Query 014178
Match_columns 429
No_of_seqs 135 out of 186
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 06:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 67.9 9.1 0.00066 29.8 7.9 74 64-141 30-107 (135)
2 d2frha1 a.4.5.28 (A:102-216) P 45.7 20 0.0014 27.5 6.1 62 70-135 40-105 (115)
3 d1hsja1 a.4.5.28 (A:373-487) S 39.5 48 0.0035 25.2 7.6 67 67-137 36-106 (115)
4 d1p4xa2 a.4.5.28 (A:126-250) S 36.7 56 0.0041 25.3 7.7 65 67-135 37-105 (125)
5 d2hr3a1 a.4.5.28 (A:2-146) Pro 29.2 89 0.0065 23.9 7.8 63 69-136 40-106 (145)
6 d1p4xa1 a.4.5.28 (A:1-125) Sta 26.6 1.2E+02 0.0088 23.0 8.0 67 68-138 39-109 (125)
7 d2fbia1 a.4.5.28 (A:5-140) Pro 24.3 95 0.0069 23.5 7.0 69 68-142 35-107 (136)
8 d2fbha1 a.4.5.28 (A:8-144) Tra 23.9 83 0.0061 23.8 6.5 68 68-140 33-104 (137)
9 d2etha1 a.4.5.28 (A:1-140) Put 23.9 63 0.0046 24.7 5.8 67 69-141 38-108 (140)
10 d1lj9a_ a.4.5.28 (A:) Transcri 23.5 93 0.0068 24.0 6.8 66 70-141 36-105 (144)
11 d2a61a1 a.4.5.28 (A:5-143) Tra 21.5 55 0.004 25.1 4.9 68 69-142 36-107 (139)
12 d3ctaa1 a.4.5.28 (A:5-89) Ta10 21.0 40 0.0029 24.6 3.7 70 63-139 5-78 (85)
13 d2fbka1 a.4.5.28 (A:8-179) Tra 20.8 67 0.0049 25.8 5.5 65 72-140 72-140 (172)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=67.92 E-value=9.1 Score=29.76 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHH
Q 014178 64 AACLLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKI 139 (429)
Q Consensus 64 ~v~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v 139 (429)
.-..+-.+|...|++.++..+|++ .+|++ .++..-|.+---|-... +|..+....+.|||+|.+++.+=...
T Consensus 30 ~q~~vL~~l~~~~~~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~-~~~D~R~~~i~lT~~G~~~~~~~~~~ 105 (135)
T d3broa1 30 TQMTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKV-SGKDSRQKCLKLTKKANKLETIILSY 105 (135)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEE-CSSCTTSEEEEECHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhcccHHHHHHHHHHHHH
Confidence 334566777888999999999987 77886 45555566666666654 34333455899999999998875554
Q ss_pred Hh
Q 014178 140 HL 141 (429)
Q Consensus 140 ~~ 141 (429)
..
T Consensus 106 ~~ 107 (135)
T d3broa1 106 MD 107 (135)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 2
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=45.69 E-value=20 Score=27.52 Aligned_cols=62 Identities=6% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHH
Q 014178 70 DAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSL 135 (429)
Q Consensus 70 ~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~e 135 (429)
..|...|++.+++.+|.+ .++++ .+++.-|.+---|-.. .+|..+..-++.|||+|.+.+.+
T Consensus 40 ~~l~~~~~~~~t~~~la~---~l~~~~~tvs~~i~~Le~~gli~r~-~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 40 TYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKK-RNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCB-CCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHH---HHCCCHhHHHHHHHHHHhhhhheee-ecccCCceEEEEECHHHHHHHHH
Confidence 457788988999988877 78886 4555556666666444 35555566689999999998766
No 3
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=39.53 E-value=48 Score=25.15 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHH
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQ 137 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~ 137 (429)
.+..+|...+++.+++.+|++ .+|++ .+++.=|.+---|=... +|..+..-++.||++|.+++.+=.
T Consensus 36 ~vL~~l~~~~~~~~t~~ela~---~l~~~~~~vs~~i~~Le~~gli~r~~-~~~D~R~~~i~LT~~G~~~~~~~~ 106 (115)
T d1hsja1 36 YILNHILRSESNEISSKEIAK---CSEFKPYYLTKALQKLKDLKLLSKKR-SLQDERTVIVYVTDTQKANIQKLI 106 (115)
T ss_dssp HHHHHHHTCSCSEEEHHHHHH---SSCCCHHHHHHHHHHHHTTTTSCCEE-CCSSSSCCEEECCSSHHHHHHHHH
T ss_pred HHHHHHHccCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHcCCeEEEe-ecCCCceEEEEECHHHHHHHHHHH
Confidence 355556677788899999987 88887 34444444444444333 444445568999999999987733
No 4
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=36.70 E-value=56 Score=25.25 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCCeeehhchhhhcccCCCc-chhh---hhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHH
Q 014178 67 LLKDAIKRSSTGFLTANSVSDWHKLLGLT-VPVI---RFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSL 135 (429)
Q Consensus 67 ~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~~~~---~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~e 135 (429)
.+...|...+++.+++.++++ .+|++ ..+. .=|.+---|=.. .+|..+..-++.||++|.+++.+
T Consensus 37 ~vL~~l~~~~~~~~~~~~ia~---~l~~~~~~vs~~v~~L~~~glV~r~-~~~~D~R~v~i~LT~~G~~~~~~ 105 (125)
T d1p4xa2 37 TILAIITSQNKNIVLLKDLIE---TIHHKYPQTVRALNNLKKQGYLIKE-RSTEDERKILIHMDDAQQDHAEQ 105 (125)
T ss_dssp HHHHHHHTTTTCCEEHHHHHH---HSSSCHHHHHHHHHHHHHHTSSEEE-ECSSSTTCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHccCCCccHHHHHH---HHCCCcchHHHHHHHHHhccCEeee-ecCCCCCeEEEEECHHHHHHHHH
Confidence 344556667777899988877 78887 2332 223333333222 34444455589999999998877
No 5
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.24 E-value=89 Score=23.94 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=38.6
Q ss_pred HHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHH
Q 014178 69 KDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLE 136 (429)
Q Consensus 69 k~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE 136 (429)
...|...|+ .+++.+|++ .+|++ .+++.-|.+---| +-..+|..+..-++.||++|.+++.+-
T Consensus 40 L~~L~~~~g-~~t~~~La~---~~~~~~~~vs~~i~~L~~~glv-~r~~~~~DrR~~~i~LT~~G~~~~~~~ 106 (145)
T d2hr3a1 40 LGAIDRLGG-DVTPSELAA---AERMRSSNLAALLRELERGGLI-VRHADPQDGRRTRVSLSSEGRRNLYGN 106 (145)
T ss_dssp HHHHHHTTS-CBCHHHHHH---HTTCCHHHHHHHHHHHHHTTSE-EEEC------CCEEEECHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHH---HHCCCHHHHHHHHHHHHHcCCe-EeeeCccchhHHHhccCHHHHHHHHHH
Confidence 344455554 688888877 78887 4555556666555 333455444556899999999987663
No 6
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=26.64 E-value=1.2e+02 Score=22.95 Aligned_cols=67 Identities=9% Similarity=-0.027 Sum_probs=41.8
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHH
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQK 138 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~ 138 (429)
+...|...|++.+++.++++ .+++. .+++.=|.+---|=.. .++..+..-.+.||++|.+++.+-..
T Consensus 39 iL~~l~~~~~~~~t~~eia~---~~~~~~~~vs~~l~~L~~~g~v~r~-~~~~D~R~~~i~lT~~G~~~~~~~~~ 109 (125)
T d1p4xa1 39 LLTYLFHQQENTLPFKKIVS---DLCYKQSDLVQHIKVLVKHSYISKV-RSKIDERNTYISISEEQREKIAERVT 109 (125)
T ss_dssp HHHHHHSCSCSEEEHHHHHH---HSSSCGGGTHHHHHHHHHTTSCEEE-ECSSSTTSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcCHHHHHH---HhCCCcchHHHHHHHHHHCCCceee-cccCCCCeEEEEECHHHHHHHHHHHH
Confidence 34566777888999998877 67776 2333333333333222 23433345589999999998876433
No 7
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.27 E-value=95 Score=23.48 Aligned_cols=69 Identities=7% Similarity=-0.016 Sum_probs=43.0
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHhh
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHLT 142 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~ 142 (429)
+-..|...+ .+++.++.+ .+|++ .+++.-|.+---|=. ..+|..+..-++.||++|.++..+=......
T Consensus 35 vL~~l~~~~--~~t~~~la~---~~~i~~~~vs~~i~~L~~~gli~r-~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~ 107 (136)
T d2fbia1 35 VIRILRQQG--EMESYQLAN---QACILRPSMTGVLARLERDGIVRR-WKAPKDQRRVYVNLTEKGQQCFVSMSGDMEK 107 (136)
T ss_dssp HHHHHHHHC--SEEHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEE-EEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEE-eecCccCchhhhccCHHHHHHHHHHHHHHHH
Confidence 334455544 477887766 78887 344444555544433 3355544555899999999998875555543
No 8
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.87 E-value=83 Score=23.77 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=42.7
Q ss_pred HHHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 68 LKDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 68 lk~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
+...|...|+ .+++++|++ .+|++ .+++.=|.+.--|=. ..+|..+..-.+.||++|.+++.+=....
T Consensus 33 iL~~l~~~~~-~~t~~~la~---~~~~~~~~vs~~v~~L~~~gli~r-~~~~~D~R~~~i~lT~~G~~~~~~~~~~~ 104 (137)
T d2fbha1 33 VLLHLARHRD-SPTQRELAQ---SVGVEGPTLARLLDGLESQGLVRR-LAVAEDRRAKHIVLTPKADVLIADIEAIA 104 (137)
T ss_dssp HHHHHHHCSS-CCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEE-ECCBTTBCSCEEEECTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCcHHHHHH---HHCCCHHHHHHHHHHHHHcCCccc-cCCCCCCCchhhhcCHHHHHHHHHHHHHH
Confidence 3444556665 467777766 78887 233444445444443 34555556668999999999987744444
No 9
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=23.85 E-value=63 Score=24.68 Aligned_cols=67 Identities=10% Similarity=-0.056 Sum_probs=42.4
Q ss_pred HHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 69 KDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 69 k~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
...|..+|+ +++.+|++ .+|++ .++.+=|.+---|=.. .+|..+..-++.||++|.+++.+-.....
T Consensus 38 L~~l~~~~~--~t~~~La~---~l~i~~~~vs~~v~~L~~~gli~r~-~~~~D~R~~~l~lT~~G~~~~~~~~~~~~ 108 (140)
T d2etha1 38 FLYVALFGP--KKMKEIAE---FLSTTKSNVTNVVDSLEKRGLVVRE-MDPVDRRTYRVVLTEKGKEIFGEILSNFE 108 (140)
T ss_dssp HHHHHHHCC--BCHHHHHH---HTTSCHHHHHHHHHHHHHTTSEEEE-ECTTTSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--cCHHHHHH---HHCcCHHHHHHHHHHHHHCCCeeee-ecccccchhhhhcCHHHHHHHHHHHHHHH
Confidence 344555554 56777765 88887 3444444455455444 34544455689999999999887666554
No 10
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=23.46 E-value=93 Score=23.96 Aligned_cols=66 Identities=6% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHhCCCCeeehhchhhhcccCCCc-chhhhh---hhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHh
Q 014178 70 DAIKRSSTGFLTANSVSDWHKLLGLT-VPVIRF---LRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHL 141 (429)
Q Consensus 70 ~li~~~P~~~ipl~~L~k~~~~Lgl~-~~~~~F---LrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~ 141 (429)
..|..+|+ ++..+|++ .++++ ..+.+. |.+---|-. ..+|..+....+.||++|.+++.+-.....
T Consensus 36 ~~i~~~~~--~t~~~la~---~l~i~~~tvs~~l~~L~~~glI~r-~~~~~D~R~~~l~LT~~G~~~~~~~~~~~~ 105 (144)
T d1lj9a_ 36 VRVCENPG--IIQEKIAE---LIKVDRTTAARAIKRLEEQGFIYR-QEDASNKKIKRIYATEKGKNVYPIIVRENQ 105 (144)
T ss_dssp HHHHHSTT--EEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEE-EECSSCTTCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC--CCHHHHHH---HHCccHhhHHHHHHHHHhhhcccc-cCCCCCCCccccccCHHHHHHHHHHHHHHH
Confidence 44556664 67777766 78887 233333 333333333 346655566689999999999877555443
No 11
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=21.47 E-value=55 Score=25.10 Aligned_cols=68 Identities=12% Similarity=-0.042 Sum_probs=43.5
Q ss_pred HHHHHhCCCCeeehhchhhhcccCCCc----chhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHHhh
Q 014178 69 KDAIKRSSTGFLTANSVSDWHKLLGLT----VPVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIHLT 142 (429)
Q Consensus 69 k~li~~~P~~~ipl~~L~k~~~~Lgl~----~~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~~~ 142 (429)
...|...| .+++++|.+ .+|++ .+++.-|.+---|-..- +|..+...++.||++|.+++.+=......
T Consensus 36 L~~i~~~~--~~t~~~la~---~l~i~~~tvs~~l~~L~~~gli~r~~-~~~D~R~~~i~LT~~G~~~~~~~~~~~~~ 107 (139)
T d2a61a1 36 LQKIYFEG--PKRPGELSV---LLGVAKSTVTGLVKRLEADGYLTRTP-DPADRRAYFLVITRKGEEVIEKVIERREN 107 (139)
T ss_dssp HHHHHHHC--CBCHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCHHHHHH---HhCCCcccchHHHHHHHhcCeeeeee-ccCCCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 33344444 457777766 88997 35555566666666553 44433456899999999998775555543
No 12
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=20.98 E-value=40 Score=24.62 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhCCCCeeehhchhhhcccCCCc-chhhhhh---hhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHH
Q 014178 63 KAACLLKDAIKRSSTGFLTANSVSDWHKLLGLT-VPVIRFL---RRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQK 138 (429)
Q Consensus 63 r~v~~lk~li~~~P~~~ipl~~L~k~~~~Lgl~-~~~~~FL---rkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~ 138 (429)
+.+..|..+-....+..|+..+|++ .+|++ ..+.+.| .+---|-.. .+ +...++.||++|.+++.++..
T Consensus 5 ~~l~~l~~~~~~~~~~~lt~~eLa~---~l~i~~~~vs~~l~~Le~~GlV~r~-~D---~R~~~i~LT~~G~~~l~~~~~ 77 (85)
T d3ctaa1 5 RAIKKIKEAAEASNRAYLTSSKLAD---MLGISQQSASRIIIDLEKNGYITRT-VT---KRGQILNITEKGLDVLYTEFA 77 (85)
T ss_dssp HHHHHHHHHTTTSSEEECCHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEEE-EE---TTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCCHHHHHH---HHCCCHHHHHHHHHHHHHCCCeeee-cc---cccccceECHHHHHHHHHHHH
Confidence 3444455444444455788888877 78887 3444333 333333321 12 234479999999999988664
Q ss_pred H
Q 014178 139 I 139 (429)
Q Consensus 139 v 139 (429)
-
T Consensus 78 ~ 78 (85)
T d3ctaa1 78 D 78 (85)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.76 E-value=67 Score=25.85 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=36.1
Q ss_pred HHhCCCCeeehhchhhhcccCCCc-c---hhhhhhhhCCCceeeccCCCCCCCCceecCHHHHHHHHHHHHHH
Q 014178 72 IKRSSTGFLTANSVSDWHKLLGLT-V---PVIRFLRRYPTLFHEFPHSRYANLPCFRLTDTALLLDSLEQKIH 140 (429)
Q Consensus 72 i~~~P~~~ipl~~L~k~~~~Lgl~-~---~~~~FLrkyP~iF~~~~~~~~~~~p~~rLT~~a~~L~~eE~~v~ 140 (429)
..+.|...++..+|.+ .+|++ . +++.=|.+-=-|-. ..+|..+..-.+.||++|.+++.+=....
T Consensus 72 ~~~~~~~~lt~~eLa~---~l~i~~~tvsr~l~~Le~~GlV~r-~~~~~DrR~~~i~LT~~G~~l~~~~~~~~ 140 (172)
T d2fbka1 72 YRSAPPEGLRPTELSA---LAAISGPSTSNRIVRLLEKGLIER-REDERDRRSASIRLTPQGRALVTHLLPAH 140 (172)
T ss_dssp HHHCCSSCBCHHHHHH---HCSCCSGGGSSHHHHHHHHTSEEC-CC-------CCBEECHHHHHHHHHHHHHH
T ss_pred HhhCCCCCcCHHHHHH---HHCcCHhHHHHHHHHHHhCCCeee-eccccchhhHHhhcCHHHHHHHHHHHHHH
Confidence 3455666788888876 77776 2 23333333333333 23454445568999999999987744433
Done!