Your job contains 1 sequence.
>014193
MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP
TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF
LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL
AENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK
ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG
REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ
EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFK
FYVFSSLNA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014193
(429 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 702 3.0e-69 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 499 9.8e-48 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 413 1.3e-38 1
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 258 1.4e-27 2
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 307 6.6e-27 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 275 5.3e-24 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 269 2.3e-23 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 268 2.9e-23 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 262 1.3e-22 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 260 2.1e-22 1
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 259 2.6e-22 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 266 6.5e-21 1
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 263 1.1e-20 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 255 2.0e-20 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 250 9.5e-20 1
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 244 1.3e-19 3
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 251 4.3e-19 1
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 249 1.1e-18 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 231 1.2e-18 2
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 234 2.2e-18 2
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 234 3.4e-18 2
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 243 7.5e-18 1
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 241 1.1e-17 1
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 241 1.1e-17 1
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 233 1.6e-17 2
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 228 2.0e-17 2
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 229 2.5e-17 2
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 233 2.5e-17 2
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 229 9.2e-17 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 224 8.4e-16 1
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 193 2.4e-13 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 189 7.5e-13 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 189 7.5e-13 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 188 1.0e-12 1
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 191 4.0e-12 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 181 7.6e-12 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 188 8.2e-12 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 176 3.3e-11 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 174 5.7e-11 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 171 1.5e-10 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 170 1.9e-10 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 161 2.2e-09 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 160 3.3e-09 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 152 1.6e-08 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 153 2.1e-08 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 141 2.0e-07 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 142 2.4e-07 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 140 3.0e-07 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 138 5.0e-07 1
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 127 1.0e-05 1
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 124 3.0e-05 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 115 0.00031 1
UNIPROTKB|Q7D5S2 - symbol:sigF "Alternative RNA polymeras... 113 0.00057 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 112 0.00069 1
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 162/335 (48%), Positives = 208/335 (62%)
Query: 85 SQATSDSRNIETEAFFVEEKNSGDLDQLVQD--LEHQFLHWPDLWNL--SPPMKRGEDPS 140
S A D R T +E + +L +D E Q LH LWNL SP + P+
Sbjct: 71 SHALRDDR---TSQLTLERRQFDELVSSREDEKFEQQLLHSTGLWNLLISPLTSETKLPA 127
Query: 141 VSLTMQSLSNDTEESVDAEPFDXXXXXXXXXXXXXXXXXXXXNPKLNGAE-FTD-ISLTS 198
V + L+ DAE D + + N ++ D +S +S
Sbjct: 128 V---VSPLA-------DAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSS 177
Query: 199 SLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLR 258
S+ P E+ R LERR+K R+ K + E Y +K S KKK +G D +D L+
Sbjct: 178 SMSLP-EKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQ 236
Query: 259 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 318
LFLWGPET++LLTA EE ELI+ IQ L++LEK K+KL+SQ G EPT+ EWA+A+G+S
Sbjct: 237 LFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPV 296
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
LKS++H G SSREKLI ANLRLVVH+AKQYQ RG++ DLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 297 LKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 356
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
CRFA+YAYWW+RQ+IRK+IFQ+SRTIRLP + L
Sbjct: 357 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYML 391
Score = 181 (68.8 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 49/143 (34%), Positives = 67/143 (46%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHXXXXXXXXXXXXXVLMHNEQXXXXXXXXXXXXXXRHFP 60
MEA RNL+SS PSF ++T +K V++H++ RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVL QE R+E RPL H ++D+TSQ T + R + V + + E Q
Sbjct: 56 ASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDE---LVSSRED-------EKFEQQL 105
Query: 121 LHWPDLWNL--SPPMKRGEDPSV 141
LH LWNL SP + P+V
Sbjct: 106 LHSTGLWNLLISPLTSETKLPAV 128
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 94/202 (46%), Positives = 138/202 (68%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 216 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 275
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S ++L+S + +G RE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
K+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 392 TIRKAIFQHSRTIRLPVMTFNL 413
+I+K+IF++SR IRLP + L
Sbjct: 396 SIKKSIFKNSRLIRLPESVYAL 417
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 78/195 (40%), Positives = 125/195 (64%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 393 IRKAIFQHSRTIRLP 407
+RK++ SR IRLP
Sbjct: 396 VRKSLSDQSRMIRLP 410
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 258 (95.9 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 47/93 (50%), Positives = 71/93 (76%)
Query: 317 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L + G+ ++R+K+I +NLRLVV +AK+Y RG+ DL++EG+MGL+K+VE+FK
Sbjct: 79 KELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKL 138
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
CRF++YA WW+RQ+I +A+ SRTIRLPV
Sbjct: 139 SKECRFSTYATWWIRQSIERALVNQSRTIRLPV 171
Score = 66 (28.3 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 229 QVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 282
+ E A V K + E FD D ++L+L + +LLTADEE EL +I
Sbjct: 33 EAAEEEEEPEEPAEVGKNIEQEHFD--DAIKLYLREIQRTRLLTADEEKELAGRI 85
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 307 (113.1 bits), Expect = 6.6e-27, P = 6.6e-27
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 205 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 264
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 265 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 324
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ ++S+T RLP
Sbjct: 325 GFRISTYVYWWIRQGVSRALAENSKTFRLP 354
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 59/152 (38%), Positives = 96/152 (63%)
Query: 270 LTAD--EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
+ AD +E L Q+QD ++ + ++L + G P L+ + + S + LK
Sbjct: 29 IAADLVQELGLEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVYFSRKALKG----C 83
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA
Sbjct: 84 EKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 143
Query: 387 WWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 WWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 63/174 (36%), Positives = 102/174 (58%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
E FD D L ET LT+DEE + + +R E + S +S + L E
Sbjct: 11 EEFDFEDEALEVL---ETDAELTSDEELVAVEGASEDVREEFDASA-KSLDATQMYLSEI 66
Query: 309 AKAIGLSCRD----LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
+ L+ + + L ++R+++I +NLRLVV ++++Y RG++L DL++EG++
Sbjct: 67 GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNL 126
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
GL+++VEKF P+ G RF++YA WW+RQTI +A+ +RTIRLP+ IY+
Sbjct: 127 GLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYL 180
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 71/204 (34%), Positives = 114/204 (55%)
Query: 223 RKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 282
+K+ KP + + + K S KK + D +F +T+K T E+ EL A
Sbjct: 15 KKIKKP--SKRKIKKTAKKSRPKKPIKASDHG---LIFA---KTKKETTEKEDAEL-ANA 65
Query: 283 QDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSEL------HSGN-SSREKLI 334
+ K K + +++ +PT I + + +G + K EL H G+ +R+++I
Sbjct: 66 K-----AKTKKRRETR-SSDPTQI-YLRELGFQPLLNAKEELKIARRVHKGDPKARKQMI 118
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394
ANLRLVV +A+ Y RG+ DL++EG++GL+ +VEKF P+ G RF++YA WW+RQTI
Sbjct: 119 EANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIE 178
Query: 395 KAIFQHSRTIRLPVMTFNLSPIYI 418
+AI SRT+RLP+ +Y+
Sbjct: 179 RAIMNQSRTVRLPIHVIKELNVYL 202
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 47/96 (48%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR+++I +NLRLVV +A++Y RG+ L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 50 LKGDEPSRKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFS 109
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 110 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYL 145
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 56/144 (38%), Positives = 93/144 (64%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E EL++Q L+ + L + G P L+ + + + R L+ ++ +SR ++I
Sbjct: 42 EEELLSQGATQRVLDATQLYL-GEIGYSP-LLTAEEEVYFARRALRGDV----ASRRRMI 95
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394
+NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI
Sbjct: 96 ESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE 155
Query: 395 KAIFQHSRTIRLPVMTFNLSPIYI 418
+AI +RTIRLP+ +Y+
Sbjct: 156 RAIMNQTRTIRLPIHIVKELNVYL 179
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 51/105 (48%), Positives = 75/105 (71%)
Query: 305 LIEWAKAIGLSC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 363
L+E K +G + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG+
Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
Query: 364 MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+GL++++EKF G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 266 (98.7 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 76/230 (33%), Positives = 125/230 (54%)
Query: 193 DISLTSSLGYPLEEVKQFSQPR---FLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSE 249
D+ L ++L LEE + R ER+ K K+++ VT+ + A + ++L E
Sbjct: 192 DVRL-AALNAELEEESLSASRRQELLAERQELKEKLAE-MVTSLRLKDRHIAKIAQRLKE 249
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQ--IQDLIRLEKEKSKLQSQFGR--EPTL 305
+ D + + E ++AD E+ A + I+L E ++ + R E L
Sbjct: 250 LSAKVDTIMAEIAAIEKEAGVSADTLKEIAASEAVGKGIKLSLEDAQKHEKKVRSAEKKL 309
Query: 306 IEWAKAIGLSCRDLKSELHS---GNS----SREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ + G R+L L + G + ++ +L+ ANLRLVV +AK+Y RG+ DL
Sbjct: 310 KKVEEESGFKARELSDALRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTNRGLQFLDL 369
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+QEG++GLMK+V+KF+ Q G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 370 IQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPV 419
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 263 (97.6 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 53/151 (35%), Positives = 96/151 (63%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q G +GL++ +EKF
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSS 306
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +SRT+RLP
Sbjct: 307 KGFRISTYVYWWIRQGVSRALVDNSRTLRLP 337
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 255 (94.8 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 57/148 (38%), Positives = 89/148 (60%)
Query: 263 GPETRKLLTADEEFELI-AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
GP ++ +EEF+L + +++ + GR L+ + I L+ R
Sbjct: 74 GPNNHQITKTEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVD-LLSAEEEIRLATR---- 128
Query: 322 ELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ G+ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+VEKF + G +
Sbjct: 129 -IEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFK 187
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPV 215
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 250 (93.1 bits), Expect = 9.5e-20, P = 9.5e-20
Identities = 57/135 (42%), Positives = 83/135 (61%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
+E +L I + I ++ + GR P L + I L+ R K E ++ KL
Sbjct: 83 DEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTP-EEEIELAKR--KEE--GDEEAKRKL 137
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+VEKF + G +F++YA WW+RQ I
Sbjct: 138 AEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAI 197
Query: 394 RKAIFQHSRTIRLPV 408
+AI +RTIR+PV
Sbjct: 198 TRAIADQARTIRIPV 212
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 244 (91.0 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 44/84 (52%), Positives = 65/84 (77%)
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F++Y
Sbjct: 386 TANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTY 445
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
A WWVRQ I +AI +RTIR+PV
Sbjct: 446 ATWWVRQAITRAIADQARTIRIPV 469
Score = 47 (21.6 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
+DP+R++L + +LL+ + E E+ +I+
Sbjct: 96 DDPIRMYLCEMSSVELLSREGEIEIAKRIK 125
Score = 40 (19.1 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 137 EDPSVSLTMQSLSNDTEESVDAE 159
+D +S+ QS +DT+++V E
Sbjct: 53 QDSGISVLEQSDVDDTDDTVTGE 75
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 251 (93.4 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 59/154 (38%), Positives = 95/154 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A+EE EL +I+ + + ++L S+ G + + + +
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEL-SERGEKLPAAQRRDMMWI 284
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+++VEKF
Sbjct: 285 -CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +A+ +RTIR+PV
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 370
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 249 (92.7 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 64/161 (39%), Positives = 95/161 (59%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S G R D L + +K T+ + ++ + I K KL S G E L E
Sbjct: 311 SYGIQRKDFLDAYNTNSVLQKKGTSPQWDNMLLNEESNIVSMYSKIKLLS--G-ENNLTE 367
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+ KA+ + K E + N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLM
Sbjct: 368 F-KALVTKIQ--KHE-RAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLM 423
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
K+V+KF + G +F++YA WWVRQ I +AI +RTIR+PV
Sbjct: 424 KAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPV 464
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 231 (86.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 46/87 (52%), Positives = 65/87 (74%)
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
E+ + + R LI ANLRLVV VAK++ GRG+ L DL+QEG++GL+++VEKF G +F
Sbjct: 277 EIDAKRAERH-LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKF 335
Query: 382 ASYAYWWVRQTIRKAIFQHSRTIRLPV 408
++YA WW+RQ I +AI +RTIR+PV
Sbjct: 336 STYATWWIRQAITRAIADQARTIRIPV 362
Score = 57 (25.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
+DP+R++L LL+A++E L ++++ R+ + + + + GR P+ E
Sbjct: 98 DDPVRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAE 151
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 234 (87.4 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K E + + +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G
Sbjct: 414 KGEKEARQAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 472
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+F++YA WW+RQ I ++I +RTIR+PV
Sbjct: 473 KFSTYATWWIRQAITRSIADQARTIRIPV 501
Score = 55 (24.4 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 217 ERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDR-NDPLRLFLWGPETRKLLTADEE 275
E +++K S +T T ++R+ ++ +E DR +DP+R++L + +LL+ + E
Sbjct: 79 EAEEEEQKGSTDLIT---TESNREVALAGAQAEKLDRTDDPVRMYLREMGSVELLSREGE 135
Query: 276 FELIAQIQ 283
+ +I+
Sbjct: 136 IAIAKRIE 143
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 234 (87.4 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 50/116 (43%), Positives = 76/116 (65%)
Query: 294 KLQSQFGREPTL-IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
KLQ Q E L IE K I R + ++++++ ANLRLV+ +AK+Y RG
Sbjct: 343 KLQ-QIEEETGLTIEQVKDIN---RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 398
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ DL+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I ++I +RTIR+PV
Sbjct: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454
Score = 52 (23.4 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQD 284
DP+R+++ T +LLT + E ++ +I+D
Sbjct: 96 DPVRMYMREMGTVELLTREGEIDIAKRIED 125
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 243 (90.6 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 66/203 (32%), Positives = 110/203 (54%)
Query: 207 VKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASV-KKKLSEGFDRNDPLRLFLWGPE 265
+KQF+ R + + + ++ Q +Y KA +KK F N+ +L E
Sbjct: 346 IKQFN--RLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFPHNETNMKWL---E 400
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
K ++ L +++ R ++ ++L+ Q I+ K I R E S
Sbjct: 401 QYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLN---IQEIKEINR--RVAIGEAKS 455
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ +E +I ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 456 RRAKKE-MIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 514
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
WW+RQ I ++I +RTIR+PV
Sbjct: 515 TWWIRQAITRSIADQARTIRIPV 537
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 241 (89.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 55/143 (38%), Positives = 93/143 (65%)
Query: 268 KLLTADEEFELIAQIQDLIR-LEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHS 325
K+L +D+ + +A++++ + + KLQ +E +L +E K I S R E +
Sbjct: 330 KVLASDKPY--VAKVREQEEEIRRSIQKLQ-MIEQETSLSVERIKDI--SRRMSIGEAKA 384
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 RRAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 443
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
WW+RQ I ++I +RTIR+PV
Sbjct: 444 TWWIRQAITRSIADQARTIRIPV 466
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 241 (89.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 55/143 (38%), Positives = 93/143 (65%)
Query: 268 KLLTADEEFELIAQIQDLIR-LEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHS 325
K+L +D+ + +A++++ + + KLQ +E +L +E K I S R E +
Sbjct: 330 KVLASDKPY--VAKVREQEEEIRRSIQKLQ-MIEQETSLSVERIKDI--SRRMSIGEAKA 384
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+ +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA
Sbjct: 385 RRAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 443
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
WW+RQ I ++I +RTIR+PV
Sbjct: 444 TWWIRQAITRSIADQARTIRIPV 466
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 233 (87.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 39/80 (48%), Positives = 64/80 (80%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I ++I +RTIR+PV
Sbjct: 438 IRQAITRSIADQARTIRIPV 457
Score = 47 (21.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 231 TNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T+ + A++ SE DP+R+++ T +LLT + E +IA+ R+E+
Sbjct: 72 TDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEI-VIAK-----RIEE 125
Query: 291 EKSKLQSQFGREPTLI 306
+ +QS P I
Sbjct: 126 GINTVQSSVAEYPQAI 141
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 228 (85.3 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 41/99 (41%), Positives = 67/99 (67%)
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
++I R + + L + N+++ +++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+
Sbjct: 342 RSISFLTRKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKA 401
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
V+KF + G +F++YA WW RQ I +AI +R PV
Sbjct: 402 VDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVRKPV 440
Score = 52 (23.4 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQI 282
+DP+RL+L KLL+ D+E E+ I
Sbjct: 91 DDPVRLYLREMSYVKLLSRDDEVEIAKAI 119
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 229 (85.7 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 47/134 (35%), Positives = 82/134 (61%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E +++ ++ +L + K + F E + + K I +K + ++ ++
Sbjct: 333 ETTMVSTYMEIKKLFQTKEASEKSFDLEKSRL---KEI---LEQIKRGKKISDEAKGRMA 386
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394
+NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW+RQ I
Sbjct: 387 KSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAIS 446
Query: 395 KAIFQHSRTIRLPV 408
+AI +RTIR+P+
Sbjct: 447 RAIADQARTIRIPI 460
Score = 50 (22.7 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 209 QFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRND-PLRLFLWGPETR 267
+ +Q + +E +K+ + K ++ + N + + L E + R+D P+R++L
Sbjct: 59 EIAQMKNIED-AKRLQEEKQKLQDTSLENEFDLANENDLLE-WSRSDSPVRMYLREMGQI 116
Query: 268 KLLTADEEFELIAQIQ 283
LL DEE E+ +I+
Sbjct: 117 ALLNKDEEIEISKKIE 132
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 233 (87.1 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 39/80 (48%), Positives = 64/80 (80%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F++YA WW
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I ++I +RTIR+PV
Sbjct: 437 IRQAITRSIADQARTIRIPV 456
Score = 45 (20.9 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
DP+R+++ T +LLT E + +I++ I+ E ++S
Sbjct: 96 DPVRMYMREMGTVELLTRKGEIVIAKRIEEGIK-EVQRS 133
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 229 (85.7 bits), Expect = 9.2e-17, P = 9.2e-17
Identities = 50/152 (32%), Positives = 81/152 (53%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
G L+ EE +L +++ +LE + ++ E + A G R
Sbjct: 116 GASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEEN---EMVSVLLASGRGKKKRSANEI 172
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +REK+ RLVV +A YQG+G++L DL+QEGS+GL++ E+F P G + +
Sbjct: 173 LCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLS 232
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLS 414
+Y YWW++Q I +AI SR ++LP + L+
Sbjct: 233 TYVYWWIKQAILRAIAHKSRLVKLPGSMWELT 264
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 224 (83.9 bits), Expect = 8.4e-16, P = 8.4e-16
Identities = 60/217 (27%), Positives = 117/217 (53%)
Query: 195 SLTSSLGYPLEEVKQF-SQPRFLERRSK-KRKVSKPQVTNHETYNSRKASVKKKLSEGFD 252
S+TS L E V +Q F+ R K K+K + VT N ++S+ L ++
Sbjct: 198 SITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAE---NGDQSSLPIGLRTTWN 254
Query: 253 RNDPLRLFLWGPETRKLLT--ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
D R+ P+ RK + E E+ ++ + +E+ +++L+ + G+ +L WA
Sbjct: 255 NIDVPRVRR-PPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAA 313
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
A G++ + L LH G R++L+ + LV+ +A+ Y+G GI+ DL+Q G +G+++
Sbjct: 314 AAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGA 373
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
E+F G +F++Y +W+R+++ + +H+R + +P
Sbjct: 374 ERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIP 410
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 193 (73.0 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 47/130 (36%), Positives = 73/130 (56%)
Query: 283 QDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC----RDLKSELHSGNS--SREKLINA 336
Q L R+E E+S G + I W I L DL ++ N + KL+ +
Sbjct: 3 QFLTRVE-ERSLSIGSIG---SYISWVNRIPLLSAEEEHDLANKFRQSNDLEAARKLVLS 58
Query: 337 NLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396
+LR VV +A+ Y G G+S DL+QEG++GLMK+V++F PQ G R S+A W+R I +
Sbjct: 59 HLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHWIRAEIHEF 118
Query: 397 IFQHSRTIRL 406
I ++ R +++
Sbjct: 119 ILKNWRIVKI 128
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 189 (71.6 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 37/92 (40%), Positives = 61/92 (66%)
Query: 317 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R+L LH G+ K LI ++LR VVHVA+ Y G G+ + DL+QEG++GLMK+V++F
Sbjct: 35 RELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFN 94
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
P+ G R S+A W++ I + + ++ R +++
Sbjct: 95 PEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKI 126
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 189 (71.6 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 37/92 (40%), Positives = 61/92 (66%)
Query: 317 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R+L LH G+ K LI ++LR VVHVA+ Y G G+ + DL+QEG++GLMK+V++F
Sbjct: 35 RELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFN 94
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
P+ G R S+A W++ I + + ++ R +++
Sbjct: 95 PEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKI 126
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 188 (71.2 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 35/91 (38%), Positives = 62/91 (68%)
Query: 318 DLKSELHSGNS--SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
DL + L++ N + ++LI ++LR V+HVAK Y G G+ DL+QEG++GLMK+V++F P
Sbjct: 35 DLATRLYNENDLQAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNP 94
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
+ G R S+A W++ I + + ++ R +++
Sbjct: 95 EVGVRLVSFAVHWIKAEIHEFVLKNWRIVKV 125
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 191 (72.3 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 55/201 (27%), Positives = 103/201 (51%)
Query: 216 LERR-SKKRKVS-KPQVTNHETYNSRKASVKKKLSE---GFDRNDPLRLFLWGP-ETRKL 269
L++R + KR V KP V + + +++ ++K+ + ++ + W + +
Sbjct: 160 LDKRIALKRNVQEKPVVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPV 219
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
L++ E L +Q + L + K LQ GREP E A I ++ ++K ++ G ++
Sbjct: 220 LSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAA 279
Query: 330 REKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
R KLI NLRLV+ V +Y G DL Q G GL+ ++++F+P+ R ++Y
Sbjct: 280 RNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGL 339
Query: 387 WWVRQTIRKAIFQHSRTIRLP 407
+W+R I +++ + T R+P
Sbjct: 340 FWIRHAIIRSMTTSNFT-RVP 359
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 181 (68.8 bits), Expect = 7.6e-12, P = 7.6e-12
Identities = 36/92 (39%), Positives = 59/92 (64%)
Query: 317 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R L +LH G+ K LI ++LR VVH+A+ Y G G+ DL+QEG++GLMK+V +F
Sbjct: 35 RALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFN 94
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
P+ G R S+A W++ I + + ++ R +++
Sbjct: 95 PEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKV 126
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 188 (71.2 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 42/142 (29%), Positives = 79/142 (55%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
+LT+ + L +Q + + + K L+++ EP + A+A+ +S ++ L G +
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 329 SREKLINANLRLVVHVAKQY---QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+R KLI NLRLV++ +Y D+ Q G+ GL+ ++++F+P+ G R ++YA
Sbjct: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
Query: 386 YWWVRQTIRKAIFQHSRTIRLP 407
+W+R +I +AI + T R P
Sbjct: 323 LFWIRHSIVRAITLSNFT-RFP 343
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 176 (67.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 32/76 (42%), Positives = 53/76 (69%)
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
++LI ++LR VVHVAK Y G G+ DL+QEG++GLMK+V++F P G R S+A W++
Sbjct: 54 KQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIK 113
Query: 391 QTIRKAIFQHSRTIRL 406
I + + ++ R +++
Sbjct: 114 AEIHEYVLKNWRIVKV 129
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 174 (66.3 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 32/65 (49%), Positives = 44/65 (67%)
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
LI +NLR VV +A +Y+ G+ + DL+QEG++GLM +V KF P G R SYA WW+R
Sbjct: 49 LITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWWIRAY 108
Query: 393 IRKAI 397
I+ I
Sbjct: 109 IQNHI 113
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 171 (65.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 28/82 (34%), Positives = 53/82 (64%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
H ++ +LI A +RL + +A +++ G ++DL+QE +GLMK+ +KF P G RF++
Sbjct: 36 HRDEAALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFST 95
Query: 384 YAYWWVRQTIRKAIFQHSRTIR 405
YA WW++ +I+ + ++ +R
Sbjct: 96 YAVWWIKASIQDYVMRNWSMVR 117
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 170 (64.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 30/75 (40%), Positives = 53/75 (70%)
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
KL+ ++LRLVV VA ++ G+ L +L+ EG++GLM++V+KF P+ G R ++YA WW++
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 392 TIRKAIFQHSRTIRL 406
+I+ I + +R+
Sbjct: 110 SIKDYILRSWSCMRI 124
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 161 (61.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+H S+ ++L+ A LRLVV V +++ G L DL EG++GLMK+++ F P G A
Sbjct: 40 VHRDISAAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIA 99
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRL 406
+YA WW++ I + + + +++
Sbjct: 100 TYAIWWIKAAINEYVIRSWSMVKI 123
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 160 (61.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 27/78 (34%), Positives = 51/78 (65%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S K++ ++LRL +A Y+G G+ +++ E ++GLM++V++F P+ G R A+YA WW
Sbjct: 49 SAHKMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWW 108
Query: 389 VRQTIRKAIFQHSRTIRL 406
+R I++ I + ++L
Sbjct: 109 IRAAIQEYILRSWSLVKL 126
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 317 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
R L E+ SG S+REKL+N NLRLV+ V +++ RG + DL Q G +GLMKS++ F
Sbjct: 25 RKLFREMQSGEISAREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDL 84
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
+F++YA + IR+ + + + IR+
Sbjct: 85 GQNVKFSTYAVPMIIGEIRRYL-RDNNPIRV 114
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 153 (58.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+L+ ++LRLVV VA ++ + L +L+ EG++GLM++V+KF P G R ++YA WW++
Sbjct: 50 RLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAIWWIKA 109
Query: 392 TIRKAIFQHSRTIRL 406
I+ I + I++
Sbjct: 110 FIKDYILKSWSCIKI 124
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 141 (54.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+ L NLRLV H+ K+++G G + DL+ G++GL+K+++ F+P G + A
Sbjct: 44 LQGDREARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTKLA 103
Query: 383 SYAYWWVRQTIRKAIFQHSRTIR 405
+YA + + I H R +
Sbjct: 104 TYA----AKCVENEILMHLRATK 122
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 142 (55.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 35/105 (33%), Positives = 63/105 (60%)
Query: 317 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L + G+ ++REKLIN NL+LV V +++ RG + DL Q G++GL+K+++KF
Sbjct: 22 KELIEKAQKGDVAAREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAIDKFDL 81
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFK 420
+ +F++YA + IR+ + + + IR+ T L + I K
Sbjct: 82 KQQVKFSTYAVPMIVGEIRRFL-RDDQAIRISRSTKELG-VKILK 124
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 140 (54.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/85 (36%), Positives = 53/85 (62%)
Query: 319 LKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
L ++L G+ ++R LI NLRLVV++A++++ GI++ DL+ G++GL+K+V F P+
Sbjct: 47 LLNKLPKGDQAARSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEK 106
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSR 402
+ A+YA + I I H R
Sbjct: 107 KIKLATYA----SRCIENEILMHLR 127
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 138 (53.6 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 28/81 (34%), Positives = 53/81 (65%)
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ LI NLRLVV++A++++ G+++ DL+ G++GL+K+V F P+ + A+YA
Sbjct: 55 AAKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASR 114
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
+ I + ++S+ IRL V
Sbjct: 115 CIENEILMYLRRNSK-IRLEV 134
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 127 (49.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 323 LHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
+ G++ +R LI NLRLV H+ K+++ G DL+ G++GL+K++E + G +
Sbjct: 42 MEQGDAQARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSAGKGTKL 101
Query: 382 ASYAYWWVRQTIRKAIFQHSRTIR 405
A+YA + I I H R ++
Sbjct: 102 ATYA----ARCIENEILMHLRVLK 121
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/78 (33%), Positives = 50/78 (64%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+R+KLI+ NLRLV+ + +++ RG + DL Q G +GL+K+++ F + +F++YA
Sbjct: 38 ARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNFDLEQNVKFSTYAVPM 97
Query: 389 VRQTIRKAIFQHSRTIRL 406
+ IR+ + + + IR+
Sbjct: 98 IIGEIRRYL-RDNNPIRV 114
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+R+++I N+RLV V +++ RG DL Q G +GL+KSV+KF +F++YA
Sbjct: 31 ARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYA 87
>UNIPROTKB|Q7D5S2 [details] [associations]
symbol:sigF "Alternative RNA polymerase sigma factor SigF"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006629 "lipid metabolic process"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0034059 "response to anoxia" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046677 "response to antibiotic" evidence=IMP] [GO:0052572
"response to host immune response" evidence=IEP] [GO:0070417
"cellular response to cold" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0045893 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006629 GO:GO:0046677 GO:GO:0052572 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0070417
GO:GO:0006995 GO:GO:0034059 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0043175
HOGENOM:HOG000270270 KO:K03090 TIGRFAMs:TIGR02980 EMBL:AL123456
RefSeq:NP_217803.1 RefSeq:NP_337914.1 RefSeq:YP_006516763.1
SMR:Q7D5S2 IntAct:Q7D5S2 EnsemblBacteria:EBMYCT00000001724
EnsemblBacteria:EBMYCT00000068996 GeneID:13318109 GeneID:888727
GeneID:922492 KEGG:mtc:MT3385 KEGG:mtu:Rv3286c KEGG:mtv:RVBD_3286c
PATRIC:18129196 TubercuList:Rv3286c OMA:EMDRDEV
ProtClustDB:PRK07122 Uniprot:Q7D5S2
Length = 261
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
R+K++ L L H+A++++GRG DL+Q +GL+ + +F + G F S+A +
Sbjct: 40 RDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTI 99
Query: 390 RQTIRKAIFQHSRTIRLP 407
+R+ +S ++++P
Sbjct: 100 MGEVRRHFRDNSWSVKVP 117
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+R+ ++ +N+RLV V +++ RG DL Q G +GL+KSV+KF +F++YA
Sbjct: 33 ARDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYA 89
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 429 382 0.00091 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 54
No. of states in DFA: 614 (65 KB)
Total size of DFA: 244 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.86u 0.10s 33.96t Elapsed: 00:00:02
Total cpu time: 33.87u 0.10s 33.97t Elapsed: 00:00:02
Start: Fri May 10 06:08:19 2013 End: Fri May 10 06:08:21 2013