Query 014182
Match_columns 429
No_of_seqs 135 out of 373
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 6E-84 1.3E-88 628.6 21.4 236 157-428 1-237 (258)
2 PF00651 BTB: BTB/POZ domain; 97.4 0.00021 4.5E-09 59.5 4.4 69 2-78 38-109 (111)
3 smart00225 BTB Broad-Complex, 97.0 0.0008 1.7E-08 52.4 4.2 48 12-61 37-84 (90)
4 PHA03098 kelch-like protein; P 96.6 0.0078 1.7E-07 64.2 9.1 88 13-118 47-137 (534)
5 KOG4441 Proteins containing BT 96.6 0.038 8.2E-07 60.5 14.2 185 10-300 72-260 (571)
6 PHA02713 hypothetical protein; 94.0 0.14 3.1E-06 55.7 7.4 58 13-80 66-123 (557)
7 PHA02790 Kelch-like protein; P 93.4 0.088 1.9E-06 56.2 4.6 61 15-81 61-121 (480)
8 PF11822 DUF3342: Domain of un 85.7 0.44 9.6E-06 48.7 1.9 49 24-78 54-102 (317)
9 KOG2075 Topoisomerase TOP1-int 66.7 43 0.00093 36.4 10.0 137 13-198 158-294 (521)
10 smart00512 Skp1 Found in Skp1 56.6 14 0.00031 31.1 3.7 44 14-59 42-104 (104)
11 PF01402 RHH_1: Ribbon-helix-h 43.0 34 0.00075 23.4 3.2 34 166-199 5-39 (39)
12 COG3510 CmcI Cephalosporin hyd 42.8 16 0.00036 35.4 2.0 27 400-426 184-212 (237)
13 PHA00617 ribbon-helix-helix do 41.7 40 0.00088 28.0 3.9 36 165-200 44-80 (80)
14 PF10929 DUF2811: Protein of u 39.6 18 0.00039 28.2 1.5 15 412-426 9-23 (57)
15 KOG4682 Uncharacterized conser 34.1 75 0.0016 34.1 5.4 49 12-60 108-156 (488)
16 KOG2016 NEDD8-activating compl 26.3 68 0.0015 34.8 3.6 58 369-426 344-431 (523)
17 PF14363 AAA_assoc: Domain ass 24.3 45 0.00097 28.1 1.5 26 401-426 29-54 (98)
18 PF11123 DNA_Packaging_2: DNA 23.1 42 0.00091 27.8 1.0 16 411-426 31-46 (82)
19 PHA01623 hypothetical protein 23.1 1.3E+02 0.0029 23.0 3.8 35 165-199 18-53 (56)
20 PF12651 RHH_3: Ribbon-helix-h 22.6 1.6E+02 0.0034 21.4 3.9 36 165-200 7-43 (44)
21 PHA01748 hypothetical protein 20.7 1.9E+02 0.0041 22.4 4.3 36 166-201 8-44 (60)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=6e-84 Score=628.56 Aligned_cols=236 Identities=54% Similarity=0.874 Sum_probs=204.6
Q ss_pred CCcchhhcccCChhhHHHHHHHHHHhCCChhhHHHHHHHHHHhhhccccccCCCCcccccccccCCCCCCCCCCCCCcce
Q 014182 157 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHM 236 (429)
Q Consensus 157 ~dWW~eDl~~L~~~lf~rvI~am~s~g~~~~~i~~~l~~Ya~r~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (429)
+|||||||+.|++++|+|||.+|+++||+|++||++|++||+||||++++.......
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~----------------------- 57 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSS----------------------- 57 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccc-----------------------
Confidence 589999999999999999999999999999999999999999999998654221100
Q ss_pred eecCCCCCCchhhhhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccCcccccccc
Q 014182 237 IVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA 316 (429)
Q Consensus 237 ~~~~~~~~~~~~~~~~qr~llEtiv~LLP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LE~RIg~QLe~AtldDLLIPs 316 (429)
..........+||.+||+||+|||.||++|||+|||+|||+|+++++|+.||.+||+|||+|||||||+|||||+
T Consensus 58 -----~~~~~~~~~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~ 132 (258)
T PF03000_consen 58 -----SAESSTSSENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS 132 (258)
T ss_pred -----cccccchhHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence 011223345699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCcccchHHHHHHHHHHHhcccccCCCCCccccccccccccccCCCCchhHHHHHHhhhhhhhhccCCCCCChhHH
Q 014182 317 Y-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF 395 (429)
Q Consensus 317 ~-~~~~tlYDVd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEVA~D~nL~~~KF 395 (429)
. +..+|+||||+|+|||++||.+++..+...... ......++.+++.+||||||+||+|||+|+||+|+||
T Consensus 133 ~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF 204 (258)
T PF03000_consen 133 SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESE--------SESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKF 204 (258)
T ss_pred CCCcccchhhHHHHHHHHHHHHhcccccccccccc--------cccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 4 466699999999999999999866533110000 0011246778999999999999999999999999999
Q ss_pred HHHHHhcCCCcccCCCChhHHHHHhhhhcCCCC
Q 014182 396 QVLAEALPESARTCDDGLYRAIDSYLKVISNFC 428 (429)
Q Consensus 396 ~~LAe~lPd~aR~~hDgLYRAIDiYLK~Hp~l~ 428 (429)
++|||++|++||++|||||||||||||+||+|.
T Consensus 205 ~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls 237 (258)
T PF03000_consen 205 VALAEALPDSARPSHDGLYRAIDIYLKAHPGLS 237 (258)
T ss_pred HHHHHHCCHhhhhccchHHHHHHHHHHHcccCC
Confidence 999999999999999999999999999999974
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.38 E-value=0.00021 Score=59.50 Aligned_cols=69 Identities=29% Similarity=0.430 Sum_probs=57.9
Q ss_pred hhhhcccc--CCCcceEEccCCCCCHHHHHHHHHhhcCcccccC-chhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182 2 NRLIYESR--DSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLT-ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY 78 (429)
Q Consensus 2 ~klv~~~~--~~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt-~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~ 78 (429)
++++...+ +....+|.+.+++ +++|+...+|||+..+.++ ..|+..+...|.+++|. .|...++.||.+
T Consensus 38 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~------~L~~~~~~~l~~ 109 (111)
T PF00651_consen 38 RNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIP------ELKKACEKFLQE 109 (111)
T ss_dssp HHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBH------HHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHh
Confidence 34455442 2333578889998 8899999999999999998 99999999999999999 699999999976
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.04 E-value=0.0008 Score=52.45 Aligned_cols=48 Identities=33% Similarity=0.507 Sum_probs=43.1
Q ss_pred CcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcc
Q 014182 12 ELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTE 61 (429)
Q Consensus 12 ~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE 61 (429)
....+.+.| -.+++|+.+-+|||+.++.+++.|+..+..+|+|++|.+
T Consensus 37 ~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 37 KKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred CCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 356777776 569999999999999999999999999999999999985
No 4
>PHA03098 kelch-like protein; Provisional
Probab=96.63 E-value=0.0078 Score=64.24 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=70.2
Q ss_pred cceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHHHHHHHh
Q 014182 13 LNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLK 92 (429)
Q Consensus 13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~ 92 (429)
..+|+|++ -+++|+.+.+|-|.++++|+..||..|--||.+|+|.+ |....+.||.+.+- ..
T Consensus 47 ~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~~l~~~l~---------~~ 108 (534)
T PHA03098 47 ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCINYIIKIID---------DN 108 (534)
T ss_pred CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhCC---------Hh
Confidence 45788877 78999999999999999999999999999999999994 99999999987542 33
Q ss_pred hhhccchhhhhh---chHHHHHHHHHHHH
Q 014182 93 SCEKLSPWAENL---QIVRRCSESIAWKA 118 (429)
Q Consensus 93 sce~llp~AE~l---~Iv~RCidala~ka 118 (429)
.|-.++..|+.. .+.+.|.+-|+...
T Consensus 109 nc~~~~~~a~~~~~~~L~~~~~~~i~~nf 137 (534)
T PHA03098 109 NCIDIYRFSFFYGCKKLYSAAYNYIRNNI 137 (534)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 455555666653 46667777766543
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.58 E-value=0.038 Score=60.55 Aligned_cols=185 Identities=19% Similarity=0.272 Sum_probs=118.5
Q ss_pred CCCcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCC---hHH
Q 014182 10 DSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSS---WRD 86 (429)
Q Consensus 10 ~~~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~s---W~d 86 (429)
+....+|+|.+ .-++++++...|+|.++++|+-.||--|--||.+|+|++ +..-.-.||.+.+..+ +--
T Consensus 72 e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~ 143 (571)
T KOG4441|consen 72 ESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIR 143 (571)
T ss_pred cccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHH
Confidence 45667899999 778999999999999999999999999999999999995 7778888888765322 011
Q ss_pred HHHHHhhhhccchhhhhhchHHHHHHHHHHHHccCCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCcchhhccc
Q 014182 87 SIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSI 166 (429)
Q Consensus 87 si~vL~sce~llp~AE~l~Iv~RCidala~ka~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~ 166 (429)
.++-+.+|..|...|.+ .|.+..++- |=-||--.
T Consensus 144 ~~a~~~~~~~L~~~a~~-~i~~~F~~v---------------------------------------------~~~eefl~ 177 (571)
T KOG4441|consen 144 RFAELHSCTELLEVADE-YILQHFAEV---------------------------------------------SKTEEFLL 177 (571)
T ss_pred HHHHhcCcHHHHHHHHH-HHHHHHHHH---------------------------------------------hccHHhhC
Confidence 22223455555544433 112211110 11156666
Q ss_pred CChhhHHHHHHHHHHhCCChhhHHHHHHHHHHhhhccccccCCCCcccccccccCCCCCCCCCCCCCcceeecCCCCCCc
Q 014182 167 LRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPP 246 (429)
Q Consensus 167 L~~~lf~rvI~am~s~g~~~~~i~~~l~~Ya~r~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (429)
|+.+.+..+|..-.-..-+++.+.++++.+.+.-.
T Consensus 178 L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~--------------------------------------------- 212 (571)
T KOG4441|consen 178 LSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDF--------------------------------------------- 212 (571)
T ss_pred CCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCH---------------------------------------------
Confidence 88777777766544443466666666655544211
Q ss_pred hhhhhhhHHHHHHHHHh-CCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014182 247 TVQAKDQRMIIESLISI-IPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRV 300 (429)
Q Consensus 247 ~~~~~~qr~llEtiv~L-LP~ek~~vsc~FL~~LLR~A~~l~as~~cr~~LE~RI 300 (429)
..+++.+.+-...+ +|. ++-.||.......-.+...+.||.-|..=.
T Consensus 213 ---~~R~~~~~~ll~~vr~~l----l~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 213 ---EEREEHLPALLEAVRLPL----LPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred ---hhHHHHHHHHHHhcCccC----CCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 01122222221111 233 788999999999999999999988875533
No 6
>PHA02713 hypothetical protein; Provisional
Probab=93.97 E-value=0.14 Score=55.73 Aligned_cols=58 Identities=16% Similarity=0.352 Sum_probs=52.0
Q ss_pred cceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhh
Q 014182 13 LNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 80 (429)
Q Consensus 13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~v 80 (429)
..+|+|.++ .+++|+.+.+|.|.++ |++.||-.|--||.+|+|+ .|....+.||.+.+
T Consensus 66 ~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~------~l~~~C~~~l~~~l 123 (557)
T PHA02713 66 VTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLID------DLVTDCESYIKDYT 123 (557)
T ss_pred CceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHH------HHHHHHHHHHHhhC
Confidence 467999887 4899999999999876 7999999999999999999 48999999998765
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=93.42 E-value=0.088 Score=56.15 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=52.4
Q ss_pred eEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhc
Q 014182 15 KIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL 81 (429)
Q Consensus 15 ~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl 81 (429)
+|.|...--.+++++.+.+|-|.++++||..||-.+-.||.||+|+ -++.....||.+.+-
T Consensus 61 ~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~------~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 61 PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVE------FIIYTCINFILRDFR 121 (480)
T ss_pred ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChH------HHHHHHHHHHHhhCC
Confidence 4555322335899999999999999999999999999999999999 488999999998663
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=85.73 E-value=0.44 Score=48.71 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhh
Q 014182 24 GPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSY 78 (429)
Q Consensus 24 GaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~ 78 (429)
.-..||.-.+++.|-...|||.||+++---++||+|++ |++.+=.|...
T Consensus 54 Dv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~y~~~ 102 (317)
T PF11822_consen 54 DVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQYCHD 102 (317)
T ss_pred ChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHHHHHH
Confidence 34789999999999999999999999999999999994 77787777644
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=66.72 E-value=43 Score=36.44 Aligned_cols=137 Identities=21% Similarity=0.192 Sum_probs=93.1
Q ss_pred cceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCcccccCCChHHHHHHHhhhhhcCChHHHHHHHh
Q 014182 13 LNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLK 92 (429)
Q Consensus 13 ~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~gNLi~ktE~fL~~~vl~sW~dsi~vL~ 92 (429)
..+|+++|+ -+.+|+---||=|+-.+.+.+.||-.+.-+|.= |--+-|..++-+||+.-.+. +....-|-
T Consensus 158 s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~AkK------Y~VpaLer~CVkflr~~l~~--~naf~~L~ 227 (521)
T KOG2075|consen 158 SLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAKK------YLVPALERQCVKFLRKNLMA--DNAFLELF 227 (521)
T ss_pred CceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhcCC--hHHHHHHH
Confidence 568888887 489999999999999999999999888766642 33345778888888875542 34444455
Q ss_pred hhhccchhhhhhchHHHHHHHHHHHHccCCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCcchhhcccCChhhH
Q 014182 93 SCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHF 172 (429)
Q Consensus 93 sce~llp~AE~l~Iv~RCidala~ka~~d~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~lf 172 (429)
+|-.+ .++=.+.++|++.|.-.. .+. -..=||-|.-.+ .++|
T Consensus 228 q~A~l---f~ep~Li~~c~e~id~~~-~~a---------------------------------l~~EGf~did~~-~dt~ 269 (521)
T KOG2075|consen 228 QRAKL---FDEPSLISICLEVIDKSF-EDA---------------------------------LTPEGFCDIDST-RDTY 269 (521)
T ss_pred HHHHh---hcCHHHHHHHHHHhhhHH-Hhh---------------------------------hCccceeehhhH-HHHH
Confidence 55333 455678999999987643 110 011256666555 7888
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHH
Q 014182 173 VRVVTAIKVKGMRFELIGAAIMHYAA 198 (429)
Q Consensus 173 ~rvI~am~s~g~~~~~i~~~l~~Ya~ 198 (429)
..|++- .....+.-.+.+++..|++
T Consensus 270 ~evl~r-~~l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 270 EEVLRR-DTLEAREFRLFEAALKWAE 294 (521)
T ss_pred HHHHhh-cccchhHHHHHHHHHhhcc
Confidence 777643 2233566677888877776
No 10
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=56.63 E-value=14 Score=31.05 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=30.4
Q ss_pred ceEEccCCCCCHHHHHHHHHhhcCcc---c----------------ccCchhHHHHHhhHHhhcC
Q 014182 14 NKIVLDDLPGGPEAFELAAKFCYGIA---V----------------DLTASNISGLRCAAEYLEM 59 (429)
Q Consensus 14 ~~i~L~d~PGGaeaFEl~akFCYG~~---i----------------~lt~~NVa~LrCAAeyLeM 59 (429)
..|.|++++ +.+++.+.+||+--+ . .+...++--|-.||.||++
T Consensus 42 ~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 42 NPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred CCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467777777 689999999997211 0 1445566777777777764
No 11
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=43.00 E-value=34 Score=23.39 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=29.1
Q ss_pred cCChhhHHHHHHHHHHhCC-ChhhHHHHHHHHHHh
Q 014182 166 ILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAK 199 (429)
Q Consensus 166 ~L~~~lf~rvI~am~s~g~-~~~~i~~~l~~Ya~r 199 (429)
.|+-+.++++=...+..|+ ..++|-.+|..|..+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 4677888888888899998 888999999999864
No 12
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=42.82 E-value=16 Score=35.45 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=22.6
Q ss_pred HhcC--CCcccCCCChhHHHHHhhhhcCC
Q 014182 400 EALP--ESARTCDDGLYRAIDSYLKVISN 426 (429)
Q Consensus 400 e~lP--d~aR~~hDgLYRAIDiYLK~Hp~ 426 (429)
+-+| +..+..-+|=|+||.-|||.||+
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~ 212 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQ 212 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCc
Confidence 4556 66677799999999999999994
No 13
>PHA00617 ribbon-helix-helix domain containing protein
Probab=41.67 E-value=40 Score=27.98 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=33.1
Q ss_pred ccCChhhHHHHHHHHHHhCC-ChhhHHHHHHHHHHhh
Q 014182 165 SILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAKW 200 (429)
Q Consensus 165 ~~L~~~lf~rvI~am~s~g~-~~~~i~~~l~~Ya~r~ 200 (429)
..|+-++.+|+-.-.+..|. ++++|-++|..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 57899999999999999998 9999999999999876
No 14
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=39.56 E-value=18 Score=28.19 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=14.0
Q ss_pred ChhHHHHHhhhhcCC
Q 014182 412 GLYRAIDSYLKVISN 426 (429)
Q Consensus 412 gLYRAIDiYLK~Hp~ 426 (429)
-||+|+.-||+.||+
T Consensus 9 ~L~~~m~~fie~hP~ 23 (57)
T PF10929_consen 9 DLHQAMKDFIETHPN 23 (57)
T ss_pred HHHHHHHHHHHcCCC
Confidence 489999999999997
No 15
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=34.10 E-value=75 Score=34.07 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=44.6
Q ss_pred CcceEEccCCCCCHHHHHHHHHhhcCcccccCchhHHHHHhhHHhhcCc
Q 014182 12 ELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEMT 60 (429)
Q Consensus 12 ~~~~i~L~d~PGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMt 60 (429)
+...++|.|=--...+|..|-+==|-..|+|.++-|+.+-.||.+|...
T Consensus 108 ~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqld 156 (488)
T KOG4682|consen 108 NIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLD 156 (488)
T ss_pred ceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHh
Confidence 3456788898899999999999999999999999999999999999887
No 16
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=26.30 E-value=68 Score=34.77 Aligned_cols=58 Identities=28% Similarity=0.426 Sum_probs=43.5
Q ss_pred hHHHHHHhhhhhhhhccCCC----------------CCChhHHHHHHHhcCCCcc-----cCCCC---------hhHHHH
Q 014182 369 AKMRVARLVDGYLTEVARDR----------------NLSLTKFQVLAEALPESAR-----TCDDG---------LYRAID 418 (429)
Q Consensus 369 ~~~~VakLvD~YLaEVA~D~----------------nL~~~KF~~LAe~lPd~aR-----~~hDg---------LYRAID 418 (429)
-..+|.+.+-.+|.+++++| +|++-.|..|+|-.-++.+ .+.|. +|||+|
T Consensus 344 D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavd 423 (523)
T KOG2016|consen 344 DALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVD 423 (523)
T ss_pred hHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHH
Confidence 45789999999999999884 4666667778776654444 33344 699999
Q ss_pred HhhhhcCC
Q 014182 419 SYLKVISN 426 (429)
Q Consensus 419 iYLK~Hp~ 426 (429)
.||+.|-.
T Consensus 424 rfl~~~gk 431 (523)
T KOG2016|consen 424 RFLKEKGK 431 (523)
T ss_pred HHHHHhcC
Confidence 99998854
No 17
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=24.28 E-value=45 Score=28.12 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=21.2
Q ss_pred hcCCCcccCCCChhHHHHHhhhhcCC
Q 014182 401 ALPESARTCDDGLYRAIDSYLKVISN 426 (429)
Q Consensus 401 ~lPd~aR~~hDgLYRAIDiYLK~Hp~ 426 (429)
.+|++-......||+|+.+||.+...
T Consensus 29 ~I~E~~g~~~N~ly~a~~~YL~s~~s 54 (98)
T PF14363_consen 29 VIPEFDGLSRNELYDAAQAYLSSKIS 54 (98)
T ss_pred EEEeCCCccccHHHHHHHHHHhhccC
Confidence 46666667888999999999988764
No 18
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.08 E-value=42 Score=27.75 Aligned_cols=16 Identities=31% Similarity=0.300 Sum_probs=13.9
Q ss_pred CChhHHHHHhhhhcCC
Q 014182 411 DGLYRAIDSYLKVISN 426 (429)
Q Consensus 411 DgLYRAIDiYLK~Hp~ 426 (429)
-+||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3799999999999963
No 19
>PHA01623 hypothetical protein
Probab=23.07 E-value=1.3e+02 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=31.4
Q ss_pred ccCChhhHHHHHHHHHHhCC-ChhhHHHHHHHHHHh
Q 014182 165 SILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAK 199 (429)
Q Consensus 165 ~~L~~~lf~rvI~am~s~g~-~~~~i~~~l~~Ya~r 199 (429)
..|+-++++++-.-...+|+ +.++|-.+|..|..+
T Consensus 18 Vrldeel~~~Ld~y~~~~g~~rSe~IreAI~~yL~~ 53 (56)
T PHA01623 18 IYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQK 53 (56)
T ss_pred EEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 46888999999999999998 899999999999865
No 20
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=22.55 E-value=1.6e+02 Score=21.39 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=30.6
Q ss_pred ccCChhhHHHHHHHHHHhCC-ChhhHHHHHHHHHHhh
Q 014182 165 SILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAKW 200 (429)
Q Consensus 165 ~~L~~~lf~rvI~am~s~g~-~~~~i~~~l~~Ya~r~ 200 (429)
..|+.++++++=.-=+..|+ ..++|-+||-.|.+++
T Consensus 7 ~~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 7 FSLDKELYEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred EecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 35788999998887788898 8889999999998874
No 21
>PHA01748 hypothetical protein
Probab=20.74 E-value=1.9e+02 Score=22.38 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=31.3
Q ss_pred cCChhhHHHHHHHHHHhCC-ChhhHHHHHHHHHHhhh
Q 014182 166 ILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAKWL 201 (429)
Q Consensus 166 ~L~~~lf~rvI~am~s~g~-~~~~i~~~l~~Ya~r~l 201 (429)
.||-++++++-.-.+..|+ ++++|-.++..|.+...
T Consensus 8 rLp~el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~~~ 44 (60)
T PHA01748 8 KIEEDLLELLDRYAIKHGLNRSEAIRKAIEKMVKDEL 44 (60)
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5788899999999999998 89999999999988654
Done!