BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014178
         (429 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8L5T9|CYT2_ARATH Cysteine proteinase inhibitor 2 OS=Arabidopsis thaliana GN=CYS2
           PE=2 SV=2
          Length = 147

 Score = 33.9 bits (76), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 184 ILVPKFSDDFRFAKT---SSGVAGLQLSRWREEFAVSELEKSNEKS--EMGNEYRQFKSG 238
           ++ P  ++ FR +      SGV  ++ +R  ++     +E+ N+++  E GN     K+ 
Sbjct: 21  VVTPSAANPFRKSVVLGGKSGVPNIRTNREIQQLGRYCVEQFNQQAQNEQGNIGSIAKT- 79

Query: 239 QTALAFPMNFPRGYGAQKKVRAWMDEFQKLPYISPYDDSRNID 281
            TA++ P+ F R   AQK+V A +  + ++    P   +R  D
Sbjct: 80  DTAISNPLQFSRVVSAQKQVVAGLKYYLRIEVTQPNGSTRMFD 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,854,386
Number of Sequences: 539616
Number of extensions: 6603496
Number of successful extensions: 24364
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 24346
Number of HSP's gapped (non-prelim): 13
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)