Query 014173
Match_columns 429
No_of_seqs 362 out of 3185
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 2.4E-45 8.2E-50 335.9 27.6 252 99-360 34-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 4.4E-45 1.5E-49 332.8 26.3 247 103-363 19-267 (284)
3 4f02_A Polyadenylate-binding p 100.0 9.1E-37 3.1E-41 265.1 16.7 170 105-362 14-183 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 1.4E-33 4.7E-38 242.4 20.2 177 102-364 9-187 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 3.1E-33 1.1E-37 234.0 19.4 163 105-357 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 1.5E-32 5.1E-37 239.8 23.2 180 105-363 27-208 (216)
7 1fxl_A Paraneoplastic encephal 100.0 1E-32 3.4E-37 230.7 21.1 162 106-357 2-167 (167)
8 3md3_A Nuclear and cytoplasmic 100.0 7.5E-33 2.6E-37 231.2 19.7 164 107-359 1-166 (166)
9 2cjk_A Nuclear polyadenylated 100.0 4.6E-33 1.6E-37 232.7 14.9 163 105-360 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 4.5E-32 1.5E-36 228.6 19.9 165 105-358 2-175 (175)
11 3tyt_A Heterogeneous nuclear r 100.0 1E-30 3.5E-35 224.1 21.5 195 105-357 3-204 (205)
12 3pgw_A U1-A; protein-RNA compl 100.0 2.4E-30 8E-35 235.2 24.2 248 103-358 6-281 (282)
13 1fje_B Nucleolin RBD12, protei 100.0 1.2E-31 4.2E-36 225.8 12.4 166 102-360 9-174 (175)
14 2yh0_A Splicing factor U2AF 65 100.0 1.3E-30 4.5E-35 224.2 18.7 181 105-362 3-196 (198)
15 2g4b_A Splicing factor U2AF 65 100.0 8.8E-31 3E-35 220.0 17.2 157 105-358 3-172 (172)
16 2adc_A Polypyrimidine tract-bi 100.0 9.6E-30 3.3E-34 223.3 21.4 195 103-360 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 7.2E-30 2.5E-34 219.4 17.1 193 105-360 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 2E-29 6.8E-34 225.8 17.3 159 103-363 19-182 (261)
19 3smz_A Protein raver-1, ribonu 99.9 2E-26 6.9E-31 209.4 19.0 165 103-272 92-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 5.3E-26 1.8E-30 207.5 15.0 162 104-270 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 8.3E-22 2.8E-26 162.3 17.7 135 228-362 11-152 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.8E-22 6.1E-27 156.4 10.5 97 104-202 3-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 9.2E-22 3.1E-26 147.6 11.3 82 104-185 17-98 (99)
24 2i2y_A Fusion protein consists 99.9 1.5E-21 5.1E-26 159.1 13.0 139 145-361 10-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-20 5.7E-25 140.6 10.5 80 280-359 17-98 (99)
26 3s8s_A Histone-lysine N-methyl 99.8 3.6E-20 1.2E-24 141.6 11.8 84 103-186 3-86 (110)
27 2lxi_A RNA-binding protein 10; 99.8 8.9E-21 3.1E-25 139.9 5.2 83 106-188 1-85 (91)
28 2lkz_A RNA-binding protein 5; 99.8 2.2E-20 7.4E-25 138.2 7.0 80 106-185 9-94 (95)
29 3pgw_S U1-70K; protein-RNA com 99.8 2.8E-20 9.4E-25 176.9 9.1 83 280-362 100-184 (437)
30 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.1E-19 3.8E-24 149.0 11.4 83 280-362 37-121 (156)
31 2lxi_A RNA-binding protein 10; 99.8 5.1E-20 1.8E-24 135.8 8.2 81 282-362 1-85 (91)
32 3q2s_C Cleavage and polyadenyl 99.8 8.2E-21 2.8E-25 165.1 3.7 80 281-360 67-150 (229)
33 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.3E-19 2.1E-23 133.8 13.7 85 280-364 13-97 (103)
34 3md1_A Nuclear and cytoplasmic 99.8 3.1E-19 1.1E-23 129.8 11.3 81 106-186 1-81 (83)
35 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-19 3.9E-24 140.9 9.4 105 103-212 5-109 (115)
36 2dnz_A Probable RNA-binding pr 99.8 3.7E-19 1.3E-23 132.9 11.6 85 103-187 2-86 (95)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-19 7.6E-24 131.2 10.2 82 103-184 4-85 (85)
38 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.7E-19 9.1E-24 131.4 10.6 83 104-186 4-86 (87)
39 4f25_A Polyadenylate-binding p 99.8 1.4E-19 4.8E-24 140.0 9.5 82 282-363 5-86 (115)
40 3s8s_A Histone-lysine N-methyl 99.8 5E-20 1.7E-24 140.8 6.3 83 280-362 4-88 (110)
41 2jrs_A RNA-binding protein 39; 99.8 4.1E-19 1.4E-23 135.5 11.1 86 102-187 22-107 (108)
42 2cq3_A RNA-binding protein 9; 99.8 1.3E-18 4.6E-23 131.9 13.8 84 280-363 13-96 (103)
43 2cq0_A Eukaryotic translation 99.8 4.7E-19 1.6E-23 134.5 11.2 85 103-187 12-96 (103)
44 2x1f_A MRNA 3'-END-processing 99.8 2.2E-19 7.5E-24 134.3 9.0 85 105-189 1-85 (96)
45 1whw_A Hypothetical protein ri 99.8 4.7E-19 1.6E-23 133.4 10.8 86 103-188 5-90 (99)
46 2dgx_A KIAA0430 protein; RRM d 99.8 7.3E-19 2.5E-23 131.3 11.7 82 280-362 7-92 (96)
47 2cqc_A Arginine/serine-rich sp 99.8 4.7E-19 1.6E-23 132.4 10.5 84 102-185 11-94 (95)
48 3p5t_L Cleavage and polyadenyl 99.8 1.2E-19 4.2E-24 133.8 7.1 80 107-186 2-83 (90)
49 2dgs_A DAZ-associated protein 99.8 8.1E-19 2.8E-23 132.1 11.7 85 102-187 6-90 (99)
50 2dgo_A Cytotoxic granule-assoc 99.8 2E-18 6.7E-23 133.9 14.1 85 280-364 13-99 (115)
51 2cqd_A RNA-binding region cont 99.8 2.5E-18 8.6E-23 133.4 14.7 82 280-362 15-98 (116)
52 2lkz_A RNA-binding protein 5; 99.8 2.4E-19 8.2E-24 132.6 8.4 79 281-359 8-94 (95)
53 2do4_A Squamous cell carcinoma 99.8 1E-18 3.5E-23 131.8 12.0 84 103-187 14-97 (100)
54 2la6_A RNA-binding protein FUS 99.8 8.2E-19 2.8E-23 132.0 11.4 85 100-184 7-99 (99)
55 2e5h_A Zinc finger CCHC-type a 99.8 4.9E-19 1.7E-23 132.0 10.1 82 103-184 13-94 (94)
56 1whw_A Hypothetical protein ri 99.8 1.7E-18 5.9E-23 130.3 13.2 84 280-363 6-91 (99)
57 2dnz_A Probable RNA-binding pr 99.8 1.3E-18 4.3E-23 130.0 12.0 83 280-362 3-87 (95)
58 1x5u_A Splicing factor 3B subu 99.8 7.1E-19 2.4E-23 134.0 10.7 86 102-187 11-96 (105)
59 1sjq_A Polypyrimidine tract-bi 99.8 5.1E-19 1.7E-23 131.9 9.6 81 280-364 14-96 (105)
60 2lea_A Serine/arginine-rich sp 99.8 2.7E-19 9.3E-24 142.3 8.7 123 232-363 6-130 (135)
61 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.2E-19 2.1E-23 145.8 11.0 85 102-186 68-152 (165)
62 2dnm_A SRP46 splicing factor; 99.8 5.2E-19 1.8E-23 134.2 9.6 85 103-187 10-94 (103)
63 2do4_A Squamous cell carcinoma 99.8 1.4E-18 4.9E-23 131.0 12.0 83 280-362 15-98 (100)
64 3r27_A HnRNP L, heterogeneous 99.8 9.6E-19 3.3E-23 129.0 10.5 78 280-361 19-98 (100)
65 2dgo_A Cytotoxic granule-assoc 99.8 1.2E-18 4E-23 135.2 11.6 85 103-187 12-96 (115)
66 1p27_B RNA-binding protein 8A; 99.8 9.6E-19 3.3E-23 133.5 10.9 83 104-186 21-103 (106)
67 2fy1_A RNA-binding motif prote 99.8 1.7E-18 5.9E-23 133.9 12.4 83 280-362 5-88 (116)
68 1x5u_A Splicing factor 3B subu 99.8 1.8E-18 6.2E-23 131.7 12.3 84 280-363 13-98 (105)
69 2cpz_A CUG triplet repeat RNA- 99.8 8.1E-19 2.8E-23 136.0 10.5 84 104-187 23-106 (115)
70 2do0_A HnRNP M, heterogeneous 99.8 2.6E-18 8.9E-23 133.0 13.3 83 280-362 13-96 (114)
71 3ns6_A Eukaryotic translation 99.8 1.7E-19 5.8E-24 135.8 6.3 82 105-186 5-93 (100)
72 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.6E-18 5.4E-23 131.3 11.8 84 280-363 10-95 (102)
73 1x5s_A Cold-inducible RNA-bind 99.8 6.3E-19 2.1E-23 133.5 9.4 86 102-187 8-93 (102)
74 3q2s_C Cleavage and polyadenyl 99.8 3.1E-19 1.1E-23 155.1 8.8 81 105-185 67-149 (229)
75 2cpf_A RNA binding motif prote 99.8 7.4E-19 2.5E-23 132.1 9.7 84 104-187 3-89 (98)
76 2dgu_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 129.4 13.5 79 280-364 9-87 (103)
77 1x5t_A Splicing factor 3B subu 99.8 4.8E-19 1.6E-23 132.6 8.4 84 104-187 3-87 (96)
78 2dgs_A DAZ-associated protein 99.8 2.5E-18 8.4E-23 129.4 12.3 83 280-363 8-92 (99)
79 1x5t_A Splicing factor 3B subu 99.8 1.6E-18 5.5E-23 129.7 11.1 83 280-362 3-88 (96)
80 2kxn_B Transformer-2 protein h 99.8 8.8E-19 3E-23 138.1 10.1 87 101-187 41-127 (129)
81 1x4h_A RNA-binding protein 28; 99.8 1.3E-18 4.3E-23 134.1 10.8 86 102-187 11-102 (111)
82 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.9E-19 2E-23 133.7 8.5 85 103-187 9-93 (102)
83 2d9p_A Polyadenylate-binding p 99.8 2.2E-18 7.7E-23 130.7 11.7 82 104-187 13-94 (103)
84 3s7r_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 126.7 10.9 81 102-183 7-87 (87)
85 2d9p_A Polyadenylate-binding p 99.8 1.5E-18 5.3E-23 131.6 10.7 84 280-364 13-97 (103)
86 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-18 6.2E-23 131.0 10.9 84 280-363 10-95 (102)
87 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-18 1E-22 130.5 12.1 83 104-187 13-98 (105)
88 2dnm_A SRP46 splicing factor; 99.8 2.3E-18 7.7E-23 130.7 11.3 83 280-362 11-95 (103)
89 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-18 5.6E-23 127.1 10.1 81 280-360 4-86 (87)
90 3md1_A Nuclear and cytoplasmic 99.8 2.1E-18 7.3E-23 125.3 10.7 79 283-361 2-82 (83)
91 2cph_A RNA binding motif prote 99.8 1.7E-18 5.9E-23 132.4 10.7 86 103-188 12-99 (107)
92 1x4a_A Splicing factor, argini 99.8 5.5E-18 1.9E-22 129.9 13.5 81 280-361 20-100 (109)
93 1s79_A Lupus LA protein; RRM, 99.8 9.1E-19 3.1E-23 131.9 8.7 80 104-185 9-88 (103)
94 2wbr_A GW182, gawky, LD47780P; 99.8 2E-18 6.9E-23 122.2 9.8 73 282-358 7-79 (89)
95 1x4h_A RNA-binding protein 28; 99.8 5.4E-18 1.8E-22 130.6 13.1 85 280-364 13-105 (111)
96 2cph_A RNA binding motif prote 99.8 5.1E-18 1.8E-22 129.7 12.9 84 280-363 13-100 (107)
97 2x1f_A MRNA 3'-END-processing 99.8 3.6E-18 1.2E-22 127.7 11.7 81 282-362 2-84 (96)
98 2cpz_A CUG triplet repeat RNA- 99.8 2.7E-18 9.3E-23 133.0 11.4 85 280-364 23-109 (115)
99 2cq1_A PTB-like protein L; RRM 99.8 5.6E-18 1.9E-22 126.7 12.6 81 280-364 13-95 (101)
100 2div_A TRNA selenocysteine ass 99.8 1.4E-18 4.7E-23 130.9 9.4 84 103-186 6-94 (99)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.6E-18 8.9E-23 125.5 10.6 79 280-358 5-85 (85)
102 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-18 1E-22 130.5 11.4 85 280-364 13-101 (105)
103 1x4d_A Matrin 3; structural ge 99.8 1.6E-18 5.4E-23 129.4 9.4 79 280-362 13-94 (102)
104 3ucg_A Polyadenylate-binding p 99.8 1.9E-18 6.4E-23 127.4 9.7 80 106-186 6-85 (89)
105 2ywk_A Putative RNA-binding pr 99.8 2.2E-18 7.4E-23 128.7 10.2 82 103-185 13-94 (95)
106 1wi8_A EIF-4B, eukaryotic tran 99.8 4.7E-18 1.6E-22 129.1 12.2 81 280-362 13-96 (104)
107 1x4e_A RNA binding motif, sing 99.8 5.3E-19 1.8E-23 129.1 6.6 82 103-184 2-83 (85)
108 1u6f_A Tcubp1, RNA-binding pro 99.8 4.6E-18 1.6E-22 136.6 12.8 83 280-362 40-124 (139)
109 2cpf_A RNA binding motif prote 99.8 1.8E-18 6.1E-23 130.0 9.7 84 280-363 3-91 (98)
110 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-18 3.7E-23 130.1 8.3 80 102-187 12-93 (105)
111 3ex7_B RNA-binding protein 8A; 99.8 2E-18 6.8E-23 136.2 10.4 83 280-362 20-104 (126)
112 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-18 5.8E-23 133.1 9.7 84 103-186 23-106 (110)
113 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-18 5.2E-23 132.4 9.2 85 103-187 10-97 (106)
114 1wex_A Hypothetical protein (r 99.8 4.1E-18 1.4E-22 128.3 11.4 81 280-364 13-95 (104)
115 2fy1_A RNA-binding motif prote 99.8 2.3E-18 7.9E-23 133.2 10.3 84 103-187 4-87 (116)
116 2cq0_A Eukaryotic translation 99.8 3.1E-18 1.1E-22 129.9 10.8 84 280-363 13-98 (103)
117 2dng_A Eukaryotic translation 99.8 3E-18 1E-22 129.9 10.7 82 104-187 13-94 (103)
118 3r27_A HnRNP L, heterogeneous 99.8 2.8E-18 9.7E-23 126.5 10.1 78 103-186 18-97 (100)
119 1oo0_B CG8781-PA, drosophila Y 99.8 3.9E-18 1.3E-22 131.0 11.3 83 280-362 24-108 (110)
120 2e5h_A Zinc finger CCHC-type a 99.8 6E-18 2E-22 126.1 12.0 79 280-358 14-94 (94)
121 2dhg_A TRNA selenocysteine ass 99.8 2.3E-18 8E-23 130.9 10.0 85 102-187 5-91 (104)
122 2err_A Ataxin-2-binding protei 99.8 2E-18 6.8E-23 132.1 9.6 81 280-360 27-107 (109)
123 4a8x_A RNA-binding protein wit 99.8 1.8E-18 6.2E-23 127.2 9.0 82 105-186 3-85 (88)
124 2ywk_A Putative RNA-binding pr 99.8 2.7E-18 9.1E-23 128.3 10.0 80 280-359 14-94 (95)
125 3n9u_C Cleavage and polyadenyl 99.8 2E-18 6.7E-23 140.5 9.9 82 105-186 54-137 (156)
126 3ulh_A THO complex subunit 4; 99.8 4.2E-18 1.4E-22 130.2 11.0 82 102-184 25-106 (107)
127 2khc_A Testis-specific RNP-typ 99.8 1.7E-18 5.7E-23 134.9 9.0 82 103-184 37-118 (118)
128 2dgv_A HnRNP M, heterogeneous 99.8 4.5E-18 1.5E-22 126.2 10.8 83 103-187 5-87 (92)
129 2cqc_A Arginine/serine-rich sp 99.8 4.9E-18 1.7E-22 126.8 11.0 80 280-359 13-94 (95)
130 2dhg_A TRNA selenocysteine ass 99.8 2.6E-18 8.8E-23 130.6 9.5 84 280-363 7-93 (104)
131 2cpe_A RNA-binding protein EWS 99.8 2.5E-18 8.4E-23 132.9 9.6 85 103-187 12-104 (113)
132 2dgp_A Bruno-like 4, RNA bindi 99.8 5.6E-18 1.9E-22 129.3 11.3 83 280-362 11-98 (106)
133 2ek1_A RNA-binding protein 12; 99.8 1.2E-18 4.2E-23 130.1 7.4 81 104-184 13-93 (95)
134 2hvz_A Splicing factor, argini 99.8 1.9E-18 6.4E-23 130.6 8.3 84 107-195 1-100 (101)
135 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.6E-18 8.9E-23 142.0 9.9 84 280-363 70-155 (165)
136 2dgv_A HnRNP M, heterogeneous 99.8 2.7E-18 9.4E-23 127.4 9.0 83 280-362 6-88 (92)
137 1p1t_A Cleavage stimulation fa 99.8 2.6E-18 9E-23 130.6 9.0 83 105-187 7-89 (104)
138 2dng_A Eukaryotic translation 99.8 8E-18 2.7E-22 127.6 11.6 81 280-362 13-95 (103)
139 2dh8_A DAZ-associated protein 99.8 2.1E-18 7.2E-23 131.4 8.4 84 103-187 13-96 (105)
140 2ad9_A Polypyrimidine tract-bi 99.8 3.9E-18 1.3E-22 130.6 9.8 81 280-364 29-111 (119)
141 1p27_B RNA-binding protein 8A; 99.8 3.7E-18 1.3E-22 130.3 9.7 82 280-361 21-104 (106)
142 2wbr_A GW182, gawky, LD47780P; 99.8 2.4E-18 8.2E-23 121.8 7.9 74 105-184 6-79 (89)
143 1wi8_A EIF-4B, eukaryotic tran 99.8 3.6E-18 1.2E-22 129.7 9.6 82 104-187 13-95 (104)
144 2cqp_A RNA-binding protein 12; 99.8 1.9E-18 6.6E-23 129.8 8.0 83 104-186 13-95 (98)
145 1x4d_A Matrin 3; structural ge 99.8 2.3E-18 8E-23 128.5 8.3 80 104-189 13-95 (102)
146 4a8x_A RNA-binding protein wit 99.8 5.1E-18 1.7E-22 124.8 10.0 81 281-361 3-86 (88)
147 2cqd_A RNA-binding region cont 99.7 3.6E-18 1.2E-22 132.5 9.6 82 104-186 15-96 (116)
148 2cpe_A RNA-binding protein EWS 99.7 9.6E-18 3.3E-22 129.5 11.9 83 280-362 13-105 (113)
149 1u6f_A Tcubp1, RNA-binding pro 99.7 5.5E-18 1.9E-22 136.1 11.0 86 102-187 38-123 (139)
150 1s79_A Lupus LA protein; RRM, 99.7 3E-18 1E-22 129.1 8.7 79 280-359 9-88 (103)
151 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.9E-18 2.7E-22 137.9 11.9 85 102-186 35-119 (156)
152 3ex7_B RNA-binding protein 8A; 99.7 4.1E-18 1.4E-22 134.4 9.8 84 103-186 19-102 (126)
153 2cpi_A CCR4-NOT transcription 99.7 6.1E-18 2.1E-22 129.9 10.5 82 280-361 13-102 (111)
154 2mss_A Protein (musashi1); RNA 99.7 1.5E-18 5.1E-23 123.4 6.5 75 108-183 1-75 (75)
155 2cq3_A RNA-binding protein 9; 99.7 1.1E-17 3.7E-22 126.9 11.7 83 103-187 12-94 (103)
156 2dnq_A RNA-binding protein 4B; 99.7 8.7E-18 3E-22 124.0 10.9 77 280-362 6-82 (90)
157 3ns6_A Eukaryotic translation 99.7 1.5E-18 5.1E-23 130.6 6.7 79 282-360 6-93 (100)
158 2kn4_A Immunoglobulin G-bindin 99.7 2E-17 6.8E-22 136.0 13.9 133 135-273 2-153 (158)
159 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.9E-18 3E-22 127.4 10.8 83 103-187 12-94 (103)
160 1x4c_A Splicing factor, argini 99.7 2.2E-17 7.6E-22 126.1 12.9 78 280-362 13-95 (108)
161 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.6E-18 8.8E-23 129.4 7.5 82 103-186 16-98 (100)
162 1wez_A HnRNP H', FTP-3, hetero 99.7 5.2E-18 1.8E-22 127.8 9.1 82 102-186 11-92 (102)
163 2dgw_A Probable RNA-binding pr 99.7 9.5E-18 3.3E-22 124.1 10.4 81 103-186 7-87 (91)
164 2dgx_A KIAA0430 protein; RRM d 99.7 5.9E-18 2E-22 126.4 9.3 81 104-187 7-91 (96)
165 2jrs_A RNA-binding protein 39; 99.7 6.4E-18 2.2E-22 128.9 9.6 82 280-361 24-107 (108)
166 2rs2_A Musashi-1, RNA-binding 99.7 4.8E-18 1.6E-22 129.9 8.9 85 102-187 21-105 (109)
167 2do0_A HnRNP M, heterogeneous 99.7 1.4E-17 4.9E-22 128.8 11.7 81 104-185 13-93 (114)
168 2kt5_A RNA and export factor-b 99.7 1.1E-17 3.6E-22 131.5 11.1 85 103-188 32-116 (124)
169 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.6E-18 5.4E-23 124.0 5.7 76 107-183 1-76 (77)
170 2cq4_A RNA binding motif prote 99.7 5.4E-18 1.8E-22 131.1 9.2 83 280-363 23-107 (114)
171 2cqg_A TDP-43, TAR DNA-binding 99.7 1.7E-17 5.9E-22 125.7 11.4 82 104-187 13-94 (103)
172 2m2b_A RNA-binding protein 10; 99.7 3.1E-18 1.1E-22 135.7 7.5 83 105-188 22-110 (131)
173 2cpj_A Non-POU domain-containi 99.7 1.4E-17 4.7E-22 125.3 10.7 79 280-362 13-91 (99)
174 1x5o_A RNA binding motif, sing 99.7 2.1E-17 7.3E-22 127.8 12.0 82 104-186 23-112 (114)
175 1x4g_A Nucleolysin TIAR; struc 99.7 2E-17 6.9E-22 126.7 11.8 80 280-363 23-102 (109)
176 3ulh_A THO complex subunit 4; 99.7 1.1E-17 3.9E-22 127.8 10.3 79 280-358 27-106 (107)
177 1x4f_A Matrin 3; structural ge 99.7 3.9E-18 1.3E-22 129.1 7.5 84 103-192 22-108 (112)
178 2dgt_A RNA-binding protein 30; 99.7 3.2E-17 1.1E-21 121.5 12.4 77 280-362 8-84 (92)
179 2la6_A RNA-binding protein FUS 99.7 8.7E-18 3E-22 126.4 9.4 79 280-358 11-99 (99)
180 1x4a_A Splicing factor, argini 99.7 1.4E-17 4.8E-22 127.6 10.8 82 103-187 19-100 (109)
181 3p5t_L Cleavage and polyadenyl 99.7 1.5E-18 5.2E-23 127.9 5.1 80 283-362 2-85 (90)
182 2hvz_A Splicing factor, argini 99.7 9E-18 3.1E-22 126.8 9.5 77 283-362 1-77 (101)
183 2cpj_A Non-POU domain-containi 99.7 9.6E-18 3.3E-22 126.1 9.6 85 103-193 12-96 (99)
184 2fc9_A NCL protein; structure 99.7 2.5E-17 8.5E-22 124.4 11.9 80 280-362 13-93 (101)
185 2cpi_A CCR4-NOT transcription 99.7 8.6E-18 2.9E-22 129.1 9.5 86 104-189 13-104 (111)
186 1why_A Hypothetical protein ri 99.7 2.2E-17 7.7E-22 123.6 11.5 78 280-361 15-94 (97)
187 1wg5_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 127.0 9.7 82 104-187 13-95 (104)
188 1x4b_A Heterogeneous nuclear r 99.7 1.9E-17 6.3E-22 128.5 11.4 82 280-362 25-108 (116)
189 2hgl_A HNRPF protein, heteroge 99.7 4.3E-18 1.5E-22 134.5 7.7 83 102-186 40-125 (136)
190 2cpy_A RNA-binding protein 12; 99.7 2.5E-18 8.4E-23 132.8 6.2 82 280-362 13-96 (114)
191 2kt5_A RNA and export factor-b 99.7 5E-17 1.7E-21 127.6 13.8 84 279-362 32-116 (124)
192 1wf1_A RNA-binding protein RAL 99.7 2.7E-17 9.1E-22 126.3 11.9 94 259-361 7-101 (110)
193 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-17 3.6E-22 128.2 9.5 80 102-187 27-108 (119)
194 2kxn_B Transformer-2 protein h 99.7 7.9E-18 2.7E-22 132.6 9.1 82 280-361 44-127 (129)
195 2div_A TRNA selenocysteine ass 99.7 8.3E-18 2.8E-22 126.6 8.8 82 280-361 7-95 (99)
196 2dis_A Unnamed protein product 99.7 8E-18 2.7E-22 129.1 8.9 86 103-188 5-94 (109)
197 2cq4_A RNA binding motif prote 99.7 4.3E-18 1.5E-22 131.7 7.4 80 106-186 25-104 (114)
198 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.8E-18 1.6E-22 127.9 7.4 80 280-361 17-99 (100)
199 2cq1_A PTB-like protein L; RRM 99.7 2E-17 6.7E-22 123.7 10.7 77 104-186 13-91 (101)
200 2nlw_A Eukaryotic translation 99.7 7.4E-18 2.5E-22 128.0 8.3 80 105-186 14-100 (105)
201 3ucg_A Polyadenylate-binding p 99.7 1.8E-17 6E-22 122.1 10.1 79 281-360 5-85 (89)
202 2ki2_A SS-DNA binding protein 99.7 1.5E-18 5E-23 128.2 4.1 80 107-187 2-81 (90)
203 2dh8_A DAZ-associated protein 99.7 1.4E-17 4.7E-22 126.8 9.6 83 280-363 14-98 (105)
204 2dgw_A Probable RNA-binding pr 99.7 2.1E-17 7.3E-22 122.2 10.3 80 280-361 8-88 (91)
205 2krb_A Eukaryotic translation 99.7 4E-18 1.4E-22 123.0 6.0 73 106-180 1-80 (81)
206 2err_A Ataxin-2-binding protei 99.7 1.1E-17 3.8E-22 127.9 8.8 83 102-186 25-107 (109)
207 2nlw_A Eukaryotic translation 99.7 1.9E-17 6.5E-22 125.8 9.9 82 280-361 13-101 (105)
208 2khc_A Testis-specific RNP-typ 99.7 2E-17 6.8E-22 128.8 10.2 79 280-358 38-118 (118)
209 2lea_A Serine/arginine-rich sp 99.7 3.5E-18 1.2E-22 135.8 5.9 83 104-186 45-127 (135)
210 2cpd_A Apobec-1 stimulating pr 99.7 8.8E-17 3E-21 120.8 13.3 77 280-362 13-91 (99)
211 2cpy_A RNA-binding protein 12; 99.7 4.7E-18 1.6E-22 131.2 6.4 82 103-186 12-94 (114)
212 2a3j_A U1 small nuclear ribonu 99.7 2E-17 6.8E-22 129.1 10.0 83 103-188 26-112 (127)
213 2jvr_A Nucleolar protein 3; RN 99.7 2.1E-17 7.1E-22 125.6 9.9 79 280-360 26-105 (111)
214 1wex_A Hypothetical protein (r 99.7 2.3E-17 8E-22 124.1 10.0 78 104-187 13-92 (104)
215 1x4f_A Matrin 3; structural ge 99.7 7.8E-18 2.7E-22 127.4 7.4 80 280-363 23-105 (112)
216 2db1_A Heterogeneous nuclear r 99.7 9.7E-18 3.3E-22 130.1 8.2 80 104-185 15-97 (118)
217 2m2b_A RNA-binding protein 10; 99.7 1.8E-17 6.3E-22 131.3 9.9 82 280-362 21-110 (131)
218 1wg5_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 124.0 11.0 82 280-362 13-96 (104)
219 1x4b_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 129.5 8.6 81 106-187 27-107 (116)
220 2dnp_A RNA-binding protein 14; 99.7 4.6E-17 1.6E-21 120.0 11.3 77 280-362 7-83 (90)
221 2rs2_A Musashi-1, RNA-binding 99.7 4.5E-17 1.5E-21 124.5 11.5 83 280-363 23-107 (109)
222 2cqg_A TDP-43, TAR DNA-binding 99.7 6.5E-17 2.2E-21 122.5 12.3 82 280-363 13-96 (103)
223 2dis_A Unnamed protein product 99.7 4.9E-17 1.7E-21 124.7 11.7 84 280-363 6-95 (109)
224 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.7E-17 6E-22 133.5 9.7 81 103-183 60-140 (140)
225 2jwn_A Embryonic polyadenylate 99.7 1.7E-17 5.7E-22 130.4 9.3 81 105-186 35-115 (124)
226 3s7r_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 119.9 10.2 77 280-357 9-87 (87)
227 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4.2E-22 126.7 7.8 78 281-360 15-93 (109)
228 2ytc_A PRE-mRNA-splicing facto 99.7 2.9E-17 9.8E-22 119.8 9.4 75 280-358 10-85 (85)
229 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4.2E-22 125.7 7.6 79 280-360 13-92 (102)
230 1wel_A RNA-binding protein 12; 99.7 5.3E-18 1.8E-22 133.1 5.7 83 103-186 22-104 (124)
231 2dnq_A RNA-binding protein 4B; 99.7 4.7E-17 1.6E-21 120.0 10.4 77 103-187 5-81 (90)
232 2a3j_A U1 small nuclear ribonu 99.7 3E-17 1E-21 128.2 9.7 82 280-362 27-112 (127)
233 2xnq_A Nuclear polyadenylated 99.7 6.9E-17 2.4E-21 120.6 11.3 75 280-360 20-95 (97)
234 1whx_A Hypothetical protein ri 99.7 4.5E-17 1.5E-21 124.8 10.5 78 280-361 8-85 (111)
235 2fc9_A NCL protein; structure 99.7 3.3E-17 1.1E-21 123.7 9.6 81 103-187 12-92 (101)
236 2mss_A Protein (musashi1); RNA 99.7 1.5E-17 5E-22 118.2 7.0 73 284-357 1-75 (75)
237 1p1t_A Cleavage stimulation fa 99.7 1.8E-17 6.2E-22 126.0 8.0 84 280-363 6-91 (104)
238 2cpx_A Hypothetical protein FL 99.7 4.5E-17 1.6E-21 126.2 10.4 82 280-363 23-108 (115)
239 1wg1_A KIAA1579 protein, homol 99.7 2.9E-17 1E-21 120.4 8.8 84 104-194 3-86 (88)
240 1why_A Hypothetical protein ri 99.7 5.2E-17 1.8E-21 121.6 10.4 79 103-187 14-94 (97)
241 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-17 5.6E-22 126.2 7.6 82 100-185 22-104 (111)
242 3n9u_C Cleavage and polyadenyl 99.7 2.6E-17 9E-22 133.9 9.3 80 281-360 54-137 (156)
243 2kvi_A Nuclear polyadenylated 99.7 2E-17 7E-22 123.5 8.0 77 280-362 8-85 (96)
244 2jvo_A Nucleolar protein 3; nu 99.7 4.1E-17 1.4E-21 124.3 9.8 77 280-362 29-105 (108)
245 2diu_A KIAA0430 protein; struc 99.7 6.5E-17 2.2E-21 115.5 10.0 81 103-193 6-91 (96)
246 2krb_A Eukaryotic translation 99.7 1.2E-17 4.2E-22 120.5 6.4 73 283-355 2-81 (81)
247 2la4_A Nuclear and cytoplasmic 99.7 3.2E-17 1.1E-21 123.8 8.8 82 98-185 19-100 (101)
248 2dnn_A RNA-binding protein 12; 99.7 2.9E-17 9.9E-22 124.6 8.6 78 106-186 16-93 (109)
249 2db1_A Heterogeneous nuclear r 99.7 7.4E-18 2.5E-22 130.8 5.4 81 280-361 15-99 (118)
250 2fc8_A NCL protein; structure 99.7 6E-17 2E-21 122.5 10.3 83 102-187 11-93 (102)
251 2cqp_A RNA-binding protein 12; 99.7 1.8E-17 6.3E-22 124.4 7.3 81 280-360 13-95 (98)
252 1sjr_A Polypyrimidine tract-bi 99.7 8.7E-17 3E-21 129.4 11.6 81 280-362 44-126 (164)
253 1x4g_A Nucleolysin TIAR; struc 99.7 4.8E-17 1.6E-21 124.6 9.6 81 102-188 21-101 (109)
254 2ek1_A RNA-binding protein 12; 99.7 1.2E-17 4.1E-22 124.7 6.0 80 280-359 13-94 (95)
255 2la4_A Nuclear and cytoplasmic 99.7 3.1E-17 1.1E-21 123.8 8.4 76 281-360 26-101 (101)
256 2lmi_A GRSF-1, G-rich sequence 99.7 7.8E-18 2.7E-22 128.4 5.0 81 103-185 8-91 (107)
257 1iqt_A AUF1, heterogeneous nuc 99.7 7.1E-18 2.4E-22 119.9 4.5 75 108-183 1-75 (75)
258 2hgn_A Heterogeneous nuclear r 99.7 9.2E-18 3.1E-22 133.0 5.3 80 280-361 44-124 (139)
259 2jwn_A Embryonic polyadenylate 99.7 5.6E-17 1.9E-21 127.4 9.8 80 280-360 34-115 (124)
260 2cq2_A Hypothetical protein LO 99.7 7.7E-17 2.6E-21 121.9 9.9 79 280-362 23-108 (114)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-16 4.3E-21 128.4 11.9 78 280-357 61-140 (140)
262 1x4e_A RNA binding motif, sing 99.7 7.7E-18 2.6E-22 122.8 4.3 79 280-358 3-83 (85)
263 2cqh_A IGF-II mRNA-binding pro 99.7 2.9E-17 9.9E-22 122.0 7.5 78 280-362 6-85 (93)
264 1x5o_A RNA binding motif, sing 99.7 8.6E-17 2.9E-21 124.3 10.4 81 280-360 23-112 (114)
265 1nu4_A U1A RNA binding domain; 99.7 3E-17 1E-21 123.0 7.6 83 103-188 5-91 (97)
266 1x4c_A Splicing factor, argini 99.7 9.5E-17 3.3E-21 122.6 10.5 77 104-187 13-94 (108)
267 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.5E-17 8.4E-22 117.7 6.7 74 283-357 1-76 (77)
268 2fc8_A NCL protein; structure 99.7 1E-16 3.5E-21 121.2 10.4 80 280-362 13-94 (102)
269 2xnq_A Nuclear polyadenylated 99.7 1.2E-16 4.1E-21 119.3 10.6 79 100-186 16-95 (97)
270 2e5j_A Methenyltetrahydrofolat 99.7 5.9E-17 2E-21 121.3 8.9 79 280-361 17-95 (97)
271 1nu4_A U1A RNA binding domain; 99.7 5.3E-17 1.8E-21 121.6 8.6 81 280-362 6-91 (97)
272 2e5g_A U6 snRNA-specific termi 99.7 8.2E-17 2.8E-21 119.7 9.5 79 280-362 6-84 (94)
273 3lqv_A PRE-mRNA branch site pr 99.7 8.1E-17 2.8E-21 124.7 9.8 82 280-362 6-87 (115)
274 2ki2_A SS-DNA binding protein 99.7 1.2E-17 4.2E-22 123.2 4.8 79 283-362 2-82 (90)
275 1fj7_A Nucleolin RBD1, protein 99.7 4.8E-18 1.7E-22 128.3 2.5 82 104-187 15-96 (101)
276 2ytc_A PRE-mRNA-splicing facto 99.7 7.4E-17 2.5E-21 117.6 8.8 76 103-184 9-85 (85)
277 3zzy_A Polypyrimidine tract-bi 99.7 2.1E-16 7.2E-21 122.4 11.7 81 280-363 26-109 (130)
278 2cpx_A Hypothetical protein FL 99.7 9.2E-18 3.2E-22 130.1 4.0 81 103-187 22-106 (115)
279 2e5j_A Methenyltetrahydrofolat 99.7 7.1E-17 2.4E-21 120.8 8.5 79 104-187 17-95 (97)
280 2dha_A FLJ20171 protein; RRM d 99.7 2.2E-17 7.5E-22 128.0 5.9 80 104-185 21-104 (123)
281 2e44_A Insulin-like growth fac 99.7 1.5E-16 5.2E-21 118.8 10.3 80 280-361 13-93 (96)
282 2f3j_A RNA and export factor b 99.7 8.1E-17 2.8E-21 134.0 9.6 86 102-188 84-169 (177)
283 2hgm_A HNRPF protein, heteroge 99.7 3.6E-17 1.2E-21 127.0 6.8 80 103-185 39-120 (126)
284 2hgl_A HNRPF protein, heteroge 99.7 3E-17 1E-21 129.6 6.5 81 280-361 42-126 (136)
285 2jvo_A Nucleolar protein 3; nu 99.7 1.3E-16 4.4E-21 121.5 9.5 78 102-187 27-104 (108)
286 1fjc_A Nucleolin RBD2, protein 99.7 8.5E-17 2.9E-21 120.2 8.3 79 280-362 14-93 (96)
287 2dgt_A RNA-binding protein 30; 99.7 1.7E-16 5.7E-21 117.6 9.7 78 102-187 6-83 (92)
288 2lcw_A RNA-binding protein FUS 99.5 2.7E-18 9.4E-23 133.2 0.0 84 104-187 5-96 (116)
289 2e5i_A Heterogeneous nuclear r 99.7 4.1E-16 1.4E-20 120.4 12.2 78 281-362 24-104 (124)
290 2j8a_A Histone-lysine N-methyl 99.7 5.1E-17 1.7E-21 122.9 6.8 79 107-185 3-95 (136)
291 1whx_A Hypothetical protein ri 99.7 5.5E-17 1.9E-21 124.3 7.2 75 105-185 9-83 (111)
292 1x5p_A Negative elongation fac 99.7 5.9E-16 2E-20 115.7 12.7 77 280-362 13-89 (97)
293 2hgn_A Heterogeneous nuclear r 99.7 1.8E-17 6.3E-22 131.3 4.6 81 103-186 43-123 (139)
294 2dnp_A RNA-binding protein 14; 99.7 1.8E-16 6.1E-21 116.8 9.3 78 102-187 5-82 (90)
295 1fjc_A Nucleolin RBD2, protein 99.7 5.5E-17 1.9E-21 121.3 6.5 78 105-187 15-92 (96)
296 1fj7_A Nucleolin RBD1, protein 99.7 2.8E-17 9.7E-22 124.1 4.9 82 280-363 15-98 (101)
297 2kvi_A Nuclear polyadenylated 99.7 1.2E-16 4E-21 119.3 8.2 76 103-186 7-83 (96)
298 2lmi_A GRSF-1, G-rich sequence 99.7 4E-17 1.4E-21 124.4 5.5 81 280-361 9-93 (107)
299 2dgu_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 119.7 9.3 76 104-187 9-84 (103)
300 2diu_A KIAA0430 protein; struc 99.7 3.8E-16 1.3E-20 111.5 9.9 75 281-363 7-87 (96)
301 2xs2_A Deleted in azoospermia- 99.7 4.3E-17 1.5E-21 123.3 5.3 80 105-187 8-87 (102)
302 2lcw_A RNA-binding protein FUS 99.5 4.8E-18 1.6E-22 131.8 0.0 83 280-362 5-97 (116)
303 1iqt_A AUF1, heterogeneous nuc 99.7 7.1E-17 2.4E-21 114.6 6.1 73 284-357 1-75 (75)
304 3beg_B Splicing factor, argini 99.7 2.6E-16 8.8E-21 121.5 9.6 75 280-359 14-93 (115)
305 2cpd_A Apobec-1 stimulating pr 99.7 4.4E-16 1.5E-20 117.0 10.6 76 104-187 13-90 (99)
306 2i2y_A Fusion protein consists 99.7 2.3E-16 7.8E-21 128.3 9.4 81 102-187 69-149 (150)
307 3d2w_A TAR DNA-binding protein 99.7 7.7E-16 2.6E-20 112.7 10.6 76 280-362 9-86 (89)
308 2e44_A Insulin-like growth fac 99.7 2.7E-16 9.3E-21 117.5 8.2 78 105-186 14-92 (96)
309 2dnl_A Cytoplasmic polyadenyla 99.7 3.8E-16 1.3E-20 120.5 9.2 79 104-185 6-87 (114)
310 2dha_A FLJ20171 protein; RRM d 99.6 8.1E-17 2.8E-21 124.8 5.2 81 280-361 21-106 (123)
311 2xs2_A Deleted in azoospermia- 99.6 1.7E-16 5.8E-21 120.0 6.9 81 280-362 7-88 (102)
312 3md3_A Nuclear and cytoplasmic 99.6 8.2E-16 2.8E-20 127.5 11.6 82 103-184 84-165 (166)
313 2cqh_A IGF-II mRNA-binding pro 99.6 1.8E-16 6.3E-21 117.6 6.7 78 103-187 5-84 (93)
314 1wel_A RNA-binding protein 12; 99.6 9.5E-17 3.3E-21 125.9 5.4 81 280-361 23-105 (124)
315 2hgm_A HNRPF protein, heteroge 99.6 1.8E-16 6.3E-21 123.0 6.9 80 280-361 40-122 (126)
316 2f3j_A RNA and export factor b 99.6 4.3E-16 1.5E-20 129.6 9.5 82 280-361 86-168 (177)
317 2e5g_A U6 snRNA-specific termi 99.6 5.7E-16 1.9E-20 115.1 9.2 78 103-186 5-82 (94)
318 1wg1_A KIAA1579 protein, homol 99.6 3.8E-16 1.3E-20 114.5 7.8 76 281-361 4-79 (88)
319 2cq2_A Hypothetical protein LO 99.6 4.2E-16 1.4E-20 117.9 7.9 79 100-184 19-104 (114)
320 1wf1_A RNA-binding protein RAL 99.6 4.8E-16 1.6E-20 119.2 8.4 74 105-186 26-100 (110)
321 1wf0_A TDP-43, TAR DNA-binding 99.6 5.2E-16 1.8E-20 113.8 7.8 78 280-362 3-80 (88)
322 2pe8_A Splicing factor 45; RRM 99.6 1.7E-15 5.7E-20 114.1 10.7 83 103-185 5-93 (105)
323 1x5p_A Negative elongation fac 99.6 1.4E-15 4.7E-20 113.7 10.1 77 103-187 12-88 (97)
324 3egn_A RNA-binding protein 40; 99.6 6E-16 2.1E-20 124.7 8.5 81 103-186 42-130 (143)
325 3pgw_S U1-70K; protein-RNA com 99.6 7.9E-16 2.7E-20 146.3 10.6 82 105-186 101-182 (437)
326 1sjr_A Polypyrimidine tract-bi 99.6 1.7E-15 5.8E-20 121.9 10.9 80 104-187 44-125 (164)
327 4f02_A Polyadenylate-binding p 99.6 1.2E-15 4.1E-20 131.8 10.8 82 280-361 13-96 (213)
328 3d2w_A TAR DNA-binding protein 99.6 1.1E-15 3.7E-20 111.9 8.8 77 102-187 7-85 (89)
329 2qfj_A FBP-interacting repress 99.6 2.5E-15 8.4E-20 130.4 12.4 84 104-187 123-206 (216)
330 2g4b_A Splicing factor U2AF 65 99.6 1.3E-15 4.6E-20 127.0 10.3 81 104-184 92-172 (172)
331 3zzy_A Polypyrimidine tract-bi 99.6 1.7E-15 5.8E-20 117.3 9.9 79 104-187 26-107 (130)
332 2hzc_A Splicing factor U2AF 65 99.6 1.6E-15 5.4E-20 111.0 9.3 72 280-356 4-86 (87)
333 2pe8_A Splicing factor 45; RRM 99.6 2.1E-15 7E-20 113.7 10.1 80 280-359 6-93 (105)
334 3egn_A RNA-binding protein 40; 99.6 4.1E-16 1.4E-20 125.7 6.5 81 280-362 43-132 (143)
335 2voo_A Lupus LA protein; RNA-b 99.6 3.7E-15 1.3E-19 125.9 12.7 122 241-363 65-190 (193)
336 3beg_B Splicing factor, argini 99.6 9.4E-16 3.2E-20 118.3 7.8 74 105-185 15-93 (115)
337 2yh0_A Splicing factor U2AF 65 99.6 2.3E-15 7.8E-20 128.7 10.7 85 103-187 111-195 (198)
338 3tyt_A Heterogeneous nuclear r 99.6 3E-15 1E-19 127.9 11.2 78 281-361 3-81 (205)
339 2j8a_A Histone-lysine N-methyl 99.6 1.6E-15 5.6E-20 114.7 8.3 77 283-359 3-95 (136)
340 1b7f_A Protein (SXL-lethal pro 99.6 5.4E-15 1.9E-19 122.8 11.9 80 104-183 87-168 (168)
341 2cjk_A Nuclear polyadenylated 99.6 9.8E-16 3.3E-20 127.2 7.2 81 105-186 86-166 (167)
342 1fxl_A Paraneoplastic encephal 99.6 4.7E-15 1.6E-19 123.0 10.9 81 282-362 2-84 (167)
343 2hzc_A Splicing factor U2AF 65 99.6 1.8E-15 6.3E-20 110.7 7.3 71 105-182 5-86 (87)
344 2e5i_A Heterogeneous nuclear r 99.6 7.4E-15 2.5E-19 113.4 10.9 75 107-187 26-103 (124)
345 1l3k_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 126.3 10.6 84 104-188 102-185 (196)
346 2bz2_A Negative elongation fac 99.6 3.9E-15 1.3E-19 115.6 8.6 77 280-362 37-113 (121)
347 2dnl_A Cytoplasmic polyadenyla 99.6 7.4E-15 2.5E-19 113.2 9.6 78 280-360 6-88 (114)
348 2dit_A HIV TAT specific factor 99.6 2.3E-14 7.8E-19 110.0 11.7 81 280-362 13-104 (112)
349 2voo_A Lupus LA protein; RNA-b 99.6 9.8E-15 3.4E-19 123.3 10.2 78 106-185 109-186 (193)
350 2bz2_A Negative elongation fac 99.6 8.9E-15 3E-19 113.6 9.1 78 102-187 35-112 (121)
351 3nmr_A Cugbp ELAV-like family 99.6 1.6E-14 5.6E-19 120.7 11.3 80 104-184 93-175 (175)
352 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-15 7E-20 110.6 4.9 77 104-187 3-79 (88)
353 3v4m_A Splicing factor U2AF 65 99.6 1.4E-14 4.8E-19 109.2 9.6 81 280-360 3-97 (105)
354 3u1l_A PRE-mRNA-splicing facto 99.6 4.2E-15 1.4E-19 128.0 7.2 80 280-363 132-232 (240)
355 2dit_A HIV TAT specific factor 99.5 3.2E-14 1.1E-18 109.1 10.1 86 100-189 9-105 (112)
356 3pgw_A U1-A; protein-RNA compl 99.5 2.4E-13 8.3E-18 122.8 17.5 80 280-361 7-91 (282)
357 2adc_A Polypyrimidine tract-bi 99.5 4.5E-14 1.6E-18 123.3 11.7 80 279-361 31-111 (229)
358 1fje_B Nucleolin RBD12, protei 99.5 1.7E-14 6E-19 120.6 8.6 77 105-186 98-174 (175)
359 3u1l_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.9E-19 123.4 8.6 80 102-187 130-230 (240)
360 3v4m_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 106.6 7.8 82 104-185 3-96 (105)
361 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.9E-19 109.5 4.5 71 287-357 20-103 (104)
362 3ue2_A Poly(U)-binding-splicin 99.5 5.3E-14 1.8E-18 108.0 7.4 80 280-359 18-108 (118)
363 1qm9_A Polypyrimidine tract-bi 99.5 7.2E-14 2.4E-18 119.3 9.1 78 282-362 3-81 (198)
364 3sde_A Paraspeckle component 1 99.5 1.3E-13 4.6E-18 122.8 10.8 77 280-360 20-96 (261)
365 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-13 5E-18 105.5 8.8 82 104-185 18-108 (118)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 6.5E-13 2.2E-17 98.5 10.7 66 292-362 27-92 (100)
367 1jmt_A Splicing factor U2AF 35 99.4 3.4E-14 1.1E-18 106.9 3.8 72 111-183 20-103 (104)
368 3s6e_A RNA-binding protein 39; 99.4 7.2E-13 2.5E-17 100.9 9.9 79 280-360 5-93 (114)
369 3tht_A Alkylated DNA repair pr 99.4 1.9E-12 6.4E-17 117.7 9.7 75 280-358 16-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.7E-12 1.6E-16 93.9 9.9 75 106-187 10-91 (100)
371 3s6e_A RNA-binding protein 39; 99.3 9.2E-12 3.1E-16 94.7 8.6 79 103-185 4-92 (114)
372 3tht_A Alkylated DNA repair pr 99.3 6.1E-12 2.1E-16 114.4 8.6 79 100-184 12-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 3E-11 1E-15 85.5 9.0 73 281-360 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 3.8E-11 1.3E-15 91.1 9.4 75 280-358 16-94 (121)
375 1owx_A Lupus LA protein, SS-B, 99.2 1.4E-10 4.8E-15 88.1 9.5 76 103-184 15-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 1E-10 3.5E-15 82.8 7.3 73 104-185 5-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 2E-10 6.8E-15 81.6 6.0 73 280-359 13-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 8.3E-10 2.9E-14 78.4 5.5 75 101-184 10-93 (95)
379 2l9w_A U4/U6 snRNA-associated- 98.9 8.3E-09 2.8E-13 74.6 8.5 71 282-356 21-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.8 1.5E-08 5.2E-13 87.6 10.7 84 102-185 120-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.8 3.7E-09 1.3E-13 91.5 6.5 67 293-359 140-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 4.6E-07 1.6E-11 65.6 7.8 72 105-182 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.2 2.1E-05 7.3E-10 56.6 11.4 87 104-199 6-99 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.1 6.2E-05 2.1E-09 54.2 11.2 76 281-363 7-87 (104)
385 1wey_A Calcipressin 1; structu 98.0 3E-05 1E-09 56.2 8.8 75 282-360 5-84 (104)
386 1wey_A Calcipressin 1; structu 97.8 2.5E-05 8.5E-10 56.6 5.3 74 106-185 5-83 (104)
387 1uw4_A UPF3X; nonsense mediate 97.8 8.8E-05 3E-09 52.9 7.4 69 107-175 2-72 (91)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00027 9.3E-09 50.3 7.8 77 283-359 2-87 (91)
389 1whv_A Poly(A)-specific ribonu 97.6 0.00028 9.5E-09 50.1 7.5 59 102-169 12-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.6 0.00033 1.1E-08 52.2 8.4 73 280-358 22-95 (119)
391 1wwh_A Nucleoporin 35, nucleop 97.1 0.0017 6E-08 48.4 7.4 71 105-183 23-94 (119)
392 2l08_A Regulator of nonsense t 97.0 0.00064 2.2E-08 48.6 4.3 69 106-174 9-79 (97)
393 1whv_A Poly(A)-specific ribonu 97.0 0.0014 4.8E-08 46.5 5.9 54 283-343 17-70 (100)
394 3ctr_A Poly(A)-specific ribonu 97.0 0.0015 5E-08 46.6 5.6 54 107-169 7-60 (101)
395 3ctr_A Poly(A)-specific ribonu 97.0 0.001 3.5E-08 47.4 4.7 54 283-343 7-60 (101)
396 2l08_A Regulator of nonsense t 96.9 0.0034 1.2E-07 44.9 7.3 78 281-358 8-94 (97)
397 3p3d_A Nucleoporin 53; structu 96.3 0.0063 2.2E-07 46.0 5.5 76 282-359 7-98 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.6 0.0057 2E-07 57.6 3.1 56 282-341 53-108 (464)
399 3p3d_A Nucleoporin 53; structu 95.6 0.0078 2.7E-07 45.5 3.2 78 105-184 6-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.5 0.0065 2.2E-07 57.2 3.1 55 106-166 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 87.3 1.6 5.6E-05 41.8 8.1 56 282-344 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 87.0 1.6 5.3E-05 42.0 7.7 56 106-170 440-495 (507)
403 4eyt_A Telomerase associated p 72.1 21 0.00071 24.5 8.5 69 280-354 10-85 (129)
404 2g0c_A ATP-dependent RNA helic 71.5 15 0.00052 24.5 6.6 60 292-358 11-75 (76)
405 4e8u_A Putative uncharacterize 65.2 7.7 0.00026 30.8 4.4 51 283-334 13-74 (172)
406 2g0c_A ATP-dependent RNA helic 61.6 21 0.00074 23.7 5.7 68 108-184 2-75 (76)
407 2pk2_A Cyclin-T1, protein TAT; 59.1 2 6.7E-05 39.2 0.0 13 293-305 228-240 (358)
408 3j21_T 50S ribosomal protein L 58.5 27 0.00094 24.1 5.7 58 284-342 24-83 (86)
409 4e8u_A Putative uncharacterize 48.5 39 0.0014 26.7 5.9 49 108-159 14-73 (172)
410 1vq8_S 50S ribosomal protein L 37.3 55 0.0019 22.5 4.5 56 284-340 23-80 (85)
411 3tj1_A RNA polymerase I-specif 35.9 7 0.00024 38.4 -0.3 7 159-165 416-422 (649)
412 4eyt_A Telomerase associated p 35.9 1E+02 0.0036 21.0 8.3 68 105-182 11-78 (129)
413 4a17_R RPL23A, 60S ribosomal p 34.3 72 0.0025 24.6 5.1 58 284-342 88-147 (150)
414 3u5e_X 60S ribosomal protein L 33.6 73 0.0025 24.3 5.0 58 284-342 80-139 (142)
415 3iz5_X 60S ribosomal protein L 26.4 77 0.0026 24.4 4.1 57 284-341 90-148 (152)
416 2zkr_s 60S ribosomal protein L 23.0 1.4E+02 0.0046 23.2 5.0 57 284-341 94-152 (156)
417 2e5p_A Protein PHF1, PHD finge 22.2 48 0.0016 21.4 1.9 19 307-331 28-46 (68)
418 2cu1_A Mitogen-activated prote 21.6 2.2E+02 0.0075 20.1 6.6 69 285-360 19-88 (103)
419 2m0o_A PHD finger protein 1; t 20.9 52 0.0018 21.9 1.9 19 307-331 45-63 (79)
420 2i9x_A Putative septation prot 20.5 1.5E+02 0.0052 20.4 4.3 25 132-156 5-29 (87)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.4e-45 Score=335.89 Aligned_cols=252 Identities=19% Similarity=0.320 Sum_probs=214.8
Q ss_pred hcCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 99 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
....+...++|||+|||+++|+++|+++|+.||.|..|+|+++..+ ++|||||+|.+.++|.+|+ .+++..|.|++|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEE
Confidence 4445667899999999999999999999999999999999998743 5899999999999999999 599999999999
Q ss_pred EEeecCCcccccccCCCCCCCHHHHHHHHHhhC-CceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcccccc
Q 014173 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257 (429)
Q Consensus 179 ~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~ 257 (429)
.|.++. .++|||+|||..+++++|+.+|..+| . |..+.++.++. +.+++||||.|.+.++|..|+..|++. .+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 999984 78999999999999999999999999 7 99999988743 678999999999999999999999765 56
Q ss_pred CCCcceeeecCCCCCCCch-hhhcccceEEEccCCCC-CCHHHHHHHHhccCCeeEEEecCCCC--CC-CcEEEEEeCCH
Q 014173 258 DGNTPTISWADPKSTPDHS-AAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAER 332 (429)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~nlp~~-~te~~L~~~F~~~G~i~~v~i~~~~~--~~-kg~afV~F~~~ 332 (429)
.|+.+.+.++.+....... ......++|||+|||.. +++++|+++|++||.|..|.|+++.. +. +|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 8999999999887665544 44466789999999999 99999999999999999999999876 55 99999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 333 ~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
++|.+|+ .|||..|+|++|+|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999875
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.4e-45 Score=332.77 Aligned_cols=247 Identities=21% Similarity=0.388 Sum_probs=226.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
..+.++|||+|||+++|+++|+++|+.|| |..|++ ++++|||||+|.+.++|.+|+..|++..|.|++|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34678999999999999999999999999 999988 56789999999999999999999999999999999999
Q ss_pred cCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcc
Q 014173 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (429)
Q Consensus 183 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 262 (429)
+.+.++|||+|||+.+++++|+.+|+.+|. |..+.++.++ .++.++|||||.|.+.++|..|+..+++. .+.++.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYSE-RTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEeeC-CCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEE
Confidence 999999999999999999999999999998 9999998873 56889999999999999999999999774 6789999
Q ss_pred eeeecCCCCCCCchhhhcccceEEEccCCCCC-CHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHH
Q 014173 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (429)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~ 340 (429)
.+.++.+...... ....++|||+|||..+ ++++|+++|++||.|..|.|+.+..+. +|+|||+|.+.++|.+|+.
T Consensus 168 ~v~~a~~~~~~~~---~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 168 YVHWTDAGQLTPA---LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp EEEECCGGGCCTT---TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHH
T ss_pred EEEECCCCCCCcc---cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHH
Confidence 9999887654322 2557899999999995 999999999999999999999988777 9999999999999999999
Q ss_pred HhCCceeCCeEEEEEeccCCCCC
Q 014173 341 DTEKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 341 ~l~~~~~~g~~l~v~~a~~~~~~ 363 (429)
.|||..|+|++|+|.|+.++..+
T Consensus 245 ~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 245 QADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HHTTCEETTEECEEEECCSSSCH
T ss_pred HhCCCccCCeEEEEEEecCCCcc
Confidence 99999999999999999887653
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.1e-37 Score=265.06 Aligned_cols=170 Identities=21% Similarity=0.430 Sum_probs=153.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+.+||||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
....
T Consensus 94 ~~~~---------------------------------------------------------------------------- 97 (213)
T 4f02_A 94 RDPS---------------------------------------------------------------------------- 97 (213)
T ss_dssp CCTH----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 3211
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~ 344 (429)
......++|||+|||+.+++++|+++|++||.|..|+|+++..+++|||||+|.+.++|.+|+..|||
T Consensus 98 ------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 98 ------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp ------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 00022358999999999999999999999999999999988766699999999999999999999999
Q ss_pred ceeCCeEEEEEeccCCCC
Q 014173 345 YEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 345 ~~~~g~~l~v~~a~~~~~ 362 (429)
..|+|++|+|.++.++..
T Consensus 166 ~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CEETTEECEEEECCCHHH
T ss_pred CEECCEEEEEEEcCCCcc
Confidence 999999999999987644
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.4e-33 Score=242.42 Aligned_cols=177 Identities=24% Similarity=0.459 Sum_probs=148.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345678999999999999999999999999999999999999999999999999999999999954 8999999999998
Q ss_pred ecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCc
Q 014173 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (429)
Q Consensus 182 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (429)
++.+.... . .
T Consensus 88 ~~~~~~~~----------------------------------~----------------------------~-------- 97 (196)
T 1l3k_A 88 RAVSREDS----------------------------------Q----------------------------R-------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc----------------------------------c----------------------------c--------
Confidence 87642110 0 0
Q ss_pred ceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHH
Q 014173 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAV 339 (429)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~ 339 (429)
.......++|||+|||..+++++|+++|++||.|..|.|+.+.. +. +|||||+|.+.++|.+|+
T Consensus 98 --------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 98 --------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp -------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred --------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 00013347999999999999999999999999999999998864 34 999999999999999999
Q ss_pred HHhCCceeCCeEEEEEeccCCCCCC
Q 014173 340 KDTEKYEIDGQVLEVVLAKPQTDKK 364 (429)
Q Consensus 340 ~~l~~~~~~g~~l~v~~a~~~~~~~ 364 (429)
.. +++.|+|+.|.|.++.++....
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HC-SCCEETTEECEEEECC------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhc
Confidence 86 8999999999999999876654
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.1e-33 Score=234.04 Aligned_cols=163 Identities=27% Similarity=0.509 Sum_probs=149.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+.++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998886
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 4211
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC-CCC-CcEEEEEeCCHHHHHHHHHHh
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~l 342 (429)
....++|||+|||..+++++|+++|++||.|..|.|+++. .+. +|||||+|.+.++|.+|+..|
T Consensus 86 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 0223689999999999999999999999999999998887 444 899999999999999999999
Q ss_pred CCceeCC--eEEEEEec
Q 014173 343 EKYEIDG--QVLEVVLA 357 (429)
Q Consensus 343 ~~~~~~g--~~l~v~~a 357 (429)
||..|.| ++|+|.||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 9999988 99999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.5e-32 Score=239.75 Aligned_cols=180 Identities=24% Similarity=0.439 Sum_probs=151.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+++|+++|+++|++||.|..|+++++..+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999997765
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
..... .. .....
T Consensus 107 ~~~~~---------------------------------------------------~~---~~~~~-------------- 118 (216)
T 2qfj_A 107 NIGQA---------------------------------------------------QP---IIDQL-------------- 118 (216)
T ss_dssp CCGGG---------------------------------------------------HH---HHHHH--------------
T ss_pred Ccccc---------------------------------------------------ch---hhhhh--------------
Confidence 32210 00 00000
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHh
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l 342 (429)
.......++|||+|||..+++++|+++|++||.|..|+|+.+.. +. +|||||+|.+.++|.+|+..|
T Consensus 119 -----------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 119 -----------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp -----------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 00113447999999999999999999999999999999998864 34 899999999999999999999
Q ss_pred CCceeCCeEEEEEeccCCCCC
Q 014173 343 EKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~~~~ 363 (429)
||..|+|+.|+|.|+.++..+
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSST
T ss_pred cCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999976443
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1e-32 Score=230.70 Aligned_cols=162 Identities=27% Similarity=0.508 Sum_probs=147.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+.+|+++|+++|+.||.|..|++++++.+|.++|||||+|.+.++|.+|++.|++..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999988763
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceee
Q 014173 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (429)
Q Consensus 186 ~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 265 (429)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 211
Q ss_pred ecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhC
Q 014173 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~ 343 (429)
....++|||+|||..+++++|+++|++||.|..|.++.+.. +. +|||||+|.+.++|.+|+..||
T Consensus 85 -------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 85 -------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp -------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred -------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 02235899999999999999999999999999999988763 33 8999999999999999999999
Q ss_pred CceeCCeE--EEEEec
Q 014173 344 KYEIDGQV--LEVVLA 357 (429)
Q Consensus 344 ~~~~~g~~--l~v~~a 357 (429)
|..|.|+. |+|.||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999964 888886
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-33 Score=231.22 Aligned_cols=164 Identities=18% Similarity=0.366 Sum_probs=146.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCc
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (429)
++|||+|||+++|+++|+++|++||.|.+|+++.++. ++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 789999999999999999999999999999999999887532
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeee
Q 014173 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (429)
Q Consensus 187 ~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 266 (429)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred cCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCC
Q 014173 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEK 344 (429)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~ 344 (429)
......++|||+|||..+++++|+++|++||.|..|.++.+..+ . +|||||+|.+.++|.+|+..|||
T Consensus 82 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 82 ----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp ----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 00023468999999999999999999999999999999887543 3 89999999999999999999999
Q ss_pred ceeCCeEEEEEeccC
Q 014173 345 YEIDGQVLEVVLAKP 359 (429)
Q Consensus 345 ~~~~g~~l~v~~a~~ 359 (429)
..|+|++|+|.||+.
T Consensus 152 ~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 152 QDLNGRPLRINWAAK 166 (166)
T ss_dssp CEETTEECEEEESCC
T ss_pred CccCCcEEEEEecCC
Confidence 999999999999863
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.6e-33 Score=232.73 Aligned_cols=163 Identities=25% Similarity=0.517 Sum_probs=145.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+.++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999899999999999999999999997 4567888888776654
Q ss_pred CcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCccee
Q 014173 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (429)
Q Consensus 185 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 264 (429)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 2100
Q ss_pred eecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHh
Q 014173 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l 342 (429)
....++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. +
T Consensus 84 --------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 84 --------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp --------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred --------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 02235899999999999999999999999999999998864 33 8999999999999999998 8
Q ss_pred CCceeCCeEEEEEeccCC
Q 014173 343 EKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 343 ~~~~~~g~~l~v~~a~~~ 360 (429)
++..|+|++|+|.||.++
T Consensus 149 ~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEECSSSSCEEEEECCCC
T ss_pred CCEEeCCeEEEEeecCCC
Confidence 999999999999999875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.5e-32 Score=228.57 Aligned_cols=165 Identities=25% Similarity=0.492 Sum_probs=144.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHHhcCCccC---CceEE
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~ 179 (429)
+.++|||+|||+++|+++|+++|++||.|..|+++++..++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998876 89999999999999999999999998765 45555
Q ss_pred EeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCC
Q 014173 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (429)
Q Consensus 180 v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~ 259 (429)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 554432110
Q ss_pred CcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHH
Q 014173 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (429)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A 338 (429)
.....++|||+|||..+|+++|+++|++||.|..|.|+++..+. +|||||+|.+.++|.+|
T Consensus 91 ------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp ------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 00234689999999999999999999999999999999888776 99999999999999999
Q ss_pred HHHhCCceeC---CeEEEEEecc
Q 014173 339 VKDTEKYEID---GQVLEVVLAK 358 (429)
Q Consensus 339 ~~~l~~~~~~---g~~l~v~~a~ 358 (429)
+..|||..+. +++|+|.||.
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhcCCcccCCCCCCeEEEecC
Confidence 9999998776 4999999983
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1e-30 Score=224.13 Aligned_cols=195 Identities=21% Similarity=0.283 Sum_probs=144.3
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLP-KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.+++|||+||| +.+|+++|+++|++||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 79999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcce
Q 014173 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (429)
Q Consensus 184 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (429)
+.... .|..... + .-+. ... ++... .... .|.....+
T Consensus 78 ~~~~~-----~p~~~~~--~-----~~~~-~~~----~~~~~-~~~~-----r~~~~~~~-------------------- 114 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG--L-----EDGS-CSY----KDFSE-SRNN-----RFSTPEQA-------------------- 114 (205)
T ss_dssp SCSCC-----CCCSCCB--C-----TTSC-BSE----EECTT-CTTC-----SCSSHHHH--------------------
T ss_pred cCCcc-----CCCcccc--c-----ccCC-ccc----cccCC-Cccc-----cccCcccc--------------------
Confidence 75432 1110000 0 0000 000 00000 0000 00000000
Q ss_pred eeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCe--eEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i--~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
.. .....+.++|||+|||+.+|+++|+++|++||.| ..|+|+.+..+++|||||+|.+.++|.+||..
T Consensus 115 ----~~------~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 115 ----AK------NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp ----TT------SCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred ----cc------cccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 00 0001345789999999999999999999999999 89999888744479999999999999999999
Q ss_pred hCCceeCCe----EEEEEec
Q 014173 342 TEKYEIDGQ----VLEVVLA 357 (429)
Q Consensus 342 l~~~~~~g~----~l~v~~a 357 (429)
|||..|.|+ ++.|.||
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999876 6777765
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.4e-30 Score=235.17 Aligned_cols=248 Identities=16% Similarity=0.228 Sum_probs=152.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
..+.++|||+|||+++|+++|+ ++|++||.|..|++.+ +++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred EEeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEE----ecChH-HHHHHHHHHhcc
Q 014173 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL----YYNNA-CADYSRQKMLNA 253 (429)
Q Consensus 179 ~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~----f~~~~-~a~~a~~~l~~~ 253 (429)
+|.++.................. ....-..... ...................+.+. -.... .+......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERD-RKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCCcccch-hhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99999765543222111111000 0000000000 00000000000000000000000 00000 000000000000
Q ss_pred cccc--CCCc----c-eeeecCCC---------C--CCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEec
Q 014173 254 NFKL--DGNT----P-TISWADPK---------S--TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (429)
Q Consensus 254 ~~~~--~~~~----~-~~~~~~~~---------~--~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~ 315 (429)
.... .+.. . ...+.... . ...........++|||+|||..+++++|+++|++||.|..|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000 0000 0 00000000 0 00000122356899999999999999999999999999999998
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEecc
Q 014173 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GQVLEVVLAK 358 (429)
Q Consensus 316 ~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~ 358 (429)
.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 241 ~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 655 589999999999999999999999999 9999999986
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.2e-31 Score=225.83 Aligned_cols=166 Identities=21% Similarity=0.353 Sum_probs=141.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+++|+++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+|+ .|++..|.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4557789999999999999999999999997765 33444456889999999999999999999 599999999999998
Q ss_pred ecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCc
Q 014173 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (429)
Q Consensus 182 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (429)
++.+...
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8864211
Q ss_pred ceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
......++|||+|||..+++++|+++|++||.|..+ ......+|||||+|.+.++|.+|+..
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 000234799999999999999999999999988877 22222389999999999999999999
Q ss_pred hCCceeCCeEEEEEeccCC
Q 014173 342 TEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 342 l~~~~~~g~~l~v~~a~~~ 360 (429)
|||..|+|+.|+|.|+.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999875
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.3e-30 Score=224.18 Aligned_cols=181 Identities=19% Similarity=0.381 Sum_probs=145.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 173 (429)
..++|||+|||+++|+++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 6676666 556899999999999999999 8999999
Q ss_pred CCceEEEeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 014173 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (429)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 253 (429)
.|++|.|.++.+.....-. . ....
T Consensus 76 ~g~~i~v~~~~~~~~~~~~----------------------------~--~~~~-------------------------- 99 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM----------------------------S--ENPS-------------------------- 99 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS----------------------------S--SCSS--------------------------
T ss_pred cCceEEEeCCCCCCCCCCC----------------------------c--CCCc--------------------------
Confidence 9999999988753211000 0 0000
Q ss_pred ccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC-CCC-CcEEEEEeCC
Q 014173 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-kg~afV~F~~ 331 (429)
....+ ..........++|||+|||..+++++|+++|++||.|..|.|+.+. .+. +|||||+|.+
T Consensus 100 -~~~~~-------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 100 -VYVPG-------------VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp -CCCTT-------------SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred -CCCCC-------------CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 00000 0000111455899999999999999999999999999999999886 344 8999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 332 ~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
.++|.+|+..|||..|+|+.|+|.++.++..
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999987643
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=8.8e-31 Score=219.97 Aligned_cols=157 Identities=19% Similarity=0.421 Sum_probs=139.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 173 (429)
+.++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 7787777 445899999999999999999 8999999
Q ss_pred CCceEEEeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 014173 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (429)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 253 (429)
.|++|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999987653210
Q ss_pred ccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC-CCC-CcEEEEEeCC
Q 014173 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-kg~afV~F~~ 331 (429)
....++|||+|||..+++++|+++|++||.|..|.|+.++ .+. +|||||+|.+
T Consensus 91 -------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 91 -------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp -------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred -------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 0113689999999999999999999999999999999886 444 8999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 332 RSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 332 ~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
.++|.+|+..|||..|+|++|+|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999984
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=9.6e-30 Score=223.33 Aligned_cols=195 Identities=24% Similarity=0.329 Sum_probs=148.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 103 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.++.++|||+|||+ .+++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999998874 7899999999999999999999999999999999
Q ss_pred ecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCc
Q 014173 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (429)
Q Consensus 182 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (429)
++.+..... +..... .....+ .|.. ... .
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~~~-----~~~~-------------~~~---~-- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGLTK-----DYGN-------------SPL---H-- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTTEE-----ECTT-------------CSS---C--
T ss_pred EecCccccC----cccccc------------------------cccccc-----cccc-------------Ccc---c--
Confidence 987543211 000000 000000 0000 000 0
Q ss_pred ceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHH
Q 014173 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (429)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (429)
...............+.++|||+|||..+++++|+++|++|| .|..|+|.+.. +|||||+|.+.++|.+|+.
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 135 ----RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp ----CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHH
T ss_pred ----ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHH
Confidence 000000000001124468999999999999999999999999 99999996532 4899999999999999999
Q ss_pred HhCCceeC-CeEEEEEeccCC
Q 014173 341 DTEKYEID-GQVLEVVLAKPQ 360 (429)
Q Consensus 341 ~l~~~~~~-g~~l~v~~a~~~ 360 (429)
.|||..|. |+.|+|.|++++
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSSC
T ss_pred HHCCCccCCCCeEEEEEecCC
Confidence 99999999 999999999864
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=7.2e-30 Score=219.44 Aligned_cols=193 Identities=24% Similarity=0.358 Sum_probs=147.3
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.+++|||+|||+ .+++++|+++|++||.|..|+++++. +|||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998764 789999999999999999999999999999999998
Q ss_pred CCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcce
Q 014173 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (429)
Q Consensus 184 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (429)
.+.... ++.... ......+. |.. . .. .+.
T Consensus 77 ~~~~~~----~~~~~~------------------------~~~~~~~~-----~~~-------------~--~~-~r~-- 105 (198)
T 1qm9_A 77 KHQNVQ----LPREGQ------------------------EDQGLTKD-----YGN-------------S--PL-HRF-- 105 (198)
T ss_dssp CCCSCC----CSSSSS------------------------SSSSCEEE-----SSC-------------C--CT-TSS--
T ss_pred cCCCcC----CCCcCC------------------------cccccccc-----ccC-------------C--ch-hhc--
Confidence 765321 110000 00000000 000 0 00 000
Q ss_pred eeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
..+. .........+.++|||+|||..+++++|+++|++|| .|..|+|.++. +|+|||+|.+.++|.+|+..|
T Consensus 106 ---~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 106 ---KKPG-SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp ---SSCC-CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHH
T ss_pred ---cCcc-ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHh
Confidence 0000 000011124468999999999999999999999999 99999997643 589999999999999999999
Q ss_pred CCceeC-CeEEEEEeccCC
Q 014173 343 EKYEID-GQVLEVVLAKPQ 360 (429)
Q Consensus 343 ~~~~~~-g~~l~v~~a~~~ 360 (429)
||..|+ |++|+|.|++++
T Consensus 179 ~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 179 HNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCCSSCCSCCEEEECCC
T ss_pred cCCccCCCCeEEEEeeccc
Confidence 999999 999999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2e-29 Score=225.77 Aligned_cols=159 Identities=28% Similarity=0.432 Sum_probs=142.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+++|+++|+++|++||.|..|++.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999954 478999999999999999999999999999999877
Q ss_pred cCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcc
Q 014173 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (429)
Q Consensus 183 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 262 (429)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 641
Q ss_pred eeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHH
Q 014173 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~ 341 (429)
.++|||+|||..+|+++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..
T Consensus 96 -------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 96 -------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp -------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred -------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 1479999999999999999999999999999999887666 99999999999999999999
Q ss_pred hC-CceeC---CeEEEEEeccCCCCC
Q 014173 342 TE-KYEID---GQVLEVVLAKPQTDK 363 (429)
Q Consensus 342 l~-~~~~~---g~~l~v~~a~~~~~~ 363 (429)
|| +..+. +++|.|.++.+....
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEESS
T ss_pred hcCCeEEecCCCceEEEeeccccCcc
Confidence 95 44544 999999999876443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=2e-26 Score=209.42 Aligned_cols=165 Identities=20% Similarity=0.387 Sum_probs=152.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
.+..++|||+|||+.+|+++|+++|++||.|..|+++.+..+|.++|||||+|.+.++|.+|+..|++..+.|++|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCc---------ccccccCCCCCC-CHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhc
Q 014173 183 SETK---------NRLFIGNVPKNW-TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (429)
Q Consensus 183 ~~~~---------~~l~v~nl~~~~-t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 252 (429)
+.+. ++|||+|||..+ ++++|+.+|+.||. |..+.++.++ .+.++++|||.|.+.++|..|+..|++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8754 579999999996 99999999999998 9999999974 578899999999999999999999977
Q ss_pred cccccCCCcceeeecCCCCC
Q 014173 253 ANFKLDGNTPTISWADPKST 272 (429)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~ 272 (429)
. .+.|+.+.|.++.+...
T Consensus 249 ~--~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 L--SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp C--EETTEECEEEECCSSSC
T ss_pred C--ccCCeEEEEEEecCCCc
Confidence 6 56899999999988755
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=5.3e-26 Score=207.53 Aligned_cols=162 Identities=23% Similarity=0.387 Sum_probs=141.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
...++|||+|||+.+++++|+++|++|| .|..|+++.+.. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999998876 88999999999999999999999999999999999998
Q ss_pred cCCc-------------ccccccCCCCC-CCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHH
Q 014173 183 SETK-------------NRLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (429)
Q Consensus 183 ~~~~-------------~~l~v~nl~~~-~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~ 248 (429)
+.+. ++|||+|||.. +++++|+.+|+.||. |..+.++.++..++.+++||||.|.+.++|.+|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 7643 67999999999 999999999999998 9999999875435889999999999999999999
Q ss_pred HHhccccccCCCcceeeecCCC
Q 014173 249 KMLNANFKLDGNTPTISWADPK 270 (429)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~ 270 (429)
.|++. .+.|+.+.|.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 88775 578999999998875
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=8.3e-22 Score=162.35 Aligned_cols=135 Identities=21% Similarity=0.349 Sum_probs=107.9
Q ss_pred CCccEEEEEecChHHHHHHHHHHhccc-----cccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHH
Q 014173 228 RNRGFSFVLYYNNACADYSRQKMLNAN-----FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302 (429)
Q Consensus 228 ~~~g~~fv~f~~~~~a~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~ 302 (429)
.++||+||.|.+.+.|.+++..++... ....+.......................++|||+|||+.+++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 589999999999999999998877532 222233333333333222222223355789999999999999999999
Q ss_pred HhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 303 FQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 303 F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..|||..|+|++|+|.++.++..
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999864 33 99999999999999999999999999999999999987644
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.8e-22 Score=156.36 Aligned_cols=97 Identities=23% Similarity=0.440 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|++..|.|++|+|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999986 558999999999999999999999999999999999997
Q ss_pred CCc--------------ccccccCCCCCCCHHH
Q 014173 184 ETK--------------NRLFIGNVPKNWTEDE 202 (429)
Q Consensus 184 ~~~--------------~~l~v~nl~~~~t~~~ 202 (429)
.++ .+|||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 653 4699999999998763
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=9.2e-22 Score=147.57 Aligned_cols=82 Identities=32% Similarity=0.605 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
-.+++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 014173 184 ET 185 (429)
Q Consensus 184 ~~ 185 (429)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.5e-21 Score=159.13 Aligned_cols=139 Identities=15% Similarity=0.206 Sum_probs=111.9
Q ss_pred CCceeEEEEEecCHHHHHHHHHHh-cCCccCCceEEEeecCCcccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC
Q 014173 145 GESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (429)
Q Consensus 145 ~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~~v~~~~~~~d~ 223 (429)
...+|+++|+|.+.+.|.+|++.+ ++..+.| .|.+.++........ ..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~-----------------------------~~- 58 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE-----------------------------GS- 58 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEEC-----------------------------SS-
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccc-----------------------------cc-
Confidence 467899999999999999999999 9999999 999987764221000 00
Q ss_pred CCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHH
Q 014173 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (429)
Q Consensus 224 ~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F 303 (429)
. ..............++|||+|||+.+++++|+++|
T Consensus 59 -~-------------------------------------------~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 94 (150)
T 2i2y_A 59 -H-------------------------------------------HHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAF 94 (150)
T ss_dssp -S-------------------------------------------SCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHH
T ss_pred -c-------------------------------------------cccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0 00000001112445899999999999999999999
Q ss_pred hccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 304 QRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 304 ~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
++||.|..|+|+.+ ++|||||+|.+.++|.+|+..|||..|+|++|+|.|+.++.
T Consensus 95 ~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 95 GYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999887 35999999999999999999999999999999999998753
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=140.65 Aligned_cols=80 Identities=24% Similarity=0.470 Sum_probs=74.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+|+++|+++|++||.|..|+|++++.+ . +|||||+|.+.++|.+|+..|||..|+|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999988754 3 899999999999999999999999999999999999
Q ss_pred cC
Q 014173 358 KP 359 (429)
Q Consensus 358 ~~ 359 (429)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=141.57 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+++.++|||+|||+.+++++|+++|++||.|..|+|+.++.|++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=8.9e-21 Score=139.95 Aligned_cols=83 Identities=34% Similarity=0.551 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc-CCccCCceEEEeec
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKGKTIRCSLS 183 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~ 183 (429)
+.+|||+|||+++|+++|+++|++|| .|.+|+|++++.|+.++|||||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998774 55799999999999
Q ss_pred CCccc
Q 014173 184 ETKNR 188 (429)
Q Consensus 184 ~~~~~ 188 (429)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=138.23 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCC--eEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC----ccCCceEE
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTIR 179 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~--i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~l~ 179 (429)
=.||||+|||+.+|+++|+++|++||. |.+|++++++.||+++|||||+|.+.++|.+|++.|++. .|.|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 679999999999999999999999999999999999997 48999999
Q ss_pred EeecCC
Q 014173 180 CSLSET 185 (429)
Q Consensus 180 v~~~~~ 185 (429)
|.+++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999874
No 29
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=2.8e-20 Score=176.93 Aligned_cols=83 Identities=25% Similarity=0.424 Sum_probs=76.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+|+++|+.+|++||.|+.|.|+.+..+ . +|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44579999999999999999999999999999999988643 3 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87544
No 30
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.1e-19 Score=149.05 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=76.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999887543 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87544
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=5.1e-20 Score=135.85 Aligned_cols=81 Identities=20% Similarity=0.427 Sum_probs=73.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccC-CeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEec
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE-KYEIDGQVLEVVLA 357 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~-~~~~~g~~l~v~~a 357 (429)
+++|||+|||+.+|+++|+++|++|| .|.+|+|++++.+. ||||||+|.+.++|.+|+..++ +..|+|++|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999887643 9999999999999999999874 56799999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 32
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=8.2e-21 Score=165.09 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=73.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccC--CeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
..++|||+|||+.+|+++|+++|++|| .|+.|+|+.++.+ . ||||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 346899999999999999999999999 9999999988644 4 99999999999999999999999999999999999
Q ss_pred ccCC
Q 014173 357 AKPQ 360 (429)
Q Consensus 357 a~~~ 360 (429)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 33
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=133.76 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=78.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+.+|||||+|.+.++|.+|+..||+..|.|+.|+|.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 45689999999999999999999999999999999998776799999999999999999999999999999999999998
Q ss_pred CCCCC
Q 014173 360 QTDKK 364 (429)
Q Consensus 360 ~~~~~ 364 (429)
+..++
T Consensus 93 ~~~~~ 97 (103)
T 2cqi_A 93 PSSQK 97 (103)
T ss_dssp TTCCC
T ss_pred Ccccc
Confidence 65443
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.1e-19 Score=129.76 Aligned_cols=81 Identities=27% Similarity=0.540 Sum_probs=77.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
+++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|++..|.|++|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999998999999999999999999999999999999999999999986
Q ss_pred c
Q 014173 186 K 186 (429)
Q Consensus 186 ~ 186 (429)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=1.1e-19 Score=140.90 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=95.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+.+|+++|+++|++||.|..|+++.+ +.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 55699999999999999999999999999999999999
Q ss_pred cCCcccccccCCCCCCCHHHHHHHHHhhCC
Q 014173 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212 (429)
Q Consensus 183 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 212 (429)
+.+.... .+++...++++|..+|+++|.
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9876543 778888899999999999994
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=132.94 Aligned_cols=85 Identities=32% Similarity=0.643 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98654
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=2.2e-19 Score=131.18 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+.+.++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45779999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 014173 183 SE 184 (429)
Q Consensus 183 ~~ 184 (429)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 38
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=131.38 Aligned_cols=83 Identities=31% Similarity=0.525 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.+.++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.4e-19 Score=140.01 Aligned_cols=82 Identities=15% Similarity=0.389 Sum_probs=75.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
..+|||+|||+.+++++|+++|++||.|.+|+|++++.++||||||+|.+.++|.+||..|++..|+|+.|+|.++.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 46899999999999999999999999999999998876669999999999999999999999999999999999998765
Q ss_pred CC
Q 014173 362 DK 363 (429)
Q Consensus 362 ~~ 363 (429)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=5e-20 Score=140.76 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=76.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999988764 3 999999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=135.52 Aligned_cols=86 Identities=31% Similarity=0.607 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.++..++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998653
No 42
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=131.94 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=78.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+.+|||||+|.+.++|.+|+..||+..|+|+.|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 55689999999999999999999999999999999988776789999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 360 QTDK 363 (429)
Q Consensus 360 ~~~~ 363 (429)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cq3_A 93 RVMT 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=134.46 Aligned_cols=85 Identities=29% Similarity=0.514 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=2.2e-19 Score=134.35 Aligned_cols=85 Identities=32% Similarity=0.666 Sum_probs=80.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
++++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred Ccccc
Q 014173 185 TKNRL 189 (429)
Q Consensus 185 ~~~~l 189 (429)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87654
No 45
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=133.44 Aligned_cols=86 Identities=30% Similarity=0.444 Sum_probs=81.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
..+.++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCccc
Q 014173 183 SETKNR 188 (429)
Q Consensus 183 ~~~~~~ 188 (429)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987644
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.3e-19 Score=131.33 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=76.7
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
...++|||+|||+.+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+|+..|||..|+|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 455799999999999999999 99999999999999998877 8999999999999999999999999999999999
Q ss_pred eccCCCC
Q 014173 356 LAKPQTD 362 (429)
Q Consensus 356 ~a~~~~~ 362 (429)
++++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987644
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=132.39 Aligned_cols=84 Identities=32% Similarity=0.464 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+.+.++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+..|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 014173 182 LSET 185 (429)
Q Consensus 182 ~~~~ 185 (429)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=1.2e-19 Score=133.83 Aligned_cols=80 Identities=31% Similarity=0.559 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
.+|||+|||+++|+++|+++|++|| .|..|+++.++.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 014173 185 TK 186 (429)
Q Consensus 185 ~~ 186 (429)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 49
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.1e-19 Score=132.10 Aligned_cols=85 Identities=26% Similarity=0.619 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++ |++..|.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999997 99999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998654
No 50
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=2e-18 Score=133.85 Aligned_cols=85 Identities=19% Similarity=0.350 Sum_probs=77.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999998863 34 899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014173 358 KPQTDKK 364 (429)
Q Consensus 358 ~~~~~~~ 364 (429)
.++..+.
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 9875543
No 51
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-18 Score=133.43 Aligned_cols=82 Identities=27% Similarity=0.516 Sum_probs=75.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|++ .|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 55689999999999999999999999999999999998753 3 89999999999999999999998 899999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.+...
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 86544
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=132.61 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.1
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCC--eeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCc----eeCCeEE
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKY----EIDGQVL 352 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~--i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~----~~~g~~l 352 (429)
.-.+|||+|||+.+|+++|+++|++||. |.+|+|++++.+. ||||||+|.+.++|.+|++.||+. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 6799999987643 999999999999999999999986 5899999
Q ss_pred EEEeccC
Q 014173 353 EVVLAKP 359 (429)
Q Consensus 353 ~v~~a~~ 359 (429)
+|.||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=131.83 Aligned_cols=84 Identities=26% Similarity=0.596 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+. +++++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98653
No 54
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=8.2e-19 Score=132.02 Aligned_cols=85 Identities=32% Similarity=0.478 Sum_probs=80.0
Q ss_pred cCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 014173 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (429)
Q Consensus 100 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 171 (429)
...+...++|||+|||+++++++|+++|++||.|.. |+++.++.+++++|||||+|.+.++|.+|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccCCceEEEeecC
Q 014173 172 ELKGKTIRCSLSE 184 (429)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (429)
.|.|++|+|.+++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 55
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=132.00 Aligned_cols=82 Identities=33% Similarity=0.585 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
++..++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 014173 183 SE 184 (429)
Q Consensus 183 ~~ 184 (429)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 56
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=130.32 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=77.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4568999999999999999999999999999999998873 33 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987553
No 57
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=130.03 Aligned_cols=83 Identities=20% Similarity=0.482 Sum_probs=76.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34579999999999999999999999999999999988753 3 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=134.02 Aligned_cols=86 Identities=33% Similarity=0.488 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998764
No 59
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=131.94 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=73.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|++||.|..|+|++++ |||||+|.+.++|.+|+..|+ +..|.|++|+|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k----GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456899999999999999999999999999999999874 999999999999999999886 47899999999999
Q ss_pred cCCCCCC
Q 014173 358 KPQTDKK 364 (429)
Q Consensus 358 ~~~~~~~ 364 (429)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8876544
No 60
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.7e-19 Score=142.28 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=79.3
Q ss_pred EEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCCCchhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeE
Q 014173 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK 311 (429)
Q Consensus 232 ~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~ 311 (429)
+.|+.+.+...+..|+..+++.... ++ ....+..+ +......++|||+|||..+++++|+++|++||.|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~--g~-~~~~~~~~------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQM--GR-GSMSYGRP------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp --------------------------------CCSCCS------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCC--CC-CCCCcCCC------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 5666777777777788777654322 11 11222222 122255689999999999999999999999999999
Q ss_pred EEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q 014173 312 VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 312 v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (429)
|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+++...+
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999988643 3 999999999999999999999999999999999999876443
No 61
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=6.2e-19 Score=145.80 Aligned_cols=85 Identities=25% Similarity=0.437 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|++..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.++
T Consensus 148 ~a~~~ 152 (165)
T 1rk8_A 148 WCFVK 152 (165)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 98754
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=134.21 Aligned_cols=85 Identities=24% Similarity=0.381 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|++|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98643
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=130.99 Aligned_cols=83 Identities=19% Similarity=0.474 Sum_probs=77.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999999888665 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 64
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=129.02 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=71.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~--~~g~~l~v~~a 357 (429)
.++++|||+|||..+|+++|+++|++||.|.+|.|++.+ |||||+|.+.++|.+|+..|++.. |.|++|+|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k----g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK----RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 456899999999999999999999999999999998654 999999999999999999999874 88999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8764
No 65
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1.2e-18 Score=135.15 Aligned_cols=85 Identities=34% Similarity=0.576 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.6e-19 Score=133.54 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=133.91 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=76.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|+|+.|+|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 445799999999999999999999999999999999988555 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
++..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7644
No 68
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=131.72 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=77.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 4568999999999999999999999999999999998874 33 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 886543
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=8.1e-19 Score=135.99 Aligned_cols=84 Identities=31% Similarity=0.563 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
+..++|||+|||+++++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8654
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=132.97 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=76.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 446899999999999999999999999999999999887766 9999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.7e-19 Score=135.76 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC-ce
Q 014173 105 NGSEVFIGGLPK------DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KT 177 (429)
Q Consensus 105 ~~~~l~v~nLp~------~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~ 177 (429)
..++|||+|||+ ++++++|+++|++||.|..|+|+.++.||+++|||||+|.+.++|.+|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeecCCc
Q 014173 178 IRCSLSETK 186 (429)
Q Consensus 178 l~v~~~~~~ 186 (429)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 72
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=131.30 Aligned_cols=84 Identities=25% Similarity=0.472 Sum_probs=77.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45689999999999999999999999999999999988654 3 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 976544
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.3e-19 Score=133.54 Aligned_cols=86 Identities=30% Similarity=0.593 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
...+.++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987653
No 74
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.1e-19 Score=155.11 Aligned_cols=81 Identities=30% Similarity=0.547 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
..++|||+|||+.+|+++|+++|++|| .|..|+|+.++.|++++|||||+|.+.++|.+||+.|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 014173 183 SET 185 (429)
Q Consensus 183 ~~~ 185 (429)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 875
No 75
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.4e-19 Score=132.10 Aligned_cols=84 Identities=27% Similarity=0.467 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCC---CCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.+.. |+.++|||||+|.+.++|.+|+..|++..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred eecCCcc
Q 014173 181 SLSETKN 187 (429)
Q Consensus 181 ~~~~~~~ 187 (429)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998654
No 76
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=3.7e-18 Score=129.37 Aligned_cols=79 Identities=32% Similarity=0.683 Sum_probs=73.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
.+.++|||+|||..+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|+|.|+.+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4568999999999999999999999999999999873 6999999999999999999999999999999999988
Q ss_pred CCCCC
Q 014173 360 QTDKK 364 (429)
Q Consensus 360 ~~~~~ 364 (429)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 77
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=132.60 Aligned_cols=84 Identities=30% Similarity=0.546 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
.+.++|||+|||+.+++++|+++|++||.|..| +|+.++.++.++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98653
No 78
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=129.44 Aligned_cols=83 Identities=34% Similarity=0.554 Sum_probs=76.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. |++..|+|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999886533 8999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 976543
No 79
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=129.72 Aligned_cols=83 Identities=13% Similarity=0.271 Sum_probs=75.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEE-EecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v-~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
...++|||+|||..+++++|+++|++||.|..| .|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345799999999999999999999999999999 9998853 33 89999999999999999999999999999999999
Q ss_pred ccCCCC
Q 014173 357 AKPQTD 362 (429)
Q Consensus 357 a~~~~~ 362 (429)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 80
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=8.8e-19 Score=138.06 Aligned_cols=87 Identities=34% Similarity=0.489 Sum_probs=81.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
..+.+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcc
Q 014173 181 SLSETKN 187 (429)
Q Consensus 181 ~~~~~~~ 187 (429)
.++.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998653
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=134.11 Aligned_cols=86 Identities=30% Similarity=0.494 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc------CCccCC
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH------SKELKG 175 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~------~~~~~g 175 (429)
.+...++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceEEEeecCCcc
Q 014173 176 KTIRCSLSETKN 187 (429)
Q Consensus 176 ~~l~v~~~~~~~ 187 (429)
++|+|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998653
No 82
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.9e-19 Score=133.71 Aligned_cols=85 Identities=32% Similarity=0.576 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+.+.++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98654
No 83
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=130.69 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8654
No 84
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=1.9e-18 Score=126.73 Aligned_cols=81 Identities=27% Similarity=0.569 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999 568889999999998
Q ss_pred ec
Q 014173 182 LS 183 (429)
Q Consensus 182 ~~ 183 (429)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=131.58 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=77.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ .+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45689999999999999999999999999999999988 444 8999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 014173 359 PQTDKK 364 (429)
Q Consensus 359 ~~~~~~ 364 (429)
++..+.
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 86
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=130.97 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=77.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999886543 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876543
No 87
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=3e-18 Score=130.54 Aligned_cols=83 Identities=33% Similarity=0.517 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC---ceEEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG---KTIRC 180 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g---~~l~v 180 (429)
...++|||+|||+.+++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..|++..|.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999997 69999999999999999999999999999998 99999
Q ss_pred eecCCcc
Q 014173 181 SLSETKN 187 (429)
Q Consensus 181 ~~~~~~~ 187 (429)
.++.++.
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9998653
No 88
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=130.67 Aligned_cols=83 Identities=27% Similarity=0.455 Sum_probs=76.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45689999999999999999999999999999999988753 3 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.+...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87544
No 89
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=127.14 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=72.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..||+..|+|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4457999999999999999999999999999999988753 34 899999999999999999999999999999999999
Q ss_pred cCC
Q 014173 358 KPQ 360 (429)
Q Consensus 358 ~~~ 360 (429)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 90
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=2.1e-18 Score=125.28 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=73.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
.+|||+|||..+++++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999887543 3 899999999999999999999999999999999999876
Q ss_pred C
Q 014173 361 T 361 (429)
Q Consensus 361 ~ 361 (429)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=132.38 Aligned_cols=86 Identities=30% Similarity=0.558 Sum_probs=80.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeec-CCCCCceeEEEEEecCHHHHHHHHHHh-cCCccCCceEEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRC 180 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v 180 (429)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+ ..++.++|||||+|.+.++|.+|+..| ++..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346689999999999999999999999999999999998 778999999999999999999999999 999999999999
Q ss_pred eecCCccc
Q 014173 181 SLSETKNR 188 (429)
Q Consensus 181 ~~~~~~~~ 188 (429)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987644
No 92
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-18 Score=129.90 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=74.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|..+.. .+|||||+|.+.++|.+|+..||+..|+|+.|+|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 4568999999999999999999999999999999976542 379999999999999999999999999999999999987
Q ss_pred CC
Q 014173 360 QT 361 (429)
Q Consensus 360 ~~ 361 (429)
+.
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 93
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=131.91 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+++|+++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3558899999999999999999999999999999999987 9999999999999999999997 8999999999999987
Q ss_pred CC
Q 014173 184 ET 185 (429)
Q Consensus 184 ~~ 185 (429)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2e-18 Score=122.24 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=69.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
+..|||+||++.+|+++|+++|.+||.|.+++|... ||||||+|.+.++|.+|++.||+..+.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN----QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 468999999999999999999999999999999774 4999999999999999999999999999999999995
No 95
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-18 Score=130.56 Aligned_cols=85 Identities=19% Similarity=0.382 Sum_probs=77.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE------KYEIDGQV 351 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~------~~~~~g~~ 351 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456899999999999999999999999999999999887543 8999999999999999999999 99999999
Q ss_pred EEEEeccCCCCCC
Q 014173 352 LEVVLAKPQTDKK 364 (429)
Q Consensus 352 l~v~~a~~~~~~~ 364 (429)
|+|.++.++....
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999999865443
No 96
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.1e-18 Score=129.73 Aligned_cols=84 Identities=27% Similarity=0.502 Sum_probs=76.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCC-C-CCC-CcEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-K-SGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~-~-~~~-kg~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~v~ 355 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+ + .+. +|||||+|.+.++|.+|+..| |+..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 55689999999999999999999999999999999988 3 333 899999999999999999999 9999999999999
Q ss_pred eccCCCCC
Q 014173 356 LAKPQTDK 363 (429)
Q Consensus 356 ~a~~~~~~ 363 (429)
|+.++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99986543
No 97
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=3.6e-18 Score=127.66 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=75.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
+++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 479999999999999999999999999999999988653 3 89999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 98
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.7e-18 Score=133.02 Aligned_cols=85 Identities=22% Similarity=0.425 Sum_probs=77.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|+|+.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4558999999999999999999999999999999988874 34 899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 014173 358 KPQTDKK 364 (429)
Q Consensus 358 ~~~~~~~ 364 (429)
.++..+.
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 9875543
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-18 Score=126.66 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=73.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~a 357 (429)
.+.++|||+|||+.+++++|+++|++||.|..|.|++++ |||||+|.+.++|.+|+..|+ +..|.|++|+|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK----NQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC----CEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 456899999999999999999999999999999998764 999999999999999999774 67899999999999
Q ss_pred cCCCCCC
Q 014173 358 KPQTDKK 364 (429)
Q Consensus 358 ~~~~~~~ 364 (429)
+++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 9766543
No 100
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=130.90 Aligned_cols=84 Identities=19% Similarity=0.420 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE-EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce----
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF-EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT---- 177 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~---- 177 (429)
....++|||+|||+.+++++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecCCc
Q 014173 178 IRCSLSETK 186 (429)
Q Consensus 178 l~v~~~~~~ 186 (429)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998764
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=2.6e-18 Score=125.45 Aligned_cols=79 Identities=23% Similarity=0.469 Sum_probs=73.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998875443 899999999999999999999999999999999998
Q ss_pred c
Q 014173 358 K 358 (429)
Q Consensus 358 ~ 358 (429)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 102
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=3e-18 Score=130.48 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=78.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG---QVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g---~~l~v~ 355 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..|.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 456899999999999999999999999999999999888666 8999999999999999999999999988 999999
Q ss_pred eccCCCCCC
Q 014173 356 LAKPQTDKK 364 (429)
Q Consensus 356 ~a~~~~~~~ 364 (429)
|+.++..+.
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876543
No 103
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=129.42 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=72.0
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEEe
Q 014173 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~--~~~g~~l~v~~ 356 (429)
.+.++|||+|||+ .+++++|+++|++||.|.+|.|++++ |||||+|.+.++|.+|+..|++. .|.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3568999999999 99999999999999999999998775 89999999999999999998864 59999999999
Q ss_pred ccCCCC
Q 014173 357 AKPQTD 362 (429)
Q Consensus 357 a~~~~~ 362 (429)
++....
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986544
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=1.9e-18 Score=127.42 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+.+++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|+ .|++..|.|++|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999989999999999999999999999 9999999999999999876
Q ss_pred c
Q 014173 186 K 186 (429)
Q Consensus 186 ~ 186 (429)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=128.75 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+.+++++|+++|++||.|..|+|+.++. ++++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999986 99999999999999999999999999999999999998
Q ss_pred cCC
Q 014173 183 SET 185 (429)
Q Consensus 183 ~~~ 185 (429)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 106
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=129.09 Aligned_cols=81 Identities=23% Similarity=0.451 Sum_probs=74.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC--CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
...++|||+|||..+++++|+++|++|| |..|.|+.++. +. +|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 99999998875 34 999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 014173 357 AKPQTD 362 (429)
Q Consensus 357 a~~~~~ 362 (429)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 107
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-19 Score=129.07 Aligned_cols=82 Identities=28% Similarity=0.556 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+.+.++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999998876
Q ss_pred cC
Q 014173 183 SE 184 (429)
Q Consensus 183 ~~ 184 (429)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 108
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=136.55 Aligned_cols=83 Identities=25% Similarity=0.482 Sum_probs=76.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999998887543 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 120 ~~~~~ 124 (139)
T 1u6f_A 120 ASGHQ 124 (139)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87644
No 109
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=130.00 Aligned_cols=84 Identities=30% Similarity=0.515 Sum_probs=76.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC--C--C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--G--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~--~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+.. + . +|||||+|.+.++|.+|+..||+..|+|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457999999999999999999999999999999987765 2 3 899999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 014173 355 VLAKPQTDK 363 (429)
Q Consensus 355 ~~a~~~~~~ 363 (429)
.++.++..+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 110
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=130.13 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCceEE
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (429)
.+++.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.|++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999864 78999999999999999998864 689999999
Q ss_pred EeecCCcc
Q 014173 180 CSLSETKN 187 (429)
Q Consensus 180 v~~~~~~~ 187 (429)
|.++.++.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99998653
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2e-18 Score=136.19 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=76.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|+|+.|+|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45689999999999999999999999999999999988643 3 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 87644
No 112
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=1.7e-18 Score=133.06 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+.+|++||.|..|+++.+..++.++|||||+|.+.++|.+|+..|++..|.|++|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 113
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=1.5e-18 Score=132.42 Aligned_cols=85 Identities=29% Similarity=0.592 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc---CCceEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIR 179 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~l~ 179 (429)
+...++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EeecCCcc
Q 014173 180 CSLSETKN 187 (429)
Q Consensus 180 v~~~~~~~ 187 (429)
|.++.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998654
No 114
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=128.28 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=72.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~--~~~g~~l~v~~a 357 (429)
.+.++|||+|||+.+++++|+++|++||.|..|.|++++ |||||+|.+.++|.+|+..|++. .|.|++|+|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK----RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 456899999999999999999999999999999998764 99999999999999999988754 599999999999
Q ss_pred cCCCCCC
Q 014173 358 KPQTDKK 364 (429)
Q Consensus 358 ~~~~~~~ 364 (429)
..+....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 8765543
No 115
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=133.19 Aligned_cols=84 Identities=32% Similarity=0.601 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+++|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98653
No 116
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=129.88 Aligned_cols=84 Identities=25% Similarity=0.530 Sum_probs=77.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45689999999999999999999999999999999988643 3 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 117
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=3e-18 Score=129.91 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.+.++|||+|||+.+++++|+++|++|| |..|+|+.++.+++++|||||+|.+.++|.+|+ .|++..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999997 999999999999999999999999999999999 89999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 118
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=126.50 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc--cCCceEEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRC 180 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v 180 (429)
.+++++|||+|||+.+|+++|+++|++||.|.+|++++ .||||||+|.+.++|.+|+..|++.. |.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35778999999999999999999999999999999975 37899999999999999999999876 78999999
Q ss_pred eecCCc
Q 014173 181 SLSETK 186 (429)
Q Consensus 181 ~~~~~~ 186 (429)
.+++++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999864
No 119
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=3.9e-18 Score=131.04 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=76.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 55689999999999999999999999999999999887643 3 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87654
No 120
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=126.06 Aligned_cols=79 Identities=23% Similarity=0.448 Sum_probs=73.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45689999999999999999999999999999999988764 3 899999999999999999999999999999999998
Q ss_pred c
Q 014173 358 K 358 (429)
Q Consensus 358 ~ 358 (429)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 121
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=130.88 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCCceEE
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIR 179 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~l~ 179 (429)
.+...++|||+|||+.+|+++|+++|++ ||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|++.. |.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeecCCcc
Q 014173 180 CSLSETKN 187 (429)
Q Consensus 180 v~~~~~~~ 187 (429)
|.++.++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99987653
No 122
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=132.09 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=76.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+.+|||||+|.+.++|.+|+..|||..|+|+.|+|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 55689999999999999999999999999999999988766699999999999999999999999999999999999987
Q ss_pred C
Q 014173 360 Q 360 (429)
Q Consensus 360 ~ 360 (429)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 123
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=127.23 Aligned_cols=82 Identities=20% Similarity=0.438 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCC-ceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..++|||+|||+++|+++|+++|++||.|..|+++.+..++. ++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999887666 8999999999999999999999999999999999998
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 124
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=128.26 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=75.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 456899999999999999999999999999999999888766 9999999999999999999999999999999999987
Q ss_pred C
Q 014173 359 P 359 (429)
Q Consensus 359 ~ 359 (429)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=140.54 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++.+|+++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 126
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=4.2e-18 Score=130.21 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecC
Q 014173 182 LSE 184 (429)
Q Consensus 182 ~~~ 184 (429)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 127
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.7e-18 Score=134.92 Aligned_cols=82 Identities=30% Similarity=0.545 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
.+..++|||+|||+++++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 014173 183 SE 184 (429)
Q Consensus 183 ~~ 184 (429)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 128
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=4.5e-18 Score=126.19 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+++++|+++|++||.|..|+++++ +++++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98653
No 129
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=126.81 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=74.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|+|++|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 55689999999999999999999999999999999888754 3 899999999999999999999999999999999998
Q ss_pred cC
Q 014173 358 KP 359 (429)
Q Consensus 358 ~~ 359 (429)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 130
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=130.64 Aligned_cols=84 Identities=12% Similarity=0.320 Sum_probs=77.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhc-cCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEEe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~-~~g~~l~v~~ 356 (429)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|++.. |+|+.|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45589999999999999999999999 9999999999888555 9999999999999999999999999 9999999999
Q ss_pred ccCCCCC
Q 014173 357 AKPQTDK 363 (429)
Q Consensus 357 a~~~~~~ 363 (429)
+.++..+
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9876543
No 131
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=132.85 Aligned_cols=85 Identities=29% Similarity=0.493 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 174 (429)
....++|||+|||+.+|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999998 6999999889999999999999999999999999999999
Q ss_pred CceEEEeecCCcc
Q 014173 175 GKTIRCSLSETKN 187 (429)
Q Consensus 175 g~~l~v~~~~~~~ 187 (429)
|++|+|.++.++.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998654
No 132
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=5.6e-18 Score=129.25 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=76.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEI---DGQVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~---~g~~l~v 354 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 45689999999999999999999999999999999998753 3 89999999999999999999999987 8999999
Q ss_pred EeccCCCC
Q 014173 355 VLAKPQTD 362 (429)
Q Consensus 355 ~~a~~~~~ 362 (429)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99987654
No 133
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.2e-18 Score=130.08 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
+..++|||+|||+.+|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 35589999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred C
Q 014173 184 E 184 (429)
Q Consensus 184 ~ 184 (429)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=130.61 Aligned_cols=84 Identities=29% Similarity=0.457 Sum_probs=77.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCc
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (429)
++|||+|||+++|+++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|+..|++..+.|++|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6899999999999999999999999999999999998653
Q ss_pred ----------------ccccccCCC
Q 014173 187 ----------------NRLFIGNVP 195 (429)
Q Consensus 187 ----------------~~l~v~nl~ 195 (429)
.+|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 467888876
No 135
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=2.6e-18 Score=142.04 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=75.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+ . +|||||+|.+.++|.+||..|||..|.|+.|+|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999987644 3 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 876543
No 136
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=2.7e-18 Score=127.36 Aligned_cols=83 Identities=16% Similarity=0.319 Sum_probs=75.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|.++....+|||||+|.+.++|.+|+..||+..|+|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45689999999999999999999999999999999875333389999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 137
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=130.62 Aligned_cols=83 Identities=31% Similarity=0.670 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34789999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred Ccc
Q 014173 185 TKN 187 (429)
Q Consensus 185 ~~~ 187 (429)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 138
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=8e-18 Score=127.58 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=74.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++|| |..|.|+.++.+ . +|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999997 999999988754 3 899999999999999999 89999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87644
No 139
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=131.35 Aligned_cols=84 Identities=26% Similarity=0.524 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+.. ++..|.|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98654
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=130.55 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=73.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~--~~~~g~~l~v~~a 357 (429)
.+.++|||+|||+.+++++|+++|++||.|..|.|++++ |||||+|.+.++|.+|+..|++ ..|.|++|+|.|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k----G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK----NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG----TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 456899999999999999999999999999999998764 9999999999999999998874 6899999999999
Q ss_pred cCCCCCC
Q 014173 358 KPQTDKK 364 (429)
Q Consensus 358 ~~~~~~~ 364 (429)
+++....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8876554
No 141
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=130.26 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=76.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999887754 3 899999999999999999999999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 142
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.4e-18 Score=121.84 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..|.|++|+|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999954 69999999999999999999999999999999999884
No 143
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=129.73 Aligned_cols=82 Identities=24% Similarity=0.488 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
.+.++|||+|||+.+|+++|+++|++|| |..|+|+.++.+ ++++|||||+|.+.++|.+|+ .|++..|.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999887 999999999999999999999 9999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98653
No 144
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=129.80 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+++++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45688999999999999999999999999998888988889999999999999999999999999999999999999998
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 145
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=128.49 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC--ccCCceEEE
Q 014173 104 PNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRC 180 (429)
Q Consensus 104 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v 180 (429)
.+.++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..|++. .|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999764 579999999999999999998865 499999999
Q ss_pred eecCCcccc
Q 014173 181 SLSETKNRL 189 (429)
Q Consensus 181 ~~~~~~~~l 189 (429)
.+++....+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876654
No 146
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=124.80 Aligned_cols=81 Identities=19% Similarity=0.371 Sum_probs=74.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC---CCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG---KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
..++|||+|||..+++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|.+|+..|||..|+|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3479999999999999999999999999999999887743 3899999999999999999999999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 147
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=132.53 Aligned_cols=82 Identities=26% Similarity=0.560 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..+++ .|.|++|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4668999999999999999999999999999999999999999999999999999999999999998 899999999998
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.+.
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 653
No 148
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.6e-18 Score=129.51 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=75.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCee--------EEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g 349 (429)
...++|||+|||..+++++|+++|++||.|. .|+|+.++. +. +|||||+|.+.++|.+|+..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999999 699988854 34 8999999999999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 014173 350 QVLEVVLAKPQTD 362 (429)
Q Consensus 350 ~~l~v~~a~~~~~ 362 (429)
+.|+|.++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999987654
No 149
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=136.09 Aligned_cols=86 Identities=27% Similarity=0.473 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998653
No 150
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=129.07 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=73.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+|+++|+++|++||.|..|.|++++.+. +|||||+|.+.++|.+|+. ++++.|+|+.|+|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 345799999999999999999999999999999999988765 9999999999999999999 89999999999999976
Q ss_pred C
Q 014173 359 P 359 (429)
Q Consensus 359 ~ 359 (429)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 151
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=7.9e-18 Score=137.94 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..|++..|.|++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.+.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99864
No 152
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=4.1e-18 Score=134.40 Aligned_cols=84 Identities=25% Similarity=0.489 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+.++
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 153
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=129.90 Aligned_cols=82 Identities=21% Similarity=0.386 Sum_probs=75.4
Q ss_pred cccceEEEccCCCCCCHHHHH---HHHhccCCeeEEEecCCCCC----C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014173 280 SQVKALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~----~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~ 351 (429)
...++|||+|||+.+++++|+ ++|++||.|..|.|+++..+ . +|||||+|.+.++|.+|+..||+..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 445799999999999999999 99999999999999888753 2 699999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 014173 352 LEVVLAKPQT 361 (429)
Q Consensus 352 l~v~~a~~~~ 361 (429)
|+|.||.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 154
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.5e-18 Score=123.41 Aligned_cols=75 Identities=32% Similarity=0.675 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
+|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++ +++..|.|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999999889999999999999999999996 9999999999999875
No 155
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=126.90 Aligned_cols=83 Identities=23% Similarity=0.489 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999998864 3899999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 98653
No 156
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-18 Score=123.95 Aligned_cols=77 Identities=23% Similarity=0.584 Sum_probs=72.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|+ ++||||+|.+.++|.+|+..||+..|+|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 456899999999999999999999999999999997 38999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 157
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.5e-18 Score=130.55 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=74.4
Q ss_pred cceEEEccCCC------CCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCC-eEE
Q 014173 282 VKALYVKNIPD------NTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG-QVL 352 (429)
Q Consensus 282 ~~~l~v~nlp~------~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g-~~l 352 (429)
.++|||+|||. .+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 9999999999999999999999988874 3 9999999999999999999999999999 999
Q ss_pred EEEeccCC
Q 014173 353 EVVLAKPQ 360 (429)
Q Consensus 353 ~v~~a~~~ 360 (429)
+|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999864
No 158
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=2e-17 Score=135.98 Aligned_cols=133 Identities=21% Similarity=0.249 Sum_probs=108.3
Q ss_pred EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee-------------------cCCcccccccCCC
Q 014173 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL-------------------SETKNRLFIGNVP 195 (429)
Q Consensus 135 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~-------------------~~~~~~l~v~nl~ 195 (429)
.++|..+. ..++|||||+|.+.+.|.+|++.+++.......+.+.. ..+.++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46677765 36899999999999999999988875432222222211 1234789999999
Q ss_pred CCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccccccCCCcceeeecCCCCCC
Q 014173 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (429)
Q Consensus 196 ~~~t~~~l~~~f~~~G~~v~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 273 (429)
+.+++++|+.+|+.||. |..+.++.++ .++.++|||||.|.+.++|..|+..|++. .+.|+.+.|.++.+....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCCS-SCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeecC-CCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence 99999999999999998 9999999884 57889999999999999999999998765 578999999999877543
No 159
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=127.36 Aligned_cols=83 Identities=18% Similarity=0.405 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+++++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999864 3689999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98643
No 160
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=126.15 Aligned_cols=78 Identities=14% Similarity=0.285 Sum_probs=73.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l~v 354 (429)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 45689999999999999999999999999999999887 799999999999999999999999999 99999
Q ss_pred EeccCCCC
Q 014173 355 VLAKPQTD 362 (429)
Q Consensus 355 ~~a~~~~~ 362 (429)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99998543
No 161
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=129.40 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
....++|||+|||+++++++|+++|++|| |..|+|+.+. .+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44678999999999999999999999999 9999999988 58999999999999999999999 899999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 162
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=127.78 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+++|+++|+++|++||.| .|+|+.++ +++++|||||+|.+.++|.+|| .+++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34567899999999999999999999999954 99999998 7999999999999999999999 579999999999998
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.+.
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87653
No 163
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=124.06 Aligned_cols=81 Identities=20% Similarity=0.435 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+.+|+++|+++|++| .|..|+|+.+ .+|+++|||||+|.+.++|.+|+. |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4467899999999999999999999999 9999999999 679999999999999999999998 999999999999999
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8764
No 164
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=126.36 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
...++|||+|||+.+++++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999998764 88999999999999999999999999999999
Q ss_pred EeecCCcc
Q 014173 180 CSLSETKN 187 (429)
Q Consensus 180 v~~~~~~~ 187 (429)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998654
No 165
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=128.88 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=75.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|+|..|+|+.|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999998876543 899999999999999999999999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
.++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8763
No 166
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=4.8e-18 Score=129.92 Aligned_cols=85 Identities=31% Similarity=0.527 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+|+++|||||+|.+.++|.+|+..+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999765 588999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987643
No 167
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=128.81 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+++++|+++|.+||.|..|+|+.++ +++++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456899999999999999999999999999999999987 4999999999999999999999999999999999999998
Q ss_pred CC
Q 014173 184 ET 185 (429)
Q Consensus 184 ~~ 185 (429)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 168
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=131.49 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+++++|+++|++||.|..|+|+.+. +++++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCccc
Q 014173 183 SETKNR 188 (429)
Q Consensus 183 ~~~~~~ 188 (429)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 986543
No 169
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-18 Score=124.03 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|+..++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999888 9999999999876
No 170
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=131.12 Aligned_cols=83 Identities=11% Similarity=0.319 Sum_probs=76.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+ .||++.|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999988764 3 899999999999999999 89999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 171
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=125.74 Aligned_cols=82 Identities=32% Similarity=0.597 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.+.++|||+|||+.+++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 456889999999999999999999999999999999999999999999999999999999997 577899999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
No 172
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=135.75 Aligned_cols=83 Identities=22% Similarity=0.409 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC----ccCCceE
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~l 178 (429)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.||+++|||||+|.+. +|.+|+..|++. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5679999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred EEeecCCccc
Q 014173 179 RCSLSETKNR 188 (429)
Q Consensus 179 ~v~~~~~~~~ 188 (429)
+|.++.+.+.
T Consensus 101 ~V~~a~~~~~ 110 (131)
T 2m2b_A 101 NVEFAKGSKR 110 (131)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 173
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=125.29 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=73.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|.+++ |||||+|.+.++|.+|+..||+..|.|++|+|.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k----g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK----GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT----TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC----CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 456899999999999999999999999999999998764 9999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 174
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=127.77 Aligned_cols=82 Identities=26% Similarity=0.566 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc--------CC
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--------KG 175 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--------~g 175 (429)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356899999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred ceEEEeecCCc
Q 014173 176 KTIRCSLSETK 186 (429)
Q Consensus 176 ~~l~v~~~~~~ 186 (429)
++|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 78999888754
No 175
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=126.69 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=74.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+.+|++||.|..|.|+.++ |||||+|.+.++|.+|+..|++..|.|+.|+|.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK----GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT----TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC----CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 446899999999999999999999999999999999874 9999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 360 QTDK 363 (429)
Q Consensus 360 ~~~~ 363 (429)
+...
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 176
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.1e-17 Score=127.75 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=74.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 456899999999999999999999999999999999888666 9999999999999999999999999999999999986
No 177
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-18 Score=129.07 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCceEE
Q 014173 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (429)
..+.++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|++ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446789999999998 99999999999999999999964 478999999999999999998864 569999999
Q ss_pred EeecCCccccccc
Q 014173 180 CSLSETKNRLFIG 192 (429)
Q Consensus 180 v~~~~~~~~l~v~ 192 (429)
|.++..+..+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999988776654
No 178
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=121.46 Aligned_cols=77 Identities=21% Similarity=0.415 Sum_probs=71.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4568999999999999999999999999999999974 5999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 644
No 179
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=126.36 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=73.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeE--------EEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g 349 (429)
...++|||+|||..+++++|+++|++||.|.. |+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 55689999999999999999999999999999 999887643 4 8999999999999999999999999999
Q ss_pred eEEEEEecc
Q 014173 350 QVLEVVLAK 358 (429)
Q Consensus 350 ~~l~v~~a~ 358 (429)
+.|+|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 180
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=127.63 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+++|++||.|..|+|..+ +.++|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346689999999999999999999999999999999664 56899999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98653
No 181
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=1.5e-18 Score=127.95 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=68.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccC--CeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
.+|||+|||+.+++++|+++|++|| .|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999888643 4 9999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 182
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=126.83 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=72.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
++|||+|||..+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|.+|+..|++..|.|+.|+|.++.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999887 459999999999999999999999999999999999998653
No 183
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=126.13 Aligned_cols=85 Identities=35% Similarity=0.561 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
.++.++|||+|||+.+|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999753 78999999999999999999999999999999999
Q ss_pred cCCcccccccC
Q 014173 183 SETKNRLFIGN 193 (429)
Q Consensus 183 ~~~~~~l~v~n 193 (429)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99988877764
No 184
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=124.39 Aligned_cols=80 Identities=25% Similarity=0.523 Sum_probs=71.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.| +|+.+..+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999977 555555555 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 185
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.6e-18 Score=129.07 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEeecCCCC---CceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 014173 104 PNGSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKESG---ESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~~~~~~~~~---~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 177 (429)
...++|||+|||+.+++++|+ ++|++||.|..|+|+++..++ +++|||||+|.+.++|.+|++.||+..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred EEEeecCCcccc
Q 014173 178 IRCSLSETKNRL 189 (429)
Q Consensus 178 l~v~~~~~~~~l 189 (429)
|+|.++.++...
T Consensus 93 l~V~~a~~k~~~ 104 (111)
T 2cpi_A 93 LKASLGTTKYCS 104 (111)
T ss_dssp EEEESCCCCSCS
T ss_pred EEEEeccccccc
Confidence 999999987643
No 186
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=123.60 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=72.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~--g~~l~v~~a 357 (429)
.+.++|||+|||..+++++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..||+..|. |+.|+|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 44579999999999999999999999999999999876 489999999999999999999999999 999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
.++.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 187
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=126.98 Aligned_cols=82 Identities=30% Similarity=0.382 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE-VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
...++|||+|||+.+|+++|+++|++||.|.. |+|+.+ .+++++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45689999999999999999999999999987 888888 6799999999999999999999976 99999999999998
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.+..
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87543
No 188
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=128.50 Aligned_cols=82 Identities=22% Similarity=0.456 Sum_probs=75.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+||.. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 45689999999999999999999999999999999988653 3 89999999999999999997 999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 189
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=4.3e-18 Score=134.51 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
.+...++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|.+|++ |++..|.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999987 9999999999999999999998 99999999999
Q ss_pred EEeecCCc
Q 014173 179 RCSLSETK 186 (429)
Q Consensus 179 ~v~~~~~~ 186 (429)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998643
No 190
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-18 Score=132.80 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=75.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCe-eEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|++||.| ..|+|+.++.+. +|||||+|.+.++|.+||.. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 899999888665 99999999999999999996 999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 92 ~~~~~ 96 (114)
T 2cpy_A 92 TLEDM 96 (114)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87654
No 191
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=5e-17 Score=127.61 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=77.7
Q ss_pred hcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 279 ~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
....++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3566899999999999999999999999999999999888555 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87544
No 192
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2.7e-17 Score=126.25 Aligned_cols=94 Identities=17% Similarity=0.356 Sum_probs=77.6
Q ss_pred CCcceeeecCCCCCCCchhhhcccceEEEccCCCC-CCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHH
Q 014173 259 GNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337 (429)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~ 337 (429)
|..+.+..+.+..... .....++|||+|||.. +++++|+++|++||.|..|.| .+|||||+|.+.++|.+
T Consensus 7 g~~~~~~~s~~~~~~~---~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~ 77 (110)
T 1wf1_A 7 GMSLKLQASNVTNKND---PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARA 77 (110)
T ss_dssp SCCCCCCCCCSCCSCC---CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHH
T ss_pred CcccccccCCCCCCCC---CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHH
Confidence 4455555444332221 1244589999999999 999999999999999999999 35899999999999999
Q ss_pred HHHHhCCceeCCeEEEEEeccCCC
Q 014173 338 AVKDTEKYEIDGQVLEVVLAKPQT 361 (429)
Q Consensus 338 A~~~l~~~~~~g~~l~v~~a~~~~ 361 (429)
|+..|++..|+|+.|+|.++.++.
T Consensus 78 A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 78 AVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHcCCCEECCeEEEEEECCCCC
Confidence 999999999999999999998643
No 193
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=128.17 Aligned_cols=80 Identities=25% Similarity=0.389 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCccCCceEE
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIR 179 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~ 179 (429)
..++.++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999864 7899999999999999999887 4689999999
Q ss_pred EeecCCcc
Q 014173 180 CSLSETKN 187 (429)
Q Consensus 180 v~~~~~~~ 187 (429)
|.++.++.
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99998653
No 194
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=7.9e-18 Score=132.58 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||+..|+|+.|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 55689999999999999999999999999999999988654 3 899999999999999999999999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8754
No 195
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.3e-18 Score=126.57 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=75.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCee-EEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQV----L 352 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~----l 352 (429)
...++|||+|||..+++++|+++|++||.|. .|.|++++.+ . +|||||+|.+.++|.+|+..||+..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999988744 3 899999999999999999999999999999 9
Q ss_pred EEEeccCCC
Q 014173 353 EVVLAKPQT 361 (429)
Q Consensus 353 ~v~~a~~~~ 361 (429)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998653
No 196
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8e-18 Score=129.09 Aligned_cols=86 Identities=26% Similarity=0.440 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEe-ecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCccCCceE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTI 178 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~l 178 (429)
+.+.++|||+|||+.+|+++|+++|.+||. |..|.++ .+..++.++|||||+|.+.++|.+|+..|+ +..|.|++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecCCccc
Q 014173 179 RCSLSETKNR 188 (429)
Q Consensus 179 ~v~~~~~~~~ 188 (429)
+|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 197
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-18 Score=131.68 Aligned_cols=80 Identities=31% Similarity=0.449 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999999999999999999999999999 9999999999999999875
Q ss_pred c
Q 014173 186 K 186 (429)
Q Consensus 186 ~ 186 (429)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 198
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=4.8e-18 Score=127.88 Aligned_cols=80 Identities=21% Similarity=0.430 Sum_probs=72.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC--CCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
...++|||+|||..+++++|+++|++|| |..|.|+.++ .+. +|||||+|.+.++|.+|+ .|+|..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5568999999999999999999999999 9999999886 344 999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 014173 357 AKPQT 361 (429)
Q Consensus 357 a~~~~ 361 (429)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98753
No 199
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=123.69 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc--CCccCCceEEEe
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCS 181 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~ 181 (429)
++.++|||+|||+.+|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.|+ +..|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998764 7899999999999999999774 677999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.++
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99864
No 200
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=7.4e-18 Score=128.04 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc-e
Q 014173 105 NGSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-T 177 (429)
Q Consensus 105 ~~~~l~v~nLp~~~------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~ 177 (429)
..++|||+|||+.+ |+++|+.+|++||.|..|+|+ ..+|+++|||||+|.+.++|.+|+..|+|..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 35799999999999999999999999999999998 9
Q ss_pred EEEeecCCc
Q 014173 178 IRCSLSETK 186 (429)
Q Consensus 178 l~v~~~~~~ 186 (429)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998753
No 201
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.8e-17 Score=122.13 Aligned_cols=79 Identities=19% Similarity=0.463 Sum_probs=72.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
..++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+ .||+..|.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 347999999999999999999999999999999988763 33 899999999999999999 899999999999999998
Q ss_pred CC
Q 014173 359 PQ 360 (429)
Q Consensus 359 ~~ 360 (429)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 202
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.5e-18 Score=128.22 Aligned_cols=80 Identities=31% Similarity=0.654 Sum_probs=74.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCCc
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (429)
++|||+|||+.+++++|+++|++||.|..|++++++.+++++|||||+|.+.+ |.+|+..|++..+.|++|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999865
Q ss_pred c
Q 014173 187 N 187 (429)
Q Consensus 187 ~ 187 (429)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 203
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=126.80 Aligned_cols=83 Identities=20% Similarity=0.433 Sum_probs=75.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+||.. ++..|+|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 55689999999999999999999999999999999988644 3 89999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 876543
No 204
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=122.16 Aligned_cols=80 Identities=14% Similarity=0.309 Sum_probs=74.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+++++|+++|++| .|..|.|+.+..+. +|||||+|.+.++|.+|+. ||+..|+|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 455899999999999999999999999 99999999886666 9999999999999999999 99999999999999998
Q ss_pred CCC
Q 014173 359 PQT 361 (429)
Q Consensus 359 ~~~ 361 (429)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 763
No 205
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=123.03 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc-eE
Q 014173 106 GSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TI 178 (429)
Q Consensus 106 ~~~l~v~nLp~~~------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~l 178 (429)
+++|||+|||+.+ |+++|+++|++||.|..|+++ +.+|+++|||||+|.+.++|.+|+..|+|..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 789999999999999999987 35799999999999999999999999999999999 88
Q ss_pred EE
Q 014173 179 RC 180 (429)
Q Consensus 179 ~v 180 (429)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 206
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=127.91 Aligned_cols=83 Identities=23% Similarity=0.481 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+.+|+++|+++|++||.|..|+++.+. +.++|||||+|.+.++|.+|+..|++..|.|++|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98764
No 207
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=125.77 Aligned_cols=82 Identities=24% Similarity=0.443 Sum_probs=72.9
Q ss_pred cccceEEEccCCCCC------CHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 014173 280 SQVKALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VL 352 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~-~l 352 (429)
...++|||+|||+.+ ++++|+.+|++||.|..|.|++....++|||||+|.+.++|.+|+..|||..|+|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 345799999999999 78999999999999999999843333389999999999999999999999999998 99
Q ss_pred EEEeccCCC
Q 014173 353 EVVLAKPQT 361 (429)
Q Consensus 353 ~v~~a~~~~ 361 (429)
+|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999998653
No 208
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2e-17 Score=128.79 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=73.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999988643 3 899999999999999999999999999999999997
Q ss_pred c
Q 014173 358 K 358 (429)
Q Consensus 358 ~ 358 (429)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 209
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=3.5e-18 Score=135.83 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|++|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 210
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.8e-17 Score=120.82 Aligned_cols=77 Identities=40% Similarity=0.618 Sum_probs=71.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcc--CCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 556899999999999999999999999 999999885 379999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 211
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-18 Score=131.22 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.+. +++++|||||+|.+.++|.+||.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3466899999999999999999999999999 889999998 899999999999999999999976 9999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 212
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=129.15 Aligned_cols=83 Identities=20% Similarity=0.406 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999998754 57899999999999999999999999999999999
Q ss_pred EEeecCCccc
Q 014173 179 RCSLSETKNR 188 (429)
Q Consensus 179 ~v~~~~~~~~ 188 (429)
+|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987654
No 213
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=2.1e-17 Score=125.63 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=71.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+++++|+++|++|| .|..|.|.... .+|||||+|.+.++|.+|+..|||..|+|+.|+|.++.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3457999999999999999999999999 89999996542 46999999999999999999999999999999999997
Q ss_pred CC
Q 014173 359 PQ 360 (429)
Q Consensus 359 ~~ 360 (429)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 214
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=124.10 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC--ccCCceEEEe
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 181 (429)
++.++|||+|||+.+++++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|++.|++. .|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999998753 789999999999999999988764 5999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998654
No 215
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.8e-18 Score=127.40 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=71.7
Q ss_pred cccceEEEccCCCC-CCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEe
Q 014173 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~v~~ 356 (429)
.+.++|||+|||+. +++++|+++|++||.|.+|.|++.+ |||||+|.+.++|.+|+..|+ +..|.|++|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK----SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT----TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45689999999998 9999999999999999999998654 999999999999999999886 4569999999999
Q ss_pred ccCCCCC
Q 014173 357 AKPQTDK 363 (429)
Q Consensus 357 a~~~~~~ 363 (429)
+..+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876554
No 216
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=9.7e-18 Score=130.11 Aligned_cols=80 Identities=26% Similarity=0.320 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
...++|||+|||+++|+++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|.+||+ +++..|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 46689999999999999999999999998 89999999987 9999999999999999999998 9999999999999
Q ss_pred eecCC
Q 014173 181 SLSET 185 (429)
Q Consensus 181 ~~~~~ 185 (429)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98864
No 217
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=131.32 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=75.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeE--EEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--VVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKY----EIDGQV 351 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~--v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~----~~~g~~ 351 (429)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++. +. ||||||+|.+. +|.+|+..||+. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999976 99999884 44 99999999999 999999999999 999999
Q ss_pred EEEEeccCCCC
Q 014173 352 LEVVLAKPQTD 362 (429)
Q Consensus 352 l~v~~a~~~~~ 362 (429)
|+|.++.+...
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987543
No 218
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=124.04 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=74.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeE-EEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|++||.|.. |.|+.+..+. +|||||+|.+.++|.+||.. ++..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 8888886666 99999999999999999997 999999999999998
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
..+..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 219
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=129.55 Aligned_cols=81 Identities=28% Similarity=0.514 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999976 99999999999999987
Q ss_pred cc
Q 014173 186 KN 187 (429)
Q Consensus 186 ~~ 187 (429)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 220
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=120.01 Aligned_cols=77 Identities=21% Similarity=0.455 Sum_probs=71.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+.+|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|+|+.|+|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4568999999999999999999999999999999974 5899999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 221
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=4.5e-17 Score=124.47 Aligned_cols=83 Identities=20% Similarity=0.442 Sum_probs=73.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..+ +..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 45689999999999999999999999999999999998753 3 999999999999999999976 59999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 222
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-17 Score=122.54 Aligned_cols=82 Identities=26% Similarity=0.486 Sum_probs=74.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. +++.|+|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 4568999999999999999999999999999999998865 34 8999999999999999998 578999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 986543
No 223
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=124.67 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=75.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCC-eeEEEec-CCCCC-C-CcEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMP-PGKSG-K-RDFGFIHYAERSSALKAVKDTE--KYEIDGQVLE 353 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~~-~-kg~afV~F~~~~~A~~A~~~l~--~~~~~g~~l~ 353 (429)
...++|||+|||..+++++|+++|++||. |..|.|+ .++.+ . +|||||+|.+.++|.+|+..|+ +..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34579999999999999999999999998 9999998 56543 3 8999999999999999999996 5899999999
Q ss_pred EEeccCCCCC
Q 014173 354 VVLAKPQTDK 363 (429)
Q Consensus 354 v~~a~~~~~~ 363 (429)
|.|+.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987654
No 224
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=133.46 Aligned_cols=81 Identities=33% Similarity=0.604 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.|++..|.|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred c
Q 014173 183 S 183 (429)
Q Consensus 183 ~ 183 (429)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 225
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=1.7e-17 Score=130.45 Aligned_cols=81 Identities=22% Similarity=0.489 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred Cc
Q 014173 185 TK 186 (429)
Q Consensus 185 ~~ 186 (429)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 226
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3.4e-17 Score=119.94 Aligned_cols=77 Identities=26% Similarity=0.525 Sum_probs=70.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. +++..|+|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 4568999999999999999999999999999999988865 33 8999999999999999997 5888999999999986
No 227
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=126.70 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=72.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...+|||+|||+.+++++|+++|++| .|..|+|+.++.++ +|||||+|.+.++|.+|| .+|+..|+||.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 89999999988776 999999999999999999 5899999999999998876
Q ss_pred C
Q 014173 360 Q 360 (429)
Q Consensus 360 ~ 360 (429)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 228
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=119.82 Aligned_cols=75 Identities=23% Similarity=0.469 Sum_probs=70.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l-~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..|.|++++ |||||+|.+.++|.+|+..| ++..|+|++|+|.|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k----g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ----QCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC----CEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456899999999999999999999999999999998754 99999999999999999998 9999999999999985
No 229
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=125.75 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=71.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+|+++|+++|++|| ++.|+|+.++.+. +|||||+|.+.++|.+||. +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4558999999999999999999999999 4599998888666 9999999999999999995 79999999999999987
Q ss_pred CC
Q 014173 359 PQ 360 (429)
Q Consensus 359 ~~ 360 (429)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 230
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-18 Score=133.11 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3466899999999999999999999999999887777777789999999999999999999998 999999999999999
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 231
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=120.00 Aligned_cols=77 Identities=35% Similarity=0.628 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999996 57999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 232
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=128.17 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=72.4
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+... ...||||||+|.+.++|..|+..|||..|.|++|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 446899999999999999876 69999999999988652 2238999999999999999999999999999999999
Q ss_pred eccCCCC
Q 014173 356 LAKPQTD 362 (429)
Q Consensus 356 ~a~~~~~ 362 (429)
|+..+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987643
No 233
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.9e-17 Score=120.58 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=70.6
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|+|+.|+|.+++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 5568999999998 99999999999999999999994 4899999999999999999999999999999999998
Q ss_pred CC
Q 014173 359 PQ 360 (429)
Q Consensus 359 ~~ 360 (429)
++
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 234
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=124.82 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=72.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||+.+++++|+++|++||.|..|.|++.+ |||||+|.+.++|.+|+..|||..|.|++|+|.|+..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~----g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG----ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS----SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 345799999999999999999999999999999998644 8999999999999999999999999999999999986
Q ss_pred CC
Q 014173 360 QT 361 (429)
Q Consensus 360 ~~ 361 (429)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 235
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=123.72 Aligned_cols=81 Identities=28% Similarity=0.524 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+.+|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3467899999999999999999999999977 55665 5699999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98653
No 236
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.5e-17 Score=118.22 Aligned_cols=73 Identities=25% Similarity=0.472 Sum_probs=68.2
Q ss_pred eEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
+|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. |++..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999998874 33 8999999999999999998 8999999999999886
No 237
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=125.96 Aligned_cols=84 Identities=25% Similarity=0.517 Sum_probs=76.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 445899999999999999999999999999999998876443 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 876554
No 238
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=126.16 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=71.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCe----eEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
...++|||+|||..+++++|+++|++||.| ..+.+.. ...+|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT--GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC--SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC--CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456899999999999999999999999998 5565552 2237999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 014173 356 LAKPQTDK 363 (429)
Q Consensus 356 ~a~~~~~~ 363 (429)
|+.++..+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99986543
No 239
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.9e-17 Score=120.44 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+++++|+++|++| .|..|++. +++|||||+|.+.++|.+|+..|++..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999984 57899999999999999999999999999999999999
Q ss_pred CCcccccccCC
Q 014173 184 ETKNRLFIGNV 194 (429)
Q Consensus 184 ~~~~~l~v~nl 194 (429)
.....+.+.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 98887777664
No 240
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=121.57 Aligned_cols=79 Identities=18% Similarity=0.370 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC--CceEEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRC 180 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~l~v 180 (429)
+.+.++|||+|||+.+|+++|+++|++||.|..|++..+ +|||||+|.+.++|.+|++.|++..|. |++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999998653 789999999999999999999999999 999999
Q ss_pred eecCCcc
Q 014173 181 SLSETKN 187 (429)
Q Consensus 181 ~~~~~~~ 187 (429)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998753
No 241
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.6e-17 Score=126.21 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=73.0
Q ss_pred cCCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 100 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
...++..++|||+|||+++|+++|+++|++|| .|..|.+.. ..++|||||+|.+.++|.+|++.|+|..|.|+.|
T Consensus 22 ~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 22 SKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp ---CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34566778999999999999999999999999 899998853 3479999999999999999999999999999999
Q ss_pred EEeecCC
Q 014173 179 RCSLSET 185 (429)
Q Consensus 179 ~v~~~~~ 185 (429)
+|.++..
T Consensus 98 ~V~~a~~ 104 (111)
T 2jvr_A 98 TVERDDN 104 (111)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9999864
No 242
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=133.86 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=73.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccC--CeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
..++|||+|||+.+++++|+++|++|| .|..|+|+.++.+ . +|||||+|.+.++|.+||..|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 9999999988644 3 99999999999999999999999999999999999
Q ss_pred ccCC
Q 014173 357 AKPQ 360 (429)
Q Consensus 357 a~~~ 360 (429)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 243
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2e-17 Score=123.46 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=71.1
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||. .+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 5568999999998 99999999999999999999995 4899999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
++..
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7644
No 244
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=4.1e-17 Score=124.29 Aligned_cols=77 Identities=26% Similarity=0.448 Sum_probs=71.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|+|+.|+|.|+.+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 556899999999999999999999999999999998 48999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 644
No 245
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.5e-17 Score=115.49 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHH----HHHhhccC-CCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 014173 103 PPNGSEVFIGGLPKDASEED----LRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~----l~~~f~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 177 (429)
++..++|||+|||+.+++++ |+++|++| |+|.+| |+ |+|||.|.+.++|.+|++.|+|..|.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34445599999999999988 55899999 599988 34 99999999999999999999999999999
Q ss_pred EEEeecCCcccccccC
Q 014173 178 IRCSLSETKNRLFIGN 193 (429)
Q Consensus 178 l~v~~~~~~~~l~v~n 193 (429)
|+|.+++.++.++...
T Consensus 76 i~v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 76 IIVSFTPKNRELCETS 91 (96)
T ss_dssp CEEESSCCSCCCCCCC
T ss_pred EEEEecCCCcceeEec
Confidence 9999999988766543
No 246
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=120.45 Aligned_cols=73 Identities=26% Similarity=0.524 Sum_probs=66.0
Q ss_pred ceEEEccCCCCC------CHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEE
Q 014173 283 KALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVV 355 (429)
Q Consensus 283 ~~l~v~nlp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~-~l~v~ 355 (429)
++|||+|||..+ ++++|+++|++||.|..|.|++....++|||||+|.+.++|.+|+..|||..|+|+ +|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 689999999999 77999999999999999999854333489999999999999999999999999999 88773
No 247
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.2e-17 Score=123.77 Aligned_cols=82 Identities=24% Similarity=0.467 Sum_probs=74.8
Q ss_pred hhcCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce
Q 014173 98 QLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (429)
Q Consensus 98 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 177 (429)
.....+...++|||+|||+.+++++|+.+|++||.|..|++. +++|||||+|.+.++|.+|+..|++..|.|+.
T Consensus 19 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 19 IIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp HHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred hhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344556677999999999999999999999999999999997 35889999999999999999999999999999
Q ss_pred EEEeecCC
Q 014173 178 IRCSLSET 185 (429)
Q Consensus 178 l~v~~~~~ 185 (429)
|+|.++++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999875
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=124.62 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+++|+++|+++|++| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+++..|.|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 3689999999999999999999999 899999999876 999999999999999999999 7999999999999988864
Q ss_pred c
Q 014173 186 K 186 (429)
Q Consensus 186 ~ 186 (429)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 249
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=7.4e-18 Score=130.76 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=74.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCC---eeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+||. ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 44689999999999999999999999998 8999999888776 9999999999999999999 99999999999999
Q ss_pred eccCCC
Q 014173 356 LAKPQT 361 (429)
Q Consensus 356 ~a~~~~ 361 (429)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 250
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=122.55 Aligned_cols=83 Identities=31% Similarity=0.557 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+|+++|+++|+.|+ .|+++.+..+++++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999874 67888888889999999999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998754
No 251
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=124.40 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=72.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..+.++.++. +. +|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4458999999999999999999999999998776655543 33 899999999999999999999999999999999998
Q ss_pred cCC
Q 014173 358 KPQ 360 (429)
Q Consensus 358 ~~~ 360 (429)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 252
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=8.7e-17 Score=129.35 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=72.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a 357 (429)
....+|||+||++.+|+++|+++|++||.|.+|.|.... .+|||||+|.+.++|.+|+..|||..|.| +.|+|.|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 345679999999999999999999999999999987543 35899999999999999999999999965 99999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 98753
No 253
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=124.59 Aligned_cols=81 Identities=25% Similarity=0.609 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+++++|+.+|++||.|..|+|+.+ +|||||+|.+.++|.+|+..|++..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567799999999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred ecCCccc
Q 014173 182 LSETKNR 188 (429)
Q Consensus 182 ~~~~~~~ 188 (429)
++.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987643
No 254
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.2e-17 Score=124.65 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=70.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|++||.|..+.++.++.. . +|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999987776665443 3 899999999999999999999999999999999998
Q ss_pred cC
Q 014173 358 KP 359 (429)
Q Consensus 358 ~~ 359 (429)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 255
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.1e-17 Score=123.83 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=70.9
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
..++|||+|||..+++++|+.+|++||.|..|+|.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 3579999999999999999999999999999999844 499999999999999999999999999999999999863
No 256
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-18 Score=128.38 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. +++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999998 999999999999
Q ss_pred EeecCC
Q 014173 180 CSLSET 185 (429)
Q Consensus 180 v~~~~~ 185 (429)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998874
No 257
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=7.1e-18 Score=119.86 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
+|||+|||+++|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999999764
No 258
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=9.2e-18 Score=133.01 Aligned_cols=80 Identities=14% Similarity=0.303 Sum_probs=73.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+|+++|+++|++|| |+.|.|+.++.++ +|||||+|.+.++|.+|| .+|+..|+|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 7799999988776 999999999999999999 689999999999999987
Q ss_pred CCC
Q 014173 359 PQT 361 (429)
Q Consensus 359 ~~~ 361 (429)
+..
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 259
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=5.6e-17 Score=127.43 Aligned_cols=80 Identities=20% Similarity=0.450 Sum_probs=73.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+ .|||..|+|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4568999999999999999999999999999999988753 33 899999999999999999 79999999999999999
Q ss_pred cCC
Q 014173 358 KPQ 360 (429)
Q Consensus 358 ~~~ 360 (429)
++.
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 260
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.7e-17 Score=121.92 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=71.3
Q ss_pred cccceEEE--ccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee-----CCeEE
Q 014173 280 SQVKALYV--KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI-----DGQVL 352 (429)
Q Consensus 280 ~~~~~l~v--~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~-----~g~~l 352 (429)
.++++||| +||++.+++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..| .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 34578999 779999999999999999999999999865 49999999999999999999999988 78999
Q ss_pred EEEeccCCCC
Q 014173 353 EVVLAKPQTD 362 (429)
Q Consensus 353 ~v~~a~~~~~ 362 (429)
.|.|+.....
T Consensus 99 ~v~~a~~~p~ 108 (114)
T 2cq2_A 99 YLNFVEKVQW 108 (114)
T ss_dssp EEEEESCCCC
T ss_pred EEEecccCcc
Confidence 9999986543
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=128.41 Aligned_cols=78 Identities=23% Similarity=0.470 Sum_probs=72.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 56789999999999999999999999999999999988643 3 899999999999999999999999999999999986
No 262
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.7e-18 Score=122.84 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=72.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34579999999999999999999999999999999888643 3 899999999999999999999999999999988766
Q ss_pred c
Q 014173 358 K 358 (429)
Q Consensus 358 ~ 358 (429)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 263
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=121.98 Aligned_cols=78 Identities=21% Similarity=0.464 Sum_probs=69.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCC-eeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~-~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45579999999999999999999999999 6655552 258999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87644
No 264
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.6e-17 Score=124.33 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=74.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCcee--------CCe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI--------DGQ 350 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~--------~g~ 350 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 455899999999999999999999999999999999888555 99999999999999999999999999 688
Q ss_pred EEEEEeccCC
Q 014173 351 VLEVVLAKPQ 360 (429)
Q Consensus 351 ~l~v~~a~~~ 360 (429)
+|+|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999864
No 265
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=3e-17 Score=123.00 Aligned_cols=83 Identities=18% Similarity=0.385 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
.++.++|||+|||+.+++++|+ ++|++||.|..|++.. ++.++|||||+|.+.++|.+|+..|+|..|.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4577899999999999999999 9999999999999874 47889999999999999999999999999999999
Q ss_pred EEeecCCccc
Q 014173 179 RCSLSETKNR 188 (429)
Q Consensus 179 ~v~~~~~~~~ 188 (429)
+|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 266
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.5e-17 Score=122.59 Aligned_cols=77 Identities=27% Similarity=0.438 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC-----ceE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-----KTI 178 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-----~~l 178 (429)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|.+.++|.+||+.||+..|.| ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999875 799999999999999999999999999 999
Q ss_pred EEeecCCcc
Q 014173 179 RCSLSETKN 187 (429)
Q Consensus 179 ~v~~~~~~~ 187 (429)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 267
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=117.75 Aligned_cols=74 Identities=20% Similarity=0.459 Sum_probs=69.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..++ ..|+|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999988753 3 8999999999999999999999 9999999999987
No 268
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=121.23 Aligned_cols=80 Identities=29% Similarity=0.521 Sum_probs=69.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|+.|+ .|.++.+.. +. +|||||+|.+.++|.+||..||++.|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 5668999999999999999999999884 555555543 33 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87644
No 269
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=1.2e-16 Score=119.27 Aligned_cols=79 Identities=25% Similarity=0.448 Sum_probs=71.3
Q ss_pred cCCCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 100 LALPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 100 ~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
....+..++|||+|||+ .+++++|+++|++||.|..|++. +|||||+|.+.++|.+|+..|++..+.|++|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999999982 7899999999999999999999999999999
Q ss_pred EEeecCCc
Q 014173 179 RCSLSETK 186 (429)
Q Consensus 179 ~v~~~~~~ 186 (429)
+|.+++++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998764
No 270
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=121.25 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=70.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|. +.++.+. .+|||||+|.+.++|.+|+..|||..|+|+.|+|.++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG--PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4468999999999999999999999999996 5555432 369999999999999999999999999999999999987
Q ss_pred CC
Q 014173 360 QT 361 (429)
Q Consensus 360 ~~ 361 (429)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 271
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=5.3e-17 Score=121.62 Aligned_cols=81 Identities=22% Similarity=0.473 Sum_probs=73.5
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
.+.++|||+|||..+++++|+ ++|++||.|..|.|.. .+. +|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456899999999999999999 9999999999999873 223 799999999999999999999999999999999
Q ss_pred EeccCCCC
Q 014173 355 VLAKPQTD 362 (429)
Q Consensus 355 ~~a~~~~~ 362 (429)
.|+.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987643
No 272
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.2e-17 Score=119.68 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=68.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+.+|++||.|..|.+ ++.+.+ ||||+|.+.++|.+|+. ||+..|+|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34579999999999999999999999999999833 332223 99999999999999999 999999999999998876
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 273
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=8.1e-17 Score=124.68 Aligned_cols=82 Identities=17% Similarity=0.377 Sum_probs=74.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+... +|||||+|.+.++|.+|+..|||..|+|+.|+|.|+.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 44579999999999999999999999999999999875432 79999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 85 ~~~ 87 (115)
T 3lqv_A 85 NRA 87 (115)
T ss_dssp HHH
T ss_pred Chh
Confidence 544
No 274
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.2e-17 Score=123.24 Aligned_cols=79 Identities=28% Similarity=0.534 Sum_probs=70.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.+ |.+|+..|||..|+|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999988753 3 899999999999 99999999999999999999999876
Q ss_pred CC
Q 014173 361 TD 362 (429)
Q Consensus 361 ~~ 362 (429)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 275
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-18 Score=128.33 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+|++ |++..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999999887 666776778999999999999999999998 9999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 276
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=117.61 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh-cCCccCCceEEEe
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 181 (429)
....++|||+|||+.+++++|+++|++||.|..|++++ ++|||||+|.+.++|.+|+..| ++..+.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34668999999999999999999999999999999976 3789999999999999999988 9999999999999
Q ss_pred ecC
Q 014173 182 LSE 184 (429)
Q Consensus 182 ~~~ 184 (429)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 277
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=2.1e-16 Score=122.39 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=72.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~-afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~ 356 (429)
.....|||+||++.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|+..|||..|.| +.|+|.|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 344678899999999999999999999999999987643 477 9999999999999999999999988 9999999
Q ss_pred ccCCCCC
Q 014173 357 AKPQTDK 363 (429)
Q Consensus 357 a~~~~~~ 363 (429)
+++....
T Consensus 103 ak~~~l~ 109 (130)
T 3zzy_A 103 SKLTSLN 109 (130)
T ss_dssp CSCSSCC
T ss_pred cCCCcee
Confidence 9987543
No 278
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.2e-18 Score=130.09 Aligned_cols=81 Identities=25% Similarity=0.438 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i----~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
..+.++|||+|||+.+|+++|+++|++||.| ..+++. +++++|||||+|.+.++|.+|+..|++..|.|++|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3467899999999999999999999999998 455544 68999999999999999999999999999999999
Q ss_pred EEeecCCcc
Q 014173 179 RCSLSETKN 187 (429)
Q Consensus 179 ~v~~~~~~~ 187 (429)
+|.++.++.
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999998654
No 279
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=120.80 Aligned_cols=79 Identities=28% Similarity=0.485 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|+..|++..|.|++|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3568999999999999999999999999996 66654 467899999999999999999999999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 280
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=128.02 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i----~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
...++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||+. ++..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 467899999999999999999999999975 689999884 799999999999999999999975 99999999999
Q ss_pred EeecCC
Q 014173 180 CSLSET 185 (429)
Q Consensus 180 v~~~~~ 185 (429)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 281
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=118.84 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=73.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEE-EecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v-~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+++++|+.+|++||.|..| .|+.++.+ +.|||+|.+.++|.+|+..|||..|+|++|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345899999999999999999999999999999 58877655 559999999999999999999999999999999999
Q ss_pred CCC
Q 014173 359 PQT 361 (429)
Q Consensus 359 ~~~ 361 (429)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
No 282
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=8.1e-17 Score=134.01 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCccc
Q 014173 182 LSETKNR 188 (429)
Q Consensus 182 ~~~~~~~ 188 (429)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9986543
No 283
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=3.6e-17 Score=127.01 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
+...++|||+|||+++|+++|+++|++| .|+ .|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4467899999999999999999999999 677 999999987 9999999999999999999996 5789999999999
Q ss_pred eecCC
Q 014173 181 SLSET 185 (429)
Q Consensus 181 ~~~~~ 185 (429)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88764
No 284
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=3e-17 Score=129.62 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=74.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCC---eeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+||. ||+..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 44579999999999999999999999999 8899999888776 9999999999999999999 99999999999999
Q ss_pred eccCCC
Q 014173 356 LAKPQT 361 (429)
Q Consensus 356 ~a~~~~ 361 (429)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 987543
No 285
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.3e-16 Score=121.52 Aligned_cols=78 Identities=31% Similarity=0.567 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+.+|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|+..|+|..|.|++|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.+..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998653
No 286
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=8.5e-17 Score=120.23 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=70.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..+ ...+. +|||||+|.+.++|.+|+..|+|..|+|+.|+|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 456899999999999999999999999988766 22233 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7644
No 287
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=117.55 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+|+++|+++|++||.|..|++++ +||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999963 399999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998754
No 288
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.7e-18 Score=133.17 Aligned_cols=84 Identities=32% Similarity=0.516 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 175 (429)
.+.++|||+|||+.+++++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred ceEEEeecCCcc
Q 014173 176 KTIRCSLSETKN 187 (429)
Q Consensus 176 ~~l~v~~~~~~~ 187 (429)
++|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999988653
No 289
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.1e-16 Score=120.39 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=69.9
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEec
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLA 357 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~-afV~F~~~~~A~~A~~~l~~~~~~g--~~l~v~~a 357 (429)
....|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.||
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3456789999999999999999999999999998753 286 9999999999999999999999987 69999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 98754
No 290
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.1e-17 Score=122.90 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=71.9
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecC----HHH----HHHHHH--HhcCCc
Q 014173 107 SEVFIGGL----PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS----KEF----AKKAID--ELHSKE 172 (429)
Q Consensus 107 ~~l~v~nL----p~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~----a~~a~~--~l~~~~ 172 (429)
+.|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +.. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 333 888988 689999
Q ss_pred cCCceEEEeecCC
Q 014173 173 LKGKTIRCSLSET 185 (429)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (429)
|.|++|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 291
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-17 Score=124.34 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+.+|+++|+++|++||.|..|+|+. ++|||||+|.+.++|.+|+..||+..|.|++|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999999864 57899999999999999999999999999999999986
Q ss_pred C
Q 014173 185 T 185 (429)
Q Consensus 185 ~ 185 (429)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 292
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-16 Score=115.74 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=70.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|| .+++++|+++|++||.|..|.|... +|||||+|.+.++|.+|+..||+..|.|++|+|.|+.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 45689999996 8999999999999999999999533 59999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 293
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.8e-17 Score=131.28 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+++|+++|+++|++|| |+.|+|+.++. ++++|||||+|.+.++|.+|| .+++..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34668999999999999999999999999 67999999976 999999999999999999999 7899999999999988
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+.+.
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 294
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=116.84 Aligned_cols=78 Identities=35% Similarity=0.538 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|||+.+|+++|+.+|++||.|..|++++ +||||+|.+.++|.+|+..|++..|.|++|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999963 399999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998653
No 295
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=5.5e-17 Score=121.26 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|++..|.|++|+|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 56899999999999999999999999987665 3458899999999999999999999999999999999999997
Q ss_pred Ccc
Q 014173 185 TKN 187 (429)
Q Consensus 185 ~~~ 187 (429)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 296
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-17 Score=124.07 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=71.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCC-CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||..+++++|+++|++||.|.. .++.+.. +. +|||||+|.+.++|.+|+. ||+..|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45689999999999999999999999998877 4444432 33 8999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 014173 358 KPQTDK 363 (429)
Q Consensus 358 ~~~~~~ 363 (429)
.++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 297
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.2e-16 Score=119.29 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 103 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.++.++|||+|||+ .+|+++|+.+|++||.|..|++. +|||||+|.+.++|.+|+..|++..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45778999999999 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred ecCCc
Q 014173 182 LSETK 186 (429)
Q Consensus 182 ~~~~~ 186 (429)
++.++
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98754
No 298
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=124.41 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCC---eeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++.+. +|||||+|.+.++|.+||. +|+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45689999999999999999999999998 8999999988766 9999999999999999999 99999999999999
Q ss_pred eccCCC
Q 014173 356 LAKPQT 361 (429)
Q Consensus 356 ~a~~~~ 361 (429)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 998654
No 299
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=2e-16 Score=119.75 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
.+.++|||+|||+.+|+++|+++|++||.|..|+++ ++||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8653
No 300
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=111.53 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=66.6
Q ss_pred ccce-EEEccCCCCCCHHH----HHHHHhccC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 281 QVKA-LYVKNIPDNTSTEK----IKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 281 ~~~~-l~v~nlp~~~te~~----L~~~F~~~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
++.+ |||+|||+.+++++ |+++|++|| .|.+|. + |+|||.|.+.++|.+|++.|+|..|.||+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------g--G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------G--CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------T--TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------c--CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 3445 99999999999988 558999995 999992 2 89999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 014173 355 VLAKPQTDK 363 (429)
Q Consensus 355 ~~a~~~~~~ 363 (429)
.||+.+...
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999987654
No 301
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=4.3e-17 Score=123.34 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+.+++++|+.+|++||.|..|+++.+. +++++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 89999999999999999999997 9999999999999887
Q ss_pred Ccc
Q 014173 185 TKN 187 (429)
Q Consensus 185 ~~~ 187 (429)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 302
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=4.8e-18 Score=131.78 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=75.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeE--------EEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g 349 (429)
...++|||+|||..+++++|+++|++||.|.. |.|+.++.+ . +|||||+|.+.++|.+|+..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 44579999999999999999999999999998 888887543 3 8999999999999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 014173 350 QVLEVVLAKPQTD 362 (429)
Q Consensus 350 ~~l~v~~a~~~~~ 362 (429)
+.|+|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987543
No 303
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=7.1e-17 Score=114.65 Aligned_cols=73 Identities=27% Similarity=0.466 Sum_probs=67.7
Q ss_pred eEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC-C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
+|||+|||..+++++|+++|++||.|..|.++.++.+ . +|||||+|.+.++|.+|+.. ++..|+|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5999999999999999999999999999999888653 3 89999999999999999995 899999999999886
No 304
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=2.6e-16 Score=121.49 Aligned_cols=75 Identities=15% Similarity=0.289 Sum_probs=66.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV-----LEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~-----l~v 354 (429)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|+|+. |+|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 34579999999999999999999999999999999876 79999999999999999999999999998 666
Q ss_pred EeccC
Q 014173 355 VLAKP 359 (429)
Q Consensus 355 ~~a~~ 359 (429)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 66655
No 305
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=116.95 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC--CCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
...++|||+|||+.+|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+..|++..|.|++|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 356899999999999999999999999 999998874 5799999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998754
No 306
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=2.3e-16 Score=128.28 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.....++|||+|||+.+|+++|+++|++||.|..|+++++ ++|||||+|.+.++|.+|+..|++..|.|++|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3446789999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.+++
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998653
No 307
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=7.7e-16 Score=112.74 Aligned_cols=76 Identities=22% Similarity=0.446 Sum_probs=62.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~--~~g~~l~v~~a 357 (429)
....+|||+|||+.+|+++|+++|++||.|..|+|+++ +||||||+|.+.++|.+ |++.. +.|+.|.|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 45689999999999999999999999999999999885 46999999999999983 45554 56999999999
Q ss_pred cCCCC
Q 014173 358 KPQTD 362 (429)
Q Consensus 358 ~~~~~ 362 (429)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 308
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=117.45 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEE-EeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~-~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..++|||+|||+.+|+++|+.+|++||.|..|+ ++.++.++ .|||+|.+.++|.+|+..|++..|.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468999999999999999999999999999994 77776543 3999999999999999999999999999999999
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 865
No 309
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=120.47 Aligned_cols=79 Identities=30% Similarity=0.486 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|++ ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4568999999999999999999999999999 888888777 79999999999999999999998843 66776666
Q ss_pred eecCC
Q 014173 181 SLSET 185 (429)
Q Consensus 181 ~~~~~ 185 (429)
..+.+
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 65443
No 310
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.1e-17 Score=124.81 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=72.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCe----eEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
....+|||+|||+.+|+++|+++|++||.| ..|+|+.+..++ +|||||+|.+.++|.+||.. |+..|+||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 345799999999999999999999999975 689888877666 99999999999999999996 999999999999
Q ss_pred EeccCCC
Q 014173 355 VLAKPQT 361 (429)
Q Consensus 355 ~~a~~~~ 361 (429)
..+.++.
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987654
No 311
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.7e-16 Score=119.99 Aligned_cols=81 Identities=20% Similarity=0.395 Sum_probs=74.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 455899999999999999999999999999999999888555 9999999999999999998 9999999999999998
Q ss_pred CCCC
Q 014173 359 PQTD 362 (429)
Q Consensus 359 ~~~~ 362 (429)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7654
No 312
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=8.2e-16 Score=127.48 Aligned_cols=82 Identities=27% Similarity=0.549 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+.+|+++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|+..|+|..|.|++|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cC
Q 014173 183 SE 184 (429)
Q Consensus 183 ~~ 184 (429)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 313
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=117.59 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC-CccCCceEEE
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKTIRC 180 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~l~v 180 (429)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|++ ..|.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6555552 478999999999999999999999 9999999999
Q ss_pred eecCCcc
Q 014173 181 SLSETKN 187 (429)
Q Consensus 181 ~~~~~~~ 187 (429)
.++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998653
No 314
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.5e-17 Score=125.92 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=71.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeE-EEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
...++|||+|||+.+++++|+++|++||.|.. +.+.....+. +|||||+|.+.++|.+||. ||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999987 4444444555 9999999999999999999 9999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
..+.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8654
No 315
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.8e-16 Score=123.00 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=72.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCee--EEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
...++|||+|||+.+|+++|+++|++| .|+ .|+|+.++.++ +|||||+|.+.++|.+||.. ++..|+||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 445789999999999999999999999 677 99999988876 99999999999999999985 77999999999998
Q ss_pred ccCCC
Q 014173 357 AKPQT 361 (429)
Q Consensus 357 a~~~~ 361 (429)
+..+.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87543
No 316
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=4.3e-16 Score=129.60 Aligned_cols=82 Identities=28% Similarity=0.433 Sum_probs=76.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..|+|+.|+|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 556899999999999999999999999999999999988555 8999999999999999999999999999999999998
Q ss_pred CCC
Q 014173 359 PQT 361 (429)
Q Consensus 359 ~~~ 361 (429)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 317
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=115.10 Aligned_cols=78 Identities=24% Similarity=0.413 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
....++|||+|||+++|+++|+.+|++||.|..| +.+..+++ ||||+|.+.++|.+|+. |++..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55555555 99999999999999998 999999999999998
Q ss_pred cCCc
Q 014173 183 SETK 186 (429)
Q Consensus 183 ~~~~ 186 (429)
+.++
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 8754
No 318
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=3.8e-16 Score=114.46 Aligned_cols=76 Identities=17% Similarity=0.354 Sum_probs=69.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
..++|||+|||+.+++++|+++|++| .|..|.|. ..+|||||+|.+.++|.+|+..|||..|.|++|+|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45799999999999999999999999 99999885 23699999999999999999999999999999999999764
Q ss_pred C
Q 014173 361 T 361 (429)
Q Consensus 361 ~ 361 (429)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 319
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=117.87 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=69.7
Q ss_pred cCCCCCCCEEEE--cCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc----
Q 014173 100 LALPPNGSEVFI--GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---- 173 (429)
Q Consensus 100 ~~~~~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---- 173 (429)
.....++++||| +|||+.+|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|||..|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 344456789999 77999999999999999999999998853 378999999999999999999999988
Q ss_pred -CCceEEEeecC
Q 014173 174 -KGKTIRCSLSE 184 (429)
Q Consensus 174 -~g~~l~v~~~~ 184 (429)
.|++|.|.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 68899998875
No 320
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=4.8e-16 Score=119.19 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 105 NGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
..++|||+|||+. +|+++|+++|++||.|..|++ ++|||||+|.+.++|.+|+..|++..|.|++|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4789999999999999999999999999999999999
Q ss_pred CCc
Q 014173 184 ETK 186 (429)
Q Consensus 184 ~~~ 186 (429)
.+.
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 321
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=113.79 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=66.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|.+|+. ....+.|++|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 34589999999999999999999999999999999875 46999999999999976433 23456999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 322
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.7e-15 Score=114.14 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHhhccCCCeEEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHHhcCCccCCc
Q 014173 103 PPNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (429)
Q Consensus 103 ~~~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 176 (429)
+.++++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35778999999963 2478999999999999999999998654 68999999999999999999999999999999
Q ss_pred eEEEeecCC
Q 014173 177 TIRCSLSET 185 (429)
Q Consensus 177 ~l~v~~~~~ 185 (429)
+|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 323
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=113.73 Aligned_cols=77 Identities=21% Similarity=0.492 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|| ++|+++|+++|++||.|..|+|. +++|||||+|.+.++|.+|+..|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346689999996 89999999999999999999983 5688999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98654
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=124.69 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE--------EEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV--------RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v--------~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 174 (429)
..+.++|||+|||+.+|+++|+.+|++||.|..| ++. .+++++|||||+|.+.++|.+|+..||+..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999999999988763 333 35889999999999999999999999999999
Q ss_pred CceEEEeecCCc
Q 014173 175 GKTIRCSLSETK 186 (429)
Q Consensus 175 g~~l~v~~~~~~ 186 (429)
|+.|.|.++.+.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999999754
No 325
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=7.9e-16 Score=146.28 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred Cc
Q 014173 185 TK 186 (429)
Q Consensus 185 ~~ 186 (429)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 64
No 326
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.7e-15 Score=121.86 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC--ceEEEe
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 181 (429)
....+|||+|||+.+|+++|+++|++||.|.+|+|... .++|||||+|.+.++|.+|++.|+|..|.| ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34457899999999999999999999999999998653 358899999999999999999999999966 999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998753
No 327
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=1.2e-15 Score=131.80 Aligned_cols=82 Identities=12% Similarity=0.293 Sum_probs=74.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
.+.++|||+|||+.+|+++|+++|++||.|.+|+|++++.+. +|||||+|.+.++|.+|+..+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456799999999999999999999999999999999877543 899999999999999999999999999999999998
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 328
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.1e-15 Score=111.94 Aligned_cols=77 Identities=31% Similarity=0.540 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc--cCCceEE
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIR 179 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~ 179 (429)
.++..++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|++|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3457789999999999999999999999999999999874 68999999999999983 45555 4599999
Q ss_pred EeecCCcc
Q 014173 180 CSLSETKN 187 (429)
Q Consensus 180 v~~~~~~~ 187 (429)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99988653
No 329
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.5e-15 Score=130.37 Aligned_cols=84 Identities=19% Similarity=0.472 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|..|+++.+..+++++|||||+|.+.++|.+|+..|++..|.|++|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 46689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 330
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.3e-15 Score=127.01 Aligned_cols=81 Identities=28% Similarity=0.556 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+..|+|..+.|++|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred C
Q 014173 184 E 184 (429)
Q Consensus 184 ~ 184 (429)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.7e-15 Score=117.29 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhcCCccCC--ceEEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRC 180 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v 180 (429)
..--.|||+|||+.+|+++|+++|++||.|.+|+++.. .+|+ |||+|.+.++|.+|++.|+|..|.| ++|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34457889999999999999999999999999998764 2577 9999999999999999999999998 89999
Q ss_pred eecCCcc
Q 014173 181 SLSETKN 187 (429)
Q Consensus 181 ~~~~~~~ 187 (429)
.++++.+
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.6e-15 Score=111.04 Aligned_cols=72 Identities=25% Similarity=0.458 Sum_probs=67.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcc----C-------CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRH----G-------EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~ 348 (429)
...++|||+|||+.+++++|+++|++| | .|..+.+.+++ |||||+|.+.++|.+|+ .||+..|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----g~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----NFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----SEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----cEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 456899999999999999999999999 8 89999998764 99999999999999999 99999999
Q ss_pred CeEEEEEe
Q 014173 349 GQVLEVVL 356 (429)
Q Consensus 349 g~~l~v~~ 356 (429)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 333
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.1e-15 Score=113.65 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=70.6
Q ss_pred cccceEEEccCCC-----CCCHHHHHHHHhccCCeeEEEecCCCC--CC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 014173 280 SQVKALYVKNIPD-----NTSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (429)
Q Consensus 280 ~~~~~l~v~nlp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~--~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~ 351 (429)
.++++|+|.||.. ..++++|+++|++||.|.+|.|++++. +. +|||||+|.+.++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568999999973 237899999999999999999988753 23 899999999999999999999999999999
Q ss_pred EEEEeccC
Q 014173 352 LEVVLAKP 359 (429)
Q Consensus 352 l~v~~a~~ 359 (429)
|+|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 334
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=4.1e-16 Score=125.69 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=70.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEE--------EecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV--------VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v--------~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~ 350 (429)
.+.++|||+|||+.+|+++|+.+|++||.|..+ ++. ..+. +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 445799999999999999999999999988764 322 2333 89999999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 014173 351 VLEVVLAKPQTD 362 (429)
Q Consensus 351 ~l~v~~a~~~~~ 362 (429)
.|+|.|+++...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 335
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=3.7e-15 Score=125.86 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccccccCCCcceeeecCCCCCCCc---hhhhcccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCC
Q 014173 241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH---SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317 (429)
Q Consensus 241 ~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~ 317 (429)
.....|+.......+.+......+........+.. .......++|||+|||..+++++|+++|++||.|..|+|+++
T Consensus 65 ~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 144 (193)
T 2voo_A 65 NVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT 144 (193)
T ss_dssp HHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC
T ss_pred HHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC
Confidence 44444444332234455666566655532221111 012245689999999999999999999999999999999988
Q ss_pred CCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCCC
Q 014173 318 KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (429)
Q Consensus 318 ~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 363 (429)
..+. +|||||+|.+.++|.+|+..+ +..|+|++|+|.++..-...
T Consensus 145 ~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~~~ 190 (193)
T 2voo_A 145 LHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYFAK 190 (193)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC---
T ss_pred CCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHHHH
Confidence 7766 999999999999999999865 46999999999998865443
No 336
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=9.4e-16 Score=118.31 Aligned_cols=74 Identities=28% Similarity=0.456 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCce-----EE
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-----IR 179 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~-----l~ 179 (429)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred EeecCC
Q 014173 180 CSLSET 185 (429)
Q Consensus 180 v~~~~~ 185 (429)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666554
No 337
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=2.3e-15 Score=128.68 Aligned_cols=85 Identities=27% Similarity=0.524 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
+...++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCcc
Q 014173 183 SETKN 187 (429)
Q Consensus 183 ~~~~~ 187 (429)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98653
No 338
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=3e-15 Score=127.92 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=72.3
Q ss_pred ccceEEEccCC-CCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 281 QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 281 ~~~~l~v~nlp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
..++|||+||| ..+++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 35799999999 899999999999999999999998764 58999999999999999999999999999999999976
Q ss_pred CC
Q 014173 360 QT 361 (429)
Q Consensus 360 ~~ 361 (429)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-15 Score=114.69 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=69.0
Q ss_pred ceEEEccC----CCCCCHHHHHHHHhccCCeeEEEecCCCCCC--CcEEEEEeCC----HHH----HHHHHH--HhCCce
Q 014173 283 KALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAE----RSS----ALKAVK--DTEKYE 346 (429)
Q Consensus 283 ~~l~v~nl----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--kg~afV~F~~----~~~----A~~A~~--~l~~~~ 346 (429)
+.|||+|| |+.+++..|+.+|++||.|..+.++.|+.+. +|||||+|.+ ++. |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999875 9999999996 333 889988 789999
Q ss_pred eCCeEEEEEeccC
Q 014173 347 IDGQVLEVVLAKP 359 (429)
Q Consensus 347 ~~g~~l~v~~a~~ 359 (429)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 340
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=5.4e-15 Score=122.76 Aligned_cols=80 Identities=23% Similarity=0.526 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC--ceEEEe
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~ 181 (429)
...++|||+|||+.+++++|+++|++||.|..|+++++..++.++|||||+|.+.++|.+|+..|+|..+.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998889999999999999999999999999999988 999998
Q ss_pred ec
Q 014173 182 LS 183 (429)
Q Consensus 182 ~~ 183 (429)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 341
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=9.8e-16 Score=127.18 Aligned_cols=81 Identities=23% Similarity=0.559 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+.+|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35789999999999999999999999999999999998889999999999999999999996 89999999999999998
Q ss_pred Cc
Q 014173 185 TK 186 (429)
Q Consensus 185 ~~ 186 (429)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 342
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=4.7e-15 Score=122.96 Aligned_cols=81 Identities=25% Similarity=0.511 Sum_probs=74.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCC-CCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
.++|||+|||..+++++|+++|++||.|..|.+++++ .+. +|||||+|.+.++|.+|+..|++..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4799999999999999999999999999999998887 444 89999999999999999999999999999999999986
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 343
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=1.8e-15 Score=110.68 Aligned_cols=71 Identities=25% Similarity=0.545 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 173 (429)
..++|||+|||+.+|+++|+++|++| | .|..+++.++ +|||||+|.+.++|.+|+ .|++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999998643 789999999999999999 9999999
Q ss_pred CCceEEEee
Q 014173 174 KGKTIRCSL 182 (429)
Q Consensus 174 ~g~~l~v~~ 182 (429)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=7.4e-15 Score=113.36 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=67.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhcCCccCC--ceEEEeec
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 183 (429)
..|||+|||+.+|+++|+.+|++||.|.+|+|... .|| |||+|.+.++|..|++.|+|..|.| ++|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999999652 276 9999999999999999999999988 69999999
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8765
No 345
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.59 E-value=5e-15 Score=126.33 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999999998899999999999999999999965 899999999999999
Q ss_pred CCccc
Q 014173 184 ETKNR 188 (429)
Q Consensus 184 ~~~~~ 188 (429)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87543
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=3.9e-15 Score=115.58 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=70.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|| .+++++|+.+|++||.|..|.|... +|||||+|.+.++|.+|+..||+..|.|+.|+|.|+.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~----kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT----TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 45689999996 6999999999999999999999633 59999999999999999999999999999999999987
Q ss_pred CCC
Q 014173 360 QTD 362 (429)
Q Consensus 360 ~~~ 362 (429)
+..
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.4e-15 Score=113.18 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=67.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCC----C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~----~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ . +|||||+|.+.++|.+|+..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4458999999999999999999999999999 888776643 4 9999999999999999999885 478888888
Q ss_pred EeccCC
Q 014173 355 VLAKPQ 360 (429)
Q Consensus 355 ~~a~~~ 360 (429)
..+...
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 765543
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-14 Score=109.98 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=69.6
Q ss_pred cccceEEEccCCCCCC-----------HHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeC
Q 014173 280 SQVKALYVKNIPDNTS-----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~ 348 (429)
.++++|+|.||..... +++|+++|++||.|..|.|.. +. .+|||||+|.+.++|.+|+..|||+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~-~~-~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD-RH-PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEET-TC-TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEec-CC-CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4568999999954433 589999999999999997743 32 4799999999999999999999999999
Q ss_pred CeEEEEEeccCCCC
Q 014173 349 GQVLEVVLAKPQTD 362 (429)
Q Consensus 349 g~~l~v~~a~~~~~ 362 (429)
|++|+|.|+.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987644
No 349
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=9.8e-15 Score=123.28 Aligned_cols=78 Identities=27% Similarity=0.452 Sum_probs=71.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecCC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (429)
.++|||+|||+++|+++|+++|++||.|..|+|+++.. ++++|||||+|.+.++|.+|+..+ +..|.|++|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999999864 999999999999999999999654 5689999999998764
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=8.9e-15 Score=113.57 Aligned_cols=78 Identities=21% Similarity=0.480 Sum_probs=70.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
.+...++|||+|| ++|+++|+.+|++||.|..|++. .++|||||+|.+.++|.+|+..|++..|.|++|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 468999999999999999999999999999999999
Q ss_pred ecCCcc
Q 014173 182 LSETKN 187 (429)
Q Consensus 182 ~~~~~~ 187 (429)
++.+..
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998653
No 351
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.6e-14 Score=120.68 Aligned_cols=80 Identities=26% Similarity=0.562 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC---CceEEE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIRC 180 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~v 180 (429)
...++|||+|||+.+|+++|+++|++||.|..|+++++.. |.++|||||+|.+.++|.+|+..|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 3567999999999999999999999999999999999864 999999999999999999999999998776 499999
Q ss_pred eecC
Q 014173 181 SLSE 184 (429)
Q Consensus 181 ~~~~ 184 (429)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-15 Score=110.60 Aligned_cols=77 Identities=31% Similarity=0.522 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeec
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (429)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+. ....+.|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999999764 68999999999999986432 133458999999998
Q ss_pred CCcc
Q 014173 184 ETKN 187 (429)
Q Consensus 184 ~~~~ 187 (429)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.4e-14 Score=109.16 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=70.2
Q ss_pred cccceEEEccC--CCCCC--------HHHHHHHHhccCCeeEEEecCCCCC---C-CcEEEEEeCCHHHHHHHHHHhCCc
Q 014173 280 SQVKALYVKNI--PDNTS--------TEKIKELFQRHGEVTKVVMPPGKSG---K-RDFGFIHYAERSSALKAVKDTEKY 345 (429)
Q Consensus 280 ~~~~~l~v~nl--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~~---~-kg~afV~F~~~~~A~~A~~~l~~~ 345 (429)
.++++|.|.|+ |..+. .++|++.|++||.|.+|.|++++.+ . +|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34679999998 44443 3689999999999999999988754 2 899999999999999999999999
Q ss_pred eeCCeEEEEEeccCC
Q 014173 346 EIDGQVLEVVLAKPQ 360 (429)
Q Consensus 346 ~~~g~~l~v~~a~~~ 360 (429)
.|+||.|+|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=4.2e-15 Score=128.01 Aligned_cols=80 Identities=24% Similarity=0.384 Sum_probs=70.5
Q ss_pred cccceEEEccCCCCC---------CHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCcee---
Q 014173 280 SQVKALYVKNIPDNT---------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--- 347 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~--- 347 (429)
...++|||+||+..+ ++++|+.+|++||.|..|+|+..+ |||||+|.+.++|..|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k----G~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK----NCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG----TEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC----CEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 456899999999988 799999999999999999998654 9999999999999999999999999
Q ss_pred ---------CCeEEEEEeccCCCCC
Q 014173 348 ---------DGQVLEVVLAKPQTDK 363 (429)
Q Consensus 348 ---------~g~~l~v~~a~~~~~~ 363 (429)
.|+.|.|.||.....+
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.2e-14 Score=109.13 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=73.1
Q ss_pred cCCCCCCCEEEEcCCCCCCC-----------HHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 014173 100 LALPPNGSEVFIGGLPKDAS-----------EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (429)
Q Consensus 100 ~~~~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 168 (429)
...+.++++|+|+||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34567889999999944332 5799999999999999966 443 37999999999999999999999
Q ss_pred cCCccCCceEEEeecCCcccc
Q 014173 169 HSKELKGKTIRCSLSETKNRL 189 (429)
Q Consensus 169 ~~~~~~g~~l~v~~~~~~~~l 189 (429)
||..|.|++|.|.++.++...
T Consensus 85 ng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTCEETTEECEEEECCSCCCS
T ss_pred CCCEECCcEEEEEEeCCCCCc
Confidence 999999999999999876543
No 356
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.4e-13 Score=122.83 Aligned_cols=80 Identities=20% Similarity=0.446 Sum_probs=73.1
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v 354 (429)
...++|||+|||..+++++|+ ++|++||.|..|+|.+ .+. +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 556899999999999999977 8999999999999986 333 899999999999999999999999999999999
Q ss_pred EeccCCC
Q 014173 355 VLAKPQT 361 (429)
Q Consensus 355 ~~a~~~~ 361 (429)
.|+....
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997655
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=4.5e-14 Score=123.33 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=74.7
Q ss_pred hcccceEEEccCCC-CCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 014173 279 ASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (429)
Q Consensus 279 ~~~~~~l~v~nlp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a 357 (429)
....++|||+|||. .+++++|+++|++||.|..|+|++++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 35678999999999 99999999999999999999999876 589999999999999999999999999999999999
Q ss_pred cCCC
Q 014173 358 KPQT 361 (429)
Q Consensus 358 ~~~~ 361 (429)
....
T Consensus 108 ~~~~ 111 (229)
T 2adc_A 108 KHQN 111 (229)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 8664
No 358
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=1.7e-14 Score=120.56 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEeecC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (429)
..++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|++|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999987665 4568999999999999999999999999999999999999998
Q ss_pred Cc
Q 014173 185 TK 186 (429)
Q Consensus 185 ~~ 186 (429)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.3e-14 Score=123.41 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCC---------CHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 014173 102 LPPNGSEVFIGGLPKDA---------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 172 (429)
.....++|||+|||+.+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|..|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34567999999999998 7999999999999999999975 48999999999999999999999999
Q ss_pred c------------CCceEEEeecCCcc
Q 014173 173 L------------KGKTIRCSLSETKN 187 (429)
Q Consensus 173 ~------------~g~~l~v~~~~~~~ 187 (429)
| .|+.|.|.|+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998653
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=4.1e-14 Score=106.57 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=72.0
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHhhccCCCeEEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhcCC
Q 014173 104 PNGSEVFIGGL--PKDAS--------EEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSK 171 (429)
Q Consensus 104 ~~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~i~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~ 171 (429)
.++++|.|.|+ |..+. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999998 44443 3689999999999999999988754 468999999999999999999999999
Q ss_pred ccCCceEEEeecCC
Q 014173 172 ELKGKTIRCSLSET 185 (429)
Q Consensus 172 ~~~g~~l~v~~~~~ 185 (429)
.+.||+|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998764
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=1.1e-14 Score=109.54 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=62.7
Q ss_pred EccCCCCCCHHHHHHHH------------hccCCeeEEEecCCCCCC-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 014173 287 VKNIPDNTSTEKIKELF------------QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (429)
Q Consensus 287 v~nlp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~~~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~ 353 (429)
+.|||..+++++|+++| ++||.|.+|.|+++..++ +|||||+|.+.++|.+|+..|||+.|+||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677777777776666 999999999999887666 99999999999999999999999999999999
Q ss_pred EEec
Q 014173 354 VVLA 357 (429)
Q Consensus 354 v~~a 357 (429)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=5.3e-14 Score=107.97 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=69.5
Q ss_pred cccceEEEccCCC--C---CCHHHHHHHHhccCCeeEEEecCCCCC-----C-CcEEEEEeCCHHHHHHHHHHhCCceeC
Q 014173 280 SQVKALYVKNIPD--N---TSTEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEID 348 (429)
Q Consensus 280 ~~~~~l~v~nlp~--~---~te~~L~~~F~~~G~i~~v~i~~~~~~-----~-kg~afV~F~~~~~A~~A~~~l~~~~~~ 348 (429)
.++++|+|.|+-. . -.+++|++.|++||.|.+|.|++++.+ . +|++||+|.+.++|.+|+..|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4568999999942 2 236899999999999999999887542 2 799999999999999999999999999
Q ss_pred CeEEEEEeccC
Q 014173 349 GQVLEVVLAKP 359 (429)
Q Consensus 349 g~~l~v~~a~~ 359 (429)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=7.2e-14 Score=119.32 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=72.9
Q ss_pred cceEEEccCCC-CCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 282 VKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 282 ~~~l~v~nlp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
.++|||+|||. .+++++|+++|++||.|..|+|+.++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 36999999999 99999999999999999999999876 589999999999999999999999999999999999876
Q ss_pred CC
Q 014173 361 TD 362 (429)
Q Consensus 361 ~~ 362 (429)
..
T Consensus 80 ~~ 81 (198)
T 1qm9_A 80 NV 81 (198)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 364
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=1.3e-13 Score=122.82 Aligned_cols=77 Identities=29% Similarity=0.462 Sum_probs=71.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
...++|||+|||..+|+++|+++|++||.|..|.|.+++ |||||+|.+.++|.+|+..|+|..|.|+.|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k----g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR----GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT----TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC----cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 556899999999999999999999999999999997654 9999999999999999999999999999999999975
Q ss_pred C
Q 014173 360 Q 360 (429)
Q Consensus 360 ~ 360 (429)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.5e-13 Score=105.47 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCC--CCC---CHHHHHHhhccCCCeEEEEEeecCC----CCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 014173 104 PNGSEVFIGGLP--KDA---SEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (429)
Q Consensus 104 ~~~~~l~v~nLp--~~~---t~~~l~~~f~~~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 174 (429)
+++++|+|+|+- .++ .+++|++.|++||.|.+|+|+++.. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 378999999993 222 3689999999999999999998864 4678899999999999999999999999999
Q ss_pred CceEEEeecCC
Q 014173 175 GKTIRCSLSET 185 (429)
Q Consensus 175 g~~l~v~~~~~ 185 (429)
||.|+|.+...
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998764
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.5e-13 Score=98.53 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCCCC
Q 014173 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (429)
Q Consensus 292 ~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 362 (429)
..+++++|+++|++||.|..|.|+. ..+|||||+|.+.++|..|+..+++ +.|++|+|.|+.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4689999999999999999999983 2379999999999999999997554 6799999999987643
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=3.4e-14 Score=106.93 Aligned_cols=72 Identities=28% Similarity=0.443 Sum_probs=63.3
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 111 IGGLPKDASEEDLRDLC------------EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 111 v~nLp~~~t~~~l~~~f------------~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
+.+||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777777666 9999999999998765 7899999999999999999999999999999999
Q ss_pred EEeec
Q 014173 179 RCSLS 183 (429)
Q Consensus 179 ~v~~~ 183 (429)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=7.2e-13 Score=100.85 Aligned_cols=79 Identities=11% Similarity=0.211 Sum_probs=68.0
Q ss_pred cccceEEEccCCCCCC----------HHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCC
Q 014173 280 SQVKALYVKNIPDNTS----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~t----------e~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g 349 (429)
.++++|.|.|+-.... +++|++.|++||.|.+|.|.++. .+|||||+|.+.++|.+|+..|||+.|+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568999999853322 26889999999999999997764 37999999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 014173 350 QVLEVVLAKPQ 360 (429)
Q Consensus 350 ~~l~v~~a~~~ 360 (429)
|.|+|.|+...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998643
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.9e-12 Score=117.72 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=66.4
Q ss_pred cccceEEEcc--CCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeC---Ce--EE
Q 014173 280 SQVKALYVKN--IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID---GQ--VL 352 (429)
Q Consensus 280 ~~~~~l~v~n--lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~---g~--~l 352 (429)
.++++|||+| |+..+|+++|+++|++||.|..|.|++. ||||||+|.+.++|.+|++.|||..+- |+ .|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 5568999999 5789999999999999999999999764 499999999999999999999999772 44 68
Q ss_pred EEEecc
Q 014173 353 EVVLAK 358 (429)
Q Consensus 353 ~v~~a~ 358 (429)
.|.|+.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 888885
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.7e-12 Score=93.86 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=63.2
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 106 GSEVFIGGLP-------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 106 ~~~l~v~nLp-------~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
..+|.|.-.+ ..+++++|+++|++||.|..|+|+ ++++|||||+|.+.++|.+|+..+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3466666554 468999999999999999999997 36799999999999999999987544 679999
Q ss_pred EEeecCCcc
Q 014173 179 RCSLSETKN 187 (429)
Q Consensus 179 ~v~~~~~~~ 187 (429)
+|.++.+..
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987653
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=9.2e-12 Score=94.73 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=67.1
Q ss_pred CCCCCEEEEcCCCC--CC--------CHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 014173 103 PPNGSEVFIGGLPK--DA--------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (429)
Q Consensus 103 ~~~~~~l~v~nLp~--~~--------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 172 (429)
+.++++|.|.|+=. +. .+++|++.|++||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45678999999832 21 234789999999999999987653 58999999999999999999999999
Q ss_pred cCCceEEEeecCC
Q 014173 173 LKGKTIRCSLSET 185 (429)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (429)
+.||.|+|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999863
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.1e-12 Score=114.36 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=67.4
Q ss_pred cCCCCCCCEEEEcC--CCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC---
Q 014173 100 LALPPNGSEVFIGG--LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--- 174 (429)
Q Consensus 100 ~~~~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~--- 174 (429)
.....++.+|||+| |++.+|+++|+++|++||.|.+|++.. +||||||+|.+.++|++|++.|||..+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 33456788999999 578999999999999999999988753 4799999999999999999999999873
Q ss_pred Cc--eEEEeecC
Q 014173 175 GK--TIRCSLSE 184 (429)
Q Consensus 175 g~--~l~v~~~~ 184 (429)
|+ .|.|.+..
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 45 57777764
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=3e-11 Score=85.54 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=63.0
Q ss_pred ccceEEEccCC----CCCCH----HHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 014173 281 QVKALYVKNIP----DNTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (429)
Q Consensus 281 ~~~~l~v~nlp----~~~te----~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l 352 (429)
+.-+|+|.-++ ..+-. .+|.+.|++||.|..|+|..++ +||+|.+.++|.+|+. |||..++||.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 34578888776 23333 6789999999999999999876 8999999999999998 99999999999
Q ss_pred EEEeccCC
Q 014173 353 EVVLAKPQ 360 (429)
Q Consensus 353 ~v~~a~~~ 360 (429)
+|+++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.8e-11 Score=91.15 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=68.6
Q ss_pred cccceEEEccCCCC-CCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCC-HHHHHHHHHHhC--CceeCCeEEEEE
Q 014173 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE-RSSALKAVKDTE--KYEIDGQVLEVV 355 (429)
Q Consensus 280 ~~~~~l~v~nlp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~-~~~A~~A~~~l~--~~~~~g~~l~v~ 355 (429)
.....|+|+||+.. ++.++|+++|++||.|..|.+.++. ..|||.|.+ ..+|..|+..|+ +..|+|..+++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 55689999999999 9999999999999999999999988 579999999 899999999995 778999999998
Q ss_pred ecc
Q 014173 356 LAK 358 (429)
Q Consensus 356 ~a~ 358 (429)
+..
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.4e-10 Score=88.06 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecC-HHHHHHHHHHhc--CCccCCceE
Q 014173 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS-KEFAKKAIDELH--SKELKGKTI 178 (429)
Q Consensus 103 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--~~~~~g~~l 178 (429)
-+.++.|+|+||++. ++.++|+++|++||.|..|.+.++.. .|||.|.+ ..+|..|+..|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 357899999999999 99999999999999999999988754 59999999 899999999985 778899888
Q ss_pred EEeecC
Q 014173 179 RCSLSE 184 (429)
Q Consensus 179 ~v~~~~ 184 (429)
.+....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1e-10 Score=82.80 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=63.2
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 014173 104 PNGSEVFIGGLPK----DASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (429)
Q Consensus 104 ~~~~~l~v~nLp~----~~t~----~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 175 (429)
++..||+|.-+|. .+-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|++ |+|..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 5667899988872 3333 5788999999999999998863 8999999999999997 99999999
Q ss_pred ceEEEeecCC
Q 014173 176 KTIRCSLSET 185 (429)
Q Consensus 176 ~~l~v~~~~~ 185 (429)
|.|+|.++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999875
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2e-10 Score=81.64 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=62.8
Q ss_pred cccceEEEccCCCC-----CCH----HHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 014173 280 SQVKALYVKNIPDN-----TST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (429)
Q Consensus 280 ~~~~~l~v~nlp~~-----~te----~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~ 350 (429)
++.-+|+|.-++.. +-. .+|.+.|++||.|..|+|..++ +||+|.+.++|.+||. |+|..++||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 34468999988743 322 5689999999999999999887 9999999999999999 999999999
Q ss_pred EEEEEeccC
Q 014173 351 VLEVVLAKP 359 (429)
Q Consensus 351 ~l~v~~a~~ 359 (429)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998764
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=8.3e-10 Score=78.45 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=63.7
Q ss_pred CCCCCCCEEEEcCCCCC-----CCH----HHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 014173 101 ALPPNGSEVFIGGLPKD-----ASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (429)
Q Consensus 101 ~~~~~~~~l~v~nLp~~-----~t~----~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 171 (429)
.--++..||+|.-++.. +-. .+|.+.|.+||.|..++++.+. +||+|.+.++|.+|++ |+|.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34467789999998743 322 4688999999999999998873 9999999999999997 9999
Q ss_pred ccCCceEEEeecC
Q 014173 172 ELKGKTIRCSLSE 184 (429)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (429)
.+.||.|+|.+..
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998754
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=8.3e-09 Score=74.60 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=67.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcc-----CCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
.++|-|-|||..++...|+.+..++ |.|+.|.+.++..| |+|+|.+...|.+|..+|+|..|.|+.|+|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G----Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG----AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE----EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc----eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5799999999999999999999999 99999999999954 99999999999999999999999999999854
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.84 E-value=1.5e-08 Score=87.64 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCC-----CCCCHHHHHHhhccCCCeEEEEEeecCC----CCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 014173 102 LPPNGSEVFIGGLP-----KDASEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (429)
Q Consensus 102 ~~~~~~~l~v~nLp-----~~~t~~~l~~~f~~~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 172 (429)
.....+.+.+.|+- ..-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..|+|..
T Consensus 120 ~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 120 SAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp SCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 34455667776663 2345678999999999999999986543 45899999999999999999999999999
Q ss_pred cCCceEEEeecCC
Q 014173 173 LKGKTIRCSLSET 185 (429)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (429)
+.||.|.|.+...
T Consensus 200 ~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 200 FAGRKVVAEVYDQ 212 (222)
T ss_dssp SSSSBCEEEECCH
T ss_pred ECCeEEEEEEcCH
Confidence 9999999998763
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=3.7e-09 Score=91.51 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHhccCCeeEEEecCCCCC-----C-CcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 014173 293 NTSTEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (429)
Q Consensus 293 ~~te~~L~~~F~~~G~i~~v~i~~~~~~-----~-kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 359 (429)
.-.+++|++.|++||.|.+|.|+++..+ . +|++||+|.+.++|.+|+..|||+.|+||.|+|.|...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3456889999999999999999754432 4 89999999999999999999999999999999999764
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=4.6e-07 Score=65.58 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC-----CCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEE
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (429)
..++|-|-|||..++...|+.++..+ |.|..|.+..+- +=|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 999999998874 3599999999999999989999999999999
Q ss_pred Eee
Q 014173 180 CSL 182 (429)
Q Consensus 180 v~~ 182 (429)
|..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.1e-05 Score=56.57 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc-----CCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceE
Q 014173 104 PNGSEVFIGGLPKDASEEDLRDLCEP-----IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (429)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~-----~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 178 (429)
....+|.|.|||+.+.++.|.-+|+. =|.|..|.... +.|+|.|.+...|++.|+. ....|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 35678999999999999999999976 25898888754 3699999999999999953 4778999999
Q ss_pred EEeecCC--cccccccCCCCCCC
Q 014173 179 RCSLSET--KNRLFIGNVPKNWT 199 (429)
Q Consensus 179 ~v~~~~~--~~~l~v~nl~~~~t 199 (429)
.|....+ ..++++.+|++.++
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9987654 47899999988764
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=6.2e-05 Score=54.18 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=63.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhc---c--CCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQR---H--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~---~--G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~ 355 (429)
..++|.|.|||..++++.|.-+|++ . |.|..|.... +-|+|+|.+...|.+++.+ ..+.|++.+|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 3479999999999999999999987 2 4888998766 2499999999999999984 4789999999997
Q ss_pred eccCCCCC
Q 014173 356 LAKPQTDK 363 (429)
Q Consensus 356 ~a~~~~~~ 363 (429)
-..+....
T Consensus 80 P~~~~~~~ 87 (104)
T 2dhx_A 80 PAPPRAPA 87 (104)
T ss_dssp ECCCCCCC
T ss_pred cCCCCCcc
Confidence 76555443
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=3e-05 Score=56.16 Aligned_cols=75 Identities=20% Similarity=0.142 Sum_probs=63.7
Q ss_pred cceEEEccCCCCC-CH----HHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 014173 282 VKALYVKNIPDNT-ST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (429)
Q Consensus 282 ~~~l~v~nlp~~~-te----~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~ 356 (429)
.++|+|.||+..+ .. +.++.+|..|+.+......+.- .-..|.|.+.++|.+|...|++..|.|+.|+|-|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3689999998655 22 5789999999988888776655 3489999999999999999999999999999999
Q ss_pred ccCC
Q 014173 357 AKPQ 360 (429)
Q Consensus 357 a~~~ 360 (429)
+.+-
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9844
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=2.5e-05 Score=56.55 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEE
Q 014173 106 GSEVFIGGLPKDA-S----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (429)
Q Consensus 106 ~~~l~v~nLp~~~-t----~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (429)
.++|+|.||+..+ . .+.++.+|..|+++......+... -..|.|.+.++|.+|...|++..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998865 2 357789999999998888877643 4799999999999999999999999999999
Q ss_pred eecCC
Q 014173 181 SLSET 185 (429)
Q Consensus 181 ~~~~~ 185 (429)
.++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.78 E-value=8.8e-05 Score=52.86 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=56.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCC--ceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~--~~g~afV~f~~~~~a~~a~~~l~~~~~~g 175 (429)
+.|.||+||+.+|++++.+.+..+..+.....+..+.+.. ...-|||.|.+.+++......++|..+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4699999999999999999999998887777766543322 23459999999999999999999987643
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.60 E-value=0.00027 Score=50.31 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=61.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC----CcEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLE 353 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~l~~~~~~g-----~~l~ 353 (429)
.+|.|++||+.+|++++.+.++....+.......++... -.-|||.|.+.+++..-...++|+.|-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 479999999999999999999998888777776555321 4569999999999999999999997732 2345
Q ss_pred EEeccC
Q 014173 354 VVLAKP 359 (429)
Q Consensus 354 v~~a~~ 359 (429)
|.+|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666653
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.59 E-value=0.00028 Score=50.11 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=47.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 014173 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (429)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 169 (429)
.+...+.++| ++|+.+...||.++|+.||.| .|+-+-+- .|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3445567777 999999999999999999954 44444442 69999999999999998664
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=0.00033 Score=52.24 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=59.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEecc
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-QVLEVVLAK 358 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g-~~l~v~~a~ 358 (429)
...+.|.|-+.|... ...|...|++||.|.+...... ..+..|.|.+..+|.+||. .||..|+| ..|=|....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 445789999999875 5667789999999999887333 3799999999999999999 49999985 566666643
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0017 Score=48.37 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCc-eEEEeec
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIRCSLS 183 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~ 183 (429)
..+-|.|-+.|+.. ...|..+|++||.|++..... ...+..|.|.+..+|++|| ..||..|.|. -|=|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 45789999999996 557888999999999888732 2348999999999999999 5699998754 4555554
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00064 Score=48.63 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=50.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHHhcCCccC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 174 (429)
+-.|.||.||+.+|++++.+.+..+-.+.....+.-..+. ..-.-|||.|.+.++.....+..+|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3469999999999999999888876555433333222211 11234999999999999999999998764
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.03 E-value=0.0014 Score=46.53 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=44.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~ 343 (429)
..++| +.|+.+...+|.++|++||.| .|+-+.+. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 56666 999999999999999999843 34444443 79999999999999999764
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.97 E-value=0.0015 Score=46.62 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=44.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 014173 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (429)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 169 (429)
+.++| ++|+.+...||..+|+.||.| .|+-+-+- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999943 45544442 69999999999999998764
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.95 E-value=0.001 Score=47.39 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=45.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 014173 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (429)
Q Consensus 283 ~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~ 343 (429)
..++| +.|+.+...+|.++|++||. ..|.-+.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45667 99999999999999999983 345555554 79999999999999999875
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.94 E-value=0.0034 Score=44.90 Aligned_cols=78 Identities=10% Similarity=0.113 Sum_probs=58.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCC----CcEEEEEeCCHHHHHHHHHHhCCceeCC-----eE
Q 014173 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG-----QV 351 (429)
Q Consensus 281 ~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~----kg~afV~F~~~~~A~~A~~~l~~~~~~g-----~~ 351 (429)
.+-+|.|+.||+.+|++++.+.++..-.+.......++... -.-|||.|.+.++...-...++|+.|-+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 34689999999999999998888876555544454444221 2458999999999999999999997732 24
Q ss_pred EEEEecc
Q 014173 352 LEVVLAK 358 (429)
Q Consensus 352 l~v~~a~ 358 (429)
..|.+|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566664
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.33 E-value=0.0063 Score=46.00 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=55.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeE-EEecCCC-------------CC--CCcEEEEEeCCHHHHHHHHHHhCCc
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGK-------------SG--KRDFGFIHYAERSSALKAVKDTEKY 345 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~-v~i~~~~-------------~~--~kg~afV~F~~~~~A~~A~~~l~~~ 345 (429)
...|.|-+.|...+.. |.+.|++||.|.. +.+.+.. .. ...+..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3578889998666554 6678999999876 3332211 00 13688999999999999999 4999
Q ss_pred eeCCeEEEEEeccC
Q 014173 346 EIDGQVLEVVLAKP 359 (429)
Q Consensus 346 ~~~g~~l~v~~a~~ 359 (429)
.|+|..|=|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999887776653
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.62 E-value=0.0057 Score=57.56 Aligned_cols=56 Identities=9% Similarity=0.248 Sum_probs=43.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
.++|+|. .|..+++.+|.++|++||.|.++.+..+.. -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 4789997 799999999999999999999999987552 5999999999999877653
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.60 E-value=0.0078 Score=45.51 Aligned_cols=78 Identities=9% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEE-Eeec------------CCCC-CceeEEEEEecCHHHHHHHHHHhcC
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMKD------------KESG-ESKGFAFVSFRSKEFAKKAIDELHS 170 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~-~~~~------------~~~~-~~~g~afV~f~~~~~a~~a~~~l~~ 170 (429)
..+.|.|-+.|+..+. .+...|++||.|.+-. +.+. +... ....+..|+|.+..+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 3467888899887765 6667999999986621 1110 0000 12457899999999999999 5699
Q ss_pred CccCCceEEEeecC
Q 014173 171 KELKGKTIRCSLSE 184 (429)
Q Consensus 171 ~~~~g~~l~v~~~~ 184 (429)
..|.|.-|=|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877777664
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.53 E-value=0.0065 Score=57.18 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 166 (429)
.++|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4889998 79999999999999999999999987653 2699999999999997774
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.28 E-value=1.6 Score=41.84 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCC
Q 014173 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (429)
Q Consensus 282 ~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~ 344 (429)
...++|+ +|..+...+|.++|+.||. ..|+.+.+. .|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-----eEEEEECCHHHHHHHHHHHHh
Confidence 3566666 9999999999999999995 456655554 799999999999999998853
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.97 E-value=1.6 Score=42.00 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=44.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 014173 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (429)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 170 (429)
...++|+ +|..+...+|.++|+.||.| .|+.+-+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3466666 99999999999999999954 4443332 3699999999999999988753
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=72.12 E-value=21 Score=24.48 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=51.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCc-------eeCCeEE
Q 014173 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY-------EIDGQVL 352 (429)
Q Consensus 280 ~~~~~l~v~nlp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~-------~~~g~~l 352 (429)
...+-|.|-|+|..+-..++--.....|---.+..+. |.|.|.|.+.++...|+..|-++ .+.|..+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 4457789999999998888877777777656665554 56999999999999999877332 3455555
Q ss_pred EE
Q 014173 353 EV 354 (429)
Q Consensus 353 ~v 354 (429)
.|
T Consensus 84 dv 85 (129)
T 4eyt_A 84 DV 85 (129)
T ss_dssp EE
T ss_pred ee
Confidence 55
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=71.47 E-value=15 Score=24.46 Aligned_cols=60 Identities=8% Similarity=0.168 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHhccC-----CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 014173 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (429)
Q Consensus 292 ~~~te~~L~~~F~~~G-----~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 358 (429)
..+...+|..++..-+ .|-.|.|.. .|.||+-.. ..|..++..|++..+.|+.++|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4566667777666544 456777754 368998855 57888999999999999999998764
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=65.25 E-value=7.7 Score=30.78 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=37.8
Q ss_pred ceEEEccCCC-C--------CCHHHHHHHH--hccCCeeEEEecCCCCCCCcEEEEEeCCHHH
Q 014173 283 KALYVKNIPD-N--------TSTEKIKELF--QRHGEVTKVVMPPGKSGKRDFGFIHYAERSS 334 (429)
Q Consensus 283 ~~l~v~nlp~-~--------~te~~L~~~F--~~~G~i~~v~i~~~~~~~kg~afV~F~~~~~ 334 (429)
..+.|-|+|. . .+...|++.| +.|..+. |+.+.+..+.+|++.|.|.+.-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChH
Confidence 4678889886 2 3447899977 8897654 66666776778999999986443
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=61.59 E-value=21 Score=23.67 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=41.0
Q ss_pred EEEEcCC-CCCCCHHHHHHhhccCC-----CeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEe
Q 014173 108 EVFIGGL-PKDASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (429)
Q Consensus 108 ~l~v~nL-p~~~t~~~l~~~f~~~G-----~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (429)
+|||..= -..+...+|..++..-+ .|-.|.+..+ |.||+-... .|..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4555322 23467777777776543 4667776433 688887754 4667888889999999999887
Q ss_pred ecC
Q 014173 182 LSE 184 (429)
Q Consensus 182 ~~~ 184 (429)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 407
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=59.11 E-value=2 Score=39.23 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHhc
Q 014173 293 NTSTEKIKELFQR 305 (429)
Q Consensus 293 ~~te~~L~~~F~~ 305 (429)
.+++++|+.+...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4677777776654
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.52 E-value=27 Score=24.09 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=41.4
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
.-++-.+....+..+|++.++. |+ .|..|..+..+.+. --|||++..-.+|......+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~-KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE-KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC-EEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc-eEEEEEcCCCCcHHHHHHhh
Confidence 4566667778999999999987 77 67777655443332 34999999888877766543
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.48 E-value=39 Score=26.74 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=35.8
Q ss_pred EEEEcCCCC-C--------CCHHHHHHhh--ccCCCeEEEEEeecCCCCCceeEEEEEecCHH
Q 014173 108 EVFIGGLPK-D--------ASEEDLRDLC--EPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159 (429)
Q Consensus 108 ~l~v~nLp~-~--------~t~~~l~~~f--~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~ 159 (429)
++.|-|+|. . .....|++.| +.|.++. |+.+..+ .-++|+|.|.|.+--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 467788887 2 3457899977 9998865 5555554 347899999999863
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.31 E-value=55 Score=22.49 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=38.6
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHH
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~ 340 (429)
.-|+-.+...++..+|++.++. |+ .|..|.....+.+ .--|||++..-.+|.....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~-~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG-EKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-SEEEEEEECTTSCHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCC-ceEEEEEECCCCcHHHHHH
Confidence 4556667789999999998887 67 6777755443322 2359999987766655443
No 411
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=35.90 E-value=7 Score=38.37 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 014173 159 EFAKKAI 165 (429)
Q Consensus 159 ~~a~~a~ 165 (429)
+-+.+.+
T Consensus 416 ~~~~~Fl 422 (649)
T 3tj1_A 416 ELMDSFL 422 (649)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=35.86 E-value=1e+02 Score=21.04 Aligned_cols=68 Identities=15% Similarity=0.286 Sum_probs=50.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCceEEEee
Q 014173 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (429)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (429)
..+-|.|-|+|..+-..++.-.....|--..|..+ -|.|.|.|.+.+....|+..|-+. .+.+|.+..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 56889999999999999988777777755555543 346999999999999999776432 244555544
No 413
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=34.31 E-value=72 Score=24.55 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=40.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
.-++--+....+..+|++.++. |+ .|..|..+....+. --|||.+..-.+|......+
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~-KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN-KKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC-EEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-EEEEEEcCCCCcHHHHHHhh
Confidence 3555566778899999988887 66 67777655444332 24999998777777665543
No 414
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=33.56 E-value=73 Score=24.28 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=40.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHh
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l 342 (429)
.-++--+....+..+|++.++. |+ .|..|..+....+. --|||.+..-.+|......+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT-KKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC-EEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-eEEEEEeCCCCcHHHHHHhh
Confidence 3555666778999999988887 66 67777655444332 24999998777777665443
No 415
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=26.37 E-value=77 Score=24.45 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=38.8
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
..|+--+....+..+|++.++. |+ .|..|..+....+. --|||.+..-.+|......
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGK-KKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc-eEEEEEcCCCCcHHHHHHh
Confidence 3455556678889999988877 66 67777654443332 2499999887777766543
No 416
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.98 E-value=1.4e+02 Score=23.22 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=39.1
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-cC-CeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 014173 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (429)
Q Consensus 284 ~l~v~nlp~~~te~~L~~~F~~-~G-~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~ 341 (429)
..|+--+....+..+|++.++. |+ .|..|..+.-..+. --|||++..-.+|......
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~-KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE-KKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSC-EEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 3556666778999999998887 66 67777655444332 3499999877666555543
No 417
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.22 E-value=48 Score=21.38 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=12.7
Q ss_pred CCeeEEEecCCCCCCCcEEEEEeCC
Q 014173 307 GEVTKVVMPPGKSGKRDFGFIHYAE 331 (429)
Q Consensus 307 G~i~~v~i~~~~~~~kg~afV~F~~ 331 (429)
|+|+.|... +..|||.|.+
T Consensus 28 GtV~kV~~~------~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSA------REVCLVQFED 46 (68)
T ss_dssp EEEEEEETT------TTEEEEEETT
T ss_pred eEEEEEecC------CcEEEEEEcc
Confidence 456666533 2679999976
No 418
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.57 E-value=2.2e+02 Score=20.12 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=47.2
Q ss_pred EEEccCCCCCCHHHHHHHHh-ccCCeeEEEecCCCCCCCcEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccCC
Q 014173 285 LYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (429)
Q Consensus 285 l~v~nlp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~~kg~afV~F~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 360 (429)
-+|-.++..+.-++|..-.. .||.-.+++.... -..|-..+.++-.+|++.|+-. -.-+.|+|-+..++
T Consensus 19 kRIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 19 KRILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHSSCEEEEECSS------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEEEeccCCccHHHHHHHHHHHhCCeeeEEEecc------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 34445677888888876554 4888777777633 2688889999999999987633 34455566555544
No 419
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.86 E-value=52 Score=21.88 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=13.2
Q ss_pred CCeeEEEecCCCCCCCcEEEEEeCC
Q 014173 307 GEVTKVVMPPGKSGKRDFGFIHYAE 331 (429)
Q Consensus 307 G~i~~v~i~~~~~~~kg~afV~F~~ 331 (429)
|+|+.|.... ..|+|.|.+
T Consensus 45 GTI~kV~~~~------e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVDSAR------EVCLVQFED 63 (79)
T ss_dssp EEEEEEETTT------TEEEEEETT
T ss_pred EEEEEeccCC------CEEEEEEcC
Confidence 5666665543 569999976
No 420
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.48 E-value=1.5e+02 Score=20.37 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.1
Q ss_pred CeEEEEEeecCCCCCceeEEEEEec
Q 014173 132 DVFEVRLMKDKESGESKGFAFVSFR 156 (429)
Q Consensus 132 ~i~~v~~~~~~~~~~~~g~afV~f~ 156 (429)
.|..|++.+-...|+-++||=|.|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5788888877666899999999996
Done!