BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014190
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
Query: 82 GGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRH-IFGRQFQTCDFVLDHQS 140
G + P WA +P ++ LDV+K ++++++ +D +++ +FGR CDF +DHQS
Sbjct: 16 GSSLPLFDCPTWAGKPPPGLH-LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQS 74
Query: 141 ISRQHAAVIPHKN-GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYIL 199
SR HAA++ HK+ +++IDL S HGTF+ + RL P ++ + ++ F ASTR Y L
Sbjct: 75 CSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTL 134
Query: 200 RK 201
R+
Sbjct: 135 RE 136
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 88 WQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRH-IFGRQFQTCDFVLDHQSISRQHA 146
+Q P W P ++ Y L+ LK G IL +L + +FGR CD L+H S+SR HA
Sbjct: 8 YQEPPWG-GPATAPYSLETLKGGTILGTRSLKGTSYCLFGR-LSGCDVCLEHPSVSRYHA 65
Query: 147 AVIPHK----------NG-SIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTR 195
V+ H+ NG Y+ DLGS HGTF+ R+ T + VG +RF STR
Sbjct: 66 -VLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTR 124
Query: 196 TYILR 200
+IL+
Sbjct: 125 LFILQ 129
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
Length = 145
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 89 QPPDWAIEPRSSVYYLDVLKDGEILDR-INLDRRR-HIFGRQFQTCDFVLDHQSISRQHA 146
+PP+ A +P S + L V KDGE L+ + L R+ ++FGR+ + D DH S S+QHA
Sbjct: 6 EPPE-ARKP-SERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHA 63
Query: 147 AV------------IPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAAST 194
+ K Y+ DLGS + T++ + + EL +++F S+
Sbjct: 64 VIQYREXEKEKPDGXXGKQVKPYIXDLGSTNKTYINESPIEPQRYYELFEKDTIKFGNSS 123
Query: 195 RTYILRKNTDA 205
R Y+L A
Sbjct: 124 REYVLLHENSA 134
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
pdb|3GQS|B Chain B, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
Length = 106
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 102 YYLDVLKDGEILDRINLDR-RRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVID 160
+ L VL I +LD + +I G Q D VL SISRQHA +I + S+ + D
Sbjct: 5 FLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNSVLIED 64
Query: 161 LGSAHGTFVANERLTKETPV 180
LGS +G V ++ ++ +
Sbjct: 65 LGSKNGVIVEGRKIEHQSTL 84
>pdb|2FEZ|A Chain A, Mycobacterium Tuberculosis Embr
pdb|2FF4|A Chain A, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
pdb|2FF4|B Chain B, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
Length = 388
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 133 DFVLDHQSISRQHAAVIPHKNGSIYVI-DLGSAHGTFVANERLTKETPVELEVGQSLRFA 191
D VLD ++SR HA ++ G+ YVI DL S++G V +ER+ + V L G +R
Sbjct: 317 DIVLDSANVSRHHAVIV--DTGTNYVINDLRSSNGVHVQHERI--RSAVTLNDGDHIRIC 372
Query: 192 ASTRTYILRKNT 203
T+ + T
Sbjct: 373 DHEFTFQISAGT 384
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 115 RINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANE 172
R LD+ GR ++ D LD ++SR+HA ++ G V+D+GS +GT+V E
Sbjct: 60 RFLLDQPTTTAGRHPES-DIFLDDVTVSRRHAEFRINE-GEFEVVDVGSLNGTYVNRE 115
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 115 RINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANE 172
R LD+ GR ++ D LD ++SR+HA ++ G V+D+GS +GT+V E
Sbjct: 60 RFLLDQPTTTAGRHPES-DIFLDDVTVSRRHAEFRINE-GEFEVVDVGSLNGTYVNRE 115
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 125 FGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEV 184
GR + + + IS +H I +G+ + DLGS++GT + + L ET V L
Sbjct: 37 VGRIVRGNEIAIKDAGISTKHLR-IESDSGNWVIQDLGSSNGTLLNSNALDPETSVNLGD 95
Query: 185 GQSLRFAASTRTYI 198
G ++ T +
Sbjct: 96 GDVIKLGEYTSILV 109
>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
Length = 162
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 115 RINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANE 172
R LD+ GR D LD ++SR+HA +N V+D+GS +GT+V E
Sbjct: 69 RFLLDQAITSAGRH-PDSDIFLDDVTVSRRHAE-FRLENNEFNVVDVGSLNGTYVNRE 124
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 132 CDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANE 172
D LD ++SR+HA + G V+D+GS +GT+V E
Sbjct: 41 SDIFLDDVTVSRRHAE-FRLEGGEFQVVDVGSLNGTYVNRE 80
>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
Mycobacterium Bovis. Northeast Structural Genomics
Consortium Target Mbr243c (24-155)
Length = 140
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 132 CDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANE 172
D LD ++SR+HA +N V+D+GS +GT+V E
Sbjct: 62 SDIFLDDVTVSRRHAE-FRLENNEFNVVDVGSLNGTYVNRE 101
>pdb|3RDM|A Chain A, Crystal Structure Of R7-2 Streptavidin Complexed With
BiotinPEG
pdb|3RDO|A Chain A, Crystal Structure Of R7-2 Streptavidin Complexed With
Biotin
pdb|3RDQ|A Chain A, Crystal Structure Of R7-2 Streptavidin Complexed With
Desthiobiotin
pdb|3RDS|A Chain A, Crystal Structure Of The Refolded R7-2 Streptavidin
pdb|3RDU|A Chain A, Crystal Structure Of R7-2 Streptavidin Complexed With Peg
pdb|3RDX|A Chain A, Crystal Structure Of Ligand-Free R7-2 Streptavidin
pdb|3RDX|B Chain B, Crystal Structure Of Ligand-Free R7-2 Streptavidin
Length = 153
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 280 SFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGS--LVGKYES 321
++ +Q G L+ G +DGA GT +G EGS L G+Y+S
Sbjct: 33 TWYNQLGSTLIVTAG-ADGALTGTYESAVGNAEGSYVLTGRYDS 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,169,422
Number of Sequences: 62578
Number of extensions: 487742
Number of successful extensions: 859
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 21
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)