prion pro 73.9 14 0.00031 30.3 6.4 6 424-429 72-77 (217)
241 KOG2141 Protein involved in hi 73.6 3.5 7.6E-05 41.4 3.4 9 291-299 553-561 (822)
242 PF07530 PRE_C2HC: Associated 72.4 6.6 0.00014 26.8 3.6 63 121-186 2-65 (68)
243 PF10567 Nab6_mRNP_bdg: RNA-re 70.9 9.7 0.00021 33.9 5.2 148 105-253 14-214 (309)
244 KOG1924 RhoA GTPase effector D 68.6 23 0.00049 36.3 7.7 12 157-168 208-219 (1102)
245 KOG4213 RNA-binding protein La 68.5 6.2 0.00013 32.3 3.2 57 107-167 112-169 (205)
246 KOG4410 5-formyltetrahydrofola 68.3 13 0.00028 32.9 5.3 49 105-159 329-378 (396)
247 KOG4019 Calcineurin-mediated s 68.1 4.8 0.0001 33.1 2.5 74 107-186 11-90 (193)
248 smart00596 PRE_C2HC PRE_C2HC d 67.2 9.7 0.00021 25.9 3.4 62 121-185 2-64 (69)
249 TIGR02542 B_forsyth_147 Bacter 67.1 31 0.00068 26.0 6.4 108 113-241 10-130 (145)
250 PF09073 BUD22: BUD22; InterP 66.8 6 0.00013 38.4 3.5 23 331-353 408-430 (432)
251 TIGR01651 CobT cobaltochelatas 66.3 9.2 0.0002 38.0 4.5 16 106-121 295-310 (600)
252 PF02714 DUF221: Domain of unk 65.1 14 0.00029 34.4 5.4 56 151-208 1-56 (325)
253 COG4907 Predicted membrane pro 65.0 15 0.00033 34.9 5.5 12 333-344 526-537 (595)
254 PF15513 DUF4651: Domain of un 63.9 18 0.00038 24.1 4.1 18 121-138 9-26 (62)
255 PF12253 CAF1A: Chromatin asse 62.6 7.1 0.00015 27.3 2.2 6 14-19 44-49 (77)
256 PF03468 XS: XS domain; Inter 62.3 9.9 0.00021 29.2 3.2 50 108-160 10-68 (116)
257 KOG4410 5-formyltetrahydrofola 61.6 23 0.0005 31.4 5.6 47 283-333 331-378 (396)
258 KOG2773 Apoptosis antagonizing 58.1 6.2 0.00013 37.4 1.7 10 289-298 388-397 (483)
259 KOG1999 RNA polymerase II tran 57.7 9.3 0.0002 39.8 3.0 16 290-305 447-462 (1024)
260 COG4907 Predicted membrane pro 56.5 11 0.00023 35.9 2.9 13 334-346 524-536 (595)
261 KOG0262 RNA polymerase I, larg 56.0 10 0.00023 40.6 3.1 6 301-306 1544-1549(1640)
262 KOG1924 RhoA GTPase effector D 55.8 48 0.0011 34.1 7.4 14 118-131 83-96 (1102)
263 KOG1295 Nonsense-mediated deca 54.8 17 0.00037 33.7 3.9 66 282-347 7-77 (376)
264 KOG2295 C2H2 Zn-finger protein 54.6 46 0.00099 32.7 6.8 18 405-422 614-631 (648)
265 KOG4213 RNA-binding protein La 52.8 19 0.00042 29.5 3.5 67 283-354 112-181 (205)
266 KOG0650 WD40 repeat nucleolar 51.9 34 0.00073 33.9 5.5 12 107-118 119-130 (733)
267 COG4547 CobT Cobalamin biosynt 51.9 25 0.00053 33.6 4.5 9 173-181 426-434 (620)
268 KOG3130 Uncharacterized conser 51.8 15 0.00033 34.2 3.1 20 110-129 354-373 (514)
269 KOG4365 Uncharacterized conser 51.8 2.6 5.6E-05 39.4 -1.7 78 283-361 4-83 (572)
270 KOG4364 Chromatin assembly fac 50.6 11 0.00024 37.5 2.2 15 10-24 518-532 (811)
271 PF05918 API5: Apoptosis inhib 50.2 5.3 0.00011 39.6 0.0 8 117-124 189-196 (556)
272 KOG1295 Nonsense-mediated deca 50.0 21 0.00045 33.2 3.7 68 106-173 7-77 (376)
273 KOG4365 Uncharacterized conser 49.9 3.4 7.4E-05 38.7 -1.3 77 107-184 4-80 (572)
274 COG5193 LHP1 La protein, small 49.5 7.8 0.00017 36.0 1.0 61 105-165 173-243 (438)
275 COG5638 Uncharacterized conser 49.5 43 0.00094 31.3 5.6 39 104-142 144-187 (622)
276 TIGR00927 2A1904 K+-dependent 49.0 12 0.00026 39.4 2.2 11 107-117 905-915 (1096)
277 PF09073 BUD22: BUD22; InterP 48.7 23 0.0005 34.4 4.1 6 160-165 322-327 (432)
278 KOG0262 RNA polymerase I, larg 47.7 20 0.00044 38.6 3.6 12 113-124 1448-1459(1640)
279 PF14111 DUF4283: Domain of un 45.8 13 0.00027 30.0 1.6 94 117-217 28-135 (153)
280 KOG4008 rRNA processing protei 45.4 16 0.00035 31.5 2.1 37 101-137 35-71 (261)
281 PTZ00191 60S ribosomal protein 45.1 74 0.0016 25.4 5.6 57 284-341 83-141 (145)
282 TIGR01651 CobT cobaltochelatas 44.3 26 0.00056 35.0 3.6 7 298-304 544-550 (600)
283 PF15513 DUF4651: Domain of un 43.0 57 0.0012 21.7 3.9 19 297-315 9-27 (62)
284 KOG4483 Uncharacterized conser 42.6 1.5E+02 0.0033 27.9 7.9 55 282-341 391-446 (528)
285 PF07530 PRE_C2HC: Associated 40.6 95 0.0021 21.2 4.9 61 297-360 2-65 (68)
286 TIGR00927 2A1904 K+-dependent 40.3 17 0.00038 38.3 1.9 13 148-160 931-943 (1096)
287 PF03896 TRAP_alpha: Transloco 39.1 20 0.00043 32.4 1.9 7 107-113 85-91 (285)
288 KOG1980 Uncharacterized conser 38.6 9.8 0.00021 37.8 -0.1 44 122-165 466-511 (754)
289 PRK14548 50S ribosomal protein 38.6 1.1E+02 0.0024 21.9 5.2 56 109-167 23-80 (84)
290 PF08734 GYD: GYD domain; Int 37.5 1.6E+02 0.0034 21.4 6.1 46 296-343 22-68 (91)
291 PHA03169 hypothetical protein; 36.9 1.3E+02 0.0028 28.0 6.5 8 203-210 303-310 (413)
292 PF05764 YL1: YL1 nuclear prot 36.2 26 0.00056 30.9 2.1 11 195-205 182-192 (240)
293 cd04889 ACT_PDH-BS-like C-term 36.1 1.1E+02 0.0025 19.3 5.1 42 297-339 13-55 (56)
294 PF02714 DUF221: Domain of unk 35.5 40 0.00087 31.2 3.4 36 325-362 1-36 (325)
295 KOG4008 rRNA processing protei 34.8 32 0.00069 29.7 2.3 34 280-313 38-71 (261)
296 PF11823 DUF3343: Protein of u 34.6 1.3E+02 0.0029 20.6 5.1 62 149-212 2-64 (73)
297 KOG2147 Nucleolar protein invo 34.4 69 0.0015 32.8 4.8 31 331-362 694-724 (823)
298 COG5593 Nucleic-acid-binding p 34.2 28 0.00062 33.9 2.1 20 108-127 800-819 (821)
299 KOG1060 Vesicle coat complex A 34.0 77 0.0017 32.8 5.1 8 151-158 772-779 (968)
300 PF11823 DUF3343: Protein of u 33.8 59 0.0013 22.4 3.2 28 323-350 2-29 (73)
301 PF03896 TRAP_alpha: Transloco 33.5 30 0.00065 31.3 2.1 15 284-298 193-207 (285)
302 KOG4264 Nucleo-cytoplasmic pro 33.4 33 0.0007 33.3 2.3 19 150-168 211-229 (694)
303 cd04904 ACT_AAAH ACT domain of 33.1 1.6E+02 0.0035 20.2 5.6 49 296-344 14-65 (74)
304 cd04908 ACT_Bt0572_1 N-termina 32.8 1.5E+02 0.0032 19.6 8.2 49 295-346 14-63 (66)
305 PF15063 TC1: Thyroid cancer p 31.9 20 0.00044 24.7 0.6 50 283-342 26-78 (79)
306 PF14026 DUF4242: Protein of u 30.3 1.9E+02 0.0042 20.2 7.3 61 285-346 3-70 (77)
307 KOG2187 tRNA uracil-5-methyltr 30.0 81 0.0018 31.0 4.4 45 322-366 63-107 (534)
308 PHA03169 hypothetical protein; 29.3 1.6E+02 0.0036 27.4 5.9 14 326-339 370-383 (413)
309 PF08544 GHMP_kinases_C: GHMP 27.9 2.1E+02 0.0045 19.8 6.0 44 297-343 37-80 (85)
310 PF12782 Innate_immun: Inverte 27.5 3E+02 0.0066 23.3 6.7 6 335-340 13-18 (311)
311 PHA02664 hypothetical protein; 27.5 33 0.00071 30.9 1.3 71 16-86 451-521 (534)
312 KOG4264 Nucleo-cytoplasmic pro 27.4 58 0.0013 31.7 2.9 8 324-331 443-450 (694)
313 PF11702 DUF3295: Protein of u 27.4 41 0.00088 32.9 1.9 9 44-52 307-315 (507)
314 PRK11901 hypothetical protein; 26.8 2E+02 0.0044 26.5 6.1 67 100-171 239-307 (327)
315 KOG2192 PolyC-binding hnRNP-K 26.0 2.8E+02 0.0061 24.5 6.5 15 282-296 168-182 (390)
316 KOG0772 Uncharacterized conser 25.8 58 0.0013 31.7 2.6 23 148-170 244-266 (641)
317 cd04883 ACT_AcuB C-terminal AC 25.4 2.1E+02 0.0046 19.0 6.7 51 295-346 14-67 (72)
318 PRK10629 EnvZ/OmpR regulon mod 24.3 3.5E+02 0.0076 21.2 7.4 69 284-358 37-109 (127)
319 PF04202 Mfp-3: Foot protein 3 24.3 1.7E+02 0.0038 19.6 3.8 9 397-405 50-58 (71)
320 cd04882 ACT_Bt0572_2 C-termina 23.9 2.1E+02 0.0045 18.4 5.7 48 297-345 14-62 (65)
321 COG5638 Uncharacterized conser 23.8 2.4E+02 0.0052 26.7 6.0 80 280-359 144-297 (622)
322 PF04959 ARS2: Arsenite-resist 23.3 31 0.00067 29.7 0.3 15 340-354 113-127 (214)
323 KOG2393 Transcription initiati 22.7 73 0.0016 31.2 2.7 17 288-304 479-495 (555)
324 COG5193 LHP1 La protein, small 22.1 42 0.0009 31.5 0.9 58 283-340 175-244 (438)
325 PF00403 HMA: Heavy-metal-asso 21.5 2.4E+02 0.0052 18.2 6.1 54 284-341 1-58 (62)
326 PF03439 Spt5-NGN: Early trans 21.1 2E+02 0.0044 20.4 4.2 35 308-345 33-67 (84)
327 PF04026 SpoVG: SpoVG; InterP 21.1 2.1E+02 0.0046 20.5 4.2 26 132-157 2-27 (84)
328 PF14893 PNMA: PNMA 20.7 92 0.002 29.0 2.8 77 281-361 17-98 (331)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-51 Score=362.56 Aligned_cols=259 Identities=42% Similarity=0.755 Sum_probs=246.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc-CCceEE
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL-KGKTIR 179 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-~g~~l~ 179 (429)
..++.++.|||+.||.++.+++|..+|.+.|+|-.++|.+++.+|.+||||||.|.+++.|+.|++.||+..| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3447889999999999999999999999999999999999999999999999999999999999999999987 499999
Q ss_pred EeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCC
Q 014173 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (429)
Q Consensus 180 v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~ 259 (429)
|..+..+++|||+|||.++++++|++.+++.++.|..|.+...|....++||||||.|.++..|..+.+.|....+.+-+
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHH
Q 014173 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (429)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (429)
..+.|.|+.|....... .....+.|||+||+.++|++.|+++|++||.|.+|+.++ .||||.|.+.++|.+||
T Consensus 238 n~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r------DYaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR------DYAFVHFAEREDAVKAM 310 (506)
T ss_pred CcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc------ceeEEeecchHHHHHHH
Confidence 99999999999888776 558889999999999999999999999999999998885 48999999999999999
Q ss_pred HHhCCceeCCeEEEEEeccCCCCCCCC
Q 014173 340 KDTEKYEIDGQVLEVVLAKPQTDKKTE 366 (429)
Q Consensus 340 ~~l~~~~~~g~~l~v~~a~~~~~~~~~ 366 (429)
+.+||..|+|..|.|.+|++...++..
T Consensus 311 ~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 311 KETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHhcCceecCceEEEEecCChhhhccc
Confidence 999999999999999999998776544
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.2e-46 Score=360.39 Aligned_cols=253 Identities=36% Similarity=0.653 Sum_probs=226.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC-CceEEEe
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCS 181 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 181 (429)
+...++|||+|||+++++++|+++|++||.|..|+|+++ .+++++|||||+|.+.++|.+||+.|++..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 77999999999999999999999999999885 8999999
Q ss_pred ecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCc
Q 014173 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (429)
Q Consensus 182 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (429)
.+...++|||+|||..+++++|.+.|.+++..+..+.+...+....++++||||.|.+..+|..|+..+....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999765666666555455678899999999999999999999887778889999
Q ss_pred ceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhcc--CCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHH
Q 014173 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (429)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (429)
+.|.|+.+....... .....++|||+|||..+++++|+++|++| |.|++|.+++ +||||+|.+.++|.+|+
T Consensus 214 I~VdwA~p~~~~d~~-~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDED-VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeeccccccccc-ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHHH
Confidence 999999886543322 22456899999999999999999999999 9999998753 69999999999999999
Q ss_pred HHhCCceeCCeEEEEEeccCCCCC
Q 014173 340 KDTEKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 340 ~~l~~~~~~g~~l~v~~a~~~~~~ 363 (429)
..||+..|+|+.|+|.|+++....
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999999999999886543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.6e-45 Score=345.48 Aligned_cols=256 Identities=22% Similarity=0.412 Sum_probs=223.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+.++|||+|||+.+|+++|+++|+.||+|..|+|++++.+|+++|||||+|.+.++|.+||..|+|..|.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccC
Q 014173 185 T------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (429)
Q Consensus 185 ~------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 258 (429)
+ .++|||+|||..+++++|+.+|..+|. |..+.++.+. ..+.+++||||.|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~~-~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSDN-VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4 357999999999999999999999998 8888888873 4678899999999999999999999988755544
Q ss_pred CCcceeeecCCCCCCCc---------------------------------------------------------------
Q 014173 259 GNTPTISWADPKSTPDH--------------------------------------------------------------- 275 (429)
Q Consensus 259 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 275 (429)
...+.+.++........
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 45666666543320000
Q ss_pred -----------------------hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeC
Q 014173 276 -----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYA 330 (429)
Q Consensus 276 -----------------------~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~ 330 (429)
+......++|||+|||..+++++|+++|++||.|.+|+|+++..+ . ||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 000011236999999999999999999999999999999988743 3 999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 331 ~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
+.++|.+||..|||..|+||.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999987653
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-42 Score=284.64 Aligned_cols=254 Identities=23% Similarity=0.410 Sum_probs=226.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..+.|.|.-||..+|+++|+.+|...|+|.+|++++|+.+|.+.||+||.|-.+.+|.+|+..|||..|..++|+|++++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccC
Q 014173 185 TK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (429)
Q Consensus 185 ~~------~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 258 (429)
|. .+|||.+||..+|..+|..+|++||. |..-+++.| ..++.++|.+||.|....+|..|++.+++....-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 86 58999999999999999999999999 555566666 56799999999999999999999999999877666
Q ss_pred CCcceeeecCCCCCCCchhh---------------------------------------------------------hcc
Q 014173 259 GNTPTISWADPKSTPDHSAA---------------------------------------------------------ASQ 281 (429)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------~~~ 281 (429)
...+.|.++........... ...
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 67777777644422110000 011
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
..||||.||.+++++.-|+++|.+||.|..|+|+++-.+. ||||||.+.+.++|..||..|||..+++|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 4899999999999999999999999999999999999865 99999999999999999999999999999999999876
Q ss_pred C
Q 014173 360 Q 360 (429)
Q Consensus 360 ~ 360 (429)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.9e-40 Score=330.04 Aligned_cols=254 Identities=26% Similarity=0.464 Sum_probs=222.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+++++++|+++|+.||.|..|+++.+. +|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 34689999999999999999999999999999999885 58899999999999999999999999999999999986543
Q ss_pred C-----------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 014173 185 T-----------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (429)
Q Consensus 185 ~-----------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 253 (429)
. .++|||+|||..+++++|+++|..||. |..+.++++ ..+.+++||||.|.+.++|.+|+..+++.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 2 256999999999999999999999998 999999987 35788999999999999999999999876
Q ss_pred ccccC--CCcceeeecCCCCCCCc------------hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC
Q 014173 254 NFKLD--GNTPTISWADPKSTPDH------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319 (429)
Q Consensus 254 ~~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 319 (429)
.+... ++.+.+.++..+..... ........+|||+||+..+++++|+++|++||.|+.|+|+.+..
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~ 322 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK 322 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC
Confidence 44321 77888877766543311 01123457899999999999999999999999999999998876
Q ss_pred CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 320 GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 320 ~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
+. +|||||+|.+.++|.+|+..|||..|+|++|.|.+|..+..
T Consensus 323 g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 323 GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 66 99999999999999999999999999999999999987643
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.9e-40 Score=327.76 Aligned_cols=251 Identities=27% Similarity=0.483 Sum_probs=224.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC-
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET- 185 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~- 185 (429)
.+|||+|||+++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|.+|+..|++..|.|++|+|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred -------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccC
Q 014173 186 -------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (429)
Q Consensus 186 -------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 258 (429)
..+|||+|||..+++++|+++|+.||. |..|+++.+ ..+.+++||||.|.+.++|..|+..+++. .+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~-i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~ 155 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN-ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLN 155 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCC-cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhccc--Eec
Confidence 257999999999999999999999998 999999887 45778999999999999999999998764 567
Q ss_pred CCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHH
Q 014173 259 GNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337 (429)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~ 337 (429)
++.+.+....+..... .......++|||+|||..+|+++|+++|+.||.|..|.|..+..+. +|||||.|.+.++|.+
T Consensus 156 ~~~i~v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~ 234 (562)
T TIGR01628 156 DKEVYVGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAK 234 (562)
T ss_pred CceEEEeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHH
Confidence 8888887665544332 1122445789999999999999999999999999999999887776 9999999999999999
Q ss_pred HHHHhCCceeC----CeEEEEEeccCCCCC
Q 014173 338 AVKDTEKYEID----GQVLEVVLAKPQTDK 363 (429)
Q Consensus 338 A~~~l~~~~~~----g~~l~v~~a~~~~~~ 363 (429)
|+..|++..|. |+.|.|.++..+..+
T Consensus 235 Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 235 AVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred HHHHhCCcEecccccceeeEeecccChhhh
Confidence 99999999999 999999988765543
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-39 Score=264.79 Aligned_cols=229 Identities=21% Similarity=0.402 Sum_probs=191.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..+||||+||..++|++-|..||.+.|+|..++++.+.. + |...+.- ....+....+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~-------v~wa~~p-------~nQsk~t~~~-------- 61 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K-------VNWATAP-------GNQSKPTSNQ-------- 61 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c-------cccccCc-------ccCCCCcccc--------
Confidence 458999999999999999999999999999999987621 0 0000000 0011111111
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
.-.+||+.|.+.++.+.|++.|.+||+ |..+++++|+ .+++++||+||.|.+..+|+.|+..|+++ .|++|.++.
T Consensus 62 -hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD~-~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IRT 136 (321)
T KOG0148|consen 62 -HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRDM-NTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIRT 136 (321)
T ss_pred -ceeEEehhcchhcchHHHHHHhccccc-cccceEeecc-cCCcccceeEEeccchHHHHHHHHHhCCe--eeccceeec
Confidence 235789999999999999999999999 9999999994 78999999999999999999999999987 678999999
Q ss_pred eecCCCCCCCc----------hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHH
Q 014173 265 SWADPKSTPDH----------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSS 334 (429)
Q Consensus 265 ~~~~~~~~~~~----------~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~ 334 (429)
+|+..+..... .......++|||+||+..+|+++|++.|++||.|..|+|++++ ||+||.|.++++
T Consensus 137 NWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkEa 212 (321)
T KOG0148|consen 137 NWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKEA 212 (321)
T ss_pred cccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchhh
Confidence 99988863321 1223557999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEeccCCCCCCC
Q 014173 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365 (429)
Q Consensus 335 A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 365 (429)
|..||..+|+..|.|+.|++.|.+.......
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 9999999999999999999999988765543
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6.1e-37 Score=296.92 Aligned_cols=242 Identities=22% Similarity=0.261 Sum_probs=203.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh--cCCccCCceEEEee
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIRCSL 182 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~ 182 (429)
++++|||+|||+++++++|+++|++||.|.+|+++++ ++||||+|.+.++|.+|+..+ ++..|.|++|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999753 579999999999999999864 67889999999998
Q ss_pred cCCc------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 014173 183 SETK------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (429)
Q Consensus 183 ~~~~------------------~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (429)
+..+ ..|+|.||++.++++.|+++|+.||. |..+.++++. .+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 15899999999999999999999998 9999887752 2468999999999999
Q ss_pred HHHHHHhccccccCCCcceeeecCCCCC--------------------CC-----------c------------------
Q 014173 245 YSRQKMLNANFKLDGNTPTISWADPKST--------------------PD-----------H------------------ 275 (429)
Q Consensus 245 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~-----------~------------------ 275 (429)
+|+..|++..+.-.+..+.+.|+.+... .. .
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 9999999886654444555555433110 00 0
Q ss_pred ----------------------------------------hhhhcccceEEEccCCC-CCCHHHHHHHHhccCCeeEEEe
Q 014173 276 ----------------------------------------SAAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVM 314 (429)
Q Consensus 276 ----------------------------------------~~~~~~~~~l~v~nlp~-~~te~~L~~~F~~~G~i~~v~i 314 (429)
.....++++|||+|||. .+|+++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 00012457999999997 6999999999999999999999
Q ss_pred cCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 315 PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 315 ~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
+.++ +|||||+|.+.++|..|+..|||..|.|++|+|.+++...
T Consensus 309 ~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 8764 5899999999999999999999999999999999987654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.8e-36 Score=295.02 Aligned_cols=251 Identities=25% Similarity=0.408 Sum_probs=215.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+++++|+++|++||.|..|+|+.+..+++++|||||+|.+.++|.+|| .|+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999999999999999999999999999999 5899999999999987
Q ss_pred cCC------------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 014173 183 SET------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (429)
Q Consensus 183 ~~~------------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (429)
+.. .++|||+|||..+++++|+.+|+.||. |..+.++.++ .++.+++||||.|.+.++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRDP-ETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEcC-CCCccceEEEEEECCHHHHH
Confidence 532 267999999999999999999999998 9999999884 55788999999999999999
Q ss_pred HHHHHHhccccccCCCcceeeecCCCCCCC--------------------------------------------------
Q 014173 245 YSRQKMLNANFKLDGNTPTISWADPKSTPD-------------------------------------------------- 274 (429)
Q Consensus 245 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 274 (429)
.|+..|++ +.+.++.+.|.++.......
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999987 57788999998843210000
Q ss_pred ------------------------------c----hhhhcccceEEEccCCCCCC----------HHHHHHHHhccCCee
Q 014173 275 ------------------------------H----SAAASQVKALYVKNIPDNTS----------TEKIKELFQRHGEVT 310 (429)
Q Consensus 275 ------------------------------~----~~~~~~~~~l~v~nlp~~~t----------e~~L~~~F~~~G~i~ 310 (429)
. .......++|+|.||....+ .++|++.|++||.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 00113457899999965544 268999999999999
Q ss_pred EEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 311 ~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
.|.|..... .|++||+|.++++|.+|++.|||..|+|+.|.|.|....
T Consensus 401 ~v~v~~~~~--~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 401 HIYVDTKNS--AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEEeCCCC--ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 999974432 489999999999999999999999999999999998654
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.8e-36 Score=272.89 Aligned_cols=173 Identities=25% Similarity=0.469 Sum_probs=153.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+++|+++|+++|+.||.|+.|+|+++..|++++|||||+|.+.++|.+|++.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCc
Q 014173 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (429)
Q Consensus 182 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (429)
++.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7653100
Q ss_pred ceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHH
Q 014173 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAV 339 (429)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~ 339 (429)
....++|||+|||..+|+++|+++|++||.|+.|+|++++.+ + ||||||+|.+.++|.+||
T Consensus 190 -----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 190 -----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred -----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 011247999999999999999999999999999999988743 3 899999999999999999
Q ss_pred HHhCCceeCC--eEEEEEeccCCCCCC
Q 014173 340 KDTEKYEIDG--QVLEVVLAKPQTDKK 364 (429)
Q Consensus 340 ~~l~~~~~~g--~~l~v~~a~~~~~~~ 364 (429)
..||+..|.+ ++|+|.++......+
T Consensus 253 ~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHhCCCccCCCceeEEEEECCcccccc
Confidence 9999998866 799999998765443
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.2e-36 Score=269.43 Aligned_cols=251 Identities=25% Similarity=0.483 Sum_probs=219.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
+.||||++||++++.++|.++|+.+|+|..+.++.+..++.+|||+||.|.-.+++++|++.++++.|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred c--------------------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEE
Q 014173 186 K--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 233 (429)
Q Consensus 186 ~--------------------------------~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~ 233 (429)
. -.|+|+|||+.+...+|..+|+.||. |..|.|.+. ..++-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 2 36999999999999999999999998 888888865 334445999
Q ss_pred EEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCchh------------------------------------
Q 014173 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA------------------------------------ 277 (429)
Q Consensus 234 fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 277 (429)
||.|....+|..|+..+++. .|.|+++.|.|+.++..-....
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999765 7889999999987762111000
Q ss_pred ---------------------------------h---------------hcccceEEEccCCCCCCHHHHHHHHhccCCe
Q 014173 278 ---------------------------------A---------------ASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309 (429)
Q Consensus 278 ---------------------------------~---------------~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i 309 (429)
. .....+|||+|||+++|+++|.++|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0 0002789999999999999999999999999
Q ss_pred eEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHh-----CC-ceeCCeEEEEEeccCCC
Q 014173 310 TKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT-----EK-YEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 310 ~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l-----~~-~~~~g~~l~v~~a~~~~ 361 (429)
..+.|+.++.+. +|.|||.|.+..+|..||.+. .| ..|.||.|.|..|-.+.
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 999999888765 999999999999999999987 23 68899999999987654
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.7e-35 Score=283.19 Aligned_cols=242 Identities=17% Similarity=0.258 Sum_probs=204.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC--ceEEEeec
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 183 (429)
..+|||+||++.+|+++|+++|+.||.|.+|.|.++.. +++|||+|.+.++|.+|++.|||..|.+ ++|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 35799999999999999999999999999999987542 4689999999999999999999999865 35665553
Q ss_pred C-------------------------------------------------------------------------------
Q 014173 184 E------------------------------------------------------------------------------- 184 (429)
Q Consensus 184 ~------------------------------------------------------------------------------- 184 (429)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------CcccccccCCCC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChH
Q 014173 185 ----------------------TKNRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (429)
Q Consensus 185 ----------------------~~~~l~v~nl~~-~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~ 241 (429)
+.++|||+||+. .++++.|+++|+.||. |..++++++ .+++|||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 123799999998 6999999999999998 999999886 3689999999999
Q ss_pred HHHHHHHHHhccccccCCCcceeeecCCCCCCCc-------------------------h------hhhcccceEEEccC
Q 014173 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-------------------------S------AAASQVKALYVKNI 290 (429)
Q Consensus 242 ~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~------~~~~~~~~l~v~nl 290 (429)
+|..|+..|++. .+.|+.+.|.++........ . ....++++|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999875 56789999987644311000 0 00124578999999
Q ss_pred CCCCCHHHHHHHHhccCC--eeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeE------EEEEeccCC
Q 014173 291 PDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV------LEVVLAKPQ 360 (429)
Q Consensus 291 p~~~te~~L~~~F~~~G~--i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~------l~v~~a~~~ 360 (429)
|..+++++|+++|+.||. |+.|++.....+++++|||+|.+.++|..||..||++.|.++. |+|+|++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 8899887766556799999999999999999999999999985 999999864
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.5e-35 Score=290.07 Aligned_cols=244 Identities=23% Similarity=0.388 Sum_probs=200.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC------------CCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPI------------GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 172 (429)
..++|||+|||+.+|+++|+++|.++ +.|..+.+ +..+|||||+|.+.++|..|| .|+|..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 46799999999999999999999875 34555554 456899999999999999999 699999
Q ss_pred cCCceEEEeecC-----------------------------------CcccccccCCCCCCCHHHHHHHHHhhCCceeEE
Q 014173 173 LKGKTIRCSLSE-----------------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217 (429)
Q Consensus 173 ~~g~~l~v~~~~-----------------------------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~ 217 (429)
|.|+.|.|.... ..++|||+|||..+++++|+++|+.||. |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999986321 1257999999999999999999999998 9999
Q ss_pred EEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCc----------------------
Q 014173 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH---------------------- 275 (429)
Q Consensus 218 ~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 275 (429)
.++.++ .++.++|||||.|.+...|..|+..|++. .+.++.+.|.++........
T Consensus 326 ~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 999884 57889999999999999999999999765 56788888888643321110
Q ss_pred hhhhcccceEEEccCCCCC----------CHHHHHHHHhccCCeeEEEecCCCC----CC-CcEEEEEeCCHHHHHHHHH
Q 014173 276 SAAASQVKALYVKNIPDNT----------STEKIKELFQRHGEVTKVVMPPGKS----GK-RDFGFIHYAERSSALKAVK 340 (429)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~----~~-kg~afV~F~~~~~A~~A~~ 340 (429)
.....++++|+|.||.... ..++|+++|++||.|+.|.|++... +. +|+|||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 0001246789999996321 1267999999999999999987531 12 6899999999999999999
Q ss_pred HhCCceeCCeEEEEEeccC
Q 014173 341 DTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~~ 359 (429)
.|||..|+|+.|.|.|...
T Consensus 483 ~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HcCCCEECCeEEEEEEeCH
Confidence 9999999999999999764
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.3e-33 Score=270.96 Aligned_cols=160 Identities=23% Similarity=0.451 Sum_probs=144.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+++++|+++|.+||.|.+|+|+.++.|++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CC-----------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHH
Q 014173 184 ET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (429)
Q Consensus 184 ~~-----------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a 246 (429)
.. .++|||+|||+.+++++|+.+|+.||. |..+++.+++ .++.++|||||.|.+.++|..|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D~-~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEecC-CCCCcCCeEEEEECCHHHHHHH
Confidence 31 258999999999999999999999998 9999999985 4678999999999999999999
Q ss_pred HHHHhccccccCCCcceeeec
Q 014173 247 RQKMLNANFKLDGNTPTISWA 267 (429)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~~ 267 (429)
+..|++. .++|+.+.|.++
T Consensus 263 I~amNg~--elgGr~LrV~kA 281 (612)
T TIGR01645 263 IASMNLF--DLGGQYLRVGKC 281 (612)
T ss_pred HHHhCCC--eeCCeEEEEEec
Confidence 9999753 556666665543
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=248.09 Aligned_cols=254 Identities=28% Similarity=0.520 Sum_probs=218.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCC--ceEEEeec
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRCSLS 183 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~~~ 183 (429)
-.|||+-||..++|.+|+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..||+.. |-| .+|.|.++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 459999999999999999999999999999999999999999999999999999999999998765 444 67888887
Q ss_pred CC-------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccc-c
Q 014173 184 ET-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-F 255 (429)
Q Consensus 184 ~~-------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~ 255 (429)
.. .++|||+-|+..+++.+++.+|.+||. |+.|.|++++ .+.+||++||.|.+.+.|..|+++|++.. +
T Consensus 115 d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 115 DGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred chhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheecc--cccccceeEEEEehHHHHHHHHHhhccceee
Confidence 64 467899999999999999999999998 9999999984 58899999999999999999999998653 3
Q ss_pred ccCCCcceeeecCCCCCCCchhhh--------------------------------------------------------
Q 014173 256 KLDGNTPTISWADPKSTPDHSAAA-------------------------------------------------------- 279 (429)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 279 (429)
+-....+.|.|+.+...+......
T Consensus 192 eGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a 271 (510)
T KOG0144|consen 192 EGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNA 271 (510)
T ss_pred ccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcch
Confidence 334456667776665211100000
Q ss_pred ---------------------------------------c---------c------------------------------
Q 014173 280 ---------------------------------------S---------Q------------------------------ 281 (429)
Q Consensus 280 ---------------------------------------~---------~------------------------------ 281 (429)
. .
T Consensus 272 ~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~ 351 (510)
T KOG0144|consen 272 TQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGM 351 (510)
T ss_pred hHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccc
Confidence 0 0
Q ss_pred ------------------------------------------------------------------------cceEEEcc
Q 014173 282 ------------------------------------------------------------------------VKALYVKN 289 (429)
Q Consensus 282 ------------------------------------------------------------------------~~~l~v~n 289 (429)
...|||.+
T Consensus 352 a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyh 431 (510)
T KOG0144|consen 352 AGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYH 431 (510)
T ss_pred ccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeee
Confidence 26699999
Q ss_pred CCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q 014173 290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 290 lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (429)
||-..-+.+|...|.+||.|...++..++.+. +.|+||.|++..+|..||..|||+.|++++|+|.+.+.+...
T Consensus 432 lPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 432 LPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred CchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99999999999999999999999888888776 999999999999999999999999999999999998876543
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-30 Score=238.91 Aligned_cols=242 Identities=25% Similarity=0.457 Sum_probs=217.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCc
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (429)
.+|||+ +++|+..|.++|+++|+|++|+++++. | +.|||||.|.++++|.+|+.++|...++|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999998 6 9999999999999999999999999999999999998764
Q ss_pred -ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceee
Q 014173 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (429)
Q Consensus 187 -~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 265 (429)
..+||.||++.++...|..+|+.||. |.+|++..+... +++| ||.|.+...|.+|+..+++. .+.++.+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 45899999999999999999999999 999999998433 8999 99999999999999999775 5678888887
Q ss_pred ecCCCCCCCchh--hhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHh
Q 014173 266 WADPKSTPDHSA--AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 266 ~~~~~~~~~~~~--~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l 342 (429)
...+........ ....-..++|.|++.+++...|..+|..+|.|..+.++.+..+. ++|+||.|.++++|..|+..|
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhc
Confidence 776665433222 23445789999999999999999999999999999999999887 999999999999999999999
Q ss_pred CCceeCCeEEEEEeccCCC
Q 014173 343 EKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~~ 361 (429)
++..+.+..+.|..+..+.
T Consensus 229 ~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 229 NGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred cCCcCCccceeecccccch
Confidence 9999999999998887643
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-30 Score=239.05 Aligned_cols=252 Identities=29% Similarity=0.503 Sum_probs=219.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+.+.|||.||+++++..+|.++|+.||.|++|++..+.. | ++|| ||+|.+.+.|.+|+..+||..+.+++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 344499999999999999999999999999999999876 5 9999 999999999999999999999999999997754
Q ss_pred C--------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHH
Q 014173 185 T--------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250 (429)
Q Consensus 185 ~--------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l 250 (429)
. -..+++.+++...+...|..+|..+|. |..+.++.+ ..+.+++|+||.|.+.++|..|+..+
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhc
Confidence 3 256899999999999999999999998 999999997 45669999999999999999999999
Q ss_pred hccccccCCCcceeeecCCCCCCCc------------hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC
Q 014173 251 LNANFKLDGNTPTISWADPKSTPDH------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318 (429)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~ 318 (429)
++..+. +..+.+..+........ .........|||.||+..++.+.|+.+|+.||.|..++|..+.
T Consensus 229 ~~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 229 NGKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred cCCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 876543 56666665555322111 1112446789999999999999999999999999999999988
Q ss_pred CCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014173 319 SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (429)
Q Consensus 319 ~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 364 (429)
.+. +||+||.|.+.++|.+|+..+|+..+.++.|.|.++...+.+.
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 887 9999999999999999999999999999999999998555543
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=205.56 Aligned_cols=247 Identities=20% Similarity=0.393 Sum_probs=203.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
-|+|||+.|.+.+.++.||..|..||+|.+|.+..++.|++++|||||+|.-++.|..|++.+||..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred -----------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHH
Q 014173 186 -----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (429)
Q Consensus 186 -----------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~ 248 (429)
-+++||..+.+..++++|+.+|+.||+ |..|.+-+.| .....+||+|++|.+......|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHhh
Confidence 268999999999999999999999998 9999999986 567789999999999999888888
Q ss_pred HHhccccccCCCcceeeecCCCCCC-------------------------------------------------------
Q 014173 249 KMLNANFKLDGNTPTISWADPKSTP------------------------------------------------------- 273 (429)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 273 (429)
.|| -+.++|..++|..+......
T Consensus 271 sMN--lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMN--LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcc--hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 875 34555555544432111000
Q ss_pred ------------------------Cc-hhh--------------------------------------------------
Q 014173 274 ------------------------DH-SAA-------------------------------------------------- 278 (429)
Q Consensus 274 ------------------------~~-~~~-------------------------------------------------- 278 (429)
+. +..
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 00 000
Q ss_pred --------------hcccceEEEccC--CCCCCH---HHHHHHHhccCCeeEEEecCCCCCC------CcEEEEEeCCHH
Q 014173 279 --------------ASQVKALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK------RDFGFIHYAERS 333 (429)
Q Consensus 279 --------------~~~~~~l~v~nl--p~~~te---~~L~~~F~~~G~i~~v~i~~~~~~~------kg~afV~F~~~~ 333 (429)
...++.+.++|+ |.++++ .+|++-|.+||.|.+|.|...+.+. ----||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 000366888887 566655 6799999999999999998777553 124699999999
Q ss_pred HHHHHHHHhCCceeCCeEEEEEe
Q 014173 334 SALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 334 ~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
++.+|+.+|+|++|+|+++....
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHHHHHHhhccceecCceeehhh
Confidence 99999999999999999987644
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.5e-28 Score=219.81 Aligned_cols=234 Identities=23% Similarity=0.401 Sum_probs=192.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.-.|.|+||||.|.+.+|+.+|+.||.|..|.|++.+. |+..|||||+|....+|.+|++.+|+..|.||+|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 45799999999999999999999999999999998877 55559999999999999999999999999999999999542
Q ss_pred c-------------------------------------------------------------------------------
Q 014173 186 K------------------------------------------------------------------------------- 186 (429)
Q Consensus 186 ~------------------------------------------------------------------------------- 186 (429)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 1
Q ss_pred -----------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHH
Q 014173 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (429)
Q Consensus 187 -----------------~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~ 249 (429)
.+|||+|||+.+|++.|...|++||+ |..+.++.++ .+++++|.|||.|.+..++..|+.+
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~k-~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKDK-DTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEecc-CCCCcccceEEEeccHHHHHHHHHh
Confidence 26999999999999999999999998 9999999995 7899999999999999999999988
Q ss_pred Hh---ccc-cccCCCcceeeecCCCCCCCch-------------------------------------------------
Q 014173 250 ML---NAN-FKLDGNTPTISWADPKSTPDHS------------------------------------------------- 276 (429)
Q Consensus 250 l~---~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 276 (429)
.. +.. +.+.|+.+.+..+.++......
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 223 7788999988887665221110
Q ss_pred ------hhhcccceEEEccCCCCCCHHHHHHHHhc----c-CCe-eEEEecCC-----CCCCCcEEEEEeCCHHHHHHHH
Q 014173 277 ------AAASQVKALYVKNIPDNTSTEKIKELFQR----H-GEV-TKVVMPPG-----KSGKRDFGFIHYAERSSALKAV 339 (429)
Q Consensus 277 ------~~~~~~~~l~v~nlp~~~te~~L~~~F~~----~-G~i-~~v~i~~~-----~~~~kg~afV~F~~~~~A~~A~ 339 (429)
..+..-++|.|.|||..++..+|+.|... | +.+ ..|+.+.. ++.+.||+|+.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 00111367899999999999999988864 2 122 23333322 2334799999999999999999
Q ss_pred HHh
Q 014173 340 KDT 342 (429)
Q Consensus 340 ~~l 342 (429)
..+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 865
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=1e-27 Score=224.63 Aligned_cols=250 Identities=22% Similarity=0.354 Sum_probs=207.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...+.|+|+|||..+..++|..+|..||.|..|.+++... .++|.|.++.+|.+|+..|....+...++.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 4558899999999999999999999999999996653211 3999999999999999999998888777776653
Q ss_pred CC--------------------------------------------------------cccccccCCCCCCCHHHHHHHH
Q 014173 184 ET--------------------------------------------------------KNRLFIGNVPKNWTEDEFRKVI 207 (429)
Q Consensus 184 ~~--------------------------------------------------------~~~l~v~nl~~~~t~~~l~~~f 207 (429)
.. .+.|||.||++..|.+.|..+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 20 0239999999999999999999
Q ss_pred HhhCCceeEEEEee--CCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCC---Cchhhhccc
Q 014173 208 EDVGPGVETIELIK--DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP---DHSAAASQV 282 (429)
Q Consensus 208 ~~~G~~v~~~~~~~--d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 282 (429)
...|. |..+.|.. +|.....+.|||||.|.+.++|..|++.|++ ..+.|+.+.+.++...... .........
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg--tvldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG--TVLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC--ceecCceEEEEeccCcccccccccccccccc
Confidence 99998 77766654 4444567889999999999999999999974 4788999999988722111 111112335
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC--CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
..|+|+|||+..+-.+|+.+|..||.|..|+|+..... ++|||||.|-++.+|.+|+.+|..+.+-||+|.+.||...
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 79999999999999999999999999999999987332 2999999999999999999999999999999999999876
Q ss_pred CC
Q 014173 361 TD 362 (429)
Q Consensus 361 ~~ 362 (429)
..
T Consensus 694 ~~ 695 (725)
T KOG0110|consen 694 NT 695 (725)
T ss_pred hH
Confidence 54
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=1.5e-26 Score=222.49 Aligned_cols=174 Identities=24% Similarity=0.482 Sum_probs=149.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceee
Q 014173 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (429)
Q Consensus 186 ~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 265 (429)
.++|||+|||+.+++++|+.+|..||+ |..+.++.++ .+++++|||||.|.+.++|..|+..|++. .+.|+.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 468999999999999999999999998 9999999984 56889999999999999999999999764 6789999888
Q ss_pred ecCCCCCCCc-----hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHH
Q 014173 266 WADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (429)
Q Consensus 266 ~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A 338 (429)
+......... .......++|||+|||..+++++|+++|+.||.|..|+|.++..+. ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543321111 0111345799999999999999999999999999999999887553 99999999999999999
Q ss_pred HHHhCCceeCCeEEEEEeccCCCCC
Q 014173 339 VKDTEKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 339 ~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (429)
+..||+..|+|+.|+|.++..+...
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999999999999999875543
No 22
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=1.5e-27 Score=217.68 Aligned_cols=249 Identities=26% Similarity=0.413 Sum_probs=211.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....+|||+--|+..+++-+|.+||+.+|+|..|+++.+..+++++|.|||+|.+..+...|+ .|.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 346689999999999999999999999999999999999999999999999999999999999 8999999999999987
Q ss_pred cCC--------------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHH
Q 014173 183 SET--------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242 (429)
Q Consensus 183 ~~~--------------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~ 242 (429)
+.. -..|||+||.+++++..|+.+|+.||. |..|.+.+| ..++.++||+|++|.+.++
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKED 332 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHH
Confidence 432 134899999999999999999999998 999999998 3589999999999999999
Q ss_pred HHHHHHHHhccccccCCCcceeeecCCCCCCC------------------------------------------------
Q 014173 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPD------------------------------------------------ 274 (429)
Q Consensus 243 a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 274 (429)
|.+|+..|++ +.+-|+.+.|....-.....
T Consensus 333 ar~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~ 410 (549)
T KOG0147|consen 333 ARKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALL 410 (549)
T ss_pred HHHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHH
Confidence 9999999987 88888888766432110000
Q ss_pred ------------------chhhh-------cccceEEEccCCCCCCH----------HHHHHHHhccCCeeEEEecCCCC
Q 014173 275 ------------------HSAAA-------SQVKALYVKNIPDNTST----------EKIKELFQRHGEVTKVVMPPGKS 319 (429)
Q Consensus 275 ------------------~~~~~-------~~~~~l~v~nlp~~~te----------~~L~~~F~~~G~i~~v~i~~~~~ 319 (429)
...+. .++.|+.+.|+-...|+ ++|.+-|.+||.|..|.+.++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 411 LLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA 490 (549)
T ss_pred hccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC
Confidence 00001 23456777777433222 67889999999999999977664
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 320 ~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
|+.||.|.+.+.|..|+.+|||.+|.|+.|.+.|-..
T Consensus 491 ---g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 491 ---GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred ---ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 7999999999999999999999999999999998753
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.2e-27 Score=209.55 Aligned_cols=173 Identities=25% Similarity=0.456 Sum_probs=149.6
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcccc-ccCCCcceee
Q 014173 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTIS 265 (429)
Q Consensus 187 ~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-~~~~~~~~~~ 265 (429)
-++||+.+|+.|++.+|+.+|++||. |..|.+++| +.++.++++|||.|.+..+|..|..++++... .-....+.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 36999999999999999999999998 999999999 57789999999999999999999999987643 2334555666
Q ss_pred ecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCC
Q 014173 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEK 344 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~ 344 (429)
++....... ...++|||+-|++.+|+.+|+.+|++||.|++|.|+++..+. ||||||+|.+.+.|..||+.|||
T Consensus 113 ~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 113 YADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 665554322 335799999999999999999999999999999999999887 99999999999999999999998
Q ss_pred c-eeCCe--EEEEEeccCCCCCCCC
Q 014173 345 Y-EIDGQ--VLEVVLAKPQTDKKTE 366 (429)
Q Consensus 345 ~-~~~g~--~l~v~~a~~~~~~~~~ 366 (429)
. ++.|+ +|.|+||..+..+...
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred ceeeccCCCceEEEecccCCCchHH
Confidence 6 66665 8999999988765433
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=7.7e-26 Score=188.11 Aligned_cols=157 Identities=31% Similarity=0.602 Sum_probs=146.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
-.-|||+.|.+.++-+.|++.|.+||+|.++++++|.+|+++|||+||.|.++++|+.||..|+|..|.+|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred c----------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHH
Q 014173 186 K----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (429)
Q Consensus 186 ~----------------------~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a 243 (429)
+ +++|++|++..++++.||+.|+.||+ |..|++.++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 3 68999999999999999999999999 999999997 89999999999999
Q ss_pred HHHHHHHhccccccCCCcceeeecCCCCC
Q 014173 244 DYSRQKMLNANFKLDGNTPTISWADPKST 272 (429)
Q Consensus 244 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 272 (429)
..|+-.+++. .+.|..+++.|.+....
T Consensus 214 ahAIv~mNnt--ei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNT--EIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCc--eeCceEEEEeccccCCC
Confidence 9999999775 78899999999876544
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=6.2e-26 Score=177.87 Aligned_cols=171 Identities=23% Similarity=0.373 Sum_probs=150.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
...||||+||+..++++-|.++|-+.|+|+++++++++.+...+|||||+|.+.++|.-|++-|+...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999889999999997664
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
.... ++
T Consensus 88 ~~~~-----------------------------------------------------------------nl--------- 93 (203)
T KOG0131|consen 88 AHQK-----------------------------------------------------------------NL--------- 93 (203)
T ss_pred cccc-----------------------------------------------------------------cc---------
Confidence 1100 00
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEE-EecCCCCCC--CcEEEEEeCCHHHHHHHHHH
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ 341 (429)
..+.+|||+||.+.+++..|.+.|+.||.|... .|+++..+. +|||||.|.+.+.+.+|+..
T Consensus 94 ---------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 94 ---------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ---------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 112479999999999999999999999988765 777777643 89999999999999999999
Q ss_pred hCCceeCCeEEEEEeccCCCCCC
Q 014173 342 TEKYEIDGQVLEVVLAKPQTDKK 364 (429)
Q Consensus 342 l~~~~~~g~~l~v~~a~~~~~~~ 364 (429)
+||..++.++|+|.++..+..++
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hccchhcCCceEEEEEEecCCCc
Confidence 99999999999999998765544
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=1.7e-24 Score=204.06 Aligned_cols=167 Identities=22% Similarity=0.455 Sum_probs=148.3
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
++.+|||+|||..+++++|+++|+.+|+ |..|++++++ .++.++|||||.|.+.++|..|+..|++ ..+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d~-~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRDK-VTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEcC-CCCccceEEEEEECcHHHHHHHHhhccc--EEECCeeEEE
Confidence 4678999999999999999999999998 9999999984 5688999999999999999999999976 4678999999
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHh
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l 342 (429)
.++.+.... ...++|||+|||..+++++|+.+|++||.|..++++.+... . +|||||+|.+.++|..|+..|
T Consensus 78 ~~a~~~~~~------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 78 SYARPSSDS------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred Eeecccccc------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 998776432 23568999999999999999999999999999998877633 3 899999999999999999999
Q ss_pred CCceeCC--eEEEEEeccCCC
Q 014173 343 EKYEIDG--QVLEVVLAKPQT 361 (429)
Q Consensus 343 ~~~~~~g--~~l~v~~a~~~~ 361 (429)
||..+.| ++|.|.|+..+.
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCccCCCceeEEEEECCCCC
Confidence 9998877 678999987665
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=2.3e-24 Score=207.28 Aligned_cols=193 Identities=20% Similarity=0.352 Sum_probs=157.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEee-cCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCceEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMK-DKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (429)
...++|||+|||+++|+++|.++|++++. ++.+.+.. ...+++++|||||+|.+.++|..|+..|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35689999999999999999999999863 44444433 334568899999999999999999988864 357899999
Q ss_pred EeecCCc-----------ccccccCCCCCCCHHHHHHHHHhh--CCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHH
Q 014173 180 CSLSETK-----------NRLFIGNVPKNWTEDEFRKVIEDV--GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (429)
Q Consensus 180 v~~~~~~-----------~~l~v~nl~~~~t~~~l~~~f~~~--G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a 246 (429)
|.++.+. ++|||+||+..+++++|+++|+.| |. |..|.+++ +||||.|.+.++|.+|
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~r---------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKIR---------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEeec---------CeEEEEeCCHHHHHHH
Confidence 9998753 569999999999999999999999 87 88887653 5999999999999999
Q ss_pred HHHHhccccccCCCcceeeecCCCCCCCc----------------------hhhhcccceEEEccCCCCCCHHHHHHHHh
Q 014173 247 RQKMLNANFKLDGNTPTISWADPKSTPDH----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (429)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~te~~L~~~F~ 304 (429)
+..|++. .+.++.+.|.|+.+...... ........+++++|+++.+++.-|+.+|.
T Consensus 286 i~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 286 MDELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 9999765 67899999999987643200 00112467899999999999999998888
Q ss_pred ccCC
Q 014173 305 RHGE 308 (429)
Q Consensus 305 ~~G~ 308 (429)
.+|.
T Consensus 364 ~~g~ 367 (578)
T TIGR01648 364 MPGP 367 (578)
T ss_pred cCcc
Confidence 7753
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.1e-24 Score=210.36 Aligned_cols=172 Identities=19% Similarity=0.389 Sum_probs=146.3
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcce
Q 014173 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (429)
Q Consensus 184 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (429)
...++|||+|||..+++.+|+.+|+++|. |..|.++.+ ..++.++|||||.|.+.++|.+|+. ++ ...+.++.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~--g~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LT--GQMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hC--CCEECCeeeE
Confidence 34678999999999999999999999997 999999998 4678899999999999999999986 44 3467788888
Q ss_pred eeecCCCCCCCc------hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHH
Q 014173 264 ISWADPKSTPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSA 335 (429)
Q Consensus 264 ~~~~~~~~~~~~------~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A 335 (429)
+.+......... .......++|||+|||..+++++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 876543322111 111133689999999999999999999999999999999988765 3 89999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEeccCC
Q 014173 336 LKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 336 ~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
.+|+..|||..|.|+.|+|.|+...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCC
Confidence 9999999999999999999998743
No 29
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=8.6e-24 Score=187.04 Aligned_cols=144 Identities=26% Similarity=0.464 Sum_probs=127.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhh-ccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLC-EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..+.+||.|||+++.+++|++|| .+.|+|..|.|+.+.. |++||||.|+|++++.+++|++.||...|.||+|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 33569999999999999999999 5688999999999975 999999999999999999999999999999999999763
Q ss_pred CC------------------------------------------------------------------------------
Q 014173 184 ET------------------------------------------------------------------------------ 185 (429)
Q Consensus 184 ~~------------------------------------------------------------------------------ 185 (429)
..
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 21
Q ss_pred -------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhc
Q 014173 186 -------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (429)
Q Consensus 186 -------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 252 (429)
...+||.||...+....|.+.|.-.|. ++.+.+-.+. -+.+++++.++|.++-.|-.++..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~idK--eG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSIDK--EGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeecc--ccccCCeeEEEecchHHHHHHHHhhcc
Confidence 025789999999999999999999998 9999888874 357889999999999999988888764
No 30
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=7.4e-25 Score=184.16 Aligned_cols=153 Identities=29% Similarity=0.551 Sum_probs=140.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCcc
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 187 (429)
.|||+|||..+++.+|+.+|++||+|++|.|+++ ||||...+...|..|+..||+-.|+|..|.|..++.++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5999999999999999999999999999999876 89999999999999999999999999999998776432
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeec
Q 014173 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (429)
Q Consensus 188 ~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 267 (429)
T Consensus 76 -------------------------------------------------------------------------------- 75 (346)
T KOG0109|consen 76 -------------------------------------------------------------------------------- 75 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee
Q 014173 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (429)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~ 347 (429)
..+.+|+|+||.+.++..+|+..|.+||.|..+.|++ +|+||.|.-.++|..|++.|+++.|
T Consensus 76 ------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 76 ------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred ------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhccccccc
Confidence 2235899999999999999999999999999999976 6899999999999999999999999
Q ss_pred CCeEEEEEeccCCCCCCCC
Q 014173 348 DGQVLEVVLAKPQTDKKTE 366 (429)
Q Consensus 348 ~g~~l~v~~a~~~~~~~~~ 366 (429)
.|++++|.++.++.+....
T Consensus 138 ~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred ccceeeeeeeccccccCCC
Confidence 9999999999988766544
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.92 E-value=5.2e-23 Score=185.62 Aligned_cols=246 Identities=17% Similarity=0.260 Sum_probs=186.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.......|.+++|||++|+++|.+||+.++ |.++.+.+. +|+..|-|||+|.+.+++++||+ ++...+..+.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 445667899999999999999999999995 777766664 59999999999999999999995 58888889999997
Q ss_pred ecCC-----------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 014173 182 LSET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (429)
Q Consensus 182 ~~~~-----------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (429)
.+.. ...|.++.||+.+|+++|.++|+..-.+-..+.++.++ .+++.+-|||+|.+.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~--rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ--RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC--CCCcccceEEEecCHHHHH
Confidence 7642 23578899999999999999999876522335566664 4568999999999999999
Q ss_pred HHHHHHhccccccCCCcceeeec-----------------------------------CCCC------------------
Q 014173 245 YSRQKMLNANFKLDGNTPTISWA-----------------------------------DPKS------------------ 271 (429)
Q Consensus 245 ~a~~~l~~~~~~~~~~~~~~~~~-----------------------------------~~~~------------------ 271 (429)
+|+..... .|..+-+.+..+ ..+.
T Consensus 160 ~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 160 IALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 99876432 222322222110 0000
Q ss_pred -----------------------CC---Cc--------hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCC
Q 014173 272 -----------------------TP---DH--------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317 (429)
Q Consensus 272 -----------------------~~---~~--------~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~ 317 (429)
.. .+ .........+..++||+..+..++..+|+..- ...|.|...
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~-p~~v~i~ig 315 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLN-PYRVHIEIG 315 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCC-ceeEEEEeC
Confidence 00 00 00000126789999999999999999999863 347888878
Q ss_pred CCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 318 KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 318 ~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
.+++ .|-|+|+|.|+++|..|+.+ ++..+..+.|.+....
T Consensus 316 ~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 316 PDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred CCCccCCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 8887 89999999999999999985 7778888888876654
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.1e-23 Score=182.12 Aligned_cols=188 Identities=26% Similarity=0.425 Sum_probs=156.7
Q ss_pred cCHHHHHHHHHHhcCCccCCceEEEeecCC----------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEE
Q 014173 156 RSKEFAKKAIDELHSKELKGKTIRCSLSET----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219 (429)
Q Consensus 156 ~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~----------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~ 219 (429)
.+.+.|.++|..-. |..|.|..... .+.|||+.||..+.+++|.-+|++.|+ |..+++
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRL 115 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRL 115 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEEE
Confidence 34778888885533 44555554332 378999999999999999999999998 999999
Q ss_pred eeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHH
Q 014173 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKI 299 (429)
Q Consensus 220 ~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L 299 (429)
++|| .++.+||||||.|.+.+.|+.|++.+++..++ .|+.+.|..+ ...++|||+|||...++++|
T Consensus 116 MmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~S------------van~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 116 MMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVS------------VANCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred eecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEe------------eecceeEeccCCccccHHHH
Confidence 9995 78999999999999999999999999887655 6777877765 44589999999999999999
Q ss_pred HHHHhccC-CeeEEEecCCCCC--C-CcEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEEeccCCCCC
Q 014173 300 KELFQRHG-EVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKY--EIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 300 ~~~F~~~G-~i~~v~i~~~~~~--~-kg~afV~F~~~~~A~~A~~~l~~~--~~~g~~l~v~~a~~~~~~ 363 (429)
.+.|++.+ .|++|.+...... + ||||||+|.++..|..|.++|-.. ++.|+.+.|.||.+....
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 99999987 6777777654432 2 999999999999999999887643 678999999999988764
No 33
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=1.4e-23 Score=185.86 Aligned_cols=176 Identities=26% Similarity=0.515 Sum_probs=149.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..+.|||++|+|+++++.|+.+|.+||+|..|.+.+++.+++++||+||+|.+.+...++|. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56889999999999999999999999999999999999999999999999999999998883 45566777777665554
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
+..
T Consensus 84 ~r~----------------------------------------------------------------------------- 86 (311)
T KOG4205|consen 84 SRE----------------------------------------------------------------------------- 86 (311)
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 321
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHh
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l 342 (429)
...........++|||++||..+++++|+++|.+||.|..+.++.+.... +||+||.|.+.+.+.+++. .
T Consensus 87 -------~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 87 -------DQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred -------cccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 11111111245799999999999999999999999999999888888665 9999999999999999997 5
Q ss_pred CCceeCCeEEEEEeccCCCCCCCC
Q 014173 343 EKYEIDGQVLEVVLAKPQTDKKTE 366 (429)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~~~~~~~ 366 (429)
.-+.|+++.|.|..|.++......
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ceeeecCceeeEeeccchhhcccc
Confidence 888999999999999998876544
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=173.89 Aligned_cols=171 Identities=25% Similarity=0.467 Sum_probs=153.0
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcce
Q 014173 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (429)
Q Consensus 184 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (429)
..+.+|+|.=||..+|+++++.+|...|+ |++|++++| ..++.+-||+||.|-++.+|.+|+..+++ +++..+++.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 34678999999999999999999999999 999999999 58899999999999999999999999976 578899999
Q ss_pred eeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHH
Q 014173 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~ 341 (429)
|+++.|.... .....|||.+||..+|..+|.++|++||.|..-+|+.+..+. ||.+||.|+...+|..||..
T Consensus 115 VSyARPSs~~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDS------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhh------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 9999988764 344689999999999999999999999999888877777554 99999999999999999999
Q ss_pred hCCceeCCe--EEEEEeccCCCCCC
Q 014173 342 TEKYEIDGQ--VLEVVLAKPQTDKK 364 (429)
Q Consensus 342 l~~~~~~g~--~l~v~~a~~~~~~~ 364 (429)
|||..-.|+ +|.|.||..+....
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCccccc
Confidence 999987765 89999998775543
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.4e-21 Score=193.20 Aligned_cols=168 Identities=16% Similarity=0.309 Sum_probs=132.2
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhh-----------CCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhc
Q 014173 184 ETKNRLFIGNVPKNWTEDEFRKVIEDV-----------GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (429)
Q Consensus 184 ~~~~~l~v~nl~~~~t~~~l~~~f~~~-----------G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 252 (429)
...++|||+|||+.+|+++|..+|..+ +..|..+.+ ...++||||+|.+.++|..|+. |++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 345789999999999999999999986 222333333 3458899999999999999984 654
Q ss_pred cccccCCCcceeeecCCCCCCC-----------------------chhhhcccceEEEccCCCCCCHHHHHHHHhccCCe
Q 014173 253 ANFKLDGNTPTISWADPKSTPD-----------------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309 (429)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i 309 (429)
+.+.|..+.+.+........ ........++|||+|||..+++++|+++|+.||.|
T Consensus 245 --~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 245 --IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred --eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 45667777765432211000 00011335799999999999999999999999999
Q ss_pred eEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 310 TKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 310 ~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
..+.|+.+..+ . +|||||+|.+.++|..||..|||..|.|+.|.|.++....
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999887643 3 8999999999999999999999999999999999997543
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=162.93 Aligned_cols=263 Identities=21% Similarity=0.347 Sum_probs=166.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCC--ce
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KT 177 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g--~~ 177 (429)
++....+.|||+-|...-.|++++.+|..||.|.+|.+.+... |.+||||||.|.+..+|..||..|||.. +-| ..
T Consensus 14 srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 14 SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 3344567899999999999999999999999999999999876 9999999999999999999999999875 444 57
Q ss_pred EEEeecCCccc---------------------------------------ccccC----CCCCCCH----HHHHHHHHhh
Q 014173 178 IRCSLSETKNR---------------------------------------LFIGN----VPKNWTE----DEFRKVIEDV 210 (429)
Q Consensus 178 l~v~~~~~~~~---------------------------------------l~v~n----l~~~~t~----~~l~~~f~~~ 210 (429)
|.|.++...+. +.-.+ |.+.++. -++...+...
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 88888875421 00001 1111111 0111112211
Q ss_pred CC---ceeEEEEeeCCC------CCCCCc-----cE-EEEEecChHHHHHHHHHHhccccccCCC---------------
Q 014173 211 GP---GVETIELIKDPQ------NPSRNR-----GF-SFVLYYNNACADYSRQKMLNANFKLDGN--------------- 260 (429)
Q Consensus 211 G~---~v~~~~~~~d~~------~~~~~~-----g~-~fv~f~~~~~a~~a~~~l~~~~~~~~~~--------------- 260 (429)
|- +|....-...|. ..+.+. +| +...+.+...|..++....-..+.....
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 11 011110000000 001111 11 1122222222222222111111100000
Q ss_pred ----------cceeeecCCC-CCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEE
Q 014173 261 ----------TPTISWADPK-STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFI 327 (429)
Q Consensus 261 ----------~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV 327 (429)
.+...+..+. .-.......+..++|||..||....+.+|.+.|-+||.|++.+++.|+-++ |+|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 0000000000 001111122456999999999999999999999999999988887777554 999999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCC
Q 014173 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (429)
Q Consensus 328 ~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 364 (429)
.|+++.+|..||..|||+.|+-++|+|.+.+++...+
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 9999999999999999999999999999999886543
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.85 E-value=4.8e-20 Score=151.20 Aligned_cols=207 Identities=18% Similarity=0.346 Sum_probs=152.2
Q ss_pred CCEEEEcCCCCCCCHHHHHH----hhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 106 GSEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~----~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
..||||.||+..+..++|+. +|++||.|..|...+. .+.+|-|||.|.+.+.|..|+..|+|..+.|++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999998 9999999999988764 6789999999999999999999999999999999999
Q ss_pred ecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCc
Q 014173 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (429)
Q Consensus 182 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (429)
+++.++.++...-+..+..+ ......++.+.+.. ...++.... .
T Consensus 86 yA~s~sdii~~~~~~~v~~~----------~k~~~~~~~~~~~~----------------------~~~ng~~~~----~ 129 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKE----------KKINGEILARIKQP----------------------LDTNGHFYN----M 129 (221)
T ss_pred cccCccchhhccCceecccc----------CccccccccccCCc----------------------ccccccccc----c
Confidence 99988776554322111111 00111111100000 000000000 0
Q ss_pred ceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
.......+. . .....+...||+.|||..++.+.|..+|.+|...+.|+++.... +.|||+|.+...|..|...
T Consensus 130 ~~~~~p~p~---~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 130 NRMNLPPPF---L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred ccccCCCCc---c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhhh
Confidence 011111111 0 22236678999999999999999999999999999999987663 7999999999999999999
Q ss_pred hCCceeC-CeEEEEEecc
Q 014173 342 TEKYEID-GQVLEVVLAK 358 (429)
Q Consensus 342 l~~~~~~-g~~l~v~~a~ 358 (429)
|.+..|- ...++|.++.
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9999887 8889988875
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=3.8e-20 Score=162.89 Aligned_cols=245 Identities=24% Similarity=0.305 Sum_probs=188.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCceEE
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (429)
...+++.|.+||||+++++.+|..++.+||+|..+.+.+-++ -||++|.+.++|...+..... -.+.|++|.
T Consensus 24 ~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~y 97 (492)
T KOG1190|consen 24 MAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIY 97 (492)
T ss_pred ccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCccee
Confidence 334778999999999999999999999999999999877432 699999999999874432222 235677777
Q ss_pred EeecCCc----------------------------------------------ccccccCCCCCCCHHHHHHHHHhhCCc
Q 014173 180 CSLSETK----------------------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPG 213 (429)
Q Consensus 180 v~~~~~~----------------------------------------------~~l~v~nl~~~~t~~~l~~~f~~~G~~ 213 (429)
|.++... -.++|.++-+.++-+-|..+|+.||..
T Consensus 98 iq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~V 177 (492)
T KOG1190|consen 98 IQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFV 177 (492)
T ss_pred ehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhccee
Confidence 7664311 146788899999999999999999984
Q ss_pred eeEEEEeeCCCCCCCCccE-EEEEecChHHHHHHHHHHhccccccCCCcceeeecCCC------------------CCCC
Q 014173 214 VETIELIKDPQNPSRNRGF-SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK------------------STPD 274 (429)
Q Consensus 214 v~~~~~~~d~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~ 274 (429)
...+.+-+ +.+| |+|+|.+...|..|..+|.++.+.-+..++++.++.-. ....
T Consensus 178 lKIiTF~K-------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~g 250 (492)
T KOG1190|consen 178 LKIITFTK-------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVG 250 (492)
T ss_pred EEEEEEec-------ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCC
Confidence 44444433 3344 88999999999999999998887666666655543211 0000
Q ss_pred ---------------------------------------chhhhcccceEEEccCC-CCCCHHHHHHHHhccCCeeEEEe
Q 014173 275 ---------------------------------------HSAAASQVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVM 314 (429)
Q Consensus 275 ---------------------------------------~~~~~~~~~~l~v~nlp-~~~te~~L~~~F~~~G~i~~v~i 314 (429)
.......+..|.|.||- ..+|.+.|..+|+-||.|.+|+|
T Consensus 251 d~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVki 330 (492)
T KOG1190|consen 251 DGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKI 330 (492)
T ss_pred ccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEe
Confidence 00000013678888885 88999999999999999999999
Q ss_pred cCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 315 PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 315 ~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
+..+. --|.|+|.+...|.-|+..|+|+.|.|++|+|.+++-..-
T Consensus 331 l~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 331 LYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred eecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 98774 4799999999999999999999999999999999986544
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.3e-19 Score=145.32 Aligned_cols=82 Identities=18% Similarity=0.409 Sum_probs=75.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|.+||.|.+|.|+.+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345789999999999999999999999999999998877543 999999999999999999999999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 8653
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=5.5e-20 Score=173.11 Aligned_cols=159 Identities=28% Similarity=0.476 Sum_probs=141.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+|||.||++++|.++|..+|...|.|.++.|...+.. -.+.|||||+|.++++|..|++.|+|+.|+|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999998776542 2466999999999999999999999999999999999987
Q ss_pred C---------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHH
Q 014173 185 T---------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (429)
Q Consensus 185 ~---------------~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~ 249 (429)
. ...|+|+|||+..+..+++.+|..||. +..|+++.. ...+.++|||||.|.++..|..|+.+
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGq-lksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQ-LKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccc-eeeeccchh-hcchhhccceeeeccCcHHHHHHHHh
Confidence 1 147999999999999999999999998 999999886 45677899999999999999999999
Q ss_pred HhccccccCCCcceeeecCCC
Q 014173 250 MLNANFKLDGNTPTISWADPK 270 (429)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~ 270 (429)
|. ...+.|+.+-+.|+...
T Consensus 675 l~--STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 675 LG--STHLYGRRLVLEWAKSD 693 (725)
T ss_pred hc--ccceechhhheehhccc
Confidence 97 55677899988888654
No 41
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=9.2e-20 Score=158.12 Aligned_cols=172 Identities=24% Similarity=0.487 Sum_probs=151.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeee
Q 014173 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (429)
Q Consensus 187 ~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 266 (429)
+++||+.+.+.+.++.||..|..||+ |.++.+.+|| .+++.++|+||+|.-++.|.-|+..||+. .++|+.+.|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 68999999999999999999999998 9999999996 67999999999999999999999999876 67899999986
Q ss_pred cCCCCCCCch-----hhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHH
Q 014173 267 ADPKSTPDHS-----AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAV 339 (429)
Q Consensus 267 ~~~~~~~~~~-----~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~ 339 (429)
...-....+. .....-++|||..+.+++++++|+.+|..||.|++|.+.+...++ |||+||+|.+..+...|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 5444333221 112345899999999999999999999999999999999988765 999999999999999999
Q ss_pred HHhCCceeCCeEEEEEeccCCCC
Q 014173 340 KDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 340 ~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
..||-+.++|..|+|-.+-.+..
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred hhcchhhcccceEecccccCCCc
Confidence 99999999999999988765544
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.80 E-value=4.9e-18 Score=146.82 Aligned_cols=207 Identities=21% Similarity=0.353 Sum_probs=147.7
Q ss_pred hcCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCe--------EEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 014173 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDV--------FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (429)
Q Consensus 99 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i--------~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 170 (429)
....+...+.|||.|||.++|.+++.++|++||-| -.|+|.++.. |..+|-|.+.|...+++..|+..|++
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCc
Confidence 33456677889999999999999999999999977 4688999877 99999999999999999999999999
Q ss_pred CccCCceEEEeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHH
Q 014173 171 KELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250 (429)
Q Consensus 171 ~~~~g~~l~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l 250 (429)
..|.|++|+|..|+- +..|. - + .+.+.++ ...-.+-+..+
T Consensus 206 ~~~rg~~~rVerAkf----------------------q~Kge-~-------~--~~~k~k~--------k~~~~kk~~k~ 245 (382)
T KOG1548|consen 206 DELRGKKLRVERAKF----------------------QMKGE-Y-------D--ASKKEKG--------KCKDKKKLKKQ 245 (382)
T ss_pred ccccCcEEEEehhhh----------------------hhccC-c-------C--ccccccc--------ccccHHHHHHH
Confidence 999999999998862 21121 0 0 0000000 00000011111
Q ss_pred hccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCC----CCCC-------HHHHHHHHhccCCeeEEEecCCCC
Q 014173 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP----DNTS-------TEKIKELFQRHGEVTKVVMPPGKS 319 (429)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp----~~~t-------e~~L~~~F~~~G~i~~v~i~~~~~ 319 (429)
....+ .|.... .........++|.|.||- ...+ .++|++-+.+||.|.+|.|...++
T Consensus 246 q~k~~---------dw~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hP 313 (382)
T KOG1548|consen 246 QQKLL---------DWRPDR---DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHP 313 (382)
T ss_pred HHhhc---------ccCCCc---cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCC
Confidence 11101 111111 111122556899999984 2233 256777899999999999986554
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 320 GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 320 ~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
. |.+-|.|.+.++|..||+.|+|+.|+||.|..++...+
T Consensus 314 d--GvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 314 D--GVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred C--ceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 4 89999999999999999999999999999998876543
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.3e-17 Score=131.30 Aligned_cols=181 Identities=20% Similarity=0.326 Sum_probs=134.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||.++.+.+|.++|.+||.|..|.|... -....||||+|.++.+|..|+..-+|..+.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999998554 235679999999999999999999999999999999998
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcce
Q 014173 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (429)
Q Consensus 184 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (429)
...+.- ...++ .+.-.++-
T Consensus 81 rggr~s-------------------------------------~~~~G----------------------~y~gggrg-- 99 (241)
T KOG0105|consen 81 RGGRSS-------------------------------------SDRRG----------------------SYSGGGRG-- 99 (241)
T ss_pred cCCCcc-------------------------------------ccccc----------------------ccCCCCCC--
Confidence 743210 00000 00000000
Q ss_pred eeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 014173 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~ 343 (429)
.+ ......-..+......|.|.+||.+.+|++|+++..+.|.|....+.++ |++.|+|...++.+-|+..|.
T Consensus 100 -Gg--g~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 -GG--GGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred -CC--CCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhc
Confidence 00 0000000111134468999999999999999999999999999888776 489999999999999999999
Q ss_pred CceeC--CeEEEEEe
Q 014173 344 KYEID--GQVLEVVL 356 (429)
Q Consensus 344 ~~~~~--g~~l~v~~ 356 (429)
...+. |-...+.+
T Consensus 172 ~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 172 DQKFRSEGETAYIRV 186 (241)
T ss_pred cccccCcCcEeeEEe
Confidence 87664 44444433
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=8e-18 Score=156.66 Aligned_cols=244 Identities=20% Similarity=0.405 Sum_probs=187.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC-----------C-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----------G-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 172 (429)
..+.++|+++|+.++++.+..+|..- | .|+.+.+. ..+.+||++|.+.+.|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhh-cccchh
Confidence 44579999999999999999988653 3 46777764 44669999999999999999 678888
Q ss_pred cCCceEEEeecC-----------------------------CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC
Q 014173 173 LKGKTIRCSLSE-----------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (429)
Q Consensus 173 ~~g~~l~v~~~~-----------------------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~ 223 (429)
+.|..+++.... ....++|++||..+++.+++++...||+ +....++++.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d~ 325 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKDS 325 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeeccc
Confidence 888877764421 1257999999999999999999999998 9999999984
Q ss_pred CCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCch------------------hhhcccceE
Q 014173 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS------------------AAASQVKAL 285 (429)
Q Consensus 224 ~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l 285 (429)
..+.+++|||..|.+......|.+.+++. .++++.+.++.+.+....... .....+..|
T Consensus 326 -~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 326 -ATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred -ccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 45899999999999999999999998765 555666666655443221111 111223444
Q ss_pred EEccCC--CCCCH--------HHHHHHHhccCCeeEEEecCC-CCC---C-CcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014173 286 YVKNIP--DNTST--------EKIKELFQRHGEVTKVVMPPG-KSG---K-RDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (429)
Q Consensus 286 ~v~nlp--~~~te--------~~L~~~F~~~G~i~~v~i~~~-~~~---~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~ 350 (429)
.+.|+- ..+.+ ++|+.-|++||.|..|.|++. ... . .|..||+|.+.+++++|+..|+|.+|.+|
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 444441 11111 567888899999999999987 322 1 67899999999999999999999999999
Q ss_pred EEEEEeccC
Q 014173 351 VLEVVLAKP 359 (429)
Q Consensus 351 ~l~v~~a~~ 359 (429)
.|...|-..
T Consensus 483 tVvtsYyde 491 (500)
T KOG0120|consen 483 TVVASYYDE 491 (500)
T ss_pred EEEEEecCH
Confidence 999988653
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=9.3e-18 Score=134.55 Aligned_cols=83 Identities=36% Similarity=0.677 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|.+||.|.+|+|+.+..|++++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.++
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.73 E-value=5.5e-16 Score=136.93 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=185.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC--ceEEEeecC
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLSE 184 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~ 184 (429)
-+++|.|+-+-+|-+-|..+|++||.|..|.-....+ .=-|.|+|.+.+.|..|...|+|..|.. .+|+|.+++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 4688999999999999999999999998776544321 1239999999999999999999998743 466766633
Q ss_pred C---------------------------------------------------------------------cccccccCCC
Q 014173 185 T---------------------------------------------------------------------KNRLFIGNVP 195 (429)
Q Consensus 185 ~---------------------------------------------------------------------~~~l~v~nl~ 195 (429)
- ...|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 0234555654
Q ss_pred -CCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCC
Q 014173 196 -KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274 (429)
Q Consensus 196 -~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 274 (429)
..+|.+.|-.+|.-||. |..|+++.. .+..|+|++.+...|.-|+..|.+. .+.++.+++.+++......
T Consensus 307 ~~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred hhccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCccccC
Confidence 45899999999999998 999999885 2467999999999999999999876 5667888887765442111
Q ss_pred ch-----------------------------hhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEE
Q 014173 275 HS-----------------------------AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFG 325 (429)
Q Consensus 275 ~~-----------------------------~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~a 325 (429)
.. .-.+++.+|.+.|||.++++++|+.+|...|...+....-.++ +.+|
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~kma 455 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RKMA 455 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--ccee
Confidence 00 0113457899999999999999999999988665443322221 2699
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCe-EEEEEeccC
Q 014173 326 FIHYAERSSALKAVKDTEKYEIDGQ-VLEVVLAKP 359 (429)
Q Consensus 326 fV~F~~~~~A~~A~~~l~~~~~~g~-~l~v~~a~~ 359 (429)
++.+.+.+.|..|+..++.+.++.. .|+|+|++.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999999754 999999875
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=6.4e-17 Score=148.60 Aligned_cols=175 Identities=19% Similarity=0.445 Sum_probs=141.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceee
Q 014173 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (429)
Q Consensus 186 ~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 265 (429)
.+++|+--|+...+..+|..+|+.+|. |..|+++.| +.+.++++.+||.|.+......++ +|+++ .+.|..+.++
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGq--rllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQ--RLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCC--cccCceeEec
Confidence 367888888888899999999999998 999999999 688899999999999888877666 45444 5567777666
Q ss_pred ecCCCCCCCc--------hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC-CCC-CcEEEEEeCCHHHH
Q 014173 266 WADPKSTPDH--------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSA 335 (429)
Q Consensus 266 ~~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-kg~afV~F~~~~~A 335 (429)
.........+ .....+-..|||+||-.++++.+|+.+|.+||.|..|.+..+. .+. +||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 5432221100 0001122339999999999999999999999999999999997 444 99999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEeccCCCCCCC
Q 014173 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365 (429)
Q Consensus 336 ~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~ 365 (429)
.+|+..|||+.|-|+.|+|.....+.....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~~ 363 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTKE 363 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeeccccc
Confidence 999999999999999999998877665543
No 48
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=7e-16 Score=125.41 Aligned_cols=227 Identities=18% Similarity=0.222 Sum_probs=131.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccC---CceEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~ 179 (429)
..-+||||.+||.++...+|..+|..|---..+.|.... .....+-+|||.|.+...|..|+..|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 356899999999999999999999998655555554332 21234579999999999999999999999886 78999
Q ss_pred EeecCCcccccccCCCC---CCCHH--HHHHHHHhh-CCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 014173 180 CSLSETKNRLFIGNVPK---NWTED--EFRKVIEDV-GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (429)
Q Consensus 180 v~~~~~~~~l~v~nl~~---~~t~~--~l~~~f~~~-G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 253 (429)
|.+++.+.+.--..... ..+.- ..+. +.++ ......+....+|.... ..+. .+|.+.-.
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~-~~qr~sa~~qhd~~l~~p~~l~-~~~~--------a~al~~~~----- 176 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRN-KEQRKSADDQHDEGLSDPDELQ-EPGN--------ADALKEND----- 176 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccC-hhhcccchhhccccccCccccC-Cccc--------cccCCCcc-----
Confidence 99988654322211111 00000 0000 0000 00000000000110000 0000 00000000
Q ss_pred ccccCCCcceeeecCCCCC-----CCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEE
Q 014173 254 NFKLDGNTPTISWADPKST-----PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIH 328 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~ 328 (429)
...-........|..+... .........+.+|||.||...||+++|+.+|+.|-....++|..... ...|||+
T Consensus 177 ~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g--~~vaf~~ 254 (284)
T KOG1457|consen 177 TTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG--MPVAFAD 254 (284)
T ss_pred ccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC--cceEeec
Confidence 0000000000111111100 00111224568999999999999999999999998777777743332 3789999
Q ss_pred eCCHHHHHHHHHHhCCcee
Q 014173 329 YAERSSALKAVKDTEKYEI 347 (429)
Q Consensus 329 F~~~~~A~~A~~~l~~~~~ 347 (429)
|.+.+.|..||..|+|..|
T Consensus 255 ~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 255 FEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHHHhhccee
Confidence 9999999999999998766
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.69 E-value=4.7e-15 Score=129.52 Aligned_cols=246 Identities=20% Similarity=0.213 Sum_probs=194.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh--cCCccCCceE
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTI 178 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~l 178 (429)
.++..+-.|.|++|-..+++.+|.+.++.||+|..|.+... +..|.|+|.+.+.|+.|+... +...+.|+.-
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchh
Confidence 34567788999999999999999999999999999988665 347999999999999998432 2334556655
Q ss_pred EEeecCC-------------cccc--cccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHH
Q 014173 179 RCSLSET-------------KNRL--FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (429)
Q Consensus 179 ~v~~~~~-------------~~~l--~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a 243 (429)
.+.++.. .+.| .|-|.-+.+|-+-|..+....|+ |..|.|++. +---|.|+|.+.+.|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVA 172 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHH
Confidence 5555432 2223 34556677899999999999998 888777763 234689999999999
Q ss_pred HHHHHHHhccccccCCCcceeeecCCCCCC--------------------------------------------------
Q 014173 244 DYSRQKMLNANFKLDGNTPTISWADPKSTP-------------------------------------------------- 273 (429)
Q Consensus 244 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 273 (429)
++|.++|++..+..+..++.+.+++|..-.
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y 252 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGY 252 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCC
Confidence 999999999988888888888877665100
Q ss_pred --------------------------CchhhhcccceEEEccCC-CCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEE
Q 014173 274 --------------------------DHSAAASQVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGF 326 (429)
Q Consensus 274 --------------------------~~~~~~~~~~~l~v~nlp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~af 326 (429)
..+....+...+.|.+|. ..++-+.|..+|..||.|.+|++++.+. |.|.
T Consensus 253 ~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtam 329 (494)
T KOG1456|consen 253 YSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAM 329 (494)
T ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeE
Confidence 000001124778999998 6678899999999999999999988775 6899
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 327 V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
|++.+..+.++|+..||+..+.|.+|.|.+++..-.
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 999999999999999999999999999998876543
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.69 E-value=1.5e-15 Score=137.72 Aligned_cols=166 Identities=16% Similarity=0.243 Sum_probs=131.0
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeec
Q 014173 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (429)
Q Consensus 188 ~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 267 (429)
.|.++.||+.+|.++|+++|+.++ |..+.+.+ .+++..+-|||+|.+.+++.+|++.- ...+..+.|.|.-+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~Alkkd---R~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKD---RESMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhh---HHHhCCceEEEEcc
Confidence 456789999999999999999998 78766654 56889999999999999999998864 34577788877666
Q ss_pred CCCCCCC-----chhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeE-EEecCCCCCC-CcEEEEEeCCHHHHHHHHH
Q 014173 268 DPKSTPD-----HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (429)
Q Consensus 268 ~~~~~~~-----~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~ 340 (429)
.+..... ......+...|.+++||+.||+++|.+||+.--.|.. |.++.+..++ .|-|||+|++.+.|++|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 4443211 1111135578999999999999999999998644444 5667777666 8999999999999999998
Q ss_pred HhCCceeCCeEEEEEeccCCCC
Q 014173 341 DTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
. |...|+.|.|.|..+.....
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e~ 184 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAEV 184 (510)
T ss_pred H-HHHhhccceEEeehhHHHHH
Confidence 6 78899999999987764443
No 51
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.67 E-value=3.4e-16 Score=137.01 Aligned_cols=251 Identities=16% Similarity=0.212 Sum_probs=181.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.....|..++|||..+..+|..+|+-..-..-.+.+-....|+..|.+.|.|.+.+.-.-|++. +...+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 3567789999999999999999997653222112222222377889999999999999999976 777788899988776
Q ss_pred CCc----------------------ccccccCCCCCCCHHHHHHHHHhh---CCceeEEEEeeCCCCCCCCccEEEEEec
Q 014173 184 ETK----------------------NRLFIGNVPKNWTEDEFRKVIEDV---GPGVETIELIKDPQNPSRNRGFSFVLYY 238 (429)
Q Consensus 184 ~~~----------------------~~l~v~nl~~~~t~~~l~~~f~~~---G~~v~~~~~~~d~~~~~~~~g~~fv~f~ 238 (429)
... --+.+++||++.+..++..+|... +.....+.++.. ..++..|-|||.|.
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLFA 214 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEec
Confidence 532 134568999999999999999632 212566667664 46888999999999
Q ss_pred ChHHHHHHHHHHhccccccCCCcceeee----------------------cCCCC---CCCchhhhcccceEEEccCCCC
Q 014173 239 NNACADYSRQKMLNANFKLDGNTPTISW----------------------ADPKS---TPDHSAAASQVKALYVKNIPDN 293 (429)
Q Consensus 239 ~~~~a~~a~~~l~~~~~~~~~~~~~~~~----------------------~~~~~---~~~~~~~~~~~~~l~v~nlp~~ 293 (429)
.+++|..|+.+-.. .++-+.+.+.. ..+-. ............||.+++||+.
T Consensus 215 ~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred CHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 99999988865321 11111111000 00000 0001111133679999999999
Q ss_pred CCHHHHHHHHhccC-Cee--EEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 294 TSTEKIKELFQRHG-EVT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 294 ~te~~L~~~F~~~G-~i~--~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
.+.++|.+||..|- .|. .|.++.+..|+ .|-|||+|.+.+.|..|..+.+++....|.|.|.-+...
T Consensus 292 AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 292 ATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred hhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 99999999999886 333 37777777777 899999999999999999999998888999999776543
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=8.8e-16 Score=108.39 Aligned_cols=70 Identities=44% Similarity=0.872 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
|||+|||+++|+++|+++|++||.|..+.+..+ .++.++++|||+|.+.++|.+|++.|++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5689999999999999999999999999999999985
No 53
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.5e-15 Score=130.63 Aligned_cols=89 Identities=25% Similarity=0.399 Sum_probs=81.5
Q ss_pred hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
+......++|+|+|||+...+-||+.+|.+||.|.+|.|+.+..|+||||||+|++.++|.+|..+|||..|.||+|.|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 33345679999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 014173 356 LAKPQTDKK 364 (429)
Q Consensus 356 ~a~~~~~~~ 364 (429)
.|..+...+
T Consensus 170 ~ATarV~n~ 178 (376)
T KOG0125|consen 170 NATARVHNK 178 (376)
T ss_pred ccchhhccC
Confidence 998875433
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.4e-15 Score=107.37 Aligned_cols=69 Identities=25% Similarity=0.616 Sum_probs=64.9
Q ss_pred EEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014173 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (429)
Q Consensus 285 l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 353 (429)
|||+|||..+|+++|+++|++||.|..+.+..+..+. +++|||+|.+.++|.+|+..|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999998875455 89999999999999999999999999999986
No 55
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=7.4e-15 Score=135.04 Aligned_cols=81 Identities=16% Similarity=0.359 Sum_probs=74.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+++|+++|+++|+.||.|+.|+|+.+..+. +|||||+|.+.++|.+||..|++..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 456899999999999999999999999999999998886543 899999999999999999999999999999999998
Q ss_pred cCC
Q 014173 358 KPQ 360 (429)
Q Consensus 358 ~~~ 360 (429)
.+.
T Consensus 185 ~p~ 187 (346)
T TIGR01659 185 RPG 187 (346)
T ss_pred ccc
Confidence 753
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.4e-15 Score=124.23 Aligned_cols=82 Identities=37% Similarity=0.590 Sum_probs=79.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+..+|.|.|||.++++.+|++||.+||.|.+|.|.+++.||.++|||||.|.+.++|.+||..|+|.-+..-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 014173 185 TK 186 (429)
Q Consensus 185 ~~ 186 (429)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 57
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.3e-15 Score=125.52 Aligned_cols=79 Identities=33% Similarity=0.674 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
.-+.|||++|||.++.+.|+.+|++||.|+++.++.|+.||++|||+||.|++.++|.+|++. .+-.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 346899999999999999999999999999999999999999999999999999999999965 6678999998887664
No 58
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.7e-15 Score=126.11 Aligned_cols=167 Identities=27% Similarity=0.438 Sum_probs=130.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCc
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (429)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..|++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 359999999999999999999999999999874 458999999999999999999999999988888887643
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeee
Q 014173 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (429)
Q Consensus 187 ~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 266 (429)
..-- +.+.+ +++.. |
T Consensus 74 ~~~~------------------------------------g~~~~--------------------------g~r~~---~ 88 (216)
T KOG0106|consen 74 RRGR------------------------------------GRPRG--------------------------GDRRS---D 88 (216)
T ss_pred cccc------------------------------------CCCCC--------------------------CCccc---h
Confidence 2100 00000 00000 0
Q ss_pred cCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 014173 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (429)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~ 346 (429)
.... .....+.+.|+|.+++..+.+.+|.++|.++|.+....+ .++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~~-----~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRRY-----RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhcc-----CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchh
Confidence 0000 001144578999999999999999999999999965555 23789999999999999999999999
Q ss_pred eCCeEEEEEec
Q 014173 347 IDGQVLEVVLA 357 (429)
Q Consensus 347 ~~g~~l~v~~a 357 (429)
+.++.|.+...
T Consensus 158 ~~~~~l~~~~~ 168 (216)
T KOG0106|consen 158 LNGRRISVEKN 168 (216)
T ss_pred hcCceeeeccc
Confidence 99999999443
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=7.1e-15 Score=103.57 Aligned_cols=70 Identities=49% Similarity=0.851 Sum_probs=65.2
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
|||+|||+.+++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|+..+++..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999998999999884
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=6.3e-15 Score=109.10 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=74.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
..+++|||+||+..+++++|.++|+++|.|..|.+-.++.++ =|||||+|-+.++|..|++-++++.++.++|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 456899999999999999999999999999999998887766 799999999999999999999999999999999997
Q ss_pred cC
Q 014173 358 KP 359 (429)
Q Consensus 358 ~~ 359 (429)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1e-14 Score=115.15 Aligned_cols=80 Identities=23% Similarity=0.508 Sum_probs=71.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||.++.+.+|.++|.+||.|..|.|.... +.-+||||+|++..+|..||..-+|..++|++|+|.|+..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 456899999999999999999999999999999875433 2247999999999999999999999999999999999875
Q ss_pred C
Q 014173 360 Q 360 (429)
Q Consensus 360 ~ 360 (429)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=7.3e-15 Score=121.44 Aligned_cols=80 Identities=26% Similarity=0.541 Sum_probs=76.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...+|.|.||+.++++.+|+++|.+||.|.+|.|.+++.+. ||||||.|.+.++|.+||..|||+-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred CC
Q 014173 359 PQ 360 (429)
Q Consensus 359 ~~ 360 (429)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=9.3e-15 Score=117.52 Aligned_cols=81 Identities=25% Similarity=0.490 Sum_probs=76.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
.....|.|-||.+-++.++|+.+|++||.|.+|.|+.+..+. +|||||.|....+|+.|+.+|+|..|+|+.|+|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 334689999999999999999999999999999999999887 999999999999999999999999999999999998
Q ss_pred cCC
Q 014173 358 KPQ 360 (429)
Q Consensus 358 ~~~ 360 (429)
+-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 743
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.5e-14 Score=122.50 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=71.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|..||. |+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 47999999999999999999999999999999988764 36999999999999999996 9999999999999998754
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4.8e-14 Score=110.67 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=72.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
.++|||+||+..+++.+|..+|..||.|..|-|...+. |||||+|+++.+|..|+..|+|..|+|..|+|.+..-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 47899999999999999999999999999998877554 799999999999999999999999999999999988654
Q ss_pred C
Q 014173 362 D 362 (429)
Q Consensus 362 ~ 362 (429)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.4e-14 Score=100.84 Aligned_cols=69 Identities=33% Similarity=0.654 Sum_probs=63.3
Q ss_pred EEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014173 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (429)
Q Consensus 285 l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 353 (429)
|+|+|||+.+++++|+++|+.||.|..|.+...+.+. +++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999887755 89999999999999999999999999999985
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.9e-14 Score=122.07 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+.+.. ++|||||+|.+.++|..|| .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 5799999999999999999 5999999999999999763
No 68
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.2e-15 Score=120.14 Aligned_cols=86 Identities=29% Similarity=0.573 Sum_probs=79.8
Q ss_pred hcCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 99 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
....-+++.-|||+|||+.+|+.+|...|++||.|+.|.|++++.||+++||||+.|.++.+...|+..|||..|.||.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 33445677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecC
Q 014173 179 RCSLSE 184 (429)
Q Consensus 179 ~v~~~~ 184 (429)
+|....
T Consensus 108 rVDHv~ 113 (219)
T KOG0126|consen 108 RVDHVS 113 (219)
T ss_pred Eeeecc
Confidence 997543
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.8e-14 Score=106.70 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..++||||+||++.++++.|-++|+++|+|..|.+-.++.+..+-|||||+|-+.++|..|++.+++..|..++|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46799999999999999999999999999999999999988999999999999999999999999999999999999886
Q ss_pred C
Q 014173 184 E 184 (429)
Q Consensus 184 ~ 184 (429)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=6.7e-14 Score=99.64 Aligned_cols=80 Identities=25% Similarity=0.480 Sum_probs=72.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
-++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||-|++..+|.+|+..|+|..+.++.|.|-|-.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 3578999999999999999999999999999999766644 699999999999999999999999999999999987654
Q ss_pred C
Q 014173 361 T 361 (429)
Q Consensus 361 ~ 361 (429)
.
T Consensus 96 ~ 96 (124)
T KOG0114|consen 96 D 96 (124)
T ss_pred H
Confidence 3
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=3.2e-14 Score=120.97 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+=+||||..|++++++..|+..|..||+|..|+|+++..||+++|||||+|....+...|.+..+|..|+|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998765
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=125.39 Aligned_cols=168 Identities=35% Similarity=0.617 Sum_probs=121.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+.+|+++|+++|.+||.|..|.+..++.++.++|||||.|.+.+.|..|+..+++..|.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999998753
Q ss_pred -cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 186 -KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 186 -~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
.... ...... ........ .
T Consensus 195 ~~~~~-----------------------------------~~~~~~---------------~~~~~~~~-----~----- 214 (306)
T COG0724 195 ASQPR-----------------------------------SELSNN---------------LDASFAKK-----L----- 214 (306)
T ss_pred ccccc-----------------------------------cccccc---------------cchhhhcc-----c-----
Confidence 0000 000000 00000000 0
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHH
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVK 340 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~ 340 (429)
.............+++.+++..++...+..+|..+|.+..+.+....... ..+.++.+.....+..++.
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 -------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred -------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00001111445689999999999999999999999999877776665443 2333344444444444443
No 73
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.5e-13 Score=113.46 Aligned_cols=80 Identities=24% Similarity=0.444 Sum_probs=71.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
-++|||++|++.++.+.|+.+|++||.|+.+.|+.|+.+. ||||||+|.+.++|.+|+.- -+-.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 4689999999999999999999999999999999888664 99999999999999999985 45689999999999876
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
...
T Consensus 91 g~~ 93 (247)
T KOG0149|consen 91 GGK 93 (247)
T ss_pred cCc
Confidence 433
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=98.42 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
|...+.|||+|||+.+|.+++.++|.+||.|..|+|-..+ ..+|.|||.|.+..+|++|+..|+|..+.++.|.|.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3456889999999999999999999999999999996654 4599999999999999999999999999999999998
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7754
No 75
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=2.6e-14 Score=114.95 Aligned_cols=80 Identities=30% Similarity=0.509 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
.-++|.|-||-+.++.++|+.+|++||.|.+|.|+++..|+.++|||||.|....+|+.|+++|+|.+|+|+.|.|.++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999998876
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.7e-14 Score=110.25 Aligned_cols=76 Identities=29% Similarity=0.498 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
-.+.|||+||+..+++.+|..+|..||+|..|+|-.. +.|||||+|.++.+|..|+..|+|+.|.|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3688999999999999999999999999999999775 47899999999999999999999999999999999887
Q ss_pred C
Q 014173 185 T 185 (429)
Q Consensus 185 ~ 185 (429)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 77
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=115.80 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
+.+.||||+||++.+|+++|++||+.||+|.+|+|+++ +..+++|||+|.+++.|..|+ .|+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 35689999999999999999999999999999999998 455689999999999999999 79999999999999876
Q ss_pred CC
Q 014173 184 ET 185 (429)
Q Consensus 184 ~~ 185 (429)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=8.7e-14 Score=126.04 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCH--HHHHHHHHHhcCCccCCceEEEee
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK--EFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
...+|||+||++.+++++|+.+|..||.|.+|.|++ .|| ||||||+|.+. .++.+||..|+|..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 457899999999999999999999999999999994 457 99999999987 789999999999999999999999
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8864
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=6.6e-14 Score=120.64 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|+|.|||+...+.||+.+|.+||+|.+|.|+-+. .-+|||+||.|.+.++|.+|.++|||..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34689999999999999999999999999999999876 4589999999999999999999999999999999999887
Q ss_pred Cc
Q 014173 185 TK 186 (429)
Q Consensus 185 ~~ 186 (429)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 53
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=2.1e-12 Score=115.38 Aligned_cols=174 Identities=20% Similarity=0.364 Sum_probs=143.2
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
..+.+||.|||+.+...+|+++|....-.|+.|.++.| ..+++++.+.|+|.+++.+++|+..|+. +.+.++.+.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEE
Confidence 34669999999999999999999987666999999998 6799999999999999999999999965 5667777766
Q ss_pred eecCCCC---------------------------------------------CCC-------------------------
Q 014173 265 SWADPKS---------------------------------------------TPD------------------------- 274 (429)
Q Consensus 265 ~~~~~~~---------------------------------------------~~~------------------------- 274 (429)
+-.+... ...
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 5432210 000
Q ss_pred ---------chhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCC
Q 014173 275 ---------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEK 344 (429)
Q Consensus 275 ---------~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~ 344 (429)
+....+...++||.||.+.+....|++.|.-.|.|..|.+-.++.+. +|||.|+|.++-.|..||.+|++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 00011224779999999999999999999999999999999999887 99999999999999999999998
Q ss_pred ceeCCeEEEEEeccCCCC
Q 014173 345 YEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 345 ~~~~g~~l~v~~a~~~~~ 362 (429)
.-+..++..+++.+-...
T Consensus 279 ~g~~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDRIPDR 296 (608)
T ss_pred CCCccccceeeccccccc
Confidence 888889999988665443
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.3e-13 Score=125.00 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=71.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER--SSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~--~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...+|||+||++.+++++|+.+|+.||.|.+|.|++... ||||||+|.+. .++.+||..|||..|.|+.|+|..|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 346899999999999999999999999999999995443 89999999987 78999999999999999999999997
Q ss_pred CC
Q 014173 359 PQ 360 (429)
Q Consensus 359 ~~ 360 (429)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 53
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=7.8e-13 Score=112.68 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=76.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
.+-+||||.-|++++++..|+..|..||.|+.|+|+.++-+. +|||||+|.+..+..+|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 455899999999999999999999999999999999997543 999999999999999999999999999999999997
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
...-.
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 76544
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=5.9e-13 Score=94.15 Aligned_cols=72 Identities=46% Similarity=0.803 Sum_probs=67.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
+|||+|||+.++.++|+++|.+||.|..+.+..+. +.++|+|||+|.+.+.|..|+..+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7788999999999999999999999999999998873
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=9.2e-13 Score=93.13 Aligned_cols=72 Identities=28% Similarity=0.583 Sum_probs=66.3
Q ss_pred eEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
+|+|+|||..++.++|+++|.+||.|..+.+.......+++|||+|.+..+|.+|+..+++..|.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999988773338999999999999999999999999999999873
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=9.1e-13 Score=110.94 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=71.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
...+|||+||++.+|+++|+++|+.||.|.+|.|+++... ++||||+|.+.++|..|+. |+|..|.+++|.|......
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et-~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY-ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc-ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 3479999999999999999999999999999999988532 5899999999999999996 9999999999999887654
Q ss_pred C
Q 014173 361 T 361 (429)
Q Consensus 361 ~ 361 (429)
.
T Consensus 82 ~ 82 (243)
T PLN03121 82 E 82 (243)
T ss_pred c
Confidence 3
No 86
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.5e-13 Score=111.66 Aligned_cols=88 Identities=26% Similarity=0.518 Sum_probs=80.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||++|...+++.-|...|-+||.|+.|.|+.+.... ||||||+|.-.++|.+||..||+..+.||.|+|.||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456899999999999999999999999999999999887543 999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 014173 358 KPQTDKKTEG 367 (429)
Q Consensus 358 ~~~~~~~~~~ 367 (429)
+|...+....
T Consensus 88 kP~kikegsq 97 (298)
T KOG0111|consen 88 KPEKIKEGSQ 97 (298)
T ss_pred CCccccCCCC
Confidence 9987665543
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3.1e-13 Score=101.08 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
.+-.|||.++...+|+++|.+.|..||+|.+|.|..+..||..+|||+|+|.+.+.|++|+..+||..|.|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999873
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=7.3e-12 Score=109.85 Aligned_cols=165 Identities=13% Similarity=0.213 Sum_probs=129.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeee
Q 014173 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (429)
Q Consensus 187 ~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 266 (429)
-.+.|++|-..+++.+|.+.++.||+ |..+..+.. +.-+.|.|.+.+.|..+..-.......+.+....+++
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~-i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGP-IAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCc-eEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 45788999999999999999999998 777766553 5579999999999998887776677778888777777
Q ss_pred cCCCCCC-CchhhhcccceEE--EccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 014173 267 ADPKSTP-DHSAAASQVKALY--VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 267 ~~~~~~~-~~~~~~~~~~~l~--v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~ 343 (429)
+...... ....+....+.|. |-|--+.+|.+.|..++..+|.|.+|.|++.. + -.|.|+|++.+.|++|...||
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-g--VQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-G--VQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-c--eeeEEeechhHHHHHHHhhcc
Confidence 6443322 1222223334444 44555899999999999999999999998763 3 469999999999999999999
Q ss_pred Ccee--CCeEEEEEeccCCCC
Q 014173 344 KYEI--DGQVLEVVLAKPQTD 362 (429)
Q Consensus 344 ~~~~--~g~~l~v~~a~~~~~ 362 (429)
|..| +.+.|+|.||++..-
T Consensus 181 GADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccccceeEEEEecCccee
Confidence 9976 457999999998654
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=92.26 Aligned_cols=71 Identities=48% Similarity=0.863 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 111 v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
|+|||..+++++|+.+|.+||.|..+.+...+.++.++|+|||+|.+.+.|..|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999999873
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6.3e-14 Score=110.48 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=86.2
Q ss_pred HHHHHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--C
Q 014173 245 YSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--R 322 (429)
Q Consensus 245 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--k 322 (429)
+.+..|+.+.+.++... ..+|.... ..+.-|||+|||+.+|+.+|.-+|++||.|+.|.+++++.+. +
T Consensus 8 k~i~~lne~Elq~g~~~-~~SWH~~Y---------kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSK 77 (219)
T KOG0126|consen 8 KNIQKLNERELQLGIAD-KKSWHQEY---------KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSK 77 (219)
T ss_pred HHHHHhhHHhhcccccc-ccchhhhc---------ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCccc
Confidence 34455555544443332 44554333 334579999999999999999999999999999999999765 9
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 323 g~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
||||+.|++..+..-|+..|||..|.||.|+|.-......
T Consensus 78 GFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~ 117 (219)
T KOG0126|consen 78 GFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKK 117 (219)
T ss_pred ceEEEEecCccceEEEEeccCCceecceeEEeeecccccC
Confidence 9999999999999999999999999999999987654433
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=2.1e-12 Score=86.16 Aligned_cols=56 Identities=32% Similarity=0.554 Sum_probs=51.6
Q ss_pred HHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 299 L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
|+++|++||.|..|.+.+.+ +++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998776 489999999999999999999999999999999986
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=4.8e-12 Score=89.95 Aligned_cols=73 Identities=30% Similarity=0.590 Sum_probs=68.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
+|+|+|||..+++++|+++|+.||.|..+.+.....+. +++|||+|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998877655 79999999999999999999999999999999874
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.6e-13 Score=107.57 Aligned_cols=84 Identities=33% Similarity=0.602 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...+||||++|...+++.-|...|-+||.|..|.++.+..+.+.||||||+|.-.++|..|+..||+..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 9864
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=4.8e-12 Score=89.93 Aligned_cols=74 Identities=47% Similarity=0.846 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+|+|+|||+.+++++|+++|+.||.|..+.+..++.+ .++++|||+|.+.+.|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988764 7789999999999999999999999999999998864
No 95
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.7e-12 Score=97.13 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=76.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
.....|||.++...+++++|.+.|..||.|+.|.+..++.+. ||||+|+|.+.++|++|+..|||..+-|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 556899999999999999999999999999999998888665 999999999999999999999999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
-.+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7653
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.7e-12 Score=89.12 Aligned_cols=69 Identities=32% Similarity=0.623 Sum_probs=63.2
Q ss_pred EccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 287 v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
|+|||..+++++|+.+|++||.|..+.+...+. +. +++|||+|.+.++|.+|+..|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999888764 33 8999999999999999999999999999999873
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=3e-12 Score=119.24 Aligned_cols=80 Identities=36% Similarity=0.720 Sum_probs=77.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCc
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (429)
++|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|.+|++.|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998643
No 98
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.7e-13 Score=130.03 Aligned_cols=231 Identities=16% Similarity=0.196 Sum_probs=187.8
Q ss_pred CCCEEEEcCCCCCCCHH-HHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLPKDASEE-DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~-~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
......+.++-+..... ..+..|..+|.|..|++...........+.++.+....++..|. ...+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 44556777887766555 57789999999999998773332333348999999999999999 56888889999888877
Q ss_pred CCc----------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHH
Q 014173 184 ETK----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (429)
Q Consensus 184 ~~~----------------~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~ 247 (429)
.+. .++|++||+..+...+|...|..++. +..+++... ...++.+|+||+.|.....+.+++
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhhh
Confidence 653 36899999999999999999999886 666666522 466788999999999999998887
Q ss_pred HHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEE
Q 014173 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGF 326 (429)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~af 326 (429)
....... -....|+|.|+|+..|.+.|+.+|..+|.+++++++..+.++ +|.||
T Consensus 727 ~f~d~~~-------------------------~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~ 781 (881)
T KOG0128|consen 727 AFRDSCF-------------------------FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKAR 781 (881)
T ss_pred hhhhhhh-------------------------hhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccccccee
Confidence 6533221 112579999999999999999999999999999999999888 99999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q 014173 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 327 V~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (429)
|.|.+..+|.+++.......+.-+.+.|..+.+...+
T Consensus 782 v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 782 VDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred ccCCCcchhhhhcccchhhhhhhcCccccccCCcccc
Confidence 9999999999999988888888888888887774433
No 99
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=2.6e-12 Score=101.71 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=74.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
.+..+|||+||+..++++.|+++|-+.|.|++|+|++++-+. +|||||+|.+.++|.=|++-||...+-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 445799999999999999999999999999999999998665 899999999999999999999999999999999999
Q ss_pred c
Q 014173 358 K 358 (429)
Q Consensus 358 ~ 358 (429)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 100
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.32 E-value=1.4e-11 Score=114.07 Aligned_cols=79 Identities=24% Similarity=0.516 Sum_probs=67.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC-CCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
..|||.|||.+++..+|+++|..||.|+...|.... .++ .+||||+|.+..++..||.+ +-..|++++|.|.-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 459999999999999999999999999987665544 222 48999999999999999996 678899999999887764
Q ss_pred CC
Q 014173 361 TD 362 (429)
Q Consensus 361 ~~ 362 (429)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 101
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=1.3e-11 Score=114.42 Aligned_cols=73 Identities=26% Similarity=0.470 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
..+.++|+|-|||..++.++|+.+|..||+|..|+..+. .+|.+||+|-+..+|++|++.|++..+.|+.|..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 446789999999999999999999999999999776443 5789999999999999999999999999998873
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.2e-11 Score=85.21 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=55.3
Q ss_pred HHHHHHhhc----cCCCeEEEE-EeecCCC--CCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 120 EEDLRDLCE----PIGDVFEVR-LMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 120 ~~~l~~~f~----~~G~i~~v~-~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568888888 999999996 7666666 899999999999999999999999999999999986
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.25 E-value=2.9e-11 Score=80.62 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=50.7
Q ss_pred HHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 123 l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
|+++|++||.|..|.+.... +++|||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 589999999999999999999999999999999875
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.25 E-value=4.1e-11 Score=111.75 Aligned_cols=82 Identities=23% Similarity=0.449 Sum_probs=76.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
+.|||+|||+.+++++|..+|+..|.|..++++.|+.+. ||||||+|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999988665 999999999999999999999999999999999999876
Q ss_pred CCCC
Q 014173 361 TDKK 364 (429)
Q Consensus 361 ~~~~ 364 (429)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5543
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=3.8e-11 Score=83.97 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=51.0
Q ss_pred HHHHHHHHh----ccCCeeEEE-ecCCCC---C-CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 296 TEKIKELFQ----RHGEVTKVV-MPPGKS---G-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 296 e~~L~~~F~----~~G~i~~v~-i~~~~~---~-~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
+++|+++|+ +||.|.+|. |+.++. + ++|||||+|.+.++|.+|+..|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999985 444432 3 39999999999999999999999999999999873
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.5e-10 Score=103.42 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=113.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecC--CCCCcee---EEEEEecCHHHHHHHHHHhcCCccCCc
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK--ESGESKG---FAFVSFRSKEFAKKAIDELHSKELKGK 176 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~--~~~~~~g---~afV~f~~~~~a~~a~~~l~~~~~~g~ 176 (429)
.+.-++.|||++||++++++.|...|..||.+..=...+.. .--.++| |+|+.|.+..++..-+..+.- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 34456789999999999999999999999987433321111 1123556 999999999998887766543 222
Q ss_pred eEEEeecCCccc-ccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcccc
Q 014173 177 TIRCSLSETKNR-LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255 (429)
Q Consensus 177 ~l~v~~~~~~~~-l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 255 (429)
.+.+..+.+.-+ ..|. |..+.+ .| ..+
T Consensus 332 ~~yf~vss~~~k~k~VQ---------------------IrPW~l-aD------------------------------s~f 359 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQ---------------------IRPWVL-AD------------------------------SDF 359 (520)
T ss_pred ceEEEEecCccccccee---------------------EEeeEe-cc------------------------------chh
Confidence 333222221100 0000 111110 00 000
Q ss_pred ccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHh-ccCCeeEEEecCCCCCC--CcEEEEEeCCH
Q 014173 256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKSGK--RDFGFIHYAER 332 (429)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~~--kg~afV~F~~~ 332 (429)
... ......+.+||||++||..++.++|-.+|. -||.|..|-|.+|..-+ +|-|-|+|.+.
T Consensus 360 v~d----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq 423 (520)
T KOG0129|consen 360 VLD----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ 423 (520)
T ss_pred hhc----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc
Confidence 000 011125568999999999999999999999 59999999999996554 99999999999
Q ss_pred HHHHHHHHH
Q 014173 333 SSALKAVKD 341 (429)
Q Consensus 333 ~~A~~A~~~ 341 (429)
.+=.+||.+
T Consensus 424 qsYi~AIsa 432 (520)
T KOG0129|consen 424 QAYIKAISA 432 (520)
T ss_pred HHHHHHHhh
Confidence 999999974
No 107
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=8.1e-11 Score=107.73 Aligned_cols=78 Identities=33% Similarity=0.652 Sum_probs=73.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC-CCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
.++|||+|||..+++++|+++|.+||.|..|.|..++ .+. +|||||.|.+.++|..|+..+++..|.|++|+|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4899999999999999999999999999999999886 344 99999999999999999999999999999999999764
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.7e-11 Score=100.77 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
..-+++|+|||-.||......+|..+|-.||.|++.++..|+.|+.+|.|+||.|.++.+|+.||..|||..|.=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcc
Q 014173 181 SLSETKN 187 (429)
Q Consensus 181 ~~~~~~~ 187 (429)
.+.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 8877653
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.14 E-value=1.4e-10 Score=95.81 Aligned_cols=83 Identities=19% Similarity=0.388 Sum_probs=73.6
Q ss_pred ccceEEEccCCCCCCHHHHHH----HHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 281 QVKALYVKNIPDNTSTEKIKE----LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
+..+|||.||...+..++|+. +|++||.|.+|...... ..||.|||.|.+...|..|+.+|+|+.|-|++++|.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 334999999999999999988 99999999999887544 1279999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 014173 357 AKPQTDKK 364 (429)
Q Consensus 357 a~~~~~~~ 364 (429)
|..+..-.
T Consensus 87 A~s~sdii 94 (221)
T KOG4206|consen 87 AKSDSDII 94 (221)
T ss_pred ccCccchh
Confidence 99876543
No 110
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=93.52 Aligned_cols=85 Identities=27% Similarity=0.469 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccC-CCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
.......++|..+|.-+-+..|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|.-|.+.||+..|.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred eecCCc
Q 014173 181 SLSETK 186 (429)
Q Consensus 181 ~~~~~~ 186 (429)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887654
No 111
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=99.44 Aligned_cols=73 Identities=22% Similarity=0.586 Sum_probs=69.1
Q ss_pred eEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
+|||+|||..+++.+|+.+|++||+|..+.|++ .||||..++...|..||+.||+.+|+|..|.|.-++.+..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 799999999999999999999999999999986 5799999999999999999999999999999999988843
No 112
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.9e-11 Score=103.11 Aligned_cols=85 Identities=21% Similarity=0.452 Sum_probs=80.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
..++...|||..|.+-+|.++|.-+|+.||+|.+|.++++..||.+..||||+|.+.+++.+|+=.|++..|..+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++..-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 98753
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.12 E-value=2.1e-10 Score=102.31 Aligned_cols=177 Identities=21% Similarity=0.335 Sum_probs=135.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..+++|++++.+.+.+.++..++..+|.+..+.+........++|+++|.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46889999999999999999999999988888887777778999999999999999999996533334444444322221
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
... ++ +....
T Consensus 167 ~~~--------------------------------~~-----------------------------------~~n~~--- 176 (285)
T KOG4210|consen 167 RRG--------------------------------LR-----------------------------------PKNKL--- 176 (285)
T ss_pred ccc--------------------------------cc-----------------------------------ccchh---
Confidence 100 00 00000
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHh
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l 342 (429)
...........++|++|+..++.++|+.+|..+|.|..|+++....+. +|||||.|.+...+..++..
T Consensus 177 ---------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~- 246 (285)
T KOG4210|consen 177 ---------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND- 246 (285)
T ss_pred ---------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-
Confidence 000000112344599999999999999999999999999999988766 99999999999999999987
Q ss_pred CCceeCCeEEEEEeccCCC
Q 014173 343 EKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~~ 361 (429)
....+.+++++|.+..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ccCcccCcccccccCCCCc
Confidence 8889999999999887653
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.5e-11 Score=98.96 Aligned_cols=139 Identities=23% Similarity=0.379 Sum_probs=113.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
++..+||||.||-..++++-|.++|-+.|+|+.|.|..... +..+ ||||.|.+..+..-|+..+||..+.++.|.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 44568999999999999999999999999999999988775 5556 999999999999999999999887777765532
Q ss_pred cCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcc
Q 014173 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (429)
Q Consensus 183 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 262 (429)
T Consensus 84 -------------------------------------------------------------------------------- 83 (267)
T KOG4454|consen 84 -------------------------------------------------------------------------------- 83 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCCCCCCCchhhhcccceEEEcc----CCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHH
Q 014173 263 TISWADPKSTPDHSAAASQVKALYVKN----IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337 (429)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~ 337 (429)
+.++ |...++++.+...|+.-|.|..+++.++.++. +.++|+.+--.-+.-.
T Consensus 84 -----------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 84 -----------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred -----------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcH
Confidence 2222 44566778888889999999999999988876 8899999877666667
Q ss_pred HHHHhCCce
Q 014173 338 AVKDTEKYE 346 (429)
Q Consensus 338 A~~~l~~~~ 346 (429)
++....+..
T Consensus 141 ~~~~y~~l~ 149 (267)
T KOG4454|consen 141 ALDLYQGLE 149 (267)
T ss_pred HhhhhcccC
Confidence 776655543
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=8.5e-10 Score=103.59 Aligned_cols=163 Identities=25% Similarity=0.449 Sum_probs=126.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+.....|||++||..+++..+++++..||++....++.+..+|.++||||.+|.++.....|++.|||+.+.+++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 33556799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCcccc----------cccCCCC-----------------CCCH-------------HHHHHHHHhhCCceeEEEEeeC
Q 014173 183 SETKNRL----------FIGNVPK-----------------NWTE-------------DEFRKVIEDVGPGVETIELIKD 222 (429)
Q Consensus 183 ~~~~~~l----------~v~nl~~-----------------~~t~-------------~~l~~~f~~~G~~v~~~~~~~d 222 (429)
+-..... -|-.|+. -++. ++++.-+..||. |..|.+.++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCC
Confidence 6532110 0111111 1122 233345667887 888888776
Q ss_pred -CC-CCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecC
Q 014173 223 -PQ-NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268 (429)
Q Consensus 223 -~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 268 (429)
+. ......|-.||+|.+.++++.|+++|++.. +.++.+...+..
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK--F~nRtVvtsYyd 490 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK--FANRTVVASYYD 490 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCce--eCCcEEEEEecC
Confidence 22 234456788999999999999999998874 456666655543
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=5.7e-10 Score=108.89 Aligned_cols=166 Identities=21% Similarity=0.318 Sum_probs=132.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
....++|||++||+..+++.+|+..|..+|.|..|.|..-.. +....|+||.|.+...+-+|+..+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 334678999999999999999999999999999999866543 4556689999999999888887766654332221111
Q ss_pred ecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCc
Q 014173 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (429)
Q Consensus 182 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (429)
+..
T Consensus 447 lG~----------------------------------------------------------------------------- 449 (975)
T KOG0112|consen 447 LGQ----------------------------------------------------------------------------- 449 (975)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred ceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
+ .....+.+++++|+..+....|...|..||.|..|.+.... .||+|.|.+...|..|++.
T Consensus 450 -------~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 450 -------P--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHD 510 (975)
T ss_pred -------c--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHH
Confidence 0 01334689999999999999999999999999999887776 7999999999999999999
Q ss_pred hCCceeCC--eEEEEEeccCCCCCC
Q 014173 342 TEKYEIDG--QVLEVVLAKPQTDKK 364 (429)
Q Consensus 342 l~~~~~~g--~~l~v~~a~~~~~~~ 364 (429)
|.|..|++ ++|+|.|+.+.....
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCCh
Confidence 99999975 789999998765543
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=9.7e-10 Score=96.09 Aligned_cols=77 Identities=26% Similarity=0.542 Sum_probs=69.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~v~~a~ 358 (429)
....+|||++|-..+++.+|+++|.+||.|..|++...+ ++|||+|.+..+|..|..++ +...|+|++|.|.|+.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 446899999999999999999999999999999999887 89999999999999988764 5567899999999999
Q ss_pred CC
Q 014173 359 PQ 360 (429)
Q Consensus 359 ~~ 360 (429)
+.
T Consensus 302 ~~ 303 (377)
T KOG0153|consen 302 PK 303 (377)
T ss_pred Cc
Confidence 83
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.02 E-value=7.8e-10 Score=106.23 Aligned_cols=79 Identities=23% Similarity=0.492 Sum_probs=74.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
++||||++|+..+++.+|..+|+.||.|.+|.++..+ +||||.+....+|.+|+.+|++..+.++.|+|.||..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 5899999999999999999999999999999998776 999999999999999999999999999999999998776
Q ss_pred CCC
Q 014173 362 DKK 364 (429)
Q Consensus 362 ~~~ 364 (429)
.+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 654
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.02 E-value=7.5e-10 Score=97.74 Aligned_cols=144 Identities=22% Similarity=0.323 Sum_probs=110.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccC----CCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE--
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR-- 179 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~-- 179 (429)
.-.|.+++||+++++.++.+||.+- |.+..|.++..++ |+..|-|||.|...+.|..||.. |...|.-|.|.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3468899999999999999999632 3456777777655 99999999999999999999964 33222222221
Q ss_pred -----------------------------------EeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeE--EEEeeC
Q 014173 180 -----------------------------------CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET--IELIKD 222 (429)
Q Consensus 180 -----------------------------------v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~--~~~~~d 222 (429)
|-..+.+.+|.+++||+..+.++|..+|..|...|.. +.++.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~- 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL- 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE-
Confidence 2223345688999999999999999999999766655 55555
Q ss_pred CCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 014173 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (429)
Q Consensus 223 ~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 253 (429)
...++..|-|||+|.+.+.|..|....++.
T Consensus 318 -N~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 318 -NGQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -cCCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 467899999999999999998888776543
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.01 E-value=3.8e-09 Score=100.21 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=107.9
Q ss_pred ccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceee-----
Q 014173 191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS----- 265 (429)
Q Consensus 191 v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~----- 265 (429)
++.++++....+++++|...- +....+..+ +-.....|-++|.|.....+.+|++.-. ...-.+.+.+.
T Consensus 316 ~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~---~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 316 YKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNP---SDDVNRPFQTGPPGNL 389 (944)
T ss_pred ecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCc---hhhhhcceeecCCCcc
Confidence 455666777778888877554 444444444 1223337889999999999999976422 11111111111
Q ss_pred -e---------------------------cCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeE-EEecC
Q 014173 266 -W---------------------------ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPP 316 (429)
Q Consensus 266 -~---------------------------~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~-v~i~~ 316 (429)
| +................+|||..||..++...+.++|...-.|++ |.|.+
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~ 469 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR 469 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEecc
Confidence 0 000000000111233589999999999999999999998767766 78877
Q ss_pred CCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 317 GKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 317 ~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...+. ++.|||.|....++..|...-+.+.++.+.|+|.-.
T Consensus 470 ~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 470 LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred CCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 77666 899999999999999998866777888889999654
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.2e-10 Score=96.51 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=76.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
++.+.|||.-|.+-++.++|.-+|+.||.|..+.|+++..+. -.||||+|.+.+++.+|.-+|.+..|+.++|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 445799999999999999999999999999999999988665 789999999999999999999999999999999998
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.+-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 76554
No 122
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=1.7e-09 Score=100.15 Aligned_cols=83 Identities=24% Similarity=0.480 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
....+++|||.+|...+...+|+.+|++||+|+-.+++.+..+--.+.|+||++.+.+.|.+||..|+.+.|+|+-|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34567899999999999999999999999999999999988777788899999999999999999999999999999999
Q ss_pred ecC
Q 014173 182 LSE 184 (429)
Q Consensus 182 ~~~ 184 (429)
.++
T Consensus 481 kaK 483 (940)
T KOG4661|consen 481 KAK 483 (940)
T ss_pred ecc
Confidence 876
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.95 E-value=6.2e-09 Score=98.82 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=67.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCe-eEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
+.|-+.|+|++++-++|.+||..|-.+ .+|+|..+..+. .|-|.|-|++.++|.+|...|+++.|..+.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 579999999999999999999999655 477887777777 89999999999999999999999999999999875
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.3e-09 Score=93.76 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=68.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc-CCccCCceEE
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKGKTIR 179 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~g~~l~ 179 (429)
......+||||++|-..+++.+|+++|-+||.|..|++... +++|||+|.+..+|..|...+- ...|.|++|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34456689999999999999999999999999999999765 5699999999999999886644 4568999999
Q ss_pred EeecCC
Q 014173 180 CSLSET 185 (429)
Q Consensus 180 v~~~~~ 185 (429)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=3e-09 Score=86.53 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=72.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcc-CCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
.....++|..+|..+.+.+|..+|.+| |.|..+++-+++.+ + ||||||+|++.+.|..|.+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 334679999999999999999999998 67888888666644 4 99999999999999999999999999999999999
Q ss_pred ccCC
Q 014173 357 AKPQ 360 (429)
Q Consensus 357 a~~~ 360 (429)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8876
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.93 E-value=8.8e-09 Score=84.51 Aligned_cols=84 Identities=25% Similarity=0.459 Sum_probs=70.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecC-CCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEE
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP-GKSGK--RDFGFIHYAERSSALKAVKDTEKYEID---GQVLEV 354 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~-~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~---g~~l~v 354 (429)
..++|||.+||.++...+|..+|..|-......|.. ++.++ +.+|||.|.+...|.+|+.+|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 368999999999999999999999987666554432 33322 789999999999999999999999996 889999
Q ss_pred EeccCCCCCC
Q 014173 355 VLAKPQTDKK 364 (429)
Q Consensus 355 ~~a~~~~~~~ 364 (429)
.+|++...++
T Consensus 113 ElAKSNtK~k 122 (284)
T KOG1457|consen 113 ELAKSNTKRK 122 (284)
T ss_pred eehhcCcccc
Confidence 9998776544
No 127
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.90 E-value=3.4e-09 Score=101.95 Aligned_cols=79 Identities=28% Similarity=0.557 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
..-.++||||+.|+..+++.+|+.+|..||.|.+|.++. ++|||||.+....+|.+|+..|++..+.++.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 334788999999999999999999999999999999965 47899999999999999999999999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
|+..+
T Consensus 491 Wa~g~ 495 (894)
T KOG0132|consen 491 WAVGK 495 (894)
T ss_pred eeccC
Confidence 98753
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=4.1e-09 Score=97.74 Aligned_cols=83 Identities=22% Similarity=0.422 Sum_probs=74.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||.+|...+...+|+.+|++||.|+-.+++.+.... ++|+||++.+..+|.+||..||.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 335889999999999999999999999999998888776443 999999999999999999999999999999999998
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
+....
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 75543
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.87 E-value=4.7e-08 Score=83.93 Aligned_cols=82 Identities=22% Similarity=0.410 Sum_probs=76.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
..+|+|.|||+.++..+|+++|..||.++.+.|-.++.+. .|.|-|.|...++|.+|++.+|+..++|+.+++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3689999999999999999999999999999999999887 999999999999999999999999999999999988766
Q ss_pred CCC
Q 014173 361 TDK 363 (429)
Q Consensus 361 ~~~ 363 (429)
...
T Consensus 163 ~~~ 165 (243)
T KOG0533|consen 163 SQS 165 (243)
T ss_pred ccc
Confidence 544
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.86 E-value=2.4e-08 Score=73.02 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC----CceEE
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK----GKTIR 179 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~l~ 179 (429)
.|||+|+|||...|.+.|.+++.. .|...-+-++.|..++.+.|||||.|.++..|.+....++|..|. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 379999999999999999988854 367778888999999999999999999999999999999999885 34556
Q ss_pred EeecC
Q 014173 180 CSLSE 184 (429)
Q Consensus 180 v~~~~ 184 (429)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66665
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=3.5e-10 Score=109.91 Aligned_cols=137 Identities=25% Similarity=0.294 Sum_probs=116.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
...++||+||++.+.+.+|...|..+|.+..+++....++++.+|+|||.|..++.+.+|+....+.. .|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hh---------
Confidence 34679999999999999999999999999888888777789999999999999999999996544433 33
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcccc
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 255 (429)
+..++|.|+|+..|.+.++.++..+|. +...+++.. ..++++|.++|.|.+..++.++...+....+
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhhhh
Confidence 667899999999999999999999998 777776653 5688999999999999999888776554433
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=4.5e-08 Score=84.07 Aligned_cols=83 Identities=24% Similarity=0.439 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
.+..++|+|.|||+.++..+|+++|..||.+..+.+-.++. |++.|+|-|.|...++|..|++.+++..|.|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34457899999999999999999999999888888777765 99999999999999999999999999999999998877
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=1.9e-09 Score=95.54 Aligned_cols=210 Identities=14% Similarity=0.181 Sum_probs=129.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCC---CCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..|.|.||.+.+|.++|+.||...|+|..++|+.... -......|||.|.+...+..|- .|.++++-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 4799999999999999999999999999999987432 1234568999999999998887 57888887887777654
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcce
Q 014173 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (429)
Q Consensus 184 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (429)
... +-.+. .+|..++. -..+.-+-.| - + |.|.. .++..-+....
T Consensus 87 ~~~-----------~~p~r--~af~~l~~-~navprll~p------d--g-~Lp~~-------------~~lt~~nh~p~ 130 (479)
T KOG4676|consen 87 GDE-----------VIPDR--FAFVELAD-QNAVPRLLPP------D--G-VLPGD-------------RPLTKINHSPN 130 (479)
T ss_pred CCC-----------CCccH--HHHHhcCc-ccccccccCC------C--C-ccCCC-------------CccccccCCcc
Confidence 321 11111 13333332 1111000000 0 0 00000 01101111111
Q ss_pred eeecCCCCCCCchhh--hcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 264 ISWADPKSTPDHSAA--ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 264 ~~~~~~~~~~~~~~~--~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
.-+..|......... ..-.++|+|.+|+..+...++.+.|..+|.|...++.-... ..+|.|.|....+...|+.
T Consensus 131 ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr- 207 (479)
T KOG4676|consen 131 AILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALR- 207 (479)
T ss_pred ceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHHH-
Confidence 111112222111111 11237899999999999999999999999998877654433 3678899999888888988
Q ss_pred hCCceeCCeEEEEEe
Q 014173 342 TEKYEIDGQVLEVVL 356 (429)
Q Consensus 342 l~~~~~~g~~l~v~~ 356 (429)
++|..+.-...++..
T Consensus 208 ~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 208 SHGRERKRQHSRRAI 222 (479)
T ss_pred hcchhhhhhhhhhhh
Confidence 477766533333333
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.70 E-value=1.1e-07 Score=69.49 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=68.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhc--cCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 014173 283 KALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID----GQVLEV 354 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~----g~~l~v 354 (429)
++|.|+|||...|.++|.+++.. .|...-+.++.|..++ .|||||.|.++..|.+-...++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998876 4677778888776554 899999999999999999999999885 678899
Q ss_pred EeccCCC
Q 014173 355 VLAKPQT 361 (429)
Q Consensus 355 ~~a~~~~ 361 (429)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9998653
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=3.9e-08 Score=91.71 Aligned_cols=71 Identities=25% Similarity=0.455 Sum_probs=65.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 353 (429)
.+.++|+|-|||..++.++|+.+|+.||.|+.|+..+.+ +|.+||+|-+..+|++|++.|++..|.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 556899999999999999999999999999998776655 47999999999999999999999999999998
No 136
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=5.2e-08 Score=84.09 Aligned_cols=82 Identities=29% Similarity=0.448 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
..+.+.+||+|+.+.+|.+++..+|+.||.|..|.++.+..++.++||+||+|.+.+.+..|+. |++..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3466789999999999999999999999999999999999999999999999999999999996 999999999999887
Q ss_pred cCC
Q 014173 183 SET 185 (429)
Q Consensus 183 ~~~ 185 (429)
...
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 653
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.64 E-value=9.6e-08 Score=83.76 Aligned_cols=80 Identities=26% Similarity=0.375 Sum_probs=73.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCee--------EEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l 352 (429)
+..|||.|||.++|.+++.++|++||.|. .|+|.++..|. ||=|.|.|-..+++.-|+..|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 46799999999999999999999999875 58899999888 9999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 014173 353 EVVLAKPQT 361 (429)
Q Consensus 353 ~v~~a~~~~ 361 (429)
+|..|+-+.
T Consensus 214 rVerAkfq~ 222 (382)
T KOG1548|consen 214 RVERAKFQM 222 (382)
T ss_pred EEehhhhhh
Confidence 999998554
No 138
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.64 E-value=2e-08 Score=84.39 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCC--------CCcee----EEEEEecCHHHHHHHHHHhcCCc
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------GESKG----FAFVSFRSKEFAKKAIDELHSKE 172 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~--------~~~~g----~afV~f~~~~~a~~a~~~l~~~~ 172 (429)
....|||++||+.+...-|+++|+.||.|-+|.|.+...+ |.+++ -|||+|.+...|+++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999999876554 22222 38999999999999999999999
Q ss_pred cCCceE
Q 014173 173 LKGKTI 178 (429)
Q Consensus 173 ~~g~~l 178 (429)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 139
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.63 E-value=3.8e-08 Score=88.12 Aligned_cols=82 Identities=33% Similarity=0.622 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
....|||++||.++++.+|+++|.+||.|..+.++.+..+.+++||+||.|.+.+.+.+++ ...-..|.|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 4568999999999999999999999999999999999999999999999999999999999 458888999999999988
Q ss_pred Ccc
Q 014173 185 TKN 187 (429)
Q Consensus 185 ~~~ 187 (429)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 754
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.63 E-value=2.1e-07 Score=64.40 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=48.9
Q ss_pred ceEEEccCCCCCCHHH----HHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 283 KALYVKNIPDNTSTEK----IKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~----L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
..|+|.|||.+.+... |++++..|| .|..|. . +.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~----~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----G----GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------T----T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----C----CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 3699999999998866 566777887 666663 1 67999999999999999999999999999999998
Q ss_pred cCC
Q 014173 358 KPQ 360 (429)
Q Consensus 358 ~~~ 360 (429)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 543
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.63 E-value=7.5e-08 Score=89.63 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
...+|||+|||++++..+|+++|++||.|....|......+....||||+|.+..++..||.+ +-..|.+++|.|...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345699999999999999999999999999999877553345558999999999999999965 6778899999987665
Q ss_pred C
Q 014173 185 T 185 (429)
Q Consensus 185 ~ 185 (429)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.62 E-value=2.1e-07 Score=64.37 Aligned_cols=70 Identities=26% Similarity=0.528 Sum_probs=48.9
Q ss_pred CEEEEcCCCCCCCHHHHH----HhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 107 SEVFIGGLPKDASEEDLR----DLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~----~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
+.|+|.|||.+.....|+ .++..|| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999999888765 4555776 776662 3579999999999999999999999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88643
No 143
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=8e-08 Score=80.62 Aligned_cols=73 Identities=23% Similarity=0.453 Sum_probs=67.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
..|||++||+.+.+.+|..||..||.|..|.+.. ||+||+|.+..+|..|+..||+..|.|-.+.|.++...+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 3699999999999999999999999999998854 789999999999999999999999999999999988654
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.9e-08 Score=81.30 Aligned_cols=79 Identities=23% Similarity=0.355 Sum_probs=72.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||.|+...++++-|.++|-+.|.|.+|.|+.++.+.-.||||.|.+.....-|+..+||..+.+..|.|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3457999999999999999999999999999999999998883399999999999999999999999999988887743
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.55 E-value=7.7e-08 Score=80.77 Aligned_cols=135 Identities=8% Similarity=0.175 Sum_probs=93.4
Q ss_pred CCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHh
Q 014173 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (429)
Q Consensus 225 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~ 304 (429)
..+..++++|+.|.....-.++-..-+.+ .+....++......-....-..-.....+||.+-|...++.+.|-..|.
T Consensus 135 ~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~ 212 (290)
T KOG0226|consen 135 RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK 212 (290)
T ss_pred CCCccCcccccCcchhhhhhhhccccccc--cccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHH
Confidence 34566778888876544433333222221 2222222222221111111122224457899999999999999999999
Q ss_pred ccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 305 RHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 305 ~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
+|-.....++++++.+. +||+||.|.+..++.+|+..|+|..++.++|+++...-+.
T Consensus 213 Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 213 KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99888888888887554 9999999999999999999999999999999987665443
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.54 E-value=2e-08 Score=90.02 Aligned_cols=157 Identities=18% Similarity=0.306 Sum_probs=125.6
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeee
Q 014173 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (429)
Q Consensus 187 ~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 266 (429)
+.+|++||.+.++..+|..+|....-+...-.++ ..+|+||.+.+...|.++...+++. ..+.|..+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 4689999999999999999998764322222222 3689999999999999999988764 567788887776
Q ss_pred cCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEec-CCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 014173 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (429)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~-~~~~~~kg~afV~F~~~~~A~~A~~~l~~~ 345 (429)
.-++. ..++.+.|.|+|...-++.|-.+...||.+..+..+ .+..+ ...-|+|.+.+.+..||..|+|.
T Consensus 73 sv~kk--------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 73 SVPKK--------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hhhHH--------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHHHHHHHHhhcch
Confidence 65554 344679999999999999999999999999888543 33332 34567899999999999999999
Q ss_pred eeCCeEEEEEeccCCCC
Q 014173 346 EIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 346 ~~~g~~l~v~~a~~~~~ 362 (429)
.+....++|.|......
T Consensus 143 Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDEQN 159 (584)
T ss_pred HhhhhhhhcccCchhhh
Confidence 99999999999876554
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.53 E-value=8.2e-08 Score=80.60 Aligned_cols=84 Identities=25% Similarity=0.448 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
..+....+||.+.|..+++.+-|...|.+|-.....++++++.||+++||+||.|.+..++..|+..++|..+..++|.+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eecC
Q 014173 181 SLSE 184 (429)
Q Consensus 181 ~~~~ 184 (429)
..+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 6554
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.50 E-value=6.1e-07 Score=77.50 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=74.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...+.+||+|+.+.+|.+++...|+.||.|..|.|+.++... |||+||+|.+...+..|+. |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 455799999999999999999999999999999999988664 9999999999999999999 9999999999999998
Q ss_pred cCC
Q 014173 358 KPQ 360 (429)
Q Consensus 358 ~~~ 360 (429)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 765
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.46 E-value=9.9e-07 Score=78.31 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=73.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCee--------EEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g 349 (429)
....+|||-+||..++.++|.++|.+||.|. .|.|.+++.+. |+-|.|.|.+...|+.|+..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4557899999999999999999999999886 45666666554 9999999999999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 014173 350 QVLEVVLAKPQTD 362 (429)
Q Consensus 350 ~~l~v~~a~~~~~ 362 (429)
..|+|.+|..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999987654
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.41 E-value=5.8e-07 Score=86.07 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecC---CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK---ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
.+..++|||+||++.++++.|...|..||+|..|+|.--. ...+.+-|+||-|-+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4467899999999999999999999999999999986532 2346677999999999999999999999999999999
Q ss_pred EeecC
Q 014173 180 CSLSE 184 (429)
Q Consensus 180 v~~~~ 184 (429)
+-|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99874
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=84.31 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=74.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC----CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS----GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~----~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
+.++.|||+||++.+++..|...|..||.|..|+|+..+. .+ +.|+||-|-+..+|.+|+..|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 5578999999999999999999999999999998875542 12 789999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 014173 355 VLAKPQTDK 363 (429)
Q Consensus 355 ~~a~~~~~~ 363 (429)
-|++.-.-+
T Consensus 252 gWgk~V~ip 260 (877)
T KOG0151|consen 252 GWGKAVPIP 260 (877)
T ss_pred ccccccccC
Confidence 999765443
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.31 E-value=1.5e-06 Score=65.32 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=46.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc-----eeCCeEEEEEe
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY-----EIDGQVLEVVL 356 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~-----~~~g~~l~v~~ 356 (429)
..|+|.+++..++.++|+++|++||.|..|.+.++. ..|||.|.+.+.|..|+..+.-. .|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 478999999999999999999999999999998877 57999999999999999887543 56676666655
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=6.2e-06 Score=72.22 Aligned_cols=88 Identities=19% Similarity=0.433 Sum_probs=66.9
Q ss_pred CEEEEcCCCCCCCHHHH----H--HhhccCCCeEEEEEeecCCCC-CceeE--EEEEecCHHHHHHHHHHhcCCccCCce
Q 014173 107 SEVFIGGLPKDASEEDL----R--DLCEPIGDVFEVRLMKDKESG-ESKGF--AFVSFRSKEFAKKAIDELHSKELKGKT 177 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l----~--~~f~~~G~i~~v~~~~~~~~~-~~~g~--afV~f~~~~~a~~a~~~l~~~~~~g~~ 177 (429)
.-+||-+||+.+..+++ + ++|.+||.|..|.+-+.-.+. ...+. .||.|.+.++|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 35899999998877762 2 699999999988775543111 11122 499999999999999999999999999
Q ss_pred EEEeecCCc-ccccccCC
Q 014173 178 IRCSLSETK-NRLFIGNV 194 (429)
Q Consensus 178 l~v~~~~~~-~~l~v~nl 194 (429)
|+..+...+ ++.|++|+
T Consensus 195 lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 195 LKATYGTTKYCTSYLRNA 212 (480)
T ss_pred EeeecCchHHHHHHHcCC
Confidence 999997765 44455554
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.10 E-value=9.3e-06 Score=61.11 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 171 (429)
++.|+|.+++..++-++|+++|+.||.|..|.+.+.. ..|||.|.+.+.|++|+..+.-.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 3579999999999999999999999999999886543 36999999999999999876644
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.05 E-value=3.9e-06 Score=74.62 Aligned_cols=83 Identities=33% Similarity=0.512 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCe--------EEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDV--------FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i--------~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 176 (429)
...+|||-+||..++..+|.++|.++|.| -.|+|.+++.|+++|+-|.|.|.+...|+.|+.-+++..+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 45689999999999999999999999977 3577888999999999999999999999999999999999999
Q ss_pred eEEEeecCCcc
Q 014173 177 TIRCSLSETKN 187 (429)
Q Consensus 177 ~l~v~~~~~~~ 187 (429)
+|+|.++....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887544
No 156
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.97 E-value=7.8e-05 Score=67.79 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=56.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCC---CC---C---------CCcEEEEEeCCHHHHHHHHHHhCC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG---KS---G---------KRDFGFIHYAERSSALKAVKDTEK 344 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~---~~---~---------~kg~afV~F~~~~~A~~A~~~l~~ 344 (429)
.++++|.+.|||.+-.-+-|.++|+.+|.|+.|+|+.. .. + .+-+|+|+|.+.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46799999999998888999999999999999999866 11 0 145899999999999999998864
Q ss_pred c
Q 014173 345 Y 345 (429)
Q Consensus 345 ~ 345 (429)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.89 E-value=3.6e-05 Score=67.55 Aligned_cols=81 Identities=23% Similarity=0.470 Sum_probs=65.4
Q ss_pred cccceEEEccCCCCCCHHH----H--HHHHhccCCeeEEEecCCCCC--C-CcE--EEEEeCCHHHHHHHHHHhCCceeC
Q 014173 280 SQVKALYVKNIPDNTSTEK----I--KELFQRHGEVTKVVMPPGKSG--K-RDF--GFIHYAERSSALKAVKDTEKYEID 348 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~----L--~~~F~~~G~i~~v~i~~~~~~--~-kg~--afV~F~~~~~A~~A~~~l~~~~~~ 348 (429)
.+.+-+||-+||+.+-.++ | .++|.+||.|..|.|-+.... + .+. .||+|.+.++|.+||.+.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3346799999998877666 2 479999999999998765521 1 232 399999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 014173 349 GQVLEVVLAKPQ 360 (429)
Q Consensus 349 g~~l~v~~a~~~ 360 (429)
||.|+..|...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999997643
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.86 E-value=4.8e-05 Score=49.29 Aligned_cols=52 Identities=25% Similarity=0.511 Sum_probs=43.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHH
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (429)
+.|.|.+.+....+. |..+|..||.|..+.+.... .+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 468899999777655 55588899999999998444 68999999999999985
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.83 E-value=2.6e-05 Score=68.71 Aligned_cols=79 Identities=19% Similarity=0.388 Sum_probs=70.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.-++||+||-|.+|.++|.+.+...| .+.++++..++.+|.+||||+|...+..+.++.++-|..+.|+|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35799999999999999999998887 6788899999999999999999999999999999999999999987766544
Q ss_pred C
Q 014173 184 E 184 (429)
Q Consensus 184 ~ 184 (429)
+
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=7.4e-05 Score=70.21 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=63.3
Q ss_pred ceEEEccCCCCCCH------HHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 014173 283 KALYVKNIPDNTST------EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID-GQVLEV 354 (429)
Q Consensus 283 ~~l~v~nlp~~~te------~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v 354 (429)
.+|+|.|+|.--.. .-|..+|+++|.|+.+.++.+..++ +||.|++|.+..+|..|++.|||+.|+ .+++.|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 58999999943222 3467899999999999999888777 999999999999999999999999886 667777
Q ss_pred Eec
Q 014173 355 VLA 357 (429)
Q Consensus 355 ~~a 357 (429)
..-
T Consensus 139 ~~f 141 (698)
T KOG2314|consen 139 RLF 141 (698)
T ss_pred ehh
Confidence 653
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.78 E-value=1.6e-05 Score=71.31 Aligned_cols=81 Identities=31% Similarity=0.598 Sum_probs=73.5
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVF-IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~-v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++| |.+|+..++.++|+.+|..+|.|..+++..+..++.++|||||.|.....+..++.. ....+.++++.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 334555 999999999999999999999999999999999999999999999999999999976 788899999999887
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.+.
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 754
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.74 E-value=0.00018 Score=53.22 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=51.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEE-ecCCC--------CCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVV-MPPGK--------SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-V 351 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~-i~~~~--------~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~-~ 351 (429)
.+.|.|-+.|.. ....|.++|++||.|.... +.+.. .....+..|+|.++.+|.+||.. ||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 467999999987 5566778999999998775 22210 01147999999999999999995 99999886 5
Q ss_pred EEEEecc
Q 014173 352 LEVVLAK 358 (429)
Q Consensus 352 l~v~~a~ 358 (429)
+-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 163
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.74 E-value=8.1e-06 Score=73.69 Aligned_cols=136 Identities=23% Similarity=0.353 Sum_probs=102.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCCceEEEeecCCc
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRCSLSETK 186 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~~~ 186 (429)
.||++||.+.++..+|..+|...-.-.+-.++ ...||+||...+..-|.+|++.++|+. +.|+++.|..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 58999999999999999999754111111111 135799999999999999999999985 89999999887765
Q ss_pred ----ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEe-eCCCCCCCCccEEEEEecChHHHHHHHHHHhcccc
Q 014173 187 ----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255 (429)
Q Consensus 187 ----~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~-~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 255 (429)
+.+-|+|+|+....+-|..++..+|. +..|..+ .++. .--.-|+|.+.+.+..++..+++..+
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt~~e-----tavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNTDSE-----TAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhccchH-----HHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 67899999999999999999999997 6666543 2221 11123466777778888888776544
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.70 E-value=0.00023 Score=62.93 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=62.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccC--CeeEEEecCCC-CCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeE-EEEEe
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQV-LEVVL 356 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~-l~v~~ 356 (429)
..++||+||-+.+|+++|.+.....| .|..++++.++ ++. ||||+|-..+..+.++.++.|-.+.|.|.. +.+.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35899999999999999999998877 56777777665 344 999999999999999999999999998874 44444
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00015 Score=47.02 Aligned_cols=52 Identities=19% Similarity=0.511 Sum_probs=43.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 165 (429)
+.|-|.+.|++..+ .+..+|..||.|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 57899999988875 5556999999999998852 2448999999999999985
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.60 E-value=4e-05 Score=64.92 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=60.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC----------C--C--cEEEEEeCCHHHHHHHHHHhCCcee
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----------K--R--DFGFIHYAERSSALKAVKDTEKYEI 347 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~----------~--k--g~afV~F~~~~~A~~A~~~l~~~~~ 347 (429)
...||+++||+.+...-|+++|+.||.|-+|.|-+.... + . .-|+|+|.+...|.++...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999999765432 1 1 2379999999999999999999999
Q ss_pred CCeE
Q 014173 348 DGQV 351 (429)
Q Consensus 348 ~g~~ 351 (429)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.00024 Score=60.41 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCccCCceEEEeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecC
Q 014173 160 FAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239 (429)
Q Consensus 160 ~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~ 239 (429)
-|..|...|.+....|+.|+|.++.. ..|+|.||+..++.+.+...|+.||+ |....++.| ..++..+-++|.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 46667778899999999999999998 99999999999999999999999998 777666665 346677788999999
Q ss_pred hHHHHHHHHHHhcccc
Q 014173 240 NACADYSRQKMLNANF 255 (429)
Q Consensus 240 ~~~a~~a~~~l~~~~~ 255 (429)
...+.+|+...+...+
T Consensus 82 k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 82 KPNARKAARRCREGGF 97 (275)
T ss_pred chhHHHHHHHhccCcc
Confidence 9999999988755443
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.45 E-value=0.00078 Score=52.90 Aligned_cols=58 Identities=22% Similarity=0.421 Sum_probs=47.1
Q ss_pred HHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 297 ~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
.+|.+.|..||.|.=|++..+. -+|+|.+-..|.+|+. ++|..|+|+.|+|++..+.=
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~------mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDT------MWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTC------EEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCCe------EEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 3677889999999988888754 8999999999999998 79999999999999987653
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.44 E-value=0.00039 Score=60.07 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=58.4
Q ss_pred ceEEEccCC--CCCC---HHHHHHHHhccCCeeEEEecCCCCCC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 283 KALYVKNIP--DNTS---TEKIKELFQRHGEVTKVVMPPGKSGK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 283 ~~l~v~nlp--~~~t---e~~L~~~F~~~G~i~~v~i~~~~~~~---kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
+.|.+.|+- -.+. +.+++.-|.+||.|..|.|.-..+.. ---.||+|...++|.+|+-.|||+.|+||.++.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 345555552 3333 35688999999999999877655432 234799999999999999999999999999998
Q ss_pred Eecc
Q 014173 355 VLAK 358 (429)
Q Consensus 355 ~~a~ 358 (429)
.|-.
T Consensus 362 ~Fyn 365 (378)
T KOG1996|consen 362 CFYN 365 (378)
T ss_pred eecc
Confidence 7754
No 170
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.35 E-value=0.00031 Score=63.22 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=62.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-----CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-----kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
..|.|.||.+.++.++++.||...|.|..+.|.+..... .-.|||.|.+...+..|.+ |.++.|=++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999999988744321 5689999999999999988 6777777776666554
Q ss_pred c
Q 014173 358 K 358 (429)
Q Consensus 358 ~ 358 (429)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.34 E-value=0.00011 Score=62.58 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=54.1
Q ss_pred HHHHHHHh-ccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 297 EKIKELFQ-RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 297 ~~L~~~F~-~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
++|...|+ +||.|..+.|..+..-. +|-+||.|...++|.+|+..||+.+|.|++|...+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555555 89999999887776555 89999999999999999999999999999999988753
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00056 Score=64.52 Aligned_cols=77 Identities=32% Similarity=0.430 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCC--CCHH----HHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC-Cce
Q 014173 105 NGSEVFIGGLPKD--ASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKT 177 (429)
Q Consensus 105 ~~~~l~v~nLp~~--~t~~----~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~ 177 (429)
-.+.|+|.|+|.- ...+ -|..+|+++|+|+.+.++.+.. |.++||.|++|.+..+|..|++.|||..|. .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4578999999963 2233 3457899999999999998887 459999999999999999999999999875 566
Q ss_pred EEEee
Q 014173 178 IRCSL 182 (429)
Q Consensus 178 l~v~~ 182 (429)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.26 E-value=0.00035 Score=66.26 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=65.9
Q ss_pred hcccceEEEccCCCCCCHHHHHHHHhc-cCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 014173 279 ASQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGQVLEV 354 (429)
Q Consensus 279 ~~~~~~l~v~nlp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~---~g~~l~v 354 (429)
...++.|+|.||-...|.-+|+.++.. +|.|...-|.+-+ ..|||.|.+.++|...+.+|||..| +.+.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK----ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK----SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh----cceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 356789999999999999999999995 5566665333333 5699999999999999999999977 6789999
Q ss_pred EeccCCCC
Q 014173 355 VLAKPQTD 362 (429)
Q Consensus 355 ~~a~~~~~ 362 (429)
.|+.....
T Consensus 517 df~~~del 524 (718)
T KOG2416|consen 517 DFVRADEL 524 (718)
T ss_pred eecchhHH
Confidence 99876544
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.24 E-value=0.00028 Score=64.31 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeec---CC--CCCc--------eeEEEEEecCHHHHHHHHHHhcCC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD---KE--SGES--------KGFAFVSFRSKEFAKKAIDELHSK 171 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~---~~--~~~~--------~g~afV~f~~~~~a~~a~~~l~~~ 171 (429)
.+++|.+.|||.+-.-+.|.++|..+|.|..|+|+.- +. .+.. +-+|+|+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999888999999999999999999875 22 2222 446999999999999999877554
Q ss_pred c
Q 014173 172 E 172 (429)
Q Consensus 172 ~ 172 (429)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.22 E-value=0.00066 Score=64.48 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=64.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc---CCce
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKT 177 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~ 177 (429)
..+.+..|+|.||=.-.|.-.|+.++. .+|.|...+| ++ -+..|||.|.+.+.|...+.+|||..| +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 344667899999999999999999998 5667776654 22 255799999999999999999999987 5788
Q ss_pred EEEeecCCc
Q 014173 178 IRCSLSETK 186 (429)
Q Consensus 178 l~v~~~~~~ 186 (429)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 998887654
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.18 E-value=0.0014 Score=51.56 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=52.7
Q ss_pred CCCCCCCEEEEcCCCCC-----CCHH----HHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 014173 101 ALPPNGSEVFIGGLPKD-----ASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~-----~t~~----~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 171 (429)
.--|+..||.|.=+.+. .-.+ +|.+.|..||.|+-||++.+ .-+|.|.+-.+|.+|+ .++|.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~ 92 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGI 92 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCS
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCc
Confidence 34455667777765511 2222 56678899999888887654 4899999999999999 68999
Q ss_pred ccCCceEEEeecCC
Q 014173 172 ELKGKTIRCSLSET 185 (429)
Q Consensus 172 ~~~g~~l~v~~~~~ 185 (429)
.+.|+.|+|.+..+
T Consensus 93 ~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 93 QVNGRTLKIRLKTP 106 (146)
T ss_dssp EETTEEEEEEE---
T ss_pred EECCEEEEEEeCCc
Confidence 99999999988765
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.0019 Score=55.11 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=73.8
Q ss_pred HHHHHHHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-
Q 014173 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321 (429)
Q Consensus 243 a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~- 321 (429)
|..|...|.. ....++.+.+.++.. ..|+|.||...++-+.|.+.|+.||.|....+..+-.++
T Consensus 7 ae~ak~eLd~--~~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~ 71 (275)
T KOG0115|consen 7 AEIAKRELDG--RFPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP 71 (275)
T ss_pred HHHHHHhcCC--CCCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc
Confidence 4444455533 345678888888654 479999999999999999999999999876665555454
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCc----eeCCeEEEEEe
Q 014173 322 RDFGFIHYAERSSALKAVKDTEKY----EIDGQVLEVVL 356 (429)
Q Consensus 322 kg~afV~F~~~~~A~~A~~~l~~~----~~~g~~l~v~~ 356 (429)
.+-++|.|...-.|.+|+..+.-. ...++++-|.-
T Consensus 72 t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 72 TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 788999999999999999988532 33455555533
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.17 E-value=0.00011 Score=62.43 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=51.5
Q ss_pred HHHHhhc-cCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 122 DLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 122 ~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+|...|. +||.|..+.++.+.. -.-.|-+||.|...++|.+|+..||+..+.|++|...++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444444 899999998766542 4678899999999999999999999999999999987765
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.14 E-value=0.0021 Score=47.63 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=51.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEe-ecC------CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM-KDK------ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~-~~~------~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 177 (429)
..+.|.|=+.|+.. ...|..+|++||.|++..-. ++. ..-....+..|.|.++.+|.+||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 34679999999985 45788899999999877500 000 001123489999999999999994 5999999876
Q ss_pred EE-Eeec
Q 014173 178 IR-CSLS 183 (429)
Q Consensus 178 l~-v~~~ 183 (429)
|. |.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 64 5554
No 180
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.002 Score=60.51 Aligned_cols=64 Identities=31% Similarity=0.440 Sum_probs=59.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 167 (429)
.+.+||||++||.-++.++|..+|. -||.|..|-|=.|+.-+.++|-|-|.|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4678999999999999999999998 799999999999977789999999999999999999964
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.50 E-value=0.016 Score=40.61 Aligned_cols=57 Identities=23% Similarity=0.468 Sum_probs=41.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 170 (429)
.....+|. +|..+...||.++|+.||.|.--.| .+ ..|||.....+.|..++..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 34555666 9999999999999999999854443 33 2699999999999999977753
No 182
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.43 E-value=0.0012 Score=65.99 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=68.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
..+++||++||+..+++.+|+..|..+|.|..|.|-..+-+. ..|+||.|.+...+-+|+..+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 446899999999999999999999999999999887765444 6799999999999999999999988876666666664
No 183
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.02 Score=54.73 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=58.6
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccC----CCeEEEEEeecCC----------CCC---------------------
Q 014173 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDKE----------SGE--------------------- 146 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~i~~v~~~~~~~----------~~~--------------------- 146 (429)
...+++|-|.||.|+ +...+|.-+|..| |.|.+|.|+.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 446788999999995 8889999988776 5899999877421 121
Q ss_pred ----------------ceeEEEEEecCHHHHHHHHHHhcCCccCCc
Q 014173 147 ----------------SKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (429)
Q Consensus 147 ----------------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 176 (429)
..-||.|+|.+...|.+..+.+.|..+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 123799999999999999999999988643
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.32 E-value=0.011 Score=51.48 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=57.4
Q ss_pred CCEEEEcCC--CCCCC---HHHHHHhhccCCCeEEEEEeecCCCCCc-eeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 106 GSEVFIGGL--PKDAS---EEDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 106 ~~~l~v~nL--p~~~t---~~~l~~~f~~~G~i~~v~~~~~~~~~~~-~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
.+.|.++|. +-.+. +.+++.-+.+||.|..|.|...+.--.. .--.||+|...++|.+|+-.|||..|.|+.++
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344666665 22333 3467788999999999998776531111 12389999999999999999999999999987
Q ss_pred Eeec
Q 014173 180 CSLS 183 (429)
Q Consensus 180 v~~~ 183 (429)
..+-
T Consensus 361 A~Fy 364 (378)
T KOG1996|consen 361 ACFY 364 (378)
T ss_pred heec
Confidence 6554
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.25 E-value=0.028 Score=37.31 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=45.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcc---CCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRH---GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~---G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
..|+|.++. .++.++|+.+|..| ....+|..+.+. -|=|-|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 579999996 68889999999998 135677777776 5899999999999999865
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.07 E-value=0.0093 Score=49.63 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc-CCCe---EEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDV---FEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i---~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 175 (429)
..+.|.||+||+.+|++++.+.++. ++.. ..+.-.....+ -....-|||.|.+.+++......++|..+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4568999999999999999998877 6655 23331121111 1122349999999999999999999977643
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.90 E-value=0.045 Score=42.51 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=56.0
Q ss_pred CCCCCCEEEEcCCCCCCC----HHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 014173 102 LPPNGSEVFIGGLPKDAS----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t----~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 177 (429)
..++-.||.|+=|...+. -..+...++.||+|.+|.++- +..|.|.|.+..+|-+|+.+++. ..-|.-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 345667899987766553 334556778999999999864 23699999999999999988665 556777
Q ss_pred EEEeecC
Q 014173 178 IRCSLSE 184 (429)
Q Consensus 178 l~v~~~~ 184 (429)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7777654
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.89 E-value=0.043 Score=52.20 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=57.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhc--cCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEec
Q 014173 283 KALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVLA 357 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a 357 (429)
+.|.|+-||..+..++|+.||.. |-.+++|.+-.+. -.||+|.+..+|+.|.+.|.. ..|.|++|..++.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 66788999999999999999986 6678888775554 369999999999999988764 3678888766554
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.83 E-value=0.036 Score=46.27 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=47.2
Q ss_pred CHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeccCC
Q 014173 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 295 te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~a~~~ 360 (429)
....|+.+|..|+.+..+.+++.- +-..|.|.+.+.|.+|...|+ +..|.|..|+|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999988888777665 458999999999999999999 99999999999999544
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.79 E-value=0.033 Score=43.26 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=55.4
Q ss_pred ccceEEEccCCCCCCH-HH---HHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 281 QVKALYVKNIPDNTST-EK---IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te-~~---L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
+-.+|.|+-|..++.. ++ |...++.||.|.+|.+.-. ..|.|.|.+..+|-.|+.+++. ..-|..++++|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3458888777766643 34 4555677999999988643 4699999999999999999876 66788888887
Q ss_pred cc
Q 014173 357 AK 358 (429)
Q Consensus 357 a~ 358 (429)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 54
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.53 E-value=0.13 Score=38.93 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=51.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g 349 (429)
..+.+...|+.++.+.|..+.+.+- .|..++|+++....+-.+.++|.+...|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555556666677776666654 677889998886667789999999999999999999998864
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=0.074 Score=46.73 Aligned_cols=73 Identities=32% Similarity=0.469 Sum_probs=56.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeE-EEEEeccCCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV-LEVVLAKPQT 361 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~-l~v~~a~~~~ 361 (429)
.-|.|-+.|..- -..|..+|.+||.|++.... .++ .+-+|.|.+.-+|.+||.. ||+.|+|.. |=|.-+..+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ng--NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNG--NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCC--ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 467788888544 34677899999999988776 333 6999999999999999995 999998764 5565555443
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.28 E-value=0.012 Score=54.70 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=62.9
Q ss_pred ccceEEEccCCCCC-CHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 281 QVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 281 ~~~~l~v~nlp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
..+.|-+.-+|..+ +-++|..+|.+||.|..|.+.... --|.|+|.+..+|-.|.. .++..|+++.|+|.|..+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34566677777665 458899999999999999887664 359999999999988887 699999999999999987
Q ss_pred CC
Q 014173 360 QT 361 (429)
Q Consensus 360 ~~ 361 (429)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 44
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.27 E-value=0.18 Score=38.15 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=48.5
Q ss_pred CEEEEcCCCCC-CCHHHHHHhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 014173 107 SEVFIGGLPKD-ASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (429)
Q Consensus 107 ~~l~v~nLp~~-~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 174 (429)
++|.|--.|+. ++-.+|..+...+- .|..++|+++. ..++-.+.+.|.+...|......+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44555555555 45556665555554 67788998875 346667999999999999999999998875
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.21 E-value=0.097 Score=36.79 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=40.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~ 344 (429)
...+|. .|..+-..+|.++|++||.|. |..+.+. -|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhcc
Confidence 345555 999999999999999999864 4444443 699999999999999998863
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.10 E-value=0.12 Score=34.38 Aligned_cols=53 Identities=26% Similarity=0.462 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccC----CCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 168 (429)
..|+|+++. .++.++|+.+|..| ++ ..|.-+-+. .|=|.|.+...|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 369999985 58888999999998 43 466666553 4999999999999999754
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.06 E-value=0.036 Score=46.16 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=52.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhc-cCCe---eEEE--ecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCC----
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQR-HGEV---TKVV--MPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG---- 349 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~-~G~i---~~v~--i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g---- 349 (429)
..+|.|++||+.+|++++...+++ ++.. ..+. ........ -.-|||.|.+.+++..-+..++|+.|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999997776 5544 3333 22211111 3469999999999999999999987732
Q ss_pred -eEEEEEeccCCCC
Q 014173 350 -QVLEVVLAKPQTD 362 (429)
Q Consensus 350 -~~l~v~~a~~~~~ 362 (429)
.+..|.+|.-+..
T Consensus 87 ~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 87 EYPAVVEFAPYQKV 100 (176)
T ss_dssp EEEEEEEE-SS---
T ss_pred CcceeEEEcchhcc
Confidence 4677788776443
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.03 E-value=0.0083 Score=53.60 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=62.8
Q ss_pred cceEEEccCCCCCCHHHH---HHHHhccCCeeEEEecCCCC--CC---CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014173 282 VKALYVKNIPDNTSTEKI---KELFQRHGEVTKVVMPPGKS--GK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L---~~~F~~~G~i~~v~i~~~~~--~~---kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 353 (429)
.+-+||-+|+..+..+.+ ...|.+||.|..|.+..+.. .. ..-++|+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356888888877655544 35899999999999888662 11 33489999999999999999999999999988
Q ss_pred EEeccCC
Q 014173 354 VVLAKPQ 360 (429)
Q Consensus 354 v~~a~~~ 360 (429)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887644
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.93 E-value=0.074 Score=49.44 Aligned_cols=71 Identities=17% Similarity=0.372 Sum_probs=60.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 175 (429)
+...+.|.|--+|..+|..||..|+..+- .|..++++++. -.++-.++|.|++.++|......+||+.+..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33478999999999999999999987654 78999999975 3455579999999999999999999998764
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.81 E-value=0.022 Score=53.10 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLPKDA-SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~~~-t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..+.|-+.-.|+.. +-.+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|. ..++..|+++.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 44567777777764 56789999999999999987433 336999999999998888 56999999999999998
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
++..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8754
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.75 E-value=0.017 Score=51.75 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=62.3
Q ss_pred CEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEeecCC--CC-CceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 107 SEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKE--SG-ESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~~~~~~~--~~-~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
.-+||-+||..+..+.+. ..|.+||.|..|.+.++.. ++ ..--.+||.|...++|..||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888899877655544 5899999999998877652 11 11113899999999999999999999999999888
Q ss_pred eecCCc
Q 014173 181 SLSETK 186 (429)
Q Consensus 181 ~~~~~~ 186 (429)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776654
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.62 E-value=0.087 Score=48.99 Aligned_cols=68 Identities=7% Similarity=0.167 Sum_probs=60.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g 349 (429)
+..|.|-.+|..++-.+|..|+..|- .|.+|+|+++....+-.+.|.|.+..+|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999998864 678999999776667789999999999999999999998864
No 203
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=94.45 E-value=0.11 Score=53.17 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=24.1
Q ss_pred CceeEEEEEecCHHHHHHHHHHhcCCccC
Q 014173 146 ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (429)
Q Consensus 146 ~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 174 (429)
.-+||-||+-..+.....||+.+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 45899999999999999999877765544
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.19 E-value=0.096 Score=49.97 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=57.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC--ccCCceEEE
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRC 180 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v 180 (429)
..|.|.|+-||..+-.++++.||+. |-++++|.+-.+.. =||.|.+..+|+.|++.|... .|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 5578899999999999999999965 77899999866543 699999999999999887643 477777654
Q ss_pred e
Q 014173 181 S 181 (429)
Q Consensus 181 ~ 181 (429)
.
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.85 E-value=0.048 Score=53.19 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=63.2
Q ss_pred hcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 279 ~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
.....+|||+||...+..+-++.+...||.|..+.... |||+.|..+..+.+|+..|+...++|..+.+...
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 35567999999999999999999999999988776543 8999999999999999999999999988877653
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.73 E-value=0.4 Score=32.46 Aligned_cols=56 Identities=7% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 292 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
..++-++|+..+.+|+ -.+| ..++. | -||.|.+..+|.++....++..+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I--~~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRI--RDDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceE--EecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4567889999999983 3334 34553 3 499999999999999999999888877654
No 207
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.64 E-value=0.98 Score=46.02 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHhccCCe-----eEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 292 DNTSTEKIKELFQRHGEV-----TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 292 ~~~te~~L~~~F~~~G~i-----~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
..++...|-.++..-+.| -.|.|.. .|.||+-.. ..|...+..|++..+.|+.|.|..+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 567777777777665544 3555544 478999854 6688999999999999999999988643
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.54 E-value=0.16 Score=42.49 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=46.0
Q ss_pred CHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCccCCceEEEeecC
Q 014173 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCSLSE 184 (429)
Q Consensus 119 t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~ 184 (429)
....|+.+|..|+.+..+.+++.. +-..|.|.+.+.|.+|...|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 347899999999999888887654 248999999999999999999 899999999998874
No 209
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=93.44 E-value=0.17 Score=53.10 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.3
Q ss_pred CCHHHHHHhhccCC
Q 014173 118 ASEEDLRDLCEPIG 131 (429)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (429)
.|-++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 46678888888764
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.94 E-value=0.073 Score=53.37 Aligned_cols=72 Identities=31% Similarity=0.422 Sum_probs=60.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc--CCceEEEeecCC
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSET 185 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~ 185 (429)
+..+.|.+-..+-..|..+|.+||.|.+++..++.+ .|.|.|.+.+.|..|+.+|+|+.+ -|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 344556666678888999999999999999988765 699999999999999999999874 588888888764
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.90 E-value=0.31 Score=42.99 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=53.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE-EeecC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR-CSLSE 184 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~-v~~~~ 184 (429)
.+=|.|-++|+...- -|..+|.+||.|+...... .-.+-+|.|.+.-+|.+||. .+|+.|.|..+. |..+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 345777788876543 5778999999998776543 33489999999999999995 599999887653 44443
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.64 E-value=0.64 Score=32.45 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHhccC-----CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 292 ~~~te~~L~~~F~~~G-----~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
..++..+|..++...+ .|-.|.|.. .|+||+-.. +.|..++..|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4677788888887754 456777755 468999855 5899999999999999999999865
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.55 E-value=0.085 Score=52.91 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=64.9
Q ss_pred eEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEeccCCC
Q 014173 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--DGQVLEVVLAKPQT 361 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~--~g~~l~v~~a~~~~ 361 (429)
+..+.|.+-..+-.-|-.+|..||.|.++..+++- ..|.|.|.+.+.|..|+.+|+|..+ -|-+.+|.+|+.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34556666777778899999999999999988877 5799999999999999999999855 58899999998765
Q ss_pred CCC
Q 014173 362 DKK 364 (429)
Q Consensus 362 ~~~ 364 (429)
.-.
T Consensus 376 ~~e 378 (1007)
T KOG4574|consen 376 MYE 378 (1007)
T ss_pred ccc
Confidence 433
No 214
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=90.88 E-value=0.51 Score=42.43 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=10.4
Q ss_pred CCCCCCCCCCcccccc
Q 014173 397 GTGFGVAAGFQQVHEY 412 (429)
Q Consensus 397 g~g~g~~~~~~~~~~~ 412 (429)
|+|.|++++|+||+++
T Consensus 375 ggG~GGGggyqqp~~~ 390 (465)
T KOG3973|consen 375 GGGRGGGGGYQQPQQQ 390 (465)
T ss_pred CCCCCCCCCCcCchhh
Confidence 3566667778776654
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.62 E-value=1.2 Score=31.05 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=35.8
Q ss_pred CCCCHHHHHHhhccCC-----CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 116 KDASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 116 ~~~t~~~l~~~f~~~G-----~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..++..+|..++...+ .|-.|.+..+ |+||+-... .|..++..|++..+.|++|.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577888888886653 5677777544 789998765 788888899999999999999764
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.02 E-value=0.26 Score=48.33 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=61.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
++..+|||+|+...+..+-++.++..+|-|.+++... |+|..|..+..+..|+..|+...+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567899999999999999999999999888776543 899999999999999999998889888877654
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.75 E-value=2 Score=29.07 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 117 ~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
.++-++|+..+..|+-. +|..++ .| -||.|.+..+|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57888999999999742 333332 22 689999999999999999998887776653
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=1.2 Score=41.09 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=43.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 166 (429)
-.+.|-|.++|.....+||...|..|+.- -.|+-+-+ ..||..|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 45789999999999999999999999742 23333333 269999999999999994
No 219
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.77 E-value=23 Score=31.71 Aligned_cols=171 Identities=14% Similarity=0.199 Sum_probs=101.7
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC------CCCCCCccEEEEEecChHHHHHH----HHHHhccccc
Q 014173 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP------QNPSRNRGFSFVLYYNNACADYS----RQKMLNANFK 256 (429)
Q Consensus 187 ~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~------~~~~~~~g~~fv~f~~~~~a~~a----~~~l~~~~~~ 256 (429)
+.|.+.|+...++--.+...|-.||+ |+++.++.+. ........-..+.|-+.+.+... ++.++.=+..
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 66888899989998889999999998 9999998874 11223334567888888887543 3344433345
Q ss_pred cCCCcceeeecCCCCCC---------C-----------chhhhcccceEEEccCCCCCCHHHHHHHH---hccC----Ce
Q 014173 257 LDGNTPTISWADPKSTP---------D-----------HSAAASQVKALYVKNIPDNTSTEKIKELF---QRHG----EV 309 (429)
Q Consensus 257 ~~~~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~l~v~nlp~~~te~~L~~~F---~~~G----~i 309 (429)
+....+.+.+..-.... . .......+++|.|.=-.....++-+.+.+ ..-+ .|
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYVl 174 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYVL 174 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEEE
Confidence 56666666554321000 0 01112335667765443222333233222 2222 45
Q ss_pred eEEEecCCCCC----CCcEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEEecc
Q 014173 310 TKVVMPPGKSG----KRDFGFIHYAERSSALKAVKDTEKYEID---GQVLEVVLAK 358 (429)
Q Consensus 310 ~~v~i~~~~~~----~kg~afV~F~~~~~A~~A~~~l~~~~~~---g~~l~v~~a~ 358 (429)
.+|.|+..... .+.||.++|-+...|...+.-|...... .+...|+++.
T Consensus 175 EsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 175 ESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 67777654322 1789999999999999999877643222 3444444444
No 220
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=85.95 E-value=1.2 Score=44.72 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=9.2
Q ss_pred EEEcCCCCCCCHHHHHHhh
Q 014173 109 VFIGGLPKDASEEDLRDLC 127 (429)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f 127 (429)
..++.+|--++-++-..++
T Consensus 958 k~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHLL 976 (988)
T ss_pred hccccchhhhhHHHHHHHh
Confidence 3455566444444444443
No 221
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.44 E-value=0.81 Score=32.96 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=44.3
Q ss_pred EEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCC---CchhhhcccceEEEccCCCCCCHHHHHHHH
Q 014173 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP---DHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (429)
Q Consensus 233 ~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nlp~~~te~~L~~~F 303 (429)
|+|+|....-|...++. ......+....+.+...+-.... -........++|.|.|||..++++.|++..
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 57899999888876653 23344555555555443222211 112223456899999999999999998753
No 222
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=84.66 E-value=0.69 Score=42.78 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.3
Q ss_pred CCHHHHHH
Q 014173 118 ASEEDLRD 125 (429)
Q Consensus 118 ~t~~~l~~ 125 (429)
+|.++|+.
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 45666553
No 223
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=84.31 E-value=1.4 Score=39.69 Aligned_cols=12 Identities=25% Similarity=0.205 Sum_probs=5.3
Q ss_pred ccCCCCCCCHHH
Q 014173 191 IGNVPKNWTEDE 202 (429)
Q Consensus 191 v~nl~~~~t~~~ 202 (429)
+...|.+++.-.
T Consensus 154 ~~k~p~Nin~~~ 165 (465)
T KOG3973|consen 154 FPKQPGNINEWK 165 (465)
T ss_pred CCCCCCCchHHH
Confidence 334444555433
No 224
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=83.56 E-value=2.5 Score=36.90 Aligned_cols=80 Identities=20% Similarity=0.457 Sum_probs=49.4
Q ss_pred cceEEEccCCCC------------CCHHHHHHHHhccCCeeEEEecCCC------CCC------CcEE---------EEE
Q 014173 282 VKALYVKNIPDN------------TSTEKIKELFQRHGEVTKVVMPPGK------SGK------RDFG---------FIH 328 (429)
Q Consensus 282 ~~~l~v~nlp~~------------~te~~L~~~F~~~G~i~~v~i~~~~------~~~------kg~a---------fV~ 328 (429)
..+|++.+||-. -++.-|+..|..||.|..|.|+.-. +++ +||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 467888888833 2457799999999999988876321 111 3443 344
Q ss_pred eCCHHHHHHHHHHhCCcee----CC----eEEEEEeccCCC
Q 014173 329 YAERSSALKAVKDTEKYEI----DG----QVLEVVLAKPQT 361 (429)
Q Consensus 329 F~~~~~A~~A~~~l~~~~~----~g----~~l~v~~a~~~~ 361 (429)
|-...--..|+..|.|..+ ++ -.++|.|.++++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 4444444556666666533 22 467777776654
No 225
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=82.79 E-value=2.4 Score=40.07 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=9.8
Q ss_pred CCEEEEcCCCCCCCHHHHH
Q 014173 106 GSEVFIGGLPKDASEEDLR 124 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~ 124 (429)
...||-+-....+.-++|.
T Consensus 316 dYkvftr~fDe~v~aeelc 334 (620)
T COG4547 316 DYKVFTREFDEIVLAEELC 334 (620)
T ss_pred cccccchhhhhhhhHHHhh
Confidence 3456666655554444433
No 226
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.39 E-value=1.8 Score=31.19 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=40.1
Q ss_pred EEEEecCHHHHHHHHHHhcCC-ccCCceEEE---------------eecCCcccccccCCCCCCCHHHHHHH
Q 014173 151 AFVSFRSKEFAKKAIDELHSK-ELKGKTIRC---------------SLSETKNRLFIGNVPKNWTEDEFRKV 206 (429)
Q Consensus 151 afV~f~~~~~a~~a~~~l~~~-~~~g~~l~v---------------~~~~~~~~l~v~nl~~~~t~~~l~~~ 206 (429)
|.|+|....-|.+.++.-.-. .+.+..+.| .....++++.|.+||..+.++.|++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 689999999999998532211 233444433 33446789999999999999998874
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.23 E-value=5.3 Score=38.94 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=62.0
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhcc----CCeeEEEecCCCCC----------------------------------
Q 014173 280 SQVKALYVKNIPD-NTSTEKIKELFQRH----GEVTKVVMPPGKSG---------------------------------- 320 (429)
Q Consensus 280 ~~~~~l~v~nlp~-~~te~~L~~~F~~~----G~i~~v~i~~~~~~---------------------------------- 320 (429)
..+++|-|.||.+ .+...+|.-+|+.| |.|.+|.|.+..-|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4568999999995 56889999999875 58899988533211
Q ss_pred -------------C--CcEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEeccC
Q 014173 321 -------------K--RDFGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLAKP 359 (429)
Q Consensus 321 -------------~--kg~afV~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~ 359 (429)
+ --||.|+|.++..|..+...+.|..|. +..|-++|...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 0 127999999999999999999999986 55677777654
No 228
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.24 E-value=45 Score=31.94 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 014173 202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (429)
Q Consensus 202 ~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (429)
-|-.+|.-||+ | ...|-.|+|.+...+.
T Consensus 246 ~lG~I~EiFGp-V--------------~~P~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 246 ALGQIFEIFGP-V--------------KNPYYVVRFNSEEEIS 273 (483)
T ss_pred cchhhhhhhcc-c--------------CCceEEEecCchhhhh
Confidence 34566777775 2 2346677887776664
No 229
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=79.63 E-value=1.4 Score=44.86 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=7.0
Q ss_pred ChHHHHHHHHHHh
Q 014173 239 NNACADYSRQKML 251 (429)
Q Consensus 239 ~~~~a~~a~~~l~ 251 (429)
+..++..++.++.
T Consensus 400 SA~D~v~al~ALL 412 (622)
T PF02724_consen 400 SASDVVYALTALL 412 (622)
T ss_pred eHHHHHHHHHHHh
Confidence 4455555555554
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.75 E-value=1.3 Score=33.98 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred eEEEccCCCC---------CCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHH
Q 014173 284 ALYVKNIPDN---------TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335 (429)
Q Consensus 284 ~l~v~nlp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A 335 (429)
++.|.|+|.. ++.+.|++.|+.|..+ +|+.+.+..+.+|++.|.|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChHH
Confidence 6777888643 3558899999999776 4666677767789999999865433
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.63 E-value=3 Score=34.22 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=53.1
Q ss_pred ceEEEccCCCCCCH-----HHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEe
Q 014173 283 KALYVKNIPDNTST-----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVVL 356 (429)
Q Consensus 283 ~~l~v~nlp~~~te-----~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~-~l~v~~ 356 (429)
..+.+.+|+..+-. .....+|.+|-...-..+++.. ++.-|.|.+...|..|..+++...|.|+ .++.-|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf----rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF----RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh----ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 35667777644322 2234455555444433444433 5678889999999999999999999998 899988
Q ss_pred ccCCCCCC
Q 014173 357 AKPQTDKK 364 (429)
Q Consensus 357 a~~~~~~~ 364 (429)
+.+.....
T Consensus 87 aQ~~~~~~ 94 (193)
T KOG4019|consen 87 AQPGHPES 94 (193)
T ss_pred ccCCCccc
Confidence 88765443
No 232
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=77.49 E-value=2.6 Score=42.18 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=8.9
Q ss_pred EEEEeCCHHHHHHHHHHhC
Q 014173 325 GFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 325 afV~F~~~~~A~~A~~~l~ 343 (429)
-||..-+.++-..|.+.|=
T Consensus 624 IFcsImsaeDyiDAFEklL 642 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLL 642 (822)
T ss_pred heeeeecchHHHHHHHHHH
Confidence 3444444454445544443
No 233
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=77.25 E-value=1.8 Score=43.97 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=10.3
Q ss_pred EecChHHHHHHHHHHhc
Q 014173 236 LYYNNACADYSRQKMLN 252 (429)
Q Consensus 236 ~f~~~~~a~~a~~~l~~ 252 (429)
.|...-.|..+..++..
T Consensus 394 Gy~~~lSA~D~v~al~A 410 (622)
T PF02724_consen 394 GYRGKLSASDVVYALTA 410 (622)
T ss_pred cCCCceeHHHHHHHHHH
Confidence 34566666666666654
No 234
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=76.93 E-value=1 Score=43.18 Aligned_cols=8 Identities=38% Similarity=0.576 Sum_probs=3.7
Q ss_pred CCCCCCCH
Q 014173 113 GLPKDASE 120 (429)
Q Consensus 113 nLp~~~t~ 120 (429)
|-|...+.
T Consensus 534 napkra~s 541 (615)
T KOG0526|consen 534 NAPKRATS 541 (615)
T ss_pred CCCccchh
Confidence 44544443
No 235
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=76.63 E-value=0.5 Score=45.32 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
..++||++|+++.++-.+|..+|+.+--+..+-+.....-.....++||.|+---...-|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 45789999999999999999999998766666654433223455679999998888888888888876654433
No 236
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.38 E-value=2.1 Score=34.61 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=62.0
Q ss_pred CccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCC-CCHHHHHHHHhccC
Q 014173 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHG 307 (429)
Q Consensus 229 ~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~te~~L~~~F~~~G 307 (429)
..++..+.|.+..++..++. ..+..+.+..+.+..-.+.............--|.|.|||.. .+++-|+.+.+.+|
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 35688899999999876665 345556666665554443332222111122344778999955 78889999999999
Q ss_pred CeeEEEecCCCCCCCcEEEE
Q 014173 308 EVTKVVMPPGKSGKRDFGFI 327 (429)
Q Consensus 308 ~i~~v~i~~~~~~~kg~afV 327 (429)
.+..+...........|+-|
T Consensus 131 ~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 131 EPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred CeEEEEcCCCCcccccEEEE
Confidence 99999876655433334443
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=75.84 E-value=10 Score=27.12 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=43.5
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
.-|+--++..++..+|+..++. || .|..|....-..+- --|||.+..-..|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHHhh
Confidence 4566667889999999999998 77 67777665544332 35999999988888876654
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=75.22 E-value=12 Score=26.29 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=43.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
.-|+-.++..++..+|+..++. || .|..|....-+.+ .--|||++..-..|..+-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~-~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG-EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-ceEEEEEECCCCcHHHHHHhh
Confidence 4677778889999999999988 66 6677765444422 235999999888888776554
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.76 E-value=1.1 Score=39.01 Aligned_cols=67 Identities=28% Similarity=0.486 Sum_probs=46.0
Q ss_pred CEEEEcCCCCC------------CCHHHHHHhhccCCCeEEEEEeecC-----CCCCc-----eeE---------EEEEe
Q 014173 107 SEVFIGGLPKD------------ASEEDLRDLCEPIGDVFEVRLMKDK-----ESGES-----KGF---------AFVSF 155 (429)
Q Consensus 107 ~~l~v~nLp~~------------~t~~~l~~~f~~~G~i~~v~~~~~~-----~~~~~-----~g~---------afV~f 155 (429)
.||++.+||-. -++.-|+..|..||.|..|.|+... -+|+. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57999999843 2566799999999999888875421 23333 333 45666
Q ss_pred cCHHHHHHHHHHhcCCcc
Q 014173 156 RSKEFAKKAIDELHSKEL 173 (429)
Q Consensus 156 ~~~~~a~~a~~~l~~~~~ 173 (429)
..-..-..|+..|.|..|
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666666677777777654
No 240
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=73.90 E-value=14 Score=30.35 Aligned_cols=6 Identities=50% Similarity=1.171 Sum_probs=2.8
Q ss_pred ccCCCC
Q 014173 424 VLNHWN 429 (429)
Q Consensus 424 ~~~~~~ 429 (429)
..|.||
T Consensus 72 ~~~qw~ 77 (217)
T smart00157 72 THNQWN 77 (217)
T ss_pred CCCccC
Confidence 444453
No 241
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=73.60 E-value=3.5 Score=41.35 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=3.6
Q ss_pred CCCCCHHHH
Q 014173 291 PDNTSTEKI 299 (429)
Q Consensus 291 p~~~te~~L 299 (429)
|..+|.++|
T Consensus 553 ~l~vTledl 561 (822)
T KOG2141|consen 553 PLSVTLEDL 561 (822)
T ss_pred cccccHHHh
Confidence 333444444
No 242
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.40 E-value=6.6 Score=26.81 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=46.6
Q ss_pred HHHHHhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCc
Q 014173 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (429)
Q Consensus 121 ~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (429)
++|++-|...| +|..|.-+..+.+..+...-||++....+...++ +=+.|.+..+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46778888888 7888887777766778888999988876644433 445677888888877644
No 243
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.94 E-value=9.7 Score=33.95 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=90.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCC-------CCCceeEEEEEecCHHHHHHHH----HHhcC--C
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE-------SGESKGFAFVSFRSKEFAKKAI----DELHS--K 171 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~a~----~~l~~--~ 171 (429)
.+|.|.+.|+..+++-..+...|-+||+|.+|.++.+.. .........+.|-+.+.|.... +.|.. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999999999999999999998751 1233457899999998876543 33321 2
Q ss_pred ccCCceEEEeecC--------------------------------CcccccccCCCCCC-CHHHHHHHH---HhhCC---
Q 014173 172 ELKGKTIRCSLSE--------------------------------TKNRLFIGNVPKNW-TEDEFRKVI---EDVGP--- 212 (429)
Q Consensus 172 ~~~g~~l~v~~~~--------------------------------~~~~l~v~nl~~~~-t~~~l~~~f---~~~G~--- 212 (429)
.|+...|.+.+.. ..+.|.|.-- ..+ +++-+.+.+ ..-+.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 3455555554422 0122222211 122 222222221 11121
Q ss_pred ceeEEEEeeCC-CCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 014173 213 GVETIELIKDP-QNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (429)
Q Consensus 213 ~v~~~~~~~d~-~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 253 (429)
.+..+.++... ....-+..||.++|-+-.-|...+..+...
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 24555555432 234456788999999988888888777543
No 244
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.62 E-value=23 Score=36.30 Aligned_cols=12 Identities=0% Similarity=0.063 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHh
Q 014173 157 SKEFAKKAIDEL 168 (429)
Q Consensus 157 ~~~~a~~a~~~l 168 (429)
+...+.+|++++
T Consensus 208 ~~~eiIrClka~ 219 (1102)
T KOG1924|consen 208 NLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 344455555543
No 245
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=68.55 E-value=6.2 Score=32.28 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=40.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHH
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDE 167 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~ 167 (429)
+++|.. |.+...++|..+-+ |.+..|.+.+.... ...+|..||.|.+.+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 456666 43444444554444 78889988776541 26789999999999999998865
No 246
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.27 E-value=13 Score=32.86 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=36.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEeecCCCCCceeEEEEEecCHH
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKE 159 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~ 159 (429)
..+-|+|.|||.++...+|+..+.+.+.+ .++.- .-+.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 44569999999999999999999887743 22222 224667999998753
No 247
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.11 E-value=4.8 Score=33.05 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=54.8
Q ss_pred CEEEEcCCCCCCC-----HHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc-eEEE
Q 014173 107 SEVFIGGLPKDAS-----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIRC 180 (429)
Q Consensus 107 ~~l~v~nLp~~~t-----~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v 180 (429)
+++.+.+++..+- ......+|.+|-+.....+++ +.+..-|.|.+++.|..|...+++..|.|+ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 5688888876532 223456777777665555544 345688999999999999999999999998 8887
Q ss_pred eecCCc
Q 014173 181 SLSETK 186 (429)
Q Consensus 181 ~~~~~~ 186 (429)
.++.+.
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 248
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.20 E-value=9.7 Score=25.88 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=45.9
Q ss_pred HHHHHhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 121 ~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.+|++-|+..| ++..|..+..+.++.+...-+|+......-.. -|+=+.|.|+++.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788888888 78888888888777777888898887644333 2455567788888877654
No 249
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=67.09 E-value=31 Score=25.97 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc--cCCceEEEeecCCccccc
Q 014173 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRCSLSETKNRLF 190 (429)
Q Consensus 113 nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~l~ 190 (429)
=||+-+. .|-++|..-|+|.+|..+..- .+ . .|+-.++|.. ++|+ |+|--......+.
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtqy-------------pd-n---dal~~~~G~lE~vDg~-i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQY-------------PD-N---DALLYVHGTLEQVDGN-IRIGSGQTPASVR 69 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEecc-------------CC-c---hhhheeeeehhhccCc-EEEccCCCcccEE
Confidence 3777765 588999999999888764321 11 1 1222334332 3343 4443333333333
Q ss_pred c---------cCCCCCCCHHHHHHHHHhhC--CceeEEEEeeCCCCCCCCccEEEEEecChH
Q 014173 191 I---------GNVPKNWTEDEFRKVIEDVG--PGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (429)
Q Consensus 191 v---------~nl~~~~t~~~l~~~f~~~G--~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~ 241 (429)
+ .-.|..+|-.+++++|+.-- ..|..-.+.+| -.+..+-..||..|....
T Consensus 70 i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 70 IQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNATQ 130 (145)
T ss_pred EecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEeccch
Confidence 3 33577889999999998631 01444444454 233445667898886653
No 250
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=66.75 E-value=6 Score=38.36 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHhCCceeCCeEEE
Q 014173 331 ERSSALKAVKDTEKYEIDGQVLE 353 (429)
Q Consensus 331 ~~~~A~~A~~~l~~~~~~g~~l~ 353 (429)
+-+.+.+|.+.+....|.|+.|+
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI~ 430 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKIV 430 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCccc
Confidence 44555555555544555555543
No 251
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=66.25 E-value=9.2 Score=37.98 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=9.1
Q ss_pred CCEEEEcCCCCCCCHH
Q 014173 106 GSEVFIGGLPKDASEE 121 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~ 121 (429)
...||-.-....+.-+
T Consensus 295 ~Y~vfTt~fDe~i~A~ 310 (600)
T TIGR01651 295 DYKVFTTAFDETVDAE 310 (600)
T ss_pred cceecchhhhhhccHh
Confidence 5667766665554433
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=65.14 E-value=14 Score=34.37 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=45.7
Q ss_pred EEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCcccccccCCCCCCCHHHHHHHHH
Q 014173 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208 (429)
Q Consensus 151 afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 208 (429)
|||.|.+..+|..|++.+.... ++.++|..+.+.+.++=.||........+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998655433 4677999999999999999988888777776543
No 253
>COG4907 Predicted membrane protein [Function unknown]
Probab=64.97 E-value=15 Score=34.90 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=6.7
Q ss_pred HHHHHHHHHhCC
Q 014173 333 SSALKAVKDTEK 344 (429)
Q Consensus 333 ~~A~~A~~~l~~ 344 (429)
+...+|++.++.
T Consensus 526 dkVvkam~~~~~ 537 (595)
T COG4907 526 DKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHhCc
Confidence 455666665553
No 254
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.93 E-value=18 Score=24.06 Aligned_cols=18 Identities=11% Similarity=0.466 Sum_probs=14.9
Q ss_pred HHHHHhhccCCCeEEEEE
Q 014173 121 EDLRDLCEPIGDVFEVRL 138 (429)
Q Consensus 121 ~~l~~~f~~~G~i~~v~~ 138 (429)
.+||++|+..|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999866554
No 255
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=62.62 E-value=7.1 Score=27.34 Aligned_cols=6 Identities=17% Similarity=0.341 Sum_probs=2.4
Q ss_pred cccccc
Q 014173 14 EEDNYM 19 (429)
Q Consensus 14 ~~~~~~ 19 (429)
+++.+.
T Consensus 44 DSd~EW 49 (77)
T PF12253_consen 44 DSDDEW 49 (77)
T ss_pred CCcccc
Confidence 344444
No 256
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.26 E-value=9.9 Score=29.19 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHH
Q 014173 108 EVFIGGLPKD---------ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160 (429)
Q Consensus 108 ~l~v~nLp~~---------~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~ 160 (429)
++.|-|+|.. ++-+.|++.|+.|.++. |+.+... .-+.|+++|.|.+--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 4566777553 35578999999998874 6666654 3578999999988643
No 257
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=61.60 E-value=23 Score=31.36 Aligned_cols=47 Identities=13% Similarity=0.317 Sum_probs=35.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCe-eEEEecCCCCCCCcEEEEEeCCHH
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERS 333 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~kg~afV~F~~~~ 333 (429)
.-|+++|||.++.-.+|+..+.+-+.+ .+|..- +.+|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCcc
Confidence 569999999999999999999887643 344432 22477999998643
No 258
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.12 E-value=6.2 Score=37.36 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=4.7
Q ss_pred cCCCCCCHHH
Q 014173 289 NIPDNTSTEK 298 (429)
Q Consensus 289 nlp~~~te~~ 298 (429)
-.|......+
T Consensus 388 ldpeifDD~D 397 (483)
T KOG2773|consen 388 LDPEIFDDSD 397 (483)
T ss_pred cCccccCcHH
Confidence 3454455554
No 259
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=57.72 E-value=9.3 Score=39.84 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=9.7
Q ss_pred CCCCCCHHHHHHHHhc
Q 014173 290 IPDNTSTEKIKELFQR 305 (429)
Q Consensus 290 lp~~~te~~L~~~F~~ 305 (429)
.|..+...+|+.+|+.
T Consensus 447 ~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 447 GPLEVPASELRKYFEP 462 (1024)
T ss_pred CccccchHhhhhhccC
Confidence 3555666666666653
No 260
>COG4907 Predicted membrane protein [Function unknown]
Probab=56.45 E-value=11 Score=35.92 Aligned_cols=13 Identities=31% Similarity=0.097 Sum_probs=6.7
Q ss_pred HHHHHHHHhCCce
Q 014173 334 SALKAVKDTEKYE 346 (429)
Q Consensus 334 ~A~~A~~~l~~~~ 346 (429)
.+.+++++|....
T Consensus 524 V~dkVvkam~~~~ 536 (595)
T COG4907 524 VSDKVVKAMRKAL 536 (595)
T ss_pred cHHHHHHHHHHhC
Confidence 4555555554433
No 261
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=55.99 E-value=10 Score=40.64 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.2
Q ss_pred HHHhcc
Q 014173 301 ELFQRH 306 (429)
Q Consensus 301 ~~F~~~ 306 (429)
.+|.-|
T Consensus 1544 ~VF~vY 1549 (1640)
T KOG0262|consen 1544 NVFKVY 1549 (1640)
T ss_pred Hhhhhe
Confidence 333333
No 262
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=55.77 E-value=48 Score=34.08 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=6.5
Q ss_pred CCHHHHHHhhccCC
Q 014173 118 ASEEDLRDLCEPIG 131 (429)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (429)
++..++-.+|...|
T Consensus 83 ls~~e~~~~F~~~~ 96 (1102)
T KOG1924|consen 83 LSSNEVLELFELMG 96 (1102)
T ss_pred ccHHHHHHHHHHHh
Confidence 34444445555444
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=54.77 E-value=17 Score=33.75 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=46.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccC-CeeEEEecCCCCC---C-CcEEEEEeCCHHHHHHHHHHhCCcee
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSG---K-RDFGFIHYAERSSALKAVKDTEKYEI 347 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~---~-kg~afV~F~~~~~A~~A~~~l~~~~~ 347 (429)
...|.|.+||+..+.++|.+...++- .+....+.+...+ . .+.|||.|....+...-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 36899999999999999988877754 2333344332211 1 57899999999886666666666644
No 264
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.61 E-value=46 Score=32.67 Aligned_cols=18 Identities=11% Similarity=-0.243 Sum_probs=8.6
Q ss_pred CCccccccccCccccccc
Q 014173 405 GFQQVHEYICKFIYFIFY 422 (429)
Q Consensus 405 ~~~~~~~~~~~~g~~~~~ 422 (429)
++.+..+.|++|-..|+|
T Consensus 614 ~~ppf~gqg~~f~~~p~~ 631 (648)
T KOG2295|consen 614 PQPPFSGQGGMFHRRPRY 631 (648)
T ss_pred CCCCcccCCCCcCCCccc
Confidence 344444445545555554
No 265
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=52.79 E-value=19 Score=29.53 Aligned_cols=67 Identities=10% Similarity=0.130 Sum_probs=42.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC--C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
+++|.. |.+..-++|.++-+ |.+..|.+.+..++ . +|-.||+|.+.++|.+.+.. +.....-..|..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r 181 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKR 181 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHH
Confidence 556665 33333344444444 78888888776655 3 89999999999999998764 433333334433
No 266
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=51.95 E-value=34 Score=33.91 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.0
Q ss_pred CEEEEcCCCCCC
Q 014173 107 SEVFIGGLPKDA 118 (429)
Q Consensus 107 ~~l~v~nLp~~~ 118 (429)
+.=.|+|||-.+
T Consensus 119 ~rntvgnipl~w 130 (733)
T KOG0650|consen 119 TRNTVGNIPLKW 130 (733)
T ss_pred hhcccCCccccc
Confidence 445678888654
No 267
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=51.87 E-value=25 Score=33.63 Aligned_cols=9 Identities=22% Similarity=0.733 Sum_probs=4.6
Q ss_pred cCCceEEEe
Q 014173 173 LKGKTIRCS 181 (429)
Q Consensus 173 ~~g~~l~v~ 181 (429)
+.||+|.|.
T Consensus 426 MrGRpItvA 434 (620)
T COG4547 426 MRGRPITVA 434 (620)
T ss_pred cCCcceehh
Confidence 455555543
No 268
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.82 E-value=15 Score=34.18 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=10.9
Q ss_pred EEcCCCCCCCHHHHHHhhcc
Q 014173 110 FIGGLPKDASEEDLRDLCEP 129 (429)
Q Consensus 110 ~v~nLp~~~t~~~l~~~f~~ 129 (429)
|---||..-+..+|...|-.
T Consensus 354 fAq~lp~i~~p~d~y~~F~~ 373 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVD 373 (514)
T ss_pred ccccCCccCCcchhhhhhee
Confidence 44555655566666554443
No 269
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.80 E-value=2.6 Score=39.43 Aligned_cols=78 Identities=6% Similarity=0.003 Sum_probs=61.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
.+.++..+|...++.++.-+|..||.|..+.+-+--++. +-.+||+-.+ ..|.-+|..+.-..+.|..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 356788899999999999999999999998877666554 5577887654 5677778777777788888998887654
Q ss_pred C
Q 014173 361 T 361 (429)
Q Consensus 361 ~ 361 (429)
-
T Consensus 83 ~ 83 (572)
T KOG4365|consen 83 S 83 (572)
T ss_pred h
Confidence 3
No 270
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=50.63 E-value=11 Score=37.50 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=7.5
Q ss_pred ccccccccccccCCc
Q 014173 10 RVDLEEDNYMEEMDD 24 (429)
Q Consensus 10 ~~~~~~~~~~~e~~~ 24 (429)
+++.+++++.+|++.
T Consensus 518 DYEVdSDeEWEEEep 532 (811)
T KOG4364|consen 518 DYEVDSDEEWEEEEP 532 (811)
T ss_pred cccccCcccccccCC
Confidence 344455555555444
No 271
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=50.22 E-value=5.3 Score=39.58 Aligned_cols=8 Identities=25% Similarity=0.626 Sum_probs=2.5
Q ss_pred CCCHHHHH
Q 014173 117 DASEEDLR 124 (429)
Q Consensus 117 ~~t~~~l~ 124 (429)
++|.+++.
T Consensus 189 DVTaeEF~ 196 (556)
T PF05918_consen 189 DVTAEEFE 196 (556)
T ss_dssp T--HHHHH
T ss_pred hccHHHHH
Confidence 34444443
No 272
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=50.00 E-value=21 Score=33.21 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 173 (429)
-..|.|++||+..++.+|.+-+..|-. +....+.....+ ..-.+.|||.|..+++........+|.++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 356999999999999999887777652 333333221110 12255799999999998877777777553
No 273
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.87 E-value=3.4 Score=38.69 Aligned_cols=77 Identities=6% Similarity=-0.128 Sum_probs=60.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+..|+..||...++.++.-+|..||.|..+.+.+..+.+...-.+||...+ ..|..|+..+.-..++|..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346788999999999999999999999888887776667777778887654 45666776666667777777777654
No 274
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=49.52 E-value=7.8 Score=36.04 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCCCHH--------HHHHhhcc--CCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 014173 105 NGSEVFIGGLPKDASEE--------DLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~--------~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 165 (429)
..+.+|+.+++...+.. ++...|.. .+++..|+..++.....++|..|++|+....|++++
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34678888887765444 89999988 678889998888766789999999999999999887
No 275
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=49.50 E-value=43 Score=31.34 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhccC----CCeEEEEEeecC
Q 014173 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDK 142 (429)
Q Consensus 104 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~i~~v~~~~~~ 142 (429)
..+.+|-|-||.|+ +...+|...|+.| |+|..|.|++..
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 45678999999995 7788898888765 588888887653
No 276
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=49.02 E-value=12 Score=39.38 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=6.7
Q ss_pred CEEEEcCCCCC
Q 014173 107 SEVFIGGLPKD 117 (429)
Q Consensus 107 ~~l~v~nLp~~ 117 (429)
..+||-.+|..
T Consensus 905 ~~~wvl~~Pi~ 915 (1096)
T TIGR00927 905 QAIYLFLLPIV 915 (1096)
T ss_pred eeEeEEecchh
Confidence 45677666654
No 277
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=48.73 E-value=23 Score=34.40 Aligned_cols=6 Identities=50% Similarity=0.611 Sum_probs=2.5
Q ss_pred HHHHHH
Q 014173 160 FAKKAI 165 (429)
Q Consensus 160 ~a~~a~ 165 (429)
-|.++|
T Consensus 322 rAR~~i 327 (432)
T PF09073_consen 322 RARRAI 327 (432)
T ss_pred HHHHHH
Confidence 344444
No 278
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=47.69 E-value=20 Score=38.65 Aligned_cols=12 Identities=33% Similarity=0.518 Sum_probs=5.1
Q ss_pred CCCCCCCHHHHH
Q 014173 113 GLPKDASEEDLR 124 (429)
Q Consensus 113 nLp~~~t~~~l~ 124 (429)
.||.....-+|-
T Consensus 1448 ~lp~~~~k~~ms 1459 (1640)
T KOG0262|consen 1448 KLPLDKEKLDMS 1459 (1640)
T ss_pred EecCCCcchHHH
Confidence 445443333333
No 279
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=45.76 E-value=13 Score=30.01 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=60.9
Q ss_pred CCCHHHHHHhhcc-CCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCcc--------
Q 014173 117 DASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN-------- 187 (429)
Q Consensus 117 ~~t~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~-------- 187 (429)
..+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.+++. .....+.+..+.+..-.+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 3556666655543 232223333222 24689999999999999995 35556677777666544321
Q ss_pred ----cccccCCCCC-CCHHHHHHHHHhhCCceeEE
Q 014173 188 ----RLFIGNVPKN-WTEDEFRKVIEDVGPGVETI 217 (429)
Q Consensus 188 ----~l~v~nl~~~-~t~~~l~~~f~~~G~~v~~~ 217 (429)
=+.|.+||.. ++++-++.+.+.+|. +..+
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~v 135 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEV 135 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEE
Confidence 1556789987 788889999999997 4433
No 280
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=45.37 E-value=16 Score=31.46 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEE
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~ 137 (429)
+......+||+-|+|..+|++.|..+.+++|.+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4445667899999999999999999999999654443
No 281
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=45.13 E-value=74 Score=25.44 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=40.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
.-|+--+....+..+|+..++. |+ .|..|..+....+. --|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 4666667788999999999987 66 66777655444332 2499999877776655443
No 282
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.32 E-value=26 Score=35.00 Aligned_cols=7 Identities=0% Similarity=0.506 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 014173 298 KIKELFQ 304 (429)
Q Consensus 298 ~L~~~F~ 304 (429)
.|+.+..
T Consensus 544 hLr~vi~ 550 (600)
T TIGR01651 544 HLRAVIE 550 (600)
T ss_pred HHHHHHH
Confidence 3444433
No 283
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.96 E-value=57 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.562 Sum_probs=15.8
Q ss_pred HHHHHHHhccCCeeEEEec
Q 014173 297 EKIKELFQRHGEVTKVVMP 315 (429)
Q Consensus 297 ~~L~~~F~~~G~i~~v~i~ 315 (429)
.+||++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998766654
No 284
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.55 E-value=1.5e+02 Score=27.90 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCe-eEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
...|-|.++|...-.++|..+|..|+.- -+|..+.+. .||--|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 4689999999888888888999998742 455555554 799999999999999974
No 285
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.63 E-value=95 Score=21.17 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHHHHhccC-CeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 297 EKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 297 ~~L~~~F~~~G-~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
++|++-|...| .|..|.-+..+.++ -...||+.+...+... .++=..+++..|+|......
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46778888877 67777655555333 4567888876555333 34555788999998766543
No 286
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=40.32 E-value=17 Score=38.27 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=6.3
Q ss_pred eeEEEEEecCHHH
Q 014173 148 KGFAFVSFRSKEF 160 (429)
Q Consensus 148 ~g~afV~f~~~~~ 160 (429)
+.+-.+.|--.--
T Consensus 931 ~k~y~ltFi~SIi 943 (1096)
T TIGR00927 931 RKFFVITFLGSIM 943 (1096)
T ss_pred cceeeehHHHHHH
Confidence 3455566654433
No 287
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=39.09 E-value=20 Score=32.40 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=4.5
Q ss_pred CEEEEcC
Q 014173 107 SEVFIGG 113 (429)
Q Consensus 107 ~~l~v~n 113 (429)
..+|..+
T Consensus 85 ~~~F~~~ 91 (285)
T PF03896_consen 85 TILFPKP 91 (285)
T ss_pred EEEeccc
Confidence 4566666
No 288
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.64 E-value=9.8 Score=37.76 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=24.0
Q ss_pred HHHHhhccCCCeEEEEEeecCC-CCCceeE-EEEEecCHHHHHHHH
Q 014173 122 DLRDLCEPIGDVFEVRLMKDKE-SGESKGF-AFVSFRSKEFAKKAI 165 (429)
Q Consensus 122 ~l~~~f~~~G~i~~v~~~~~~~-~~~~~g~-afV~f~~~~~a~~a~ 165 (429)
..++-|++|--+.+.+-+.... ...+.-| -++.|.+-..+++-+
T Consensus 466 ~ArerfqkYRGLksl~Ts~Wd~~En~P~dy~rlfqF~Nyrntkk~i 511 (754)
T KOG1980|consen 466 SARERFQKYRGLKSLRTSPWDAKENLPADYARLFQFQNYRNTKKRI 511 (754)
T ss_pred HHHHHHHHhccccccccCCCcccccCcHHHHHHHhhhhhhhHHHHh
Confidence 4567788887777766544321 1122222 245666666666544
No 289
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.58 E-value=1.1e+02 Score=21.89 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=41.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 014173 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (429)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 167 (429)
-|.=-.+..++..+|+..++. || .|..|+....+. ...-|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 455567789999999998877 66 777777766542 334599999998888876543
No 290
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.48 E-value=1.6e+02 Score=21.40 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 014173 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 296 e~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~ 343 (429)
.+.++++++++| +++++.+..+... ....+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD--FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC--EEEEEEcCCHHHHHHHHHHHH
Confidence 356788888876 7888888877654 678889999998887776554
No 291
>PHA03169 hypothetical protein; Provisional
Probab=36.88 E-value=1.3e+02 Score=28.03 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.1
Q ss_pred HHHHHHhh
Q 014173 203 FRKVIEDV 210 (429)
Q Consensus 203 l~~~f~~~ 210 (429)
.+.+|.++
T Consensus 303 r~~Ffr~~ 310 (413)
T PHA03169 303 RRRFFRQV 310 (413)
T ss_pred HHHHHHHh
Confidence 34555554
No 292
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.19 E-value=26 Score=30.95 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.2
Q ss_pred CCCCCHHHHHH
Q 014173 195 PKNWTEDEFRK 205 (429)
Q Consensus 195 ~~~~t~~~l~~ 205 (429)
...+|.++|..
T Consensus 182 ~~~lTQeElL~ 192 (240)
T PF05764_consen 182 ERPLTQEELLE 192 (240)
T ss_pred CCCCCHHHHHH
Confidence 34455555443
No 293
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=36.15 E-value=1.1e+02 Score=19.27 Aligned_cols=42 Identities=10% Similarity=0.308 Sum_probs=28.9
Q ss_pred HHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHH
Q 014173 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (429)
Q Consensus 297 ~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~ 339 (429)
..+..+|.+.| .|..+.+.... +.++...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 45667777776 77777765543 33567788888888877765
No 294
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.52 E-value=40 Score=31.21 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 325 afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
|||+|.+..+|..|++.+.... .+.++|..|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999999655433 45567777765543
No 295
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.76 E-value=32 Score=29.71 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=28.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV 313 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~ 313 (429)
....+||+-|||..+|++-|..+.+++|.+..+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4557999999999999999999999998555443
No 296
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.64 E-value=1.3e+02 Score=20.59 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=35.7
Q ss_pred eEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC-CcccccccCCCCCCCHHHHHHHHHhhCC
Q 014173 149 GFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE-TKNRLFIGNVPKNWTEDEFRKVIEDVGP 212 (429)
Q Consensus 149 g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~-~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 212 (429)
.+.+|.|.|...|.+|-+.|...-+..+-+-+-..- ..+.+.+.-- ....+.+..+++..+-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~--~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALRFE--PEDLEKIKEILEENGI 64 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEEEC--hhhHHHHHHHHHHCCC
Confidence 368999999999999998888765543333211110 1122222111 1355667777777663
No 297
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=34.44 E-value=69 Score=32.82 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 331 ~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
..+++..+++.+.+ .-.-++|.+...+|..-
T Consensus 694 kl~~~l~~vek~~~-~~~~kPLal~~hKPv~i 724 (823)
T KOG2147|consen 694 KLEDTLALVEKLTG-FAERKPLALQKHKPVAI 724 (823)
T ss_pred HHHHHHHHHHHHhh-hhhcccchhhccCCccc
Confidence 34566666666555 12345666655555443
No 298
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=34.15 E-value=28 Score=33.89 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=14.0
Q ss_pred EEEEcCCCCCCCHHHHHHhh
Q 014173 108 EVFIGGLPKDASEEDLRDLC 127 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f 127 (429)
.-.|+.||--++.++-..++
T Consensus 800 k~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 800 KNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHhcCCcccchHHHHHHh
Confidence 35678888887777766554
No 299
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.98 E-value=77 Score=32.85 Aligned_cols=8 Identities=13% Similarity=0.114 Sum_probs=3.6
Q ss_pred EEEEecCH
Q 014173 151 AFVSFRSK 158 (429)
Q Consensus 151 afV~f~~~ 158 (429)
.+|.+++.
T Consensus 772 ~~i~~~~~ 779 (968)
T KOG1060|consen 772 THIEEKSI 779 (968)
T ss_pred ccCcchhH
Confidence 34444443
No 300
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.78 E-value=59 Score=22.38 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014173 323 DFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (429)
Q Consensus 323 g~afV~F~~~~~A~~A~~~l~~~~~~g~ 350 (429)
.+.+|.|.+..+|.+|-+.|+...+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4689999999999999998886655433
No 301
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=33.51 E-value=30 Score=31.31 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=6.2
Q ss_pred eEEEccCCCCCCHHH
Q 014173 284 ALYVKNIPDNTSTEK 298 (429)
Q Consensus 284 ~l~v~nlp~~~te~~ 298 (429)
+|-|--.+..++.+.
T Consensus 193 TV~IvE~~~~~D~e~ 207 (285)
T PF03896_consen 193 TVTIVEPESGFDPET 207 (285)
T ss_pred eEEEeecCCCcChhh
Confidence 444444443344433
No 302
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=33.36 E-value=33 Score=33.32 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=10.9
Q ss_pred EEEEEecCHHHHHHHHHHh
Q 014173 150 FAFVSFRSKEFAKKAIDEL 168 (429)
Q Consensus 150 ~afV~f~~~~~a~~a~~~l 168 (429)
+-.=.|...+.|-+..+.|
T Consensus 211 W~HDrF~e~eQaPKSr~eL 229 (694)
T KOG4264|consen 211 WKHDRFDEKEQAPKSRKEL 229 (694)
T ss_pred cccccchhhhcCchHHHHH
Confidence 4445677777666555443
No 303
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=33.12 E-value=1.6e+02 Score=20.16 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHHHHHHHhccC-CeeEEEecCCCCCC-CcEEEEEeC-CHHHHHHHHHHhCC
Q 014173 296 TEKIKELFQRHG-EVTKVVMPPGKSGK-RDFGFIHYA-ERSSALKAVKDTEK 344 (429)
Q Consensus 296 e~~L~~~F~~~G-~i~~v~i~~~~~~~-kg~afV~F~-~~~~A~~A~~~l~~ 344 (429)
-.++...|+.+| .+.+|.-.+.+... .-+-||+|. ......+|+..|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456778888887 67777766655443 335678877 44455667776654
No 304
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=32.79 E-value=1.5e+02 Score=19.61 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=32.0
Q ss_pred CHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 014173 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (429)
Q Consensus 295 te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~ 346 (429)
.-.+|-.+|.+.| .|.++.+..... +++.-+.+.+.+.|.+++.. +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3456778888877 677887655433 35666667777677777764 4443
No 305
>PF15063 TC1: Thyroid cancer protein 1
Probab=31.91 E-value=20 Score=24.68 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=34.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCee---EEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVT---KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~---~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
++--+.||-.+++...|..+|..-|..+ +++|+- -...++++..+|+..|
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~----------~~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIW----------ECAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHH----------hhCCCHHHHHHHHHhc
Confidence 4556789999999999999999998643 333322 1223566666666655
No 306
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.26 E-value=1.9e+02 Score=20.18 Aligned_cols=61 Identities=7% Similarity=0.117 Sum_probs=38.9
Q ss_pred EEEccCCCCCCHHHHHHHHhc-------cCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce
Q 014173 285 LYVKNIPDNTSTEKIKELFQR-------HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (429)
Q Consensus 285 l~v~nlp~~~te~~L~~~F~~-------~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~ 346 (429)
|...+||..+|.++|.....+ +..|..++..-.....+-||+..=.+.+...++.+. .|..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCC
Confidence 556889988999998776653 445555544333333346676666777777777665 3543
No 307
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.99 E-value=81 Score=31.00 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=38.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCCCCC
Q 014173 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366 (429)
Q Consensus 322 kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~ 366 (429)
..++++.|.+...+.+|+..++|..+.+..+++..+.........
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~~~ 107 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSLRR 107 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccccccc
Confidence 479999999999999999999999999999988887766554443
No 308
>PHA03169 hypothetical protein; Provisional
Probab=29.26 E-value=1.6e+02 Score=27.42 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=5.8
Q ss_pred EEEeCCHHHHHHHH
Q 014173 326 FIHYAERSSALKAV 339 (429)
Q Consensus 326 fV~F~~~~~A~~A~ 339 (429)
+|.+.+..-|++++
T Consensus 370 tVyCqsk~TaK~V~ 383 (413)
T PHA03169 370 TVFCQSRGTAKAVI 383 (413)
T ss_pred EEEecCcccHHHHH
Confidence 34444444444443
No 309
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.92 E-value=2.1e+02 Score=19.82 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 014173 297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 297 ~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~ 343 (429)
..|.+.+..+| +....+.-...| ++.|+-+.+...+.++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G--~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGG--PTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSS--SEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCC--CeEEEEECCHHHHHHHHHHHH
Confidence 45777778888 555555443223 788999989999988888764
No 310
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=27.54 E-value=3e+02 Score=23.26 Aligned_cols=6 Identities=33% Similarity=0.263 Sum_probs=2.2
Q ss_pred HHHHHH
Q 014173 335 ALKAVK 340 (429)
Q Consensus 335 A~~A~~ 340 (429)
|..||.
T Consensus 13 aalais 18 (311)
T PF12782_consen 13 AALAIS 18 (311)
T ss_pred HHHHHH
Confidence 333333
No 311
>PHA02664 hypothetical protein; Provisional
Probab=27.48 E-value=33 Score=30.94 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred ccccccCCccccccccCCCcccCCCCCCCCCcccccccccccccccccchhhccCCCCCCCCcccccCCCC
Q 014173 16 DNYMEEMDDDVEEQVEEDPEEEGGDGNFEENDDDEEYDHSKAGASEKDQSAEANRNDDDTPHVEEEEKPTA 86 (429)
Q Consensus 16 ~~~~~e~~~~~~~~~~~~~~ee~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (429)
+++++++++.+.-++..+-|++.+.+..-.--..+++.++.++....+.+.-.+.++......-+++..+.
T Consensus 451 dsd~d~~de~esgde~~~geddsdss~sys~~ss~de~ds~ddswgd~sdsgie~ddggvgq~ieee~~ee 521 (534)
T PHA02664 451 DSDEDDMDEQESGDERADGEDDSDSSYSYSTTSSEDESDSADDSWGDESDSGIEHDDGGVGQAIEEEEEEE 521 (534)
T ss_pred cccccccchhhccccccCCccccccccccccccccccccccccccccccccCccccCCchhhhhhHHHHHH
No 312
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=27.37 E-value=58 Score=31.70 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=3.8
Q ss_pred EEEEEeCC
Q 014173 324 FGFIHYAE 331 (429)
Q Consensus 324 ~afV~F~~ 331 (429)
-|.+.+.+
T Consensus 443 ~ap~~~s~ 450 (694)
T KOG4264|consen 443 RAPSHQSD 450 (694)
T ss_pred cccccccc
Confidence 35555543
No 313
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=27.36 E-value=41 Score=32.86 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=4.2
Q ss_pred CCCcccccc
Q 014173 44 EENDDDEEY 52 (429)
Q Consensus 44 ~~~dd~~~~ 52 (429)
+||||++|+
T Consensus 307 dDDDDssDW 315 (507)
T PF11702_consen 307 DDDDDSSDW 315 (507)
T ss_pred cCCccchhh
Confidence 344444455
No 314
>PRK11901 hypothetical protein; Reviewed
Probab=26.80 E-value=2e+02 Score=26.47 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=43.1
Q ss_pred cCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEE--EecCHHHHHHHHHHhcCC
Q 014173 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV--SFRSKEFAKKAIDELHSK 171 (429)
Q Consensus 100 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV--~f~~~~~a~~a~~~l~~~ 171 (429)
...+....+|-|-.+ ..++.|..|..+++ +..++++.....|+. .|..| .|.+.++|+.|+..|...
T Consensus 239 ~s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 239 SSAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred hcCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 344455556666664 45777888888776 344566554433433 24333 699999999999887653
No 315
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=26.01 E-value=2.8e+02 Score=24.52 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=8.8
Q ss_pred cceEEEccCCCCCCH
Q 014173 282 VKALYVKNIPDNTST 296 (429)
Q Consensus 282 ~~~l~v~nlp~~~te 296 (429)
.+.|.+++-|..+-+
T Consensus 168 drv~l~~g~~k~v~~ 182 (390)
T KOG2192|consen 168 DRVVLIGGKPKRVVE 182 (390)
T ss_pred ceEEEecCCcchHHH
Confidence 356666666665543
No 316
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=25.83 E-value=58 Score=31.73 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=14.7
Q ss_pred eeEEEEEecCHHHHHHHHHHhcC
Q 014173 148 KGFAFVSFRSKEFAKKAIDELHS 170 (429)
Q Consensus 148 ~g~afV~f~~~~~a~~a~~~l~~ 170 (429)
-|+-+++|..-+.-..-+....|
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKG 266 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKG 266 (641)
T ss_pred CCceeeeeeccchhhhhhhccCC
Confidence 35777888877776666644333
No 317
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.40 E-value=2.1e+02 Score=19.00 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=29.0
Q ss_pred CHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeC--CHHHHHHHHHHhCCce
Q 014173 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYA--ERSSALKAVKDTEKYE 346 (429)
Q Consensus 295 te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~--~~~~A~~A~~~l~~~~ 346 (429)
.-..|-.+|..+| .|.++.............+|.+. +.+.+.+++.. +|..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~ 67 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYE 67 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCe
Confidence 3456778888887 67777654433222334455554 45556666654 4443
No 318
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=24.34 E-value=3.5e+02 Score=21.16 Aligned_cols=69 Identities=7% Similarity=0.111 Sum_probs=46.9
Q ss_pred eEEEccCCCC---CCHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 284 ALYVKNIPDN---TSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 284 ~l~v~nlp~~---~te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
.|.|+..... .+-..|.+++..-| .++++....+ ...|.|.+.++-.+|...|....=++-.|.+.++.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 4555544222 45677888888876 5566666443 48999999999999988887655455566666655
No 319
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=24.28 E-value=1.7e+02 Score=19.60 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 014173 397 GTGFGVAAG 405 (429)
Q Consensus 397 g~g~g~~~~ 405 (429)
+++||+.-+
T Consensus 50 ~~~YG~nkG 58 (71)
T PF04202_consen 50 PRRYGGNKG 58 (71)
T ss_pred CcccCcccc
Confidence 333443333
No 320
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.87 E-value=2.1e+02 Score=18.42 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=27.4
Q ss_pred HHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 014173 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (429)
Q Consensus 297 ~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~ 345 (429)
..|-.+|.++| .|..+..............+...+.+.+.++++. +|.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 45667777776 6666655443322123455566676666666664 444
No 321
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=2.4e+02 Score=26.67 Aligned_cols=80 Identities=18% Similarity=0.336 Sum_probs=57.7
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhcc----CCeeEEEecCCCC-----------------------------------
Q 014173 280 SQVKALYVKNIPD-NTSTEKIKELFQRH----GEVTKVVMPPGKS----------------------------------- 319 (429)
Q Consensus 280 ~~~~~l~v~nlp~-~~te~~L~~~F~~~----G~i~~v~i~~~~~----------------------------------- 319 (429)
..+++|-|-||.+ .+...+|..+|+.| |.|..|.|.+..-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 4567899999995 46778898888864 4677777742210
Q ss_pred -------------CCCc-------------------EEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEeccC
Q 014173 320 -------------GKRD-------------------FGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLAKP 359 (429)
Q Consensus 320 -------------~~kg-------------------~afV~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~ 359 (429)
+-+| ||.|+|.+...+......+.|..+. +..+-++|...
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 0012 7899999999999999999998775 45666666543
No 322
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=23.30 E-value=31 Score=29.71 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=3.2
Q ss_pred HHhCCceeCCeEEEE
Q 014173 340 KDTEKYEIDGQVLEV 354 (429)
Q Consensus 340 ~~l~~~~~~g~~l~v 354 (429)
..+|++.++=++...
T Consensus 113 ~~fnnY~~Dp~rp~~ 127 (214)
T PF04959_consen 113 EYFNNYLLDPKRPQP 127 (214)
T ss_dssp HHHHHH---------
T ss_pred HHHHHHhcCcccCCC
Confidence 345665555444433
No 323
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=22.72 E-value=73 Score=31.25 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=8.0
Q ss_pred ccCCCCCCHHHHHHHHh
Q 014173 288 KNIPDNTSTEKIKELFQ 304 (429)
Q Consensus 288 ~nlp~~~te~~L~~~F~ 304 (429)
-|++..+++.-||.++.
T Consensus 479 p~~~~~v~e~~vR~~l~ 495 (555)
T KOG2393|consen 479 PGSDIKVNEEAVRRYLE 495 (555)
T ss_pred CCcccchhHHHHHHHHh
Confidence 33344455555554444
No 324
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.09 E-value=42 Score=31.52 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=44.4
Q ss_pred ceEEEccCCCCCCH--------HHHHHHHhc--cCCeeEEEecCCC-CCC-CcEEEEEeCCHHHHHHHHH
Q 014173 283 KALYVKNIPDNTST--------EKIKELFQR--HGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVK 340 (429)
Q Consensus 283 ~~l~v~nlp~~~te--------~~L~~~F~~--~G~i~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~ 340 (429)
+.+|+.+.+..... +++...|.+ ++.+..|...++. +.. +|..|++|.....|.+...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56777777654444 489999999 6677788877776 333 8899999999999999884
No 325
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=21.48 E-value=2.4e+02 Score=18.19 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=38.3
Q ss_pred eEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCH----HHHHHHHHH
Q 014173 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER----SSALKAVKD 341 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~----~~A~~A~~~ 341 (429)
+|.|.||.-.--...|+..+...-.|..+.+.... +.+-|.|... +....+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC----CEEEEEEecCCCCHHHHHHHHHH
Confidence 45666766555667888888888889988887666 5688888744 445555544
No 326
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.12 E-value=2e+02 Score=20.41 Aligned_cols=35 Identities=9% Similarity=0.291 Sum_probs=23.9
Q ss_pred CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc
Q 014173 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (429)
Q Consensus 308 ~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~ 345 (429)
.|.+|..+.+ -+||-||+=.+..++..|+..+.+.
T Consensus 33 ~I~Si~~~~~---lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDS---LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TT---STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCC---CceEEEEEeCCHHHHHHHHhcccce
Confidence 4566665544 2599999999999999999877654
No 327
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.11 E-value=2.1e+02 Score=20.46 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred CeEEEEEeecCCCCCceeEEEEEecC
Q 014173 132 DVFEVRLMKDKESGESKGFAFVSFRS 157 (429)
Q Consensus 132 ~i~~v~~~~~~~~~~~~g~afV~f~~ 157 (429)
.|.+|++..-...++-+++|=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888776669999999999974
No 328
>PF14893 PNMA: PNMA
Probab=20.71 E-value=92 Score=28.96 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=42.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhc----cCCeeEE-EecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQR----HGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~----~G~i~~v-~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
..+.|.|.+||.+|++.+|.+.+.. .|...=+ ++++...+ ...|+|+|...-+-...=..+.| .|..-+|-
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e~~n~~~iP~~i~g---~gg~W~Vv 92 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAEDVNYSLIPREIPG---KGGPWRVV 92 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeecccccchhhCchhcCC---CCCceEEE
Confidence 3478999999999999998877654 4432211 11111111 24688888754332222222222 35566665
Q ss_pred eccCCC
Q 014173 356 LAKPQT 361 (429)
Q Consensus 356 ~a~~~~ 361 (429)
|..+..
T Consensus 93 ~~p~~~ 98 (331)
T PF14893_consen 93 FKPPAP 98 (331)
T ss_pred ecCCCC
Confidence 555443
Done!