BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014192
         (429 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4D0V7|CPED1_HUMAN Cadherin-like and PC-esterase domain-containing protein 1 OS=Homo
           sapiens GN=CPED1 PE=2 SV=1
          Length = 1026

 Score = 37.0 bits (84), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 103 DTEFMNWR---WKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLL 151
           D    +WR   W+PH C+  +    Q  + + G+ + F+GDS  R  M  L+
Sbjct: 736 DNRTCDWREITWQPHNCQYGVLTKPQLQQCLGGRKILFIGDSTNRGIMYYLI 787


>sp|B2MW49|L_LATVB RNA-directed RNA polymerase L OS=Latino virus (isolate
            Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1
          Length = 2238

 Score = 34.7 bits (78), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 48   SSARINVGELRSMVLEKHCDIFSGEWVPNPKGPYYSNESC--RLIIDQQNCMKFGRPDTE 105
            S+  + VG+L + ++ +  + FS   V N      +NE+   + I D + C+  G     
Sbjct: 1143 SNRELYVGDLNTKLMTRLIEDFSESVVSNMSYSCLNNEAEFEKAITDMKMCVNLGDMSLS 1202

Query: 106  FMNWRWKPHECELPLFNPVQFLEIVRGKSLAFVGDSVGRNQMESLLCLLASYMLQEAN-P 164
              + +W PH       +PV F   ++G  L + G S+ +   + ++ LL+ ++ +    P
Sbjct: 1203 LDHSKWGPH------MSPVIFAAFLQGLDLKY-GPSLCKLNTDPIITLLSWHIHKVVEVP 1255

Query: 165  EDISHKYTS 173
             ++ H Y +
Sbjct: 1256 YNVIHAYVT 1264


>sp|Q28DZ1|IKKA_XENTR Inhibitor of nuclear factor kappa-B kinase subunit alpha OS=Xenopus
           tropicalis GN=chuk PE=2 SV=1
          Length = 743

 Score = 34.3 bits (77), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 212 NNLMNLYLDEADESWVSQIENFDYVIISAGQWFFRPLVYYANGQPVGCHNCNINNMTALT 271
           NNL ++ +D+  E+W+  + N+D +    G    RP  +    Q +     +I NMT+  
Sbjct: 262 NNLCSIIVDKI-ETWLQLLLNWDPIQRGGGMDCGRPQCFVLMDQILNLKIVHILNMTS-A 319

Query: 272 KYHAYRMAFRTAFRTLQ-RLKNYKGIT 297
           K H++ +    +  TLQ R++   GI+
Sbjct: 320 KIHSFHLQPEESLHTLQSRIETETGIS 346


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,503,803
Number of Sequences: 539616
Number of extensions: 6863169
Number of successful extensions: 12779
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12777
Number of HSP's gapped (non-prelim): 5
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)