Query 014178
Match_columns 429
No_of_seqs 135 out of 186
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 06:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8x_A SCO5413, possible MARR- 51.0 89 0.003 26.1 9.2 70 67-140 39-112 (147)
2 3eco_A MEPR; mutlidrug efflux 49.6 30 0.001 28.0 5.8 72 66-141 34-109 (139)
3 3bro_A Transcriptional regulat 44.7 44 0.0015 26.9 6.1 72 66-141 37-112 (141)
4 3m66_A Mterf3, mterf domain-co 35.1 11 0.00038 35.3 0.9 30 165-195 42-71 (270)
5 3g3z_A NMB1585, transcriptiona 34.6 1E+02 0.0035 25.0 6.8 69 67-141 35-107 (145)
6 2qvo_A Uncharacterized protein 34.3 60 0.0021 25.2 5.1 63 76-145 27-93 (95)
7 2frh_A SARA, staphylococcal ac 31.8 1.5E+02 0.005 24.0 7.3 71 67-141 41-115 (127)
8 3nqo_A MARR-family transcripti 31.6 55 0.0019 28.6 4.9 71 67-141 45-119 (189)
9 3m66_A Mterf3, mterf domain-co 29.1 24 0.00083 32.9 2.2 43 297-341 138-181 (270)
10 4fx0_A Probable transcriptiona 28.9 45 0.0015 28.1 3.7 69 67-140 37-112 (148)
11 3bja_A Transcriptional regulat 28.7 2.1E+02 0.0071 22.6 7.7 67 68-140 38-108 (139)
12 3cdh_A Transcriptional regulat 27.6 1.6E+02 0.0053 24.1 6.9 69 67-141 47-119 (155)
13 3nrv_A Putative transcriptiona 27.4 49 0.0017 27.0 3.6 68 67-140 44-115 (148)
14 2fbi_A Probable transcriptiona 26.5 1.7E+02 0.0059 23.2 6.8 68 68-141 41-112 (142)
15 3bdd_A Regulatory protein MARR 26.0 2.1E+02 0.0072 22.6 7.3 60 68-133 36-99 (142)
16 3fm5_A Transcriptional regulat 25.7 80 0.0027 25.9 4.7 70 67-141 43-116 (150)
17 3jw4_A Transcriptional regulat 25.3 50 0.0017 27.1 3.3 72 66-141 44-119 (148)
18 3u2r_A Regulatory protein MARR 23.8 1.3E+02 0.0045 25.1 5.8 73 66-142 49-125 (168)
19 3f3x_A Transcriptional regulat 23.5 48 0.0016 27.0 2.8 70 66-142 40-113 (144)
20 4fp9_B Mterf domain-containing 22.9 6.3 0.00022 39.2 -3.2 20 91-110 87-107 (335)
21 2gxg_A 146AA long hypothetical 22.9 1.2E+02 0.0042 24.3 5.3 60 77-140 48-111 (146)
22 1lj9_A Transcriptional regulat 22.1 1.2E+02 0.0042 24.3 5.1 66 69-140 35-104 (144)
23 4fp9_B Mterf domain-containing 20.5 44 0.0015 33.1 2.3 42 297-340 139-181 (335)
No 1
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=50.96 E-value=89 Score=26.07 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
.+..+|...|++.++..+|.+ .+|++ .+++.=|.+---|=.. .+|..+..-++.||++|.+++.+=...+
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~---~l~~~~~tvs~~v~~Le~~Glv~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 112 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGE---RLMVHPTSVTNTVDRLVRSGLVAKR-PNPNDGRGTLATITDKGREVVEAATRDL 112 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEE-ECC----CEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHH---HHCCCHHHHHHHHHHHHhCCCEEEe-ecCCcCceeEEEECHHHHHHHHHHHHHH
Confidence 344566677888899998877 78887 3455555565555544 3454445558999999999987644444
No 2
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=49.60 E-value=30 Score=28.03 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCCeeehhchhhhcccCCCc-c---hhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 66 CLLKDAIKRSSTGFLTANSVSDWHKLLGLT-V---PVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 66 ~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~---~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
..+...|...|++.++..+|++ .+|++ . +++.=|.+---| +...+|..+..-.+.||++|.+++.+-.....
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~---~l~~~~~tvs~~l~~Le~~Gli-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 109 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAK---ALQRTGPTVSNLLRNLERKKLI-YRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFD 109 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSE-EEEECCC--CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHH---HhCCCcccHHHHHHHHHHCCCE-eecCCCCCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 4556667777766889988876 68887 2 333334444333 33345544455579999999999887554443
No 3
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=44.67 E-value=44 Score=26.86 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 66 CLLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 66 ~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
..+...|...|++.++..+|.+ .+|++ .+++.=|.+---| ....+|..+..-++.||++|.+++.+=..+..
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~---~l~~~~~tvs~~l~~Le~~Gli-~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~~ 112 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLL-YRKVSGKDSRQKCLKLTKKANKLETIILSYMD 112 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSE-EEEECSSCTTSEEEEECHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHH---HHCCCcchHHHHHHHHHHCCCE-EeeCCCcCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 4455667777766788888876 67887 2334444444333 33345544455579999999999876554443
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=35.07 E-value=11 Score=35.34 Aligned_cols=30 Identities=30% Similarity=0.204 Sum_probs=23.4
Q ss_pred ccchHhhhhhcCCCchhhhcccCCCCCCeEE
Q 014178 165 LQSLHSLKWDLGLPDNFEKILVPKFSDDFRF 195 (429)
Q Consensus 165 L~kl~~lr~dLGLP~DF~~~lv~~yP~~Frv 195 (429)
..+++.+ .++|++.+-..+++.++|..|.-
T Consensus 42 ~~~l~fL-~~lG~~~~~i~~il~~~P~lL~~ 71 (270)
T 3m66_A 42 KQMLLFL-KDVGIEDNQLGAFLTKNHAIFSE 71 (270)
T ss_dssp HHHHHHH-HHHTCCGGGHHHHHHHCTTGGGS
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHhCChhhhC
Confidence 4456666 47999999888899999988754
No 5
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=34.56 E-value=1e+02 Score=24.99 Aligned_cols=69 Identities=10% Similarity=-0.006 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
.+...|...|+ ++..+|++ .+|++ .+++.=|.+---|=. ..+|..+..-++.||++|.+++.+-.....
T Consensus 35 ~iL~~l~~~~~--~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r-~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 107 (145)
T 3g3z_A 35 AVLYTLATEGS--RTQKHIGE---KWSLPKQTVSGVCKTLAGQGLIEW-QEGEQDRRKRLLSLTETGKAYAAPLTESAQ 107 (145)
T ss_dssp HHHHHHHHHCS--BCHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEE-CCCSSCGGGSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEee-ccCCCCCceeeeeEChhHHHHHHHHHHHHH
Confidence 34445555553 78887766 68887 233333444433332 334444444579999999999876554444
No 6
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=34.27 E-value=60 Score=25.17 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=41.8
Q ss_pred CCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHhhchh
Q 014178 76 STGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHLTYEN 145 (429)
Q Consensus 76 P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~~e~ 145 (429)
++..++..+|++ .+|++ .+++.=|.+.=-| .++..+..-.+.||++|.++..+-...+.+.+.
T Consensus 27 ~~~~~t~~eLa~---~l~i~~~tvs~~l~~Le~~Glv----~~~~d~R~~~v~LT~~G~~~~~~~~~~~~~~e~ 93 (95)
T 2qvo_A 27 GGNDVYIQYIAS---KVNSPHSYVWLIIKKFEEAKMV----ECELEGRTKIIRLTDKGQKIAQQIKSIIDIMEN 93 (95)
T ss_dssp TTCCEEHHHHHH---HSSSCHHHHHHHHHHHHHTTSE----EEEEETTEEEEEECHHHHHHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHH---HHCcCHHHHHHHHHHHHHCcCc----cCCCCCCeEEEEEChhHHHHHHHHHHHHHHHhc
Confidence 445688888877 78887 3445556666666 223222334799999999999887777665543
No 7
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=31.81 E-value=1.5e+02 Score=24.01 Aligned_cols=71 Identities=4% Similarity=-0.112 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc-c---hhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT-V---PVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~---~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
.+...|...+++.++..+|++ .+|++ . +++.=|.+---|=.. .+|..+..-.+.||++|.+++.+-...+.
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r~-~~~~D~R~~~i~LT~~G~~~~~~~~~~~~ 115 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKK-RNEHDERTVLILVNAQQRKKIESLLSRVN 115 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCB-CCSSSSCCCEEECCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEec-CCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 444556666556789988877 78887 2 333334444333332 34444455589999999999988655544
No 8
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=31.61 E-value=55 Score=28.57 Aligned_cols=71 Identities=11% Similarity=0.028 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
.+...|...|++.+++.+|++ .+|++ .+++.=|.+---|=.. .+|..+..-++.||++|.+++.+-.....
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~---~l~is~~tvs~~l~~Le~~GlV~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 119 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIAR---KMGTSKQNINRLVANLEKNGYVDVI-PSPHDKRAINVKVTDLGKKVMVTCSRTGI 119 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEEE-ECSSCSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEec-cCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 344556666777889998876 78887 3344444455444443 34544455589999999999877554443
No 9
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=29.08 E-value=24 Score=32.93 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=33.4
Q ss_pred HHhhcccchhhhhhHHHhhhhhhCCchH-HHHHHhhCCCeEEEEee
Q 014178 297 EFLSLTIHKKTKRNYLRSLREELNLPHK-FTRLFTRYPGIFYLSLK 341 (429)
Q Consensus 297 ELLSLTveKr~~~~~L~~fr~efgLp~k-~~~~l~rHPgIFYvS~K 341 (429)
.+|++.+++ ...++.-|.+++|++.. +..++.++|.|+..|.+
T Consensus 138 ~il~~s~e~--~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~ 181 (270)
T 3m66_A 138 RLLTGSLEP--VKENMKVYRLELGFKHNEIQHMITRIPKMLTANKM 181 (270)
T ss_dssp GGGTSCSHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH
T ss_pred cceeechHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHH
Confidence 666777765 23556667889999986 77799999999999874
No 10
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=28.92 E-value=45 Score=28.10 Aligned_cols=69 Identities=14% Similarity=0.021 Sum_probs=35.0
Q ss_pred HHHHHHHhCCC---CeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHH
Q 014178 67 LLKDAIKRSST---GFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKI 139 (429)
Q Consensus 67 ~lk~li~~~P~---~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v 139 (429)
.+...|...|+ +.++..+|.+ .+|++ .+++.=|.+---| +. .+|..+..-.+.||++|.+++.+=..+
T Consensus 37 ~vL~~l~~~~~~~~~~~t~~eLa~---~l~~~~~tvsr~v~~Le~~glV-r~-~~~~DrR~~~v~LT~~G~~~~~~~~~~ 111 (148)
T 4fx0_A 37 STLAVISLSEGSAGIDLTMSELAA---RIGVERTTLTRNLEVMRRDGLV-RV-MAGADARCKRIELTAKGRAALQKAVPL 111 (148)
T ss_dssp HHHHHHHC---------CHHHHHH---HHTCCHHHHHHHHHHHHHTTSB-C------------CCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHCCCE-Ee-eCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 34455655553 4688888876 78886 3444445555455 54 345444555899999999998775444
Q ss_pred H
Q 014178 140 H 140 (429)
Q Consensus 140 ~ 140 (429)
.
T Consensus 112 ~ 112 (148)
T 4fx0_A 112 W 112 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=28.75 E-value=2.1e+02 Score=22.57 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=40.8
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
+...|...+ .+++.++.+ .+|++ .+.+.-|.+- ++-....+|..+..-.+.||++|.+++.+-....
T Consensus 38 iL~~l~~~~--~~~~~ela~---~l~~~~~tvs~~l~~L~~~-gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 108 (139)
T 3bja_A 38 VIQVLAKSG--KVSMSKLIE---NMGCVPSNMTTMIQRMKRD-GYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQY 108 (139)
T ss_dssp HHHHHHHSC--SEEHHHHHH---HCSSCCTTHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CcCHHHHHH---HHCCChhHHHHHHHHHHHC-CCeeeccCCCCCceeEEEECHHHHHHHHHHHHHH
Confidence 444455444 478888876 67886 3344444454 3444444554444557999999999987644443
No 12
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=27.57 E-value=1.6e+02 Score=24.10 Aligned_cols=69 Identities=9% Similarity=0.028 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
.+..+|...+ .++..+|.+ .+|++ .+++.=|.+---| +...++..+..-++.||++|..++.+-.....
T Consensus 47 ~iL~~l~~~~--~~t~~ela~---~l~i~~~tvs~~l~~Le~~Glv-~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 119 (155)
T 3cdh_A 47 RVLACLVDND--AMMITRLAK---LSLMEQSRMTRIVDQMDARGLV-TRVADAKDKRRVRVRLTDDGRALAESLVASAR 119 (155)
T ss_dssp HHHHHHSSCS--CBCHHHHHH---HTTCCHHHHHHHHHHHHHTTSE-EECC------CCCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCE-EeccCCCcCCeeEeEECHHHHHHHHHHHHHHH
Confidence 3444454443 578888776 78887 3334444444333 33344444445579999999999877555444
No 13
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=27.42 E-value=49 Score=26.97 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
.+...|...| .++..+|.+ .+|++ .+.+.-|.+- ++.....+|..+..-++.||++|.++..+-....
T Consensus 44 ~iL~~l~~~~--~~t~~ela~---~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~~ 115 (148)
T 3nrv_A 44 RIISVLSSAS--DCSVQKISD---ILGLDKAAVSRTVKKLEEK-KYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
T ss_dssp HHHHHHHHSS--SBCHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEC---------CCBEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHC-CCEEeecCCCCcceeEeEECHhHHHHHHHHHHHH
Confidence 3444455555 677777766 68887 2333444444 4444444554444557999999999987644443
No 14
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=26.48 E-value=1.7e+02 Score=23.16 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
+...|...+ .++..++.+ .+|++ .+++.-|.+---|- ...+|..+..-++.||++|.+++.+-.....
T Consensus 41 iL~~l~~~~--~~t~~ela~---~l~~s~~~vs~~l~~Le~~glv~-r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 112 (142)
T 2fbi_A 41 VIRILRQQG--EMESYQLAN---QACILRPSMTGVLARLERDGIVR-RWKAPKDQRRVYVNLTEKGQQCFVSMSGDME 112 (142)
T ss_dssp HHHHHHHHC--SEEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEE-EEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHH---HHCCCHhHHHHHHHHHHHCCCEE-eecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 344444444 378888876 78887 23334444443333 2334433334479999999999876544443
No 15
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=26.01 E-value=2.1e+02 Score=22.63 Aligned_cols=60 Identities=8% Similarity=0.015 Sum_probs=36.2
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHH
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLD 133 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~ 133 (429)
+...|...+ .++..++++ .+|++ .+.+.-|.+- ++.....+|..+..-.+.||++|.+++
T Consensus 36 iL~~l~~~~--~~~~~ela~---~l~is~~~vs~~l~~L~~~-gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 36 ILQTLLKDA--PLHQLALQE---RLQIDRAAVTRHLKLLEES-GYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHC--SBCHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHhCC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHC-CCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 334444433 477777776 67887 3344444454 333444455444445799999999988
No 16
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=25.73 E-value=80 Score=25.85 Aligned_cols=70 Identities=9% Similarity=-0.069 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc-c---hhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT-V---PVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~---~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
.+..+|...|+ .++..+|.+ .+|++ . +++.=|.+---| +-..+|..+..-++.||++|.+++.+-.....
T Consensus 43 ~vL~~l~~~~~-~~t~~eLa~---~l~i~~~tvs~~l~~Le~~Glv-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 116 (150)
T 3fm5_A 43 SVLVLACEQAE-GVNQRGVAA---TMGLDPSQIVGLVDELEERGLV-VRTLDPSDRRNKLIAATEEGRRLRDDAKARVD 116 (150)
T ss_dssp HHHHHHHHSTT-CCCSHHHHH---HHTCCHHHHHHHHHHHHTTTSE-EC-----------CEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CcCHHHHHH---HHCCCHhHHHHHHHHHHHCCCE-EeeCCccccchheeeECHHHHHHHHHHHHHHH
Confidence 34445555654 378888876 78887 2 333334444333 22334444445579999999999877554443
No 17
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=25.32 E-value=50 Score=27.07 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 66 CLLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 66 ~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
..+...|...|++.++..+|.+ .+|++ .+++.=|.+---|=.. .+|..+..-.+.||++|.++..+-.....
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~---~l~~~~~~vs~~l~~L~~~Glv~r~-~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 119 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQ---FFGRRGASITSMLQGLEKKGYIERR-IPENNARQKNIYVLPKGAALVEEFNNIFL 119 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHH---C------CHHHHHHHHHHTTSBCCC---------CCCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHH---HHCCChhHHHHHHHHHHHCCCEEee-CCCCCchhheeeECHHHHHHHHHHHHHHH
Confidence 3455556666656788888876 78887 2333333343333322 24433344579999999999887555544
No 18
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=23.78 E-value=1.3e+02 Score=25.15 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 66 CLLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 66 ~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
..+...|...++..+++.+|.+ .+|++ .+++.=|.+---|-.. .+|..+..-.+.||++|.+++.+=...+.
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~---~l~~~~~tvs~~l~~Le~~Glv~r~-~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 124 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIAD---RLISRAPDITRLIDRLDDRGLVLRT-RKPENRRVVEVALTDAGLKLLKDLEEPVR 124 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHH---HC---CTHHHHHHHHHHHTTSEEEE-EETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHCCCEeec-CCCCCCCeeEeEECHHHHHHHHHHHHHHH
Confidence 3444556665445788888877 67886 3444445555444443 34433344479999999999877555544
Q ss_pred h
Q 014178 142 T 142 (429)
Q Consensus 142 ~ 142 (429)
.
T Consensus 125 ~ 125 (168)
T 3u2r_A 125 Q 125 (168)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=23.47 E-value=48 Score=27.00 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 66 CLLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 66 ~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
..+...|...|+ +..+|++ .+|++ .+.+.=|.+. ++-.-..+|..+..-.+.||++|.++..+=..+..
T Consensus 40 ~~iL~~l~~~~~---~~~~la~---~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 112 (144)
T 3f3x_A 40 FSILKATSEEPR---SMVYLAN---RYFVTQSAITAAVDKLEAK-GLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLR 112 (144)
T ss_dssp HHHHHHHHHSCE---EHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---CHHHHHH---HHCCChhHHHHHHHHHHHC-CCEEeccCCCCCceEEEEECHHHHHHHHHHHHHHH
Confidence 345555666665 7777765 68887 3444444455 33343344443344479999999999887655554
Q ss_pred h
Q 014178 142 T 142 (429)
Q Consensus 142 ~ 142 (429)
.
T Consensus 113 ~ 113 (144)
T 3f3x_A 113 N 113 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=22.94 E-value=6.3 Score=39.18 Aligned_cols=20 Identities=45% Similarity=0.781 Sum_probs=11.8
Q ss_pred cCCCc-chhhhhhhhCCCcee
Q 014178 91 LLGLT-VPVIRFLRRYPTLFH 110 (429)
Q Consensus 91 ~Lgl~-~~~~~FLrkyP~iF~ 110 (429)
.||++ ..+...|.++|.++.
T Consensus 87 ~LGls~e~V~kiL~k~P~lL~ 107 (335)
T 4fp9_B 87 LLGLNPEPVCVVLKKSPQLLK 107 (335)
T ss_dssp HTTCCHHHHHHHHHHCGGGGG
T ss_pred HcCCCHHHHHHHHHhChhhcc
Confidence 35665 556666666666654
No 21
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=22.87 E-value=1.2e+02 Score=24.26 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=37.9
Q ss_pred CCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 77 TGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 77 ~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
++.++..+|++ .+|++ .+++.=|.+- ++-....+|..+..-++.||++|..++.+-....
T Consensus 48 ~~~~~~~ela~---~l~~s~~tvs~~l~~Le~~-glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 111 (146)
T 2gxg_A 48 DGPKTMAYLAN---RYFVTQSAITASVDKLEEM-GLVVRVRDREDRRKILIEITEKGLETFNKGIEIY 111 (146)
T ss_dssp TSCBCHHHHHH---HTTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHH---HhCCCchhHHHHHHHHHHC-CCEEeecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 44678888876 78887 3344444444 3444444544444457999999999987654444
No 22
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=22.11 E-value=1.2e+02 Score=24.31 Aligned_cols=66 Identities=6% Similarity=0.051 Sum_probs=39.7
Q ss_pred HHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 69 KDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 69 k~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
...|...+ .++..++++ .+|++ .+++.=|.+- ++-....+|..+..-.+.||++|..++.+-....
T Consensus 35 L~~l~~~~--~~t~~~la~---~l~~s~~~vs~~l~~Le~~-gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 104 (144)
T 1lj9_A 35 LVRVCENP--GIIQEKIAE---LIKVDRTTAARAIKRLEEQ-GFIYRQEDASNKKIKRIYATEKGKNVYPIIVREN 104 (144)
T ss_dssp HHHHHHST--TEEHHHHHH---HHTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHCc--CcCHHHHHH---HHCCCHhHHHHHHHHHHHC-CCEEeecCCCCCceeeeEEChhHHHHHHHHHHHH
Confidence 33444444 477777766 67887 2333334444 3334444554444557999999999987644444
No 23
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=20.46 E-value=44 Score=33.08 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=29.8
Q ss_pred HHhhcccchhhhhhHHHhhhhhhCCchH-HHHHHhhCCCeEEEEe
Q 014178 297 EFLSLTIHKKTKRNYLRSLREELNLPHK-FTRLFTRYPGIFYLSL 340 (429)
Q Consensus 297 ELLSLTveKr~~~~~L~~fr~efgLp~k-~~~~l~rHPgIFYvS~ 340 (429)
.+|++..++ ...++..|+..+|++.+ +..|+.++|.|+..|.
T Consensus 139 ~lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~ 181 (335)
T 4fp9_B 139 EIFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL 181 (335)
T ss_dssp GGGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH
T ss_pred hhhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH
Confidence 344444443 23556678889999765 8889999999998885
Done!