Query 014178
Match_columns 429
No_of_seqs 135 out of 186
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:36:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 1E-117 3E-122 892.1 29.8 333 46-382 1-334 (335)
2 PF11955 PORR: Plant organelle 98.8 3.9E-09 8.5E-14 107.5 4.2 140 56-198 94-293 (335)
3 PLN03196 MOC1-like protein; Pr 80.5 0.5 1.1E-05 50.9 -0.1 50 290-342 324-374 (487)
4 PLN03196 MOC1-like protein; Pr 74.6 1.3 2.7E-05 47.9 0.8 53 290-347 359-414 (487)
5 TIGR02337 HpaR homoprotocatech 48.7 1.4E+02 0.003 25.4 8.5 76 68-149 33-112 (118)
6 PHA01746 hypothetical protein 35.0 12 0.00027 33.2 -0.1 57 56-112 16-90 (131)
7 PRK10870 transcriptional repre 31.1 2.1E+02 0.0045 26.6 7.4 68 69-140 61-132 (176)
8 PF12872 OST-HTH: OST-HTH/LOTU 29.9 50 0.0011 25.6 2.6 50 65-114 7-66 (74)
9 PF04340 DUF484: Protein of un 22.6 68 0.0015 30.8 2.6 44 96-142 9-61 (225)
10 smart00347 HTH_MARR helix_turn 21.2 3.9E+02 0.0086 20.9 6.5 76 66-147 13-92 (101)
11 PF13601 HTH_34: Winged helix 20.6 3.1E+02 0.0068 22.3 5.8 67 68-141 5-77 (80)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=1.4e-117 Score=892.11 Aligned_cols=333 Identities=44% Similarity=0.747 Sum_probs=319.6
Q ss_pred cccccchhhHHhhccchhHHHHHHHHHHhCCCCeeehhchhhhcccCCCc-chhhhhhhhCCCceeeccCCCCCCCCcee
Q 014178 46 WVKNRGLDHIIDTDTDLKAACLLKDAIKRSSTGFLTANSVSDWHKLLGLT-VPVIRFLRRYPTLFHEFPHSRYANLPCFR 124 (429)
Q Consensus 46 w~rd~~LD~~i~r~k~lr~v~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~~~~~FLrkyP~iF~~~~~~~~~~~p~~r 124 (429)
|+||++||++|+++|+++++++|+++|+++|+++||+++|+++++.||++ +++++||+|||+||++|.|+.. ++|||+
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~-~~~~~~ 79 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSR-SVPWFR 79 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCC-CCceEE
Confidence 99999999999999999999999999999999999999999999999997 9999999999999999998655 889999
Q ss_pred cCHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccCCCcccccchHhhhhhcCCCchhhhcccCCCCCCeEEEecCCCccc
Q 014178 125 LTDTALLLDSLEQKIHLTYENDTMERLCSVLMMMRTRTAPLQSLHSLKWDLGLPDNFEKILVPKFSDDFRFAKTSSGVAG 204 (429)
Q Consensus 125 LT~~a~~L~~eE~~v~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~~g~~~ 204 (429)
|||+|++|++||++|++++++++|++|+||||||.+++|||++|++++||||||+||+++++++|||+|+||+..+|..+
T Consensus 80 LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~ 159 (335)
T PF11955_consen 80 LTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRY 159 (335)
T ss_pred eCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997789999
Q ss_pred EEeeecCCCcccchhhhhhhhccccchhhhccCCCcccceeecCCCCCccchHHHHHHHHhhcCCCCCCCCCCCCCCCCC
Q 014178 205 LQLSRWREEFAVSELEKSNEKSEMGNEYRQFKSGQTALAFPMNFPRGYGAQKKVRAWMDEFQKLPYISPYDDSRNIDPNS 284 (429)
Q Consensus 205 LeLv~Wd~eLAVS~lEk~~~~~~~~~~~~~~~~~~~~~~Fp~~fp~Gf~l~kk~~~~l~~fQ~LPYiSPYed~~~l~~~S 284 (429)
||||+|||+||||++|++++.+. ++....+..++++|||+||+||++++++++|+++||+|||+|||+|+++++++|
T Consensus 160 LeLv~Wd~~LAvs~~E~~~~~~~---~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s 236 (335)
T PF11955_consen 160 LELVSWDPELAVSALEKRAEKEY---REKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGS 236 (335)
T ss_pred EEEeecCCccCcCccchhhhhcc---ccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCC
Confidence 99999999999999999999731 111113447899999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhcccchhhhhhHHHhhhhhhCCchHHHHHHhhCCCeEEEEeeCCeeEEEEeeccCCCCCccCCch
Q 014178 285 ELMEKRAVGILHEFLSLTIHKKTKRNYLRSLREELNLPHKFTRLFTRYPGIFYLSLKCKTTTVTLKEGYQRGKLVNPHPL 364 (429)
Q Consensus 285 ~e~EKRaVaVlHELLSLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~Kg~~~TVfLREAY~~g~Liek~PL 364 (429)
+++|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+|||||||
T Consensus 237 ~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~Pl 316 (335)
T PF11955_consen 237 DEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKHPL 316 (335)
T ss_pred hHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhh
Q 014178 365 VNLRKKFYHVMRMGLLYR 382 (429)
Q Consensus 365 ~~~R~K~~~Lm~~~~~~r 382 (429)
+.+|+||++||..|..+|
T Consensus 317 ~~~r~k~~~Lm~~~~~~~ 334 (335)
T PF11955_consen 317 VVIREKFLELMQEGRRKR 334 (335)
T ss_pred HHHHHHHHHHHhhccccc
Confidence 999999999999997766
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=98.78 E-value=3.9e-09 Score=107.46 Aligned_cols=140 Identities=15% Similarity=0.213 Sum_probs=106.7
Q ss_pred HhhccchhHHHHHHHHHHhCCCCeeehhchhhhcccCCCc-chhhhhhhhCCCceeeccCCCCCCCCceecCH-------
Q 014178 56 IDTDTDLKAACLLKDAIKRSSTGFLTANSVSDWHKLLGLT-VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTD------- 127 (429)
Q Consensus 56 i~r~k~lr~v~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~------- 127 (429)
+-.+.....|.+|+.+|.-+.+++||++.+..++..|||| .-..+++.+||..|.+.....+ .+++.|..
T Consensus 94 ~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~--~~~LeLv~Wd~~LAv 171 (335)
T PF11955_consen 94 VREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDG--GRYLELVSWDPELAV 171 (335)
T ss_pred HHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCC--CCEEEEeecCCccCc
Confidence 4444557789999999999999999999999999999999 4556789999999999762211 11222211
Q ss_pred ------------------------------HHHHHHHHHHHHH----------------------hhchhhHHHHHHHHH
Q 014178 128 ------------------------------TALLLDSLEQKIH----------------------LTYENDTMERLCSVL 155 (429)
Q Consensus 128 ------------------------------~a~~L~~eE~~v~----------------------~~~e~~~v~rLrKLL 155 (429)
.+-.+...-.+-+ .+.|..+|..++-||
T Consensus 172 s~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElL 251 (335)
T PF11955_consen 172 SALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELL 251 (335)
T ss_pred CccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHH
Confidence 1111111111111 234677899999999
Q ss_pred hccCCCcccccchHhhhhhcCCCchhhhcccCCCCCCeEEEec
Q 014178 156 MMMRTRTAPLQSLHSLKWDLGLPDNFEKILVPKFSDDFRFAKT 198 (429)
Q Consensus 156 MMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~ 198 (429)
.|+..+++.+++|.|++.+||||.+|.. ++-+||+.|.|..-
T Consensus 252 SLTveKr~~~~~L~~fr~ef~lp~k~~~-~l~rHPgIFYvS~k 293 (335)
T PF11955_consen 252 SLTVEKRTEVDHLTHFRKEFGLPQKFRR-LLLRHPGIFYVSLK 293 (335)
T ss_pred HhhhhhhccHHHHHHHHHHhCCcHHHHH-HHHhCCCeEEEecc
Confidence 9999999999999999999999999998 88889999999864
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=80.48 E-value=0.5 Score=50.94 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcccchhhhhhHHHhhhhhhCCch-HHHHHHhhCCCeEEEEeeC
Q 014178 290 RAVGILHEFLSLTIHKKTKRNYLRSLREELNLPH-KFTRLFTRYPGIFYLSLKC 342 (429)
Q Consensus 290 RaVaVlHELLSLTveKr~~~~~L~~fr~efgLp~-k~~~~l~rHPgIFYvS~Kg 342 (429)
++|.-+-.+|++..+| -..++..|++ +|++. .+..|+.++|.++-.|.+.
T Consensus 324 ~~v~k~P~il~lSe~k--l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~ 374 (487)
T PLN03196 324 RVIEKLPQIVSLNRNV--ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEI 374 (487)
T ss_pred HHHHhcchhhcccHHH--HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHH
Confidence 4566667888888764 3467777875 99984 5788999999999999853
No 4
>PLN03196 MOC1-like protein; Provisional
Probab=74.57 E-value=1.3 Score=47.95 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcccchhhhhhHHHhhhhhhCCchHHHHHHhhCCCeEEEEeeCC---eeEE
Q 014178 290 RAVGILHEFLSLTIHKKTKRNYLRSLREELNLPHKFTRLFTRYPGIFYLSLKCK---TTTV 347 (429)
Q Consensus 290 RaVaVlHELLSLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~Kg~---~~TV 347 (429)
++|.-.=-+|++.+ ..-..++.-|.+++|+| .+.+.++|.+|-.|+... ||.|
T Consensus 359 ~mv~k~P~lL~~S~--~~l~~k~dFlvneMg~~---~~~Iv~fP~~LsySLEkRI~PR~~~ 414 (487)
T PLN03196 359 KMVVRCPQILALNL--EIMKPSLEFFKKEMKRP---LKELVEFPAYFTYGLESRIKPRYER 414 (487)
T ss_pred HHHHhCCceeeccH--HHHHHHHHHHHHHhCCC---HHHHHhChHHhccChhhhhHHHHHH
Confidence 34444446777777 44568999999999999 566899999999998643 4654
No 5
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=48.68 E-value=1.4e+02 Score=25.39 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHhhc
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHLTY 143 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~~ 143 (429)
+...|...| .+++.++++ .+|+. .+++.=|.+- ++-+-..+|..+....+.||++|.++..+=..+..+.
T Consensus 33 iL~~l~~~~--~~t~~ela~---~~~~~~~tvs~~l~~Le~~-GlI~r~~~~~D~R~~~v~LT~~G~~~~~~~~~~~~~~ 106 (118)
T TIGR02337 33 ILRILAEQG--SMEFTQLAN---QACILRPSLTGILARLERD-GLVTRLKASNDQRRVYISLTPKGQALYASLSPQIEEI 106 (118)
T ss_pred HHHHHHHcC--CcCHHHHHH---HhCCCchhHHHHHHHHHHC-CCEEeccCCCCCCeeEEEECHhHHHHHHHhhHHHHHH
Confidence 444455554 467777766 67776 2333333343 4444445555545568999999999999877766655
Q ss_pred hhhHHH
Q 014178 144 ENDTME 149 (429)
Q Consensus 144 e~~~v~ 149 (429)
...+..
T Consensus 107 ~~~~~~ 112 (118)
T TIGR02337 107 YAAIEE 112 (118)
T ss_pred HHHHHH
Confidence 555444
No 6
>PHA01746 hypothetical protein
Probab=35.01 E-value=12 Score=33.24 Aligned_cols=57 Identities=18% Similarity=0.378 Sum_probs=40.4
Q ss_pred HhhccchhHHHHHHHH------HHhCCCC-----eeehhchhhhcccCCCc-------chhhhhhhhCCCceeec
Q 014178 56 IDTDTDLKAACLLKDA------IKRSSTG-----FLTANSVSDWHKLLGLT-------VPVIRFLRRYPTLFHEF 112 (429)
Q Consensus 56 i~r~k~lr~v~~lk~l------i~~~P~~-----~ipl~~L~k~~~~Lgl~-------~~~~~FLrkyP~iF~~~ 112 (429)
.+..+-...+++||.+ |-+.|+. +|++..-+.+++++|++ .-++.||.||-.....|
T Consensus 16 k~snk~aSkIlkIKg~~rivlQiNAvP~dg~vr~SMTiHs~nNfkKQIGiTa~DAgdL~lIa~FLeKYS~~LnkY 90 (131)
T PHA01746 16 KESNKIASRILKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAGDLKLIAEFLEKYSDFLNEY 90 (131)
T ss_pred HHcCChHHHHheecCcceEEEEeeccCCCCeeEEEEEEecccchhhhcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 3344444555555543 5577833 68999999999999997 46789999998877654
No 7
>PRK10870 transcriptional repressor MprA; Provisional
Probab=31.14 E-value=2.1e+02 Score=26.58 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=40.6
Q ss_pred HHHHHhCCCCeeehhchhhhcccCCCc-chhhhh---hhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 69 KDAIKRSSTGFLTANSVSDWHKLLGLT-VPVIRF---LRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 69 k~li~~~P~~~ipl~~L~k~~~~Lgl~-~~~~~F---LrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
...|...+++.++..+|++ .+|++ ..+.+. |.+---| +-..+|..+..-++.||++|.+++.+=....
T Consensus 61 L~~L~~~~~~~it~~eLa~---~l~l~~~tvsr~v~rLe~kGlV-~R~~~~~DrR~~~v~LT~~G~~~~~~i~~~~ 132 (176)
T PRK10870 61 LITLESQENHSIQPSELSC---ALGSSRTNATRIADELEKRGWI-ERRESDNDRRCLHLQLTEKGHEFLREVLPPQ 132 (176)
T ss_pred HHHHhcCCCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCE-EecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 3344455667788888876 77887 333332 2222222 2223555555668999999999987744333
No 8
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=29.90 E-value=50 Score=25.62 Aligned_cols=50 Identities=10% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCC--Ceeehhchhhhc----ccCCCc----chhhhhhhhCCCceeeccC
Q 014178 65 ACLLKDAIKRSST--GFLTANSVSDWH----KLLGLT----VPVIRFLRRYPTLFHEFPH 114 (429)
Q Consensus 65 v~~lk~li~~~P~--~~ipl~~L~k~~----~~Lgl~----~~~~~FLrkyP~iF~~~~~ 114 (429)
.-.|.++|.+.++ +.+++..+...- ..+... .++..||+..|.+|++-..
T Consensus 7 ~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i~~~ 66 (74)
T PF12872_consen 7 KKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEIEER 66 (74)
T ss_dssp HHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEEEEE
T ss_pred HHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEEeee
Confidence 3456777756654 489999986541 222222 5789999999999999433
No 9
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=22.62 E-value=68 Score=30.82 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=15.0
Q ss_pred chhhhhhhhCCCceeecc---------CCCCCCCCceecCHHHHHHHHHHHHHHhh
Q 014178 96 VPVIRFLRRYPTLFHEFP---------HSRYANLPCFRLTDTALLLDSLEQKIHLT 142 (429)
Q Consensus 96 ~~~~~FLrkyP~iF~~~~---------~~~~~~~p~~rLT~~a~~L~~eE~~v~~~ 142 (429)
..|.+||++||..|..++ ||.+ + -|+|.+...+.++++-+-++.
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~-~--avSL~erQ~~~LR~~~~~L~~ 61 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELRLPHPSG-G--AVSLVERQLERLRERNRQLEE 61 (225)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcCCCCCCC-C--cccHHHHHHHHHHHHHHHHHH
Confidence 567888998888888753 4432 2 578888888777777665543
No 10
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=21.17 E-value=3.9e+02 Score=20.88 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCCeeehhchhhhcccCCCc-c---hhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 66 CLLKDAIKRSSTGFLTANSVSDWHKLLGLT-V---PVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 66 ~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~---~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
..+..+|...| .+...++.. .++++ . +.+.=|.+. ++...+.++..+..-.+.+|+.+..+..+-...+.
T Consensus 13 ~~il~~l~~~~--~~~~~~la~---~~~~s~~~i~~~l~~L~~~-g~v~~~~~~~~~r~~~~~lT~~g~~~~~~~~~~~~ 86 (101)
T smart00347 13 FLVLRILYEEG--PLSVSELAK---RLGVSPSTVTRVLDRLEKK-GLIRRLPSPEDRRSVLVSLTEEGRELIEELLEARH 86 (101)
T ss_pred HHHHHHHHHcC--CcCHHHHHH---HHCCCchhHHHHHHHHHHC-CCeEecCCCCCCCeEEEEECHhHHHHHHHHHHHHH
Confidence 44555666665 366666654 56776 2 333333333 55554444333333479999999999888666555
Q ss_pred hchhhH
Q 014178 142 TYENDT 147 (429)
Q Consensus 142 ~~e~~~ 147 (429)
.....+
T Consensus 87 ~~~~~~ 92 (101)
T smart00347 87 ETLAEL 92 (101)
T ss_pred HHHHHH
Confidence 444433
No 11
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=20.60 E-value=3.1e+02 Score=22.26 Aligned_cols=67 Identities=16% Similarity=0.052 Sum_probs=34.3
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc-chh---hhhhhhCCC--ceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT-VPV---IRFLRRYPT--LFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~~~---~~FLrkyP~--iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
|..++.. ...+....|.+ .+|++ ..+ +.-|...-- +-..|.+. ++.-|+++|++|.+...+-.+.++
T Consensus 5 Il~~L~~--~~~~~f~~L~~---~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~--~p~t~~~lT~~Gr~~~~~~~~~L~ 77 (80)
T PF13601_consen 5 ILALLYA--NEEATFSELKE---ELGLTDGNLSKHLKKLEEAGYVEVEKEFEGR--RPRTWYSLTDKGREAFERYVAALR 77 (80)
T ss_dssp HHHHHHH--HSEEEHHHHHH---HTT--HHHHHHHHHHHHHTTSEEEEEE-SSS----EEEEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHhh--cCCCCHHHHHH---HhCcCHHHHHHHHHHHHHCCCEEEEEeccCC--CCeEEEEECHHHHHHHHHHHHHHH
Confidence 3344444 33566666654 88998 233 333333322 22334332 133489999999999988666554
Done!