Query 014188
Match_columns 429
No_of_seqs 57 out of 59
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 02:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06219 DUF1005: Protein of u 100.0 4E-212 8E-217 1569.4 42.4 423 1-427 1-460 (460)
2 cd08400 C2_Ras_p21A1 C2 domain 93.3 2 4.3E-05 36.5 11.6 104 35-166 22-125 (126)
3 cd08690 C2_Freud-1 C2 domain f 92.1 5.9 0.00013 36.2 13.6 122 35-188 25-150 (155)
4 cd08378 C2B_MCTP_PRT_plant C2 88.9 4.7 0.0001 34.2 9.5 102 34-162 16-118 (121)
5 cd04022 C2A_MCTP_PRT_plant C2 88.5 4.6 0.0001 33.9 9.1 104 36-163 22-125 (127)
6 cd08682 C2_Rab11-FIP_classI C2 87.2 5 0.00011 33.6 8.6 105 35-161 20-125 (126)
7 cd08678 C2_C21orf25-like C2 do 86.9 12 0.00025 31.5 10.7 106 34-167 17-123 (126)
8 cd04013 C2_SynGAP_like C2 doma 86.3 9.1 0.0002 34.7 10.3 102 36-164 28-139 (146)
9 cd04036 C2_cPLA2 C2 domain pre 84.0 18 0.00038 30.0 10.2 99 34-164 20-118 (119)
10 cd04019 C2C_MCTP_PRT_plant C2 83.3 4.4 9.5E-05 36.1 6.8 107 35-164 21-132 (150)
11 cd04024 C2A_Synaptotagmin-like 82.1 14 0.0003 30.4 8.9 102 36-162 25-127 (128)
12 cd04051 C2_SRC2_like C2 domain 81.6 22 0.00048 29.4 10.0 104 34-159 20-125 (125)
13 cd04025 C2B_RasA1_RasA4 C2 dom 81.1 13 0.00028 30.9 8.4 99 36-162 22-123 (123)
14 cd04015 C2_plant_PLD C2 domain 80.5 7.8 0.00017 34.6 7.4 100 33-162 56-156 (158)
15 cd08373 C2A_Ferlin C2 domain f 79.4 36 0.00077 28.5 11.0 104 36-167 16-120 (127)
16 cd08379 C2D_MCTP_PRT_plant C2 78.6 24 0.00052 30.9 9.6 103 34-159 23-125 (126)
17 cd04016 C2_Tollip C2 domain pr 77.6 37 0.0008 29.5 10.5 98 36-162 23-120 (121)
18 cd04043 C2_Munc13_fungal C2 do 72.7 53 0.0012 27.1 10.4 99 35-165 22-122 (126)
19 cd04046 C2_Calpain C2 domain p 70.7 29 0.00063 29.3 7.9 100 36-167 25-125 (126)
20 cd08391 C2A_C2C_Synaptotagmin_ 69.2 60 0.0013 26.3 10.1 93 35-162 28-120 (121)
21 cd08688 C2_KIAA0528-like C2 do 66.0 39 0.00085 27.8 7.7 87 35-143 21-107 (110)
22 cd08401 C2A_RasA2_RasA3 C2 dom 63.0 30 0.00065 29.3 6.6 99 35-163 22-121 (121)
23 cd04042 C2A_MCTP_PRT C2 domain 60.2 47 0.001 27.5 7.2 61 93-165 61-121 (121)
24 cd08681 C2_fungal_Inn1p-like C 57.7 1E+02 0.0023 25.1 9.2 95 35-162 22-117 (118)
25 PF08122 NDUF_B12: NADH-ubiqui 56.7 3.7 7.9E-05 32.3 0.0 14 285-298 3-16 (57)
26 cd04017 C2D_Ferlin C2 domain f 56.2 1.2E+02 0.0025 26.0 9.1 105 36-163 23-131 (135)
27 cd04011 C2B_Ferlin C2 domain s 55.7 79 0.0017 25.9 7.7 86 37-144 23-109 (111)
28 cd04014 C2_PKC_epsilon C2 doma 49.6 91 0.002 26.3 7.3 95 35-165 35-130 (132)
29 COG3287 Uncharacterized conser 49.5 20 0.00044 37.7 4.0 46 132-179 187-232 (379)
30 cd08381 C2B_PI3K_class_II C2 d 48.2 1.6E+02 0.0036 24.9 8.7 41 93-144 81-122 (122)
31 cd04033 C2_NEDD4_NEDD4L C2 dom 47.5 61 0.0013 27.0 5.9 64 93-163 67-132 (133)
32 cd04050 C2B_Synaptotagmin-like 39.5 2.1E+02 0.0045 23.2 8.0 81 35-145 21-102 (105)
33 PLN03008 Phospholipase D delta 37.8 81 0.0018 36.7 6.7 108 32-169 74-185 (868)
34 PF00055 Laminin_N: Laminin N- 34.6 25 0.00054 34.2 1.9 59 268-337 110-176 (237)
35 PF13046 DUF3906: Protein of u 34.0 38 0.00082 27.9 2.5 20 304-323 4-23 (64)
36 cd08383 C2A_RasGAP C2 domain ( 33.5 2.6E+02 0.0055 22.6 7.8 98 35-162 18-116 (117)
37 cd04052 C2B_Tricalbin-like C2 33.4 1E+02 0.0022 25.5 5.0 97 35-164 13-109 (111)
38 cd04054 C2A_Rasal1_RasA4 C2 do 32.8 1.4E+02 0.0031 24.9 5.9 100 35-163 21-121 (121)
39 TIGR02705 nudix_YtkD nucleosid 28.7 36 0.00078 31.3 1.8 53 236-291 2-55 (156)
40 cd08376 C2B_MCTP_PRT C2 domain 28.6 2.6E+02 0.0057 22.7 6.7 93 36-163 22-114 (116)
41 PF12416 DUF3668: Cep120 prote 26.9 4.8E+02 0.01 27.2 9.6 114 35-166 18-134 (340)
42 cd04044 C2A_Tricalbin-like C2 26.8 2.1E+02 0.0045 23.3 5.8 97 35-165 24-124 (124)
43 cd04030 C2C_KIAA1228 C2 domain 26.8 3.6E+02 0.0078 22.2 9.5 87 35-143 37-126 (127)
44 PLN02270 phospholipase D alpha 26.5 81 0.0018 36.4 4.4 53 113-169 101-156 (808)
45 cd00276 C2B_Synaptotagmin C2 d 25.1 3.9E+02 0.0084 22.0 7.3 84 34-145 34-122 (134)
46 cd08393 C2A_SLP-1_2 C2 domain 24.1 3.2E+02 0.007 23.1 6.6 82 35-143 37-124 (125)
47 cd08386 C2A_Synaptotagmin-7 C2 23.6 4.2E+02 0.0091 21.8 8.6 82 36-143 38-123 (125)
48 PF08495 FIST: FIST N domain; 23.6 1.4E+02 0.003 26.3 4.4 33 132-177 166-198 (198)
49 cd08521 C2A_SLP C2 domain firs 22.4 3.2E+02 0.007 22.2 6.2 68 36-125 37-109 (123)
50 PF11445 DUF2894: Protein of u 21.1 21 0.00046 34.6 -1.2 17 290-306 1-19 (200)
51 TIGR03835 termin_org_DnaJ term 20.4 7.3E+02 0.016 29.4 10.1 102 49-169 632-741 (871)
52 PF00408 PGM_PMM_IV: Phosphogl 20.1 59 0.0013 25.4 1.3 13 269-281 35-47 (73)
No 1
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=100.00 E-value=3.8e-212 Score=1569.40 Aligned_cols=423 Identities=61% Similarity=1.058 Sum_probs=389.9
Q ss_pred CCCcceeeeeeccccccccCCCC-CCCCcccccCCCceeEEEecCCCCcceeeeccccCCCCC-CCCCCcceeeecCHHH
Q 014188 1 MDPQAFIRLSIGSLGLRIPGSAL-NSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEAL-PDIHSIASSFYLEESD 78 (429)
Q Consensus 1 MDPc~FVRl~Vg~LaLr~P~~~~-~s~~~gVhpssspC~C~IrL~~fP~qta~vPL~~~~~~~-p~~~~~Aa~F~Ld~s~ 78 (429)
|||||||||+|||||||||..++ +++.++|||+++||||||||+|||+|||+|||+++++.. ||++++||+|||||+|
T Consensus 1 MDPcpFVRl~Vg~LaLk~P~~~~~~~a~sgvhpssspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~ 80 (460)
T PF06219_consen 1 MDPCPFVRLSVGNLALKIPSSSASKSAGSGVHPSSSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSD 80 (460)
T ss_pred CCCCceEEEEecceeecCCCCcCCCCCcCccccCCCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHH
Confidence 99999999999999999996544 455567999999999999999999999999999988866 5899999999999999
Q ss_pred HHHhhCCCCCCCCCceEEEEEEecCCCccccc-CCcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCC-CCCcE
Q 014188 79 LKALLTPGCFYSPHAYLEVVVFTGRKGFHCGV-GIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETG-KPGAE 156 (429)
Q Consensus 79 l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv-~~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~-k~~ae 156 (429)
|++|++|+||+.+.++|||+||+||+|++||| +++| |||+|+|+|||+|+|+||++||||||+|||++++++ +++||
T Consensus 81 l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~~k-lLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~ae 159 (460)
T PF06219_consen 81 LRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNSGK-LLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAE 159 (460)
T ss_pred HHHHhCCCccccCCceEEEEEEECCCCCcccccccce-EEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcce
Confidence 99999999999989999999999999999999 5566 999999999999999999999999999999866554 47999
Q ss_pred EEEEEeecCCCceEEEeCCccccCceEEEeecCcccceeEEEeecCCCC-----Cccccc------ccccCCcccccccc
Q 014188 157 LHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGP-----QVDLLS------SYWSGSVDCNALET 225 (429)
Q Consensus 157 lHl~Vr~EpDPRyVFQFdgepecsPqV~QvqG~~rQPvFsCKFsrdr~~-----r~~~l~------~~w~~s~~~~e~e~ 225 (429)
|||+||+|||||||||||||||||||||||||+|||||||||||+|++. |+++++ ++|+.+..++|+|+
T Consensus 160 LHl~Vr~EpDPRfVFQFdgepecSPQV~QiqG~~rQPvFsCKFs~~~~~~~~~~~sr~~~~~~~~sr~W~~s~~~se~e~ 239 (460)
T PF06219_consen 160 LHLVVRAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFSCKFSRDRNSQRDPLRSRSLSSDPSSSRSWSSSSFGSERER 239 (460)
T ss_pred EEEEEeccCCCeeEEEcCCccccCcEEEEecCccccceeEEEEEecccCCcccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999988777 444443 89944433999999
Q ss_pred ccccccCeEEEEecCCCChhhhhhhccccccCCCCCcccccCCceEEEEeeCCCCCCCcccccchhhhhccCCCCceeeE
Q 014188 226 ERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCR 305 (429)
Q Consensus 226 ~~kERKGW~VtIHDLSGSpVAaAsMvTPFVPSpGsdrVsRSNPGAWLIlRP~~~~~~sWkPWGRLEAWRErG~~d~lgyR 305 (429)
++||||||+|||||||||||||||||||||||||||||||||||||||||||++ +|||||||||||||||++|+||||
T Consensus 240 ~~rERKGW~VtIHDLSGSPVAaASMvTPFVPSpGSDrVSRSNPGAWLILRP~~~--gsWkPWGRLEAWRErg~~d~lgyr 317 (460)
T PF06219_consen 240 PRRERKGWSVTIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGAWLILRPDGD--GSWKPWGRLEAWRERGGSDGLGYR 317 (460)
T ss_pred ccccccCcEEEEEcCCCCHHHHhhhcCCccCCCCCCceeccCCCeEEEEecCCC--CCcccchhhhhhhccCCCCcceeE
Confidence 999999999999999999999999999999999999999999999999999887 699999999999999999999999
Q ss_pred EEEeecCCccceeEeeeeeeecccCceeEEecCcccccCCCCCCCCC----------------------CCCCCCCCCCc
Q 014188 306 FHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQ----------------------SSGDFSGLGPV 363 (429)
Q Consensus 306 feLl~d~~~~~~v~~aes~is~~kGG~F~ID~~~~~~~~~sp~~sp~----------------------~sgd~~~~~p~ 363 (429)
||||+|++.+++|+|||++||++|||||+||++++...+++|.+||+ +++|| ++||.
T Consensus 318 feL~~~~~~~~~v~~aes~is~~kGG~F~ID~~~~~~~~~tp~~sp~~s~d~~s~~~~~~~~~~~~~~~~~~df-~~~~~ 396 (460)
T PF06219_consen 318 FELLPDGGVGGGVLVAESTISSKKGGEFSIDTDRQSTSATTPAPSPRSSGDFSSLSGSGSGGSPRCSPGSSGDF-GLWPG 396 (460)
T ss_pred EEEccCCCCCceEEEeeeeeccccCceeEEecCcccccccCCCCCCCCCccccccCCccCCCCCCCCCCCcccc-ccccC
Confidence 99999998899999999999999999999999876333444554444 44455 45777
Q ss_pred ccceeEeeEEeccCccCCceEEEeeeeecchhhHHHHHHHHhhhcccccccccchhhHhhhhcc
Q 014188 364 IGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRKLRRRSHH 427 (429)
Q Consensus 364 ~~GFVMs~~V~GEgk~SkP~Vqvgv~HVtC~EDAA~FvALAAAVDLSmdACrlFs~kLRkEL~~ 427 (429)
.+||||||+||||||||||+|||||||||||||||+||||||||||||||||||+|||||||||
T Consensus 397 ~~gfvms~~v~ge~~~skp~v~~~~~hv~c~edaa~f~alaaavdls~dac~~f~~klrkel~~ 460 (460)
T PF06219_consen 397 YGGFVMSCRVEGEGKCSKPTVQVGVRHVTCMEDAAAFVALAAAVDLSMDACRPFSRKLRKELCH 460 (460)
T ss_pred CCceeEeeecccCCccCCceEEEeeeeeehHHHHHHHHHHHHHhhhhHhhhhhhHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999997
No 2
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=93.28 E-value=2 Score=36.45 Aligned_cols=104 Identities=15% Similarity=0.294 Sum_probs=62.4
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-.||+|.|++...+++.+ .. ...|.= =-.|+++. . . +....|.|.||...+. +...
T Consensus 22 ~DPYv~v~l~~~~~~kT~v--~~--~~nP~W---nE~f~f~~------~-~----~~~~~l~v~v~d~~~~-----~~d~ 78 (126)
T cd08400 22 PHPYCVISLNEVKVARTKV--RE--GPNPVW---SEEFVFDD------L-P----PDVNSFTISLSNKAKR-----SKDS 78 (126)
T ss_pred CCeeEEEEECCEeEEEeec--CC--CCCCcc---CCEEEEec------C-C----CCcCEEEEEEEECCCC-----CCCC
Confidence 3459999999877544443 22 234441 12455531 1 1 1123688899997653 1223
Q ss_pred eeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCC
Q 014188 115 HQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPD 166 (429)
Q Consensus 115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpD 166 (429)
.||+++++|.- -..+.. ...|..+-..+.++.+..-+|||.++..+|
T Consensus 79 -~iG~v~i~l~~-l~~~~~---~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 79 -EIAEVTVQLSK-LQNGQE---TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -eEEEEEEEHhH-ccCCCc---ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 89999999872 222321 478999965432234456799999987665
No 3
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=92.08 E-value=5.9 Score=36.19 Aligned_cols=122 Identities=11% Similarity=0.173 Sum_probs=74.9
Q ss_pred CceeEEEec--CCCCcceeeeccccCCCCCCCCCCcceeeecCHHH--HHHhhCCCCCCCCCceEEEEEEecCCCccccc
Q 014188 35 SPCLCEIRL--RGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESD--LKALLTPGCFYSPHAYLEVVVFTGRKGFHCGV 110 (429)
Q Consensus 35 spC~C~IrL--~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~--l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv 110 (429)
+=.|.|+.| ++--.|+.--+.+ .....|.- +-...|.++..+ +.|.+.. ..|++.||.-+. +
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~-k~TlnPvf-NE~f~f~I~~~~~~~~R~l~~-------~~L~~~V~d~~~-----f 90 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTI-KDTNSPEY-NESFKLNINRKHRSFQRVFKR-------HGLKFEVYHKGG-----F 90 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcc-cCCCCCcc-cceEEEEeccccchhhhhccC-------CcEEEEEEeCCC-----c
Confidence 346999976 3233455555555 23334442 234457775442 5554444 479999998432 2
Q ss_pred CCcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCCCceEEEeCCccccCceEEEeec
Q 014188 111 GIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQG 188 (429)
Q Consensus 111 ~~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpDPRyVFQFdgepecsPqV~QvqG 188 (429)
.....+||++.|+|+.--.. +..|+ |+.+=.+. ++-|..||+.||+- ||..+-||.|++-
T Consensus 91 ~~~D~~iG~~~i~L~~l~~~---~~~~~-~~~L~~~~---k~~Gg~l~v~ir~r-----------~p~~~~~~~~~~~ 150 (155)
T cd08690 91 LRSDKLLGTAQVKLEPLETK---CEIHE-SVDLMDGR---KATGGKLEVKVRLR-----------EPLTGKQLEEITE 150 (155)
T ss_pred ccCCCeeEEEEEEccccccc---CcceE-EEEhhhCC---CCcCCEEEEEEEec-----------CCCccceeeeeee
Confidence 11234899999999742222 24565 99873322 13578999999984 7888889888864
No 4
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=88.89 E-value=4.7 Score=34.16 Aligned_cols=102 Identities=23% Similarity=0.305 Sum_probs=60.6
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
++..||+|+|.+...+|.. + .....|. -=-.|.++..++ ....|++.||.=.+. +
T Consensus 16 ~~Dpyv~v~l~~~~~kT~v---~-~~t~nP~---Wne~F~f~~~~~-----------~~~~L~~~v~d~d~~-------~ 70 (121)
T cd08378 16 SNDPVVEVKLGNYKGSTKA---I-ERTSNPE---WNQVFAFSKDRL-----------QGSTLEVSVWDKDKA-------K 70 (121)
T ss_pred cCCCEEEEEECCccccccc---c-CCCCCCc---cceEEEEEcCCC-----------cCCEEEEEEEeCCCC-------c
Confidence 3467999999986555543 2 2223343 112355542211 235899999985432 3
Q ss_pred ceeEEEEEEeecCCCCCCc-ceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188 114 RHQIGTFKLEVGPEWGEGK-PIILFNGWIGIGKNKQETGKPGAELHLKVK 162 (429)
Q Consensus 114 r~llG~~~v~ldl~~ae~k-p~v~h~GWi~iGk~~~~~~k~~aelHl~Vr 162 (429)
..+||+++++|+---.... .-..++.|..+-..+ +.+..-||||.+.
T Consensus 71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~--~~~~~G~i~l~~~ 118 (121)
T cd08378 71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK--GGRVGGELMLAVW 118 (121)
T ss_pred CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC--CCccceEEEEEEE
Confidence 3489999999973211111 122378999996532 2456679999875
No 5
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=88.51 E-value=4.6 Score=33.87 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=60.6
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
-+||++.+.+-..+|..+ .....|.= +-.-.|++.+.. .+- ...|+|.||.-.+ +..+..
T Consensus 22 dpyv~v~~~~~~~rT~v~----~~t~nP~W-ne~f~f~~~~~~--~~~--------~~~l~~~V~d~~~-----~~~~d~ 81 (127)
T cd04022 22 SAYVELDFDGQKKRTRTK----PKDLNPVW-NEKLVFNVSDPS--RLS--------NLVLEVYVYNDRR-----SGRRRS 81 (127)
T ss_pred CcEEEEEECCEEecceeE----cCCCCCcc-ceEEEEEccCHH--Hcc--------CCeEEEEEeeCCC-----CcCCCC
Confidence 458999999866555543 12233431 223456654322 111 2479999998332 111233
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEee
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKL 163 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~ 163 (429)
+||+++|+++---.++. .+..|..+.+. ...++.+.||||.+-+
T Consensus 82 ~lG~v~i~l~~l~~~~~---~~~~w~~L~~~-~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 82 FLGRVRISGTSFVPPSE---AVVQRYPLEKR-GLFSRVRGEIGLKVYI 125 (127)
T ss_pred eeeEEEEcHHHcCCCCC---ccceEeEeeeC-CCCCCccEEEEEEEEE
Confidence 89999999962112232 35789999753 2234567799998754
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=87.19 E-value=5 Score=33.58 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=60.1
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-+||+|+|++--.+|..+- ....|.= +-.-.|++.....+. .....|.|.||.-.+ ++...
T Consensus 20 ~dpYv~v~l~~~~~kT~v~~----~t~nP~W-ne~f~F~v~~~~~~~--------~~~~~l~~~v~d~~~-----~~~d~ 81 (126)
T cd08682 20 NDAYVIIQLGKEKYSTSVKE----KTTSPVW-KEECSFELPGLLSGN--------GNRATLQLTVMHRNL-----LGLDK 81 (126)
T ss_pred CCceEEEEECCeeeeeeeec----CCCCCEe-CceEEEEecCcccCC--------CcCCEEEEEEEEccc-----cCCCc
Confidence 45699999987555554331 1133331 113356665421111 123589999998542 12234
Q ss_pred eeEEEEEEeecC-CCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEE
Q 014188 115 HQIGTFKLEVGP-EWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKV 161 (429)
Q Consensus 115 ~llG~~~v~ldl-~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~V 161 (429)
+||++.|+|+- ....+.+ ...|..+-....+..+...||||.+
T Consensus 82 -~iG~~~i~l~~l~~~~~~~---~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 82 -FLGQVSIPLNDLDEDKGRR---RTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred -eeEEEEEEHHHhhccCCCc---ccEEEECcCCCCCCccccceEEEEe
Confidence 89999999963 2122332 4689999532223445678999976
No 7
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=86.92 E-value=12 Score=31.50 Aligned_cols=106 Identities=13% Similarity=0.063 Sum_probs=60.2
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
++-+||+|.+++ +.|+..-..+.. ...|.= +-...|.+.+ ....|.|.||.-... +..
T Consensus 17 ~~dpyv~v~~~~-~~~~~kT~v~~~-t~nP~W-ne~f~f~~~~--------------~~~~l~~~v~d~~~~-----~~~ 74 (126)
T cd08678 17 SSNPYCVLEMDE-PPQKYQSSTQKN-TSNPFW-DEHFLFELSP--------------NSKELLFEVYDNGKK-----SDS 74 (126)
T ss_pred CcCCEEEEEECC-CCcEEEeEEEec-CCCCcc-CceEEEEeCC--------------CCCEEEEEEEECCCC-----CCC
Confidence 345699999974 222222223322 234431 1122454431 124799999985542 123
Q ss_pred ceeEEEEEEeecC-CCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCCC
Q 014188 114 RHQIGTFKLEVGP-EWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDP 167 (429)
Q Consensus 114 r~llG~~~v~ldl-~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpDP 167 (429)
+ +||+++++|+- ..... ...|..+-....++.+...+||+.++.-++.
T Consensus 75 ~-~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 K-FLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred c-eEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 4 89999999973 32222 1468888543323445788999999876665
No 8
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=86.32 E-value=9.1 Score=34.69 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=59.7
Q ss_pred ceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEec--CCCcccccCC
Q 014188 36 PCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTG--RKGFHCGVGI 112 (429)
Q Consensus 36 pC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~G--r~G~~CGv~~ 112 (429)
..||+|.|.+-=+ +|..+. . +..|. --=.|+++ .+ +....|.|.||.- ..+. ..
T Consensus 28 ~~Y~~i~Ld~~~vaRT~v~~---~-~~nP~---W~E~F~f~-------~~-----~~~~~l~v~v~k~~~~~~~----~~ 84 (146)
T cd04013 28 RYYCELCLDKTLYARTTSKL---K-TDTLF---WGEHFEFS-------NL-----PPVSVITVNLYRESDKKKK----KD 84 (146)
T ss_pred CceEEEEECCEEEEEEEEEc---C-CCCCc---ceeeEEec-------CC-----CcccEEEEEEEEccCcccc----cc
Confidence 4699999999543 554442 1 12222 23357773 11 1235789999842 2211 12
Q ss_pred cceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCC-------CCCCcEEEEEEeec
Q 014188 113 KRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQET-------GKPGAELHLKVKLD 164 (429)
Q Consensus 113 ~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~-------~k~~aelHl~Vr~E 164 (429)
+.++||+|+||++-=. .+ ....+|..|=..+++. .+++++||+.+|..
T Consensus 85 ~~~~IG~V~Ip~~~l~-~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~ 139 (146)
T cd04013 85 KSQLIGTVNIPVTDVS-SR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ 139 (146)
T ss_pred CCcEEEEEEEEHHHhc-CC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence 4469999999996311 12 2368999994432222 34778999998854
No 9
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=83.99 E-value=18 Score=29.97 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
.+-+||+|.+.+-+.+...-..+. ....|.= +---.|.+... ....|+|.||.-.+- +
T Consensus 20 ~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~W-ne~f~f~i~~~-------------~~~~l~v~v~d~d~~-------~ 77 (119)
T cd04036 20 TPDCYVELWLPTASDEKKRTKTIK-NSINPVW-NETFEFRIQSQ-------------VKNVLELTVMDEDYV-------M 77 (119)
T ss_pred CCCcEEEEEEcCCCCccCccceec-CCCCCcc-ceEEEEEeCcc-------------cCCEEEEEEEECCCC-------C
Confidence 345799999976443222222231 1233431 11223444321 123699999995431 2
Q ss_pred ceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeec
Q 014188 114 RHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLD 164 (429)
Q Consensus 114 r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~E 164 (429)
..+||++.++|+- -..+. -+..|..+.+ ++..+||+.+.+|
T Consensus 78 ~~~iG~~~~~l~~-l~~g~---~~~~~~~L~~------~~~g~l~~~~~~~ 118 (119)
T cd04036 78 DDHLGTVLFDVSK-LKLGE---KVRVTFSLNP------QGKEELEVEFLLE 118 (119)
T ss_pred CcccEEEEEEHHH-CCCCC---cEEEEEECCC------CCCceEEEEEEee
Confidence 3389999999962 22222 3788999864 2345999998887
No 10
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=83.30 E-value=4.4 Score=36.06 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=58.6
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-.||+|+|.+--.+|.. +......|.= + -.|.+.-.+. ....|.|.||.-.. +....
T Consensus 21 sDPYV~v~l~~~~~kTk~---~~~~t~nP~W-N--E~F~f~v~~~-----------~~~~l~v~V~d~~~-----~~~dd 78 (150)
T cd04019 21 PEVFVKAQLGNQVLRTRP---SQTRNGNPSW-N--EELMFVAAEP-----------FEDHLILSVEDRVG-----PNKDE 78 (150)
T ss_pred CCeEEEEEECCEEeeeEe---ccCCCCCCcc-c--CcEEEEecCc-----------cCCeEEEEEEEecC-----CCCCC
Confidence 456999999983333332 2222233431 1 2244322111 11378888887432 11234
Q ss_pred eeEEEEEEeecCCCCCCcceEEeeceeecCCCCc-----CCCCCCcEEEEEEeec
Q 014188 115 HQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQ-----ETGKPGAELHLKVKLD 164 (429)
Q Consensus 115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~-----~~~k~~aelHl~Vr~E 164 (429)
+||+++|+|+--..+..+-...+.|..+-...+ +..|.+.+|||.+.+.
T Consensus 79 -~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 79 -PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred -eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 899999999621111122244789999965321 3446778999987654
No 11
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=82.14 E-value=14 Score=30.36 Aligned_cols=102 Identities=16% Similarity=0.278 Sum_probs=57.3
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
-.||+|++++...+|..+. ....|.= +-...|++.+ .....|+|.||....- +...
T Consensus 25 dPyv~v~~~~~~~kT~~~~----~t~~P~W-ne~f~~~~~~-------------~~~~~l~i~v~d~~~~-----~~~~- 80 (128)
T cd04024 25 DPYAILSVGAQRFKTQTIP----NTLNPKW-NYWCEFPIFS-------------AQNQLLKLILWDKDRF-----AGKD- 80 (128)
T ss_pred CCeEEEEECCEEEecceec----CCcCCcc-CCcEEEEecC-------------CCCCEEEEEEEECCCC-----CCCC-
Confidence 4599999987555554331 2233431 1123454432 1235899999986542 1223
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecCC-CCcCCCCCCcEEEEEEe
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGK-NKQETGKPGAELHLKVK 162 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk-~~~~~~k~~aelHl~Vr 162 (429)
+||+++++|+---..+. --.+..|+.+=. ...+..+..-+|||.+.
T Consensus 81 ~lG~~~i~l~~~~~~~~-~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK-TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc-cCccceeEEccCcccCccccccceEEEEEE
Confidence 89999999963211111 113578999843 22233446779999863
No 12
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=81.55 E-value=22 Score=29.43 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
+.-+||+|++.+. |+..-+.+......|.= +-.-.|++.+..| . .....|.|.||.-++. +..
T Consensus 20 ~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~W-ne~f~f~v~~~~~----~-----~~~~~l~~~v~d~~~~-----~~~ 82 (125)
T cd04051 20 KMKVYAVVWIDPS--HKQSTPVDRDGGTNPTW-NETLRFPLDERLL----Q-----QGRLALTIEVYCERPS-----LGD 82 (125)
T ss_pred CCceEEEEEECCC--cccccccccCCCCCCCC-CCEEEEEcChHhc----c-----cCccEEEEEEEECCCC-----CCC
Confidence 4568999999872 22222233222234431 2234566665554 1 2246899999986542 123
Q ss_pred ceeEEEEEEeec-C-CCCCCcceEEeeceeecCCCCcCCCCCCcEEEE
Q 014188 114 RHQIGTFKLEVG-P-EWGEGKPIILFNGWIGIGKNKQETGKPGAELHL 159 (429)
Q Consensus 114 r~llG~~~v~ld-l-~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl 159 (429)
+ +||.+.++|. + .....+. .++-.|..+-+. ++++..+||+
T Consensus 83 ~-~lG~~~i~l~~l~~~~~~~~-~~~~~~~~l~~~---~g~~~G~~~~ 125 (125)
T cd04051 83 K-LIGEVRVPLKDLLDGASPAG-ELRFLSYQLRRP---SGKPQGVLNF 125 (125)
T ss_pred C-cEEEEEEEHHHhhcccCCCC-cceeEEEEeECC---CCCcCeEEeC
Confidence 4 8999999995 3 2222111 357789888542 2567778885
No 13
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=81.14 E-value=13 Score=30.85 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=57.4
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
-.||+|.+.+...+|..+. ....|.= +-.-.|++.+. ....|+|.||.-.. ++...
T Consensus 22 DPyv~v~~~~~~~kT~v~~----~t~nP~W-ne~f~f~~~~~-------------~~~~l~~~v~d~~~-----~~~~~- 77 (123)
T cd04025 22 DPFVRVFYNGQTLETSVVK----KSCYPRW-NEVFEFELMEG-------------ADSPLSVEVWDWDL-----VSKND- 77 (123)
T ss_pred CceEEEEECCEEEeceeec----CCCCCcc-CcEEEEEcCCC-------------CCCEEEEEEEECCC-----CCCCc-
Confidence 4599999988666665442 1223321 11233554431 13579999998543 12234
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecCCC---CcCCCCCCcEEEEEEe
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGKN---KQETGKPGAELHLKVK 162 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~---~~~~~k~~aelHl~Vr 162 (429)
+||.+.++|+-- ..+.. +.+|..+-.. +.+.++..-+|++.||
T Consensus 78 ~iG~~~~~l~~l-~~~~~---~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 78 FLGKVVFSIQTL-QQAKQ---EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EeEEEEEEHHHc-ccCCC---CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 899999998621 11211 4789988542 2234456778998875
No 14
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=80.50 E-value=7.8 Score=34.62 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=60.3
Q ss_pred CCCceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccC
Q 014188 33 FSSPCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVG 111 (429)
Q Consensus 33 ssspC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~ 111 (429)
-++-+||+|+|.+-.. +|..+ . .+..|.=+ -.|++.-. .. ...|+|.||.-..-
T Consensus 56 g~sDPYv~V~l~~~~~~rT~v~---~-~~~nP~Wn---E~F~~~~~------~~------~~~l~~~V~d~d~~------ 110 (158)
T cd04015 56 ITSDPYATVDLAGARVARTRVI---E-NSENPVWN---ESFHIYCA------HY------ASHVEFTVKDNDVV------ 110 (158)
T ss_pred CCcCeEEEEEECCeEeeEEEEe---C-CCCCCccc---eEEEEEcc------CC------CCEEEEEEEeCCCc------
Confidence 3467899999998654 44433 2 22345411 13443211 11 13689999986531
Q ss_pred CcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188 112 IKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK 162 (429)
Q Consensus 112 ~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr 162 (429)
+..+||++.++|+-- ..+.+ .+.|+.+=...++.-+.+++|||.++
T Consensus 111 -~~~~IG~~~i~l~~l-~~g~~---~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 111 -GAQLIGRAYIPVEDL-LSGEP---VEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred -CCcEEEEEEEEhHHc-cCCCC---cceEEECcCCCCCCCCCCCEEEEEEE
Confidence 124899999999731 12322 47999985433344467899999987
No 15
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.42 E-value=36 Score=28.46 Aligned_cols=104 Identities=25% Similarity=0.282 Sum_probs=59.6
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
-.||+|.+++.+.+|..+ .....|.= +---.|.++... .....|+|.||.=++. +...
T Consensus 16 Dpyv~v~~~~~~~kT~v~----~~~~nP~W-ne~f~f~~~~~~-----------~~~~~l~~~v~d~~~~-----~~d~- 73 (127)
T cd08373 16 DRIAKVTFRGVKKKTRVL----ENELNPVW-NETFEWPLAGSP-----------DPDESLEIVVKDYEKV-----GRNR- 73 (127)
T ss_pred CCEEEEEECCEeeeccee----CCCcCCcc-cceEEEEeCCCc-----------CCCCEEEEEEEECCCC-----CCCc-
Confidence 359999999987776643 22233431 112334443211 1235799999984432 1234
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe-ecCCC
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK-LDPDP 167 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr-~EpDP 167 (429)
+||.+.++|+---..+ -...|..+=..+ +.+.+.+|||.+. .++|.
T Consensus 74 ~iG~~~~~l~~l~~~~----~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 74 LIGSATVSLQDLVSEG----LLEVTEPLLDSN--GRPTGATISLEVSYQPPDG 120 (127)
T ss_pred eEEEEEEEhhHcccCC----ceEEEEeCcCCC--CCcccEEEEEEEEEeCCCC
Confidence 8999999996211111 256788883211 2234679999998 55554
No 16
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=78.61 E-value=24 Score=30.90 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
++-+||+|++++--.+|..++ .+..|.= --.|++.-. .. ...|+|.||.-+.-..=+-..+
T Consensus 23 ~sDPYv~i~~g~~~~rTk~~~----~~~nP~W---nE~f~f~v~------~~------~~~l~v~V~d~d~~~~~~~~~~ 83 (126)
T cd08379 23 STDAYCVAKYGPKWVRTRTVE----DSSNPRW---NEQYTWPVY------DP------CTVLTVGVFDNSQSHWKEAVQP 83 (126)
T ss_pred CCCeeEEEEECCEEeEcCccc----CCCCCcc---eeEEEEEec------CC------CCEEEEEEEECCCccccccCCC
Confidence 456799999988666665553 2233331 223444221 11 2379999999654110000013
Q ss_pred ceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEE
Q 014188 114 RHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHL 159 (429)
Q Consensus 114 r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl 159 (429)
..+||+++|+|.---. +. -++.|..+-..+.++.|...+||+
T Consensus 84 dd~lG~~~i~l~~l~~-~~---~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 84 DVLIGKVRIRLSTLED-DR---VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CceEEEEEEEHHHccC-CC---EEeeEEEeEeCCCCCccCCcEEEe
Confidence 3489999999863211 21 267899986433334567889986
No 17
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=77.60 E-value=37 Score=29.47 Aligned_cols=98 Identities=12% Similarity=0.186 Sum_probs=57.7
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
--||+|+|++-=.+| ..+......|. --..|+++-+ . ....|.|.||.-+.- +...
T Consensus 23 DPYv~i~lg~~~~kT---~v~~~~~~nP~---WNe~F~f~v~-------~-----~~~~l~~~V~d~d~~-----~~dd- 78 (121)
T cd04016 23 DPYCRIRVGHAVYET---PTAYNGAKNPR---WNKTIQCTLP-------E-----GVDSIYIEIFDERAF-----TMDE- 78 (121)
T ss_pred CceEEEEECCEEEEe---EEccCCCCCCc---cCeEEEEEec-------C-----CCcEEEEEEEeCCCC-----cCCc-
Confidence 349999998832333 23322233443 2245665311 1 124799999986642 2234
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK 162 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr 162 (429)
+||.++|+|...-.++.+ -+.|..+-+. ++.+..-++||...
T Consensus 79 ~iG~~~i~l~~~~~~g~~---~~~W~~L~~~--~~~~~~g~i~l~l~ 120 (121)
T cd04016 79 RIAWTHITIPESVFNGET---LDDWYSLSGK--QGEDKEGMINLVFS 120 (121)
T ss_pred eEEEEEEECchhccCCCC---ccccEeCcCc--cCCCCceEEEEEEe
Confidence 899999999643444543 4999999542 12234569999864
No 18
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=72.73 E-value=53 Score=27.14 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=56.5
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-+||+|.+.+-+.+...-..+.. ...|.= +-.-.|++.+. ....|+|.||..... + ..
T Consensus 22 ~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~W-ne~f~f~i~~~-------------~~~~L~i~v~d~d~~-----~-~~ 80 (126)
T cd04043 22 SDPYVTLVDTNGKRRIAKTRTIYD-TLNPRW-DEEFELEVPAG-------------EPLWISATVWDRSFV-----G-KH 80 (126)
T ss_pred CCceEEEEECCCCeeeecccEecC-CCCCcc-cceEEEEcCCC-------------CCCEEEEEEEECCCC-----C-CC
Confidence 346999998764333222222322 234431 11234555431 135899999986542 1 23
Q ss_pred eeEEEEEEeecCCCC-C-CcceEEeeceeecCCCCcCCCCCCcEEEEEEeecC
Q 014188 115 HQIGTFKLEVGPEWG-E-GKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDP 165 (429)
Q Consensus 115 ~llG~~~v~ldl~~a-e-~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~Ep 165 (429)
.+||+++++|+.... + +. -+.-|+.+-. ..++||.+.+|-
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~---~~~~w~~l~~--------~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGL---PREIWLDLDT--------QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCC---CceEEEEcCC--------CCeEEEEEEEee
Confidence 389999999974222 1 22 2677999953 248899987763
No 19
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=70.69 E-value=29 Score=29.31 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=58.3
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
-.||+|.+.+-..+|.. + .....|.=. -.-.|++. . ....|+|.||.-++. + ..
T Consensus 25 dPyv~v~~~~~~~kT~v---~-~~t~nP~Wn-e~f~f~~~---------~-----~~~~l~i~V~d~~~~-----~-d~- 78 (126)
T cd04046 25 DPYVIIKCEGESVRSPV---Q-KDTLSPEFD-TQAIFYRK---------K-----PRSPIKIQVWNSNLL-----C-DE- 78 (126)
T ss_pred CccEEEEECCEEEEeCc---c-CCCCCCccc-ceEEEEec---------C-----CCCEEEEEEEECCCC-----C-CC-
Confidence 35999999886554432 3 222344311 12234432 1 135899999985431 1 24
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecCC-CCcCCCCCCcEEEEEEeecCCC
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGK-NKQETGKPGAELHLKVKLDPDP 167 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk-~~~~~~k~~aelHl~Vr~EpDP 167 (429)
.||.++++++.. .... - -|..+=+ .+.++++..-+|++.|.+.+||
T Consensus 79 ~lG~~~~~l~~~-~~~~---~--~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 79 FLGQATLSADPN-DSQT---L--RTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred ceEEEEEecccC-CCcC---c--eEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 899999999742 1111 1 2334412 2234556778999999999998
No 20
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=69.21 E-value=60 Score=26.30 Aligned_cols=93 Identities=17% Similarity=0.342 Sum_probs=54.1
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-.||+|++++-..||.. + .....|.=.. .-.|++.+ .....|+|.||.-... ...
T Consensus 28 ~dPyv~v~~~~~~~kT~~---~-~~t~~P~W~e-~f~~~v~~-------------~~~~~l~i~v~d~~~~------~~~ 83 (121)
T cd08391 28 SDPYVIVRVGAQTFKSKV---I-KENLNPKWNE-VYEAVVDE-------------VPGQELEIELFDEDPD------KDD 83 (121)
T ss_pred cCCEEEEEECCEeEEccc---c-CCCCCCcccc-eEEEEeCC-------------CCCCEEEEEEEecCCC------CCC
Confidence 446999999984445543 3 2233444111 12333321 1235899999986542 223
Q ss_pred eeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188 115 HQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK 162 (429)
Q Consensus 115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr 162 (429)
+||++.++|+---..+ .++.|+.+=.. ...++||.++
T Consensus 84 -~iG~~~i~l~~l~~~~----~~~~w~~L~~~------~~G~~~~~~~ 120 (121)
T cd08391 84 -FLGRLSIDLGSVEKKG----FIDEWLPLEDV------KSGRLHLKLE 120 (121)
T ss_pred -cEEEEEEEHHHhcccC----ccceEEECcCC------CCceEEEEEe
Confidence 8999999986222222 26899998321 3458999864
No 21
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=66.04 E-value=39 Score=27.75 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=50.2
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-+||++.+.+-..+|..+ .....|.=.+--..|.+...+|. ...|+|.||.-... +...
T Consensus 21 ~Dpyv~v~~~~~~~kT~v~----~~~~nP~W~ne~f~f~i~~~~l~-----------~~~l~i~V~d~d~~-----~~~~ 80 (110)
T cd08688 21 TDAFVEVKFGSTTYKTDVV----KKSLNPVWNSEWFRFEVDDEELQ-----------DEPLQIRVMDHDTY-----SAND 80 (110)
T ss_pred CCceEEEEECCeeEeccee----cCCCCCcccCcEEEEEcChHHcC-----------CCeEEEEEEeCCCC-----CCCC
Confidence 3469999998844455433 12234432112245666665531 24899999996542 1223
Q ss_pred eeEEEEEEeecCCCCCCcceEEeeceeec
Q 014188 115 HQIGTFKLEVGPEWGEGKPIILFNGWIGI 143 (429)
Q Consensus 115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~i 143 (429)
+||++.++|+--...+ +-.-.++|..|
T Consensus 81 -~iG~~~~~l~~l~~~~-~~~~~~~w~~l 107 (110)
T cd08688 81 -AIGKVYIDLNPLLLKD-SVSQISGWFPI 107 (110)
T ss_pred -ceEEEEEeHHHhcccC-CccccCCeEEc
Confidence 8999999997322211 11228899875
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=62.96 E-value=30 Score=29.30 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=57.8
Q ss_pred CceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 35 SPCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 35 spC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
+-.||+|.|++-.. +|.. + .....|.= +-.-.|++.+. ...|.|.||....- + .
T Consensus 22 sDpYv~v~l~~~~~~kT~v---~-~kt~~P~W-nE~F~f~v~~~--------------~~~l~~~v~d~~~~-----~-~ 76 (121)
T cd08401 22 RDCYCTVNLDQEEVFRTKT---V-EKSLCPFF-GEDFYFEIPRT--------------FRHLSFYIYDRDVL-----R-R 76 (121)
T ss_pred cCcEEEEEECCccEEEeeE---E-ECCCCCcc-CCeEEEEcCCC--------------CCEEEEEEEECCCC-----C-C
Confidence 45699999986543 4432 2 11233331 22334454421 13799999987642 1 2
Q ss_pred ceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEee
Q 014188 114 RHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKL 163 (429)
Q Consensus 114 r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~ 163 (429)
..+||++.++|+- ...+.. ..+|..+-... ..++...++||.+|+
T Consensus 77 ~~~iG~~~i~l~~-l~~~~~---~~~w~~L~~~~-~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVAIKKED-LHKYYG---KDTWFPLQPVD-ADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEEEEHHH-ccCCCC---cEeeEEEEccC-CCCcccEEEEEEEEC
Confidence 3489999999862 111221 47999996532 222357799999874
No 23
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=60.17 E-value=47 Score=27.51 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=39.9
Q ss_pred ceEEEEEEecCCCcccccCCcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecC
Q 014188 93 AYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDP 165 (429)
Q Consensus 93 ~~L~v~Vy~Gr~G~~CGv~~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~Ep 165 (429)
..|+|.||.-... +... .||.+.++|. +...+++ +..|+.+-..+ +.+...+|||.|+.-|
T Consensus 61 ~~l~~~v~D~d~~-----~~~~-~iG~~~~~l~-~l~~~~~---~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 61 QPLYIKVFDYDRG-----LTDD-FMGSAFVDLS-TLELNKP---TEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred CeEEEEEEeCCCC-----CCCc-ceEEEEEEHH-HcCCCCC---eEEEEECCCCC--CccCceEEEEEEEECC
Confidence 4799999985442 1223 8999999996 2222333 55688883211 1245679999998765
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=57.71 E-value=1e+02 Score=25.12 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=54.0
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-.||+|.+++.-.+|.. +......|.= +-...|++... ....|+|.||.-++. + ..
T Consensus 22 ~dpyv~v~~~~~~~kT~~---~~~~~~nP~W-ne~f~f~v~~~-------------~~~~l~i~v~d~~~~-----~-~~ 78 (118)
T cd08681 22 QDPYCVLRIGGVTKKTKT---DFRGGQHPEW-DEELRFEITED-------------KKPILKVAVFDDDKR-----K-PD 78 (118)
T ss_pred CCceEEEEECCCcccccc---ccCCCCCCcc-CceEEEEecCC-------------CCCEEEEEEEeCCCC-----C-Cc
Confidence 456999999883333332 2122234431 11234555431 235899999985431 1 34
Q ss_pred eeEEEEEEeecC-CCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188 115 HQIGTFKLEVGP-EWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK 162 (429)
Q Consensus 115 ~llG~~~v~ldl-~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr 162 (429)
+||++.++++- .... -+..|..+-++. +..-||||.+.
T Consensus 79 -~iG~~~~~l~~~~~~~-----~~~~w~~L~~~~----~~~G~i~l~l~ 117 (118)
T cd08681 79 -LIGDTEVDLSPALKEG-----EFDDWYELTLKG----RYAGEVYLELT 117 (118)
T ss_pred -ceEEEEEecHHHhhcC-----CCCCcEEeccCC----cEeeEEEEEEE
Confidence 89999999972 2211 157899884322 34458888763
No 25
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=56.71 E-value=3.7 Score=32.27 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=12.0
Q ss_pred ccccchhhhhccCC
Q 014188 285 QPWGKLEAWRERGI 298 (429)
Q Consensus 285 kPWGRLEAWRErG~ 298 (429)
.||.|-||||-.+.
T Consensus 3 DPW~RneaWRy~~~ 16 (57)
T PF08122_consen 3 DPWARNEAWRYHPQ 16 (57)
T ss_pred ChHhhhHHHhCCcc
Confidence 49999999999764
No 26
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=56.22 E-value=1.2e+02 Score=25.97 Aligned_cols=105 Identities=13% Similarity=0.141 Sum_probs=56.5
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHH----HHhhCCCCCCCCCceEEEEEEecCCCcccccC
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDL----KALLTPGCFYSPHAYLEVVVFTGRKGFHCGVG 111 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l----~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~ 111 (429)
-.||+|.+.+...+|..+ .....|. ---.|.++...+ +.+.. ....|.|.||.=.+- +
T Consensus 23 dpyv~v~~~~~~~kT~v~----~~t~nP~---Wne~~~f~~~~~~~~~~~~~~------~~~~l~v~V~d~d~~-----~ 84 (135)
T cd04017 23 DPFARVSFLNQSQETEVI----KETLSPT---WDQTLIFDEVELYGSPEEIAQ------NPPLVVVELFDQDSV-----G 84 (135)
T ss_pred CCEEEEEECCeeeEeeeE----cCCCCCc---cCcEEEEeeeeccCChHHhhc------CCCEEEEEEEeCcCC-----C
Confidence 359999998876666644 2223343 112233321111 11221 135789999974431 2
Q ss_pred CcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEee
Q 014188 112 IKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKL 163 (429)
Q Consensus 112 ~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~ 163 (429)
... +||++.+..........+---+.-|..+-+.. +...||+|.+.+
T Consensus 85 ~d~-~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~----~~~Geil~~~~~ 131 (135)
T cd04017 85 KDE-FLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG----QSAGELLAAFEL 131 (135)
T ss_pred CCc-cceEEEeeeeeecccCCCCCCCceEEEeecCC----CchhheeEEeEE
Confidence 234 89999973211111111233477899996532 356699998765
No 27
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=55.69 E-value=79 Score=25.85 Aligned_cols=86 Identities=17% Similarity=0.357 Sum_probs=47.3
Q ss_pred eeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHH-HHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 37 CLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESD-LKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 37 C~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~-l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
.||+|++.+-..+|..+. ....|.= =-.|+++... -..|.. ..|+|.||.-++ ++..+
T Consensus 23 pyv~v~~~~~~~kT~~~~----~t~nP~w---ne~f~f~~~~~~~~l~~--------~~l~i~V~d~~~-----~~~~~- 81 (111)
T cd04011 23 PVVKVEVGGQKKYTSVKK----GTNCPFY---NEYFFFNFHESPDELFD--------KIIKISVYDSRS-----LRSDT- 81 (111)
T ss_pred CEEEEEECCEeeeeeEEe----ccCCCcc---ccEEEEecCCCHHHHhc--------CeEEEEEEcCcc-----cccCC-
Confidence 499999998665554331 1123321 1234433211 122222 389999998543 12234
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecC
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIG 144 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iG 144 (429)
+||.++++|.-=-.. ..--+...|+.+.
T Consensus 82 ~iG~~~i~l~~v~~~-~~~~~~~~w~~L~ 109 (111)
T cd04011 82 LIGSFKLDVGTVYDQ-PDHAFLRKWLLLT 109 (111)
T ss_pred ccEEEEECCccccCC-CCCcceEEEEEee
Confidence 899999999622111 1124778898763
No 28
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=49.62 E-value=91 Score=26.30 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=55.0
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-.||+|+|++-...++. +.. ....|.= +---.|++. . ...|+|.||.-.. +....
T Consensus 35 ~dpyv~v~~~~~~~~kT~--~~~-~t~~P~W-ne~f~~~v~---------~------~~~l~~~v~d~~~-----~~~~~ 90 (132)
T cd04014 35 LDPYVSIDVDDTHIGKTS--TKP-KTNSPVW-NEEFTTEVH---------N------GRNLELTVFHDAA-----IGPDD 90 (132)
T ss_pred cCcEEEEEECCEEEeEEe--EcC-CCCCCCc-ceeEEEEcC---------C------CCEEEEEEEeCCC-----CCCCc
Confidence 345999999975432222 221 2233331 112234443 1 2479999997543 12234
Q ss_pred eeEEEEEEeec-CCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecC
Q 014188 115 HQIGTFKLEVG-PEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDP 165 (429)
Q Consensus 115 ~llG~~~v~ld-l~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~Ep 165 (429)
+||++.|+|+ +....+.. +..|+.+- +..++||.++.+.
T Consensus 91 -~iG~~~i~l~~l~~~~~~~---~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 91 -FVANCTISFEDLIQRGSGS---FDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred -eEEEEEEEhHHhcccCCCc---ccEEEEcc--------CCcEEEEEEEEec
Confidence 8999999996 33221221 58899984 3359999998764
No 29
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=49.52 E-value=20 Score=37.69 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=35.5
Q ss_pred cceEEeeceeecCCCCcCCCCCCcEEEEEEeecCCCceEEEeCCcccc
Q 014188 132 KPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTML 179 (429)
Q Consensus 132 kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpDPRyVFQFdgepec 179 (429)
-.++++++|+.+|-....+=+|..+.-.+=|+++| -|.+|||||+.
T Consensus 187 avi~l~~t~l~f~~~~~~g~~Pt~~~~~VTka~~~--vV~EiDgePA~ 232 (379)
T COG3287 187 AVILLFGTQLKFGHGFAHGFVPTDKTGVVTKADGD--VVYEIDGEPAA 232 (379)
T ss_pred eEEEEecceEEeecccccceEEccceEEEEeecCc--EEEEeCCCcHH
Confidence 45788999999986433344577777777788888 89999999974
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=48.25 E-value=1.6e+02 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=27.4
Q ss_pred ceEEEEEEecCCCcccccCCcceeEEEEEEeec-CCCCCCcceEEeeceeecC
Q 014188 93 AYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVG-PEWGEGKPIILFNGWIGIG 144 (429)
Q Consensus 93 ~~L~v~Vy~Gr~G~~CGv~~~r~llG~~~v~ld-l~~ae~kp~v~h~GWi~iG 144 (429)
..|+|.||.=.+. ...++||.+.|+|. +...+. ..+|..+|
T Consensus 81 ~~L~~~V~d~d~~------~~~~~lG~~~i~l~~l~~~~~-----~~~W~~L~ 122 (122)
T cd08381 81 RVLQVSVWSHDSL------VENEFLGGVCIPLKKLDLSQE-----TEKWYPLG 122 (122)
T ss_pred CEEEEEEEeCCCC------cCCcEEEEEEEeccccccCCC-----ccceEECc
Confidence 4899999984332 23348999999995 332221 47898876
No 31
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=47.52 E-value=61 Score=27.05 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=41.3
Q ss_pred ceEEEEEEecCCCcccccCCcceeEEEEEEeecC-CCC-CCcceEEeeceeecCCCCcCCCCCCcEEEEEEee
Q 014188 93 AYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGP-EWG-EGKPIILFNGWIGIGKNKQETGKPGAELHLKVKL 163 (429)
Q Consensus 93 ~~L~v~Vy~Gr~G~~CGv~~~r~llG~~~v~ldl-~~a-e~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~ 163 (429)
..|.|.||.-..- +... +||.+.++++- ... ...-...|..|..+-+.. +.++...||||.|..
T Consensus 67 ~~l~~~v~d~~~~-----~~~~-~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~G~l~~~~~~ 132 (133)
T cd04033 67 HRLLFEVFDENRL-----TRDD-FLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS-SKSRVKGHLRLYMAY 132 (133)
T ss_pred CEEEEEEEECCCC-----CCCC-eeEEEEEEHHHCCCcCccccccccchheeeeecC-CCCcceeEEEEEEee
Confidence 3689999975431 2224 89999999862 221 111135688999886532 344678899999863
No 32
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=39.49 E-value=2.1e+02 Score=23.25 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=48.0
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+-.||+|+|++ |+..-+.+ .....|.= +-...|++... ....|+|.||.-+. .+
T Consensus 21 ~dpyv~v~~~~---~~~kT~v~-~~t~nP~W-ne~f~f~v~~~-------------~~~~l~v~v~d~~~--------~~ 74 (105)
T cd04050 21 PSPYVELTVGK---TTQKSKVK-ERTNNPVW-EEGFTFLVRNP-------------ENQELEIEVKDDKT--------GK 74 (105)
T ss_pred CCcEEEEEECC---EEEeCccc-cCCCCCcc-cceEEEEeCCC-------------CCCEEEEEEEECCC--------CC
Confidence 45699999998 33333344 22344431 22344555321 12479999998543 34
Q ss_pred eeEEEEEEeec-CCCCCCcceEEeeceeecCC
Q 014188 115 HQIGTFKLEVG-PEWGEGKPIILFNGWIGIGK 145 (429)
Q Consensus 115 ~llG~~~v~ld-l~~ae~kp~v~h~GWi~iGk 145 (429)
+||++.++|+ +... +-...+.|..+-+
T Consensus 75 -~iG~~~i~l~~l~~~---~~~~~~~w~~L~~ 102 (105)
T cd04050 75 -SLGSLTLPLSELLKE---PDLTLDQPFPLDN 102 (105)
T ss_pred -ccEEEEEEHHHhhcc---ccceeeeeEecCC
Confidence 8999999996 2211 2344799999843
No 33
>PLN03008 Phospholipase D delta
Probab=37.76 E-value=81 Score=36.69 Aligned_cols=108 Identities=21% Similarity=0.306 Sum_probs=68.2
Q ss_pred cCCCceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCccccc
Q 014188 32 AFSSPCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGV 110 (429)
Q Consensus 32 pssspC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv 110 (429)
..+|--|.+|.|.+--+ +|.. + ..+..|. ---.|++.-++ + ...|++.||.-..-
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrV---i-~n~~NPv---WNE~F~f~vah------~------~s~L~f~VkD~D~~----- 129 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRV---L-KNSQEPL---WDEKFNISIAH------P------FAYLEFQVKDDDVF----- 129 (868)
T ss_pred cCCCCceEEEEECCcceeeEEe---C-CCCCCCC---cceeEEEEecC------C------CceEEEEEEcCCcc-----
Confidence 45678899999977433 3332 2 2223443 23456665443 1 24799999995442
Q ss_pred CCcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe---ecCCCce
Q 014188 111 GIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK---LDPDPRY 169 (429)
Q Consensus 111 ~~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr---~EpDPRy 169 (429)
+ .++||++.|||.- -..|.. -++|..|=+..++..|++++||+.++ ++-||-|
T Consensus 130 g--aD~IG~a~IPL~~-L~~Ge~---vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~ 185 (868)
T PLN03008 130 G--AQIIGTAKIPVRD-IASGER---ISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSY 185 (868)
T ss_pred C--CceeEEEEEEHHH-cCCCCc---eEEEEEccccCCCCCCCCcEEEEEEEEEEccccccc
Confidence 2 2489999999962 222332 37999996655556678999999965 4556654
No 34
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=34.63 E-value=25 Score=34.24 Aligned_cols=59 Identities=29% Similarity=0.572 Sum_probs=33.9
Q ss_pred CceEEEEeeCCCCCCCcccccchhhhhccCCCCceee-EEEEeecCC------ccceeEeee-eeeecccCceeEEec
Q 014188 268 PGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCC-RFHLLSEGQ------EAGEVLMSE-ILISAEKGGEFFIDT 337 (429)
Q Consensus 268 PGAWLIlRP~~~~~~sWkPWGRLEAWRErG~~d~lgy-RfeLl~d~~------~~~~v~~ae-s~is~~kGG~F~ID~ 337 (429)
|.+|+|-|=.+. |+|+||--.- .| |+ +|.+.+.+. +...+..++ +.+....||+....+
T Consensus 110 P~~miierS~D~--gtW~p~qYfA-------~~--C~~~f~~~~~~~~~~~~~~~~v~Ct~~yS~~~P~~~g~V~f~~ 176 (237)
T PF00055_consen 110 PAAMIIERSSDF--GTWQPWQYFA-------SD--CSRTFGMPPNGPPPKFANPDEVICTSRYSDIEPLTGGEVIFSL 176 (237)
T ss_dssp -SEEEEEEESST--TSEEEEEEEE-------SS--HHHHCS--BTTGGG-STSTT---EESTTTTSSSTSTTEEEEES
T ss_pred CCeEEEEEccCC--CceeEeHHhh-------cC--ChhhcCCcccccccccCCCCcCeecCcCCCCcCccccceeeee
Confidence 899999997554 5999986542 12 33 355554431 123445444 556777889987766
No 35
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=34.01 E-value=38 Score=27.93 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.2
Q ss_pred eEEEEeecCCccceeEeeee
Q 014188 304 CRFHLLSEGQEAGEVLMSEI 323 (429)
Q Consensus 304 yRfeLl~d~~~~~~v~~aes 323 (429)
||||+..+++....|++||+
T Consensus 4 Yr~Ev~~~~~~~~viv~Ae~ 23 (64)
T PF13046_consen 4 YRFEVTLEEGPIPVIVAAEN 23 (64)
T ss_pred EEEEEEecCCcEEEEEEecC
Confidence 99999998777788888885
No 36
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=33.51 E-value=2.6e+02 Score=22.56 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=51.3
Q ss_pred CceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 35 SPCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 35 spC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
+-.||+|++++... +|..+ .. ..|.= +-...|++...++ ...+|+|.||..+.. ...
T Consensus 18 ~dpyv~v~~~~~~~~kT~~~---~~--~~P~W-ne~f~f~v~~~~~-----------~~~~l~i~v~d~~~~-----~~~ 75 (117)
T cd08383 18 RDPYCTVSLDQVEVARTKTV---EK--LNPFW-GEEFVFDDPPPDV-----------TFFTLSFYNKDKRSK-----DRD 75 (117)
T ss_pred CCceEEEEECCEEeEecceE---EC--CCCcc-cceEEEecCCccc-----------cEEEEEEEEEecccC-----CCe
Confidence 34599999998653 44433 12 34431 1134566554322 124788888875421 111
Q ss_pred ceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188 114 RHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK 162 (429)
Q Consensus 114 r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr 162 (429)
. .+|++.|..... +. -...|..+-....+ .+...+|||.|+
T Consensus 76 ~-~~g~v~l~~~~~---~~---~~~~w~~L~~~~~~-~~~~G~l~l~~~ 116 (117)
T cd08383 76 I-VIGKVALSKLDL---GQ---GKDEWFPLTPVDPD-SEVQGSVRLRAR 116 (117)
T ss_pred e-EEEEEEecCcCC---CC---cceeEEECccCCCC-CCcCceEEEEEE
Confidence 2 456555443222 11 24799999543221 223459999885
No 37
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=33.42 E-value=1e+02 Score=25.48 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=54.7
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
+.+||+|++++.-.++..+ +.. ...|.= +-.-.|++.+ .....|+|.||.... + ...
T Consensus 13 ~dPYv~v~v~~~~~~kT~v--~~~-t~nP~W-ne~f~f~v~~-------------~~~~~l~i~v~d~~~-----~-~d~ 69 (111)
T cd04052 13 LSPYAELYLNGKLVYTTRV--KKK-TNNPSW-NASTEFLVTD-------------RRKSRVTVVVKDDRD-----R-HDP 69 (111)
T ss_pred CCceEEEEECCEEEEEEee--ecc-CCCCcc-CCceEEEecC-------------cCCCEEEEEEEECCC-----C-CCC
Confidence 3569999998854433333 212 234431 1111233321 123579999999764 1 234
Q ss_pred eeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeec
Q 014188 115 HQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLD 164 (429)
Q Consensus 115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~E 164 (429)
.||++.++|.---..+ - ....|..+-. ++..+|||.+.--
T Consensus 70 -~iG~~~v~L~~l~~~~--~-~~~~w~~L~~------~~~G~i~~~~~~~ 109 (111)
T cd04052 70 -VLGSVSISLNDLIDAT--S-VGQQWFPLSG------NGQGRIRISALWK 109 (111)
T ss_pred -eEEEEEecHHHHHhhh--h-ccceeEECCC------CCCCEEEEEEEEe
Confidence 8999999986211111 1 1579999853 2456999987643
No 38
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=32.81 E-value=1.4e+02 Score=24.94 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=55.6
Q ss_pred CceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188 35 SPCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK 113 (429)
Q Consensus 35 spC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~ 113 (429)
+-.||+|++++... +|..+ .....|.= +-...|++.. ....|+|.||....- +..
T Consensus 21 ~DPYv~v~~~~~~~~kT~v~----~~t~nP~W-ne~f~~~~~~--------------~~~~l~v~v~d~~~~-----~~d 76 (121)
T cd04054 21 SDPYCIVKVDNEVIIRTATV----WKTLNPFW-GEEYTVHLPP--------------GFHTVSFYVLDEDTL-----SRD 76 (121)
T ss_pred CCceEEEEECCEeeeeeeeE----cCCCCCcc-cceEEEeeCC--------------CCCEEEEEEEECCCC-----CCC
Confidence 34599999988654 44432 22334441 1123333321 124788999986541 122
Q ss_pred ceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEee
Q 014188 114 RHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKL 163 (429)
Q Consensus 114 r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~ 163 (429)
. +||++.++++.--..++. ...|+.+=... .+.+..-++||.|++
T Consensus 77 ~-~iG~~~~~~~~~~~~~~~---~~~W~~L~~~~-~~~~~~G~i~l~~~~ 121 (121)
T cd04054 77 D-VIGKVSLTREVISAHPRG---IDGWMNLTEVD-PDEEVQGEIHLELSV 121 (121)
T ss_pred C-EEEEEEEcHHHhccCCCC---CCcEEECeeeC-CCCccccEEEEEEEC
Confidence 3 899999998632122221 46899983211 112245599999874
No 39
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=28.66 E-value=36 Score=31.32 Aligned_cols=53 Identities=30% Similarity=0.500 Sum_probs=41.1
Q ss_pred EEecCCCChhhhhhhccccccCCCCCcccccCCceEEEEeeCCCCCCCcc-cccchh
Q 014188 236 KIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQ-PWGKLE 291 (429)
Q Consensus 236 tIHDLSGSpVAaAsMvTPFVPSpGsdrVsRSNPGAWLIlRP~~~~~~sWk-PWGRLE 291 (429)
+.+|.-|-+|-+.+=-+||+..||.--|-=-+.+-||+++-.. ..|. |.|++|
T Consensus 2 ~f~d~~~~~v~l~~~~~~~~~~~~~V~ii~~~~~~~LL~~~~~---~~~elPgG~vE 55 (156)
T TIGR02705 2 KFIDYYGNKVTLAFEKEPFSPNPNHVLVIPRYKDQWLLTEHKR---RGLEFPGGKVE 55 (156)
T ss_pred eeEcCCCCEEEEEEeCCcccCCCCEEEEEEEECCEEEEEEEcC---CcEECCceecC
Confidence 5689999999999999999999998766533556899988653 3354 777776
No 40
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=28.61 E-value=2.6e+02 Score=22.69 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=54.0
Q ss_pred ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188 36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH 115 (429)
Q Consensus 36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~ 115 (429)
-.||+|++++...+|..+ .....|.= +-.-.|++.+ .....|+|.||.-+.- +...
T Consensus 22 dPyv~v~~~~~~~kT~v~----~~t~nP~W-ne~f~f~~~~-------------~~~~~l~v~v~d~~~~-----~~~~- 77 (116)
T cd08376 22 DPYVKFRLGNEKYKSKVC----SKTLNPQW-LEQFDLHLFD-------------DQSQILEIEVWDKDTG-----KKDE- 77 (116)
T ss_pred CcEEEEEECCEeEecccc----cCCCCCce-eEEEEEEecC-------------CCCCEEEEEEEECCCC-----CCCC-
Confidence 359999998855555432 12233331 1122344331 1235899999986542 2233
Q ss_pred eEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEee
Q 014188 116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKL 163 (429)
Q Consensus 116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~ 163 (429)
+||++.++|+- -..++ -|.-|..+..+ +.+|||.+..
T Consensus 78 ~iG~~~~~l~~-l~~~~---~~~~w~~L~~~-------~G~~~~~~~~ 114 (116)
T cd08376 78 FIGRCEIDLSA-LPREQ---THSLELELEDG-------EGSLLLLLTL 114 (116)
T ss_pred eEEEEEEeHHH-CCCCC---ceEEEEEccCC-------CcEEEEEEEe
Confidence 89999999862 11222 37889998643 2588887653
No 41
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=26.86 E-value=4.8e+02 Score=27.19 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=72.1
Q ss_pred CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188 35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR 114 (429)
Q Consensus 35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r 114 (429)
.|-.++-+|++--.+|.++|=.. .|.- +.=-++-+|+..|+++-.. ..-+|+..|+-.. ....|
T Consensus 18 ~~~vv~a~~ng~~l~TDpv~~~~----~p~f-~teL~WE~Dr~~l~~~r~~------~tPiKl~c~a~~~-----~~~~r 81 (340)
T PF12416_consen 18 HPIVVEAKFNGESLETDPVPHTE----SPQF-NTELAWECDRKALKQHRLQ------RTPIKLQCFAVDG-----STGKR 81 (340)
T ss_pred ccEEEEEEeCCceeeecCCCCCC----Ccee-ecceeeeccHHHHHHhhcc------CCceEEEEEEecC-----CCCcc
Confidence 35688999999988888554332 2221 2234588999999998765 5678999998652 23456
Q ss_pred eeEEEEEEeecCCCC---CCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCC
Q 014188 115 HQIGTFKLEVGPEWG---EGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPD 166 (429)
Q Consensus 115 ~llG~~~v~ldl~~a---e~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpD 166 (429)
..+|-+-++|- .+ ..++...-.=|-.+=..+.+-.+-..||-|.+.+|.|
T Consensus 82 e~iGyv~LdLR--sa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 82 ESIGYVVLDLR--SAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred eeccEEEEEcc--ccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 68999887664 44 4443345566888732211223344566666666655
No 42
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=26.84 E-value=2.1e+02 Score=23.28 Aligned_cols=97 Identities=13% Similarity=0.140 Sum_probs=53.2
Q ss_pred CceeEEEecCC-CC-cceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCC
Q 014188 35 SPCLCEIRLRG-FP-VQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGI 112 (429)
Q Consensus 35 spC~C~IrL~~-fP-~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~ 112 (429)
+-.||+|++.+ .+ .+|..+ .....|.= +-...|.+. .. ...|+|.||.-+.. +.
T Consensus 24 ~dpyv~v~~~~~~~~~kT~~~----~~~~~P~W-ne~~~~~v~--------~~------~~~l~~~v~d~~~~-----~~ 79 (124)
T cd04044 24 VDPYVTFSISNRRELARTKVK----KDTSNPVW-NETKYILVN--------SL------TEPLNLTVYDFNDK-----RK 79 (124)
T ss_pred CCCeEEEEECCCCcceEeeee----cCCCCCcc-eEEEEEEeC--------CC------CCEEEEEEEecCCC-----CC
Confidence 45699999998 34 355443 22334431 112234433 11 24788999985432 22
Q ss_pred cceeEEEEEEeec-CCCCCCcceEEeec-eeecCCCCcCCCCCCcEEEEEEeecC
Q 014188 113 KRHQIGTFKLEVG-PEWGEGKPIILFNG-WIGIGKNKQETGKPGAELHLKVKLDP 165 (429)
Q Consensus 113 ~r~llG~~~v~ld-l~~ae~kp~v~h~G-Wi~iGk~~~~~~k~~aelHl~Vr~Ep 165 (429)
.. +||+++++|+ +..... +.. |..+-+ ++|+.-+||+.++.-|
T Consensus 80 d~-~iG~~~~~l~~l~~~~~-----~~~~~~~~~~----~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DK-LIGTAEFDLSSLLQNPE-----QENLTKNLLR----NGKPVGELNYDLRFFP 124 (124)
T ss_pred Cc-eeEEEEEEHHHhccCcc-----ccCcchhhhc----CCccceEEEEEEEeCC
Confidence 34 8999999986 332222 122 333322 2345679999987644
No 43
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=26.83 E-value=3.6e+02 Score=22.17 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred CceeEEEecCCCC--cceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCC
Q 014188 35 SPCLCEIRLRGFP--VQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGI 112 (429)
Q Consensus 35 spC~C~IrL~~fP--~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~ 112 (429)
+-+||+|.|..-. .++.--..+ .....|.- +-.-.|.+...++. . ..|+|.||.-.. ...+.
T Consensus 37 ~dpyv~v~l~~~~~~~~~~kT~v~-~~~~nP~w-ne~f~f~i~~~~l~---~--------~~l~i~v~~~~~---~~~~~ 100 (127)
T cd04030 37 PDPYVRLYLLPDKSKSTRRKTSVK-KDNLNPVF-DETFEFPVSLEELK---R--------RTLDVAVKNSKS---FLSRE 100 (127)
T ss_pred CCceEEEEEEcCCCCCceEecccc-cCCCCCEE-CeEEEEecCHHHhc---C--------CEEEEEEEECCc---ccCCC
Confidence 4469999995321 111111122 12223331 22345667666652 2 379999998543 11122
Q ss_pred cceeEEEEEEeec-CCCCCCcceEEeeceeec
Q 014188 113 KRHQIGTFKLEVG-PEWGEGKPIILFNGWIGI 143 (429)
Q Consensus 113 ~r~llG~~~v~ld-l~~ae~kp~v~h~GWi~i 143 (429)
.. +||.+.++|+ +...+. +++|..|
T Consensus 101 ~~-~iG~~~i~l~~l~~~~~-----~~~W~~L 126 (127)
T cd04030 101 KK-LLGQVLIDLSDLDLSKG-----FTQWYDL 126 (127)
T ss_pred Cc-eEEEEEEecccccccCC-----ccceEEC
Confidence 34 8999999996 333222 4788765
No 44
>PLN02270 phospholipase D alpha
Probab=26.52 E-value=81 Score=36.38 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=35.7
Q ss_pred cceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe---ecCCCce
Q 014188 113 KRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK---LDPDPRY 169 (429)
Q Consensus 113 ~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr---~EpDPRy 169 (429)
|-++||++.||++ +-..|.. -+||..|=...+|--++++.||+.++ +|.||-|
T Consensus 101 g~~~ig~~~~p~~-~~~~g~~---i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~ 156 (808)
T PLN02270 101 GATLIGRAYIPVE-EILDGEE---VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNW 156 (808)
T ss_pred CceEEEEEEEEHH-HhcCCCc---cccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcch
Confidence 3459999999997 2222332 58999994433344457899999987 4566654
No 45
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=25.12 E-value=3.9e+02 Score=21.97 Aligned_cols=84 Identities=20% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCceeEEEecCCCC-----cceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCccc
Q 014188 34 SSPCLCEIRLRGFP-----VQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHC 108 (429)
Q Consensus 34 sspC~C~IrL~~fP-----~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~C 108 (429)
..-+||+|.|.+.. .+|.. + .....|.- +---.|.++..+| . ...|+|.||.=.+.
T Consensus 34 ~~dpyv~v~l~~~~~~~~~~~T~~---~-~~~~~P~w-ne~f~f~i~~~~l---~--------~~~l~~~v~d~~~~--- 94 (134)
T cd00276 34 LSDPYVKVSLLQGGKKLKKKKTSV---K-KGTLNPVF-NEAFSFDVPAEQL---E--------EVSLVITVVDKDSV--- 94 (134)
T ss_pred CCCcEEEEEEEcCCeEeeeecCcc---e-ecCCCCee-eeeEEEECCHHHh---C--------CcEEEEEEEecCCC---
Confidence 34579999997653 13332 2 11223331 1134577777654 1 24899999985432
Q ss_pred ccCCcceeEEEEEEeecCCCCCCcceEEeeceeecCC
Q 014188 109 GVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGK 145 (429)
Q Consensus 109 Gv~~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk 145 (429)
...+ +||.++++++- ..++ .+-|..+=+
T Consensus 95 --~~~~-~lG~~~i~l~~-~~~~-----~~~W~~l~~ 122 (134)
T cd00276 95 --GRNE-VIGQVVLGPDS-GGEE-----LEHWNEMLA 122 (134)
T ss_pred --CCCc-eeEEEEECCCC-CCcH-----HHHHHHHHh
Confidence 2234 89999999986 2222 367877743
No 46
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=24.10 E-value=3.2e+02 Score=23.09 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=45.9
Q ss_pred CceeEEEecCCCC-----cceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccc
Q 014188 35 SPCLCEIRLRGFP-----VQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCG 109 (429)
Q Consensus 35 spC~C~IrL~~fP-----~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CG 109 (429)
+-+|.++.|..-+ .+|..+. ....|.- +-.-.|.++..+| .. ..|.|.||.-.+.
T Consensus 37 ~dpyVkv~l~p~~~~~~~~kT~v~~----~t~nP~~-nE~f~f~v~~~~l---~~--------~~L~~~V~d~~~~---- 96 (125)
T cd08393 37 SDPYVKTYLLPDKSNRGKRKTSVKK----KTLNPVF-NETLRYKVEREEL---PT--------RVLNLSVWHRDSL---- 96 (125)
T ss_pred CCcEEEEEEEcCCCccccccCccCc----CCCCCcc-CceEEEECCHHHh---CC--------CEEEEEEEeCCCC----
Confidence 4568999985333 2333221 1123331 2234577777665 22 4899999985432
Q ss_pred cCCcceeEEEEEEeec-CCCCCCcceEEeeceeec
Q 014188 110 VGIKRHQIGTFKLEVG-PEWGEGKPIILFNGWIGI 143 (429)
Q Consensus 110 v~~~r~llG~~~v~ld-l~~ae~kp~v~h~GWi~i 143 (429)
....+||.+.++|. ++..+. +..|..+
T Consensus 97 --~~~~~iG~~~i~L~~~~~~~~-----~~~W~~L 124 (125)
T cd08393 97 --GRNSFLGEVEVDLGSWDWSNT-----QPTWYPL 124 (125)
T ss_pred --CCCcEeEEEEEecCccccCCC-----CcceEEC
Confidence 12338999999995 344432 4556643
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=23.59 E-value=4.2e+02 Score=21.80 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=43.9
Q ss_pred ceeEEEecC---CCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCC
Q 014188 36 PCLCEIRLR---GFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGI 112 (429)
Q Consensus 36 pC~C~IrL~---~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~ 112 (429)
-.||++.+. +-..+|..++ ....|. ---.|.++....+.+.. ..|++.||.=.+. +.
T Consensus 38 dpyv~v~~~~~~~~~~kT~v~~----~t~~P~---Wne~f~f~~~~~~~l~~--------~~l~~~v~d~d~~-----~~ 97 (125)
T cd08386 38 DPFVKIYLLPDKKHKLETKVKR----KNLNPH---WNETFLFEGFPYEKLQQ--------RVLYLQVLDYDRF-----SR 97 (125)
T ss_pred CceEEEEECCCCCcceeeeeec----CCCCCc---cceeEEEcccCHHHhCC--------CEEEEEEEeCCCC-----cC
Confidence 458999983 2223444332 122332 12335554323333322 3799999963321 12
Q ss_pred cceeEEEEEEeec-CCCCCCcceEEeeceeec
Q 014188 113 KRHQIGTFKLEVG-PEWGEGKPIILFNGWIGI 143 (429)
Q Consensus 113 ~r~llG~~~v~ld-l~~ae~kp~v~h~GWi~i 143 (429)
.. +||.+.++|. ++..+. ++.|..|
T Consensus 98 ~~-~iG~~~i~l~~l~~~~~-----~~~W~~l 123 (125)
T cd08386 98 ND-PIGEVSLPLNKVDLTEE-----QTFWKDL 123 (125)
T ss_pred Cc-EeeEEEEecccccCCCC-----cceEEec
Confidence 23 8999999996 343332 6777765
No 48
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=23.56 E-value=1.4e+02 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=25.1
Q ss_pred cceEEeeceeecCCCCcCCCCCCcEEEEEEeecCCCceEEEeCCcc
Q 014188 132 KPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVT 177 (429)
Q Consensus 132 kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpDPRyVFQFdgep 177 (429)
--....+||..+|+. +..-|+ +-|=|+++||+|
T Consensus 166 ~~~~~~~g~~p~g~~-----------~~VT~a--~~~~I~eld~~P 198 (198)
T PF08495_consen 166 IDSFVSHGWEPIGKP-----------MTVTKA--EGNIIYELDGRP 198 (198)
T ss_pred EEEEEecCeEeCCCC-----------EEEEEe--cCCEEEEECCcC
Confidence 337789999999873 233344 889999999998
No 49
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=22.39 E-value=3.2e+02 Score=22.25 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=40.0
Q ss_pred ceeEEEecCCC-----CcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCccccc
Q 014188 36 PCLCEIRLRGF-----PVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGV 110 (429)
Q Consensus 36 pC~C~IrL~~f-----P~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv 110 (429)
-.||+|.|..- -.+|.. + .....|.- +-.-.|++.+.+|+ ...|+|.||.-++.
T Consensus 37 dpyv~v~l~~~~~~~~~~kT~v---~-~~t~~P~w-ne~f~f~i~~~~l~-----------~~~l~i~v~d~~~~----- 95 (123)
T cd08521 37 NPYVKVYLLPDKSKQSKRKTSV---K-KNTTNPVF-NETLKYHISKSQLE-----------TRTLQLSVWHHDRF----- 95 (123)
T ss_pred CcEEEEEEecCCCcCceeeccc---c-CCCCCCcc-cceEEEeCCHHHhC-----------CCEEEEEEEeCCCC-----
Confidence 34999988321 123332 2 22233431 22355888887762 24799999985432
Q ss_pred CCcceeEEEEEEeec
Q 014188 111 GIKRHQIGTFKLEVG 125 (429)
Q Consensus 111 ~~~r~llG~~~v~ld 125 (429)
+... +||.+.++|+
T Consensus 96 ~~~~-~iG~~~i~l~ 109 (123)
T cd08521 96 GRNT-FLGEVEIPLD 109 (123)
T ss_pred cCCc-eeeEEEEecc
Confidence 2234 8999999986
No 50
>PF11445 DUF2894: Protein of unknown function (DUF2894); InterPro: IPR021549 This is a bacterial family of uncharacterised proteins.
Probab=21.15 E-value=21 Score=34.56 Aligned_cols=17 Identities=53% Similarity=0.966 Sum_probs=12.8
Q ss_pred hhhhhccCC--CCceeeEE
Q 014188 290 LEAWRERGI--RDSVCCRF 306 (429)
Q Consensus 290 LEAWRErG~--~d~lgyRf 306 (429)
|+||||+|. .|-+++||
T Consensus 1 LdawR~~GAdr~DPvRF~~ 19 (200)
T PF11445_consen 1 LDAWRAQGADRFDPVRFRF 19 (200)
T ss_pred ChhHHhcCccccCcHHHHH
Confidence 799999995 46666655
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=20.36 E-value=7.3e+02 Score=29.36 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=54.1
Q ss_pred ceeeeccccCCC----CCC--CCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCccee--EEEE
Q 014188 49 QTTQVPLVSSPE----ALP--DIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQ--IGTF 120 (429)
Q Consensus 49 qta~vPL~~~~~----~~p--~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~l--lG~~ 120 (429)
-|-++|+++.++ +.| +-+++-..+-|.=+..+...+. - ..++| +.+ ..||-+. +.. -=++
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~dI~y~l~vtLEeLY~G~--t----KkIKi---tR~--V~~g~G~-ktvkE~ktL 699 (871)
T TIGR03835 632 LTNQLPFISQPPASEYQEPNLDETNVNLVYEEEVPQILFFNNQ--I----KEIKY---TRH--TVDGNTE-STTNEAITL 699 (871)
T ss_pred hccCCCcccCCccccccCCCccccccceEEecccCHHHHhCCC--e----EEEEE---EEe--eccCCCc-ceeeeeEEE
Confidence 467788887544 233 3445555555554444444433 2 23433 211 1132111 101 2256
Q ss_pred EEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCCCce
Q 014188 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRY 169 (429)
Q Consensus 121 ~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpDPRy 169 (429)
.|.|..-+.+|.-++|.+- |. ...+.. ..|+++|++.|+|+|
T Consensus 700 eVkIPpGVkdGqkIRf~Ge----GD--egpgg~-GDLyVvIkVKPHp~F 741 (871)
T TIGR03835 700 EIQLPITSQLNISAIFKGF----GH--DFGNGC-GDLKVVFKVIPSNFF 741 (871)
T ss_pred EEecCCCCCCCCEEEeccc----cC--CCCCCC-CCEEEEEEEcCCCCe
Confidence 7777767777776777631 22 111122 689999999999973
No 52
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=20.13 E-value=59 Score=25.44 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=9.3
Q ss_pred ceEEEEeeCCCCC
Q 014188 269 GAWLIVRPDACRA 281 (429)
Q Consensus 269 GAWLIlRP~~~~~ 281 (429)
|.||++||.++.+
T Consensus 35 G~~l~vR~SgTEP 47 (73)
T PF00408_consen 35 GWRLLVRPSGTEP 47 (73)
T ss_dssp EEEEEEEEESSSS
T ss_pred ceEEEEECCCCCc
Confidence 5666699988743
Done!