Query 014181
Match_columns 429
No_of_seqs 150 out of 236
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 06:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 21.8 24 0.00081 24.7 0.5 19 388-406 14-32 (37)
2 1tac_A TAT protein; transcript 9.7 1.9E+02 0.0066 23.6 2.9 11 16-26 50-60 (86)
3 3bqa_A Sensor protein PHOQ; hi 7.1 81 0.0028 28.2 -0.5 19 353-371 68-86 (148)
4 1tvs_A Transactivator protein; 6.6 1.6E+02 0.0054 23.5 1.0 14 12-25 52-65 (75)
5 2zou_A Spondin-1; beta-sandwic 6.3 2.1E+02 0.0071 24.8 1.8 24 394-417 54-80 (149)
6 3npd_A Putative secreted prote 5.8 2.6E+02 0.009 23.8 2.0 15 388-402 29-43 (118)
7 3coo_A Spondin-1; reelin-N dom 5.5 1.8E+02 0.0062 26.3 0.9 24 394-417 69-95 (180)
8 2dgb_A Hypothetical protein PU 4.6 3.6E+02 0.012 21.1 2.0 41 361-407 42-84 (84)
9 3l4n_A Monothiol glutaredoxin- 4.0 7.4E+02 0.025 20.4 3.6 57 337-393 5-77 (127)
10 4ekx_C 14L protein; binding pr 3.8 5.9E+02 0.02 21.6 2.8 39 247-285 7-49 (116)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=21.84 E-value=24 Score=24.75 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.3
Q ss_pred ceeEEeeeEeeecCCCCCC
Q 014181 388 KLCKLDFGLTIQENKTENL 406 (429)
Q Consensus 388 k~lvvD~GfvIEG~~eeEL 406 (429)
=++..|+||.++...+|.+
T Consensus 14 FSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 14 FSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred EEEEeccccccCCcchhhh
Confidence 3789999999998776654
No 2
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=9.72 E-value=1.9e+02 Score=23.62 Aligned_cols=11 Identities=45% Similarity=0.477 Sum_probs=4.5
Q ss_pred hhhhhhccccc
Q 014181 16 SKRISKRRVSF 26 (429)
Q Consensus 16 ~~~~~~~~~~~ 26 (429)
+||+.|||.+.
T Consensus 50 kkRr~RRr~p~ 60 (86)
T 1tac_A 50 KKRRQRRRPSQ 60 (86)
T ss_dssp CSGGGSCTTCC
T ss_pred ccccccCCCCC
Confidence 33333455433
No 3
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=7.06 E-value=81 Score=28.17 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.5
Q ss_pred ceeeccCCCeEEEEEeccC
Q 014181 353 QHEFYLGENYFEIDLDVHR 371 (429)
Q Consensus 353 ~~~y~~G~nYlEiDvDI~s 371 (429)
+..|.+.++|+|||.|++.
T Consensus 68 ~~eWLkk~gf~Eidtd~~~ 86 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVND 86 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHH
T ss_pred CHHHhcCCCcEEEecCcch
Confidence 5567788899999999997
No 4
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=6.57 E-value=1.6e+02 Score=23.54 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=6.7
Q ss_pred hhhhhhhhhhcccc
Q 014181 12 KKLKSKRISKRRVS 25 (429)
Q Consensus 12 ~~~~~~~~~~~~~~ 25 (429)
++.|++|+.|||.+
T Consensus 52 ~~~RKKRrqRRr~p 65 (75)
T 1tvs_A 52 ASLRKKNKQRLKAI 65 (75)
T ss_dssp HHTHHHHHHHHHHT
T ss_pred hhHHHhhhcccCCc
Confidence 33444455455543
No 5
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=6.33 E-value=2.1e+02 Score=24.80 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=18.9
Q ss_pred eeEeeecCCCCCC---cccccceEEec
Q 014181 394 FGLTIQENKTENL---PENMLCCIRLN 417 (429)
Q Consensus 394 ~GfvIEG~~eeEL---PE~lLG~vRl~ 417 (429)
.||+||++.++.. +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 5999999887654 56789998874
No 6
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=5.76 E-value=2.6e+02 Score=23.79 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=12.1
Q ss_pred ceeEEeeeEeeecCC
Q 014181 388 KLCKLDFGLTIQENK 402 (429)
Q Consensus 388 k~lvvD~GfvIEG~~ 402 (429)
..=++|-|+|+||+.
T Consensus 29 nEdiLDqgYTVeG~~ 43 (118)
T 3npd_A 29 NEDILDQGYTVEGNQ 43 (118)
T ss_dssp SSSEEEEEEEEETTE
T ss_pred hhHHhhcceeechHH
Confidence 345899999999963
No 7
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=5.47 E-value=1.8e+02 Score=26.31 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=19.0
Q ss_pred eeEeeecCCCCCC---cccccceEEec
Q 014181 394 FGLTIQENKTENL---PENMLCCIRLN 417 (429)
Q Consensus 394 ~GfvIEG~~eeEL---PE~lLG~vRl~ 417 (429)
.||+||++.++.. +...+|.+.+.
T Consensus 69 ~GFlLqAr~~~~~~~~~~~~vGtF~~~ 95 (180)
T 3coo_A 69 RGFTLIALRENREGDKEEDHAGTFQII 95 (180)
T ss_dssp SCCEEEEEETTCCSSSGGGBCSEEECS
T ss_pred eEEEEEEEcCCCCccCCCCceeEEEec
Confidence 4999999887664 56789999864
No 8
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=4.64 E-value=3.6e+02 Score=21.05 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=20.9
Q ss_pred CeEEEEEeccCchHH-HHHHHHHhhhccceeEE-eeeEeeecCCCCCCc
Q 014181 361 NYFEIDLDVHRFSYL-SRKTFAAFQDRFKLCKL-DFGLTIQENKTENLP 407 (429)
Q Consensus 361 nYlEiDvDI~sfS~i-Ar~~l~l~~g~~k~lvv-D~GfvIEG~~eeELP 407 (429)
.|||++++..+ ..- ...+-.+| ..+.+-|+ |.-+-++ +|||
T Consensus 42 K~~~l~~~~~~-~~~a~~~v~~~~-~LLaNpVie~y~~~~~----~~~~ 84 (84)
T 2dgb_A 42 KVLEIVFPAEN-LLEAEEKAKAMG-ALLANPVMEVYALEAL----KELP 84 (84)
T ss_dssp EEEEEEEECSS-HHHHHHHHHHHH-HHHSCTTTEEEEEEEE----EEEC
T ss_pred EEEEEEecCCC-HHHHHHHHHHHH-HHhCCccceEEEEEEe----cCCC
Confidence 57899998654 333 22344555 44444333 3333333 6665
No 9
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=4.01 E-value=7.4e+02 Score=20.43 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHhhhcCCeeeeec--Cceeec-------c-----CCCeEEEEEeccCchHHHHHHHHHhhh--ccceeEEe
Q 014181 337 KKILNTYNEKPVLSR--PQHEFY-------L-----GENYFEIDLDVHRFSYLSRKTFAAFQD--RFKLCKLD 393 (429)
Q Consensus 337 r~l~~avn~KPvLir--~~~~y~-------~-----G~nYlEiDvDI~sfS~iAr~~l~l~~g--~~k~lvvD 393 (429)
+.+.+.++..||.+- +.|.|- . |..|-++|||...-..-.+..+....| .+..+.||
T Consensus 5 ~~~~~ii~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~ 77 (127)
T 3l4n_A 5 KEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN 77 (127)
T ss_dssp HHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHHHccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence 347778888888773 566652 1 568999999987422334455544433 34566665
No 10
>4ekx_C 14L protein; binding protein, beta trefoil, immunoglobulin fold, YLDV, YA yatapoxvirus, cytokine signaling, cytokine-viral prote complex; 1.75A {Yaba-like disease virus} PDB: 4eee_A
Probab=3.77 E-value=5.9e+02 Score=21.60 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=21.6
Q ss_pred EEEEcCCCccc--ccC--CCCCCCCeEEEEEEeeCccccCCCC
Q 014181 247 VNLQIPLYPAA--IFQ--GENDGEGMNLVLYFKLSESYSKDLP 285 (429)
Q Consensus 247 VNiqlP~~p~~--~F~--~~~DGeg~slVlYF~~~e~~~~~l~ 285 (429)
||+++|..+.+ ++. +-..=+++|.+.|+.-...+-++++
T Consensus 7 ~~v~vp~~~ts~l~l~C~~~s~~~~fS~lYW~lgN~sfIe~l~ 49 (116)
T 4ekx_C 7 VNIHVPVKETSKVVLECRGDSYFRHFSYVYWIIGKNKTVDQLP 49 (116)
T ss_dssp EEEEEESSCCSEEEEEEEEECSCTTSCEEEEEETTTEEGGGSC
T ss_pred EEEEeccCCCcEEEEEeEEEeCCCCccEEEEEEcCCcchhhhc
Confidence 67888877652 222 1112256785555455666666555
Done!