Query 014185
Match_columns 429
No_of_seqs 247 out of 1436
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:40:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.2E-57 2.7E-62 450.2 38.8 331 64-421 81-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 6.9E-56 1.5E-60 439.6 33.5 316 55-422 110-451 (482)
3 cd05475 nucellin_like Nucellin 100.0 1.1E-54 2.5E-59 406.9 33.3 273 66-419 1-273 (273)
4 cd05478 pepsin_A Pepsin A, asp 100.0 8.1E-55 1.8E-59 417.1 31.5 300 63-416 6-317 (317)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 3E-54 6.4E-59 414.4 31.8 292 66-420 2-326 (326)
6 cd05486 Cathespin_E Cathepsin 100.0 1.7E-54 3.7E-59 414.7 29.5 298 68-416 1-316 (316)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 4.3E-54 9.3E-59 413.7 32.0 304 63-416 2-325 (325)
8 cd05472 cnd41_like Chloroplast 100.0 1.2E-53 2.5E-58 406.1 34.4 289 67-419 1-299 (299)
9 cd05477 gastricsin Gastricsins 100.0 1.3E-53 2.8E-58 409.2 32.7 301 65-417 1-318 (318)
10 KOG1339 Aspartyl protease [Pos 100.0 2.5E-53 5.4E-58 417.6 35.4 337 57-420 36-397 (398)
11 cd05488 Proteinase_A_fungi Fun 100.0 1.3E-53 2.8E-58 409.1 31.7 302 63-416 6-320 (320)
12 cd06098 phytepsin Phytepsin, a 100.0 2.9E-53 6.3E-58 406.0 33.4 291 62-416 5-317 (317)
13 cd05487 renin_like Renin stimu 100.0 1.9E-53 4.1E-58 409.0 31.9 303 63-417 4-326 (326)
14 PTZ00147 plasmepsin-1; Provisi 100.0 5.6E-53 1.2E-57 415.8 32.2 309 54-418 128-450 (453)
15 cd05485 Cathepsin_D_like Cathe 100.0 5.2E-53 1.1E-57 406.1 31.0 305 62-416 6-329 (329)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.3E-52 7.1E-57 409.4 33.2 309 54-418 127-449 (450)
17 cd05473 beta_secretase_like Be 100.0 4.5E-51 9.9E-56 398.2 32.9 317 67-427 3-355 (364)
18 cd05489 xylanase_inhibitor_I_l 100.0 1.4E-49 3.1E-54 384.5 35.5 325 74-417 2-361 (362)
19 cd05476 pepsin_A_like_plant Ch 100.0 8E-50 1.7E-54 372.9 30.1 247 67-419 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 6.1E-50 1.3E-54 376.5 27.6 266 68-416 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 4E-48 8.6E-53 367.8 28.2 267 67-417 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 5E-49 1.1E-53 377.9 18.6 300 67-417 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.8E-45 3.8E-50 347.5 29.8 266 68-416 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.2E-27 2.5E-32 205.9 15.5 156 68-240 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 2.7E-24 5.9E-29 184.9 14.4 151 262-416 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 2.6E-22 5.7E-27 161.2 13.3 108 70-203 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 8.4E-06 1.8E-10 63.1 7.4 92 67-204 2-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.4 0.0012 2.6E-08 53.5 9.1 100 57-204 3-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.8 0.0086 1.9E-07 45.3 8.5 89 70-204 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.8 0.088 1.9E-06 42.8 9.2 31 65-97 14-44 (124)
31 PF11925 DUF3443: Protein of u 94.8 0.53 1.1E-05 44.9 11.9 31 67-97 23-58 (370)
32 cd05479 RP_DDI RP_DDI; retrope 93.9 0.24 5.1E-06 40.3 6.9 26 389-414 99-124 (124)
33 COG3577 Predicted aspartyl pro 93.6 0.49 1.1E-05 41.3 8.4 86 54-179 94-179 (215)
34 cd05484 retropepsin_like_LTR_2 93.0 0.11 2.4E-06 39.5 3.4 28 68-97 1-28 (91)
35 cd06095 RP_RTVL_H_like Retrope 92.3 0.86 1.9E-05 34.2 7.4 25 71-97 2-26 (86)
36 PF13975 gag-asp_proteas: gag- 90.5 0.5 1.1E-05 34.2 4.3 32 64-97 5-36 (72)
37 PF08284 RVP_2: Retroviral asp 90.3 1.8 3.8E-05 35.7 7.9 29 389-417 104-132 (135)
38 PF15284 PAGK: Phage-encoded v 89.6 0.24 5.1E-06 33.8 1.7 33 5-37 1-33 (61)
39 TIGR03698 clan_AA_DTGF clan AA 87.1 1.5 3.2E-05 34.6 5.1 24 389-412 84-107 (107)
40 TIGR02281 clan_AA_DTGA clan AA 86.3 1.7 3.7E-05 35.0 5.2 35 261-303 10-44 (121)
41 PF00077 RVP: Retroviral aspar 85.8 1.2 2.7E-05 34.2 4.1 27 69-97 7-33 (100)
42 PF13650 Asp_protease_2: Aspar 85.4 1.4 3E-05 32.9 4.2 29 270-303 3-31 (90)
43 PF13975 gag-asp_proteas: gag- 84.5 1.9 4.2E-05 31.1 4.3 29 270-303 13-41 (72)
44 cd05484 retropepsin_like_LTR_2 81.5 2.6 5.7E-05 31.8 4.3 30 269-303 4-33 (91)
45 cd05482 HIV_retropepsin_like R 78.3 3 6.4E-05 31.5 3.5 25 71-97 2-26 (87)
46 cd05483 retropepsin_like_bacte 77.5 4.5 9.7E-05 30.4 4.5 29 270-303 7-35 (96)
47 cd06095 RP_RTVL_H_like Retrope 75.6 4.5 9.8E-05 30.2 3.9 29 270-303 3-31 (86)
48 PF00077 RVP: Retroviral aspar 64.3 7.7 0.00017 29.7 3.1 27 269-300 9-35 (100)
49 TIGR03698 clan_AA_DTGF clan AA 63.3 50 0.0011 25.8 7.6 26 70-95 2-32 (107)
50 cd05481 retropepsin_like_LTR_1 61.4 10 0.00022 28.9 3.2 31 270-304 3-33 (93)
51 PF12384 Peptidase_A2B: Ty3 tr 58.3 14 0.0003 31.3 3.6 29 69-97 34-62 (177)
52 PF09668 Asp_protease: Asparty 57.2 17 0.00037 29.4 3.9 29 270-303 29-57 (124)
53 COG3577 Predicted aspartyl pro 56.6 26 0.00056 30.9 5.1 36 260-303 103-138 (215)
54 PF09668 Asp_protease: Asparty 54.6 22 0.00047 28.8 4.1 30 66-97 23-52 (124)
55 PF02160 Peptidase_A3: Caulifl 53.8 27 0.00058 30.8 4.9 28 388-416 90-117 (201)
56 COG5550 Predicted aspartyl pro 50.4 13 0.00027 29.9 2.1 22 283-304 28-50 (125)
57 PF15240 Pro-rich: Proline-ric 50.3 5.7 0.00012 34.0 0.2 23 15-37 1-23 (179)
58 KOG0012 DNA damage inducible p 44.5 1.1E+02 0.0023 29.5 7.5 39 375-417 307-346 (380)
59 cd05481 retropepsin_like_LTR_1 44.0 18 0.0004 27.5 2.1 24 72-97 3-27 (93)
60 PF12384 Peptidase_A2B: Ty3 tr 36.7 86 0.0019 26.7 5.1 24 281-304 45-68 (177)
61 cd05476 pepsin_A_like_plant Ch 33.2 84 0.0018 28.9 5.2 45 53-97 133-193 (265)
62 cd05475 nucellin_like Nucellin 30.7 77 0.0017 29.3 4.5 43 54-97 146-194 (273)
63 TIGR03656 IsdC heme uptake pro 26.7 59 0.0013 29.0 2.7 10 65-74 65-74 (217)
64 cd05489 xylanase_inhibitor_I_l 26.1 85 0.0018 30.6 4.1 16 82-97 231-246 (362)
65 cd05472 cnd41_like Chloroplast 25.4 77 0.0017 29.7 3.6 45 53-97 133-188 (299)
66 cd05471 pepsin_like Pepsin-lik 24.9 1.3E+02 0.0027 27.6 4.9 44 52-97 168-219 (283)
67 PF08284 RVP_2: Retroviral asp 24.5 1.1E+02 0.0023 25.1 3.8 29 67-97 21-49 (135)
68 PF12508 DUF3714: Protein of u 23.3 3.7E+02 0.0079 23.8 7.0 50 261-312 101-151 (200)
69 cd00303 retropepsin_like Retro 22.3 82 0.0018 21.9 2.5 22 71-94 2-23 (92)
70 cd06098 phytepsin Phytepsin, a 21.0 1.1E+02 0.0024 29.0 3.7 32 66-97 188-227 (317)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.2e-57 Score=450.23 Aligned_cols=331 Identities=27% Similarity=0.519 Sum_probs=270.9
Q ss_pred CCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCC----ccCCCcccccCCCCCCCCCCCCC
Q 014185 64 PLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHP 139 (429)
Q Consensus 64 ~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S----~~~C~~~~C~~~~~~~t~~~~~~ 139 (429)
.+++|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|||++| .++|.++.|..++. ...|..+
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence 3668999999999999999999999999999999 999999888999999998 58999999987653 2346544
Q ss_pred CCCCeeEeEeCCCCeEEEEEEEEEEEEeecCC-cccccceEEeeeeecCCCCCCCCCCCceEEecCCCCCcHHHHHhhcC
Q 014185 140 NDQCDYEIEYGDGGSSIGALVTDLFPLRFSNG-SVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYG 218 (429)
Q Consensus 140 ~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g-~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g 218 (429)
+.|.|.+.|++|+.+.|.+++|+|+|+...+ ...++++.|||++...+.+. ...+||||||++..|++.||..+
T Consensus 158 -~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~---~~~~GilGLG~~~~Sl~sql~~~- 232 (431)
T PLN03146 158 -NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD---EKGSGIVGLGGGPLSLISQLGSS- 232 (431)
T ss_pred -CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc---CCCceeEecCCCCccHHHHhhHh-
Confidence 5799999999997789999999999943211 24688999999998744321 35899999999999999999763
Q ss_pred CccceEEEEeCC-----CCceeEEeCCCCCCCC-CcEEeecccCCCCCCCEEeeecEEEECCEEeccCC--------CcE
Q 014185 219 LIRNVIGHCIGQ-----NGRGVLFLGDGKVPSS-GVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKD--------LTL 284 (429)
Q Consensus 219 ~i~~~Fsl~l~~-----~~~G~l~~Gd~~~~~g-~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~--------~~a 284 (429)
+.++||+||.+ ...|.|+||..+++.+ .+.|+|++.... ..+|.|.|++|+||++.+..+. ..+
T Consensus 233 -~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ 310 (431)
T PLN03146 233 -IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNI 310 (431)
T ss_pred -hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcE
Confidence 55699999963 2479999996555554 589999985421 3789999999999999876532 479
Q ss_pred EEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCC
Q 014185 285 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPE 364 (429)
Q Consensus 285 iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~ 364 (429)
||||||++++||+++|++|.+++...+...... .....+..||+... ...+|+|+|+|++ +++.|+++
T Consensus 311 iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~C~~~~~------~~~~P~i~~~F~G----a~~~l~~~ 378 (431)
T PLN03146 311 IIDSGTTLTLLPSDFYSELESAVEEAIGGERVS--DPQGLLSLCYSSTS------DIKLPIITAHFTG----ADVKLQPL 378 (431)
T ss_pred EEeCCccceecCHHHHHHHHHHHHHHhccccCC--CCCCCCCccccCCC------CCCCCeEEEEECC----CeeecCcc
Confidence 999999999999999999999998877532111 12234567987421 1358999999986 79999999
Q ss_pred eEEEEeCCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecCCCCC
Q 014185 365 AYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNT 421 (429)
Q Consensus 365 ~y~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c~~ 421 (429)
+|+++..++..|+++.... +.||||+.|||++|+|||++++|||||+.+|+.
T Consensus 379 ~~~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 379 NTFVKVSEDLVCFAMIPTS-----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred eeEEEcCCCcEEEEEecCC-----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 9999877778899887542 369999999999999999999999999999975
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6.9e-56 Score=439.59 Aligned_cols=316 Identities=21% Similarity=0.411 Sum_probs=252.7
Q ss_pred EEeeccCCCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCC
Q 014185 55 FLRALGSIYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPP 134 (429)
Q Consensus 55 ~~p~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~ 134 (429)
..|+. .|.+.+|+++|+||||||+|.|+|||||++|||+|. .|..|.++.++.||+++| +|+
T Consensus 110 ~~~l~--n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~S---------------STy 171 (482)
T PTZ00165 110 QQDLL--NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKS---------------STY 171 (482)
T ss_pred ceecc--cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCcccc---------------CCc
Confidence 34444 567889999999999999999999999999999998 898655568899999999 355
Q ss_pred CCCCCC-CCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCC------
Q 014185 135 RCKHPN-DQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ 207 (429)
Q Consensus 135 ~~~~~~-~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------ 207 (429)
.....+ ....+.+.|++| ++.|.+++|+|+| |++.++++.||+++..... .+....+|||||||++.
T Consensus 172 ~~~~~~~~~~~~~i~YGsG-s~~G~l~~DtV~i----g~l~i~~q~FG~a~~~s~~-~f~~~~~DGILGLg~~~~s~~s~ 245 (482)
T PTZ00165 172 TKLKLGDESAETYIQYGTG-ECVLALGKDTVKI----GGLKVKHQSIGLAIEESLH-PFADLPFDGLVGLGFPDKDFKES 245 (482)
T ss_pred EecCCCCccceEEEEeCCC-cEEEEEEEEEEEE----CCEEEccEEEEEEEecccc-ccccccccceeecCCCccccccc
Confidence 431110 122578999999 7889999999999 8899999999999976332 23335789999999864
Q ss_pred ---CcHHHHHhhcCCc-cceEEEEeCC--CCceeEEeC--CCCCC--CCCcEEeecccCCCCCCCEEeeecEEEECCEEe
Q 014185 208 ---ISIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLG--DGKVP--SSGVAWTPMLQNSADLKHYILGPAELLYSGKSC 277 (429)
Q Consensus 208 ---~s~~~~l~~~g~i-~~~Fsl~l~~--~~~G~l~~G--d~~~~--~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~ 277 (429)
.+++++|++||+| +++||+||.+ +.+|.|+|| |+.++ .+++.|+|+... .+|.|.+++|+++++.+
T Consensus 246 ~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~----~yW~i~l~~i~vgg~~~ 321 (482)
T PTZ00165 246 KKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST----DYWEIEVVDILIDGKSL 321 (482)
T ss_pred CCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc----ceEEEEeCeEEECCEEe
Confidence 4689999999999 9999999974 347999999 65555 578999999875 89999999999999776
Q ss_pred cc--CCCcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCC-
Q 014185 278 GL--KDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRR- 354 (429)
Q Consensus 278 ~~--~~~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~- 354 (429)
.. ....+++||||+++++|++++++|.++++.. . .|... +.+|+|+|+|++..
T Consensus 322 ~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~------~---------~C~~~---------~~lP~itf~f~g~~g 377 (482)
T PTZ00165 322 GFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE------E---------DCSNK---------DSLPRISFVLEDVNG 377 (482)
T ss_pred eecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc------c---------ccccc---------ccCCceEEEECCCCC
Confidence 54 4678999999999999999999999988532 1 24331 24799999998521
Q ss_pred CceEEEeCCCeEEEEe----CCCcEEEE-EEcCCCC-CCCCceeEcccceeceEEEEeCCCCEEEEecCCCCCc
Q 014185 355 NSVRLVVPPEAYLVIS----GRKNVCLG-ILNGSEA-EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTL 422 (429)
Q Consensus 355 ~g~~~~l~~~~y~~~~----~~~~~C~~-~~~~~~~-~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c~~~ 422 (429)
..+++.|+|++|+.+. .++..|+. +...... +.++.||||++|||++|+|||.+++|||||+++|+..
T Consensus 378 ~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 378 RKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred ceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 1358999999999873 23468964 5432211 2346899999999999999999999999999998753
No 3
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-54 Score=406.91 Aligned_cols=273 Identities=60% Similarity=1.121 Sum_probs=231.6
Q ss_pred ceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCee
Q 014185 66 GYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 145 (429)
Q Consensus 66 ~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~ 145 (429)
++|+++|.||||||++.|++||||+++||+|+.+|..| .|.|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c--------------------------------------~c~~ 42 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC--------------------------------------QCDY 42 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------------------------------cCcc
Confidence 47999999999999999999999999999884245443 2479
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCCCcHHHHHhhcCCccceEE
Q 014185 146 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIG 225 (429)
Q Consensus 146 ~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~Fs 225 (429)
++.|++++.+.|.+++|+|+|...+++..++++.|||+..............+||||||++..++++||+++++|+++||
T Consensus 43 ~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs 122 (273)
T cd05475 43 EIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIG 122 (273)
T ss_pred EeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEE
Confidence 99999877999999999999976556667889999999876443322335789999999999999999999998899999
Q ss_pred EEeCCCCceeEEeCCCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEeccCCCcEEEecCCcceeecHHHHHHHHH
Q 014185 226 HCIGQNGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIVS 305 (429)
Q Consensus 226 l~l~~~~~G~l~~Gd~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l~~ 305 (429)
+||.++.+|.|+||+..++.++++|+|+...+ ...+|.|++.+|+|+++........++|||||++++||+++|
T Consensus 123 ~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y----- 196 (273)
T cd05475 123 HCLSSNGGGFLFFGDDLVPSSGVTWTPMRRES-QKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY----- 196 (273)
T ss_pred EEccCCCCeEEEECCCCCCCCCeeecccccCC-CCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc-----
Confidence 99998778999999877788999999998753 137999999999999987666667899999999999999876
Q ss_pred HHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEeCCCcEEEEEEcCCCC
Q 014185 306 LIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEA 385 (429)
Q Consensus 306 ~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~ 385 (429)
+|+|+|+|++...+++++|++++|+....++..|++++...+.
T Consensus 197 -------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~ 239 (273)
T cd05475 197 -------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEI 239 (273)
T ss_pred -------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCc
Confidence 2578999987211279999999999876667789999876543
Q ss_pred CCCCceeEcccceeceEEEEeCCCCEEEEecCCC
Q 014185 386 EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 419 (429)
Q Consensus 386 ~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c 419 (429)
.....||||+.|||++|+|||++++|||||+++|
T Consensus 240 ~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 240 GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 3345899999999999999999999999999999
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=8.1e-55 Score=417.09 Aligned_cols=300 Identities=20% Similarity=0.363 Sum_probs=248.4
Q ss_pred CCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCC
Q 014185 63 YPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQ 142 (429)
Q Consensus 63 ~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~ 142 (429)
+.+..|+++|+||||+|++.|+|||||+++||+|. .|..|.++.++.|+|++| +|++. ..
T Consensus 6 ~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~S---------------st~~~----~~ 65 (317)
T cd05478 6 YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQS---------------STYQS----TG 65 (317)
T ss_pred ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCC---------------cceee----CC
Confidence 35789999999999999999999999999999998 898766667899999998 35553 56
Q ss_pred CeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCC------CcHHHHHhh
Q 014185 143 CDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLRE 216 (429)
Q Consensus 143 ~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~~l~~ 216 (429)
+.+.+.|++| ++.|.+++|+|+| |+..++++.|||+....+.. ......+||||||++. .+++++|++
T Consensus 66 ~~~~~~yg~g-s~~G~~~~D~v~i----g~~~i~~~~fg~~~~~~~~~-~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 139 (317)
T cd05478 66 QPLSIQYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSF-FYYAPFDGILGLAYPSIASSGATPVFDNMMS 139 (317)
T ss_pred cEEEEEECCc-eEEEEEeeeEEEE----CCEEECCEEEEEEEecCccc-cccccccceeeeccchhcccCCCCHHHHHHh
Confidence 7999999999 5899999999999 88889999999998763321 1123589999999864 459999999
Q ss_pred cCCc-cceEEEEeCCC--CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEecc-CCCcEEEecCC
Q 014185 217 YGLI-RNVIGHCIGQN--GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSGA 290 (429)
Q Consensus 217 ~g~i-~~~Fsl~l~~~--~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-~~~~aiiDSGt 290 (429)
+|+| +++||+||.++ ..|.|+|| |.+++.|+++|+|+... .+|.|.+++|+|+++.+.. .+..++|||||
T Consensus 140 ~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~----~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGt 215 (317)
T cd05478 140 QGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE----TYWQITVDSVTINGQVVACSGGCQAIVDTGT 215 (317)
T ss_pred CCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC----cEEEEEeeEEEECCEEEccCCCCEEEECCCc
Confidence 9999 89999999864 46999999 77889999999999764 8999999999999998765 34689999999
Q ss_pred cceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEe
Q 014185 291 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS 370 (429)
Q Consensus 291 ~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~ 370 (429)
++++||++++++|.+++++... .. .++..+|... ..+|.|+|+|++ ..++||+++|+.+.
T Consensus 216 s~~~lp~~~~~~l~~~~~~~~~--------~~----~~~~~~C~~~----~~~P~~~f~f~g----~~~~i~~~~y~~~~ 275 (317)
T cd05478 216 SLLVGPSSDIANIQSDIGASQN--------QN----GEMVVNCSSI----SSMPDVVFTING----VQYPLPPSAYILQD 275 (317)
T ss_pred hhhhCCHHHHHHHHHHhCCccc--------cC----CcEEeCCcCc----ccCCcEEEEECC----EEEEECHHHheecC
Confidence 9999999999999998865321 11 1233333322 258999999965 89999999999864
Q ss_pred CCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 371 GRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 371 ~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
+..|++.+...+ ....||||++|||++|+|||++++|||||+
T Consensus 276 --~~~C~~~~~~~~--~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --QGSCTSGFQSMG--LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCEEeEEEEeCC--CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 567986555432 235799999999999999999999999996
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3e-54 Score=414.41 Aligned_cols=292 Identities=25% Similarity=0.510 Sum_probs=241.9
Q ss_pred ceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCC----ccCCCcccccCCCCCCCCCCCCCCC
Q 014185 66 GYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPND 141 (429)
Q Consensus 66 ~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S----~~~C~~~~C~~~~~~~t~~~~~~~~ 141 (429)
+.|+++|.||||+|++.|+|||||+++||+|. +|..|..+.++.|+|++| .++|.+..|.. ...|. ++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~--~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCL--NN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCC--CC
Confidence 57999999999999999999999999999999 999998777899999988 48999999954 33453 26
Q ss_pred CCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccc-------cceEEeeeeecCCCCCCCCCCCceEEecCCCCC----cH
Q 014185 142 QCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFN-------VPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI----SI 210 (429)
Q Consensus 142 ~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~-------~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~----s~ 210 (429)
.|.|.+.|++|+.+.|.+++|+|+| ++..+ .++.|||+....+.+. ....+||||||++.. +.
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~l----g~~~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~~~~~~~ 147 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSF----ESYLNSNSEKESFKKIFGCHTHETNLFL--TQQATGILGLSLTKNNGLPTP 147 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEe----ccCCCCccccccccEEeccCccccCccc--ccccceEEEccCCcccccCch
Confidence 7999999999977999999999999 55433 2578999988644322 256899999999753 23
Q ss_pred HHHHhhcCCc-c--ceEEEEeCCCCceeEEeC--CCCCCC----------CCcEEeecccCCCCCCCEEeeecEEEECCE
Q 014185 211 VSQLREYGLI-R--NVIGHCIGQNGRGVLFLG--DGKVPS----------SGVAWTPMLQNSADLKHYILGPAELLYSGK 275 (429)
Q Consensus 211 ~~~l~~~g~i-~--~~Fsl~l~~~~~G~l~~G--d~~~~~----------g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~ 275 (429)
..+|.+++.+ . ++||+||.++ .|.|+|| |+.++. +++.|+|+... .+|.|.+++|+++++
T Consensus 148 ~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~----~~y~v~l~~i~vg~~ 222 (326)
T cd06096 148 IILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK----YYYYVKLEGLSVYGT 222 (326)
T ss_pred hHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC----ceEEEEEEEEEEccc
Confidence 4456677666 4 9999999964 6999999 555655 79999999875 799999999999987
Q ss_pred E---eccCCCcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeC
Q 014185 276 S---CGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTN 352 (429)
Q Consensus 276 ~---~~~~~~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~ 352 (429)
. .......++|||||++++||+++|++|.+++ |+|+|+|++
T Consensus 223 ~~~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------------P~i~~~f~~ 266 (326)
T cd06096 223 TSNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------------PTITIIFEN 266 (326)
T ss_pred ccceecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------------CcEEEEEcC
Confidence 5 2335678999999999999999999987766 478999986
Q ss_pred CCCceEEEeCCCeEEEEeCCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecCCCC
Q 014185 353 RRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCN 420 (429)
Q Consensus 353 ~~~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c~ 420 (429)
++.++++|++|+++..+..+|+++.. . .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 267 ---g~~~~i~p~~y~~~~~~~~c~~~~~~-~----~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 267 ---NLKIDWKPSSYLYKKESFWCKGGEKS-V----SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred ---CcEEEECHHHhccccCCceEEEEEec-C----CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 48999999999987655555555443 2 357999999999999999999999999999994
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.7e-54 Score=414.72 Aligned_cols=298 Identities=19% Similarity=0.364 Sum_probs=241.6
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeEe
Q 014185 68 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEI 147 (429)
Q Consensus 68 y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~~ 147 (429)
|+++|+||||+|+++|+|||||+++||+|. .|..+.+..++.|+|++| +|++. ..+.|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~~~~~y~~~~S---------------sT~~~----~~~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACTKHNRFQPSES---------------STYVS----NGEAFSI 60 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccCccceECCCCC---------------ccccc----CCcEEEE
Confidence 789999999999999999999999999998 897433347789999999 36553 6789999
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCCC------cHHHHHhhcCCc-
Q 014185 148 EYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLREYGLI- 220 (429)
Q Consensus 148 ~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~~l~~~g~i- 220 (429)
.|++| ++.|.+++|+|+| ++..++++.||++...... .+.....+||||||++.. +++++|++||.|
T Consensus 61 ~Yg~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 61 QYGTG-SLTGIIGIDQVTV----EGITVQNQQFAESVSEPGS-TFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EeCCc-EEEEEeeecEEEE----CCEEEcCEEEEEeeccCcc-cccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 99999 7999999999999 8888999999998765322 122356899999998653 579999999999
Q ss_pred cceEEEEeCCC----CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEecc-CCCcEEEecCCcce
Q 014185 221 RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIFDSGASYA 293 (429)
Q Consensus 221 ~~~Fsl~l~~~----~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-~~~~aiiDSGt~~~ 293 (429)
+++||+||.++ ..|.|+|| |++++.|++.|+|+... .+|.|.+++|+|+++.+.. ....++|||||+++
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~----~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~ 210 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ----GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLI 210 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc----eEEEEEeeEEEEecceEecCCCCEEEECCCcchh
Confidence 89999999853 47999999 77889999999999865 8999999999999987643 34689999999999
Q ss_pred eecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEe--C
Q 014185 294 YFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS--G 371 (429)
Q Consensus 294 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~--~ 371 (429)
++|++++++|.+.+++... .. +|..+|.. .+.+|+|+|+|++ +.++|+|++|++.. .
T Consensus 211 ~lP~~~~~~l~~~~~~~~~--------~~-----~~~~~C~~----~~~~p~i~f~f~g----~~~~l~~~~y~~~~~~~ 269 (316)
T cd05486 211 TGPSGDIKQLQNYIGATAT--------DG-----EYGVDCST----LSLMPSVTFTING----IPYSLSPQAYTLEDQSD 269 (316)
T ss_pred hcCHHHHHHHHHHhCCccc--------CC-----cEEEeccc----cccCCCEEEEECC----EEEEeCHHHeEEecccC
Confidence 9999999999887754211 01 12223322 1358999999965 89999999999864 2
Q ss_pred CCcEEEEEEcCCC--CCCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 372 RKNVCLGILNGSE--AEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 372 ~~~~C~~~~~~~~--~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
++..|++.+...+ ....+.||||++|||++|+|||.+++|||||+
T Consensus 270 ~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 270 GGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 3468976544322 11245799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.3e-54 Score=413.69 Aligned_cols=304 Identities=19% Similarity=0.328 Sum_probs=243.8
Q ss_pred CCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCC--CCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCC
Q 014185 63 YPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC--TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPN 140 (429)
Q Consensus 63 ~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C--~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~ 140 (429)
+.+.+|+++|+||||+|++.|+|||||+++||+|. +|..| .+..++.|+|++| +|++.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~~~~~y~~~~S---------------sT~~~---- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACWLHHKYNSSKS---------------STYVK---- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCccccCcCcCCcccC---------------cceee----
Confidence 34779999999999999999999999999999998 88632 2236789999999 36553
Q ss_pred CCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCC------CcHHHHH
Q 014185 141 DQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQL 214 (429)
Q Consensus 141 ~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~~l 214 (429)
.++.|.+.|++| ++.|.+++|+|+| |+..++++.||+++...+. .+.....+||||||++. .+++++|
T Consensus 62 ~~~~~~i~Yg~G-~~~G~~~~D~v~~----g~~~~~~~~Fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 62 NGTEFAIQYGSG-SLSGYLSQDTVSI----GGLQVEGQLFGEAVKQPGI-TFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred CCcEEEEEECCc-EEEEEEeeeEEEE----CCEEEcCEEEEEEeeccCC-cccceeeeEEEecCCccccccCCCCHHHHH
Confidence 567999999999 7899999999999 8888999999999876332 22235689999999854 4688999
Q ss_pred hhcCCc-cceEEEEeCCC----CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEec-cCCCcEEE
Q 014185 215 REYGLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCG-LKDLTLIF 286 (429)
Q Consensus 215 ~~~g~i-~~~Fsl~l~~~----~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~-~~~~~aii 286 (429)
++||.| +++||+||.++ ..|.|+|| |++++.|++.|+|+... .+|.|++++|+|+++... .....++|
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~~~~aii 211 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK----AYWQIHMDQVDVGSGLTLCKGGCEAIV 211 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc----eEEEEEeeEEEECCeeeecCCCCEEEE
Confidence 999999 99999999753 36999999 77788999999999764 799999999999887433 23568999
Q ss_pred ecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeE
Q 014185 287 DSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAY 366 (429)
Q Consensus 287 DSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y 366 (429)
||||+++++|++++++|.+++++... . .......|.. ...+|+|+|+|++ ..++|+|++|
T Consensus 212 DSGTt~~~~p~~~~~~l~~~~~~~~~------~-~~~~~~~C~~---------~~~~P~i~f~fgg----~~~~l~~~~y 271 (325)
T cd05490 212 DTGTSLITGPVEEVRALQKAIGAVPL------I-QGEYMIDCEK---------IPTLPVISFSLGG----KVYPLTGEDY 271 (325)
T ss_pred CCCCccccCCHHHHHHHHHHhCCccc------c-CCCEEecccc---------cccCCCEEEEECC----EEEEEChHHe
Confidence 99999999999999999998854211 1 1111122432 1358999999965 8999999999
Q ss_pred EEEeCC--CcEEEEEEcCCCC--CCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 367 LVISGR--KNVCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 367 ~~~~~~--~~~C~~~~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
+++... ...|++.+...+. .....||||++|||++|+|||++++|||||+
T Consensus 272 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 272 ILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 986532 3579765443221 1245899999999999999999999999995
No 8
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.2e-53 Score=406.06 Aligned_cols=289 Identities=30% Similarity=0.533 Sum_probs=236.6
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeE
Q 014185 67 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 146 (429)
Q Consensus 67 ~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~ 146 (429)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c------------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC------------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC------------------------------------------Ceee
Confidence 4999999999999999999999999999876 43 2789
Q ss_pred eEeCCCCeEEEEEEEEEEEEeecCCcc-cccceEEeeeeecCCCCCCCCCCCceEEecCCCCCcHHHHHhhcCCccceEE
Q 014185 147 IEYGDGGSSIGALVTDLFPLRFSNGSV-FNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVIG 225 (429)
Q Consensus 147 ~~Y~~gs~~~G~~~~D~v~l~~~~g~~-~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~Fs 225 (429)
+.|++|+.+.|.+++|+|+| ++. .++++.|||+...... + ...+||||||++..+++.|+..+ .+++||
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~i----g~~~~~~~~~Fg~~~~~~~~--~--~~~~GilGLg~~~~s~~~ql~~~--~~~~FS 107 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTL----GSSDVVPGFAFGCGHDNEGL--F--GGAAGLLGLGRGKLSLPSQTASS--YGGVFS 107 (299)
T ss_pred eEeCCCceEEEEEEEEEEEe----CCCCccCCEEEECCccCCCc--c--CCCCEEEECCCCcchHHHHhhHh--hcCceE
Confidence 99999977899999999999 776 7899999999877432 2 36899999999999999998765 468999
Q ss_pred EEeCC---CCceeEEeCCCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEecc-----CCCcEEEecCCcceeecH
Q 014185 226 HCIGQ---NGRGVLFLGDGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-----KDLTLIFDSGASYAYFTS 297 (429)
Q Consensus 226 l~l~~---~~~G~l~~Gd~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-----~~~~aiiDSGt~~~~lp~ 297 (429)
+||.+ ...|+|+||..+...|+++|+|+...+....+|.|++++|+|+++.+.. ....++|||||++++||+
T Consensus 108 ~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 108 YCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred EEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 99985 4589999993222289999999987643347899999999999998764 246899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEe-CCCcEE
Q 014185 298 RVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS-GRKNVC 376 (429)
Q Consensus 298 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~-~~~~~C 376 (429)
++|++|.+++.+..... ........++.||..++.. ...+|+|+|+|++ +.+++|++++|+++. ..+..|
T Consensus 188 ~~~~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~~C 258 (299)
T cd05472 188 SAYAALRDAFRAAMAAY--PRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQVC 258 (299)
T ss_pred HHHHHHHHHHHHHhccC--CCCCCCCCCCccCcCCCCc----CCccCCEEEEECC---CCEEEeCcccEEEEecCCCCEE
Confidence 99999999998865411 1111223344688754322 2358999999996 489999999999843 446789
Q ss_pred EEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecCCC
Q 014185 377 LGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 419 (429)
Q Consensus 377 ~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c 419 (429)
+++..... ....||||+.|||++|+|||++++|||||+++|
T Consensus 259 ~~~~~~~~--~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 259 LAFAGTSD--DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEeCCCC--CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 98876532 235799999999999999999999999999999
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.3e-53 Score=409.18 Aligned_cols=301 Identities=19% Similarity=0.367 Sum_probs=246.2
Q ss_pred CceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCe
Q 014185 65 LGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCD 144 (429)
Q Consensus 65 ~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~ 144 (429)
+..|+++|.||||||++.|+|||||+++||+|. .|..+.+..++.|+|++| +|++. ..|.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~S---------------sT~~~----~~~~ 60 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQS---------------STYST----NGET 60 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccC---------------CCceE----CCcE
Confidence 357999999999999999999999999999998 897544447889999999 36653 6789
Q ss_pred eEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCC------CCcHHHHHhhcC
Q 014185 145 YEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRG------RISIVSQLREYG 218 (429)
Q Consensus 145 ~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~------~~s~~~~l~~~g 218 (429)
|++.|++| ++.|.+++|+|+| |+..++++.|||++...+. .+.....+||||||++ ..+++++|+++|
T Consensus 61 ~~~~Yg~G-s~~G~~~~D~i~~----g~~~i~~~~Fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 61 FSLQYGSG-SLTGIFGYDTVTV----QGIIITNQEFGLSETEPGT-NFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred EEEEECCc-EEEEEEEeeEEEE----CCEEEcCEEEEEEEecccc-cccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 99999999 6899999999999 8889999999999976332 1222467999999984 367999999999
Q ss_pred Cc-cceEEEEeCCC---CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEecc--CCCcEEEecCC
Q 014185 219 LI-RNVIGHCIGQN---GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLTLIFDSGA 290 (429)
Q Consensus 219 ~i-~~~Fsl~l~~~---~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~--~~~~aiiDSGt 290 (429)
.| +++||+||.+. ..|.|+|| |++++.|++.|+|+... .+|.|.+++|+|+++.+.. .+..++|||||
T Consensus 135 ~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGt 210 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE----TYWQIGIQGFQINGQATGWCSQGCQAIVDTGT 210 (318)
T ss_pred CcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc----eEEEEEeeEEEECCEEecccCCCceeeECCCC
Confidence 99 99999999854 46999999 77889999999999765 7999999999999987643 34679999999
Q ss_pred cceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEe
Q 014185 291 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS 370 (429)
Q Consensus 291 ~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~ 370 (429)
++++||++++++|++.+++.... . .+|..+|... ..+|+|+|+|++ +++.|++++|+...
T Consensus 211 t~~~lP~~~~~~l~~~~~~~~~~--------~----~~~~~~C~~~----~~~p~l~~~f~g----~~~~v~~~~y~~~~ 270 (318)
T cd05477 211 SLLTAPQQVMSTLMQSIGAQQDQ--------Y----GQYVVNCNNI----QNLPTLTFTING----VSFPLPPSAYILQN 270 (318)
T ss_pred ccEECCHHHHHHHHHHhCCcccc--------C----CCEEEeCCcc----ccCCcEEEEECC----EEEEECHHHeEecC
Confidence 99999999999999988654321 0 1333334321 347999999966 89999999999864
Q ss_pred CCCcEEE-EEEcCCCC--CCCCceeEcccceeceEEEEeCCCCEEEEecC
Q 014185 371 GRKNVCL-GILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 417 (429)
Q Consensus 371 ~~~~~C~-~~~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 417 (429)
+..|+ ++...... .....||||++|||++|+|||++++|||||++
T Consensus 271 --~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 --NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred --CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 55796 55432111 11247999999999999999999999999985
No 10
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-53 Score=417.62 Aligned_cols=337 Identities=31% Similarity=0.613 Sum_probs=276.3
Q ss_pred eeccCCCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCC-CCCCCCCCCCcCCCC----ccCCCcccccCCCCC
Q 014185 57 RALGSIYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCT-GCTKPPEKQYKPHKN----IVPCSNPRCAALHWP 131 (429)
Q Consensus 57 p~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~-~C~~~~~~~y~~~~S----~~~C~~~~C~~~~~~ 131 (429)
+.....+.++.|+++|.||||||+|.|++||||+++||+|. +|. .|..+.++.|+|++| .+.|.++.|......
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~ 114 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS 114 (398)
T ss_pred ccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCccccccccC
Confidence 33444556789999999999999999999999999999998 998 798665666999999 689999999986532
Q ss_pred CCCCCCCCCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCc---ccccceEEeeeeecCCCCCCCCCCCceEEecCCCCC
Q 014185 132 NPPRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGS---VFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI 208 (429)
Q Consensus 132 ~t~~~~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~---~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~ 208 (429)
|.. ++.|.|.+.|++|+.++|.+++|+|++ ++ ..++++.|||+....+.+... ...+||||||++..
T Consensus 115 ----~~~-~~~C~y~i~Ygd~~~~~G~l~~Dtv~~----~~~~~~~~~~~~FGc~~~~~g~~~~~-~~~dGIlGLg~~~~ 184 (398)
T KOG1339|consen 115 ----CSP-NSSCPYSIQYGDGSSTSGYLATDTVTF----GGTTSLPVPNQTFGCGTNNPGSFGLF-AAFDGILGLGRGSL 184 (398)
T ss_pred ----ccc-CCcCceEEEeCCCCceeEEEEEEEEEE----ccccccccccEEEEeeecCccccccc-cccceEeecCCCCc
Confidence 333 389999999999779999999999999 54 777889999999985432222 56899999999999
Q ss_pred cHHHHHhhcCCccceEEEEeCCC-----CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEE-----
Q 014185 209 SIVSQLREYGLIRNVIGHCIGQN-----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKS----- 276 (429)
Q Consensus 209 s~~~~l~~~g~i~~~Fsl~l~~~-----~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~----- 276 (429)
++..|+...+...++||+||.+. ..|.|+|| |..++.+.+.|+|+..... .+|.|.+.+|+|+++.
T Consensus 185 S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~~ 262 (398)
T KOG1339|consen 185 SVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKRPIGSS 262 (398)
T ss_pred cceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCccCCCcc
Confidence 99999999877766999999854 37999999 5677888999999999842 4999999999999743
Q ss_pred -eccCCCcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCC
Q 014185 277 -CGLKDLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRN 355 (429)
Q Consensus 277 -~~~~~~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~ 355 (429)
...+...+|+||||++++||+++|++|.+++.+... . .-........|+...... ..+|.|+|+|++
T Consensus 263 ~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~-----~~~P~i~~~f~~--- 330 (398)
T KOG1339|consen 263 LFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSG-----VKLPDITFHFGG--- 330 (398)
T ss_pred eEecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCc-----ccCCcEEEEECC---
Confidence 222247899999999999999999999999998641 0 001223344687653222 358999999997
Q ss_pred ceEEEeCCCeEEEEeCCCcE-EEEEEcCCCCCCCCceeEcccceeceEEEEeCC-CCEEEEec--CCCC
Q 014185 356 SVRLVVPPEAYLVISGRKNV-CLGILNGSEAEVGENNIIGEIFMQDKMVIYDNE-KQRIGWKP--EDCN 420 (429)
Q Consensus 356 g~~~~l~~~~y~~~~~~~~~-C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~-~~~iGfa~--~~c~ 420 (429)
|+.+.+++++|+++..++.. |++++...+.. ..||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 331 g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~--~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 331 GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG--PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CcEEEeCccceEEEECCCCCceeeEEecCCCC--ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 59999999999998766544 99988776321 58999999999999999999 99999999 6665
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.3e-53 Score=409.10 Aligned_cols=302 Identities=19% Similarity=0.340 Sum_probs=247.1
Q ss_pred CCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCC
Q 014185 63 YPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQ 142 (429)
Q Consensus 63 ~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~ 142 (429)
+.+..|+++|+||||+|++.|+|||||+++||+|. +|..+.+..++.|++++| +|+.. +.
T Consensus 6 ~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~S---------------st~~~----~~ 65 (320)
T cd05488 6 YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSAS---------------STYKA----NG 65 (320)
T ss_pred cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCC---------------cceee----CC
Confidence 35778999999999999999999999999999999 897544446789999998 35543 67
Q ss_pred CeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCCC------cHHHHHhh
Q 014185 143 CDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQLRE 216 (429)
Q Consensus 143 ~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~~l~~ 216 (429)
|.+.+.|++| ++.|.+++|+++| ++..++++.|||++...+ ..+.....+||||||++.. +.+.+|++
T Consensus 66 ~~~~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~a~~~~g-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 139 (320)
T cd05488 66 TEFKIQYGSG-SLEGFVSQDTLSI----GDLTIKKQDFAEATSEPG-LAFAFGKFDGILGLAYDTISVNKIVPPFYNMIN 139 (320)
T ss_pred CEEEEEECCc-eEEEEEEEeEEEE----CCEEECCEEEEEEecCCC-cceeeeeeceEEecCCccccccCCCCHHHHHHh
Confidence 8999999999 6899999999999 888899999999986532 2222356799999999653 45778999
Q ss_pred cCCc-cceEEEEeCCC--CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEeccCCCcEEEecCCc
Q 014185 217 YGLI-RNVIGHCIGQN--GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIFDSGAS 291 (429)
Q Consensus 217 ~g~i-~~~Fsl~l~~~--~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGt~ 291 (429)
||.| +++||+||.+. ..|.|+|| |++++.|+++|+|+... .+|.|.+++|+|+++.+...+..++|||||+
T Consensus 140 qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt 215 (320)
T cd05488 140 QGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK----AYWEVELEKIGLGDEELELENTGAAIDTGTS 215 (320)
T ss_pred cCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC----cEEEEEeCeEEECCEEeccCCCeEEEcCCcc
Confidence 9999 99999999853 57999999 66788999999999864 7999999999999998877778999999999
Q ss_pred ceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEeC
Q 014185 292 YAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISG 371 (429)
Q Consensus 292 ~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~~ 371 (429)
+++||++++++|.+++++... . ..+|..+|... ..+|+|+|+|++ .++.|+|++|+++.
T Consensus 216 ~~~lp~~~~~~l~~~~~~~~~--------~----~~~~~~~C~~~----~~~P~i~f~f~g----~~~~i~~~~y~~~~- 274 (320)
T cd05488 216 LIALPSDLAEMLNAEIGAKKS--------W----NGQYTVDCSKV----DSLPDLTFNFDG----YNFTLGPFDYTLEV- 274 (320)
T ss_pred cccCCHHHHHHHHHHhCCccc--------c----CCcEEeecccc----ccCCCEEEEECC----EEEEECHHHheecC-
Confidence 999999999999988854321 0 11233333221 358999999976 89999999999853
Q ss_pred CCcEEEEEEcCCCC--CCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 372 RKNVCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 372 ~~~~C~~~~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
+..|++.+...+. ...+.||||++|||++|+|||++++|||||+
T Consensus 275 -~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 -SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred -CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 3469876654321 1234799999999999999999999999996
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.9e-53 Score=405.95 Aligned_cols=291 Identities=23% Similarity=0.391 Sum_probs=239.0
Q ss_pred CCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCC---CCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCC
Q 014185 62 IYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCT---GCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKH 138 (429)
Q Consensus 62 ~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~---~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~ 138 (429)
.+.+..|+++|+||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++| +|++.
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~S---------------sT~~~-- 64 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKS---------------STYKK-- 64 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccC---------------CCccc--
Confidence 445789999999999999999999999999999998 885 576 6789999999 46665
Q ss_pred CCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCC------CcHHH
Q 014185 139 PNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVS 212 (429)
Q Consensus 139 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ 212 (429)
....+.+.|++| .+.|.+++|+|+| |+..++++.||+++.... ..+.....+||||||++. .+++.
T Consensus 65 --~~~~~~i~Yg~G-~~~G~~~~D~v~i----g~~~v~~~~f~~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 65 --NGTSASIQYGTG-SISGFFSQDSVTV----GDLVVKNQVFIEATKEPG-LTFLLAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred --CCCEEEEEcCCc-eEEEEEEeeEEEE----CCEEECCEEEEEEEecCC-ccccccccceeccccccchhhcCCCCHHH
Confidence 456899999999 7899999999999 888899999999987532 223335789999999854 35788
Q ss_pred HHhhcCCc-cceEEEEeCCC----CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEecc--CCCc
Q 014185 213 QLREYGLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL--KDLT 283 (429)
Q Consensus 213 ~l~~~g~i-~~~Fsl~l~~~----~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~--~~~~ 283 (429)
+|++||+| +++||+||.+. ..|.|+|| |++++.|+++|+|+... .+|.|.+++|+|+++.+.. ....
T Consensus 137 ~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~~~~ 212 (317)
T cd06098 137 NMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK----GYWQFEMGDVLIGGKSTGFCAGGCA 212 (317)
T ss_pred HHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC----cEEEEEeCeEEECCEEeeecCCCcE
Confidence 99999999 89999999743 47999999 78889999999999764 7999999999999987643 3467
Q ss_pred EEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCC
Q 014185 284 LIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPP 363 (429)
Q Consensus 284 aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~ 363 (429)
++|||||+++++|++++++|. +..+ |+.. ..+|+|+|+|++ ..++|+|
T Consensus 213 aivDTGTs~~~lP~~~~~~i~----------~~~~---------C~~~---------~~~P~i~f~f~g----~~~~l~~ 260 (317)
T cd06098 213 AIADSGTSLLAGPTTIVTQIN----------SAVD---------CNSL---------SSMPNVSFTIGG----KTFELTP 260 (317)
T ss_pred EEEecCCcceeCCHHHHHhhh----------ccCC---------cccc---------ccCCcEEEEECC----EEEEECh
Confidence 999999999999999877664 1223 4321 247899999965 8999999
Q ss_pred CeEEEEeCC--CcEEEEEEcCCCC--CCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 364 EAYLVISGR--KNVCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 364 ~~y~~~~~~--~~~C~~~~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
++|+++..+ ...|++.+...+. ..+..||||++|||++|+|||++++|||||+
T Consensus 261 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 261 EQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred HHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999986543 3579765432221 1235799999999999999999999999995
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.9e-53 Score=409.02 Aligned_cols=303 Identities=16% Similarity=0.299 Sum_probs=245.3
Q ss_pred CCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCC--CCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCC
Q 014185 63 YPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC--TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPN 140 (429)
Q Consensus 63 ~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C--~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~ 140 (429)
+.+..|+++|+||||+|+++|+|||||+++||+|. .|..| .+..++.|+|++| +|++.
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~S---------------sT~~~---- 63 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDS---------------STYKE---- 63 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCC---------------eeeeE----
Confidence 34778999999999999999999999999999987 78653 2347789999999 46665
Q ss_pred CCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCC------CcHHHHH
Q 014185 141 DQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQL 214 (429)
Q Consensus 141 ~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~~l 214 (429)
..|.|++.|++| ++.|.+++|+|+| ++..+ .+.||++..... ..+.....+||||||++. .+++++|
T Consensus 64 ~~~~~~~~Yg~g-~~~G~~~~D~v~~----g~~~~-~~~fg~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 136 (326)
T cd05487 64 NGTEFTIHYASG-TVKGFLSQDIVTV----GGIPV-TQMFGEVTALPA-IPFMLAKFDGVLGMGYPKQAIGGVTPVFDNI 136 (326)
T ss_pred CCEEEEEEeCCc-eEEEEEeeeEEEE----CCEEe-eEEEEEEEeccC-CccceeecceEEecCChhhcccCCCCHHHHH
Confidence 678999999999 6999999999999 77766 478999987522 122235689999999854 4689999
Q ss_pred hhcCCc-cceEEEEeCCC----CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEecc-CCCcEEE
Q 014185 215 REYGLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL-KDLTLIF 286 (429)
Q Consensus 215 ~~~g~i-~~~Fsl~l~~~----~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~-~~~~aii 286 (429)
++||.| +++||+||.++ ..|.|+|| |++++.|+++|+|+... .+|.|.+++++++++.+.. .+..++|
T Consensus 137 ~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~~~~aii 212 (326)
T cd05487 137 MSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT----GFWQIQMKGVSVGSSTLLCEDGCTAVV 212 (326)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC----ceEEEEecEEEECCEEEecCCCCEEEE
Confidence 999999 99999999853 47999999 77889999999999764 7999999999999988754 3468999
Q ss_pred ecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeE
Q 014185 287 DSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAY 366 (429)
Q Consensus 287 DSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y 366 (429)
||||++++||++++++|++++++... .. +|..+|.. ...+|+|+|+|++ ..++|++++|
T Consensus 213 DSGts~~~lP~~~~~~l~~~~~~~~~--------~~-----~y~~~C~~----~~~~P~i~f~fgg----~~~~v~~~~y 271 (326)
T cd05487 213 DTGASFISGPTSSISKLMEALGAKER--------LG-----DYVVKCNE----VPTLPDISFHLGG----KEYTLSSSDY 271 (326)
T ss_pred CCCccchhCcHHHHHHHHHHhCCccc--------CC-----CEEEeccc----cCCCCCEEEEECC----EEEEeCHHHh
Confidence 99999999999999999999864321 11 22223322 1358999999965 8999999999
Q ss_pred EEEeCC--CcEEEEEEcCCCC--CCCCceeEcccceeceEEEEeCCCCEEEEecC
Q 014185 367 LVISGR--KNVCLGILNGSEA--EVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 417 (429)
Q Consensus 367 ~~~~~~--~~~C~~~~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 417 (429)
+++..+ +..|+..+...+. +.++.||||++|||++|+|||++++|||||++
T Consensus 272 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 272 VLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 987543 4679755543221 12358999999999999999999999999985
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.6e-53 Score=415.77 Aligned_cols=309 Identities=18% Similarity=0.254 Sum_probs=244.9
Q ss_pred eEEeeccCCCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCC
Q 014185 54 VFLRALGSIYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNP 133 (429)
Q Consensus 54 ~~~p~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t 133 (429)
..+|+. .+.+.+|+++|+||||||++.|+|||||+++||+|. +|..|.++.++.|||++| +|
T Consensus 128 ~~v~L~--n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~S---------------sT 189 (453)
T PTZ00147 128 DNVELK--DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKS---------------KT 189 (453)
T ss_pred Ceeecc--ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccC---------------cc
Confidence 445554 445779999999999999999999999999999998 898666668899999999 46
Q ss_pred CCCCCCCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCC-CCCCCCCCceEEecCCCC-----
Q 014185 134 PRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNP-GPLSPPDTAGVLGLGRGR----- 207 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~-~~~~~~~~~GIlGLg~~~----- 207 (429)
+++ ..+.+.+.|++| ++.|.+++|+|+| |+.+++ ..|+++....+. ..+.....|||||||++.
T Consensus 190 ~~~----~~~~f~i~Yg~G-svsG~~~~DtVti----G~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~ 259 (453)
T PTZ00147 190 YEK----DGTKVEMNYVSG-TVSGFFSKDLVTI----GNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGS 259 (453)
T ss_pred eEE----CCCEEEEEeCCC-CEEEEEEEEEEEE----CCEEEE-EEEEEEEeccCcccccccccccceecccCCcccccc
Confidence 665 567999999999 7999999999999 888777 578888765321 112234689999999965
Q ss_pred -CcHHHHHhhcCCc-cceEEEEeCC--CCceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEeccCC
Q 014185 208 -ISIVSQLREYGLI-RNVIGHCIGQ--NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKD 281 (429)
Q Consensus 208 -~s~~~~l~~~g~i-~~~Fsl~l~~--~~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 281 (429)
.+++.+|++||.| +++||+||++ ...|.|+|| |++++.|++.|+|+... .+|.|.++ +.+++.. ...
T Consensus 260 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~----~~W~V~l~-~~vg~~~--~~~ 332 (453)
T PTZ00147 260 VDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD----LYWQVDLD-VHFGNVS--SEK 332 (453)
T ss_pred CCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC----ceEEEEEE-EEECCEe--cCc
Confidence 3578899999999 9999999985 357999999 77889999999999754 79999998 5777643 346
Q ss_pred CcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEe
Q 014185 282 LTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVV 361 (429)
Q Consensus 282 ~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l 361 (429)
..++|||||+++++|+++++++.+++.+... .. .......|+. ..+|+|+|+|++ ..++|
T Consensus 333 ~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~~--~~~y~~~C~~----------~~lP~~~f~f~g----~~~~L 392 (453)
T PTZ00147 333 ANVIVDSGTSVITVPTEFLNKFVESLDVFKV----PF--LPLYVTTCNN----------TKLPTLEFRSPN----KVYTL 392 (453)
T ss_pred eeEEECCCCchhcCCHHHHHHHHHHhCCeec----CC--CCeEEEeCCC----------CCCCeEEEEECC----EEEEE
Confidence 7899999999999999999999998854211 00 0111123542 247999999976 89999
Q ss_pred CCCeEEEEeC--CCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecCC
Q 014185 362 PPEAYLVISG--RKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPED 418 (429)
Q Consensus 362 ~~~~y~~~~~--~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~ 418 (429)
+|++|+.+.. ....|+..+...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 393 ~p~~yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 393 EPEYYLQPIEDIGSALCMLNIIPIDL-EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CHHHheeccccCCCcEEEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999997532 23579754433221 23579999999999999999999999999987
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.2e-53 Score=406.08 Aligned_cols=305 Identities=20% Similarity=0.326 Sum_probs=246.6
Q ss_pred CCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCC--CCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCC
Q 014185 62 IYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCT--KPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHP 139 (429)
Q Consensus 62 ~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~--~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~ 139 (429)
.+.+..|+++|+||||+|++.|++||||+++||+|. +|..|. +..++.|+|++| +|++.
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~S---------------st~~~--- 66 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACLLHNKYDSTKS---------------STYKK--- 66 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCccccCCCeECCcCC---------------CCeEE---
Confidence 345789999999999999999999999999999998 886321 235788999999 35554
Q ss_pred CCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCCC------cHHHH
Q 014185 140 NDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI------SIVSQ 213 (429)
Q Consensus 140 ~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~~ 213 (429)
..|.|.+.|++| ++.|.+++|+++| ++..++++.||++....+ ..+.....+||||||++.. +++.+
T Consensus 67 -~~~~~~i~Y~~g-~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~-~~~~~~~~~GilGLg~~~~s~~~~~p~~~~ 139 (329)
T cd05485 67 -NGTEFAIQYGSG-SLSGFLSTDTVSV----GGVSVKGQTFAEAINEPG-LTFVAAKFDGILGMGYSSISVDGVVPVFYN 139 (329)
T ss_pred -CCeEEEEEECCc-eEEEEEecCcEEE----CCEEECCEEEEEEEecCC-ccccccccceEEEcCCccccccCCCCHHHH
Confidence 578999999999 6899999999999 888889999999987532 2222356899999999654 46899
Q ss_pred HhhcCCc-cceEEEEeCCC----CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEeccCCCcEEE
Q 014185 214 LREYGLI-RNVIGHCIGQN----GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKDLTLIF 286 (429)
Q Consensus 214 l~~~g~i-~~~Fsl~l~~~----~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~aii 286 (429)
|++||+| +++||+||.+. ..|.|+|| |++++.|+++|+|+... .+|.|.++++.++++.+...+..++|
T Consensus 140 l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~~~~i~v~~~~~~~~~~~~ii 215 (329)
T cd05485 140 MVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK----GYWQFKMDSVSVGEGEFCSGGCQAIA 215 (329)
T ss_pred HHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc----eEEEEEeeEEEECCeeecCCCcEEEE
Confidence 9999999 99999999853 46999999 67788999999999764 89999999999999887666678999
Q ss_pred ecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeE
Q 014185 287 DSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAY 366 (429)
Q Consensus 287 DSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y 366 (429)
||||++++||++++++|.+++++... .. .||..+|... ..+|+|+|+|++ +.+.|++++|
T Consensus 216 DSGtt~~~lP~~~~~~l~~~~~~~~~-------~~-----~~~~~~C~~~----~~~p~i~f~fgg----~~~~i~~~~y 275 (329)
T cd05485 216 DTGTSLIAGPVDEIEKLNNAIGAKPI-------IG-----GEYMVNCSAI----PSLPDITFVLGG----KSFSLTGKDY 275 (329)
T ss_pred ccCCcceeCCHHHHHHHHHHhCCccc-------cC-----CcEEEecccc----ccCCcEEEEECC----EEeEEChHHe
Confidence 99999999999999999988864211 01 1333344321 347999999965 8999999999
Q ss_pred EEEeCC--CcEEEEEEcCCC--CCCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 367 LVISGR--KNVCLGILNGSE--AEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 367 ~~~~~~--~~~C~~~~~~~~--~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
+++..+ ..+|+..+...+ ....+.||||++|||++|+|||++++|||||+
T Consensus 276 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 276 VLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 987543 467975443221 11245799999999999999999999999985
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.3e-52 Score=409.45 Aligned_cols=309 Identities=19% Similarity=0.275 Sum_probs=242.2
Q ss_pred eEEeeccCCCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCC
Q 014185 54 VFLRALGSIYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNP 133 (429)
Q Consensus 54 ~~~p~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t 133 (429)
-.+|+. .+.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+.++.++.|+|++| +|
T Consensus 127 ~~~~l~--d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~S---------------sT 188 (450)
T PTZ00013 127 DVIELD--DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKS---------------KS 188 (450)
T ss_pred Cceeee--ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccC---------------cc
Confidence 344554 345778999999999999999999999999999998 897544447889999998 46
Q ss_pred CCCCCCCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCC-CCCCCCCCceEEecCCCC-----
Q 014185 134 PRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNP-GPLSPPDTAGVLGLGRGR----- 207 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~-~~~~~~~~~GIlGLg~~~----- 207 (429)
++. .++.+.+.|++| ++.|.+++|+|+| |+.+++ ..|+++...... ..+.....+||||||++.
T Consensus 189 ~~~----~~~~~~i~YG~G-sv~G~~~~Dtv~i----G~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 189 YEK----DGTKVDITYGSG-TVKGFFSKDLVTL----GHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred ccc----CCcEEEEEECCc-eEEEEEEEEEEEE----CCEEEc-cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 654 567999999999 6999999999999 887776 578887654221 112224689999999964
Q ss_pred -CcHHHHHhhcCCc-cceEEEEeCCC--CceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEeccCC
Q 014185 208 -ISIVSQLREYGLI-RNVIGHCIGQN--GRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLKD 281 (429)
Q Consensus 208 -~s~~~~l~~~g~i-~~~Fsl~l~~~--~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~~ 281 (429)
.+++.+|++||.| +++||+||++. ..|.|+|| |++++.|+++|+|+... .+|.|.++ +.++.... ..
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~----~yW~I~l~-v~~G~~~~--~~ 331 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD----LYWQIDLD-VHFGKQTM--QK 331 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC----ceEEEEEE-EEECceec--cc
Confidence 3689999999999 99999999843 57999999 77889999999999754 79999998 66765432 45
Q ss_pred CcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEe
Q 014185 282 LTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVV 361 (429)
Q Consensus 282 ~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l 361 (429)
..+++||||+++++|+++++++.++++.... .. .......|+. ..+|+|+|+|++ ..++|
T Consensus 332 ~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~~--~~~y~~~C~~----------~~lP~i~F~~~g----~~~~L 391 (450)
T PTZ00013 332 ANVIVDSGTTTITAPSEFLNKFFANLNVIKV----PF--LPFYVTTCDN----------KEMPTLEFKSAN----NTYTL 391 (450)
T ss_pred cceEECCCCccccCCHHHHHHHHHHhCCeec----CC--CCeEEeecCC----------CCCCeEEEEECC----EEEEE
Confidence 6899999999999999999999988854311 00 0111123432 247999999976 89999
Q ss_pred CCCeEEEEe--CCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecCC
Q 014185 362 PPEAYLVIS--GRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPED 418 (429)
Q Consensus 362 ~~~~y~~~~--~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~ 418 (429)
+|++|+.+. .++..|+..+...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 392 ~p~~Yi~~~~~~~~~~C~~~i~~~~~-~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 392 EPEYYMNPLLDVDDTLCMITMLPVDI-DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CHHHheehhccCCCCeeEEEEEECCC-CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999998743 234679755443321 23589999999999999999999999999986
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.5e-51 Score=398.23 Aligned_cols=317 Identities=21% Similarity=0.293 Sum_probs=241.5
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeE
Q 014185 67 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 146 (429)
Q Consensus 67 ~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~ 146 (429)
.|+++|+||||+|++.|+|||||+++||+|. +|. +.++.|+|++| +|++. ..|.|+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~----~~~~~f~~~~S---------------sT~~~----~~~~~~ 58 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHP----FIHTYFHRELS---------------STYRD----LGKGVT 58 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCc----cccccCCchhC---------------cCccc----CCceEE
Confidence 6999999999999999999999999999987 662 25678999999 46664 678999
Q ss_pred eEeCCCCeEEEEEEEEEEEEeecCCcccccc--eEEeeeeecCCCCCCCCCCCceEEecCCCC--------CcHHHHHhh
Q 014185 147 IEYGDGGSSIGALVTDLFPLRFSNGSVFNVP--LTFGCGYNQHNPGPLSPPDTAGVLGLGRGR--------ISIVSQLRE 216 (429)
Q Consensus 147 ~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~--~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~--------~s~~~~l~~ 216 (429)
+.|++| ++.|.+++|+|+| ++..... +.|+++..... ........+||||||++. .+++++|.+
T Consensus 59 i~Yg~G-s~~G~~~~D~v~i----g~~~~~~~~~~~~~~~~~~~-~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~ 132 (364)
T cd05473 59 VPYTQG-SWEGELGTDLVSI----PKGPNVTFRANIAAITESEN-FFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVK 132 (364)
T ss_pred EEECcc-eEEEEEEEEEEEE----CCCCccceEEeeEEEecccc-ceecccccceeeeecccccccCCCCCCCHHHHHHh
Confidence 999999 7899999999999 5421111 23455544322 111123579999999854 468899999
Q ss_pred cCCccceEEEEeCC-----------CCceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEeccC---
Q 014185 217 YGLIRNVIGHCIGQ-----------NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK--- 280 (429)
Q Consensus 217 ~g~i~~~Fsl~l~~-----------~~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~--- 280 (429)
|+.++++||+||+. ...|.|+|| |+.++.|++.|+|+... .+|.|.+++|+|+++.+...
T Consensus 133 q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~----~~~~v~l~~i~vg~~~~~~~~~~ 208 (364)
T cd05473 133 QTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE----WYYEVIILKLEVGGQSLNLDCKE 208 (364)
T ss_pred ccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc----eeEEEEEEEEEECCEeccccccc
Confidence 99887799998842 136999999 77889999999999865 79999999999999887642
Q ss_pred --CCcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCC---CCCCceecCCCcCcccccccCccEEEEEeCCC-
Q 014185 281 --DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDD---KTLPICWRGPFKALGQVTEYFKPLALSFTNRR- 354 (429)
Q Consensus 281 --~~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~- 354 (429)
...+||||||++++||++++++|.+++.++... ..++.. .....|++... .....+|+|+|+|++..
T Consensus 209 ~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~C~~~~~----~~~~~~P~i~~~f~g~~~ 281 (364)
T cd05473 209 YNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI---EDFPDGFWLGSQLACWQKGT----TPWEIFPKISIYLRDENS 281 (364)
T ss_pred ccCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc---ccCCccccCcceeecccccC----chHhhCCcEEEEEccCCC
Confidence 236999999999999999999999999887531 111111 11134765321 11235899999998621
Q ss_pred -CceEEEeCCCeEEEEeC---CCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecCCCCCccccCc
Q 014185 355 -NSVRLVVPPEAYLVISG---RKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDCNTLLSLNH 427 (429)
Q Consensus 355 -~g~~~~l~~~~y~~~~~---~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c~~~~~~~~ 427 (429)
.+.++.|+|++|+.... .+..|+++.... ..+.||||+.|||++|+|||++++|||||+++|+.....++
T Consensus 282 ~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~---~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~~~ 355 (364)
T cd05473 282 SQSFRITILPQLYLRPVEDHGTQLDCYKFAISQ---STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGFRT 355 (364)
T ss_pred CceEEEEECHHHhhhhhccCCCcceeeEEeeec---CCCceEEeeeeEcceEEEEECCCCEEeeEecccccccCcce
Confidence 13578999999997542 245797543222 13479999999999999999999999999999998776553
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.4e-49 Score=384.54 Aligned_cols=325 Identities=22% Similarity=0.385 Sum_probs=248.7
Q ss_pred eCCCCcE-EEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCC---------CCCCCCCCCCC
Q 014185 74 VGKPPKL-FDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPN---------PPRCKHPNDQC 143 (429)
Q Consensus 74 iGtP~q~-~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~---------t~~~~~~~~~~ 143 (429)
+|||-.+ +.|++||||+++||+|. +|. ...|. .++|.++.|....++. ...|.+ +.|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~--~~C 68 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCGN--NTC 68 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCCC----ccCcCChhhccccccCCCccccCCCCCCCCC--CcC
Confidence 5888777 99999999999999887 531 11222 4899999998665331 124532 468
Q ss_pred eeEeE-eCCCCeEEEEEEEEEEEEeecCCc----ccccceEEeeeeecCCCCCCCCCCCceEEecCCCCCcHHHHHhhcC
Q 014185 144 DYEIE-YGDGGSSIGALVTDLFPLRFSNGS----VFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYG 218 (429)
Q Consensus 144 ~~~~~-Y~~gs~~~G~~~~D~v~l~~~~g~----~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g 218 (429)
.|... |++|+...|.+++|+++|...+++ .+++++.|||+......... ...+||||||+++.|++.||..++
T Consensus 69 ~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~--~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 69 TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP--PGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc--cccccccccCCCccchHHHhhhhc
Confidence 88765 778989999999999999654443 36889999999875221111 458999999999999999998876
Q ss_pred CccceEEEEeCC--CCceeEEeCC--CCCC------CCCcEEeecccCCCCCCCEEeeecEEEECCEEeccC--------
Q 014185 219 LIRNVIGHCIGQ--NGRGVLFLGD--GKVP------SSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGLK-------- 280 (429)
Q Consensus 219 ~i~~~Fsl~l~~--~~~G~l~~Gd--~~~~------~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~~-------- 280 (429)
..+++||+||.+ ...|.|+||+ ..++ .+.++|+|++.++....+|.|++++|+||++.+..+
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 568999999985 3579999994 3333 378999999976433479999999999999987642
Q ss_pred --CCcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceE
Q 014185 281 --DLTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVR 358 (429)
Q Consensus 281 --~~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~ 358 (429)
...+||||||++++||+++|++|.+++.+.+........ .....+.||.............+|+|+|+|+++ |++
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~--g~~ 303 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASALGNTRLGYAVPAIDLVLDGG--GVN 303 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCcCCcccccccceEEEEEeCC--CeE
Confidence 357999999999999999999999999987653211111 111236798753322222235699999999873 489
Q ss_pred EEeCCCeEEEEeCCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecC
Q 014185 359 LVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 417 (429)
Q Consensus 359 ~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 417 (429)
++|+|++|+++..++.+|+++...... ....||||+.|||++|+|||++++|||||+.
T Consensus 304 ~~l~~~ny~~~~~~~~~Cl~f~~~~~~-~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 304 WTIFGANSMVQVKGGVACLAFVDGGSE-PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEcCCceEEEcCCCcEEEEEeeCCCC-CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999999987777889988765421 1357999999999999999999999999974
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8e-50 Score=372.86 Aligned_cols=247 Identities=40% Similarity=0.722 Sum_probs=216.5
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeE
Q 014185 67 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 146 (429)
Q Consensus 67 ~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~ 146 (429)
+|+++|+||||+|++.|+|||||+++||+| | .|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~------~----------------------------------------~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC------C----------------------------------------SYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC------C----------------------------------------ceE
Confidence 499999999999999999999999999964 2 588
Q ss_pred eEeCCCCeEEEEEEEEEEEEeecCCcc--cccceEEeeeeecCCCCCCCCCCCceEEecCCCCCcHHHHHhhcCCccceE
Q 014185 147 IEYGDGGSSIGALVTDLFPLRFSNGSV--FNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRNVI 224 (429)
Q Consensus 147 ~~Y~~gs~~~G~~~~D~v~l~~~~g~~--~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~F 224 (429)
+.|++|+.+.|.+++|+|+| ++. .++++.|||+..... +.....+||||||++..++++||..++ ++|
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~----g~~~~~~~~~~Fg~~~~~~~---~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~F 104 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTF----GDSSVSVPNVAFGCGTDNEG---GSFGGADGILGLGRGPLSLVSQLGSTG---NKF 104 (265)
T ss_pred eEeCCCceeeeeEEEEEEEe----cCCCCccCCEEEEecccccC---CccCCCCEEEECCCCcccHHHHhhccc---Cee
Confidence 99998889999999999999 776 789999999998744 223679999999999999999999887 899
Q ss_pred EEEeCC----CCceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEEecc----------CCCcEEEec
Q 014185 225 GHCIGQ----NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKSCGL----------KDLTLIFDS 288 (429)
Q Consensus 225 sl~l~~----~~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~~~~----------~~~~aiiDS 288 (429)
|+||.+ ...|+|+|| |.+ +.+++.|+|+...+....+|.|++++|+|+++.+.+ ....++|||
T Consensus 105 s~~l~~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DT 183 (265)
T cd05476 105 SYCLVPHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDS 183 (265)
T ss_pred EEEccCCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeC
Confidence 999985 458999999 555 889999999997632347999999999999988742 357899999
Q ss_pred CCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEE
Q 014185 289 GASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLV 368 (429)
Q Consensus 289 Gt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~ 368 (429)
||++++||++++ |+|+|+|++ +.++.+++++|+.
T Consensus 184 GTs~~~lp~~~~-------------------------------------------P~i~~~f~~---~~~~~i~~~~y~~ 217 (265)
T cd05476 184 GTTLTYLPDPAY-------------------------------------------PDLTLHFDG---GADLELPPENYFV 217 (265)
T ss_pred CCcceEcCcccc-------------------------------------------CCEEEEECC---CCEEEeCcccEEE
Confidence 999999999887 367999996 4899999999999
Q ss_pred EeCCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecCCC
Q 014185 369 ISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPEDC 419 (429)
Q Consensus 369 ~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~~c 419 (429)
+..++..|++++... ..+.||||++|||++|+|||++++|||||+++|
T Consensus 218 ~~~~~~~C~~~~~~~---~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 218 DVGEGVVCLAILSSS---SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred ECCCCCEEEEEecCC---CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 766778999888753 256899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.1e-50 Score=376.45 Aligned_cols=266 Identities=20% Similarity=0.361 Sum_probs=221.6
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeEe
Q 014185 68 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEI 147 (429)
Q Consensus 68 y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~~ 147 (429)
|+++|+||||+|++.|+|||||+++||+|. .|..|.+..++.|++++| +|+++. ..+.+.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~S---------------st~~~~---~~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKS---------------STAKLL---PGATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccC---------------ccceec---CCcEEEE
Confidence 789999999999999999999999999999 899998778888999998 366542 4679999
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCC---------CcHHHHHhhcC
Q 014185 148 EYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR---------ISIVSQLREYG 218 (429)
Q Consensus 148 ~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~---------~s~~~~l~~~g 218 (429)
.|++|+.+.|.+++|+|+| ++.+++++.||+++..... .+.....+||||||++. .+++++|.+++
T Consensus 62 ~Y~~G~~~~G~~~~D~v~i----g~~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSI----GGVEVPNQAIELATAVSAS-FFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EeCCCCeEEEEEEEEEEEE----CCEEECCeEEEEEeecCcc-ccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 9999977999999999999 8888999999999886432 12235799999999864 35788999886
Q ss_pred CccceEEEEeCCCCceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCEE-eccCCCcEEEecCCcceee
Q 014185 219 LIRNVIGHCIGQNGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGKS-CGLKDLTLIFDSGASYAYF 295 (429)
Q Consensus 219 ~i~~~Fsl~l~~~~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~~-~~~~~~~aiiDSGt~~~~l 295 (429)
. +++||+||.+...|.|+|| |+.++.|+++|+|+.... .+|.|.+++|+|+++. ....+..++|||||+++++
T Consensus 137 ~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~l 212 (278)
T cd06097 137 D-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSS---GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILL 212 (278)
T ss_pred c-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCC---cEEEEEEeeEEECCcceeecCCceEEeecCCchhcC
Confidence 5 8999999997778999999 778899999999998742 7999999999999873 3345678999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEeCCCcE
Q 014185 296 TSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNV 375 (429)
Q Consensus 296 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~~~~~~ 375 (429)
|++++++|.+++.+... .. ...+|..+|+. .+|+|+|+|
T Consensus 213 P~~~~~~l~~~l~g~~~----~~------~~~~~~~~C~~------~~P~i~f~~------------------------- 251 (278)
T cd06097 213 PDAIVEAYYSQVPGAYY----DS------EYGGWVFPCDT------TLPDLSFAV------------------------- 251 (278)
T ss_pred CHHHHHHHHHhCcCCcc----cC------CCCEEEEECCC------CCCCEEEEE-------------------------
Confidence 99999999998842211 00 01244445542 168888776
Q ss_pred EEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 376 CLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 376 C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4e-48 Score=367.83 Aligned_cols=267 Identities=25% Similarity=0.457 Sum_probs=223.9
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeE
Q 014185 67 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 146 (429)
Q Consensus 67 ~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~ 146 (429)
.|+++|+||||+|++.|+|||||+++||+ .|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------eeE
Confidence 69999999999999999999999999995 478
Q ss_pred eEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCCC-----------cHHHHHh
Q 014185 147 IEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRI-----------SIVSQLR 215 (429)
Q Consensus 147 ~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~~l~ 215 (429)
+.|++|+.+.|.+++|+|++ ++..++++.|||++.. ...+||||||++.. +++++|+
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~----g~~~~~~~~fg~~~~~--------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSI----GGATVKNLQFAVANST--------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred EEeccCCcEEEEEEEEEEEE----CCeEecceEEEEEecC--------CCCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 88999779999999999999 7888899999999985 45799999999764 7999999
Q ss_pred hcCCc-cceEEEEeCC--CCceeEEeC--CCCCCCCCcEEeecccCCC--CCCCEEeeecEEEECCEEec----cCCCcE
Q 014185 216 EYGLI-RNVIGHCIGQ--NGRGVLFLG--DGKVPSSGVAWTPMLQNSA--DLKHYILGPAELLYSGKSCG----LKDLTL 284 (429)
Q Consensus 216 ~~g~i-~~~Fsl~l~~--~~~G~l~~G--d~~~~~g~l~~~p~~~~~~--~~~~w~v~l~~i~v~~~~~~----~~~~~a 284 (429)
++|.| +++||+||.+ ...|.|+|| |..++.++++|+|+..... ...+|.|.+++|+++++.+. .....+
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~ 181 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPA 181 (295)
T ss_pred HCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccE
Confidence 99999 8999999986 358999999 7778899999999997642 23789999999999988753 345789
Q ss_pred EEecCCcceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCC
Q 014185 285 IFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPE 364 (429)
Q Consensus 285 iiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~ 364 (429)
+|||||++++||++++++|.+++.+.... . .......|+. .. . |+|+|+|++ .+++||++
T Consensus 182 iiDSGt~~~~lP~~~~~~l~~~~~~~~~~-----~-~~~~~~~C~~-----~~----~-p~i~f~f~g----~~~~i~~~ 241 (295)
T cd05474 182 LLDSGTTLTYLPSDIVDAIAKQLGATYDS-----D-EGLYVVDCDA-----KD----D-GSLTFNFGG----ATISVPLS 241 (295)
T ss_pred EECCCCccEeCCHHHHHHHHHHhCCEEcC-----C-CcEEEEeCCC-----CC----C-CEEEEEECC----eEEEEEHH
Confidence 99999999999999999999999765431 0 1111223443 21 2 899999976 89999999
Q ss_pred eEEEEeC----CCcEEE-EEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecC
Q 014185 365 AYLVISG----RKNVCL-GILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 417 (429)
Q Consensus 365 ~y~~~~~----~~~~C~-~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 417 (429)
+|+++.. .+..|+ ++.+.. .+.||||++|||++|+|||.+++|||||++
T Consensus 242 ~~~~~~~~~~~~~~~C~~~i~~~~----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 242 DLVLPASTDDGGDGACYLGIQPST----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred HhEeccccCCCCCCCeEEEEEeCC----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9998764 256785 555433 268999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=5e-49 Score=377.95 Aligned_cols=300 Identities=26% Similarity=0.502 Sum_probs=245.1
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCC-CCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCee
Q 014185 67 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGC-TKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 145 (429)
Q Consensus 67 ~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C-~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~ 145 (429)
+|+++|+||||+|+++|++||||+++||++. .|..| .+.....|++.+| ++... ..+.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S---------------~t~~~----~~~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKS---------------STFSN----QGKPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGS---------------TTEEE----EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-ccccccccccccccccccc---------------ccccc----ceeee
Confidence 5999999999999999999999999999988 78776 4447889999888 23332 45679
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCC-------CCcHHHHHhhcC
Q 014185 146 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRG-------RISIVSQLREYG 218 (429)
Q Consensus 146 ~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~-------~~s~~~~l~~~g 218 (429)
.+.|++| .+.|.+++|+++| ++..+.++.||++...... .+.....+||||||++ ..+++++|+++|
T Consensus 61 ~~~y~~g-~~~G~~~~D~v~i----g~~~~~~~~f~~~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDG-SVSGNLVSDTVSI----GGLTIPNQTFGLADSYSGD-PFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTE-EEEEEEEEEEEEE----TTEEEEEEEEEEEEEEESH-HHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCc-ccccccccceEee----eeccccccceecccccccc-ccccccccccccccCCcccccccCCcceecchhhc
Confidence 9999999 5999999999999 8999999999999985221 0112578999999973 368999999999
Q ss_pred Cc-cceEEEEeCCCC--ceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCE-EeccCCCcEEEecCCcc
Q 014185 219 LI-RNVIGHCIGQNG--RGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGK-SCGLKDLTLIFDSGASY 292 (429)
Q Consensus 219 ~i-~~~Fsl~l~~~~--~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~-~~~~~~~~aiiDSGt~~ 292 (429)
.| +++||++|.+.. .|.|+|| |.+++.|+++|+|+... .+|.+.+++|.+++. ........++||||+++
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~----~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~ 210 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS----GYWSVPLDSISIGGESVFSSSGQQAILDTGTSY 210 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST----TTTEEEEEEEEETTEEEEEEEEEEEEEETTBSS
T ss_pred cccccccceeeeecccccchheeeccccccccCceeccCcccc----cccccccccccccccccccccceeeeccccccc
Confidence 99 999999998754 7999999 77889999999999944 899999999999998 44444578999999999
Q ss_pred eeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEeCC
Q 014185 293 AYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGR 372 (429)
Q Consensus 293 ~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~~~ 372 (429)
++||.+++++|++.++..... .++..+|... ..+|.|+|+|++ .+++|++++|+.+...
T Consensus 211 i~lp~~~~~~i~~~l~~~~~~-------------~~~~~~c~~~----~~~p~l~f~~~~----~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 211 IYLPRSIFDAIIKALGGSYSD-------------GVYSVPCNST----DSLPDLTFTFGG----VTFTIPPSDYIFKIED 269 (317)
T ss_dssp EEEEHHHHHHHHHHHTTEEEC-------------SEEEEETTGG----GGSEEEEEEETT----EEEEEEHHHHEEEESS
T ss_pred ccccchhhHHHHhhhcccccc-------------eeEEEecccc----cccceEEEeeCC----EEEEecchHhcccccc
Confidence 999999999999999876541 2333344322 347899999986 8999999999998765
Q ss_pred C--cEEEEEEcCCC-CCCCCceeEcccceeceEEEEeCCCCEEEEecC
Q 014185 373 K--NVCLGILNGSE-AEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 417 (429)
Q Consensus 373 ~--~~C~~~~~~~~-~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 417 (429)
. ..|+..+...+ ......++||.+|||++|+|||.|++|||||+|
T Consensus 270 ~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 4 37965554421 124578999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.8e-45 Score=347.55 Aligned_cols=266 Identities=29% Similarity=0.529 Sum_probs=221.7
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCC--CcCCCCccCCCcccccCCCCCCCCCCCCCCCCCee
Q 014185 68 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQ--YKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDY 145 (429)
Q Consensus 68 y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~--y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~ 145 (429)
|+++|.||||+|++.|++||||+++||+|. .|..|.++.... |++..| .+.. +..|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s---------------~~~~----~~~~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKS---------------STYK----DTGCTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCC---------------ceee----cCCCEE
Confidence 789999999999999999999999999999 898887655444 555554 1222 268899
Q ss_pred EeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecCCCC------CcHHHHHhhcCC
Q 014185 146 EIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGR------ISIVSQLREYGL 219 (429)
Q Consensus 146 ~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~~l~~~g~ 219 (429)
++.|++| .+.|.+++|+++| ++..++++.|||++..... ......+||||||+.. .+++++|.+++.
T Consensus 61 ~~~Y~~g-~~~g~~~~D~v~~----~~~~~~~~~fg~~~~~~~~--~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~ 133 (283)
T cd05471 61 SITYGDG-SVTGGLGTDTVTI----GGLTIPNQTFGCATSESGD--FSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGL 133 (283)
T ss_pred EEEECCC-eEEEEEEEeEEEE----CCEEEeceEEEEEeccCCc--ccccccceEeecCCcccccccCCCHHHHHHHCCC
Confidence 9999998 8999999999999 7777899999999987542 2236799999999987 799999999999
Q ss_pred c-cceEEEEeCC----CCceeEEeC--CCCCCCCCcEEeecccCCCCCCCEEeeecEEEECCE--EeccCCCcEEEecCC
Q 014185 220 I-RNVIGHCIGQ----NGRGVLFLG--DGKVPSSGVAWTPMLQNSADLKHYILGPAELLYSGK--SCGLKDLTLIFDSGA 290 (429)
Q Consensus 220 i-~~~Fsl~l~~----~~~G~l~~G--d~~~~~g~l~~~p~~~~~~~~~~w~v~l~~i~v~~~--~~~~~~~~aiiDSGt 290 (429)
| +++||+||.+ ...|.|+|| |..++.+++.|+|+.... ..+|.|.+++|.+++. ........++|||||
T Consensus 134 i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt 211 (283)
T cd05471 134 ISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNG--PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGT 211 (283)
T ss_pred CCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCC--CCEEEEEeCeEEECCceeeecCCCcEEEEecCC
Confidence 9 9999999986 378999999 666789999999999852 2899999999999987 444457899999999
Q ss_pred cceeecHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceecCCCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEe
Q 014185 291 SYAYFTSRVYQEIVSLIMRDLIGTPLKLAPDDKTLPICWRGPFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVIS 370 (429)
Q Consensus 291 ~~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~ 370 (429)
++++||++++++|++++.+.... ...|+..+|.. ...+|+|+|+|
T Consensus 212 ~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~----~~~~p~i~f~f-------------------- 256 (283)
T cd05471 212 SLIYLPSSVYDAILKALGAAVSS-----------SDGGYGVDCSP----CDTLPDITFTF-------------------- 256 (283)
T ss_pred CCEeCCHHHHHHHHHHhCCcccc-----------cCCcEEEeCcc----cCcCCCEEEEE--------------------
Confidence 99999999999999999876541 11222222211 24588999888
Q ss_pred CCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 371 GRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 371 ~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
.+|||++|||++|++||++++|||||+
T Consensus 257 -------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=1.2e-27 Score=205.93 Aligned_cols=156 Identities=40% Similarity=0.738 Sum_probs=123.1
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCC----ccCCCcccccCCCCCCCCCCCCCCCCC
Q 014185 68 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKN----IVPCSNPRCAALHWPNPPRCKHPNDQC 143 (429)
Q Consensus 68 y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S----~~~C~~~~C~~~~~~~t~~~~~~~~~~ 143 (429)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+| .++|.++.|...+.. ...|...+..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 89999999999999999999999999976 4578899888 699999999976543 22333334789
Q ss_pred eeEeEeCCCCeEEEEEEEEEEEEeecCC-cccccceEEeeeeecCCCCCCCCCCCceEEecCCCCCcHHHHHhhcCCccc
Q 014185 144 DYEIEYGDGGSSIGALVTDLFPLRFSNG-SVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLGRGRISIVSQLREYGLIRN 222 (429)
Q Consensus 144 ~~~~~Y~~gs~~~G~~~~D~v~l~~~~g-~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~ 222 (429)
.|.+.|++++.+.|.+++|++++...++ .....++.|||++...+.+ ...+||||||+.+.||+.||.++ ..+
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~----~~~~GilGLg~~~~Sl~sQl~~~--~~~ 143 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF----YGADGILGLGRGPLSLPSQLASS--SGN 143 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS----TTEEEEEE-SSSTTSHHHHHHHH----S
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC----cCCCcccccCCCcccHHHHHHHh--cCC
Confidence 9999999999999999999999976532 2567799999999985332 47999999999999999999988 678
Q ss_pred eEEEEeCC---CCceeEEeCC
Q 014185 223 VIGHCIGQ---NGRGVLFLGD 240 (429)
Q Consensus 223 ~Fsl~l~~---~~~G~l~~Gd 240 (429)
+||+||.+ +..|.|+||+
T Consensus 144 ~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 144 KFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEB-S-SSSSEEEEEECS
T ss_pred eEEEECCCCCCCCCEEEEeCc
Confidence 99999986 5789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.92 E-value=2.7e-24 Score=184.92 Aligned_cols=151 Identities=25% Similarity=0.442 Sum_probs=116.7
Q ss_pred CEEeeecEEEECCEEeccCC---------CcEEEecCCcceeecHHHHHHHHHHHHHHhcCCCCcc-CCCCCCCCceecC
Q 014185 262 HYILGPAELLYSGKSCGLKD---------LTLIFDSGASYAYFTSRVYQEIVSLIMRDLIGTPLKL-APDDKTLPICWRG 331 (429)
Q Consensus 262 ~w~v~l~~i~v~~~~~~~~~---------~~aiiDSGt~~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~C~~~ 331 (429)
+|.|+|++|+||++.+.++. ..++|||||++++||+++|++|.+++.+.+....+.+ ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999987642 5699999999999999999999999999887433222 3456778899998
Q ss_pred CCcCcccccccCccEEEEEeCCCCceEEEeCCCeEEEEeCCCcEEEEEEcCCCCCCCCceeEcccceeceEEEEeCCCCE
Q 014185 332 PFKALGQVTEYFKPLALSFTNRRNSVRLVVPPEAYLVISGRKNVCLGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQR 411 (429)
Q Consensus 332 ~~~~~~~~~~~~P~i~~~f~~~~~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ 411 (429)
+..........+|+|+|+|.+ |++++|++++|+++..++..|+++... +.+..+..|||..+|++++++||++++|
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~---ga~l~l~~~~y~~~~~~~~~Cla~~~~-~~~~~~~~viG~~~~~~~~v~fDl~~~~ 156 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEG---GADLTLPPENYFVQVSPGVFCLAFVPS-DADDDGVSVIGNFQQQNYHVVFDLENGR 156 (161)
T ss_dssp GCS-EETTEESS--EEEEETT---SEEEEE-HHHHEEEECTTEEEESEEEE-TSTTSSSEEE-HHHCCTEEEEEETTTTE
T ss_pred cccccccccccCCeEEEEEeC---CcceeeeccceeeeccCCCEEEEEEcc-CCCCCCcEEECHHHhcCcEEEEECCCCE
Confidence 653334456789999999998 699999999999998888999999987 1223578999999999999999999999
Q ss_pred EEEec
Q 014185 412 IGWKP 416 (429)
Q Consensus 412 iGfa~ 416 (429)
|||+|
T Consensus 157 igF~~ 161 (161)
T PF14541_consen 157 IGFAP 161 (161)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=2.6e-22 Score=161.25 Aligned_cols=108 Identities=31% Similarity=0.615 Sum_probs=90.9
Q ss_pred EEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCC-cCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeEeE
Q 014185 70 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQY-KPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEIE 148 (429)
Q Consensus 70 ~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y-~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~~~ 148 (429)
++|.||||+|++.|+|||||+++||+|. +|..|.++.++.| +|++| ++++- ..|.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~s---------------st~~~----~~~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSAS---------------STYSD----NGCTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCC---------------CCCCC----CCcEEEEE
Confidence 4799999999999999999999999998 8988876666667 88887 24442 67899999
Q ss_pred eCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEec
Q 014185 149 YGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGL 203 (429)
Q Consensus 149 Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGL 203 (429)
|++| .+.|.+++|+|+| ++..++++.|||++...+.+ +.....+|||||
T Consensus 61 Y~~g-~~~g~~~~D~v~i----g~~~~~~~~fg~~~~~~~~~-~~~~~~~GilGL 109 (109)
T cd05470 61 YGTG-SLSGGLSTDTVSI----GDIEVVGQAFGCATDEPGAT-FLPALFDGILGL 109 (109)
T ss_pred eCCC-eEEEEEEEEEEEE----CCEEECCEEEEEEEecCCcc-ccccccccccCC
Confidence 9999 7889999999999 88889999999999874432 223578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.15 E-value=8.4e-06 Score=63.12 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=66.0
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeE
Q 014185 67 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYE 146 (429)
Q Consensus 67 ~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~ 146 (429)
.|++++.|+ ++++.++||||++.+|+... -...+. . + . . ......
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~-----~--~-~-------------------~-----~~~~~~ 46 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLG-----L--P-L-------------------T-----LGGKVT 46 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcC-----C--C-c-------------------c-----CCCcEE
Confidence 589999999 89999999999999999653 111111 0 0 0 0 223566
Q ss_pred eEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecC
Q 014185 147 IEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLG 204 (429)
Q Consensus 147 ~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg 204 (429)
+...+|.........+.+++ |+....++.+....... ...+||||+.
T Consensus 47 ~~~~~G~~~~~~~~~~~i~i----g~~~~~~~~~~v~d~~~-------~~~~gIlG~d 93 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQI----GGITLRNVPAVVLPGDA-------LGVDGLLGMD 93 (96)
T ss_pred EEecCCCccceEEEcceEEE----CCcEEeccEEEEeCCcc-------cCCceEeChH
Confidence 77777766666677889999 88888888887776641 1589999985
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.41 E-value=0.0012 Score=53.47 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=65.3
Q ss_pred eeccCCCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCC
Q 014185 57 RALGSIYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRC 136 (429)
Q Consensus 57 p~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~ 136 (429)
++..+ .++.|++++.|. ++++.++||||++.+.+... --... ..++..
T Consensus 3 ~i~~~--~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~-~A~~L------gl~~~~--------------------- 50 (121)
T TIGR02281 3 QLAKD--GDGHFYATGRVN--GRNVRFLVDTGATSVALNEE-DAQRL------GLDLNR--------------------- 50 (121)
T ss_pred EEEEc--CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHc------CCCccc---------------------
Confidence 44433 477899999998 88999999999999988543 00000 001100
Q ss_pred CCCCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecC
Q 014185 137 KHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLG 204 (429)
Q Consensus 137 ~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg 204 (429)
......+.-..|......+.-|.+.+ |+....++.+.++... ...+|+||+.
T Consensus 51 ----~~~~~~~~ta~G~~~~~~~~l~~l~i----G~~~~~nv~~~v~~~~--------~~~~~LLGm~ 102 (121)
T TIGR02281 51 ----LGYTVTVSTANGQIKAARVTLDRVAI----GGIVVNDVDAMVAEGG--------ALSESLLGMS 102 (121)
T ss_pred ----CCceEEEEeCCCcEEEEEEEeCEEEE----CCEEEeCcEEEEeCCC--------cCCceEcCHH
Confidence 12234444455644445567899999 9998888887766442 2248999985
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.85 E-value=0.0086 Score=45.33 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=55.0
Q ss_pred EEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCCCCCCCCCCCCeeEeEe
Q 014185 70 VNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNPPRCKHPNDQCDYEIEY 149 (429)
Q Consensus 70 ~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t~~~~~~~~~~~~~~~Y 149 (429)
+++.|+ .+++.+++|||++.+.+... -..... ..+ .. ......+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~l~------~~~---------------------~~----~~~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS-LAKKLG------LKP---------------------RP----KSVPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH-HHHHcC------CCC---------------------cC----CceeEEEEe
Confidence 467788 89999999999998888543 110000 000 00 111344444
Q ss_pred CCCCeEEEEEEEEEEEEeecCCcccccceEEeeeeecCCCCCCCCCCCceEEecC
Q 014185 150 GDGGSSIGALVTDLFPLRFSNGSVFNVPLTFGCGYNQHNPGPLSPPDTAGVLGLG 204 (429)
Q Consensus 150 ~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~fg~~~~~~~~~~~~~~~~~GIlGLg 204 (429)
.+|........-+.+++ |+....++.|-..... ...+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~i----g~~~~~~~~~~v~~~~--------~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITI----GGITLKNVPFLVVDLG--------DPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEE----CCEEEEeEEEEEECCC--------CCCEEEeCCc
Confidence 45544445566678888 8877777777666622 5689999973
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.79 E-value=0.088 Score=42.81 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=27.0
Q ss_pred CceEEEEEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 65 LGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 65 ~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
...+++++.|+ ++++.+++|||++.+++...
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 34689999999 99999999999999999643
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=94.75 E-value=0.53 Score=44.94 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCC----cEE-EEEEecCCCceeeeCC
Q 014185 67 YFAVNLTVGKPP----KLF-DFDFDTGSDLTWVQCD 97 (429)
Q Consensus 67 ~y~~~i~iGtP~----q~~-~~~~DTGSs~~wv~~~ 97 (429)
.-++.|+|=.|+ |++ +|+|||||.=|-|..+
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 345666665443 666 8999999998887554
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.91 E-value=0.24 Score=40.25 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=23.2
Q ss_pred CceeEcccceeceEEEEeCCCCEEEE
Q 014185 389 ENNIIGEIFMQDKMVIYDNEKQRIGW 414 (429)
Q Consensus 389 ~~~ilG~~fl~~~y~vfD~~~~~iGf 414 (429)
...|||..||+.+-.+.|+.+++|-+
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCCEEEC
Confidence 46799999999999999999998853
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=93.59 E-value=0.49 Score=41.25 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=59.1
Q ss_pred eEEeeccCCCCCceEEEEEEeCCCCcEEEEEEecCCCceeeeCCCCCCCCCCCCCCCCcCCCCccCCCcccccCCCCCCC
Q 014185 54 VFLRALGSIYPLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCDAPCTGCTKPPEKQYKPHKNIVPCSNPRCAALHWPNP 133 (429)
Q Consensus 54 ~~~p~~~~~~~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~~~c~~C~~~~~~~y~~~~S~~~C~~~~C~~~~~~~t 133 (429)
..+.+..+ .+|.|.++..|- +|++..++|||-+..-+..+ .- ..-.|+..+
T Consensus 94 ~~v~Lak~--~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA------~RlGid~~~------------------ 144 (215)
T COG3577 94 QEVSLAKS--RDGHFEANGRVN--GKKVDFLVDTGATSVALNEE-DA------RRLGIDLNS------------------ 144 (215)
T ss_pred eEEEEEec--CCCcEEEEEEEC--CEEEEEEEecCcceeecCHH-HH------HHhCCCccc------------------
Confidence 34455433 478999999999 99999999999998888644 10 111233322
Q ss_pred CCCCCCCCCCeeEeEeCCCCeEEEEEEEEEEEEeecCCcccccceE
Q 014185 134 PRCKHPNDQCDYEIEYGDGGSSIGALVTDLFPLRFSNGSVFNVPLT 179 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~Y~~gs~~~G~~~~D~v~l~~~~g~~~~~~~~ 179 (429)
.+.++.+.-.+|..-...+--|++.| |+....++.
T Consensus 145 -------l~y~~~v~TANG~~~AA~V~Ld~v~I----G~I~~~nV~ 179 (215)
T COG3577 145 -------LDYTITVSTANGRARAAPVTLDRVQI----GGIRVKNVD 179 (215)
T ss_pred -------cCCceEEEccCCccccceEEeeeEEE----ccEEEcCch
Confidence 23466666778855566788899999 887776664
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.04 E-value=0.11 Score=39.54 Aligned_cols=28 Identities=36% Similarity=0.460 Sum_probs=25.1
Q ss_pred EEEEEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 68 FAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 68 y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
|++++.|+ ++++.+++||||+..++..+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57899999 99999999999999999654
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.26 E-value=0.86 Score=34.22 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.3
Q ss_pred EEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 71 NLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 71 ~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
.+.|. ++++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 46676 89999999999999999654
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.51 E-value=0.5 Score=34.18 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCceEEEEEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 64 PLGYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 64 ~~~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
..+.+++++.|| ++.+.+++|||++...|+.+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 356899999999 89999999999999998654
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.31 E-value=1.8 Score=35.74 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=26.1
Q ss_pred CceeEcccceeceEEEEeCCCCEEEEecC
Q 014185 389 ENNIIGEIFMQDKMVIYDNEKQRIGWKPE 417 (429)
Q Consensus 389 ~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 417 (429)
-..|||.++|+.+..+-|..+++|-|...
T Consensus 104 ~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 104 YDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 36899999999999999999999999753
No 38
>PF15284 PAGK: Phage-encoded virulence factor
Probab=89.62 E-value=0.24 Score=33.82 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=28.3
Q ss_pred cceehhhHHHHHHHHHHhhcCccccccccCCcc
Q 014185 5 MKITSSTTMVFLFLVMSANFPGTFSYTKQIPAK 37 (429)
Q Consensus 5 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 37 (429)
||++++++..++|+|+++.|.+++-|+..++.+
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamAa~~~~~~ 33 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMAADSSPHR 33 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHhhCCCC
Confidence 788999999999999999999988887666544
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.07 E-value=1.5 Score=34.57 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred CceeEcccceeceEEEEeCCCCEE
Q 014185 389 ENNIIGEIFMQDKMVIYDNEKQRI 412 (429)
Q Consensus 389 ~~~ilG~~fl~~~y~vfD~~~~~i 412 (429)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999987753
No 40
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.31 E-value=1.7 Score=35.04 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=27.9
Q ss_pred CCEEeeecEEEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 261 KHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 261 ~~w~v~l~~i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
++|.+. +.|||+.+ .++||||++.+.+++++.+++
T Consensus 10 g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 666555 55788744 799999999999999988765
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=85.85 E-value=1.2 Score=34.22 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.6
Q ss_pred EEEEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 69 AVNLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 69 ~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
+++|.|. .+++.+++||||+.+.++.+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 5788888 88999999999999998654
No 42
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.43 E-value=1.4 Score=32.87 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=24.4
Q ss_pred EEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 270 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 270 i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
+.++|+.+ .+++|||++.+.+.++.++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56777644 799999999999999988776
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.47 E-value=1.9 Score=31.10 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=24.9
Q ss_pred EEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 270 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 270 i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
+.|+|..+ .+++|||++..+++.+.++.+
T Consensus 13 ~~I~g~~~-----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----EEEEeCCCcceecCHHHHHHh
Confidence 56777655 599999999999999999877
No 44
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.49 E-value=2.6 Score=31.83 Aligned_cols=30 Identities=20% Similarity=0.527 Sum_probs=25.5
Q ss_pred EEEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 269 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 269 ~i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
.+.|+|+.+ .+.+|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i-----~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-----KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-----EEEEcCCcceEEeCHHHHHHh
Confidence 366888866 689999999999999998865
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=78.30 E-value=3 Score=31.45 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.6
Q ss_pred EEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 71 NLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 71 ~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
++.|+ +|.+.+++|||+.++.+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 56777 99999999999999999643
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.50 E-value=4.5 Score=30.43 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 270 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 270 i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
+.++++.+ .++||||++.+.++.+..+++
T Consensus 7 v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 55776654 799999999999999887665
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=75.63 E-value=4.5 Score=30.24 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=24.6
Q ss_pred EEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 270 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 270 i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
+.|||+.+ .+++|||.+.+.+++...+.+
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 56777755 689999999999999998875
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=64.31 E-value=7.7 Score=29.70 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=21.3
Q ss_pred EEEECCEEeccCCCcEEEecCCcceeecHHHH
Q 014185 269 ELLYSGKSCGLKDLTLIFDSGASYAYFTSRVY 300 (429)
Q Consensus 269 ~i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~ 300 (429)
.|.++|+.+ .++||||+..+.++.+.+
T Consensus 9 ~v~i~g~~i-----~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-----KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-----EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-----EEEEecCCCcceeccccc
Confidence 466777755 799999999999997543
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=63.25 E-value=50 Score=25.82 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=19.8
Q ss_pred EEEEeCCCC----cEEEEEEecCCCcee-ee
Q 014185 70 VNLTVGKPP----KLFDFDFDTGSDLTW-VQ 95 (429)
Q Consensus 70 ~~i~iGtP~----q~~~~~~DTGSs~~w-v~ 95 (429)
+++.|..|. -++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 678888873 267899999998665 54
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=61.42 E-value=10 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=24.1
Q ss_pred EEECCEEeccCCCcEEEecCCcceeecHHHHHHHH
Q 014185 270 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEIV 304 (429)
Q Consensus 270 i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l~ 304 (429)
+.++|+ ....+.+|||++...+|...++++.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 456663 2347999999999999999888765
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=58.30 E-value=14 Score=31.26 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=22.5
Q ss_pred EEEEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 69 AVNLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 69 ~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
..++.++....++.++|||||..-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555589999999999999888654
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=57.20 E-value=17 Score=29.39 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=22.9
Q ss_pred EEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 270 LLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 270 i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
+++||+.+ .|++|||+..+.++.+.++++
T Consensus 29 ~~ing~~v-----kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-----KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-----EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-----EEEEeCCCCccccCHHHHHHc
Confidence 56788765 799999999999999998873
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=56.60 E-value=26 Score=30.86 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=28.6
Q ss_pred CCCEEeeecEEEECCEEeccCCCcEEEecCCcceeecHHHHHHH
Q 014185 260 LKHYILGPAELLYSGKSCGLKDLTLIFDSGASYAYFTSRVYQEI 303 (429)
Q Consensus 260 ~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGt~~~~lp~~~~~~l 303 (429)
.+||.++ ..|||+.+ ..++|||.|...++++...++
T Consensus 103 ~GHF~a~---~~VNGk~v-----~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKV-----DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEE-----EEEEecCcceeecCHHHHHHh
Confidence 3677654 56899877 689999999999999887643
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=54.58 E-value=22 Score=28.80 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=22.8
Q ss_pred ceEEEEEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 66 GYFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 66 ~~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
..+|++++|. ++++++.+|||...+-+...
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 3689999999 99999999999999988643
No 55
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=53.77 E-value=27 Score=30.79 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=20.9
Q ss_pred CCceeEcccceeceEEEEeCCCCEEEEec
Q 014185 388 GENNIIGEIFMQDKMVIYDNEKQRIGWKP 416 (429)
Q Consensus 388 ~~~~ilG~~fl~~~y~vfD~~~~~iGfa~ 416 (429)
+-..|||.+|+|.|+=....+ .+|-|-.
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 357899999999887666665 4566654
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.37 E-value=13 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=18.8
Q ss_pred cEEEecCCc-ceeecHHHHHHHH
Q 014185 283 TLIFDSGAS-YAYFTSRVYQEIV 304 (429)
Q Consensus 283 ~aiiDSGt~-~~~lp~~~~~~l~ 304 (429)
..++|||.+ ++.+|+.+++++-
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 348999999 9999999998753
No 57
>PF15240 Pro-rich: Proline-rich
Probab=50.25 E-value=5.7 Score=34.04 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCccccccccCCcc
Q 014185 15 FLFLVMSANFPGTFSYTKQIPAK 37 (429)
Q Consensus 15 ~~~~ll~~~~~~~~~~~~~~~~~ 37 (429)
||++||+++|+|+.+|-.++..+
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv 23 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDV 23 (179)
T ss_pred ChhHHHHHHHHHhhhcccccccc
Confidence 56677777777777776655544
No 58
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=44.50 E-value=1.1e+02 Score=29.52 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=31.5
Q ss_pred EE-EEEEcCCCCCCCCceeEcccceeceEEEEeCCCCEEEEecC
Q 014185 375 VC-LGILNGSEAEVGENNIIGEIFMQDKMVIYDNEKQRIGWKPE 417 (429)
Q Consensus 375 ~C-~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iGfa~~ 417 (429)
.| +.++... .-...||...||.+--..|++++++-|+..
T Consensus 307 ~c~ftV~d~~----~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDRR----DMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecCC----CcchhhhHHHHHhccceeecccCeEEecCC
Confidence 37 6666554 346789999999999999999999988764
No 59
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=43.97 E-value=18 Score=27.47 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEeCCCC-cEEEEEEecCCCceeeeCC
Q 014185 72 LTVGKPP-KLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 72 i~iGtP~-q~~~~~~DTGSs~~wv~~~ 97 (429)
+.|. . +++++.+|||++..-++-+
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~~ 27 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPLR 27 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccHH
Confidence 4555 5 8999999999998888643
No 60
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=36.73 E-value=86 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=20.0
Q ss_pred CCcEEEecCCcceeecHHHHHHHH
Q 014185 281 DLTLIFDSGASYAYFTSRVYQEIV 304 (429)
Q Consensus 281 ~~~aiiDSGt~~~~lp~~~~~~l~ 304 (429)
...++||||++..+.-.++.+.|-
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 347999999999999888887653
No 61
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=33.19 E-value=84 Score=28.85 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=27.3
Q ss_pred eeEEeeccCCCCCceEEEE---EEeCCC-------------CcEEEEEEecCCCceeeeCC
Q 014185 53 SVFLRALGSIYPLGYFAVN---LTVGKP-------------PKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 53 ~~~~p~~~~~~~~~~y~~~---i~iGtP-------------~q~~~~~~DTGSs~~wv~~~ 97 (429)
....|+..+.-....|.++ |+||.- .....+++|||++.+.++..
T Consensus 133 l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 133 VVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred ceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 3455665331112356554 678731 12346899999999999754
No 62
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=30.66 E-value=77 Score=29.31 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=27.1
Q ss_pred eEEeeccCCCCCceEEEE---EEeCC---CCcEEEEEEecCCCceeeeCC
Q 014185 54 VFLRALGSIYPLGYFAVN---LTVGK---PPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 54 ~~~p~~~~~~~~~~y~~~---i~iGt---P~q~~~~~~DTGSs~~wv~~~ 97 (429)
.-.|+..+. ....|.++ |.||. +.....++||||++.+.++..
T Consensus 146 ~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 146 TWTPMRRES-QKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eecccccCC-CCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 344554332 12356655 57873 223457999999999999854
No 63
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=26.74 E-value=59 Score=28.98 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=6.3
Q ss_pred CceEEEEEEe
Q 014185 65 LGYFAVNLTV 74 (429)
Q Consensus 65 ~~~y~~~i~i 74 (429)
+|.+++.+++
T Consensus 65 nGK~~Vt~Tl 74 (217)
T TIGR03656 65 NGKMTVQITV 74 (217)
T ss_pred CCEEEEEEEE
Confidence 4566666666
No 64
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=26.13 E-value=85 Score=30.59 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=13.8
Q ss_pred EEEEecCCCceeeeCC
Q 014185 82 DFDFDTGSDLTWVQCD 97 (429)
Q Consensus 82 ~~~~DTGSs~~wv~~~ 97 (429)
.++||||++.+.++..
T Consensus 231 g~iiDSGTs~t~lp~~ 246 (362)
T cd05489 231 GVKLSTVVPYTVLRSD 246 (362)
T ss_pred cEEEecCCceEEECHH
Confidence 5999999999998654
No 65
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=25.44 E-value=77 Score=29.70 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=27.3
Q ss_pred eeEEeeccCCCCCceEEEE---EEeCCCC--------cEEEEEEecCCCceeeeCC
Q 014185 53 SVFLRALGSIYPLGYFAVN---LTVGKPP--------KLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 53 ~~~~p~~~~~~~~~~y~~~---i~iGtP~--------q~~~~~~DTGSs~~wv~~~ 97 (429)
...+|+..+......|.++ |.||... ....+++|||++.+.++..
T Consensus 133 l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 133 ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred ceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 3455655332123457666 5777321 1235899999999999753
No 66
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=24.87 E-value=1.3e+02 Score=27.61 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=29.4
Q ss_pred ceeEEeeccCCCCCceEEEE---EEeCC-----CCcEEEEEEecCCCceeeeCC
Q 014185 52 SSVFLRALGSIYPLGYFAVN---LTVGK-----PPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 52 ~~~~~p~~~~~~~~~~y~~~---i~iGt-----P~q~~~~~~DTGSs~~wv~~~ 97 (429)
.....|+... ....|.+. |.||. ......++||||++.++++..
T Consensus 168 ~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 168 DLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred ceEEEecCCC--CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 3445566542 13456655 46764 246779999999999999754
No 67
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.46 E-value=1.1e+02 Score=25.09 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=24.3
Q ss_pred eEEEEEEeCCCCcEEEEEEecCCCceeeeCC
Q 014185 67 YFAVNLTVGKPPKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 67 ~y~~~i~iGtP~q~~~~~~DTGSs~~wv~~~ 97 (429)
.-.+.+.|. .++..++||+|++..+|..+
T Consensus 21 vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 21 VITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred eEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 467788888 78999999999999998543
No 68
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=23.28 E-value=3.7e+02 Score=23.80 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=41.6
Q ss_pred CCEEeeecEEEECCEEeccCCCcEEEec-CCcceeecHHHHHHHHHHHHHHhc
Q 014185 261 KHYILGPAELLYSGKSCGLKDLTLIFDS-GASYAYFTSRVYQEIVSLIMRDLI 312 (429)
Q Consensus 261 ~~w~v~l~~i~v~~~~~~~~~~~aiiDS-Gt~~~~lp~~~~~~l~~~i~~~~~ 312 (429)
.+-.+.+++|.+++..+++. ..+.|. |-..+|+|.+......+++.+...
T Consensus 101 ~Rl~i~I~SI~~~~~IipV~--L~vYD~DG~eGlyVP~s~~~~a~ke~~~~~~ 151 (200)
T PF12508_consen 101 QRLLITITSIEYGGNIIPVE--LSVYDLDGQEGLYVPNSAEREAAKEMAANAG 151 (200)
T ss_pred cEEEEEEEEEEECCEEEEEE--EEEECCCCCcccccCCchHHHHHHHHHHHHh
Confidence 67889999999999988764 567775 889999999999888888877654
No 69
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=22.26 E-value=82 Score=21.86 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=16.5
Q ss_pred EEEeCCCCcEEEEEEecCCCceee
Q 014185 71 NLTVGKPPKLFDFDFDTGSDLTWV 94 (429)
Q Consensus 71 ~i~iGtP~q~~~~~~DTGSs~~wv 94 (429)
++.++ +..+..++||||...-+
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEEC--CEEEEEEEcCCCccccc
Confidence 34555 47889999999886554
No 70
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.05 E-value=1.1e+02 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=22.5
Q ss_pred ceEEEE---EEeCCC-----CcEEEEEEecCCCceeeeCC
Q 014185 66 GYFAVN---LTVGKP-----PKLFDFDFDTGSDLTWVQCD 97 (429)
Q Consensus 66 ~~y~~~---i~iGtP-----~q~~~~~~DTGSs~~wv~~~ 97 (429)
..|.++ |.||.. .+...++||||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 356665 577742 23457999999999999753
Done!