Query 014190
Match_columns 429
No_of_seqs 318 out of 1554
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1880 Nuclear inhibitor of p 100.0 3.6E-37 7.7E-42 301.6 11.2 247 85-372 2-256 (337)
2 KOG1882 Transcriptional regula 99.8 2.6E-20 5.7E-25 179.0 4.5 139 60-202 136-287 (293)
3 PF00498 FHA: FHA domain; Int 99.8 2.5E-18 5.5E-23 133.7 8.9 68 123-191 1-68 (68)
4 KOG1881 Anion exchanger adapto 99.7 1.8E-17 3.9E-22 177.9 9.1 117 84-202 140-267 (793)
5 cd00060 FHA Forkhead associate 99.6 7.3E-15 1.6E-19 120.0 13.6 97 102-199 2-100 (102)
6 PLN02927 antheraxanthin epoxid 99.5 2.8E-14 6.1E-19 155.8 11.0 100 100-201 532-646 (668)
7 TIGR03354 VI_FHA type VI secre 99.5 1.4E-13 3E-18 142.4 12.3 86 113-201 16-105 (396)
8 COG1716 FOG: FHA domain [Signa 99.4 2.8E-12 6E-17 117.3 11.9 79 118-200 86-165 (191)
9 smart00240 FHA Forkhead associ 99.3 4.1E-12 8.9E-17 93.5 5.9 52 123-174 1-52 (52)
10 COG3456 Predicted component of 99.1 2.3E-10 4.9E-15 118.1 8.8 85 114-201 19-106 (430)
11 KOG0615 Serine/threonine prote 98.6 1.3E-07 2.7E-12 98.4 7.3 87 114-202 57-158 (475)
12 TIGR02500 type_III_yscD type I 97.9 5.6E-05 1.2E-09 78.9 9.3 90 102-197 1-93 (410)
13 KOG2293 Daxx-interacting prote 97.4 0.00044 9.6E-09 73.9 7.9 96 104-202 433-534 (547)
14 KOG0245 Kinesin-like protein [ 97.3 0.0015 3.2E-08 74.5 11.1 99 103-205 456-560 (1221)
15 KOG1880 Nuclear inhibitor of p 97.0 0.00071 1.5E-08 68.2 4.5 144 225-382 150-300 (337)
16 KOG1892 Actin filament-binding 96.6 0.0044 9.6E-08 70.3 7.5 98 100-201 356-455 (1629)
17 TIGR01663 PNK-3'Pase polynucle 94.5 0.092 2E-06 57.1 7.3 84 114-201 25-109 (526)
18 KOG0241 Kinesin-like protein [ 91.2 0.83 1.8E-05 52.8 8.6 75 122-201 468-542 (1714)
19 PRK15367 type III secretion sy 85.0 3.2 6.9E-05 43.9 7.8 87 101-196 4-90 (395)
20 COG5025 Transcription factor o 53.0 11 0.00023 42.2 2.9 65 137-202 123-191 (610)
21 TIGR02988 YaaA_near_RecF S4 do 36.3 37 0.00079 25.8 2.7 25 165-190 34-58 (59)
22 smart00363 S4 S4 RNA-binding d 34.1 63 0.0014 22.7 3.6 28 164-192 25-52 (60)
23 PF13275 S4_2: S4 domain; PDB: 32.6 38 0.00082 27.2 2.3 30 165-195 33-62 (65)
24 COG1188 Ribosome-associated he 30.2 71 0.0015 27.9 3.8 34 167-202 36-71 (100)
25 COG2501 S4-like RNA binding pr 30.0 97 0.0021 25.6 4.3 30 164-194 36-65 (73)
26 PRK11507 ribosome-associated p 29.2 93 0.002 25.5 4.1 29 165-194 37-65 (70)
27 smart00797 AHS2 Allophanate hy 28.6 1.3E+02 0.0028 30.5 6.0 38 162-199 52-92 (280)
28 PRK01777 hypothetical protein; 28.1 57 0.0012 27.9 2.8 30 159-191 45-74 (95)
29 TIGR01687 moaD_arch MoaD famil 27.9 56 0.0012 26.5 2.7 25 166-190 57-81 (88)
30 PF01479 S4: S4 domain; Inter 27.2 47 0.001 23.9 1.9 24 164-188 25-48 (48)
31 COG1984 DUR1 Allophanate hydro 26.8 1.5E+02 0.0033 30.7 6.1 55 144-200 57-114 (314)
32 cd01764 Urm1 Urm1-like ubuitin 26.1 53 0.0012 27.8 2.3 25 167-191 62-88 (94)
33 cd00754 MoaD Ubiquitin domain 24.9 73 0.0016 24.9 2.8 24 165-190 50-73 (80)
34 PF02626 AHS2: Allophanate hyd 24.5 1.1E+02 0.0023 31.0 4.4 39 162-200 52-93 (271)
35 PF14478 DUF4430: Domain of un 23.9 61 0.0013 25.4 2.1 23 168-190 44-67 (68)
36 PF11012 DUF2850: Protein of u 22.5 1.7E+02 0.0038 24.4 4.6 38 163-203 22-61 (79)
37 TIGR00724 urea_amlyse_rel biot 20.8 1.9E+02 0.0041 29.9 5.4 33 161-193 73-106 (314)
38 KOG1881 Anion exchanger adapto 20.7 31 0.00066 39.4 -0.2 74 123-197 62-136 (793)
39 cd00165 S4 S4/Hsp/ tRNA synthe 20.6 1.2E+02 0.0026 21.8 3.1 28 164-192 25-52 (70)
No 1
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=301.55 Aligned_cols=247 Identities=39% Similarity=0.664 Sum_probs=196.8
Q ss_pred cccccCCCCCCCCCCccEEEEEEeCCceeeE-EEeCCCcEEEeccCCCCCEEeCCCCccccceEEEeeeCC-eEEEEECC
Q 014190 85 QSTWQPPDWAIEPRSSVYYLDVLKDGEILDR-INLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNG-SIYVIDLG 162 (429)
Q Consensus 85 ~~~~~~P~wa~~P~~~~~~L~V~k~g~~~~~-i~L~~~~~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g-~~~L~DLg 162 (429)
.+.|.+|.||.+|+++. +|.+.++...++. +.+.++.|+|||+...||++|+|.+|||+||.+.|+++. ++||+|||
T Consensus 2 ~s~~~~p~wA~kpp~g~-hldv~k~d~li~kl~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~ 80 (337)
T KOG1880|consen 2 QSNFDPPSWAGKPPAGL-HLDVVKGDKLIQKLIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLG 80 (337)
T ss_pred CCcCCCCCcccCCCCCC-ceeeeecchhHHHHHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEcc
Confidence 46789999999999988 5666655555544 445555599999999999999999999999999999875 59999999
Q ss_pred CCcceEEcCEEccCCCcEEecCCCEEEEcCeeEEEEEecCCcc--ccCCCCCCCCCCCC-CCCCCCChHHHHHHHHHhhH
Q 014190 163 SAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDA--LFARPPPATEINLP-PPPDPSDEEAVVVYNTLINR 239 (429)
Q Consensus 163 StNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r~fil~~~~e~--~~~~~~pp~~~~lp-~p~~~~dee~l~~~nt~lnr 239 (429)
|++||||...||.+.++++|..|..++||.++|.|.++...+. .+..++|+...... +++++.+++++++||+++|+
T Consensus 81 s~hgtf~g~~rL~~~~p~~l~i~~~~~fgasTr~y~lr~k~~~~~~~~~d~p~~~~~d~~lp~~~~e~e~~~~~nt~~n~ 160 (337)
T KOG1880|consen 81 STHGTFLGNERLEPHKPVQLEIGSTFHFGASTRIYLLREKTEHHSLVSRDPPPAEISDEGLPPDATELDNLTEYNTAHNR 160 (337)
T ss_pred CCcceeeeeeeeccCCCccccCCceEEEeccceeeeeecccCccccccCCCCcccccCCCCCCchhhhHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999988433 25555555555444 56677888999999999999
Q ss_pred hcCCccccccccCCCCCCCCCCCCCC-chhHH-HhhhcccceeeecCCCCeeEEEecccCCCCCCCCCCCccCcCCCcce
Q 014190 240 YGLSKSDLICRSGEPSRSSIGRDDGQ-QPERA-AKRIKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLVG 317 (429)
Q Consensus 240 ~~i~~~~l~~~s~e~~~~~~~~~~~~-~~~~~-~k~~~~~~v~f~~~~g~~~~e~i~~~~~~dv~~~~~~~~~~~g~~vg 317 (429)
| | +.+|+..+. -.+++ +|+++-++|.|.+. ++||| +|||+ +.||
T Consensus 161 ~-i--------------s~~~~~~g~~~~q~~~kk~~~~~~vtf~~~-----~~iin---peqvd-----------p~v~ 206 (337)
T KOG1880|consen 161 R-I--------------SSLGISGGNMLIQRKEKKGSNARVVTFMKK-----VRVIN---PEQVD-----------PNVA 206 (337)
T ss_pred h-h--------------eeeeeccCcchhhhhhhhcccccceeeecc-----ceeeC---HhhcC-----------chhh
Confidence 9 6 334444442 13333 34445567999999 69998 99998 9999
Q ss_pred eecceEEEEEecCCCCCCCccccCCCCccchhHHHHHHhhccC-CCCCCCCCCCCC
Q 014190 318 KYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQEVLNKVKS-GPKSRIYDDLYG 372 (429)
Q Consensus 318 ~~~~~~q~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~ 372 (429)
+|||+||++|+|.+|++.++. +..++.+ .+..+.++. ..+.|||..|++
T Consensus 207 rfrnmvqtavvp~e~~rv~~~----Gsl~l~e--e~~~r~~q~f~~s~gl~~~~pp 256 (337)
T KOG1880|consen 207 RFRNMVQTAVVPVEKKRVEVP----GSLGLEE--ESGVRVMQNFAFSVGLYGGLPP 256 (337)
T ss_pred hhhcCcccccccccccccccC----Ccccccc--cccceeecccccccceecccCC
Confidence 999999999999998888773 3333433 135566777 888889999998
No 2
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-20 Score=178.96 Aligned_cols=139 Identities=27% Similarity=0.416 Sum_probs=120.6
Q ss_pred cccccccccccccccCCceeecCCccccccCCCCCCCCCCccEEEEEEeCCceeeEEEeCCCc-EEEeccCCCCCEEeCC
Q 014190 60 SQNSIKQEASLSVGKAQQVTQIGGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRR-HIFGRQFQTCDFVLDH 138 (429)
Q Consensus 60 s~~~i~~~sq~l~a~s~~~t~~~G~~~~~~~P~wa~~P~~~~~~L~V~k~g~~~~~i~L~~~~-~~IGRd~~~cDIvLdd 138 (429)
.-.+.+.-++.+.-.+|... |++..|..|+.+..|- ..|.|..++++..+.++.++... |+|||+...+||.|+|
T Consensus 136 ke~p~f~lsg~l~E~tn~~~---gv~v~y~eppearkP~-kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idh 211 (293)
T KOG1882|consen 136 KEKPSFELSGALLEDTNRFR---GVVVKYNEPPEARKPK-KRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDH 211 (293)
T ss_pred ccCCchhhchhhhhhhccee---eEEEEecCCchhcCch-hheecccccCCcccchheeeeeeeeecCceeeeeccCCCC
Confidence 34455666677777777764 8888999999888776 57999999999998888888877 9999987899999999
Q ss_pred CCccccceEEEeee------CC------eEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcCeeEEEEEecC
Q 014190 139 QSISRQHAAVIPHK------NG------SIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKN 202 (429)
Q Consensus 139 ~sVSR~HA~I~~~~------~g------~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r~fil~~~ 202 (429)
++||++||+|+|+. +| ..||+||||+||||||..+|.+.+|++|..+|+|+||.+.+.|++..+
T Consensus 212 pScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~rEyvllhe 287 (293)
T KOG1882|consen 212 PSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFGFSSREYVLLHE 287 (293)
T ss_pred ccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchheeeeecCceeeeccchHHHHHHHh
Confidence 99999999999873 22 489999999999999999999999999999999999999999988765
No 3
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.76 E-value=2.5e-18 Score=133.72 Aligned_cols=68 Identities=44% Similarity=0.750 Sum_probs=62.1
Q ss_pred EEEeccCCCCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEc
Q 014190 123 HIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFA 191 (429)
Q Consensus 123 ~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG 191 (429)
|+|||+ ..|||+|+++.|||+||.|.+..++.|||+|++|+|||||||++|.++.+++|++||+|+||
T Consensus 1 ~~iGR~-~~~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRS-PDCDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESS-TTSSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCC-CCCCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 689996 89999999999999999999875448999999999999999999999999999999999998
No 4
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.71 E-value=1.8e-17 Score=177.92 Aligned_cols=117 Identities=37% Similarity=0.697 Sum_probs=106.0
Q ss_pred ccccccCCCCCCCCCCccEEEEEEeCCceeeEEEeCCCc-EEEeccCCCCCEEeCCCCccccceEEEeeeCC--------
Q 014190 84 GQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRR-HIFGRQFQTCDFVLDHQSISRQHAAVIPHKNG-------- 154 (429)
Q Consensus 84 ~~~~~~~P~wa~~P~~~~~~L~V~k~g~~~~~i~L~~~~-~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g-------- 154 (429)
....|..|+|+.+|. ..|.|.+++.|..+..+.|.... |+|||. ..||+++.|++|||.||+|+|...+
T Consensus 140 ~~~py~vppw~~P~~-~~~~lEvlKeg~iiet~~l~~~~~~~fgr~-~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~ 217 (793)
T KOG1881|consen 140 AAAPYEVPPWSGPPA-AIFQLEVLKEGAIIETEDLKGAAACLFGRL-GGCDVALEHPSISRFHAVLQYKASGPDDPCASN 217 (793)
T ss_pred CCCcccCCCCCCCcc-cchhhhhhccCceeeeeecccceeEEeccc-CCCccccccCcccccceeeeccCCCCCccccCC
Confidence 346799999998854 56899999999999999998887 899995 7999999999999999999986432
Q ss_pred --eEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcCeeEEEEEecC
Q 014190 155 --SIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKN 202 (429)
Q Consensus 155 --~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r~fil~~~ 202 (429)
.|||.|||||||||+|..|+.+.+++.++.|++++||.++|.|+|...
T Consensus 218 ~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v~~fggsTrl~i~Qgp 267 (793)
T KOG1881|consen 218 GEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHVARFGGSTRLYIFQGP 267 (793)
T ss_pred CCceEEeeccccccceeccccCCCcchhhhhHHHHHHhcCceEEEEeeCC
Confidence 389999999999999999999999999999999999999999999974
No 5
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.63 E-value=7.3e-15 Score=120.04 Aligned_cols=97 Identities=34% Similarity=0.525 Sum_probs=84.6
Q ss_pred EEEEEEeCCceeeEEEeCC-CcEEEeccCCCC-CEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCc
Q 014190 102 YYLDVLKDGEILDRINLDR-RRHIFGRQFQTC-DFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETP 179 (429)
Q Consensus 102 ~~L~V~k~g~~~~~i~L~~-~~~~IGRd~~~c-DIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp 179 (429)
|.|.+..+......+.|.. ..++|||+ ..| +|.|.++.|||.||+|.++.++.+++.|+.|.||||||++++..+..
T Consensus 2 ~~L~~~~~~~~~~~~~l~~~~~~~iGr~-~~~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~~~~~~~~ 80 (102)
T cd00060 2 PRLVVLSGDASGRRYYLDPGGTYTIGRD-SDNCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQRVSPGEP 80 (102)
T ss_pred eEEEEecCCCceeEEEECCCCeEEECcC-CCcCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCEECCCCCc
Confidence 5788887766677899999 77999996 677 99999999999999999975468999999999999999999998888
Q ss_pred EEecCCCEEEEcCeeEEEEE
Q 014190 180 VELEVGQSLRFAASTRTYIL 199 (429)
Q Consensus 180 ~~L~~GD~I~fG~s~r~fil 199 (429)
+.|.+||.|.||.....|++
T Consensus 81 ~~l~~gd~i~ig~~~~~~~~ 100 (102)
T cd00060 81 VRLRDGDVIRLGNTSISFRF 100 (102)
T ss_pred EECCCCCEEEECCeEEEEEE
Confidence 99999999999975555544
No 6
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.53 E-value=2.8e-14 Score=155.76 Aligned_cols=100 Identities=25% Similarity=0.497 Sum_probs=83.5
Q ss_pred ccEEEEEEeCCc-eeeEEEe---CCCcEEEeccCCCCCE-----EeCCCCccccceEEEeeeCCeEEEEECCCCcceEEc
Q 014190 100 SVYYLDVLKDGE-ILDRINL---DRRRHIFGRQFQTCDF-----VLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVA 170 (429)
Q Consensus 100 ~~~~L~V~k~g~-~~~~i~L---~~~~~~IGRd~~~cDI-----vLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVN 170 (429)
+.|+|+...++. ..+.|.| ....++|||. +.||+ +|.++.||+.||+|.+. ++.|||+||+|+||||||
T Consensus 532 ~~w~l~~~~~~~~~~~~~~l~~~~~~p~~iG~~-~~~~~~~~~i~i~~~~vS~~Ha~i~~~-~~~~~~~Dl~S~nGT~v~ 609 (668)
T PLN02927 532 GEWYLIPHGDDCCVSETLCLTKDEDQPCIVGSE-PDQDFPGMRIVIPSSQVSKMHARVIYK-DGAFFLMDLRSEHGTYVT 609 (668)
T ss_pred CCeEEEecCCCCcccceeeeecCCCCCeEecCC-CCcCCCCceEEecCCccChhHeEEEEE-CCEEEEEECCCCCccEEe
Confidence 579999975543 3456888 5566999996 89995 99999999999999986 789999999999999997
Q ss_pred CEE-----ccCCCcEEecCCCEEEEcCee-EEEEEec
Q 014190 171 NER-----LTKETPVELEVGQSLRFAAST-RTYILRK 201 (429)
Q Consensus 171 G~R-----L~~~kp~~L~~GD~I~fG~s~-r~fil~~ 201 (429)
|.+ +.++.++.|++||+|+||... ..|++..
T Consensus 610 ~~~~~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~ 646 (668)
T PLN02927 610 DNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKV 646 (668)
T ss_pred CCCCceEecCCCCceEeCCCCEEEeCCCcceeEEEEe
Confidence 765 557889999999999999954 4577665
No 7
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.49 E-value=1.4e-13 Score=142.37 Aligned_cols=86 Identities=28% Similarity=0.487 Sum_probs=78.5
Q ss_pred eeEEEeCCCcEEEeccCCCCCEEeCCCC--ccccceEEEeeeCCeEEEEECCCCcceEEc--CEEccCCCcEEecCCCEE
Q 014190 113 LDRINLDRRRHIFGRQFQTCDFVLDHQS--ISRQHAAVIPHKNGSIYVIDLGSAHGTFVA--NERLTKETPVELEVGQSL 188 (429)
Q Consensus 113 ~~~i~L~~~~~~IGRd~~~cDIvLdd~s--VSR~HA~I~~~~~g~~~L~DLgStNGTfVN--G~RL~~~kp~~L~~GD~I 188 (429)
...+.+....++|||+ ..|||+|.++. ||++||+|+++ ++.|+|+|+ |+|||||| |.+|.++.++.|.+||+|
T Consensus 16 ~~~~~f~~~~~~IGR~-~~~d~~l~d~~~~VS~~Ha~I~~~-~g~~~l~Dl-StNGT~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 16 AAQKTFGTNGGTIGRS-EDCDWVLPDPERHVSGRHARIRYR-DGAYLLTDL-STNGVFLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred ceEEEECCCCEEEecC-CCCCEEeCCCCCCcchhhcEEEEE-CCEEEEEEC-CCCCeEECCCCCCCCCCCceEcCCCCEE
Confidence 4578899888999995 79999999988 99999999986 678999999 99999999 899999889999999999
Q ss_pred EEcCeeEEEEEec
Q 014190 189 RFAASTRTYILRK 201 (429)
Q Consensus 189 ~fG~s~r~fil~~ 201 (429)
+||.....+.+..
T Consensus 93 ~iG~~~lrv~~~~ 105 (396)
T TIGR03354 93 RLGDYEIRVSLGD 105 (396)
T ss_pred EECCEEEEEEeCC
Confidence 9999988888854
No 8
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.39 E-value=2.8e-12 Score=117.31 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=68.3
Q ss_pred eCCCcEEEeccCCCCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcCeeE-E
Q 014190 118 LDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTR-T 196 (429)
Q Consensus 118 L~~~~~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r-~ 196 (429)
+....++||| ..++++++++..|||+||.|.++ ...+|++|++|+|||||||.++.. .+.|.+||+|.||.... .
T Consensus 86 ~~~~~~tigr-~~~~~i~~~~~~vSR~Ha~l~~~-~~~~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~~~~~~ 161 (191)
T COG1716 86 LGEPVTTIGR-DPDNDIVLDDDVVSRRHAELRRE-GNEVFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGGTLAER 161 (191)
T ss_pred cccceEEecc-CCCCCEEcCCCccccceEEEEEe-CCceEEEECCCCcceEECCeEccC--cEEcCCCCEEEECccceee
Confidence 3334699999 59999999999999999999987 457999999999999999999995 58999999999999877 4
Q ss_pred EEEe
Q 014190 197 YILR 200 (429)
Q Consensus 197 fil~ 200 (429)
+...
T Consensus 162 ~~~~ 165 (191)
T COG1716 162 LRII 165 (191)
T ss_pred Eeec
Confidence 4333
No 9
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.30 E-value=4.1e-12 Score=93.46 Aligned_cols=52 Identities=44% Similarity=0.773 Sum_probs=46.4
Q ss_pred EEEeccCCCCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEc
Q 014190 123 HIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERL 174 (429)
Q Consensus 123 ~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL 174 (429)
++|||+...|+++|+++.||+.||+|.++.++.|+|.|++|+|||||||++|
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCEEC
Confidence 4799963399999999999999999998766669999999999999999986
No 10
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.09 E-value=2.3e-10 Score=118.14 Aligned_cols=85 Identities=22% Similarity=0.367 Sum_probs=73.7
Q ss_pred eEEEeCCCcEEEeccCCCCCEEeCCC--CccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCc-EEecCCCEEEE
Q 014190 114 DRINLDRRRHIFGRQFQTCDFVLDHQ--SISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETP-VELEVGQSLRF 190 (429)
Q Consensus 114 ~~i~L~~~~~~IGRd~~~cDIvLdd~--sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp-~~L~~GD~I~f 190 (429)
....+..+...||| ..+||+.|+|+ .||+.||+|.++ +|.|||.|. |.|||||||..+..+.. .+|..||+|.|
T Consensus 19 aq~~f~~~~g~IGr-s~dcdW~i~D~~~~VS~~Hc~I~~~-dg~f~L~Dt-S~g~l~VNgs~~~~g~~~~RLqqGd~i~i 95 (430)
T COG3456 19 AQKLFDRGGGVIGR-SPDCDWQIDDPERFVSKQHCTISYR-DGGFCLTDT-SNGGLLVNGSDLPLGEGSARLQQGDEILI 95 (430)
T ss_pred hhhhhhcCCccccc-CCCCCccccCcccccchhheEEEec-CCeEEEEec-CCCceeecccccCCCCCccccccCCEEee
Confidence 35667777889999 49999999875 799999999987 778999999 79999999999988887 99999999999
Q ss_pred cCeeEEEEEec
Q 014190 191 AASTRTYILRK 201 (429)
Q Consensus 191 G~s~r~fil~~ 201 (429)
|...+...|..
T Consensus 96 G~y~i~V~l~~ 106 (430)
T COG3456 96 GRYIIRVHLSR 106 (430)
T ss_pred ccEEEEEEecc
Confidence 99776666653
No 11
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=1.3e-07 Score=98.37 Aligned_cols=87 Identities=25% Similarity=0.482 Sum_probs=73.4
Q ss_pred eEEEeCCCcEEEeccCCCCCEEeCCCCccccceEEEee-------------e-CCeEEEEECCCCcceEEcCEEccCCCc
Q 014190 114 DRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPH-------------K-NGSIYVIDLGSAHGTFVANERLTKETP 179 (429)
Q Consensus 114 ~~i~L~~~~~~IGRd~~~cDIvLdd~sVSR~HA~I~~~-------------~-~g~~~L~DLgStNGTfVNG~RL~~~kp 179 (429)
..+.+..+.|+|||+ +.||+.+....+|..|..|... + ...+|+.|+ |+||||||.++|.++..
T Consensus 57 ~~~d~~nd~f~fGR~-~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e~i~k~~~ 134 (475)
T KOG0615|consen 57 KSIDLANDEFTFGRG-DSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDEMIGKGLS 134 (475)
T ss_pred ccceeccceEEecCC-CcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHhHhhcccc
Confidence 468889999999995 8999999988899999888543 0 136899999 99999999999999999
Q ss_pred EEecCCCEEEEcCe-eEEEEEecC
Q 014190 180 VELEVGQSLRFAAS-TRTYILRKN 202 (429)
Q Consensus 180 ~~L~~GD~I~fG~s-~r~fil~~~ 202 (429)
..|++||+|.||.. ...|++...
T Consensus 135 r~lkN~dei~is~p~~~~~v~~~~ 158 (475)
T KOG0615|consen 135 RILKNGDEISISIPALKIFVFEDL 158 (475)
T ss_pred ccccCCCEEEeccchhheeeeecc
Confidence 99999999999985 456666653
No 12
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.86 E-value=5.6e-05 Score=78.92 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=72.7
Q ss_pred EEEEEEeCCceeeEEEeCCCcEEEe-ccCCCCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcC--EEccCCC
Q 014190 102 YYLDVLKDGEILDRINLDRRRHIFG-RQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVAN--ERLTKET 178 (429)
Q Consensus 102 ~~L~V~k~g~~~~~i~L~~~~~~IG-Rd~~~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG--~RL~~~k 178 (429)
|.|.|+.|...+..+.|..+.++|| + ...|||+|.|+.||++||+|.+.. ..+.+.+ +..+.++|| .+...+
T Consensus 1 ~~lrvl~G~~~G~~~~L~~g~~~iG~~-~~~~di~L~d~~~~~~h~~l~v~~-~~~~l~~--~~~~~~~~g~~~~~~~g- 75 (410)
T TIGR02500 1 WKLRVLSGPHRGAELPLPEGNLVLGTD-AADCDIVLSDGGIAAVHVSLHVRL-EGVTLAG--AVEPAWEEGGVLPDEEG- 75 (410)
T ss_pred CEEEEecCCCCCcEEECCCCceEeccC-CCCcEEEeCCCCccchheEEEEcC-ceEEEec--CCcceeECCcccccCCC-
Confidence 5789999999999999999999999 8 489999999999999999999874 4577776 467899999 555444
Q ss_pred cEEecCCCEEEEcCeeEEE
Q 014190 179 PVELEVGQSLRFAASTRTY 197 (429)
Q Consensus 179 p~~L~~GD~I~fG~s~r~f 197 (429)
..|..+..|..|...+.|
T Consensus 76 -~~l~~~~~l~~g~~~~~~ 93 (410)
T TIGR02500 76 -TPLPSGTPLLVAGVAFAL 93 (410)
T ss_pred -CccCCCCceecceeEEec
Confidence 456677777777655544
No 13
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=97.38 E-value=0.00044 Score=73.86 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=78.8
Q ss_pred EEEEeCCceeeEEEeCCCcEEEeccCCCCCEEeCC------CCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCC
Q 014190 104 LDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDH------QSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKE 177 (429)
Q Consensus 104 L~V~k~g~~~~~i~L~~~~~~IGRd~~~cDIvLdd------~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~ 177 (429)
|-|+.+... +|.+.++..+|||.+.+|.|-||= ..|||..|.|....+|.|+|..|| ..-.||||..|..+
T Consensus 433 iAvL~Gr~s--kh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~~l~~g 509 (547)
T KOG2293|consen 433 IAVLYGRFS--KHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGGELDRG 509 (547)
T ss_pred eEEEechhh--HhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCccccCC
Confidence 445555443 566777789999987776666532 469999999999878999999997 88899999999999
Q ss_pred CcEEecCCCEEEEcCeeEEEEEecC
Q 014190 178 TPVELEVGQSLRFAASTRTYILRKN 202 (429)
Q Consensus 178 kp~~L~~GD~I~fG~s~r~fil~~~ 202 (429)
..+.|++..+|.|-.-.|+|.+..+
T Consensus 510 q~~~L~~nclveIrg~~FiF~~N~~ 534 (547)
T KOG2293|consen 510 QKVILKNNCLVEIRGLRFIFEINQE 534 (547)
T ss_pred ceEEeccCcEEEEccceEEEeecHH
Confidence 9999999999999998888876653
No 14
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.30 E-value=0.0015 Score=74.46 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=72.6
Q ss_pred EEEEEeCC-ce--eeEEEeCCCcEEEeccCC--CCCEEeCCCCccccceEEEeeeCCe-EEEEECCCCcceEEcCEEccC
Q 014190 103 YLDVLKDG-EI--LDRINLDRRRHIFGRQFQ--TCDFVLDHQSISRQHAAVIPHKNGS-IYVIDLGSAHGTFVANERLTK 176 (429)
Q Consensus 103 ~L~V~k~g-~~--~~~i~L~~~~~~IGRd~~--~cDIvLdd~sVSR~HA~I~~~~~g~-~~L~DLgStNGTfVNG~RL~~ 176 (429)
||+=+..+ .. .-.|.|..+...|||... ..||+|....|--+||.|.-..++. +.|.-. -.--|||||+.|.
T Consensus 456 hLVNLneDPllSe~LlY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk~v~- 533 (1221)
T KOG0245|consen 456 HLVNLNEDPLLSECLLYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGKLVT- 533 (1221)
T ss_pred ceeccCCCchhhccEEEEeccCceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccEEcC-
Confidence 55555433 21 224778888899999422 7899999999999999998654333 455544 3566999999998
Q ss_pred CCcEEecCCCEEEEcCeeEEEEEecCCcc
Q 014190 177 ETPVELEVGQSLRFAASTRTYILRKNTDA 205 (429)
Q Consensus 177 ~kp~~L~~GD~I~fG~s~r~fil~~~~e~ 205 (429)
.+..|++||.|.||. ...|++....++
T Consensus 534 -ep~qL~~GdRiilG~-~H~frfn~P~~a 560 (1221)
T KOG0245|consen 534 -EPTQLRSGDRIILGG-NHVFRFNHPEQA 560 (1221)
T ss_pred -CcceeccCCEEEEcC-ceeEEecCHHHH
Confidence 589999999999998 456777764333
No 15
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=97.01 E-value=0.00071 Score=68.20 Aligned_cols=144 Identities=19% Similarity=0.132 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHhhHhcCCccccccccCCCCCCCCCCCCCCc--hhHHHhhhcccceeeecCCCCeeEEEecccCCCCCC
Q 014190 225 SDEEAVVVYNTLINRYGLSKSDLICRSGEPSRSSIGRDDGQQ--PERAAKRIKKLRVSFRDQAGGELVEVVGISDGADVG 302 (429)
Q Consensus 225 ~dee~l~~~nt~lnr~~i~~~~l~~~s~e~~~~~~~~~~~~~--~~~~~k~~~~~~v~f~~~~g~~~~e~i~~~~~~dv~ 302 (429)
..-+-.+..|+...-.++.-. -+++|...-. .-+..++.++.+|.|.++.+..+.++.||++.++|.
T Consensus 150 ~~~~~nt~~n~~is~~~~~~g-----------~~~~q~~~kk~~~~~~vtf~~~~~iinpeqvdp~v~rfrnmvqtavvp 218 (337)
T KOG1880|consen 150 NLTEYNTAHNRRISSLGISGG-----------NMLIQRKEKKGSNARVVTFMKKVRVINPEQVDPNVARFRNMVQTAVVP 218 (337)
T ss_pred HHHHHHHhhhhhheeeeeccC-----------cchhhhhhhhcccccceeeeccceeeCHhhcCchhhhhhcCccccccc
Confidence 334455666776666655322 2333333221 112246678999999999999999999999999999
Q ss_pred CCCCCccCcCCCcceeecceEEEEEecCCCCCCCccccC-CCCccchhHHHHHHhh-ccCCCCCCCCCCCCC-CC-cc-c
Q 014190 303 TEPGPIGMKEGSLVGKYESLVQTTVIPKCKEKPSQKEEN-FLPKGVTDKLQEVLNK-VKSGPKSRIYDDLYG-DS-FS-G 377 (429)
Q Consensus 303 ~~~~~~~~~~g~~vg~~~~~~q~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~-~~-~~-~ 377 (429)
+|..++.+ +|.+++.+++.+.+..++..+-...+.... .++.|.+++++++++. |... -|||.++|+ +. +. .
T Consensus 219 ~e~~rv~~-~Gsl~l~ee~~~r~~q~f~~s~gl~~~~pp~hs~~gs~~~p~~ihgt~L~~g--lg~~~pn~apDvpv~~k 295 (337)
T KOG1880|consen 219 VEKKRVEV-PGSLGLEEESGVRVMQNFAFSVGLYGGLPPTHSPGGSQDRPHEIHGTPLSGG--LGMPYPNLAPDVPLYPK 295 (337)
T ss_pred cccccccc-CCcccccccccceeecccccccceecccCCCCCCCCcccChhhhhccccccC--CCCCCCCCCCCcccchh
Confidence 99999999 999999999999999988877666555444 6788999999999883 3333 455555554 44 22 3
Q ss_pred ccccc
Q 014190 378 KVGSS 382 (429)
Q Consensus 378 ~~~~~ 382 (429)
.|+.+
T Consensus 296 aV~~~ 300 (337)
T KOG1880|consen 296 AVNTS 300 (337)
T ss_pred hcCCC
Confidence 45665
No 16
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.65 E-value=0.0044 Score=70.27 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=75.2
Q ss_pred ccEEEEEEeCCcee-eEEEeCCCcEEEeccCC-CCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCC
Q 014190 100 SVYYLDVLKDGEIL-DRINLDRRRHIFGRQFQ-TCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKE 177 (429)
Q Consensus 100 ~~~~L~V~k~g~~~-~~i~L~~~~~~IGRd~~-~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~ 177 (429)
.++.+++..+|... ++|.|.....-+|.+.. ++.|.|..|.|-.+||.|..- .|.+.|..+---.-|||||.+|..
T Consensus 356 lPvLve~s~dG~~s~~ri~L~~~vtEVGs~~~~~~~iqLfGP~IqprHc~it~m-eGVvTvTP~~~DA~t~VnGh~isq- 433 (1629)
T KOG1892|consen 356 LPVLVELSPDGSDSRKRIRLQLSVTEVGSEKLDDNSIQLFGPGIQPRHCDITNM-EGVVTVTPRSMDAETYVNGHRISQ- 433 (1629)
T ss_pred CcEEEEEcCCCCCcceeEEeccCceeccccccCCcceeeeCCCCCccccchhhc-cceEEecccccchhhhccceecch-
Confidence 34445555555554 68999998899999532 346888999999999999864 678888887545679999999994
Q ss_pred CcEEecCCCEEEEcCeeEEEEEec
Q 014190 178 TPVELEVGQSLRFAASTRTYILRK 201 (429)
Q Consensus 178 kp~~L~~GD~I~fG~s~r~fil~~ 201 (429)
+..|++|+.|+||.+. .|+|.+
T Consensus 434 -ttiL~~G~~v~fGa~h-sfkF~d 455 (1629)
T KOG1892|consen 434 -TTILQSGMKVQFGASH-SFKFVD 455 (1629)
T ss_pred -hhhhccCCEEEeccce-eEEecC
Confidence 7899999999999843 344444
No 17
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.54 E-value=0.092 Score=57.12 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=67.5
Q ss_pred eEEEeCCCcEEEeccCCCCCEEeCCCCccccceEEEeeeC-CeEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcC
Q 014190 114 DRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKN-GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAA 192 (429)
Q Consensus 114 ~~i~L~~~~~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~-g~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~ 192 (429)
..|+|..+..+|||. +.. .|.|..|||+...+..+-+ +.+.+.-|| .|-+-|||..|.++..+.|++||++.|=.
T Consensus 25 ~~~~~~~~~~~~gr~-pet--~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~~~~~~~~~~l~~g~~l~~v~ 100 (526)
T TIGR01663 25 HFIHLDAGALFLGRG-PET--GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGLELKPGGEGELGHGDLLEIVN 100 (526)
T ss_pred CeeccCCCceEEccC-ccc--ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCceEecCCCeeeecCCCEEEEec
Confidence 468888777899994 544 4569999999999987655 456667897 79999999999999999999999999866
Q ss_pred eeEEEEEec
Q 014190 193 STRTYILRK 201 (429)
Q Consensus 193 s~r~fil~~ 201 (429)
-..-|.+..
T Consensus 101 ~~~~~~~~f 109 (526)
T TIGR01663 101 GLHPLTLQF 109 (526)
T ss_pred cccceeEEe
Confidence 555554444
No 18
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.16 E-value=0.83 Score=52.84 Aligned_cols=75 Identities=15% Similarity=0.246 Sum_probs=62.5
Q ss_pred cEEEeccCCCCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcCeeEEEEEec
Q 014190 122 RHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRK 201 (429)
Q Consensus 122 ~~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r~fil~~ 201 (429)
..+||- ...-||++..-.|-++||+|-+..+|.+++..+-. .-+||||..+.. +.+|.+||.|-.|...+ |++..
T Consensus 468 ~tlig~-~~~~~i~l~glgi~p~h~vidI~~dg~l~~~p~~~-~R~~VNGs~v~~--~t~L~~GdRiLwGnnHF-FrvN~ 542 (1714)
T KOG0241|consen 468 HTLIGL-FKSQDIQLSGLGIQPKHCVIDIESDGELRLTPLLN-ARSCVNGSLVCS--TTQLWHGDRILWGNNHF-FRVNL 542 (1714)
T ss_pred ceeecc-ccCcceeeecCcccCccceeeeccCCcEEeccccc-ceeeecCceecc--ccccccCceEEecccce-EEecC
Confidence 368887 48999999999999999999998888889988854 489999998874 68999999999998654 44443
No 19
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=85.00 E-value=3.2 Score=43.94 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=61.5
Q ss_pred cEEEEEEeCCceeeEEEeCCCcEEEeccCCCCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCcE
Q 014190 101 VYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPV 180 (429)
Q Consensus 101 ~~~L~V~k~g~~~~~i~L~~~~~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp~ 180 (429)
.|+|..+.+...++++.|..+.+++|-. .|||++.=+. ..-..+...+ +.++|.- +.--++|||.|-..+.+
T Consensus 4 ~~Klr~Lng~L~GrEl~Lp~G~~tlG~~--gcDi~lpL~~--~~~~~L~i~e-~gi~l~~--~~~~vwVnG~~~~~~~~- 75 (395)
T PRK15367 4 SWKIRFLGHVLQGREVWLNEGNLSLGEK--GCDICIPLTI--NEKIILREQA-DSLFVDA--GKARVRVNGRRFNPNKP- 75 (395)
T ss_pred ceeeeecCCcccCcEEecCCCceeecCC--CceEEEECCC--CCEEEEEEcC-CcEEEec--CCceEEECCEEcCCCCC-
Confidence 4899999999999999999999999994 6999986543 2223344443 3466631 13458999999876655
Q ss_pred EecCCCEEEEcCeeEE
Q 014190 181 ELEVGQSLRFAASTRT 196 (429)
Q Consensus 181 ~L~~GD~I~fG~s~r~ 196 (429)
|.-+.+|.+....+.
T Consensus 76 -LPl~q~Ie~aG~~~v 90 (395)
T PRK15367 76 -LPSSGVLQVAGVAIA 90 (395)
T ss_pred -CCCcchhhhcceEEE
Confidence 666777777664433
No 20
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=53.01 E-value=11 Score=42.20 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=51.3
Q ss_pred CCCCccccceEEEeeeC-CeEEEEECCCCcceEEcCEEccCCC---cEEecCCCEEEEcCeeEEEEEecC
Q 014190 137 DHQSISRQHAAVIPHKN-GSIYVIDLGSAHGTFVANERLTKET---PVELEVGQSLRFAASTRTYILRKN 202 (429)
Q Consensus 137 dd~sVSR~HA~I~~~~~-g~~~L~DLgStNGTfVNG~RL~~~k---p~~L~~GD~I~fG~s~r~fil~~~ 202 (429)
....++|.|+.|.++.. +.|++.+.| .||..|+|+++.-+- ...|..|..+..+.....|++-.-
T Consensus 123 ~~k~~~~~~~sIr~Nls~~~a~~~i~g-~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~~~~~~~~~p~~ 191 (610)
T COG5025 123 YAKVVSRWQNSIRHNLSLNDAFIKIEG-RNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPSS 191 (610)
T ss_pred cccccchhhhhhhcccccCceEEEEec-cCCccccceeeccCCCccceeeccccccccccccccccCccc
Confidence 34678999999987654 679999997 799999999876433 688999999888887777776654
No 21
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=36.30 E-value=37 Score=25.81 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=19.4
Q ss_pred cceEEcCEEccCCCcEEecCCCEEEE
Q 014190 165 HGTFVANERLTKETPVELEVGQSLRF 190 (429)
Q Consensus 165 NGTfVNG~RL~~~kp~~L~~GD~I~f 190 (429)
...+|||+.+.. ..+.|..||+|.|
T Consensus 34 G~V~VNg~~~~~-~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENR-RGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccC-CCCCCCCCCEEEe
Confidence 557899998743 3478999999976
No 22
>smart00363 S4 S4 RNA-binding domain.
Probab=34.05 E-value=63 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=20.3
Q ss_pred CcceEEcCEEccCCCcEEecCCCEEEEcC
Q 014190 164 AHGTFVANERLTKETPVELEVGQSLRFAA 192 (429)
Q Consensus 164 tNGTfVNG~RL~~~kp~~L~~GD~I~fG~ 192 (429)
.++.+|||+++.. ....|..||.|.+-.
T Consensus 25 ~g~i~vng~~~~~-~~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGKKVTK-PSYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCEEecC-CCeEeCCCCEEEEcc
Confidence 3468899998832 246789999988754
No 23
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=32.56 E-value=38 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=17.4
Q ss_pred cceEEcCEEccCCCcEEecCCCEEEEcCeeE
Q 014190 165 HGTFVANERLTKETPVELEVGQSLRFAASTR 195 (429)
Q Consensus 165 NGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r 195 (429)
+..+|||+.... +...|.+||+|.|+....
T Consensus 33 g~V~VNGe~e~r-rg~Kl~~GD~V~~~~~~~ 62 (65)
T PF13275_consen 33 GEVKVNGEVETR-RGKKLRPGDVVEIDGEEY 62 (65)
T ss_dssp HHHEETTB-----SS----SSEEEEETTEEE
T ss_pred CceEECCEEccc-cCCcCCCCCEEEECCEEE
Confidence 568899986554 568899999999976443
No 24
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=30.15 E-value=71 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=24.5
Q ss_pred eEEcCEEccCCCcEEecCCCEEEEc--CeeEEEEEecC
Q 014190 167 TFVANERLTKETPVELEVGQSLRFA--ASTRTYILRKN 202 (429)
Q Consensus 167 TfVNG~RL~~~kp~~L~~GD~I~fG--~s~r~fil~~~ 202 (429)
..|||.+..+. ..++.||+|.|. .-.+.|.+...
T Consensus 36 V~vNG~~aKpS--~~VK~GD~l~i~~~~~~~~v~Vl~~ 71 (100)
T COG1188 36 VKVNGQRAKPS--KEVKVGDILTIRFGNKEFTVKVLAL 71 (100)
T ss_pred EEECCEEcccc--cccCCCCEEEEEeCCcEEEEEEEec
Confidence 56899999764 688899976655 45566666654
No 25
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=29.99 E-value=97 Score=25.65 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=23.9
Q ss_pred CcceEEcCEEccCCCcEEecCCCEEEEcCee
Q 014190 164 AHGTFVANERLTKETPVELEVGQSLRFAAST 194 (429)
Q Consensus 164 tNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~ 194 (429)
-|..+|||+.-.. +-..|.+||+|.|.+..
T Consensus 36 eg~V~vNGe~EtR-RgkKlr~gd~V~i~~~~ 65 (73)
T COG2501 36 EGEVKVNGEVETR-RGKKLRDGDVVEIPGQR 65 (73)
T ss_pred CCeEEECCeeeec-cCCEeecCCEEEECCEE
Confidence 3679999986654 56789999999999844
No 26
>PRK11507 ribosome-associated protein; Provisional
Probab=29.25 E-value=93 Score=25.51 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=22.6
Q ss_pred cceEEcCEEccCCCcEEecCCCEEEEcCee
Q 014190 165 HGTFVANERLTKETPVELEVGQSLRFAAST 194 (429)
Q Consensus 165 NGTfVNG~RL~~~kp~~L~~GD~I~fG~s~ 194 (429)
+...|||+.-.. +-..|.+||+|.|....
T Consensus 37 g~V~VNGeve~r-RgkKl~~GD~V~~~g~~ 65 (70)
T PRK11507 37 GQVKVDGAVETR-KRCKIVAGQTVSFAGHS 65 (70)
T ss_pred CceEECCEEecc-cCCCCCCCCEEEECCEE
Confidence 568899974443 55789999999999844
No 27
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=28.64 E-value=1.3e+02 Score=30.48 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=29.2
Q ss_pred CCCcceEEcCEEccCCCcEEecCCCEEEEcCe---eEEEEE
Q 014190 162 GSAHGTFVANERLTKETPVELEVGQSLRFAAS---TRTYIL 199 (429)
Q Consensus 162 gStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s---~r~fil 199 (429)
|-.-...|||+++...+.+.++.||+|+||.. .|.|.-
T Consensus 52 GA~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~YLA 92 (280)
T smart00797 52 GADFPATLDGQPVPPWKPFLVRAGQVLSLGAPKAGARAYLA 92 (280)
T ss_pred CCCCeeeECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEE
Confidence 33445668999999888999999999999963 355543
No 28
>PRK01777 hypothetical protein; Validated
Probab=28.10 E-value=57 Score=27.93 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=23.4
Q ss_pred EECCCCcceEEcCEEccCCCcEEecCCCEEEEc
Q 014190 159 IDLGSAHGTFVANERLTKETPVELEVGQSLRFA 191 (429)
Q Consensus 159 ~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG 191 (429)
+|+ +.+-..|||+.+..+ ..|++||.|.|=
T Consensus 45 i~~-~~~~vgI~Gk~v~~d--~~L~dGDRVeIy 74 (95)
T PRK01777 45 IDL-AKNKVGIYSRPAKLT--DVLRDGDRVEIY 74 (95)
T ss_pred ccc-ccceEEEeCeECCCC--CcCCCCCEEEEe
Confidence 356 567788999988753 689999998763
No 29
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=27.87 E-value=56 Score=26.46 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=17.7
Q ss_pred ceEEcCEEccCCCcEEecCCCEEEE
Q 014190 166 GTFVANERLTKETPVELEVGQSLRF 190 (429)
Q Consensus 166 GTfVNG~RL~~~kp~~L~~GD~I~f 190 (429)
-.+||++.+......+|++||+|.|
T Consensus 57 ~v~vN~~~v~~~~~~~l~dgdev~i 81 (88)
T TIGR01687 57 IILVNGRNVDWGLGTELKDGDVVAI 81 (88)
T ss_pred EEEECCEecCccCCCCCCCCCEEEE
Confidence 3566777776543357999999876
No 30
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=27.22 E-value=47 Score=23.86 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=18.2
Q ss_pred CcceEEcCEEccCCCcEEecCCCEE
Q 014190 164 AHGTFVANERLTKETPVELEVGQSL 188 (429)
Q Consensus 164 tNGTfVNG~RL~~~kp~~L~~GD~I 188 (429)
.++.+|||+.+.. .-+.++.||+|
T Consensus 25 ~g~V~VNg~~v~~-~~~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGKVVKD-PSYIVKPGDVI 48 (48)
T ss_dssp TTTEEETTEEESS-TTSBESTTEEE
T ss_pred CCEEEECCEEEcC-CCCCCCCcCCC
Confidence 3678999999983 23678888876
No 31
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=26.82 E-value=1.5e+02 Score=30.75 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=38.7
Q ss_pred cceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcCe---eEEEEEe
Q 014190 144 QHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAAS---TRTYILR 200 (429)
Q Consensus 144 ~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s---~r~fil~ 200 (429)
....|.++.+.-+-|. |-.-.-.|||+.+....++.++.||+|+||.. .|.|.-.
T Consensus 57 ~g~t~~f~~~~~ialT--Gad~~a~ld~~~i~~~~~~~vk~Gq~L~~g~~~~G~R~YLav 114 (314)
T COG1984 57 GGPTLEFTSDALIALT--GADCEATLDGQEVPPWSPYLVKAGQTLKLGRPKQGMRAYLAV 114 (314)
T ss_pred CCeEEEEecCcEEEEe--CCcccceECCEEcCCCceEEccCCCEEEecCCCCcceEEEEe
Confidence 3445666644423333 44556789999999999999999999999974 3555433
No 32
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=26.15 E-value=53 Score=27.78 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.1
Q ss_pred eEEcCEEcc--CCCcEEecCCCEEEEc
Q 014190 167 TFVANERLT--KETPVELEVGQSLRFA 191 (429)
Q Consensus 167 TfVNG~RL~--~~kp~~L~~GD~I~fG 191 (429)
.+|||+.+. .+..++|++||+|.|=
T Consensus 62 VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 62 VLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred EEECCccccccCCcccCCCCcCEEEEE
Confidence 567887764 4456899999999873
No 33
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=24.93 E-value=73 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.2
Q ss_pred cceEEcCEEccCCCcEEecCCCEEEE
Q 014190 165 HGTFVANERLTKETPVELEVGQSLRF 190 (429)
Q Consensus 165 NGTfVNG~RL~~~kp~~L~~GD~I~f 190 (429)
.-.+|||+.+. .-..|++||+|.|
T Consensus 50 ~~v~vNg~~v~--~~~~l~~gD~v~i 73 (80)
T cd00754 50 VRIAVNGEYVR--LDTPLKDGDEVAI 73 (80)
T ss_pred EEEEECCeEcC--CCcccCCCCEEEE
Confidence 34677887776 3478999999987
No 34
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=24.47 E-value=1.1e+02 Score=30.96 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=28.0
Q ss_pred CCCcceEEcCEEccCCCcEEecCCCEEEEcCe---eEEEEEe
Q 014190 162 GSAHGTFVANERLTKETPVELEVGQSLRFAAS---TRTYILR 200 (429)
Q Consensus 162 gStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s---~r~fil~ 200 (429)
|..-...|||+++...+.+.++.||+|+||.. .|.|.-.
T Consensus 52 Ga~~~~~lng~~~~~~~~~~v~~Gd~L~~~~~~~G~r~YLAv 93 (271)
T PF02626_consen 52 GADFEATLNGKPVPMWQPFLVKAGDVLKFGPPRSGARAYLAV 93 (271)
T ss_dssp ESCEEEEETTEEE-TTSEEEE-TT-EEEEEEESSECEEEEEE
T ss_pred CCCCceEECCEEccCCEEEEECCCCEEEecCCCCccEEEEEe
Confidence 44556778999999999999999999999974 3555433
No 35
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=23.88 E-value=61 Score=25.43 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=12.2
Q ss_pred EEcCEEccCC-CcEEecCCCEEEE
Q 014190 168 FVANERLTKE-TPVELEVGQSLRF 190 (429)
Q Consensus 168 fVNG~RL~~~-kp~~L~~GD~I~f 190 (429)
+|||+....+ ..+.|++||.|.|
T Consensus 44 ~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 44 YVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EETTEE-SS-CCC-B--TTEEEEE
T ss_pred EECCEEhhcCcceeEeCCCCEEEe
Confidence 3566655433 2578999999987
No 36
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=22.45 E-value=1.7e+02 Score=24.45 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=28.8
Q ss_pred CCcceEEcCEEccCCCcEEecCCC--EEEEcCeeEEEEEecCC
Q 014190 163 SAHGTFVANERLTKETPVELEVGQ--SLRFAASTRTYILRKNT 203 (429)
Q Consensus 163 StNGTfVNG~RL~~~kp~~L~~GD--~I~fG~s~r~fil~~~~ 203 (429)
+..|.|+||+.|.- .-=-+|. .++.|...+.|.+....
T Consensus 22 ~~~GV~~ngrlV~T---~F~fDG~~l~~~~G~~~~~y~~~~~~ 61 (79)
T PF11012_consen 22 NESGVFRNGRLVAT---SFEFDGKTLEYRTGSGTYRYQISGEN 61 (79)
T ss_pred CCCcEEECCCEEee---EEEECCCEEEEEECCeEEEEEEcCCC
Confidence 57999999998884 2334677 45568889999998863
No 37
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=20.80 E-value=1.9e+02 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=27.0
Q ss_pred CCCCcceEEcCEEccC-CCcEEecCCCEEEEcCe
Q 014190 161 LGSAHGTFVANERLTK-ETPVELEVGQSLRFAAS 193 (429)
Q Consensus 161 LgStNGTfVNG~RL~~-~kp~~L~~GD~I~fG~s 193 (429)
.|-.-...|||+++.. .+.+.++.||+|+||..
T Consensus 73 tGA~~~~~lng~~~~~~~~~~~v~~Gd~L~~g~~ 106 (314)
T TIGR00724 73 TGADTDLCLNDGQVIPQWRPYEVKRGQILSLGRL 106 (314)
T ss_pred eCCCCcceeCCcccCCCceEEEECCCCEEEeCCC
Confidence 3455678899999876 67899999999999964
No 38
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=20.74 E-value=31 Score=39.42 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=54.5
Q ss_pred EEEeccCCCCCEEeCCCCccccceEEEeeeCC-eEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcCeeEEE
Q 014190 123 HIFGRQFQTCDFVLDHQSISRQHAAVIPHKNG-SIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTY 197 (429)
Q Consensus 123 ~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g-~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r~f 197 (429)
.++|| ...|.+.+.|++.|+.|+-|.-.-.. ....-+.-+.++|.|-..+.+++.-..-..++.++++.++++|
T Consensus 62 lvvG~-~~~~~~l~~hpS~S~~~~~~~S~p~~~~~~~p~s~e~~~s~v~d~p~P~~Gc~D~~el~e~~~~~t~kis 136 (793)
T KOG1881|consen 62 LVVGD-FKDCAELLEHPSESDAAADEFSIPAPHPKPAPDAPEKHRSEVPDEPPPPEGCGDDEELAEAQIPKTPKIS 136 (793)
T ss_pred cCCCC-CCcccccCCCcccccccccCcCCCcccCCCCCCchhhcCCCCccCCCCCCCccccccccccccCCCcccc
Confidence 36888 69999999999999999998643221 1122234456778887777776556677778899999998888
No 39
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=20.60 E-value=1.2e+02 Score=21.83 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=20.5
Q ss_pred CcceEEcCEEccCCCcEEecCCCEEEEcC
Q 014190 164 AHGTFVANERLTKETPVELEVGQSLRFAA 192 (429)
Q Consensus 164 tNGTfVNG~RL~~~kp~~L~~GD~I~fG~ 192 (429)
.++.+|||+++.. ....+..||+|.+..
T Consensus 25 ~g~V~vn~~~~~~-~~~~v~~~d~i~i~~ 52 (70)
T cd00165 25 HGHVLVNGKVVTK-PSYKVKPGDVIEVDG 52 (70)
T ss_pred cCCEEECCEEccC-CccCcCCCCEEEEcC
Confidence 4578899998832 236788899888864
Done!