BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014193
(429 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 303/413 (73%), Gaps = 34/413 (8%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEAGR LLSS PSFP+RT +K+SL+SS VL+ EQ+ PAV+S+PT+S A+HFP
Sbjct: 1 MEAGRTLLSSSPSFPTRTHLKNSLTSS--------VLILREQATPAVSSIPTTSTAQHFP 52
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDE+RPL ++FKED+ SQAT D R E E K+S +LDQLV++ E+Q
Sbjct: 53 TSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQL 112
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
HWP WNL T++ +D EP + + LA++ALSASK AA L
Sbjct: 113 HHWPAYWNL----------------------TDKLIDVEPTNVINLAKRALSASKHAAFL 150
Query: 181 AENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 240
A+N + +++ TSS + LEEVK R L R+S R+ K + ETY+S+
Sbjct: 151 ADN----NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKS 206
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A ++K+LS+GFD NDPLRLFLWGPET++LLTA EEFELIAQIQDL+ LE K++L+SQFG
Sbjct: 207 ADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFG 266
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
REPTL+EWA+A+GLSC LK +LHSGN SREKLINANLR+VVH+AK+YQ RG+ L DLLQ
Sbjct: 267 REPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQ 326
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
EG++GLMKS+EKFKPQAGCRFA+YAYWW+RQTI KAIFQHSRTIRLP + L
Sbjct: 327 EGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGL 379
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/419 (59%), Positives = 306/419 (73%), Gaps = 20/419 (4%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEAG N+LSS PSFP RT + +SSSSVLM ++Q APAVAS+PT+ +AR FP
Sbjct: 1 MEAGTNILSSTPSFPPRTHFR---------NSSSSVLMLHDQVAPAVASIPTT-IARKFP 50
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDEYRP K+++T QAT + R +E +E+NS D +Q + + E Q
Sbjct: 51 TSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI-VVSADEENSDDHNQYMVNFERQL 109
Query: 121 LHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 179
L P LW P + GE P S M+S++ D E S+D +P D +ALA+KALSASK+A S
Sbjct: 110 LLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVS 169
Query: 180 LAENPKLNGAEFTD-----ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHE 234
L EN KL GA+ D + SS PLEE K R LERRSKKR+ P+V HE
Sbjct: 170 LYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKRR--NPKVAVHE 226
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+ SR+A V++K++EG+D DPLRLFLWGPETRKLLTA EE ELI QIQ+L+RLE+ K +
Sbjct: 227 NHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKR 286
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
LQS REPT++EWA+A+GLSC+ L+S+LHSGN SR+KLI ANLR+VVH+AKQYQGRG++
Sbjct: 287 LQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLN 346
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
L DLLQEGSMGLM SVEKFKP AGCRFASYAYWW+RQ +RKAIFQHSRTIRLP ++L
Sbjct: 347 LQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSL 405
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/421 (58%), Positives = 306/421 (72%), Gaps = 13/421 (3%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASS--SSSSSVLMHNEQSAPAVASVPTSSVARH 58
MEAG N+LSS PSFP RT ++S SS + VLM ++Q APAVAS+PT+ +AR
Sbjct: 1 MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARK 59
Query: 59 FPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEH 118
FPTSVLLQEQRDEYRP K+++T QAT + R +E +E+NS D +Q + + E
Sbjct: 60 FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEI-VVSADEENSDDHNQYMVNFER 118
Query: 119 QFLHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 177
Q L P LW P + GE P S M+S++ D E S+D +P D +ALA+KALSASK+A
Sbjct: 119 QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 178
Query: 178 ASLAENPKLNGAEFTD-----ISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SL EN KL GA+ D + SS PLEE K R LERRSKKR+ P+V
Sbjct: 179 VSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE-KTVRSTRLLERRSKKRR--NPKVAV 235
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
HE + SR+A V++K++EG+D DPLRLFLWGPETRKLLTA EE ELI QIQ+L+RLE+ K
Sbjct: 236 HENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVK 295
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+LQS REPT++EWA+A+GLSC+ L+S+LHSGN SR+KLI ANLR+VVH+AKQYQGRG
Sbjct: 296 KRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRG 355
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
++L DLLQEGSMGLM SVEKFKP AGCRFASYAYWW+RQ +RKAIFQHSRTIRLP ++
Sbjct: 356 LNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYS 415
Query: 413 L 413
L
Sbjct: 416 L 416
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/408 (59%), Positives = 296/408 (72%), Gaps = 23/408 (5%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R LSSPP FPSRT K+SLSSS + + ++H EQ+ PAV S PT+S+AR+FP
Sbjct: 1 METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLH-EQAVPAVTSAPTTSIARNFP 59
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
TSVLLQEQRDE+RPLL++FKEDKT QAT D++ ++ E S LDQL+ H
Sbjct: 60 TSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQLIL---HSN 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
L W SLTMQS++ +T+E + EP + + LARKALSASKEAA L
Sbjct: 117 LSW------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALL 158
Query: 181 AEN-PKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSR 239
A+ L+ T + T + LEEVK R LER+SK R+V+K + HE Y+SR
Sbjct: 159 AQKCANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSR 218
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
+A V+KK++EGFD DPLRLFLWGPET++LLTA EE ELI Q+QDL+ LE K K + QF
Sbjct: 219 RAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQF 278
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
GR+PTL+EWA A+GLS ++S+LHSGN SREKLINANLR+VVH+AKQYQGRG+SL DLL
Sbjct: 279 GRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLL 338
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
QEGSMGLMKS+EKFKPQ GCRFA+YAYWW+RQT+RKAIFQHSRTIRLP
Sbjct: 339 QEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLP 386
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/421 (55%), Positives = 295/421 (70%), Gaps = 14/421 (3%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H S+ SSSS+SSVLM +EQ++P VAS ++ A++FP
Sbjct: 1 MEFARTMFCSSPPFPPRTH--HPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFP 58
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLL EQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 59 ASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVH-EENNTENADQVVLDFRKHL 117
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
HWP+L S + GE + S T++ +S D E + F+ V+LA+KALS SK+ +S+
Sbjct: 118 HHWPNLQLTSSQI--GE-VAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSV 174
Query: 181 AENPKLNGAEFTDISLTS-SLGYP-LEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNS 238
E+ K A+ SL S SL P + K R LERRSK+RKV K +V + ETY +
Sbjct: 175 VEDLKSIKADDVPFSLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 234
Query: 239 RKASVKKKL------SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
RK ++KL +E D++DPLRLFLWGPET++LLT ++E +LI+QIQDL+RLE+ K
Sbjct: 235 RKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVK 294
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+ LQSQFGREPT+ EWA+ GL+CR L+S+LHSGN SREKLI ANLR+VVHVAK YQGRG
Sbjct: 295 TNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRG 354
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
+SL DLLQEGSMGLMKSVEKF P AG RF +YA+WW+RQ IRKA+F+HSRTIRLP F
Sbjct: 355 LSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 414
Query: 413 L 413
L
Sbjct: 415 L 415
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/423 (52%), Positives = 288/423 (68%), Gaps = 15/423 (3%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H ++ SSS+SVLM EQ++P VAS ++ A++FP
Sbjct: 1 MEFSRTMFCSSPPFPPRT---HHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFP 57
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLLQEQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 58 ASVLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VMVHEENNTENADQVVLDFRKHL 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
+WP L NL + GE S S T+Q +S+D + + + V+LA+KALS SK+ +S+
Sbjct: 117 HYWPHLQNLLASSQTGE-ISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSV 175
Query: 181 AENPKLNGAEFTDISL---TSSLGYP-LEEVKQFSQPRFLERRSKKRKVSKPQVTNHETY 236
E+ K A+ I ++ L P + K R LERRSK+RKV K +V + ETY
Sbjct: 176 VEDLKSIKADDDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETY 235
Query: 237 NSRKAS------VKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
+RK V+KK +E D+NDPL FL GPET++LLT ++E +LI+QIQDL+RLE+
Sbjct: 236 LARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEE 295
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
K+KLQSQFGREPT+ EWA+ +GL+CR L ++L SG+ SREKLI ANLR+VVHVAK YQG
Sbjct: 296 VKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQG 355
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMT 410
RG+SL DLLQEGSMGLMKSVEKF P G RF +YA+WW+RQ IRKA+F+HSRTIRLP
Sbjct: 356 RGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKV 415
Query: 411 FNL 413
F L
Sbjct: 416 FIL 418
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 221/420 (52%), Positives = 279/420 (66%), Gaps = 21/420 (5%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSS-------VLMHNEQSAPAVASVPTS 53
MEAG NLLSS F SR + L+ S SS++S S V M EQ++PA
Sbjct: 1 MEAGLNLLSSSSPFISRCHPRSFLAPSCSSAASPSSSSSSSSVYMFPEQASPA------- 53
Query: 54 SVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV 113
R+F TS L QEQ E RP + K+D++SQ T + R IE + ++E + D D L+
Sbjct: 54 ---RYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERRLIE-RSVPIDEGSRDDHDHLI 109
Query: 114 QDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
+L+HQ + WP L + PP++ E S+ +S + E V EP + +ALA+KALSA
Sbjct: 110 WELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSA 169
Query: 174 SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNH 233
SK+AA L + +L G SL SL +E + R +RRSKKRKV K T
Sbjct: 170 SKQAALLVDETELVGTSLDYSSLDDSLS---KEGRTVRSTRLQDRRSKKRKVPKHVTTID 226
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E N R ++K SE FD NDPLRLFLWGPET+KLLTA EE ELI QIQDL+ L+ K+
Sbjct: 227 EISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKA 286
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+LQSQF REPTL+EWA+A+G++C+ L+S+LH +SREKLINANLR+VVH+AKQYQGRG+
Sbjct: 287 RLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGL 346
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
SLHDLLQ GS+GLMKSVEKFKPQAGCRF SYAYWW+R +I KAIFQHSRTIRLP + L
Sbjct: 347 SLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYAL 406
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 219/421 (52%), Positives = 274/421 (65%), Gaps = 38/421 (9%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K S SS SS V++H + + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E +PL H +ED+TSQ T + R D+LV +
Sbjct: 56 ASVLSQELREESKPLSHALREDRTSQLTLERRQ---------------FDELVSSREDEK 100
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P+V S DA+ D VALA+KALSA
Sbjct: 101 FEQQLLHSAGLWNLLISPLTTEKQLPAV----------VSPSADADLCDLVALAQKALSA 150
Query: 174 SKEAASLAENPKLNGAEF-TDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SK+AA L EN + + + D TSS E+ R LERR+K R+ K +
Sbjct: 151 SKQAALLVENSEADPPDNPRDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMD 210
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E Y +K + KKK+ +GFD +D L+LFLWGPET++LLTA EE ELIA IQ LI+LEK K
Sbjct: 211 SEGYVPQKINAKKKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVK 270
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+GLS LKSE+H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 271 TKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRG 330
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
++ DLLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLP +
Sbjct: 331 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 390
Query: 413 L 413
L
Sbjct: 391 L 391
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/421 (51%), Positives = 278/421 (66%), Gaps = 39/421 (9%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K + SS SS V++H + + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK------SYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFP 54
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E RPL H +ED+TSQ T + R D+LV +
Sbjct: 55 ASVLSQEPREESRPLSHALREDRTSQLTLERRQ---------------FDELVSSREDEK 99
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P V + DAE D VALA+KALSA
Sbjct: 100 FEQQLLHSAGLWNLLISPLTAETKLPPVVPPL----------ADAELCDIVALAQKALSA 149
Query: 174 SKEAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQ-PRFLERRSKKRKVSKPQVTN 232
SK+AA LA++ + N ++ T SL++S L E + R LERR+K R+ K +
Sbjct: 150 SKQAALLADDTEANPSDNTRGSLSTSSSMSLPEKGAIVRSKRQLERRAKNRRAPKSNDVD 209
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
+E Y +K + KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K
Sbjct: 210 NEGYVPQKINAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 269
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+G+S DLKSE+H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 270 TKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRG 329
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
++ DLLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLP +
Sbjct: 330 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 389
Query: 413 L 413
L
Sbjct: 390 L 390
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 214/421 (50%), Positives = 275/421 (65%), Gaps = 38/421 (9%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
MEA RNL+SS PSF ++T +K S+ SS SS V++H++ + P V S +S++RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QD 115
SVL QE R+E RPL H ++D+TSQ T + R D+LV +
Sbjct: 56 ASVLSQEPREESRPLSHALRDDRTSQLTLERRQ---------------FDELVSSREDEK 100
Query: 116 LEHQFLHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA 173
E Q LH LWNL SP + P+V + DAE D VALA+KALSA
Sbjct: 101 FEQQLLHSTGLWNLLISPLTSETKLPAVVSPL----------ADAELCDVVALAQKALSA 150
Query: 174 SKEAASLAENPKLNGAE-FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
SK+AA L ++ + N ++ D TSS E+ R LERR+K R+ K +
Sbjct: 151 SKQAALLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVD 210
Query: 233 HETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
E Y +K S KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K
Sbjct: 211 DEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 270
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
+KL+SQ G EPT+ EWA+A+G+S LKS++H G SSREKLI ANLRLVVH+AKQYQ RG
Sbjct: 271 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 330
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
++ DLLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLP +
Sbjct: 331 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 390
Query: 413 L 413
L
Sbjct: 391 L 391
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 201/426 (47%), Positives = 278/426 (65%), Gaps = 30/426 (7%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME+ R + S P P RT ++L SS S +SVLM EQ AP V + TS +++FP
Sbjct: 1 MESARTMFCSSPLCPPRTHHWNTLPSS----SYTSVLMLREQVAPTVTAWCTSYSSQNFP 56
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKN-SGDLDQLVQDLEHQ 119
TSVLLQEQ DEYRPLLH+ K+DKT QAT ++R ++ + V+EKN + + DQ+ +D
Sbjct: 57 TSVLLQEQCDEYRPLLHISKKDKTCQATLNTRQMDMVS--VQEKNDTSNTDQVARDFRQH 114
Query: 120 FLHWPDLWNLSPPMKRGE-DPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178
P L NL + GE D S +L + D+ +AV+L+++A S +++
Sbjct: 115 LHLLPRLENLLTSSQTGEMDGSSTL----------QHADSLQCNAVSLSKQAASVAEDLI 164
Query: 179 SL-AENPKLNGAEF-----TDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTN 232
S+ A+ N F + ++ +SS L K R ERR+K+RKV K +V +
Sbjct: 165 SIKADEDADNSIPFGLVPPSCLASSSSAEPLLGGNKTVRSTRLRERRAKERKVPKLKVKD 224
Query: 233 HETY------NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
ETY K V+KK+S+G +++DPL FL PE+++LLT+++E +L+ QIQ+L+
Sbjct: 225 KETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQSPESKQLLTSEQESQLVVQIQELL 284
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
RLE K+ LQSQFGREPT+ EWA+ GL+CR +K++L GN SREKLI ANLRLV ++AK
Sbjct: 285 RLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCGNRSREKLIQANLRLVHYIAK 344
Query: 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
YQGRG+S+ DLLQEGS GL+KS++KFK QAGCRFASYAYWW++Q IRKAI+ HSRTIRL
Sbjct: 345 SYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFASYAYWWIKQAIRKAIYNHSRTIRL 404
Query: 407 PVMTFN 412
P +N
Sbjct: 405 PEKVYN 410
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 350 bits (897), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 208/395 (52%), Positives = 268/395 (67%), Gaps = 34/395 (8%)
Query: 33 SSSVLMH-NEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKED-KTSQATSD 90
S SV+M ++Q+APA++S PT+ FPTSVLLQE RDEY+PLLH ED K QAT +
Sbjct: 15 SPSVMMPPHDQAAPALSSWPTT-----FPTSVLLQEHRDEYKPLLHTCNEDNKPPQATLN 69
Query: 91 SR-----NIETEAFFVEEKNSGDLDQLVQDLEHQF---LHWPDLWNLSPPMKRGEDPSVS 142
+R +I + + G +D V + HQ H +L SP E+ VS
Sbjct: 70 TRVTDMTSICEKIITGDGDGDGHVDVSVHNCMHQLHLRCHLQNLLASSP-----EEDFVS 124
Query: 143 LTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTD---ISLT-S 198
+ S S+ T D +DA+ LA++ALSASK+AA++A+ KL + D + L S
Sbjct: 125 SSSSSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAQELKLVKIDDDDSLPLGLADS 184
Query: 199 SLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVK------KKLSEGFD 252
SLG + K R ERRSK+RKVS +V + E Y ++K++V+ KKL EG D
Sbjct: 185 SLG----KNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSNVQRRLRLEKKLKEGLD 240
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
N LRLFLW PET++LL+ +EE +LIAQIQDL +L++ K KLQS FGREPTL EWA +
Sbjct: 241 GNHALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGV 300
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLSCRDL+ LH GN S++KLI+ANLRLVVH+AK YQGRG+SL DLLQEGSMGLM+SVEK
Sbjct: 301 GLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEK 360
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
FKPQAGCRF++YAYWW+RQTIR+A+F HS+TIRLP
Sbjct: 361 FKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLP 395
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 183/356 (51%), Positives = 231/356 (64%), Gaps = 33/356 (9%)
Query: 66 QEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLV-----QDLEHQF 120
QE R+E RPL H ++D+TSQ T + R D+LV + E Q
Sbjct: 1 QEPREESRPLSHALRDDRTSQLTLERRQ---------------FDELVSSREDEKFEQQL 45
Query: 121 LHWPDLWNL--SPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAA 178
LH LWNL SP + P+V + DAE D VALA+KALSASK+AA
Sbjct: 46 LHSTGLWNLLISPLTSETKLPAVVSPL----------ADAELCDVVALAQKALSASKQAA 95
Query: 179 SLAENPKLNGAE-FTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYN 237
L ++ + N ++ D TSS E+ R LERR+K R+ K + E Y
Sbjct: 96 LLVDDTEANPSDNIKDSLSTSSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYV 155
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+K S KKK +G D +D L+LFLWGPET++LLTA EE ELI+ IQ L++LEK K+KL+S
Sbjct: 156 PQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLES 215
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
Q G EPT+ EWA+A+G+S LKS++H G SSREKLI ANLRLVVH+AKQYQ RG++ D
Sbjct: 216 QNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 275
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
LLQEGSMGLMKSVEKFKPQ+GCRFA+YAYWW+RQ+IRK+IFQ+SRTIRLP + L
Sbjct: 276 LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYML 331
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 138/212 (65%), Positives = 171/212 (80%), Gaps = 9/212 (4%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL------SEGFDRNDPLRLFLWGPETR 267
R LERRSK+RKV K +V + ETY +RK ++KL +E D++DPLRLFLWGPET+
Sbjct: 79 RLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHDQDDPLRLFLWGPETK 138
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E +LI+QIQDL+RLE+ K+ LQSQFGREPT+ EWA+ GL+CR L+S+LHSG
Sbjct: 139 QLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGI 198
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
SREKLI ANLR+VVHVAK YQGRG+SL DLLQEGSMGLMKSVEKF P AG RF +YA+W
Sbjct: 199 RSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFW 258
Query: 388 WVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIF 419
W+RQ IRKA+F+HSRTIRLP+ NL ++I
Sbjct: 259 WIRQAIRKAVFRHSRTIRLPI---NLEKVFIL 287
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 117/166 (70%), Positives = 137/166 (82%), Gaps = 2/166 (1%)
Query: 259 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 318
+FLWGPET+KLLT +EE +LI+QIQ+L RLE+ K +LQSQFGREPT+ EWA +GLSC
Sbjct: 1 MFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYA 60
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L+++L SG S+EKLI+ANLR+VVHVAK Y GRG+S DLLQEGSMGLMKSVEKFKPQAG
Sbjct: 61 LQTQLRSGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAG 120
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLP--VMTFNLSPIYIFKFY 422
CRFASYAYWW+RQTIR+A+F HSRTIRLP V T I KFY
Sbjct: 121 CRFASYAYWWIRQTIRRALFLHSRTIRLPENVYTLLGKLIEAKKFY 166
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 138/200 (69%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K D ++P RLFL ET + LTA
Sbjct: 187 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAK 246
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 247 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 306
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I
Sbjct: 307 ARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSI 366
Query: 394 RKAIFQHSRTIRLPVMTFNL 413
+K+IF++SR IRLP + L
Sbjct: 367 KKSIFKNSRLIRLPESVYAL 386
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 138/200 (69%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K D ++P RLFL ET + LTA
Sbjct: 186 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAK 245
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 246 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 305
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I
Sbjct: 306 ARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSI 365
Query: 394 RKAIFQHSRTIRLPVMTFNL 413
+K+IF++SR IRLP + L
Sbjct: 366 KKSIFKNSRLIRLPESVYAL 385
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/420 (33%), Positives = 221/420 (52%), Gaps = 46/420 (10%)
Query: 14 FPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYR 73
FP+ + S +SS + S +S +MH+ S +S A H+ S++ +EQ
Sbjct: 13 FPTSSPNFRSTASSPTPSRTSVPMMHD--------STGRASTACHYSPSLVAEEQVHGSV 64
Query: 74 PLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPM 133
L + + ++ + + EE + + ++DL+ Q ++ L
Sbjct: 65 SLKGEKALLELLLDMALEQHTQGKKVTGEEGAESEFESYLRDLQRQVIYQQVL------- 117
Query: 134 KRGEDPSVSLTMQSLSN-DTEESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFT 192
GE+ + + S + + ++D A L KE A L E + AE
Sbjct: 118 --GEEYNSTSVSTSTLSIKSSATLDLGATSATVL--------KEVAFLPEESGTSAAEL- 166
Query: 193 DISLTS--SLGYPLEEVKQFSQ-----PRFLERRSKKRKVSKPQVTN------------H 233
D++L L + E++ Q R LERRSKKR + T+
Sbjct: 167 DVTLLHRLDLNHSYEKLLSKGQVFIRSKRLLERRSKKRDAPRASSTDALCGVVSSTDALC 226
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
+++K KK D ++P +LFL PET + LTA EE +L +++Q+L++LE+ +
Sbjct: 227 GVVDTKKKEKSKKYGRVLDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQR 286
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+L++Q GREP + EWAKA+G+SC+DL+S +H G REK+ +N RLV+HVA++YQG G+
Sbjct: 287 RLEAQCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGL 346
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
+ DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ I+K+IF+HSR IRLP + L
Sbjct: 347 DIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLPESVYAL 406
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 135/200 (67%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTAD 273
R LERRSKKR + N + + K K + RLFL ET + LTA
Sbjct: 186 RLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAK 245
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE ++ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+
Sbjct: 246 EEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKM 305
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
+N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I
Sbjct: 306 ARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSI 365
Query: 394 RKAIFQHSRTIRLPVMTFNL 413
+K+IF++SR IRLP + L
Sbjct: 366 KKSIFKNSRLIRLPESVYAL 385
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 138/202 (68%), Gaps = 2/202 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 216 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 275
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S ++L+S + +G RE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
K+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 392 TIRKAIFQHSRTIRLPVMTFNL 413
+I+K+IF++SR IRLP + L
Sbjct: 396 SIKKSIFKNSRLIRLPESVYAL 417
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 120/169 (71%)
Query: 245 KKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
KK +D DP+R +L KLLT+ EE EL IQDL+R+E K+ L+ Q GREPT
Sbjct: 293 KKSQPAYDPQDPVRAYLRDIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPT 352
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
L+EWAKA+G L+S + SG + +++++N+NLRLVV +AK+YQGRG+++ DL+QEGSM
Sbjct: 353 LMEWAKAVGTERHSLESRIKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSM 412
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
GL++ EKF G +F++YA+WW+RQ I +AI SRTIRLPV + L
Sbjct: 413 GLIRGAEKFDHTRGFKFSTYAHWWIRQAITRAIADQSRTIRLPVHVYEL 461
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 138/218 (63%), Gaps = 18/218 (8%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 165 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 224
Query: 272 ADEEFELIAQIQD----------------LIRLEKEKSKLQSQFGREPTLIEWAKAIGLS 315
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S
Sbjct: 225 AKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMS 284
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L+S + +G REK+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P
Sbjct: 285 SKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNP 344
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
GCRF +YAYWW+RQ+I+K+IF++SR IRLP + L
Sbjct: 345 SKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYAL 382
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 138/218 (63%), Gaps = 18/218 (8%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 125 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 184
Query: 272 ADEEFELIAQIQD----------------LIRLEKEKSKLQSQFGREPTLIEWAKAIGLS 315
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S
Sbjct: 185 AKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMS 244
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L+S + +G REK+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P
Sbjct: 245 SKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNP 304
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
GCRF +YAYWW+RQ+I+K+IF++SR IRLP + L
Sbjct: 305 SKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLPESVYAL 342
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 115/162 (70%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D +DP+R +L KLLTA EE +L QIQDL++LE KS L+ + GR T+ EW++A
Sbjct: 259 DPSDPVRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRA 318
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G+ ++ L G +++K++N+NLRLVV +AK YQGRG++L DL+QEGSMGL++ E
Sbjct: 319 VGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAE 378
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
KF P G +F++YA+WW+RQ + ++I SRTIRLP+ + +
Sbjct: 379 KFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEV 420
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 121/175 (69%), Gaps = 5/175 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFL-WGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
T +SRK KK +S +D +RL W + +LLTA EE EL IQDLI+L++ ++
Sbjct: 263 TRSSRKG--KKAISSKGHISDSIRLLRDWS--SSRLLTASEEVELSRGIQDLIKLDRIRA 318
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + + G+EPTL +WA+ IG+ + LK L G S +K+IN NLRLV+ VAK YQ RG+
Sbjct: 319 KYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGL 378
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
SL DL+Q GSMGLM+S EKF G +F++YAYWW+RQ+I KA+ + SRTIRLPV
Sbjct: 379 SLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPV 433
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 120/175 (68%), Gaps = 5/175 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFL-WGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
T +SRK KK +S +D +RL W +LLTA EE EL IQDLI+L++ ++
Sbjct: 166 TRSSRKG--KKAISSKGHISDSIRLLRDWSSS--RLLTASEEVELSRGIQDLIKLDRIRA 221
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + + G+EPTL +WA+ IG+ + LK L G S +K+IN NLRLV+ VAK YQ RG+
Sbjct: 222 KYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGRDSFDKIINCNLRLVISVAKNYQNRGL 281
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
SL DL+Q GSMGLM+S EKF G +F++YAYWW+RQ+I KA+ + SRTIRLPV
Sbjct: 282 SLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPV 336
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 106/136 (77%)
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINAN 337
+ +QIQ+L++LE + LQ+Q GREPT+ EWA+A+G+SCR+L+S + +G REK+ +N
Sbjct: 1 MFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSN 60
Query: 338 LRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 397
RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF +YAYWW+RQ+I+K+I
Sbjct: 61 FRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSI 120
Query: 398 FQHSRTIRLPVMTFNL 413
F++SR IRLP + L
Sbjct: 121 FKNSRLIRLPESVYAL 136
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 115/160 (71%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R +L + KLL+A EE L +IQD+++LEK +++LQ GREPTL EW++A+
Sbjct: 268 SDPIRSYLRDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVS 327
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L+ + G S+++KL+N+NLRLVV + K YQGRG++L DL+QEGS+GL++ EKF
Sbjct: 328 LDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKF 387
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
P+ G +F++YA WW+RQ + +AI SR IRLPV + +
Sbjct: 388 DPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEV 427
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 129/195 (66%), Gaps = 1/195 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + ++ VT+ ++ S +S KK+ S + D +DPLR T +LLTA
Sbjct: 226 RQTERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTA 285
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL IQDL++LE+ + +L ++G EPT +WA A G++ R L+ L+ G ++K
Sbjct: 286 TEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDK 345
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 346 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 405
Query: 393 IRKAIFQHSRTIRLP 407
+RK + SRTIRLP
Sbjct: 406 VRKFLSDQSRTIRLP 420
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/162 (47%), Positives = 111/162 (68%), Gaps = 2/162 (1%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--DLIRLEKEKSKLQSQFGREPTLIEWAKA 311
DP+R +L KLLTA EE L +IQ DL+ LEK KS LQ + GREP++ EW++A
Sbjct: 273 TDPVRAYLRDIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRA 332
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G+ + + G S++K++N+NLRLVV + K YQGRG++L DL+QEGSMGL++ E
Sbjct: 333 VGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAE 392
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
KF P G +F++YA+WW+RQ + +AI SR IRLP+ + +
Sbjct: 393 KFDPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEV 434
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
NSRK K+ + D +DPLR + +LLT+ EE EL A IQDL++LEK +L+
Sbjct: 248 NSRK---KRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELK 304
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+FG+ P+ ++WA A G+ R L+ L+ G ++K+I +N+RLV+ +AK YQG G++L
Sbjct: 305 VRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQ 364
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SRTIRLP
Sbjct: 365 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 114/171 (66%), Gaps = 3/171 (1%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N RK K+ +++ D NDPLR + KLLT EE EL A IQDL++LE+ +++L
Sbjct: 243 NPRK---KRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELT 299
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ GR+PT +WA A G+ + L+ +H G ++K+I +N+RLV+ +AK YQG G++L
Sbjct: 300 ERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQ 359
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SR IRLP
Sbjct: 360 DLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLP 410
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++K+ + ++ TN ++ +S +K++S + D +DPLR +LLT
Sbjct: 204 RQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTP 263
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE +L A IQDL++LEK + L +FG +PT +WA G+ + L+ L+ G ++K
Sbjct: 264 TEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDK 323
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL+K EKF G +F++YA+WW++Q
Sbjct: 324 MIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQA 383
Query: 393 IRKAIFQHSRTIRLP 407
+RK++ SRTIRLP
Sbjct: 384 VRKSLSDQSRTIRLP 398
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 393 IRKAIFQHSRTIRLP 407
+RK++ SR IRLP
Sbjct: 396 VRKSLSDQSRMIRLP 410
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 393 IRKAIFQHSRTIRLP 407
+RK++ SR IRLP
Sbjct: 396 VRKSLSDQSRMIRLP 410
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + + ++ + S KK+ S + D +DPLR T +LLTA
Sbjct: 215 RQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTA 274
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ + +L ++G +PT +WA A G+ R L+ ++ G ++K
Sbjct: 275 SEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDK 334
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 335 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 394
Query: 393 IRKAIFQHSRTIRLP 407
+RK++ SRTIRLP
Sbjct: 395 VRKSLSDQSRTIRLP 409
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
+ S VT + NS++ S KK +E D +RL+L +LL ADEE EL +I
Sbjct: 57 ETSTKAVTATKEENSKEDSKKKSYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIA 111
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
DL+ LE+++++L++ G EPT EWA+ + + + + L G ++EK++ +NLRLVV
Sbjct: 112 DLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFRRRLMLGRRAKEKMVQSNLRLVVS 171
Query: 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403
+AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRT
Sbjct: 172 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 231
Query: 404 IRLPVMTFN 412
IRLPV +
Sbjct: 232 IRLPVHLYE 240
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q REP EWA+A+ L
Sbjct: 82 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVEL 141
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 142 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 201
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 202 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 238
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q REP EWA+A+ L
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQL 142
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 143 PLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 125/197 (63%), Gaps = 3/197 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKL--L 270
R ER++++ K + + + + + KK+L ++ D NDPLR + KL L
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLL 275
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
T EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G +
Sbjct: 276 TVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCK 335
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+K+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F++YA+WW++
Sbjct: 336 DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIK 395
Query: 391 QTIRKAIFQHSRTIRLP 407
Q +RK++ SR IRLP
Sbjct: 396 QAVRKSLSDQSRMIRLP 412
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 124/206 (60%), Gaps = 13/206 (6%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDDFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q REP EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPVMTF 411
WW+RQ I +AI SRTIRLPV +
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 125/206 (60%), Gaps = 13/206 (6%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + KL Q R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPVMTF 411
WW+RQ I +AI SRTIRLPV +
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 112/173 (64%), Gaps = 5/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +LQ Q
Sbjct: 70 RTQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQ 124
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 125 LEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 184
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 185 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 66 RRAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEE 121
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ ++ + LH G ++EK++ +NLRLVV +AK+Y RG+S DL
Sbjct: 122 YNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDL 181
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 182 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 234
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
RKA KKK D +RL+L +LL ADEE EL +I DL+ LE+ ++ L Q
Sbjct: 59 RKAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQ 114
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REPT EWA+ + ++ + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 115 LEREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 174
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 175 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 227
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 66 RRAQAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVREQLLEE 121
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ ++ + LH G ++EK++ +NLRLVV +AK+Y RG+S DL
Sbjct: 122 YNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDL 181
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 182 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 234
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 113/171 (66%), Gaps = 1/171 (0%)
Query: 238 SRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
S S +K++S + D +DPLR T +LLTA EE EL IQDL++LEK + L+
Sbjct: 248 SGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLE 307
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+FG +PT +WA A G+ + L+ + G ++K+I +N+RLV+ +AK YQG G+++
Sbjct: 308 ERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQ 367
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SRTIRLP
Sbjct: 368 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 418
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 113/171 (66%), Gaps = 1/171 (0%)
Query: 238 SRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
S S +K++S + D +DPLR T +LLTA EE EL IQDL++LEK + L+
Sbjct: 245 SGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLE 304
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+FG +PT +WA A G+ + L+ + G ++K+I +N+RLV+ +AK YQG G+++
Sbjct: 305 ERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQ 364
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
DL+QEG GL++ EKF G +F++YA+WW++Q +RK++ SRTIRLP
Sbjct: 365 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 415
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 112/184 (60%), Gaps = 5/184 (2%)
Query: 228 PQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR 287
P+ T + R KK +E D +RL+L +LL ADEE EL +I DL+
Sbjct: 55 PKATKARSTRRRAQPKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLE 109
Query: 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347
LE+ + L REP EWA A+ +S + LH G +++K++ +NLRLVV +AK+
Sbjct: 110 LERIREHLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKK 169
Query: 348 YQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLP
Sbjct: 170 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLP 229
Query: 408 VMTF 411
V +
Sbjct: 230 VHLY 233
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L+ +E+ + +L Q
Sbjct: 68 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQ 123
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ LS + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 124 LDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 183
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 184 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + L Q REP EWA+A+ L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + L Q REP EWA+A+ L
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKL 139
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 140 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 199
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 200 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 125/206 (60%), Gaps = 13/206 (6%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 45 EMDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 91
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q R+P EWA+A+ L + LH
Sbjct: 92 RIRLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHV 151
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 152 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 211
Query: 386 YWWVRQTIRKAIFQHSRTIRLPVMTF 411
WW+RQ I +AI SRTIRLPV +
Sbjct: 212 TWWIRQAITRAIADQSRTIRLPVHLY 237
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + LQ Q R P EWA A+ +
Sbjct: 72 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNM 131
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 132 TLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 191
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 192 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 228
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL Q
Sbjct: 67 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQQ 122
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 123 LDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 182
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 183 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 235
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 5/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R S KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q
Sbjct: 68 RTQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQ 122
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ L + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 123 LDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 182
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 183 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 235
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL +
Sbjct: 70 RRAQTKKKQYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDR 125
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA+A+ + + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 126 LDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 185
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 186 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 238
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 4/175 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N R+ KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L
Sbjct: 49 NRRRTQSKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 104
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q REP EWA + + + LH G ++EK++ +NLRLVV +AK+Y RG+S
Sbjct: 105 EQLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQ 164
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 165 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 219
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 125/206 (60%), Gaps = 13/206 (6%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
++ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 DIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L Q R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFRYRLHL 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPVMTF 411
WW+RQ I +AI SRTIRLPV +
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 105/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ +L Q R+P EWA+A+ L
Sbjct: 79 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQL 138
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 139 PLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 198
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 199 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 235
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+SQ GREP+ +W++A
Sbjct: 8 TDPVRSYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 121/196 (61%), Gaps = 2/196 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKK--LSEGFDRNDPLRLFLWGPETRKLLT 271
R ER++++ K + + ++ +S +KK S+ D NDPLR + KLLT
Sbjct: 215 RQTERKARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLT 274
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
A EE +L IQDL++LE+ +++L + G +PT +WA A G+ + L+ + G ++
Sbjct: 275 AREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKD 334
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I +N+RLV+ +AK YQG G+ DL+QEG GL++ EKF G +F++YA+WW++Q
Sbjct: 335 RMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQ 394
Query: 392 TIRKAIFQHSRTIRLP 407
+RK++ SR IRLP
Sbjct: 395 AVRKSLSDQSRMIRLP 410
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 111/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L +
Sbjct: 69 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLCEE 124
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA A+G+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 125 LERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 184
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 185 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 125/206 (60%), Gaps = 13/206 (6%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
++ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 DIDEFLEPQTDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L + R+P EWA+A+ L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHI 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPVMTF 411
WW+RQ I +AI SRTIRLPV +
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 5/183 (2%)
Query: 229 QVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL 288
+ T T R S KK +E D +RL+L +LL ADEE EL +I DL+ L
Sbjct: 40 KTTKARTARRRGQSKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLEL 94
Query: 289 EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQY 348
E+ L + REP L EWA + + + LH+G +++K++ +NLRLVV +AK+Y
Sbjct: 95 ERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKY 154
Query: 349 QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV
Sbjct: 155 MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 214
Query: 409 MTF 411
+
Sbjct: 215 HLY 217
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q + LE K L + G+EPT+ +WAKA +
Sbjct: 9 DPVRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKM 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ ++L+S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 TQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 110/174 (63%), Gaps = 5/174 (2%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
+R A KK +E D +RL+L +LL ADEE EL +I DL+ LE+ + +L
Sbjct: 64 TRTAGKKKHYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREELIY 118
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
REP + EWA A+ + K L G ++EK++ +NLRLVV +AK+Y RG+S D
Sbjct: 119 HLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQD 178
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
L+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 179 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 232
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 106/157 (67%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + +L+ R PT EWA+A G+
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGM 128
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+D + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 129 PLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 225
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q ++ LEK K++L + +EP+L EWA+A L
Sbjct: 9 DPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R+LK +L G +++K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q
Sbjct: 51 RRAQAKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQ 106
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA + + + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 107 LEREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 166
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 167 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 219
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q ++ LEK K++L + +EP+L EWA+A L
Sbjct: 9 DPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R LK +L G +++K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEQSRTIRLPIHITEKLNKI 171
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LLT +EE ++Q I L K K LQ + G+EPT +WAK
Sbjct: 8 NDLVRSYLKEIGRVDLLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS ++LK+ L +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSVKELKTTLEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q L+ LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R+ +S + SG +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 4/181 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRN----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T SRKA ++ + D +R++L +LL A+EE EL +I DL+ LE+
Sbjct: 41 TKKSRKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELER 100
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+ +L R PT EWA+A G+ +D + L G +++K++ +NLRLVV +AK+Y
Sbjct: 101 MREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMN 160
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMT 410
RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV
Sbjct: 161 RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHL 220
Query: 411 F 411
+
Sbjct: 221 Y 221
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 107/156 (68%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D++DPLR F + +LL+A EE EL IQDL++LE+ + +L+ +FG +PT +WA A
Sbjct: 249 DQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAA 308
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+ L+ L+ ++K+I +N+RLV+ +AK YQG G++L DL+QEG GL++ VE
Sbjct: 309 ARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVE 368
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
KF G +F++YA+WW+RQ +R+++ SRTIRLP
Sbjct: 369 KFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLP 404
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 4/181 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRN----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T SRKA ++ + D +R++L +LL A+EE EL +I DL+ LE+
Sbjct: 57 TKKSRKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELER 116
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+ +L R PT EWA+A G+ +D + L G +++K++ +NLRLVV +AK+Y
Sbjct: 117 MREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMN 176
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMT 410
RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV
Sbjct: 177 RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHL 236
Query: 411 F 411
+
Sbjct: 237 Y 237
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+++ GREP+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 103/157 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +L Q REP EWAK + +
Sbjct: 70 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 130 ELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 226
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 123/206 (59%), Gaps = 13/206 (6%)
Query: 206 EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPE 265
E+ +F +P+ E +K K +K + R S KK +E D +RL+L
Sbjct: 44 EIDEFLEPQSDEDDAKSGKAAKSR--------RRTQSKKKHYTE-----DSIRLYLQEIG 90
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
+LL ADEE EL +I DL+ LE+ + +L + R+P EWA + L + LH
Sbjct: 91 RIRLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLHV 150
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA
Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 210
Query: 386 YWWVRQTIRKAIFQHSRTIRLPVMTF 411
WW+RQ I +AI SRTIRLPV +
Sbjct: 211 TWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 107/157 (68%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + K+ GR PT +EW++AI +
Sbjct: 69 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINM 128
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L+ G +++K++++NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 129 EWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 188
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 189 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 225
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + +L + REP EWA + +
Sbjct: 68 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDM 127
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 128 PLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 187
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 188 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 224
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 103/154 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ DL E+ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 71 NLEDLDREIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFD 130
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI Q SRTIRLP+
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPI 164
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 112/173 (64%), Gaps = 5/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R A KK +E D +R++L +LL A+EE EL +I DL+ LE+ + KL+
Sbjct: 56 RDAGKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRN 110
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P+ EWA+ +G+ + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 111 LGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 170
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 171 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 223
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L L + K L QFG EPT +EW++A G
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ + G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSLVELQQAIEQGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 106/155 (68%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R++L LL DEE EL Q+Q L++L K LQ+ G E + +WA+A
Sbjct: 48 TDLVRVYLQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAK 107
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +LK ++ +G+ +++K+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF
Sbjct: 108 VGLFELKRQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKF 167
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI SRTIRLPV
Sbjct: 168 DPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 202
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q +++L + K +L + REPT +EWA +
Sbjct: 24 TDTVRTYLHEIGRVALLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQ 83
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 84 LSEAELKRLMHQGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKF 143
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI QH+RTIRLP+ +T L+ I
Sbjct: 144 DPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKI 187
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L+++E+ + +L +
Sbjct: 64 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDR 119
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
R+P EWA+A+ L + LH G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 120 LDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 179
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 180 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 232
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 112/173 (64%), Gaps = 5/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R A KK +E D +R++L +LL A+EE EL +I DL+ LE+ + KL+
Sbjct: 55 RDAGKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P+ EWA+ +G+ + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 169
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 170 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 222
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 112/173 (64%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I +L++LE+ +L++Q
Sbjct: 61 RRAQTKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQ 116
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
REP EWA A+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 117 LDREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 176
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 177 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 229
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 106/155 (68%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +RL+L LLT ++E +L ++Q ++RLE K +L G EP++ W KA
Sbjct: 21 SDNVRLYLRDIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAAD 80
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L++ L G+ +++K+I ANLRLVV +AK+Y+ R + L DL+QEG++GL ++ EK+
Sbjct: 81 LEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKY 140
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
PQ G RF++YAYWW+RQ I +AI + RTIRLP+
Sbjct: 141 DPQRGFRFSTYAYWWIRQGITRAIAEQGRTIRLPI 175
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ + ++ Q EPT +WA A+ +
Sbjct: 94 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDM 153
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L+ G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 154 PLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 213
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 214 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 250
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 103/154 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ DL ++ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 71 NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFD 130
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI Q SRTIRLP+
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPI 164
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q L+ LEK + + + G+EPT I+WAK +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L+S + G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 3/185 (1%)
Query: 235 TYNSRKASVKKKL--SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK 292
T SR +VK+ + D D +R +L LLT ++E Q+Q ++ + K
Sbjct: 3 TIKSRPTTVKQTYMGARQSDSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAK 62
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
L+ + REPT EWA+A+G S DLK+ + G S++K+I ANLRLVV +AK+YQ R
Sbjct: 63 ETLEKKLKREPTEEEWAEAVGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRN 122
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTF 411
+ DL+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T
Sbjct: 123 LEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITE 182
Query: 412 NLSPI 416
L+ I
Sbjct: 183 KLNKI 187
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 142/238 (59%), Gaps = 15/238 (6%)
Query: 183 NPKLNGAEFTDISLTSSLGYPLE--EVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK 240
N K N EF I+ Y ++ EVK+ + F +R K K+ +P+V + S
Sbjct: 21 NFKKNWLEFNLINNVEKNFYEVKKNEVKKIIKS-FNTQREFKNKIEEPEVAK---FQSET 76
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
V K +D +R +L KLL +EE +L +I L++ E K L+ + G
Sbjct: 77 KPVHKS-------DDSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLG 129
Query: 301 REPTLIEWAKAIGLS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
REPT +EW+ A +S + K+ L++ ++E++I ANLRLVV +AK+Y RG+SL DL+
Sbjct: 130 REPTALEWSAACKISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLV 189
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN-LSPI 416
QEGS+GL+++ EKF + G +F++YA WW++Q++ +AI HSRTIRLPV ++ LS I
Sbjct: 190 QEGSLGLIRATEKFDSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAI 247
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 108/171 (63%), Gaps = 8/171 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +RL+L LL DEE L ++QD ++L + +LQ + GREPTL EWA
Sbjct: 43 TDLVRLYLQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARAN 102
Query: 314 -------LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
L+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 103 QYPEWANLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 162
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P+ G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 163 ERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 213
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 115/178 (64%), Gaps = 5/178 (2%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
E +++ S KK +E D +RL+L +LL ADEE EL +I DL LE+ ++
Sbjct: 61 EATTTKEDSKKKSYTE-----DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRT 115
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+L++ G EPT EWA+ +G + + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 116 ELEATIGCEPTDEEWAEEVGQALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGL 175
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 233
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE L Q+Q L+ L++ K KL + G + +EW++A G
Sbjct: 17 TDTVRTYLQEIGRVPLLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAG 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L +L G ++ K+I ANLRLVV VAK+YQ R + DL+QEG++GL + VEKF
Sbjct: 77 ISETELVHQLRHGERAKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q SRTIRLP+ +T L+ I
Sbjct: 137 DPMKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKI 180
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L LE+ K L Q G EPTL EWAKA
Sbjct: 20 TDLVRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASS 79
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 80 LSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 139
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 140 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 183
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ GR+P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R +L LLT +EE ++Q ++ LEK K++L EPTL EWAKA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ ++LK + G +++K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E Q+Q +I L K L Q REPTL EWA+ + LS + L+ +L +G
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV VAK+YQ R + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWW 158
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ + +AI Q SRTIRLP+ MT L+ I
Sbjct: 159 IRQGVTRAIAQQSRTIRLPIHMTEKLNKI 187
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L+ L + + KL + R PT EWA+
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS DL + + G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 77 LSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RT+RLP+ +T L+ I
Sbjct: 137 DPTRGYKFSTYAYWWIRQAITRAIAQQARTVRLPIHITEKLNKI 180
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL---------IRLEK 290
K+ +K +LS DP+ +L + KLLTA EE L +IQ ++LEK
Sbjct: 249 KSLIKHRLS------DPICSYLRDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEK 302
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
+++LQ GREPT EW+ A+G++ + + G +++KL+N+NLRLVV + K YQG
Sbjct: 303 VRAELQRDMGREPTRSEWSLAVGMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQG 362
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMT 410
RG++L DL+Q GS+GL++ EKF P+ G +F++YA WW+RQ + ++I SR IRLPV
Sbjct: 363 RGMTLPDLIQRGSLGLIRGAEKFDPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPVHI 422
Query: 411 FNL 413
+ +
Sbjct: 423 YEV 425
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/178 (44%), Positives = 110/178 (61%), Gaps = 6/178 (3%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T R S KK +E D +R++L +LL A+EE EL QI DL+ LE +S
Sbjct: 60 TPRRRGQSKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRST 114
Query: 295 LQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
L GR PT EWA A + + R LH G +++K++ +NLRLVV +AK+Y RG+
Sbjct: 115 LIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVSIAKKYMNRGL 174
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 175 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 232
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 103/157 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I +L+ LE+ + +L + R+P EWA + L
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSL 140
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 141 PLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LLT +EE ++Q + LEK + + G+EPT +WA+A +
Sbjct: 9 DPVRSYLREIGRVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S R+L S + SG +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRRELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 106/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q ++ L + + + GREP+L EWA+
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ LH G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 137 DPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++ K KL + GREP+ EWA+ G
Sbjct: 9 TDSVRTYLREIGRVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S ++LK L G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 VSLKELKQALEDGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 172
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 106/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+QDLI+L+ + +L Q R+P EW+ A
Sbjct: 8 KDSVRSYLREIGRVPLLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ LH G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT++EE ++Q L+RL + L Q R+PT EWA GL
Sbjct: 37 DMVRTYLHEIGKIPLLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGL 96
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L+ + G S+ K+I ANLRLVV VAK+YQ R + L DL+QEG++GL ++V+KF
Sbjct: 97 NIEELEQIVRDGTRSKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFD 156
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLPV +T L+ I
Sbjct: 157 PTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKI 199
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 102/154 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LLTA+EE Q+Q L+ L +++L+ + G EP+ EWA A+ L
Sbjct: 11 DLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDL 70
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ DL ++ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + EKF
Sbjct: 71 NLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEKFD 130
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI Q SRTIRLP+
Sbjct: 131 PSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPI 164
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
+SR+A + + D D +R +L LLT ++E L Q+Q+L+RLE+ + +L+
Sbjct: 19 DSRQAPIAVRTLPPVD-GDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEEAEQELE 77
Query: 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISL 355
+ G ++P+ EWA A GLS LK +L SG ++E+++ ANLRLVV VAK+Y R + L
Sbjct: 78 MRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMEL 137
Query: 356 HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SRTIRLP+
Sbjct: 138 LDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 190
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 103/157 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ +L R+P EWA+A+ +
Sbjct: 62 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDM 121
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 122 PLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 181
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 182 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 218
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 101/157 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + KL + REP EWA +
Sbjct: 70 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPHDREWAAVASM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 130 PLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 226
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 108/156 (69%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D++DPLR F + +LL+A EE EL IQDL++LE+ + +L+ +FG EP+ +WA A
Sbjct: 252 DQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAA 311
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
G+ L+ L+ G ++K+I +N+RLV+ +AK YQG G++L DL+QEG GL++ E
Sbjct: 312 AGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAE 371
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
KF G +F++YA+WW++Q +RK++ SRTIRLP
Sbjct: 372 KFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLP 407
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LL+ +EE ++Q LI LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP +EWA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T++ KAS K + D +R +L LLT ++E ++Q L+ + E K
Sbjct: 5 TFSDTKASNTNKAT-----TDTVRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEK 59
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L + R PTL EWA + LS ++L +L+ G ++ K+I ANLRLVV +AKQYQ R +
Sbjct: 60 LTIELKRTPTLSEWANQMQLSEQELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLE 119
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L DL+QEG++GL + VEKF P G RF++YAYWW+RQ I +AI Q R IRLP+
Sbjct: 120 LMDLIQEGTLGLERGVEKFNPALGYRFSTYAYWWIRQGITRAIAQQGRAIRLPI 173
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 110/173 (63%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 50 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 105
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 106 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 165
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 166 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 218
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LLT +EE ++Q I++EK K LQ + G EPT +WA A
Sbjct: 8 NDLVRSYLKEIGRVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ +L++ + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ITVEELRNIIQAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 110/171 (64%), Gaps = 8/171 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW-AKA- 311
D +RL+L LL DEE L ++QD ++L + +LQ + GR+PTL EW AKA
Sbjct: 45 TDLVRLYLQEIGRVPLLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKAN 104
Query: 312 -----IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
L+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 105 QYPEWAQLTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 164
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P+ G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 165 ERAVEKFDPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 215
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL +I DL+ LE+ + KL EP EWA A+ +
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDM 140
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 141 ALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 201 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+R +L LL+ +EE ++Q L+ LEK + ++ + G+EPT +WAKA L
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ S + +G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 110/173 (63%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 65 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 120
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 121 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 180
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 181 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 233
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 9 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 68
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 69 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEK 128
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
F P G RF++YAYWW+RQ I +AI + +RTIRLP+ +T L+ I
Sbjct: 129 FDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKI 173
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT +EE L QIQ+L+ LEK++ L+ + REP+ EWA+A +
Sbjct: 9 DTIRVYLKEIGRIPLLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L ++ G ++ K++ ANLRLVV +AK+Y + L DL+QEG++G+ + VEKF
Sbjct: 69 SEKNLDIKISRGEKAKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P+ G RF++YAYWW+RQ I +AI + SR IRLP+ +T L+ I
Sbjct: 129 PKKGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKI 171
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 110/173 (63%), Gaps = 4/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A KKK D +RL+L +LL ADEE EL +I DL+ LE+ + KL
Sbjct: 65 RRAQTKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLIEH 120
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ REP EWA A+ + + + L G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 121 YHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 180
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 181 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 233
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L++ + L SQ GREPTL EWAK
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESK 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L DL + G ++ +++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LDIADLNDAIADGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT +EE IQ+L+ LEK+K L + EPTL EWAKA +
Sbjct: 9 DTIRVYLKEIGRIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKI 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L+ ++ G ++ +++ ANLRLVV +AK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SEKNLQIKITQGEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SR IRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRAIRLPLHITEKLNKI 171
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G ++D +R +L+ +LL EE EL Q+ L+ LE+ + + Q G+ PT +EWA
Sbjct: 401 GERKDDTIRSYLYEIGRYQLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWA 460
Query: 310 KAIGLS--CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+ G L+ + G S++E+++ ANLRLVV +AK+Y RG++L DL+QEGS+GL+
Sbjct: 461 RGCGYGEDVEALRKHIRDGRSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLI 520
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ VEKF G RF++YA WW+RQ+I +AI SR+IRLPV
Sbjct: 521 RGVEKFDAGRGFRFSTYATWWIRQSITRAISDSSRSIRLPV 561
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 9 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 68
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 69 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEK 128
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
F P G RF++YAYWW+RQ I +AI + +RTIRLP+ +T L+ I
Sbjct: 129 FDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKI 173
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE Q+Q LI LEK K L+ + G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q GREP ++WA ++ L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L +G+ ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 104/141 (73%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGN 327
LLT ++E L Q+Q+L+RLE+ + +L+ + G ++P+ EWA A GLS LK +L SG
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGR 93
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 154 WIRQGITRAIAEKSRTIRLPI 174
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
+D +R +L LLT +EE L ++Q ++L++ + LQS+ G R+P+ +EWA A
Sbjct: 15 SDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAA 74
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS +L+ + H G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 75 GLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEK 134
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
F P G RF++YAYWW+RQ I +AI + +RTIRLP+ +T L+ I
Sbjct: 135 FDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKI 179
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL+ +EE Q+Q LI LEK K L+++ G +P+ +W++A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S L+ EL +G+ ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 112/173 (64%), Gaps = 5/173 (2%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+ S KK +E D +R++L +LL A+EE EL +I DL+ LE+ +L+ +
Sbjct: 53 RETSKKKPYTE-----DSIRVYLQEIGRIRLLRAEEEIELARKIADLLELERIYEQLRKR 107
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
GR P EWA+A+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL
Sbjct: 108 LGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 167
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 168 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 220
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K+ L + GR+PT EWA+A G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ +H+G ++ ++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 LSETELQRTIHAGERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSSLN 428
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I + Y+ L
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQKLG 184
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 1/177 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQTMMNLLEKKEELAQRVG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EP++ EWAK + + + L+ L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPSIQEWAKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 103/162 (63%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EWA
Sbjct: 156 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWA 215
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 216 ALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 275
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 276 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 317
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L S+ G EP+L EWA + L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+L + GN ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 GEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 105/162 (64%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+E ++ +S+ G P++ EWA
Sbjct: 103 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWA 162
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 163 VLADMPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 222
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 223 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 264
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 101/155 (65%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE Q+Q L++ + +L +Q GREP++ EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ DL + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 INSADLLGAIADGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D D +R +L LLT ++E +++ L L++ K L Q GREPT EWA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
L+ LKS + G S++ K++ ANLRLVV VAK+Y R + L DL+QEG++GL + VE
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVE 125
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
KF P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 126 KFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 135 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEW 194
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 195 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 254
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 255 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 297
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 105/162 (64%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+E ++ +S+ G P++ EWA
Sbjct: 103 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWA 162
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 163 VLADMPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 222
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 223 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 264
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q LI+L+ + +L Q R+P EW+ A
Sbjct: 8 KDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ LH G +++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+++ KL + R P EWA ++ +
Sbjct: 66 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEM 125
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L+ G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 126 ELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 222
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 110/164 (67%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q + L+ ++KL++ REP+ +EWA+A G
Sbjct: 8 SDLVRTYLKEIGRVPLLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L + +G+ ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISVDELTQAMDAGDLAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPLKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 135 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEW 194
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 195 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 254
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 255 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 297
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +EK+ L + GR+PT EWA+A+G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ + G ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 172
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L + G+EP L EWA + +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNSKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EP+ EWAKA+ L +LK + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE L ++Q + L++ K L REP EWA+A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L+ + +G +++EK++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K +L G+EP+L EWAK + L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L L G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 EEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE L Q+Q L LEK + L + R PT EWA A+ LS L + + +G++
Sbjct: 22 LLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDT 81
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 82 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 141
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 142 IRQAITRAIAEKSRTIRLPIHITEKLNKI 170
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 102/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+L+ LE +S+L+S+ G +P+ + AKA GLS LK +L G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 160 IRQGITRAIAEKSRTIRLPI 179
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+ VKKK D +RL+L +LL ADEE EL +I DL+ +E+ + +L +
Sbjct: 91 RRTQVKKKHYT----EDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLCQE 146
Query: 299 FGREPTLIE-----WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
G +E WAK +G++ + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 147 LGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRGL 206
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 207 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 264
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +EK L + GR+PT EWA+A+G
Sbjct: 9 TDSVRAYLREIGRVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVG 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ + G ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 129 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 172
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL QI DL+ LE ++ GR PT EWA A +
Sbjct: 80 DSIRVYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDI 139
Query: 315 -SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 140 PNMRQFNRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 200 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 6/173 (3%)
Query: 250 GFDRN-----DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
G D+ D +R +L LL+ ++E Q+Q ++ L +K +L REPT
Sbjct: 8 GMDKKKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPT 67
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
L EWA+A + +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+QEGS+
Sbjct: 68 LEEWAQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSL 127
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 128 GLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 142 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEW 201
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 202 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 261
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 262 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 304
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL DEE +L +I L+ E K L+ + REPT EW A
Sbjct: 112 DDSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACK 171
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+S R +S LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+QEGS+GL+++ EK
Sbjct: 172 VSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 231
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
F + G +F++YA WWV+Q + +AI HSRTIRLPV ++
Sbjct: 232 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYD 271
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q +++L + K L + GRE +L EW + +GL
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +LK + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 AETELKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L ++K +L Q REP+L EWA + +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EPT+ EW+K + + + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q SRTIRLP+ +T L+ I
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKI 180
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 1/172 (0%)
Query: 246 KLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL 305
K +G D +R +L LLT +EE Q+Q L+ + L QF R PT
Sbjct: 15 KAKQGTLSADMVRTYLHEIGKIPLLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQ 74
Query: 306 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
EWA+A+GL L L G ++ K+I ANLRLVV VAK+YQ R + L DL+QEG++G
Sbjct: 75 EEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLG 134
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
L ++V+KF P G +F++YAYWW+RQ I +AI Q +RTIRLPV +T L+ I
Sbjct: 135 LERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKI 186
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 122/195 (62%), Gaps = 1/195 (0%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ + S TN ++ S + KK++ ++ D +DPLR T +LLT
Sbjct: 218 RQTERKARRVRASGKAATNIVSFRSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTT 277
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE + IQDLI+LEK + L + G +PT +WA G+ + L+ L+ G +EK
Sbjct: 278 SEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 337
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +N+RLV+ VAK YQG G+SL DL+QEG GL++ EK+ G +F++YA+WW++Q
Sbjct: 338 MIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQA 397
Query: 393 IRKAIFQHSRTIRLP 407
+RK++ SRTIRLP
Sbjct: 398 VRKSLSVQSRTIRLP 412
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 12/185 (6%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
++ +P VT YN+ A +DP+ LLTA EE EL ++Q
Sbjct: 26 EIDRPTVTPSSAYNNWSA------------DDPVGALFKEMARYPLLTATEEVELARRVQ 73
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
+L+ L++ + +LQ + R PT E A A+G+S L+ H S++ K+I++NLRLVV
Sbjct: 74 ELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQSAKRKMISSNLRLVVS 133
Query: 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403
+AK+Y RG+ DL+QEG++GL ++ EKF P+ G +F++YAYWW+RQ I + I RT
Sbjct: 134 IAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWWIRQGITRTIANQGRT 193
Query: 404 IRLPV 408
IRLPV
Sbjct: 194 IRLPV 198
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 102/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ Q G + E AKA GLS LK +L SG
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 145 IRQGITRAIAEKSRTIRLPI 164
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L +++ L + GRE T EWA A L+ +L + L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF P G +F++YAYWW
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWW 133
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 134 IRQAITRAIAQQARTIRLPIHITEKLNKI 162
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L+ L K+ L +FGREP+L EWA A
Sbjct: 8 TDTVRTYLREIGRVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAAN 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ L+ + +G +++ +++ ANLRLVV VAK+Y R I L DL+QEG++G+ + VEKF
Sbjct: 68 IDELQLQKTISAGENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + +R IRLP+ +T L+ I
Sbjct: 128 DPSKGYRFSTYAYWWIRQAITRAIAEKARAIRLPIHITEKLNKI 171
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 102/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ Q G + E AKA GLS LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 160 IRQGITRAIAEKSRTIRLPI 179
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E L Q+Q L+RL + L ++ GREPTL E A
Sbjct: 15 TDMVRTYLHEIGRVPLLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAE 74
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ L L G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 75 MPPEKLNLALRKGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 134
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 135 DPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 178
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 3/160 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG---REPTLIEWAKA 311
D +RL+L +LL ADEE EL +I DL++LE ++ +L Q + L +WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+ + K+ LHSG +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ E
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 199
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
KF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 200 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 119 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEW 178
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 179 AALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 238
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 239 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 281
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L+ K L + G EPTL EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L S +++G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSPSELNSHINAGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSSLN 428
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I + Y+ +L
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRYLAQNLG 183
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 103/157 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 245
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 103/157 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 245
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 93/140 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L + K L + GREP+ EWA+A LS L L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L +Q L++LE + L REPTL EWA+A LS LK + G
Sbjct: 23 LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEALKKTVEIGQQ 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K++ +NLRLVV +AK+Y+G + + DL+QEGS+GL + VEKF P G RF++YAYWW
Sbjct: 83 AKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI RTIRLP+
Sbjct: 143 IRQAITRAIADTGRTIRLPI 162
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + ++ + R P+ EWA+ + +
Sbjct: 62 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPSDAEWAEEVNM 121
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 122 RLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 181
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 182 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 218
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 93/140 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q ++ L + K L + GREP+ EWA+A LS L L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI Q RTIRLP+
Sbjct: 169 IRQAITRAIAQQGRTIRLPI 188
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 103/157 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL ADEE EL QI DL+ LE+ + +L Q R P+ EWA A+
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 193
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 194 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 230
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 101/155 (65%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE Q+Q L++ + +L +Q GREP++ EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L+ DL + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LNPADLLEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ ++K +L + G
Sbjct: 4 ANVNTKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+EPT+ EW+K + + + L L G ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 KEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
A+V K + D +R +L LLT ++E Q+Q ++ L + K +L G
Sbjct: 4 ANVNSKTKQPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQG 63
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EP+ EWAKA+ L +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+Q
Sbjct: 64 TEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
EGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 124 EGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ + L
Sbjct: 22 DSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNL 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 82 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 142 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 184
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ + L
Sbjct: 22 DSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNL 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 82 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 142 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 184
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q G EPT +WA+ + L
Sbjct: 10 DSVRAYLREIGRVPLLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNL 69
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 70 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 129
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 130 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 172
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 12/182 (6%)
Query: 227 KPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+P VT YN+ A +DP+ LLTA EE EL ++Q+L+
Sbjct: 29 RPTVTRSSAYNNWSA------------DDPVGALFKEMARYPLLTAAEEVELARRVQELV 76
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
L++ + +LQ + R PT E A A+G+S L+ H S++ K+I++NLRLVV +AK
Sbjct: 77 ALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQSAKRKMISSNLRLVVSIAK 136
Query: 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
+Y RG+ DL+QEG++GL ++ EKF P+ G +F++YAYWW+RQ I + I RTIRL
Sbjct: 137 RYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWWIRQGITRTIANQGRTIRL 196
Query: 407 PV 408
PV
Sbjct: 197 PV 198
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 102/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+QDL+ +E +++L+S+ G +P+ + AKA GL+ LK +L G
Sbjct: 37 LLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 157 IRQGITRAIAEKSRTIRLPI 176
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q ++ L +++ + GREP+ EWA+ +
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIAETLGREPSQQEWAEGVQ 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS DL L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 77 LSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 137 DPSRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T++ KAS K + D +R +L LLT ++E ++Q L+ + E K
Sbjct: 5 TFSDTKASNTNKAT-----TDTVRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEK 59
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L + R PTL EWA + LS ++L +L+ G ++ K+I ANLRLVV +AKQYQ R +
Sbjct: 60 LTIELKRTPTLSEWANQMQLSEQELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLE 119
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L DL+QEG++GL + VEKF P G R +YAYWW+RQ I +AI Q R IRLP+
Sbjct: 120 LMDLIQEGTLGLERGVEKFNPALGYRKTTYAYWWIRQGITRAIAQQGRAIRLPI 173
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R++L LLT ++E Q+Q I L+ K L Q GREP+L EWAKA G
Sbjct: 12 TDLIRIYLREIGRVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASG 71
Query: 314 -LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
L L + G S++ K++ ANLRLVV +AK+Y R + L DL+QEG++GL + VEK
Sbjct: 72 KLDNTQLTQAIADGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQEGTIGLHRGVEK 131
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F P G R ++YAYWW+RQ I +AI Q+SR IRLP+
Sbjct: 132 FDPTKGYRLSTYAYWWIRQAITRAIAQNSRNIRLPI 167
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 98/155 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+PTL EWAKA
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATK 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LEPVELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 103/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 131 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 190
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 191 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 250
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 251 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 293
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L +LT ++E Q+Q ++ L+++K L + REPT E A L
Sbjct: 18 DMVRTYLHEIGRVPMLTHEQEIIYGKQVQQMMALQEKKEALAKKLNREPTDAELASHTNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +LK +H G +++K+I ANLRLVV +AK+YQ R + DL+QEG+MGL + VEKF
Sbjct: 78 SEDELKGIMHRGRRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTMGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
K ++++ + G D +R +L LLT +EE Q+Q L+ L++++ L+
Sbjct: 3 KVNLQQAPNNGKSSADMVRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESL 62
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
RE T EWA+A L+ + L+ +L G ++ K+I ANLRLVV +AK+YQ R + DL+
Sbjct: 63 DREATREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLI 122
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
QEGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 123 QEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LLT +EE L ++Q + L+ K L REP EWA A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ +L + +G +++EK++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 ITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q ++ L + + GREP+ EWA
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKAN 76
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS L+ LH G +++K+I ANLRLVV VAK+YQ R + L DL+QEG++GL + VEKF
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 137 DPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 96/140 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL QI+ L +E+ +S+L + GR P+ E A A+GL+ R L+ +LH
Sbjct: 109 LLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRV 168
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 169 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 228
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I SRTIRLPV
Sbjct: 229 IRQGITRTIANDSRTIRLPV 248
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q +++ +EK KL + EP+ EWA + L
Sbjct: 24 DTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVEL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 84 TEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWWVRQ I +AI Q+ RTIRLP+ +T L+ I
Sbjct: 144 PMRGYKFSTYAYWWVRQAITRAIAQNGRTIRLPIHITEKLNKI 186
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 103/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 127 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 186
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 187 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 246
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 247 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 289
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R+A+ KKK D +RL+L +LL ADEE EL +I DL+ LE+ + ++ Q
Sbjct: 55 RRATAKKK----HYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQ 110
Query: 299 FGREPTLIE-----WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
+P +E WA + ++ + L G ++EK++ +NLRLVV +AK+Y RG+
Sbjct: 111 LDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 170
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 171 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 228
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 101/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+L+ LE +++L+S+ G +P+ AKA GLS LK +L G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 160 IRQGITRAIAEKSRTIRLPI 179
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 100/157 (63%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
D +D + F LL ADEE EL ++Q L+ ++ + L S+ R T E A A
Sbjct: 68 DSDDAVGAFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQESLSSKLNRRATQAETAAA 127
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
GL+ R L+ +L+ G ++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ E
Sbjct: 128 FGLTERQLEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQEGAMGLNRATE 187
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
KF P G +F++YAYWW+RQ I +AI +RTIRLP+
Sbjct: 188 KFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPI 224
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 102/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ + G + E AKA GLS LK +L SG
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 145 IRQGITRAIAEKSRTIRLPI 164
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 103/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 148 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEW 207
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 208 AALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 267
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 268 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 310
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E L E AKA GLS LK +L +G
Sbjct: 59 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 118
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 119 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 178
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 179 WIRQGITRAIAEKSRTIRLPI 199
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL IQ L +E+ +++ + + GR P E A A+GL+ R L+ LH
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 186
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 187 IRQGITRTIANDARTIRLPI 206
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q + L K++++ G++P+ EWA A L
Sbjct: 18 DAVRTYLHEIGRVPLLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L +LH G ++ ++I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 DTATLTQQLHEGEQAKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PMKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L +K KL+ + G+E +L EWA + L
Sbjct: 18 DLVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEK+
Sbjct: 78 SEAELDRAIKQGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 103/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 134 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEW 193
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 194 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 253
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 254 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 296
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 100/140 (71%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+QDL+ LE +++L+S G +P + +A GLS LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SR+IRLP+
Sbjct: 160 IRQGITRAIAEKSRSIRLPI 179
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
++VKK+ G + D +R +L LL ++E Q+Q ++ L + K L +
Sbjct: 2 STVKKESDNGKTKLTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMILVEAKEALAKE 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G EP+L EWA + S DLK ++ +G +++K+I ANLRLVV +AK+YQ R + DL
Sbjct: 62 LGYEPSLSEWAIYVNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 122 IQEGTLGLERGVEKFDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI-EWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E L E AKA GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 105/161 (65%), Gaps = 4/161 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG----REPTLIEWAK 310
D +RL+L +LL ADEE EL +I DL+ LE+++ +L ++ G E + +WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
+ + + L+ G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 217
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 218 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 258
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 96/140 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE EL Q+Q L+ +++ +L + GR+PT E A+A+ L+ R ++ L+ G
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQI 135
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 136 SKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWW 195
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 196 IRQAITRTIANDARTIRLPI 215
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E EWAKA G+S LK +L +G
Sbjct: 22 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGR 81
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 82 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 141
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 142 WIRQGITRAIAEKSRTIRLPI 162
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L Q REPT EWA + +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDI 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L + G +++K+I ANLRLVV +AK+YQ R + DL+QEG+MGL + VEKF
Sbjct: 78 AAAELPETIKRGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 180
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 99/155 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE + Q+Q L + + L +Q GREP+L EWA A
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAAN 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G +++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LEVAELNDAIADGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 100/158 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q ++ L K +L + EPTL EWA +
Sbjct: 29 DDIVRSYLQEIGRVDLLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVE 88
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L+ +L G+ +++K+I ANLRLVV VAK+YQ R + DL+QEG++GL + V+KF
Sbjct: 89 LGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKF 148
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
P G +F++YAYWW+RQ I +AI Q RTIRLP+ F
Sbjct: 149 DPALGYKFSTYAYWWIRQGITRAIAQQGRTIRLPIHVF 186
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 100/140 (71%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+QDL+ LE +++L+S G +P + +A G+S LK +L SG
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRR 99
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SR+IRLP+
Sbjct: 160 IRQGITRAIAEKSRSIRLPI 179
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S + D +R +L LLT +EE Q+Q +++L + K L ++ R+ T E
Sbjct: 18 SRPYSSTDTVRTYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQE 77
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + L+ +L LH G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL
Sbjct: 78 WAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 137
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+ VEKF P G +F++YAYWW+RQ I +AI QH+RTIRLP+ +T L+ I
Sbjct: 138 RGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKI 187
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 103/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EW
Sbjct: 187 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEW 246
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 247 AALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 306
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 307 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 349
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 1/170 (0%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S + D +R +L LLT +EE Q+Q +++L + K L ++ R+ T E
Sbjct: 18 SRPYSSTDTVRAYLHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQE 77
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + L+ +L LH G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL
Sbjct: 78 WAAEMELTEPELSRILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 137
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+ VEKF P G +F++YAYWW+RQ I +AI QH+RTIRLP+ +T L+ I
Sbjct: 138 RGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKI 187
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L LLT ++E Q+Q L L K L ++ GR P+ EWA+A
Sbjct: 8 SDLVRTYLREIGRVPLLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +LK + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSSAELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S D+K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETDVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 98/140 (70%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT++EE L Q+Q I L K +L + R+PTL EW+ L+ +L +++ G
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV +AK+YQ R + DL+QEG++GL ++V+KFKP G +F++YAYWW
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQEGTLGLERAVDKFKPSLGYKFSTYAYWW 154
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI Q SRTIRLP+
Sbjct: 155 IRQGITRAISQQSRTIRLPI 174
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 102/162 (62%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ + +S+ G P+ EWA
Sbjct: 110 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWA 169
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 170 ALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 229
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 230 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 271
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 112/179 (62%), Gaps = 3/179 (1%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
++VKK+ G + D +R +L LL ++E Q+Q ++ L + K L +
Sbjct: 2 STVKKESDNGKTKLTADMVRTYLREIGRVPLLNREQEIIYGKQVQQMMLLLEVKEALTKE 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G EP+L EWA + S DLK ++ +G +++K+I ANLRLVV +AK+YQ R + DL
Sbjct: 62 LGYEPSLSEWAIYVNQSENDLKHKISTGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 122 IQEGTLGLERGVEKFDPTMGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 114/185 (61%), Gaps = 4/185 (2%)
Query: 229 QVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL 288
++ N E K+ + L + +D +R +L +LL +EE +L +I L+
Sbjct: 107 EIINDEDERDSKSQTVRGLQKA---DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHW 163
Query: 289 EKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347
E K L+ + REPT EW A +S + ++ LH+ ++E+++ ANLRLVV +AK+
Sbjct: 164 EHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKR 223
Query: 348 YQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
Y RG+SL DL+QEGS+GL+++ EKF + G +F++YA WWV+Q + +AI HSRTIRLP
Sbjct: 224 YVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLP 283
Query: 408 VMTFN 412
V ++
Sbjct: 284 VHLYD 288
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 106/164 (64%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE ++Q L+ LEK K +L+ + E + EWAKA
Sbjct: 8 TDSVRSYLKEIGRVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAAN 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ L+ ++ +G ++ K+I ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 VTVAKLRKDVDAGEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL +EE +L +I L+ E K L+ + REPT EW A
Sbjct: 129 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 188
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+S + +S LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+QEGS+GL+++ EK
Sbjct: 189 VSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 248
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
F + G +F++YA WWV+Q + +AI HSRTIRLPV ++
Sbjct: 249 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYD 288
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 103/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S G+ P EW
Sbjct: 124 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEW 183
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 184 AALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 243
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 244 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 286
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE L Q+Q L+ L S L REPT EWA A G+S +L + + +G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 123 IRQAITRAIAEKSRTIRLPIHITEKLNKI 151
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 100/163 (61%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + S G P EW
Sbjct: 145 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEW 204
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 205 ASLVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 264
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 265 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 307
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L++++++L Q EPT +WA+ + L
Sbjct: 22 DSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNL 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S L+ LH G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 82 SVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 142 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 184
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ + K L + REPT+ EWA + +
Sbjct: 19 DMVRTYLREIGRVPLLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKM 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S DL + G +++K+I ANLRLVV +AK+YQ R + DL+QEG+MGL + VEKF
Sbjct: 79 SEADLHDTVRRGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFD 138
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 139 PTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 181
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K KL Q R+PT EW + I +
Sbjct: 23 DTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINI 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ L +LH G +++K+I ANLRLVV +AK+YQ + DL+QEGS+GL + VEKF
Sbjct: 83 GEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++Y YWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 143 PTKGYKFSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKI 185
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ +EE Q+Q L L++ L GREPTL+EWA+A LS +L+ + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 144 IRQAITRAIAEKGRTIRLPIHITEKLNKI 172
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 104/157 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L +LL A+EE EL +I DL+ LE+ + +++ + RE + EW K + +
Sbjct: 70 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDELDREISDAEWGKEVDM 129
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R + L G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 130 ELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 189
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 190 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 226
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+++ +LQ R PT +EWA+A+GL R L++ L+ G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGR 132
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
S++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 133 SAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 193 WIRQAITRTIANDARTIRLPI 213
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 102/162 (62%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ ++ G P EWA
Sbjct: 155 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEWA 214
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 215 TLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 274
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 275 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 316
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K KL Q GRE EWA+ + +
Sbjct: 18 DMVRTYLHEIGRVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQM 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+L+ G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 DPEELEKTQQKGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PTKGFKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+YN KK +E D +R +L LLT ++E L Q+Q+LI LEK + +
Sbjct: 3 SYNPLIVPAKKSATE----IDLVRSYLRDIGRVPLLTNEQEITLGRQVQELISLEKLERE 58
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L+S G++P+ + A G+S R+L L G ++E++++ANLRLVV VAK+Y R +
Sbjct: 59 LESTNGKKPSKEDLAIDAGISVRELSKRLKRGVRAKERMVSANLRLVVSVAKKYTKRNME 118
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 119 LLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSRIIRLPI 172
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S D+K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETDVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 105/171 (61%)
Query: 238 SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
S+ VK K +E D +R++L LLT ++E Q+Q ++ + K +L
Sbjct: 6 SQPTKVKSKNNEFSSTADAVRIYLHKIGRIPLLTHEQEIFFAKQVQQMMVMLTAKEELSE 65
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
+ REPT EWA + L L +L G +++K+I ANLRLVV +AK+YQ R I D
Sbjct: 66 KLQREPTRQEWADKMQLEEDMLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNIEFLD 125
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q SRTIRLP+
Sbjct: 126 LIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPI 176
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q+SRTIRLP+ +T L+ I
Sbjct: 143 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKI 185
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 197
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 198 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E E AKA GLS LK +L +G
Sbjct: 59 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 118
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 119 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 178
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 179 WIRQGITRAIAEKSRTIRLPI 199
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 101/155 (65%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R +L LL+ D+E L +Q+L+ LE + QS G++P L E A A G
Sbjct: 25 NDLIRSYLRDIGRVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAG 84
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L+ LK + G ++E+++ ANLRLVV +AK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 85 LTVGALKKKFRLGERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKF 144
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 145 DPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 179
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+ L+ K L ++F R+PTL EWA+ L
Sbjct: 13 DLVRTYLREIGRVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKL 72
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+DL+ + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 73 EPQDLEEAIEKGEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFD 132
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 133 PSKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 175
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R +L +LL +EE +L +I L+ E K L+ + REPT EW A
Sbjct: 132 DDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACK 191
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+S + ++ LH+ ++E+++ ANLRLVV +AK+Y RG+SL DL+QEGS+GL+++ EK
Sbjct: 192 VSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEK 251
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
F + G +F++YA WWV+Q + +AI HSRTIRLPV ++
Sbjct: 252 FDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYD 291
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 82 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWA 141
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 142 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 201
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 202 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 243
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 102/158 (64%), Gaps = 2/158 (1%)
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
++D +R +L +LL EE EL Q+ L+ LE+ + + + G+ PT EWA+
Sbjct: 274 KDDTIRSYLREIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGC 333
Query: 313 GLS--CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
G L+ + G ++E+++ ANLRLVV +AK+Y RG++L DL+QEGS+GL++ V
Sbjct: 334 GYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGV 393
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EKF + G RF++YA WW+RQ+I +AI SR+IRLPV
Sbjct: 394 EKFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPV 431
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 100/163 (61%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + S G P EW
Sbjct: 128 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEW 187
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 188 AALVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 247
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 248 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 290
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 7/227 (3%)
Query: 203 PLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLW 262
PLE+++ + ER ++K E+ +R +V K F + + FL
Sbjct: 205 PLEDIRHLEKQ---EREILSMAITKEDAMLIESIVNRPTTVSTK---QFKKGSSMGAFLK 258
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
+ LL ++ L +I+ L + +L+ Q+GREP +EWAK++ +S +L
Sbjct: 259 EIGSVPLLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSSEELTRN 318
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +RE L+ ANLRLVV VAKQ+ RG+S+ DL+QEGS+GL+K E+F + G RF+
Sbjct: 319 LLRAQRARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRRGFRFS 378
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLS-PIYIFKFYVFSSLN 428
+YA WW+RQ +++AI SR IR+P +LS IY + + SSL
Sbjct: 379 TYAMWWIRQAMQRAIADTSRPIRIPSTISDLSVQIYRARLELSSSLG 425
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 98/140 (70%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + + ++ LQ Q G++PT ++ A + L+ + L+S L+ G
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E Q+Q ++ L + K L+ RE TL EWA+
Sbjct: 22 DMVRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADK 81
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ ++K +H G +++K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 82 TPNEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 142 PTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 184
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 197
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 198 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 100/146 (68%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLTADEE+ L +IQ +I+ E L S+ R PT+ EWA A G + D + +
Sbjct: 10 ELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTSR 69
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++++++ +N+RLVV +A++Y G+SL DL+QEGS+GL ++ EKF+P+ G +F++YA W
Sbjct: 70 EAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASW 129
Query: 388 WVRQTIRKAIFQHSRTIRLPVMTFNL 413
W++Q + ++I HSRTIRLPV NL
Sbjct: 130 WIQQAVFRSIAYHSRTIRLPVHVHNL 155
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GREPTL EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 LELTELNQAIADAEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 101/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+ LE+ +S+L+ + G + E AKA GLS LK +L G
Sbjct: 55 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQIGRR 114
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++++ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 115 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 174
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 175 IRQGITRAIAEKSRTIRLPI 194
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++LQ + G E E AKA GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L++ K L +Q REPTL EWA + G
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAG 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LESAELSKAIALGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L L + ++ L++ GREP+L EWA L
Sbjct: 9 DLVRTYLREIGRVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANL 68
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 69 SPGELNEIIQGGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 128
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+++ +LQ Q R P+ +EWA+A+GL R L++ L+ G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGR 132
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 133 AAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 193 WIRQAITRTIANDARTIRLPI 213
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L + REPTL EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+L +H G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 PEAELNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R++L LLT+D+E Q+Q +I +E+ K +L Q REPTL E A + S
Sbjct: 2 VRVYLQEIGQFPLLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSE 61
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
++ L G +++K+I ANLRLVV VAK+YQ R + DL+QEG++GL + +EKF P
Sbjct: 62 TEVNQILQQGQRAKQKMITANLRLVVSVAKKYQHRNLEFLDLVQEGAIGLQRGIEKFDPN 121
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSSLN 428
G + ++YAYWW+ Q I +AI + SRT+RLPV + L+ I + +F +LN
Sbjct: 122 RGYKLSTYAYWWISQAITRAIAEKSRTVRLPVHVNEKLNQIKKAQRELFQTLN 174
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 78 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 137
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 138 ELIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 197
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 198 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 100/154 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q ++ L+K+K L+ Q EP+ E AK + L
Sbjct: 13 DIVRNYLQDIVRVPLLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQL 72
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K G +++K++ ANLRLVV +AK+YQ R + L DL+QEGS+GL + VEKF
Sbjct: 73 SEIEVKDIFQQGTQAKQKMMVANLRLVVAIAKKYQRRNLELMDLIQEGSLGLERGVEKFD 132
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+ Q + +AI Q SRTIRLP+
Sbjct: 133 PTRGYKFSTYAYWWISQAMTRAISQQSRTIRLPI 166
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 140 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEW 199
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 200 AALVEMPVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 259
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 260 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 302
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
++D ++ ++ T +LTA EE L QI+ + +EK L+ GR+PT EW +
Sbjct: 71 QSDTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFV 130
Query: 313 GL-SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
GL S D++ L + S+ +INANLRLVV AK YQ RG+S DL+QEG+ GL K+ E
Sbjct: 131 GLKSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATE 190
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
KF P+ G RF++YA WW++Q I +A+ SR +RLPV
Sbjct: 191 KFDPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPV 227
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q L + + + KL ++ REPT EWA A +
Sbjct: 6 DLVRTYLREIGRVPLLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANI 65
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L++ + +G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 66 SEGELETIIENGERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFD 125
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 126 PTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 168
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 100/140 (71%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q L+ +E +++L+S+ G +P + AKA LS LK +L G+
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 157 IRQGITRAIAEKSRTIRLPI 176
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 100/140 (71%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q L+ +E +++L+S+ G +P + AKA LS LK +L G+
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 157 IRQGITRAIAEKSRTIRLPI 176
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+PTL EWA
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 LESTELNDIIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + +RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKI 171
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL +Q L++ E+ + +LQ P+ EWAKA+G + + LH G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 195 WIRQAITRTIANDARTIRLPI 215
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 79 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 138
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 139 ELIDMPLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 198
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 199 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 240
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE Q+Q L++ + L S+ R+PTL EWAKA L +L + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF P G RF++YAYWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ I +AI + +RTIRLP+ +T L+ I
Sbjct: 143 IRQAITRAIAEKARTIRLPIHITEKLNKI 171
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L EK+ L + REPT EWA +
Sbjct: 24 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNK 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +LK + G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 84 SEAELKKAIDQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +R IRLP+ +T L+ I
Sbjct: 144 PTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKI 186
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 1/176 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K L + R+P+L EWAKA
Sbjct: 22 TDIVRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L ++L L G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LDPQELNRLLGQGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSSLN 428
P G RF++YAYWW+RQ I +AI + +RTIRLP+ +T L+ I + Y+ +L
Sbjct: 142 DPSKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRYLSQTLG 197
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 117/195 (60%), Gaps = 2/195 (1%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRN-DPLRLFLWGPETRKLLTA 272
R E R+++ + + T T S KKK S+G +PL LW R+LLTA
Sbjct: 208 RQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLG-SLWKMTGRRLLTA 266
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE E IQDL++LE +++L G +PT +WA A G+ R L+ L G + +
Sbjct: 267 KEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNR 326
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
++ +N+RLV+ +A++++G G+ L+DL+QEG GL++ EKF G RF++Y++WW++Q
Sbjct: 327 MVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQA 386
Query: 393 IRKAIFQHSRTIRLP 407
+RK++ + S+ RLP
Sbjct: 387 MRKSVSEQSQIFRLP 401
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 25 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGL 84
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 85 SESEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 144
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q+SRTIRLP+ +T L+ I
Sbjct: 145 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKI 187
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 106/162 (65%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 79 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 138
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ I + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 139 ELIDMPLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 198
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 199 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 240
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL +Q L++ E+ + +LQ P+ EWAKA+G + + LH G
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 188
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 189 WIRQAITRTIANDARTIRLPI 209
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + G EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SENEVTQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 101/162 (62%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ + +S+ G PT EWA
Sbjct: 123 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWA 182
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 183 ALVNMPMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 242
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 243 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 284
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + R+PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 SESEMTDIINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q+SRTIRLP+ +T L+ I
Sbjct: 143 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKI 185
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 101/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL+ ++E L Q+Q+L+RLE+ +++ + + G EP+ E A + G+S L+ L +G
Sbjct: 29 LLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELASSFGISPAVLRRRLINGRR 88
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 89 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 148
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 149 IRQGITRAIAEKSRTIRLPI 168
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 96/140 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L+ +E+ + LQ Q R+P E +G+S + L+ +L+ G
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 221
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 222 IRQAITRAIANDARTIRLPI 241
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 2/161 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE--WAKAI 312
D +R +L + LL A +E EL +IQDL+ LE + L + G L E WA A
Sbjct: 201 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAA 260
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL+ L+ LH G +++ ++I ANLRLVV +AK+Y +S DL+QEG +GL++ EK
Sbjct: 261 GLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQEGCVGLIRGAEK 320
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
F Q G +F++YA+WW+RQ + ++I SRTIRLPV F +
Sbjct: 321 FDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 361
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ +EE Q+Q ++ L + + K+ R PT EWA+A+GL
Sbjct: 27 DMVRTYLHEIGKIPLLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGL 86
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L S + G ++ K+I ANLRLVV VAK+YQ R + L DL+QEG++GL ++V+KF
Sbjct: 87 EPEILHSNIRIGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFD 146
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLPV +T L+ I
Sbjct: 147 PTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPVHITEKLNKI 189
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGN 327
LLT ++E L Q+Q+L+ LE+ + +L + G P+ E AKA GLS LK L +G
Sbjct: 34 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 93
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 154 WIRQGITRAIAEKSRTIRLPI 174
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 97/140 (69%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT++EE L ++Q + L K +L + R+PTL EW+ L+ +L ++ G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I ANLRLVV +AK+YQ R + DL+QEG++GL ++V+KF+P G +F++YAYWW
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQEGTLGLERAVDKFQPALGYKFSTYAYWW 163
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI Q SRTIRLP+
Sbjct: 164 IRQGITRAISQQSRTIRLPI 183
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 101/163 (61%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + + G P EW
Sbjct: 144 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEW 203
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + +S + L G ++ K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 204 AALVEMSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 263
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 264 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 306
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL DEE +L ++ L E+ + +LQ Q GR PT EWA +GL + + L S L+ G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 185
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 186 WIRQAITRTIANDARTIRLPI 206
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 104/163 (63%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ ++ +S GREP EW
Sbjct: 163 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEW 222
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 223 AALVEMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 282
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 283 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 325
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 100/162 (61%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL+ LE+ + + G+ P EWA
Sbjct: 86 GVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWA 145
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 146 VLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 205
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 206 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 247
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+QDL+ LE +S+L+S+ G E E AK GLS LK +L +G
Sbjct: 45 LLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAPEALAKKAGLSGVQLKRKLQAGR 104
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 105 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 164
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 165 WIRQGITRAIAEKSRTIRLPI 185
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 102/163 (62%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE++ ++ ++ G P EW
Sbjct: 116 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEW 175
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 176 AAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 235
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 236 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 278
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
D +R +L LLT ++E L Q+Q+L+ LE+ + +L + G P+ E AKA
Sbjct: 3 GDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAA 62
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GLS LK L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEK
Sbjct: 63 GLSPAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 122
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F P G +F++YAYWW+RQ I +AI + SRTIRLP+
Sbjct: 123 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 158
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A EE EL +Q L++ E+ + +L+ + R PT EW +A+G + + LH G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 189
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 190 WIRQAITRTIANDARTIRLPI 210
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q+Q L L+ + L ++ REPT EWA+A G+S DL+ + G
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF P G RF++YAYWW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 143 IRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + +PT EW+ GL
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q+SRTIRLP+ +T L+ I
Sbjct: 143 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKI 185
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 97/140 (69%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE +L +Q L+ +++ + +LQ+ GR+P E A+ + ++ R L++ L+ G
Sbjct: 79 LLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P+ G +F++YAYWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKGYKFSTYAYWW 198
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 199 IRQAITRTIANDARTIRLPI 218
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 89/140 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE Q+Q I L+ K LQ+ REPTL EWA LS L+ EL G+
Sbjct: 23 LLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI + RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L +++ + +L + G EP L EWA A
Sbjct: 8 KDLVRAYLREIGRVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAK 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS +L+ ++ G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSEAELQGVVNRGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A+EE EL Q+Q L+ +E+ K +L+ + R P+ E A+A+G + + + LH G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 195 WIRQAITRTIANDARTIRLPI 215
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q R+P L EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQ 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +L + G +++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 IELVELNEAIAEGETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + +RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKI 171
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 95/155 (61%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q GR+P L EWA A
Sbjct: 39 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATK 98
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 99 LETTALNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 158
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 159 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 193
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 8/155 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+RL+L LL +EE L RL +E+ +L Q G + L WA G
Sbjct: 19 SDPIRLYLREIGRVDLLRQEEEILLA-------RLVQEREELLRQRG-DGELTAWAGRCG 70
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ DL+ LH G ++E+++ ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VE++
Sbjct: 71 VPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVERY 130
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P+ G RF++YAYWW+RQ I +A+ SRTIRLPV
Sbjct: 131 DPRRGFRFSTYAYWWIRQGITRALASQSRTIRLPV 165
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Query: 242 SVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGR 301
S KKK S+G +PL LW RKLLTA EE EL IQDL++LE + +L G
Sbjct: 225 SSKKKRSKGPSTMNPLG-SLWKMTGRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGG 283
Query: 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQE 361
+PT +WA A G L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+QE
Sbjct: 284 QPTFPQWAAAAGTDENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQE 343
Query: 362 GSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G GL++ EKF G RF++Y++WW++Q +RK++ + ++ RLP
Sbjct: 344 GMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLP 389
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL+A+EE EL ++ L+ E+ + KLQ R PT EWA A+ L R L++ L+ G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL +EE EL ++ +++ E+ + +L+ Q R+PT EW KA+ L S R L++ L+ G
Sbjct: 69 LLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGR 128
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 129 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 188
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 189 WIRQAITRTIANDARTIRLPI 209
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+QDL+ LE +S+L+S+ G + E AK GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 96/140 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE EL +++ ++ E+ + +LQ++ R+P E A +G+S R L+ L+ G
Sbjct: 86 LLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRV 145
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 146 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFSTYAYWW 205
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 206 IRQAITRAIANDARTIRLPI 225
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 236 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 294
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 295 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
EG GL++ EKF G RF++Y++WW++Q +RK++ + S+ RLP
Sbjct: 355 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLP 401
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LL +EE EL ++ L+ E+ + +LQ F R PT EWA+A+ ++ R L++ L+ G
Sbjct: 76 LLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 CAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 105/162 (64%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D +R++L +LL DEE EL +I DL++LE+ ++ +S+ G P++ EWA
Sbjct: 81 GIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWA 140
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++
Sbjct: 141 ELTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 200
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 201 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 242
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKK 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SESEVKQTVQQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 236 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 294
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 295 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
EG GL++ EKF G RF++Y++WW++Q +RK++ + S+ RLP
Sbjct: 355 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLP 401
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 105/164 (64%), Gaps = 2/164 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL-EKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE QIQ ++ L E +KS + + G + EWAKA
Sbjct: 8 DSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAAD 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS R+L+ + G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 LSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LL DEE L +++ ++ E + L Q R P+ EWA+AIGLS R+L+ L+ G
Sbjct: 76 LLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGK 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 242 SVKKKLSEGFDRN-DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S KKK S+G +PL LW R+LLTA EE E IQDL++LE +++L G
Sbjct: 235 SSKKKRSKGASSGTNPLG-SLWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNG 293
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
+PT +WA A G+ R L+ L G + +++ +N+RLV+ +A++++G G+ L+DL+Q
Sbjct: 294 GQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 353
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
EG GL++ EKF G RF++Y++WW++Q +RK++ + S+ RLP
Sbjct: 354 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQSQIFRLP 400
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 96/154 (62%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT DEE Q+Q ++ L K L + +P+L EWA + L
Sbjct: 18 DMVRTYLREIGRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+++ + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 PEKEVTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI Q RTIRLP+
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REPT+ EW +
Sbjct: 21 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNT 80
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G +++K+I ANLRLVV +AK+YQ R + DL+QEG+MGL + VEKF
Sbjct: 81 SEAELNDLIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFD 140
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 141 PIRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 183
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q G EPT+ EWA A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASD 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +L + G ++ K++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 IEVSELNQAIAVGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + +RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKI 171
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 101/161 (62%), Gaps = 2/161 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL--QSQFGREPTLIEWAKAI 312
D +R +L + LL A +E EL +IQDL+ LE + L ++ G E T +WA A
Sbjct: 15 DSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAA 74
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL+ + L L G S++ ++I ANLRLVV +AK+Y +S DL+QEG +GL++ EK
Sbjct: 75 GLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAEK 134
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
F Q G +F++YA+WW+RQ + ++I SRTIRLPV F +
Sbjct: 135 FDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 175
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE ++Q ++ L + + +L + +PT EW+ GL
Sbjct: 85 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 144
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ ++ G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 145 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 204
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q+SRTIRLP+ +T L+ I
Sbjct: 205 PMRGYKFSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKI 247
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 43 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQ 102
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 103 SETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 162
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 163 PTRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 205
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q+L+RL E+ L+ + RE T EWA+AI L
Sbjct: 18 DMVRTYLREIGRVPLLTHEEEIVYGKQVQELMRLLAERETLEERLERESTFSEWAEAIKL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++L+ + G ++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 78 SEKELRRAVAVGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 119/198 (60%), Gaps = 2/198 (1%)
Query: 232 NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291
N E N +K K + + D +R +L LLT +EE Q+Q +++ +
Sbjct: 5 NQENKNQKKTQTKFGPT-TYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLEL 63
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
K KL+ + R TL+EWA+ + +S + LK + G +++K+I ANLRLVV +AK+YQ R
Sbjct: 64 KEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKR 123
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MT 410
+ DL+QEG++GL + VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T
Sbjct: 124 NMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 183
Query: 411 FNLSPIYIFKFYVFSSLN 428
L+ I + + SL
Sbjct: 184 EKLNKIKRVQRELIQSLG 201
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 98/154 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT +EE Q+Q +I L+ +K L+ Q EP+ E A+ + L
Sbjct: 18 DIVRNYLQDIVRVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K G +++K+I ANLRLVV +AK+YQGR + DL+QEGS+GL + VEKF
Sbjct: 78 SEMEVKEIFQKGVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQEGSLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YAYWW+ Q + +AI Q SRTIRLP+
Sbjct: 138 STRGYKFSTYAYWWISQGMTRAISQQSRTIRLPI 171
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L+ L KS L ++ G EP +WA+A
Sbjct: 8 TDTVRAYLREIGRVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L ++L+ + + ++ K++ ANLRLVV VAK+Y R I L DL+QEG++G+ + VEKF
Sbjct: 68 LEEQELQQAIATAELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + +R IRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKARAIRLPIHITEKLNKI 171
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E A A GLS LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 97/140 (69%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + + ++ L + G+EPT +E A + ++ + L+S L+ G
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 200 IRQAITRAIANDARTIRLPI 219
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L + K L REPT+ EWA + L
Sbjct: 43 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDL 102
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
LK ++ G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 103 EESALKKIINQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 162
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +R IRLP+ +T L+ I
Sbjct: 163 PTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKI 205
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 97/155 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT +EE Q+Q L + + L +Q G +PTL EWA +
Sbjct: 22 TDLVRTYLREIGRVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +L + + G ++ +++ ANLRLVV VAK+Y R I L DL+QEGS+G+ + VEKF
Sbjct: 82 VEPVELNTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 142 DPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q+Q ++ L +KS+L+ Q RE +L EW+++ +S +L L G
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF P G +F++YAYWW
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYAYWW 152
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 153 IRQAITRAIAQQARTIRLPIHITEKLNKI 181
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 97/155 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L + K L + R+P+L EWAKA
Sbjct: 22 TDIVRTYLREIGKVPLLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQ 81
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L ++L L G ++ K++ ANLRL+V VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 82 LDPQELNRLLAQGEIAKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKF 141
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G RF++YAYWW+RQ I +AI + +RTIRLP+
Sbjct: 142 DPSKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E AKA G+S LK +L +G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 158
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 159 WIRQGITRAIAEKSRTIRLPI 179
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N + + K+ S + D ++ +L + LLT ++E EL +IQDL+ LE + +L+
Sbjct: 236 NVVRKTTKRDPSTSRRQTDSMKTYLKDIGSVSLLTGEQEVELAMRIQDLVYLEGVREQLE 295
Query: 297 SQFGR-----EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
+ R E + +WA A ++ R+LK L +G ++ ++I ANLRLVV +AK+Y +
Sbjct: 296 EEAKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANK 355
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+S DL+QEG +GL++ EKF + G +F++YA+WW+RQ + ++I SRTIRLPV F
Sbjct: 356 SMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLF 415
Query: 412 NL 413
+
Sbjct: 416 EI 417
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E ++ L+ +E K L G EPTL +W+KA L+ +LK + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ +++ ANLRLVV VAK+Y R + + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 AKRQMVEANLRLVVSVAKKYLKRNVEILDLIQEGTIGLQRGVEKFDPSKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI + SRT+RLP+
Sbjct: 143 IRQAMTRAIAEKSRTMRLPI 162
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 98/154 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D + ++L LL+ ++E Q+Q ++ + K +L + REPTL EWA + L
Sbjct: 23 DAVSIYLHKIGRVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L +L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 83 KEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI Q SRTIRLP+
Sbjct: 143 PTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPI 176
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAI 312
D +R +L LL+ ++E L Q+Q+L+ LE+ + +L+ + G +P+ E A A
Sbjct: 45 GDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAA 104
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL L+ LH+G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEK
Sbjct: 105 GLRPEVLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 164
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F P G +F++YAYWW+RQ I +AI + SRTIRLP+
Sbjct: 165 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 200
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D ++ ++ LL +EE L +IQ LI+ E+ + +L+ Q R PT EWA AI
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
G++ +K ++ ++ L +NLRLV+ +AK+YQGRG+++ DL QEG++GL ++ EK
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEK 120
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F P+ G RF++YA WW++Q I +AI +RTIRLPV
Sbjct: 121 FDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPV 156
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 107/197 (54%), Gaps = 42/197 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
D +RL+L LL+ +EE L Q+Q +LI LE ++
Sbjct: 19 TDLVRLYLQDIGRVDLLSHEEELTLARQVQRRERLLRERRRLAATHPALQELIDLEDDQQ 78
Query: 294 KLQSQFGREPTLIE----------------------WAKAIGLSCRDLKSELHSGNSSRE 331
+L SQ G P + + WA+ LS +LK LH G +R+
Sbjct: 79 RLASQLGHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAELKQALHHGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEK+ P G RF++YAYWW+RQ
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKYDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPV 408
I +AI SRTIRLPV
Sbjct: 199 GITRAIATQSRTIRLPV 215
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 PETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N+ A +K LSE D + F LL A+EE +L Q+Q ++++E+ + +L+
Sbjct: 48 NNGGAKYQKNLSE-----DTVGAFFKEMARYPLLKAEEEVDLANQVQFILQIEEIEERLE 102
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+Q +P+ E A+++G++ + L L+ ++ K+I +NLRLVV +AK+Y RG++
Sbjct: 103 AQLNHKPSKAEIAESLGMNEKQLDHRLYQSRVAKRKMIRSNLRLVVSIAKRYLNRGVAFL 162
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEG++GL ++ EKF P G +F++YAYWW+RQ I + I SRTIRLP+
Sbjct: 163 DLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQAITRTIANDSRTIRLPI 214
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT-LIEWAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G E E A A GLS LK +L +G
Sbjct: 13 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 72
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 73 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 132
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 133 WIRQGITRAIAEKSRTIRLPI 153
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++K + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A EE EL +Q L+ E+++ +L + PT +WA+A+G S R ++ L+ G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL A EE EL +Q L+ E+++ +L + PT +WA+A+G S R ++ L+ G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 110/178 (61%), Gaps = 1/178 (0%)
Query: 240 KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299
K ++++ + G D +R +L LLT +EE Q+Q L+ L++++ L+
Sbjct: 3 KVNLQQAPNNGKSSADMVRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESL 62
Query: 300 GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
RE T EWA+A L+ + L+ +L G ++ K+I ANLRLVV +A+ + R + DL+
Sbjct: 63 DRERTREEWAEAAQLTPKQLQRDLQIGERAKRKMIEANLRLVVAIARNIKKRNLEFLDLI 122
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
QEGS+GL + VEKF P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 123 QEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 245 KKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPT 304
KK ++ D +R +L LLT ++E Q+Q ++ L K L Q REPT
Sbjct: 8 KKTTKPLFTADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPT 67
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
EWA + LS +L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++
Sbjct: 68 ASEWAAQVHLSEDELTRIITLGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTL 127
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
GL + VEKF P G +F++YAYWW+RQ I +AI Q +R IRLP+ +T L+ I
Sbjct: 128 GLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKI 180
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G + E AKA G+S LK +L +G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 158
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 159 WIRQGITRAIAEKSRTIRLPI 179
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 89/140 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL EE EL IQ+L+ EK KL + GR PT E A A G + L LH +
Sbjct: 84 LLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRT 143
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I++NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 144 AKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 203
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I RTIRLPV
Sbjct: 204 IRQGITRTIANQGRTIRLPV 223
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K L + REP + EWA +
Sbjct: 18 DMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +++ + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 101/159 (63%), Gaps = 2/159 (1%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G D D + FL LL EE EL +++ L+ L + K +L Q GR TL E A
Sbjct: 57 GLD--DAVGAFLKDMARYPLLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVA 114
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
A+ L+ + L+ ++ G ++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++
Sbjct: 115 AAMNLTEQQLQIRIYRGQVAKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRA 174
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EKF P+ G +F++YAYWW+RQ I +AI SRTIRLP+
Sbjct: 175 TEKFDPEKGFKFSTYAYWWIRQGITRAIANDSRTIRLPI 213
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE-WAKAIGLSCRDLKSELHSGN 327
LL+ +E L Q+Q+L+ LE +++L+ Q G + E AKA G+S LK +L +G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 84
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYW
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI + SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 101/140 (72%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E L Q+Q+LI +++ + KL+ + G +PT E A ++ LS +K ++ G
Sbjct: 27 LLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLDLSINQVKRKIIHGKR 86
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E+++++NLRLVV +AK+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW
Sbjct: 87 AKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVEKFDPTRGYKFSTYAYWW 146
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI + SRTIRLP+
Sbjct: 147 IRQGITRAISEQSRTIRLPI 166
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 98/147 (66%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW RKLLTA EE EL IQDL++LE +++L G +PT +WA A G + L+
Sbjct: 243 LWKLTGRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKTLR 302
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
L G S+ +++ +N+RLV+ +A++++G G+ L+DL+QEG GL++ EKF G R
Sbjct: 303 KRLAHGIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFR 362
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLP 407
F++Y++WW++Q +RK++ + ++ RLP
Sbjct: 363 FSTYSHWWIKQAMRKSVSEQTQIFRLP 389
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 99/155 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R FL LL+ +EE +++ L+ L + K L + EP+L WA A+
Sbjct: 20 TDTVRSFLVQIGRVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVE 79
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++ L+ L +G +R+K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 80 MTPTQLQETLDNGEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQEGTLGLQRGVEKF 139
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +A+ Q SR+IRLP+
Sbjct: 140 DPDKGYKFSTYAYWWIRQAITRALDQKSRSIRLPI 174
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LLT+D+E Q+Q +I +E +K +L Q REP L E A +
Sbjct: 7 DMVRVYLREIGQFPLLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKLAELADFVNK 66
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S ++ L G +++K++ ANLRLVV +AK+YQ R + L DL+QEG++GL + +EKF
Sbjct: 67 SETEVTQILQLGQRAKQKMVTANLRLVVSIAKKYQRRNLELLDLIQEGAIGLQRGIEKFD 126
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G + ++YAYWW+ Q I +AI + SR +RLP+
Sbjct: 127 PNRGYKLSTYAYWWISQAITRAIAEKSRAVRLPI 160
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 101/157 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +RL+L +LL A+EE EL +I DL+ LE+ + L EP +WA A+ +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ LH G +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 222
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 3/160 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKA 311
D +RL+L +LL ADEE EL +I DL+ LE ++ +L ++ P + EWA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G+ + + LHSG +++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ E
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 200
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
KF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 201 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 240
>gi|255628117|gb|ACU14403.1| unknown [Glycine max]
Length = 196
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 5/185 (2%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60
ME R + S P FP RT H ++ SSS+SVLM EQ++P VAS ++ A++FP
Sbjct: 1 MEFSRTMFCSSPPFPPRT---HHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFP 57
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVLLQEQRDEYRPLLHM KEDKTSQA +R ++T EE N+ + DQ+V D
Sbjct: 58 ASVLLQEQRDEYRPLLHMSKEDKTSQAMFSTRQMDT-VMVHEENNTENADQVVLDFRKHL 116
Query: 121 LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180
+WP L NL + GE S S T+Q +S+D + + + V+LA+KALS SK+ +S+
Sbjct: 117 HYWPHLQNLLASSQTGE-ISASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSV 175
Query: 181 AENPK 185
E+ K
Sbjct: 176 VEDLK 180
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 101/161 (62%), Gaps = 1/161 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT + L +I+ L + +L+ ++G+EP EWAKA+ +S +L L
Sbjct: 273 LLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQR 332
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+RE L+ ANLRLVV VAKQ+ RG+S+ DL+QEGS+GL+K E+F + G RF++YA WW
Sbjct: 333 ARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTYAMWW 392
Query: 389 VRQTIRKAIFQHSRTIRLPVMTFNLS-PIYIFKFYVFSSLN 428
+RQ +++AI SR IR+P +LS IY + + S+L
Sbjct: 393 IRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLG 433
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 112/206 (54%), Gaps = 43/206 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL--------------------IAQIQDLIRLEKEKS 293
ND LRL+L LLT++EE L IA I+ L+ LE+ +
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSELHSGNSSRE 331
+ + PT EWA+A GL ++L+ L G +R+
Sbjct: 79 REANHISHWPTRQEWARAAELPLSELNRLLNEGYTLWAKESGLDTKELQQRLREGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SRTIRLPV +T L+ I
Sbjct: 199 GITRAIATQSRTIRLPVHITEKLNRI 224
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL+A+EE L ++ L E+++ +L Q R P+ +E AKA+GL S R L + L+ G
Sbjct: 64 LLSAEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGR 123
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 124 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I SRTIRLP+
Sbjct: 184 WIRQAITRTIANDSRTIRLPI 204
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ ++E Q+Q ++ L+ + L+ R PT EWA+A
Sbjct: 16 GDMVRTYLHEIGRVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAAT 75
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+S +L L G +++K+I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 76 ISEAELDRVLRQGRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKF 135
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q R+IRLP+ +T L+ I
Sbjct: 136 DPSRGYKFSTYAYWWIRQAITRAIAQQGRSIRLPIHITEKLNKI 179
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L + +L ++ GREPTL EW++A
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAAR 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ L + + G ++ +++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEKF
Sbjct: 68 IDKTALSTAIAEGEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 104/163 (63%), Gaps = 9/163 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA +E EL AQ + + + +L + GR+PTL E A +G
Sbjct: 130 SDPVRMYLREIGKVDLLTAKQEIEL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMG 188
Query: 314 LSCRDLKSELHS--------GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
L + +K+ + G ++ LI ANLRLVV +AK+Y GRG++ DL+QEG++G
Sbjct: 189 LDKKVIKAVEKTSKDWNDKQGEAAERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIG 248
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
LM++VEKF + G +F++YA WW+RQ I +A+ SRTIR+PV
Sbjct: 249 LMRAVEKFDWRRGFKFSTYATWWIRQAITRALADQSRTIRIPV 291
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L +E ++ +L + G PT E A + LS ++L+ +LH G
Sbjct: 78 LLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRL 137
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 138 AKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWW 197
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 198 IRQAITRTIANDARTIRLPI 217
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ +EE + Q+Q + L + + L + G EPTL EWA A
Sbjct: 8 TDLVRTYLREIGKVPLLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASE 67
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L +L + + ++ +++ ANLRLVV VAK+Y R + L DL+QEGS+G+ + VEKF
Sbjct: 68 LEPLELNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKF 127
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 171
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 2/165 (1%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LLT ++E Q+Q L L+ + L +++G+EPT EWAKA
Sbjct: 8 TDLVRTYLREIGRVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASD 67
Query: 314 LS-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
L+ +L + +G ++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ + VEK
Sbjct: 68 LADSEELAKIIAAGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEK 127
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
F P G RF++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 128 FDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKI 172
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 113/168 (67%), Gaps = 3/168 (1%)
Query: 252 DRN--DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
D+N DP+R +L LLT +EE ++Q L+ LE K L+ + G+EPT EWA
Sbjct: 4 DKNFTDPVRAYLREIGRVPLLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWA 63
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
A L+ +L++ + +G++++ K++ ANLRLVV VAK+Y R + L DL+QEG++G+ +
Sbjct: 64 AAAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTLGMQRG 123
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
VEKF P G RF++YAYWW+RQ I +AI + SRTIRLP+ +T L+ I
Sbjct: 124 VEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKI 171
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 90/140 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL Q++ L +E K+ + R PT +E A A+ S D + L S
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 212
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 213 IRQGITRTIANDARTIRLPI 232
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE +L +++ L+ ++ + LQ + R+PT E A A+ ++ R L+ L+ G
Sbjct: 75 LLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRV 134
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 195 IRQAITRTIANDARTIRLPI 214
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC-RDLKSELHSGN 327
LLTA+EE +L ++ L E+ + KL + R P+ +E A A+GL R L + L+ G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I SRTIRLP+
Sbjct: 184 WIRQAITRTIANDSRTIRLPI 204
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E Q+Q ++ L + K L+ + EP+L EWA +
Sbjct: 18 DMVRTYLREIGRVPLLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQ 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L + G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SETELNHLMVQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q RTIRLP+ +T L+ I
Sbjct: 138 PMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKI 180
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT ++E Q++ ++ + + L G EP+ WA+ GL L++++ +G +
Sbjct: 22 LLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGLDVETLQAQVAAGEA 81
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I ANLRLVV +AK+Y R + L DL+QEGS+GL ++VEKF P G RF++YAYWW
Sbjct: 82 AKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQEGSIGLNRAVEKFDPAKGYRFSTYAYWW 141
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI + SRT+RLP+
Sbjct: 142 IRQAMTRAIAEKSRTVRLPI 161
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 93/154 (60%), Gaps = 23/154 (14%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL---------------------- 323
+ L +++L +Q G P+L WAKA G+ DLK L
Sbjct: 127 VHLLNTRARLTAQLGHRPSLERWAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQ 186
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 187 NEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFST 246
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 247 YAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 280
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 115/193 (59%), Gaps = 6/193 (3%)
Query: 219 RSKKRKVSKPQVTNHETYNSRKASVKKKLSE-GFDRNDPLRLFLWGPETRKLLTADEEFE 277
R+ K + +KP +N E +K + E GFD + ++ +LL +EE
Sbjct: 114 RAIKSRATKPGNSNGEPPKPVSRKIKASVRETGFD---SMHYYMKTMGNHELLQKNEEII 170
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLKSELHSGNSSREKLIN 335
L +IQ LI E ++ +L+++ R PT EWA +I ++ LK ++ ++ L
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLV+ +AK+YQ RG+++ DL QEG++GL ++ EKF P+ G RF++YA WW++Q I +
Sbjct: 231 SNLRLVISIAKRYQNRGLNMQDLCQEGTLGLTRACEKFDPEKGFRFSTYATWWIKQGIMR 290
Query: 396 AIFQHSRTIRLPV 408
AI +RTIRLPV
Sbjct: 291 AIADQARTIRLPV 303
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 87/140 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL +EE Q+Q + L+ K LQ REPT EWA +S L+ EL G+
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI + RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 130/235 (55%), Gaps = 48/235 (20%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ------------- 283
+R+AS K++ + D +RL+L LL+ +EE L +Q
Sbjct: 2 TNRQASSKRRST-----ADLVRLYLQDIGRVDLLSHEEELTLARLVQKREQLVVERRGLC 56
Query: 284 ----DLIRLEK-EKSKLQ--SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS------- 329
D+ RLE E+ +L+ S+ G +P+ +WA+A GLS +L++++ +GN +
Sbjct: 57 SKHPDVARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWAELLDM 116
Query: 330 ---------------REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL + VEK+
Sbjct: 117 SPGDLQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERGVEKYD 176
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSSLN 428
P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I + + S L
Sbjct: 177 PTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKAQRDIASRLG 231
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 99/154 (64%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT D+E +Q ++ +E+++S L Q R+PT +E A ++G
Sbjct: 7 DSVRSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQ 66
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L+S + G +++K++ ANLRLVV VAK+YQ + DLLQEG++GL + +EKF
Sbjct: 67 NEAELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIEKFD 126
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G + ++Y YWW+ Q+I +A+ SRTIRLP+
Sbjct: 127 PNKGYKLSTYVYWWITQSITRAVADKSRTIRLPI 160
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 97/147 (65%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW R+LLTA EE E IQDL++LE +++L G +PT +WA A G+ + L+
Sbjct: 230 LWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLR 289
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
L+ G + +++ +N+RLV+ +A++++G G+ +DL+QEG GL++ EKF G R
Sbjct: 290 KRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFR 349
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLP 407
F++Y++WW++Q +RK++ + S+ RLP
Sbjct: 350 FSTYSHWWIKQAMRKSVSEQSQIFRLP 376
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 97/147 (65%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
LW R+LLTA EE E IQDL++LE +++L G +PT +WA A G+ + L+
Sbjct: 230 LWKMTGRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLR 289
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
L+ G + +++ +N+RLV+ +A++++G G+ +DL+QEG GL++ EKF G R
Sbjct: 290 KRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFR 349
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLP 407
F++Y++WW++Q +RK++ + S+ RLP
Sbjct: 350 FSTYSHWWIKQAMRKSVSEQSQIFRLP 376
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ +GLS ++L S L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 138 WAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 197
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++V+KF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 198 RAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNKI 247
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
+PL ++ + KLL DEE L QIQ ++LE+ + +L++ G P+ EWA + L
Sbjct: 226 NPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLHL 285
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L EL + ++E +I+ANLRLVV +A+ Y+GRG++ DL+QEG+MGL+K+ EKF
Sbjct: 286 TKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFN 345
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN-LSPI--YIFKFYV 423
P+ G +F +YA WW++++I I SR IRLP LS I Y ++ V
Sbjct: 346 PEMGFQFYTYARWWIKKSILTGIANQSRVIRLPTQVHAFLSSIRKYTYELTV 397
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q L L++ K +LQ REPT EWA+ +S L+ EL G+
Sbjct: 23 LLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI + RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q L L++ K +LQ REPT EWA+ +S L+ EL G+
Sbjct: 23 LLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQLQKELKLGHK 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI + RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL Q++ L +E+ K+ L GR P L + A A LS ++ L G +
Sbjct: 94 LLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRA 153
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 154 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 213
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 214 IRQGITRTIANDARTIRLPI 233
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 108/208 (51%), Gaps = 45/208 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ---DLIRLEKEKS----------------- 293
D +RL+L +LL DEE ++Q L+RL KS
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMKLLRLRNNKSAISEDKVMERFVHLIEI 118
Query: 294 --KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+L SQ G P+L WA A G+ LK + +G +
Sbjct: 119 HDRLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQA 178
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 179 KEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 238
Query: 390 RQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RQ I +AI SRTIRLPV +T L+ I
Sbjct: 239 RQGITRAIATQSRTIRLPVHITEKLNKI 266
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 89/140 (63%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E Q+Q +I L++ K +L Q REP L EWA + L+ EL G +
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+ K++ +NLRLVV +AK+Y + DL+QEG++GL + VEKF P G RF++YAYWW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYAYWW 142
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI + RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL DEE +L ++ L E+++ L + GR P+ EWA + + + R+L S+L+ G
Sbjct: 74 LLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGR 133
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 134 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 193
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 194 WIRQAITRTIANDARTIRLPI 214
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 106/197 (53%), Gaps = 42/197 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQ--------------------IQDLIRLEKEKS 293
ND LRL+L LLT +EE L Q IQ L+ LE+ +
Sbjct: 7 NDLLRLYLQDIGRVDLLTNEEEVLLARQVQQREVLLAEERALAGEHPTIQRLLELEQLQQ 66
Query: 294 KLQSQFGREPTLIEWAKAIGLS----------------------CRDLKSELHSGNSSRE 331
+ + PT EWA+A GL+ ++L+ L G +R+
Sbjct: 67 REANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKELQKRLREGRRARD 126
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 127 RMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 186
Query: 392 TIRKAIFQHSRTIRLPV 408
I +AI SRTIRLPV
Sbjct: 187 GITRAIATQSRTIRLPV 203
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR---------------------LEKEK 292
D +RL+L +LL DEE ++Q +R L +
Sbjct: 60 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMRMLDLRAEFAKTSDTVIERYVHLIETH 119
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG----------------------NSSR 330
+L SQ G P+L WA G+ DLK L +G N ++
Sbjct: 120 DRLVSQLGHRPSLERWAATAGVEVSDLKPILAAGKQRWAELAGLSVKELEQIQSQGNRAK 179
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 180 EHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 239
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 240 QGITRAIATQSRTIRLPVHITEKLNKI 266
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 96/140 (68%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L ++ ++ L+ + G++P+ E A ++ + L+S L+ G
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 97/140 (69%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L +++ ++ L+ Q G +P+ ++ A + ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 211 IRQAITRAIANDARTIRLPI 230
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+WA+ +G+S ++L G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 173 QWAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 232
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 233 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 283
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 91/154 (59%), Gaps = 23/154 (14%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------- 328
+ L + +L S G P+L WA+ G+S DLK L SG
Sbjct: 139 VHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASLTVAELEEAI 198
Query: 329 -----SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 199 REGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFST 258
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 259 YAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 292
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + ++ LQ Q G+ PT + A + ++ + L++ L+ G
Sbjct: 92 LLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGRV 151
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 152 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 211
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 212 IRQAITRAIANDARTIRLPI 231
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 117/198 (59%), Gaps = 8/198 (4%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKAS-VKKKLSEGFDRNDPLRLF--LWGPETRKLL 270
R ER++++ + + + N+ AS +KK +G PL F + GP +LL
Sbjct: 174 RRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGC--QTPLGCFYKMTGP---RLL 228
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
TA++E E IQDL++LE + ++ G EPT +WA A G L+ L+ G +
Sbjct: 229 TAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNHGVYCK 288
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+++ +N+RLV+ +AK+++G G+ DL+QEG GL++ EKF G RF++Y++WW++
Sbjct: 289 NRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIK 348
Query: 391 QTIRKAIFQHSRTIRLPV 408
Q IRK++ + ++ IRLP
Sbjct: 349 QAIRKSVLEQTQIIRLPA 366
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 100/163 (61%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G D +R++L +LL DEE EL +I DL+ LE+ + + G P EW
Sbjct: 153 KGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEW 212
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A + + + L G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 213 AVLVDMPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 272
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 273 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 315
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ QFG T E A L+ + L++ L+ G
Sbjct: 98 LLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRV 157
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 158 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 217
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 218 IRQAITRAIANDARTIRLPI 237
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 104/164 (63%), Gaps = 5/164 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-----REPTLIEW 308
+D +R++L +LL ADEE EL +I DL+ LE+ + + + G E W
Sbjct: 88 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLW 147
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A+ + +S + + LH G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 148 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 207
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 208 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYE 251
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLTA EE+ L +++ +++ E L + GR P++ EWA A S R + + +
Sbjct: 3 ELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAAC--SPRLFREMMLTAK 60
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++++++ N+RLVV +A++Y G G+++ DL+QEGS+GL ++ EKF P+ G +F++YA W
Sbjct: 61 EAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYASW 120
Query: 388 WVRQTIRKAIFQHSRTIRLPVMTFNL 413
W++Q + ++I HSRTIRLPV NL
Sbjct: 121 WIQQAVFRSIAYHSRTIRLPVHVHNL 146
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 122/239 (51%), Gaps = 31/239 (12%)
Query: 201 GYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLF 260
G L E+++ P L++R +R ++ E R +++SE +RL
Sbjct: 33 GTSLNELEELVHPDGLQKRPGRRTTDLVRMYLQEIGRVRLLGRDEEVSEAQQVQRYMRLL 92
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
E R E IQ +++ + + L S G P+L WA+A G+ +LK
Sbjct: 93 ----ELRDEAAQAEG----GTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELK 144
Query: 321 SELHSGNS----------------------SREKLINANLRLVVHVAKQYQGRGISLHDL 358
L SG ++E +I ANLRLVV VAK+YQ RG+ L DL
Sbjct: 145 PILASGKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDL 204
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+QEG++GL ++VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 205 IQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 263
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 97/143 (67%), Gaps = 7/143 (4%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELHS 325
LL DEE EL Q++ ++ ++K LQ E + I EWAK IG+S R+L+ L
Sbjct: 20 LLKPDEEIELGKQVKRMMTCWEKKENLQV----EKSYITEEEWAKEIGISVRELQLILKR 75
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G ++EK+I ANLRLVV V+K+YQG+G+ DL+ EG++GL+++VEKF+ G +F++YA
Sbjct: 76 GKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLIRAVEKFEYDKGYKFSTYA 135
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
Y W+RQ + +AI RTIR+PV
Sbjct: 136 YHWIRQALVRAICDKGRTIRVPV 158
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 106/163 (65%), Gaps = 5/163 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG--REPTLIE---W 308
+D +R++L +LL ADEE EL +I DL+ LE+ + + + G +P + W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
A+ + +S + + LH G ++EK++ +NLRLVV +AK+Y RG+S DL+QEGS+GL++
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 206
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 207 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 249
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 95/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ + G++P+ E A ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 211 IRQAITRAIANDARTIRLPI 230
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ADEE EL +++ L + ++ L+ + G +P+ E A L+ R L++ L+ G
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 208
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 209 IRQAITRAIANDARTIRLPI 228
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 95/158 (60%), Gaps = 23/158 (14%)
Query: 282 IQDLIRLEKEKSKLQSQFGR------------------EPTLI----EWAKAIGLSCRDL 319
+Q IRL + +L SQ G +PTL+ WA+ GL+ DL
Sbjct: 114 LQLYIRLIEAHDRLASQLGHRPSLERWAAEAHIALSELKPTLVAGKRSWAEVAGLTVPDL 173
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG+MGL ++VEKF P G
Sbjct: 174 EQIQKEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVEKFDPTKGY 233
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 234 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 271
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 214 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 270
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 271 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP
Sbjct: 331 EGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 377
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 60 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRIVLANAAKQGDTVIVPYQRLIEVQ 119
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WAK G+ DLK L G ++
Sbjct: 120 ERLSSELGHRPSLERWAKTAGIDLADLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAK 179
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 180 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 239
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 240 QGITRAIATSSRTIRLPVHITEKLNKI 266
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 108/197 (54%), Gaps = 42/197 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ---DLIRLEKEKSKLQ-------------- 296
ND LRL+L LL+ +EE L Q+Q L+R E+E ++
Sbjct: 19 NDLLRLYLQDIGRVNLLSNEEEVLLARQVQRREQLLRQERELAEAHPVLRRLLELEELQQ 78
Query: 297 ---SQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ PT EWA+A G+S +L K++L G +R+
Sbjct: 79 REANHHCHWPTRQEWARAAGMSVAELQTILNEGYGTWSRLIELEPCTLKAQLRDGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 RMIAANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPV 408
I +AI SRTIRLPV
Sbjct: 199 GITRAIATQSRTIRLPV 215
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 171 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 227
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 228 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 287
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP
Sbjct: 288 EGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 334
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 87/124 (70%)
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
DL++LE+ + +L ++G EPT +WA A G++ R L+ L+ G ++K+I +N+RLV+
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403
+ K YQG G++L DL+QEG GL++ EKF G +F++YA+WW++Q +RK + SRT
Sbjct: 63 IXKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRT 122
Query: 404 IRLP 407
IRLP
Sbjct: 123 IRLP 126
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 99/169 (58%), Gaps = 26/169 (15%)
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK---------- 320
TAD+E IQ ++L + +L + G P+L WA G++ DLK
Sbjct: 98 TADKE---AGAIQQYVKLIEAHDRLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREW 154
Query: 321 --------SELHS----GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
EL + G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL +
Sbjct: 155 AKVAKLSVEELETIQMEGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 214
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 215 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 263
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 105/170 (61%), Gaps = 11/170 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF--GREP--------- 303
D ++++L + LL A+EE +L +IQDL+ LE +L ++ G +P
Sbjct: 378 DSMKVYLKEIGSVSLLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPIAQTHGDKV 437
Query: 304 TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 363
T WA+ +GL+ +L+ L G +++ +I ANLRLVV +AK+Y R +S DL+QEG
Sbjct: 438 TKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSFQDLIQEGC 497
Query: 364 MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
+GL++ EKF + G +F++YA+WW+RQ + ++I SRTIRLPV F +
Sbjct: 498 VGLIRGAEKFDFERGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 547
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 93/140 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + ++ LQ Q G PT + A + ++ + L++ L+ G
Sbjct: 80 LLKPDEEVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQLENRLYQGRV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 200 IRQAITRAIANDARTIRLPI 219
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 29/186 (15%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-------------- 300
D +R++L +LL ADEE EL QI DL+ LE+ ++++ +
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRARMGAAGTDMHSDVADLLGDDD 120
Query: 301 ---------------REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
E L WA+A G++ + + G +++K++ +NLRLVV +A
Sbjct: 121 LLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIA 180
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIR
Sbjct: 181 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 240
Query: 406 LPVMTF 411
LPV +
Sbjct: 241 LPVHLY 246
>gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17135717|dbj|BAB78263.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 316
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 99/155 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R++L LLT+D+E +Q +I L++++ +L + REPT +E A +
Sbjct: 6 SDLVRIYLQEIGQFPLLTSDQEITYARLVQQMIALQEQQHELTQKLEREPTTLELANFLN 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + +EKF
Sbjct: 66 KTEAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRGIEKF 125
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G + ++YAYWWV Q I +AI + SRT+RLP+
Sbjct: 126 DPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPI 160
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 92/140 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL Q++ E ++ +L + G PT + A+A+ + ++L +L+ G
Sbjct: 78 LLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKELDRKLYQGRV 137
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 138 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWW 197
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 198 IRQAITRTIANDARTIRLPI 217
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL ++E Q+Q ++ L K KL Q R+PT +E+A+ I L
Sbjct: 23 DLVRTYLHEIGRIPLLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKL 82
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L +L G ++E++I ANLRLVV +AK+YQ R + DL+QEGS+GL + VEKF
Sbjct: 83 SESELLQQLQQGYQAKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQEGSLGLERGVEKFD 142
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI + RTIRLP+ +T L+ I
Sbjct: 143 PTRGYKFSTYAYWWIRQAITRAIAEQGRTIRLPIHLTEKLNKI 185
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 1/176 (0%)
Query: 239 RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
R + +K ++ + D ++ +L T LLT EE EL +IQDL+ L +L+ +
Sbjct: 254 RNRRIARKNADTKKQTDSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEE 313
Query: 299 -FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
G+EPT WA ++ ++L+ L G ++ +I ANLRLVV +AK+Y + +S D
Sbjct: 314 NGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQD 373
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNL 413
L+QEG +GL++ EKF + G +F++YA+WW+RQ + ++I SRTIRLPV F +
Sbjct: 374 LIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 429
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 100/168 (59%), Gaps = 26/168 (15%)
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN---- 327
A E E++A +L+++++ +L S+ G P+L WA G+ DLK L +G
Sbjct: 127 AKEGDEIVAPFLNLVQVQE---RLTSELGHRPSLERWANTAGIELVDLKPTLANGKRRWA 183
Query: 328 ------------------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++
Sbjct: 184 EIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERA 243
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 244 VEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKI 291
>gi|357510737|ref|XP_003625657.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500672|gb|AES81875.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 365
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+++ GN S++KLI+ANLRLVVH+AK YQG L+ EGSMGLM+SVEKFKPQAGC
Sbjct: 117 QNDFIGGNRSKDKLIHANLRLVVHIAKYYQGAWSQPXGLI-EGSMGLMRSVEKFKPQAGC 175
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLP 407
RF++YAYWW+RQTIR+A+F HS+TIRLP
Sbjct: 176 RFSTYAYWWIRQTIRRALFLHSKTIRLP 203
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 104/167 (62%), Gaps = 3/167 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
+S +KK +G PL F + R+LLTA +E E IQDL++LE + +L G
Sbjct: 17 SSARKKRLKGC--RSPLGCF-YKMTGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNG 73
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA+A G L+ L+ G S + ++ +N+RLV+ +A++++G G+ DL+Q
Sbjct: 74 GEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 133
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP
Sbjct: 134 EGIQGLVRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 180
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 95/160 (59%), Gaps = 23/160 (14%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------ 327
A I+ +RL + + +L S+ G P+L WA G+ DLK L +G
Sbjct: 106 AVIEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLSDLKPTLANGKRRWAEIAKLTVE 165
Query: 328 ----------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 166 ELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTK 225
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 226 GYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 93/157 (59%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D ++L+ + L +EE L QI L+ LEK KL+ + R P IEWA +
Sbjct: 187 DSIQLYYKQVNSFARLHPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKM 246
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L L G ++ +++ ANLRLV VAK+YQ RG+ DL+QEG +GL+++ EKF
Sbjct: 247 SKWELCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFD 306
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
G +F++Y WW+RQ I +AI +SR +RLPV +
Sbjct: 307 HTKGYKFSTYGIWWIRQAITRAICDYSRIVRLPVYLY 343
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 106/197 (53%), Gaps = 42/197 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 110 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLQQQRDLATSDAAIGELYRLEELQR 169
Query: 294 KLQSQFGREPTLIEWAKAIGLS----------------------CRDLKSELHSGNSSRE 331
+ +Q PT EWA+A LS R+LK+ L +G +++
Sbjct: 170 REANQHSHWPTKQEWARAAHLSLAELQQRIEAGYGAWAREANLEARELKTALRNGRRAKD 229
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 230 HMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 289
Query: 392 TIRKAIFQHSRTIRLPV 408
+ +AI SRTIRLPV
Sbjct: 290 GMTRAIATQSRTIRLPV 306
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 94/139 (67%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE EL +IQ + +++ + + + Q+G++P+ E A A+ + L+S + G ++ KL
Sbjct: 69 EEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKL 128
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
INANLRLVV VAK+Y RG+ DL+QEG+MGL+++ EKF + G RF++YA+WW+RQ I
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGI 188
Query: 394 RKAIFQHSRTIRLPVMTFN 412
+ I +RTIRLPV +
Sbjct: 189 TRCIANQARTIRLPVHMVD 207
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 91/154 (59%), Gaps = 23/154 (14%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------ 327
+RL + + +L S+ G P+L WA G+ DLK L G
Sbjct: 112 LRLIEVQERLASELGHRPSLERWAATAGVQLSDLKPTLSEGKRRWAEIAKITVEELEQIQ 171
Query: 328 ----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
S+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 172 SQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFST 231
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 232 YAYWWIRQGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 111/207 (53%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE ++Q IRL + ++K
Sbjct: 56 TDLVRLYLQEIGRVHLLGRDEEVSEAQKVQRYIRLVELRAKAAKNGDEIMVPYEQLMAVQ 115
Query: 295 --LQSQFGREPTL--------IE--------------WAKAIGLSCRDLKSELHSGNSSR 330
L S+ G P+L IE WA+ GL+ ++L+ GN ++
Sbjct: 116 ERLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQSEGNRAK 175
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P G RF++YAYWW+R
Sbjct: 176 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTYAYWWIR 235
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 236 QGITRAIATQSRTIRLPVHITEKLNKI 262
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L LL+ DEE L ++Q L+ L ++S+L++ GREP+ EWA A G +
Sbjct: 6 RVYLPERAAEPLLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANY 65
Query: 318 D-LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
L++ + + RE+LI NLRLV+ VAK+Y G++ DL QEG+ GL K+ ++F P
Sbjct: 66 GALRTRMGHMKACREELIQRNLRLVLSVAKRYGDCGLAFTDLCQEGNFGLAKACDRFDPS 125
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G RF++YA WW+RQ + A+ SRTIRLP
Sbjct: 126 KGFRFSTYAVWWIRQAVAHAVAHQSRTIRLPT 157
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Query: 234 ETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
+T +S KA KK EG D L +L LTA+EE L +I+ L++E+
Sbjct: 235 KTESSSKADKAKK-PEGV--QDYLSTYLRDITKIDRLTAEEEIMLSKKIRTGYILKEERK 291
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
K + G T +WA + ++ DL ++LH +R++++ ANLRLVV V KQY G+
Sbjct: 292 KFERALGHPITKDQWAGHMHMAVGDLDAQLHEAELARDRMVMANLRLVVSVVKQYNCEGL 351
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFN 412
+ DL+QEGS+GL+K VEKF G + ++Y +WW+RQ + +AI HSRT+RLPV +
Sbjct: 352 EVPDLIQEGSIGLLKGVEKFDHTRGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVHD 410
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 5/162 (3%)
Query: 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKA 311
DR++ L + LL++DEE L ++Q L E ++ L + GREPT +EW A
Sbjct: 131 DRDEGLHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTELEWGAA 190
Query: 312 IGLS---CRDLKSELHSGNSSREK--LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+S C + E + K +INANLRLVV ++K+YQ RG+ D++QEG+ GL
Sbjct: 191 ARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQEGTFGL 250
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
++VEKF P+ G +F++YA WW++Q + +AI SRTIRLPV
Sbjct: 251 TRAVEKFDPEKGFKFSTYATWWIKQAVMRAIADQSRTIRLPV 292
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL +EE L QI+ LI++E++ +L+ + R PT E A+ L S L + L+ G
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAVGLNRATEKFDPNKGYKFSTYAYW 174
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 175 WIRQAITRTIANDARTIRLPI 195
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 102/154 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 95 STSVIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 155 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 188
>gi|428213655|ref|YP_007086799.1| sigma-70 family RNA polymerase sigma factor [Oscillatoria acuminata
PCC 6304]
gi|428002036|gb|AFY82879.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoria
acuminata PCC 6304]
Length = 619
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 90/140 (64%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL ++E L Q+Q I+LE+ K L S+ REPT EWA A GLS L+ + G
Sbjct: 198 LLKREDEISLAQQVQRWIQLEQGKQSLNSKLHREPTRSEWANATGLSLSQLEDAISKGRK 257
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++ L+ +NLRLVV +AK YQ RG+ L DL+Q G+ GL+K+ EKF P G +F++YA W
Sbjct: 258 AQKSLVYSNLRLVVSIAKIYQHRGLELLDLIQHGNEGLIKATEKFDPIKGYKFSTYATHW 317
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + + SR IRLPV
Sbjct: 318 IRQHITRGLCNESRIIRLPV 337
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q +++L ++K +L+ + GRE T EW + G+
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGI 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 SQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +R IRLP+ +T L+ I
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKI 180
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 91/140 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ Q + G P AK +G+ + L+ L+ G
Sbjct: 80 LLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKEMGIVQKQLEHRLYQGKV 139
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 200 IRQAITRAIANDARTIRLPI 219
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 3/168 (1%)
Query: 241 ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
S +KK +G +PL F + R+LLTA +E EL IQD ++LE + ++ G
Sbjct: 211 GSSRKKRVKGC--RNPLGCF-YKMSARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNG 267
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
EPT +WA A G L+ L G + ++ +N+RLV+ +AK+++G G DL+Q
Sbjct: 268 GEPTFTQWAAAAGTDENTLRKRLSYGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQ 327
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EG GL++ EKF G RF++Y++WW++Q IRK++ + ++ IRLP
Sbjct: 328 EGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLPT 375
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 115/216 (53%), Gaps = 43/216 (19%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
DP+RL+L +LLT +EE L +Q +L RLE+ +
Sbjct: 19 TDPVRLYLQDIGRVELLTNEEEVTLARLVQRREALLKQERKLASNQEAIKELQRLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ + PT EWA A GL+ +L K L +G +++
Sbjct: 79 REANHSCHWPTKQEWAMAAGLTLAELQEKIETGYKTWGALTGLDPLELKRSLRAGRRAKD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RGI L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 QMIQANLRLVVAVAKKYQQRGIELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSS 426
I +AI SRTIRLP+ +T L+ I + + SS
Sbjct: 199 GITRAIATQSRTIRLPMHITEKLNRIKRVQQEIASS 234
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 93/140 (66%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL A+EE EL QI+ L+ ++ + +L + GR P E A A GLS +L + G
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K+I++NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 152
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I RT+RLPV
Sbjct: 153 IRQGITRTIANQGRTVRLPV 172
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 101/154 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ + +E+ + +L G +P++ E + + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 84 STSIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 144 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 177
>gi|260436706|ref|ZP_05790676.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260414580|gb|EEX07876.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 377
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 105/197 (53%), Gaps = 42/197 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 20 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLLQQRELAESDAAIGELHRLEELQR 79
Query: 294 KLQSQFGREPTLIEWAKAIGL----------------------SCRDLKSELHSGNSSRE 331
+ +Q PT EWA+A GL +D+K L +G +++
Sbjct: 80 REANQHSHWPTKQEWARAAGLPLPDLQQRIELGYQAWAEQAQLEAKDVKLALRNGRRAKD 139
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ + DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 140 HMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 199
Query: 392 TIRKAIFQHSRTIRLPV 408
I +AI SRTIRLPV
Sbjct: 200 GITRAIATQSRTIRLPV 216
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ L+ + G +PT A + ++ + L++ L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQLENRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 211 IRQAITRAIANDARTIRLPI 230
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ + L+ + G++PT + A ++ + L++ L+ G
Sbjct: 90 LLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRV 149
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 150 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 209
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 210 IRQAITRAIANDARTIRLPI 229
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 98/142 (69%), Gaps = 3/142 (2%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LL A++E EL +I+ +LEK K ++ + G EPT EWA+A LS +L+ + G
Sbjct: 126 LLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDAEELRHMVRVGT 185
Query: 328 SSREKLINANLRLVVHVAKQY-QGRG-ISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+R++L+ ANLR VV VAK+Y + RG +S+ DL+QEG++GL+++VEKF P+ G RF +YA
Sbjct: 186 LARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVEKFDPRMGYRFTTYA 245
Query: 386 YWWVRQTIRKAIFQHSRTIRLP 407
WW+RQ I ++I SR IRLP
Sbjct: 246 TWWIRQAITRSIQNSSREIRLP 267
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 23/158 (14%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL------------------ 323
I+ I L + + +L S+ G P+L WA + G+S +LK L
Sbjct: 108 IKTYITLIEAQERLTSELGHRPSLERWAASAGISVMELKPALAVGKRRWAEIAKITVEEL 167
Query: 324 ----HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 168 EQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 227
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 228 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 265
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 106/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRTVLAGAAKQGDAVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G+ DLK L G ++
Sbjct: 119 ERLASELGHRPSLERWANTAGVQVSDLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 23/160 (14%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK +S +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 185 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 244
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
G RF++YAYWW+RQ + +AI SR IRLPV +T L+ I
Sbjct: 245 GYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKI 284
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 95/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L + + ++ L+ + G+ T ++ A + ++ + L+S L+ G
Sbjct: 91 LLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRV 150
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 211 IRQAITRAIANDARTIRLPI 230
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 92/154 (59%), Gaps = 23/154 (14%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------ 327
+RL + + +L S+ G P+L WA G+ DLK L +G
Sbjct: 108 LRLIEVQERLSSELGHRPSLERWATTAGIELPDLKPTLANGKRRWAETAKLTVEELDQVQ 167
Query: 328 ----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 168 SQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFST 227
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 228 YAYWWIRQGITRAIATSSRTIRLPVHITEKLNKI 261
>gi|1769598|gb|AAB39998.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ +GLS ++L S L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 138 WAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 197
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++V+KF P G RF++YAYWW+RQ I + SRTIRLPV +T L+ I
Sbjct: 198 RAVDKFDPTKGYRFSTYAYWWIRQGITRGDRTQSRTIRLPVHVTEKLNKI 247
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E Q+Q ++ L K+ L + REPT EW +
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKH 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L + G ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 DEATLNKIVSQGTWAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +R IRLP+ +T L+ I
Sbjct: 138 PTKGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKI 180
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 110/207 (53%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEE----------FELIAQ-----------IQDLIRLEKEK 292
D +RL+L +LL DEE +L+A ++D + L++ +
Sbjct: 41 TDLIRLYLQDIGRVRLLGRDEEVSEARWVQRYMQLLAVRNCVAVEEGGVLKDYVDLQEGR 100
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELH----------------------SGNSSR 330
+L +Q G P+ WAK + S +L+ L G ++
Sbjct: 101 DRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEELKQVCKEGQRAK 160
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 161 DHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 220
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 221 QGITRAIATQSRTIRLPVHVTEKLTRI 247
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT EE L +++ + L +E+ KL ++ G P+ EWA + LS DL +L
Sbjct: 369 LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEW 428
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+R+K++ ANLRLVV VAKQY G+ + DL+QEGS+GL++ VEKF G + ++Y +WW
Sbjct: 429 ARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWW 488
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI HSRT+RLPV
Sbjct: 489 IRQGVTRAIADHSRTVRLPV 508
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 113/182 (62%), Gaps = 5/182 (2%)
Query: 232 NHETYNSRKASVKKKLS-----EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+H T+ S + ++ KL+ + + D +R +L LL+ ++E L Q+Q+ +
Sbjct: 7 HHLTFMSSETIIENKLASIATLKSSNDVDLVRSYLRDIGRVPLLSHEQEITLGRQVQEYM 66
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346
+E+ + + G +P++ E + + LS +K L +G ++E+++ ANLRLVV VAK
Sbjct: 67 EVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRAGQRAKERMVAANLRLVVSVAK 126
Query: 347 QYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRL 406
+Y R + L DL+QEG++GL++ VEKF P G +F++YAYWW+RQ I +AI + SR IRL
Sbjct: 127 KYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRL 186
Query: 407 PV 408
P+
Sbjct: 187 PI 188
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 77/103 (74%)
Query: 306 IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
+ WAK GL+ ++L+ G +R ++I+ NLRLVV +AK+YQ RG+ L DL+QEG++G
Sbjct: 148 LRWAKLTGLNVKELEQIQTEGIEARHQMISTNLRLVVSIAKKYQNRGVELLDLIQEGTLG 207
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L ++VEKF PQ G RF++YAYWW+RQ I +AI SRTIRLP+
Sbjct: 208 LERAVEKFDPQRGYRFSTYAYWWIRQGITRAIATQSRTIRLPI 250
>gi|124024644|ref|YP_001018951.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
gi|123964930|gb|ABM79686.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9303]
Length = 376
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 111/206 (53%), Gaps = 43/206 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKS 293
DP+RL+L +LLT +EE L +Q +L RLE+ +
Sbjct: 19 TDPVRLYLQDIGRVELLTHEEEVTLARLVQRREALLKQERQLASSQEAIKELQRLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDL----------------------KSELHSGNSSRE 331
+ + PT EWA A GL+ +L K L +G +++
Sbjct: 79 REANHSCHWPTKQEWAMAAGLTLAELQDKIETGYKTWGALTGLDPLELKRSLRAGRRAKD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RGI L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 QMIQANLRLVVAVAKKYQQRGIELLDLVQEGTLGLERAVEKFDPARGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SRTIRLP+ +T L+ I
Sbjct: 199 GITRAIATQSRTIRLPMHITEKLNRI 224
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 105/207 (50%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L +LL DEE ++Q +RL ++K
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMRLLDLRAKFATPEEPVIEHFVHLIETH 118
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
L SQ G P+L WA G+ LK L G ++
Sbjct: 119 DRLASQLGHRPSLERWATTAGVDVATLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 239 QGITRAIATQSRTIRLPVHITEKLNKI 265
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 105/198 (53%), Gaps = 43/198 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEE----------FELIAQ-----------IQDLIRLEKEK 292
D +RL+L +LL DEE +L+A ++D + L++ +
Sbjct: 41 TDLIRLYLQDIGRVRLLGRDEEVSEARWVQRYMQLLAVRNCVAVEEGGVLKDYVDLQEGR 100
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELH----------------------SGNSSR 330
+L +Q G P+ WAK + S +L+ L G ++
Sbjct: 101 DRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEELKQVCKEGQRAK 160
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 161 DHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 220
Query: 391 QTIRKAIFQHSRTIRLPV 408
Q I +AI SRTIRLPV
Sbjct: 221 QGITRAIATQSRTIRLPV 238
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 92/140 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ ++ L+ Q G + E A L+ + L+S L+ G
Sbjct: 101 LLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRV 160
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 161 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 220
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 221 IRQAITRAIANDARTIRLPI 240
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 23/159 (14%)
Query: 281 QIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------- 327
++Q +RL + +L S G P+L WA G DLK L +G
Sbjct: 109 ELQRYVRLVDTRDRLASLLGHRPSLERWAAEAGEQVSDLKPILAAGKRQWAALASLTVEE 168
Query: 328 ---------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P G
Sbjct: 169 LERTQAEGIGAKEHMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKG 228
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 229 YRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 267
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL-SCRDLKSELHSGN 327
LL+A EE EL QI+ L+ E + +L Q R P+L EW +A+ R + L+
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVRQFEIWLYQLR 130
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYW
Sbjct: 131 AAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGYKFSTYAYW 190
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I + I +RTIRLP+
Sbjct: 191 WIRQAITRTIANDARTIRLPI 211
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRVVLANAAKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 96/172 (55%), Gaps = 24/172 (13%)
Query: 269 LLTADEEF-ELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
LL EEF E I + RL + +L + G P+ WAK + DLK L G
Sbjct: 101 LLETREEFLESHPVIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGK 160
Query: 328 SS----------------------REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365
++ +E +I ANLRLVV VAK+YQ RG+ L DL+QEG++G
Sbjct: 161 TAWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLG 220
Query: 366 LMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
L ++VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 221 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 272
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 85 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRVVLANAAKQGDEIIAPYLRIIEAQ 144
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSEL----------------------HSGNSSR 330
+L S+ G P++ WA G+ +LK L SG S+
Sbjct: 145 ERLASELGHRPSMERWASTAGVDVFELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSK 204
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 205 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 264
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 265 QGITRAIATSSRTIRLPVHITEKLNKI 291
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 102/154 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 95 SIPIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 155 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 188
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRIVLANAVKQGDEVATPYLHLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G++ DLK L G S+
Sbjct: 119 ERLASELGHRPSLERWAATAGINLCDLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 92/140 (65%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLTA +E E IQDL++LE + +L G EPT +WA+A G L+ L+ G
Sbjct: 238 RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGI 297
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
S + ++ +N+RLV+ +A++++G G+ DL+QEG GL++ EKF G RF++Y++W
Sbjct: 298 SCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHW 357
Query: 388 WVRQTIRKAIFQHSRTIRLP 407
W++Q IRK++ + ++ IRLP
Sbjct: 358 WIKQAIRKSVLEQTQIIRLP 377
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 101/154 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ + +E+ + ++ G +P++ E + + L
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNL 94
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 95 TTSTIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 155 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 188
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 75/101 (74%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + LS DL+ L G +R+++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 137 WAACLDLSLSDLQQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQEGTLGLE 196
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
++VEK+ P G RF++YAYWW+RQ + +AI SRTIRLPV
Sbjct: 197 RAVEKYDPTRGFRFSTYAYWWIRQGVTRAIATQSRTIRLPV 237
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 101/154 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ +P++ E A + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 84 SSSQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 144 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 177
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 99/155 (63%), Gaps = 4/155 (2%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSG 326
+LL+A+EE EL QI+DL++LE K +L ++ GREP EWA A G +S + G
Sbjct: 116 ELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAGTQPGPAFQSRILKG 175
Query: 327 NSSREKLINANLRLVVHVAKQYQGR-GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
+R +L+ +NLR VV +AK+Y + + L DL+QEGS+GLMK+ E+F G +F +YA
Sbjct: 176 RRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAERFDLDKGFKFLTYA 235
Query: 386 YWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFK 420
WW+RQ I +++ RTIRLPV + +Y+ K
Sbjct: 236 TWWIRQAIFRSLQDQGRTIRLPVHVHD--SLYLIK 268
>gi|78214100|ref|YP_382879.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78198559|gb|ABB36324.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 377
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 104/197 (52%), Gaps = 42/197 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELI--------------------AQIQDLIRLEKEKS 293
D LRL+L LLT +EE L A I +L RLE+ +
Sbjct: 20 TDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLSQQQKLAESDAAIGELHRLEELQR 79
Query: 294 KLQSQFGREPTLIEWAKAIGL----------------------SCRDLKSELHSGNSSRE 331
+ +Q PT EWA+A L +DLK L +G +++
Sbjct: 80 REANQHSHWPTKQEWARAADLPLPELQQRIDRGYQAWAEQAQLEAKDLKLALRNGRRAKD 139
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ + DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 140 HMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 199
Query: 392 TIRKAIFQHSRTIRLPV 408
I +AI SRTIRLPV
Sbjct: 200 GITRAIATQSRTIRLPV 216
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 106/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +RL + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLRIVLANAAKQGDEVIVPYQRLIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P+L WA G+ +LK L G ++
Sbjct: 119 ERLSSELGHRPSLERWATTAGIELSNLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 75/101 (74%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA LS +LK LH G +R+++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 115 WATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLE 174
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
++VEK+ P G RF++YAYWW+RQ I +AI SRTIRLPV
Sbjct: 175 RAVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPV 215
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + L +++++ L +G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 136 WAACVDLDIKEIEAVLKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 195
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++V+KF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 196 RAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNKI 245
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 101/154 (65%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL+ ++E L Q+Q+ +++E+ + ++ +P+ E A+ + L
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNL 83
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
S +K L +G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEKF
Sbjct: 84 STSQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SR IRLP+
Sbjct: 144 PARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 177
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q +R+ + +
Sbjct: 59 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRMRIVLSNAAKQGDEILIPYLRVIEVQ 118
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P++ WA A G+ +LK L G S+
Sbjct: 119 ERLASELGHRPSIERWASAAGVEVLELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSK 178
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 238
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 239 QGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 107/206 (51%), Gaps = 43/206 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ----------------- 296
D +RL+L +LL DEE ++Q +RL + + ++Q
Sbjct: 99 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYMRLVELRDQVQADHQPIQQYVHLIDIHD 158
Query: 297 ---SQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
+Q G P L WA+ G+ LK+ L G ++E
Sbjct: 159 RLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAIGMMVGELDQIQKEGVRAKE 218
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 219 HMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQ 278
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SRTIRLPV +T L+ I
Sbjct: 279 GITRAIATQSRTIRLPVHITEKLNKI 304
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 94/140 (67%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ L ++ + L ++ G+ + ++ A + ++ + L+S L+ G
Sbjct: 79 LLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRV 138
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 108/207 (52%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR---------------------LEKEK 292
D +RL+L +LL DEE ++Q +R L + +
Sbjct: 54 TDLVRLYLQEIGRVRLLGRDEEVAEAQKVQRYLRMRLMLSAAAAEGDAVIIPYSRLMEVQ 113
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L+++ G P+L WA G+S DLK L +G ++
Sbjct: 114 ERLKAELGHRPSLERWATTAGISLPDLKPTLANGKRRWAEIANLTVEELEQVQTQGLQAK 173
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 174 SHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 233
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 234 QGITRAIATSSRTIRLPVHITEKLNKI 260
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 23/158 (14%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS------------ 329
I + RL + +L + G P+ WAK + DLK L G ++
Sbjct: 115 IAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKTAWAEKAELSNAEL 174
Query: 330 ----------REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 175 DQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 234
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 235 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 272
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 87/140 (62%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL EE EL Q++ ++ +E K R PT E A A G + L+ +L +
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ ++I +NLRLVV +AK+Y RG+ DL+QEG++GL ++ EKF P G +F++YAYWW
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 288
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I + I +RTIRLP+
Sbjct: 289 IRQGITRTIANDARTIRLPI 308
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 87/148 (58%), Gaps = 23/148 (15%)
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+ +L S+ G P+L WA G+ DLK L G +
Sbjct: 131 QERLVSELGHRPSLERWASTAGIKLMDLKPTLSEGKRRWGEIAQLTVEELDEIQSQGIQA 190
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 191 KEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 250
Query: 390 RQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RQ I +AI SRTIRLPV +T L+ I
Sbjct: 251 RQGITRAIATSSRTIRLPVHITEKLNKI 278
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 92/135 (68%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
EE EL +IQ + +++ + + + Q G +P+ A+A+ +S L+S + G ++ KL
Sbjct: 69 EEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLRSRIRQGEQAQRKL 128
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393
INANLRLVV VAK+Y RG+ DL+QEG++GL+++ EKF + G RF++YA+WW+RQ I
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFRFSTYAHWWIRQGI 188
Query: 394 RKAIFQHSRTIRLPV 408
+ I +RTIRLPV
Sbjct: 189 TRCIANQARTIRLPV 203
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 49/231 (21%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDR---NDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+ ET +RK S ++ + D +R++L +LL A+EE EL +I DL+
Sbjct: 32 IAETETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLL 91
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAI-----------GLSCRD----------------- 318
+LE+ + L + +EPT +W K I S +D
Sbjct: 92 QLERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADI 151
Query: 319 ------------------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
K L+ G +++K++++NLRLVV +AK+Y RG+S DL+Q
Sbjct: 152 ISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 211
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
EGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 212 EGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 262
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 93/143 (65%), Gaps = 6/143 (4%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELHS 325
LLT ++E Q+Q + L K +L+ PT I +WA+A+ L+ +L+ L
Sbjct: 29 LLTHEQEVLYGKQVQQMKMLLARKVELEE---INPTSISQADWAQAVELTESELEQALVQ 85
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G ++ K+I ANLRLVV VAKQY R + L DL+QEGS+GL + V+KF P G RF++YA
Sbjct: 86 GQRAKNKMIQANLRLVVSVAKQYLRRNMELLDLIQEGSLGLERGVDKFDPSKGYRFSTYA 145
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
YWW+RQ + +AI Q SRTIRLPV
Sbjct: 146 YWWIRQAMTRAIAQQSRTIRLPV 168
>gi|148242803|ref|YP_001227960.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851113|emb|CAK28607.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 309
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 18/155 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ TL+E +
Sbjct: 17 NDPVSWYLSSIGRVPLLTPAEEIELGNQVQTMM-----------------TLVEQGEEAT 59
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R+ K + G S+E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 60 YTARE-KKLIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 118
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 119 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 153
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 106/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---------------------KEK 292
D +RL+L +LL DEE ++Q ++L + +
Sbjct: 62 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRILLSEAASKGDELLAHYLKIIEAQ 121
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
+L S+ G P++ WA G+ +LK L G ++
Sbjct: 122 ERLTSELGHRPSMKRWANTAGIEESELKGALSQGKRRWAETAKLTVQELEQIQTQGLQAK 181
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 182 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 241
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 242 QGITRAIATSSRTIRLPVHITEKLNKI 268
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 106/206 (51%), Gaps = 43/206 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE + Q+Q +RL + +++
Sbjct: 48 TDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHD 107
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSRE 331
L Q G P+ WAK +G + LK L SG +++
Sbjct: 108 QLLVQLGHRPSYERWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKA 167
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y+YWW+RQ
Sbjct: 168 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQ 227
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SR IRLPV +T L+ I
Sbjct: 228 GITRAIATQSRMIRLPVHITEKLNKI 253
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 7/170 (4%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL----EKEKSKLQSQFGREPTL--IE 307
D +R +L LL+ ++E L Q+Q ++ L E+ +KL G E + +
Sbjct: 73 TDAVRSYLHEIGRVPLLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNAD 132
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA A + +L + G S+ K+I ANLRLVV VAK+YQ R + DL+QEG++GL
Sbjct: 133 WAAAASIPESELDHHMRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLE 192
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+ VEKF P G +F++YAYWW+RQ I +AI Q +RTIRLP+ +T L+ I
Sbjct: 193 RGVEKFDPMKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKI 242
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 2/156 (1%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D +R ++ +LL +EE L ++Q LI+ E + +L+++ R PT EWA I
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
+ DLK ++ ++ L +N+RLVV +AK+YQ RG+S DL QEG +GL ++ EK
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F P+ G RF++YA WW++Q+I +AI RTIRLPV
Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPV 156
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 87/148 (58%), Gaps = 23/148 (15%)
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SS 329
+ +L S+ G P+L WA G+ DLK L G +
Sbjct: 134 QERLVSELGHRPSLERWASTAGIKLVDLKPTLSEGKRRWAEIAKLTVEELDQIQSQGIQA 193
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 194 KEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 253
Query: 390 RQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RQ I +AI SRTIRLPV +T L+ I
Sbjct: 254 RQGITRAIATSSRTIRLPVHITEKLNKI 281
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 23/160 (14%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK ++ +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARSAHRPSLERWAKTAQITVSELKNALKAGKQRWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 185 ELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 244
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
G RF++YAYWW+RQ + +AI SR IRLPV +T L+ I
Sbjct: 245 GYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHITEKLNKI 284
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 106/206 (51%), Gaps = 43/206 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL DEE + Q+Q +RL + +++
Sbjct: 29 TDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHD 88
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSRE 331
L Q G P+ WAK +G + LK L SG +++
Sbjct: 89 QLLVQLGHRPSYERWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKA 148
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y+YWW+RQ
Sbjct: 149 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQ 208
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SR IRLPV +T L+ I
Sbjct: 209 GITRAIATQSRMIRLPVHITEKLNKI 234
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N+ +A+ KK R D L +L L+ EE + +I L RLE + L+
Sbjct: 323 NNNEANGKKGKGINSRRVDSLNTYLSEIGQVNRLSLVEEKVICEEIARLTRLEAVREDLR 382
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ GR P EWA LS +L+ +L G ++ +++ ANLRLV+ AK+Y+ RG++
Sbjct: 383 RKMGRLPRENEWAWEANLSVSELRGKLIKGRRAKNRMVAANLRLVICFAKRYRNRGVAFQ 442
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEGS+GL++ VEK+ G RF++YA WW+RQ I KA+ + SR RLPV
Sbjct: 443 DLVQEGSIGLIRGVEKYDAHRGFRFSTYASWWIRQGIHKALLECSRMFRLPV 494
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 23/158 (14%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL----------------------SCRDL 319
+Q+ + L +L SQ P+L WA+ +G+ S ++L
Sbjct: 108 LQEFVELIDAHDRLVSQLSHRPSLRRWAQTVGMEIPLLKERLSVGKHRWAEVVNCSVKEL 167
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 168 ERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 227
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 228 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 265
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 91/140 (65%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
+LT +EE L QI L+ E+++ +L R PT E A+ +G+ + L
Sbjct: 338 MLTPEEEVSLSRQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDPERFRRNLAEARR 397
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++++++ ANLRLVV +AK+Y +G+ L DL+QEGS+GL+++ EKF + GCRF++YA WW
Sbjct: 398 AKDRMVAANLRLVVSIAKRYMRKGLPLEDLIQEGSLGLIRAAEKFDDRRGCRFSTYATWW 457
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
V+Q++ +A+ R +RLPV
Sbjct: 458 VKQSVMRALADQGRIVRLPV 477
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 110/207 (53%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEF---ELIAQIQDLIRLE------------------KEK 292
D +R++L +LL DEE + + + Q LI+L + +
Sbjct: 47 TDLVRVYLQEIGRVRLLGRDEEVAEAQKVQRYQRLIQLRDKAAAEEKGILETFAMLLQTR 106
Query: 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
S+L +Q G P+L WA G+ DLK + +G ++
Sbjct: 107 SRLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKAK 166
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++Y+YWW+R
Sbjct: 167 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIR 226
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SRTIRLPV +T L+ I
Sbjct: 227 QGITRAIATQSRTIRLPVHITEKLNKI 253
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 99/155 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +R++L LLT+D+E Q+Q +I +++++ +L Q REPT E A +
Sbjct: 6 SDLIRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLN 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + L G +++K+I ANLRLVV +AK+YQ R + DL+QEG++GL + +EKF
Sbjct: 66 TTQAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRGIEKF 125
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G + ++YAYWWV Q I +AI + SRT+RLP+
Sbjct: 126 DPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPI 160
>gi|307150096|ref|YP_003885480.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306980324|gb|ADN12205.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 298
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 103/162 (63%), Gaps = 22/162 (13%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL-EKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL ++EE +L ++Q ++ L E +K L + E +IE
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEIQLATKVQKMLSLLELKKDNLAAA---EQKIIE------ 57
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
G +++++I ANLRLVV +AK+YQ RG+SL DL+QEGS+GL+++VEKF
Sbjct: 58 -----------QGQRAKQQMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKF 106
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLS 414
P G +F++YAYWWVRQ I +A+ + SRTIRLP+ MT NL+
Sbjct: 107 DPSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLN 148
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 112/206 (54%), Gaps = 43/206 (20%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL--------------------IAQIQDLIRLEKEKS 293
ND LRL+L LLT++EE L IA I+ L+ LE+ +
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 294 KLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSELHSGNSSRE 331
+ + PT EWA+A GL ++L+ L G +R+
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SRTIRLPV +T L+ I
Sbjct: 199 GITRAIATQSRTIRLPVHITEKLNRI 224
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 108/208 (51%), Gaps = 45/208 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL--------EKE-------------K 292
D +RL+L +LL DEE ++Q IRL E+E +
Sbjct: 103 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIRLLELRNTAAEQEEGLIRRYVELIEAR 162
Query: 293 SKLQSQFGREPTL-----------------------IEWAKAIGLSCRDLKSELHSGNSS 329
+L +Q G P+L WA+ G++ L + G +
Sbjct: 163 DRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEALDQMITEGIQA 222
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 223 KDHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 282
Query: 390 RQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RQ I +AI SRTIRLPV +T L+ I
Sbjct: 283 RQGITRAIATQSRTIRLPVHITEKLNKI 310
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 23/154 (14%)
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN------------------ 327
+RL + + +L S+ G P+L WA + DL+ L +G
Sbjct: 112 LRLVEVQERLTSELGHRPSLERWAATADIVLSDLRPTLANGKRRWAEIAKLTVEELEQVQ 171
Query: 328 ----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++
Sbjct: 172 SQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFST 231
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 232 YAYWWIRQGITRAIATSSRTIRLPVHITEKLNKI 265
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 106/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL +EE Q+Q ++L ++K
Sbjct: 50 TDLVRLYLQDIGRVPLLGKEEEVAKAQQVQRYVQLINLRTKAAKNGNAAIARFVEIVDTH 109
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SR 330
L SQ G P+L WA A+ ++ +LK L G ++
Sbjct: 110 DRLVSQLGLRPSLERWAAAVKMNVFELKQALTEGKRHWAEIAGMDVQELDRIQKAGIRAK 169
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 170 EHMIEANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 229
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SR IRLPV +T L+ I
Sbjct: 230 QGITRAIATQSRIIRLPVHITEKLNKI 256
>gi|218440090|ref|YP_002378419.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172818|gb|ACK71551.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 24/164 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI-RLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R +L LL ++EE +L ++Q+++ LEKE
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLEKE---------------------N 45
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L+ + K + G ++ K+I ANLRLVV +AK+YQ RG+SL DL+QEGS+GL+++VEKF
Sbjct: 46 LTAAE-KKIVEQGQIAKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKF 104
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWWVRQ I +A+ + SRTIRLP+ MT NL+ +
Sbjct: 105 DPSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLNQL 148
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 93/155 (60%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D L +L LL EE L QIQ + E + LQ G EP+ EWA A+G
Sbjct: 48 GDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALG 107
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +L EL + ++ ++ ANLRLVV VAK+Y+ + +S DL+QEG+ GL+K+ EKF
Sbjct: 108 MDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKF 167
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P+ G +F++YA WW++Q+I + I SR IRLPV
Sbjct: 168 DPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPV 202
>gi|116071891|ref|ZP_01469159.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
gi|116065514|gb|EAU71272.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
Length = 355
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 42/194 (21%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQ--------------------DLIRLEKEKSKLQ 296
+RL+L LLT++EE L +Q +L RLE+ + +
Sbjct: 1 MRLYLQDIGRVDLLTSEEEVTLARLVQRRETLLKQQRELSDTNPAIGELHRLEELQRREA 60
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSE----------------------LHSGNSSREKLI 334
+ PT EWA+A GLS ++L+S L +G +++ +I
Sbjct: 61 NHHSHWPTKQEWARAAGLSLQELQSRIDAGYVAWAEQAAIEAKELKLSLRNGRRAKDHMI 120
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394
ANLRLVV VAK+YQ RG+ + DL+QEG++GL ++VEKF P G RF++YAYWW+RQ +
Sbjct: 121 QANLRLVVAVAKKYQQRGMEILDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGMT 180
Query: 395 KAIFQHSRTIRLPV 408
+AI SRTIRLPV
Sbjct: 181 RAIATQSRTIRLPV 194
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ GL+ L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 180 WAEIAGLTVEQLEQIQTQGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLVQEGTLGLE 239
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 240 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 289
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 23/160 (14%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P L WAK +S +LK+ L +G
Sbjct: 104 AQLQQFVKLMEVRDQLIAQLAHCPPLERWAKTAQISVPELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLEQAVKKFDPSK 223
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
G RF++YAYWW+RQ + +AI SR IRLPV +T L+ I
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATQSRLIRLPVHITEKLNKI 263
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 14/149 (9%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTA+EE EL +I+ R ++ + +L ++ + G R+L+ E+ GN
Sbjct: 62 LLTANEEVELSERIE---RGDEAEERLATE----------DQLSGTQRRNLEHEVERGND 108
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+R LI ANLRLVV +AK+Y GRG+SL DL+QEG++GLM++VEKF + G RF++YA WW
Sbjct: 109 ARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAVEKFDHRKGNRFSTYATWW 168
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ + ++I + RTIRLPV M+ ++S +
Sbjct: 169 IRQAVTRSIAEQGRTIRLPVHMSESVSQV 197
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 205 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 264
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 265 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 324
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ ++S+T RLP
Sbjct: 325 GFRISTYVYWWIRQGVSRALAENSKTFRLP 354
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 22/151 (14%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P+L WAK + +LK+ L +G
Sbjct: 104 AQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVKKFDPTK 223
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G RF++YAYWW+RQ + +AI S+ IRLPV
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATKSQIIRLPV 254
>gi|297608012|ref|NP_001061065.2| Os08g0163400 [Oryza sativa Japonica Group]
gi|255678168|dbj|BAF22979.2| Os08g0163400 [Oryza sativa Japonica Group]
Length = 520
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 206 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 265
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 266 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 325
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ ++S+T RLP
Sbjct: 326 GFRISTYVYWWIRQGVSRALAENSKTFRLP 355
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 50/218 (22%)
Query: 239 RKASVKKK-LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS 297
RK +VKKK +E D +R++L +LL A+EE EL QI DL+ LE + L
Sbjct: 59 RKDAVKKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDNLTL 113
Query: 298 QFGREPTLIEWAKAI----------------GLSCRDLKSELHSGNS------------- 328
Q R+P+ +EW K + +D+ S L + ++
Sbjct: 114 QLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQQPN 173
Query: 329 ---------------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+++K++ +NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF
Sbjct: 174 KNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKF 233
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
+ G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 234 DHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 271
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 109/207 (52%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ----------------DL-----IRLEKEK 292
D +RL+L LL DEE + ++Q DL + L +++
Sbjct: 61 TDLVRLYLQDIGRVPLLKKDEEVQNAQELQRYMQLLELRSSAVKKGDLTLNTFVNLVEKR 120
Query: 293 SKLQSQFGREPTLIEWAKAI----------------------GLSCRDLKSELHSGNSSR 330
+L SQ G P+L +WA A GL ++L+ +G ++
Sbjct: 121 DQLTSQLGHRPSLEKWADAAEVSVFEVKQILNEGKRHWANLAGLKVQELEQIQKAGIEAK 180
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+R
Sbjct: 181 NHMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 240
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI SR IRLPV +T L+ I
Sbjct: 241 QGITRAIATQSRIIRLPVHITEKLNKI 267
>gi|307152083|ref|YP_003887467.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982311|gb|ADN14192.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 418
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 95/158 (60%), Gaps = 23/158 (14%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS------------- 328
I++ + L +++ +L SQ G P+L A A ++ +LK L+ G
Sbjct: 110 IKNFVSLIEKRDQLTSQLGHRPSLERLADAAEITVFELKKTLYEGKRHWAELANLEVQEL 169
Query: 329 ---------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P G
Sbjct: 170 ERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLERAVDKFDPTKGY 229
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RF++YAYWW+RQ I +AI SR IRLPV +T L+ I
Sbjct: 230 RFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKI 267
>gi|113953359|ref|YP_732042.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
gi|113880710|gb|ABI45668.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
Length = 376
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 106/197 (53%), Gaps = 42/197 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK-------------LQSQFG 300
ND LRL+L LLTA++E L +Q RL++E+ + L+
Sbjct: 19 NDLLRLYLQDIGRVDLLTAEDEVVLSRLVQQYERLKREERQFAEDHPAIERLLCLEELQL 78
Query: 301 RE-------PTLIEWAKA----------------------IGLSCRDLKSELHSGNSSRE 331
RE PT EWA+A I R+L+ L G +R+
Sbjct: 79 REANHLSHWPTRQEWARAAEMPLQELNKGLTQGYETWANLISTDSRELQLRLRRGRKARD 138
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF G RF++Y+YWW+RQ
Sbjct: 139 RMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERAVEKFDSTRGFRFSTYSYWWIRQ 198
Query: 392 TIRKAIFQHSRTIRLPV 408
I +AI SRTIRLPV
Sbjct: 199 GITRAIATQSRTIRLPV 215
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 22/151 (14%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + + +L +Q P+L WAK + +LK+ L +G
Sbjct: 104 AQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGLEVG 163
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++V+KF P
Sbjct: 164 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVKKFDPTK 223
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G RF++YAYWW+RQ + +AI S+ IRLPV
Sbjct: 224 GYRFSTYAYWWIRQGMTRAIATKSQIIRLPV 254
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ G +L+ G ++E +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 157 WAQVTGCEVNELEKIQKDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 216
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 217 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 266
>gi|125602291|gb|EAZ41616.1| hypothetical protein OsJ_26150 [Oryza sativa Japonica Group]
Length = 420
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 106 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 165
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 166 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 225
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ ++S+T RLP
Sbjct: 226 GFRISTYVYWWIRQGVSRALAENSKTFRLP 255
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
+SE D D + FL LLTA+EE L Q+Q ++ L +++ +S G
Sbjct: 1 MSESLDLQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMVTLLEQRQPHESVEG------ 54
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
W++ +G+ +L+ L G +++++++ NLRLVV +AK+Y+ RG+ DL+QEG++GL
Sbjct: 55 -WSQRLGIPLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGL 113
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
++VEKF P G +F++YA WW+RQ++ + I R IRLP +
Sbjct: 114 TRAVEKFDPTRGYKFSTYATWWIRQSVNRGIQNKGRMIRLPAHMY 158
>gi|87125501|ref|ZP_01081346.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86166801|gb|EAQ68063.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 312
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 16/170 (9%)
Query: 241 ASVKKKLSEGFDR--NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 298
AS+ L+E R +DP+ +L LLT EE EL Q+Q+++RL ++ +
Sbjct: 2 ASLAAGLAESQRRRSSDPISWYLATIGRIPLLTPAEEIELGNQVQEMMRLTEDGTLAPDH 61
Query: 299 FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358
G S D + + G ++E+++ ANLRLVV VAK+YQG+G+ L DL
Sbjct: 62 DG-------------FSSHD-RRMIRVGKRAKERMMKANLRLVVSVAKKYQGKGLELLDL 107
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+QEGS+GL ++VEKF P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 108 IQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 93/145 (64%), Gaps = 3/145 (2%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 223 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 279
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q+G GL++ EKF G RF+
Sbjct: 280 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFS 339
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLP 407
+Y++WW++Q IRK++ + ++ IRLP
Sbjct: 340 TYSHWWIKQAIRKSVLEQTQIIRLP 364
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
Query: 261 LWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
+ GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 222 MTGP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLR 278
Query: 321 SELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q+G GL++ EKF G R
Sbjct: 279 RRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFR 338
Query: 381 FASYAYWWVRQTIRKAIFQHSRTIRLP 407
F++Y++WW++Q IRK++ + ++ IRLP
Sbjct: 339 FSTYSHWWIKQAIRKSVLEQTQIIRLP 365
>gi|78185801|ref|YP_378235.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78170095|gb|ABB27192.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 377
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 106/196 (54%), Gaps = 42/196 (21%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQ---DLIRLEKEKSKLQSQFG----------R 301
D LRL+L LLT++EE L +Q L++ ++E S G R
Sbjct: 21 DLLRLYLQDIGRVDLLTSEEEVTLARLVQRRETLLKQQRELSDTNQAIGELHRLEELQRR 80
Query: 302 E-------PTLIEWAKAIGLS----------------------CRDLKSELHSGNSSREK 332
E PT EWA+A L+ ++LK L +G +++
Sbjct: 81 EANHHSHWPTKQEWARAAALTLQELQNRIDAGYEAWAEKAAIDAKELKLSLRNGRRAKDH 140
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I ANLRLVV VAK+YQ RG+ + DL+QEG++GL ++VEKF P G RF++YAYWW+RQ
Sbjct: 141 MIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQG 200
Query: 393 IRKAIFQHSRTIRLPV 408
+ +AI SRTIRLPV
Sbjct: 201 MTRAIATQSRTIRLPV 216
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 93/145 (64%), Gaps = 3/145 (2%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
GP +LLTA++E E IQDL++LE + ++ EPT +WA A G L+
Sbjct: 124 GP---RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRR 180
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L+ G + +++ +N+RLV+ +AK+++G G+ DL+Q+G GL++ EKF G RF+
Sbjct: 181 LNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFS 240
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLP 407
+Y++WW++Q IRK++ + ++ IRLP
Sbjct: 241 TYSHWWIKQAIRKSVLEQTQIIRLP 265
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 149 WAELANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 208
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P G RF++Y+YWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 209 RAVEKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 258
>gi|125560253|gb|EAZ05701.1| hypothetical protein OsI_27933 [Oryza sativa Indica Group]
Length = 372
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 58 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 117
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 118 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 177
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ ++S+T RLP
Sbjct: 178 GFRISTYVYWWIRQGVSRALAENSKTFRLP 207
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 46/203 (22%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI-- 312
D +R++L +LL A+EE EL +I DL++LE+ + L + +EPT +W K I
Sbjct: 60 DSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEELDQEPTDEQWGKRIFQ 119
Query: 313 ---------GLSCRD-----------------------------------LKSELHSGNS 328
S ++ K L+ G
Sbjct: 120 WENIEQMLRAQSSKEKEPKWSEVTDMLQKAEIISDLEKTWKLESKAYLPKFKRRLYLGRK 179
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
+++K++++NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW
Sbjct: 180 AKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 239
Query: 389 VRQTIRKAIFQHSRTIRLPVMTF 411
+RQ I +AI SRTIRLPV +
Sbjct: 240 IRQAITRAIADQSRTIRLPVHLY 262
>gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 74 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 133
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 134 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 193
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ ++S+T RLP
Sbjct: 194 GFRISTYVYWWIRQGVSRALAENSKTFRLP 223
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 147 WAELANLSVEELKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 206
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P G RF++Y+YWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 207 RAVEKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 256
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 4/158 (2%)
Query: 251 FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
F +DP+R++L LLT DEE +L ++ E++ +L Q RE + A
Sbjct: 167 FAIDDPVRMYLKEIGKVPLLTPDEEVDLAQRMASGAEAERKLKELTGQ--REAG--DPAA 222
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
A LK LHSG ++++KL ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+V
Sbjct: 223 ATKEEEAALKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 282
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 283 EKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 320
>gi|218248849|ref|YP_002374220.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257061911|ref|YP_003139799.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218169327|gb|ACK68064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256592077|gb|ACV02964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 417
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 92/158 (58%), Gaps = 23/158 (14%)
Query: 282 IQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS------------- 328
IQ LI + + +L G P+ WAKA +S +LK+ L G
Sbjct: 109 IQQLIEMAEIHDRLFISLGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQL 168
Query: 329 ---------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G
Sbjct: 169 ETIEKVGIRAKEQMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGLERAVEKFDPTKGY 228
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RF++YAYWW+RQ I +AI SR IRLPV +T L+ I
Sbjct: 229 RFSTYAYWWIRQGITRAISTQSRIIRLPVHITEKLNKI 266
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 18/210 (8%)
Query: 203 PLEEVKQFSQPRFLERRSKKRKV----SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLR 258
P+ E + R LER + + P HE + +G +DP+R
Sbjct: 52 PVAEPASETVERILERTVGDHDLFDHHADPCHALHEQDDDSLDHDLDADVDGIGVDDPVR 111
Query: 259 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 318
++L LLTA EE L Q++ R E+ +LQ+ + T +E +
Sbjct: 112 VYLREIGRVNLLTAQEEIMLAQQVE---RGEQANERLQNG---DYTPVERLQ-------- 157
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L + G ++RE+LI ANLRLVV +AK+Y GRG+SL DL+QEG++GLM++ EKF + G
Sbjct: 158 LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKG 217
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+F++YA WW+RQ I + I SRTIRLPV
Sbjct: 218 YKFSTYATWWIRQAITRVIADQSRTIRLPV 247
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 102/178 (57%), Gaps = 30/178 (16%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
LT +E L QD L K++ +L ++ GREPT EW+ +G+S ++++E+ G +
Sbjct: 84 LTDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEEVRNEIERGRRA 143
Query: 330 REKLINANLRLVVHVAKQYQGRG-----------------------------ISLHDLLQ 360
R +L+ +NLRLV+ +A +Y+ R I L DL+Q
Sbjct: 144 RARLVASNLRLVLAIANRYKSRAVVRSAWKSRSKGGMDMPSHEKVRLQRQHNIFLGDLIQ 203
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIY 417
EG++GL+++ EKF P G +F++YA WW+RQ I++ + +HSRTIRLP +T +L IY
Sbjct: 204 EGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLPNHVTESLRQIY 261
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 23/146 (15%)
Query: 294 KLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
+L +Q G P+ WA G++ +LK L +G ++E
Sbjct: 126 RLTAQLGHRPSPERWASTAGIALAELKPRLAAGKQRWAELAQMTVAEIDALQLAGTRAKE 185
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
+I ANLRLVV VAK+YQ RG+ L DL+QEG+MGL ++V+KF P G RF++YAYWW+RQ
Sbjct: 186 HMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVDKFDPTKGYRFSTYAYWWIRQ 245
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SR IRLPV +T L+ I
Sbjct: 246 GITRAIATQSRNIRLPVHITEKLNKI 271
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA+ LS +LK G +++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 125 WAELANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 184
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P G RF++Y+YWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 185 RAVEKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 234
>gi|323454681|gb|EGB10551.1| hypothetical protein AURANDRAFT_23034 [Aureococcus anophagefferens]
Length = 388
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI---EWAKAIGLSCRDLKSELH 324
+LL ADEE L ++Q L E ++ L + GR + WA+A+ +S DL++
Sbjct: 69 RLLNADEEVALAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRAARS 128
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
G +R L +ANLRLVV +AK+Y+ G++ DLLQEG+ GL ++VE+F P+ G RF++Y
Sbjct: 129 RGVDARSTLTSANLRLVVSIAKRYRFCGLAQEDLLQEGAFGLSRAVERFDPERGFRFSTY 188
Query: 385 AYWWVRQTIRKAIFQHSRTIRLP 407
A +W+RQ + +A + SR IRLP
Sbjct: 189 ATFWIRQAVLRACAEQSRVIRLP 211
>gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 28 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 87
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 88 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 147
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ ++S+T RLP
Sbjct: 148 GFRISTYVYWWIRQGVSRALAENSKTFRLP 177
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 43/203 (21%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK-------------LQSQFGRE- 302
+RL+L LLTA++E L +Q RL++E+ + L+ RE
Sbjct: 1 MRLYLQDIGRVDLLTAEDEVVLSRLVQQYERLKREERQFAEDHPAIERLLCLEELQLREA 60
Query: 303 ------PTLIEWAKA----------------------IGLSCRDLKSELHSGNSSREKLI 334
PT EWA+A I RDL+ L G +R+++I
Sbjct: 61 NHLSHWPTRQEWARAAEMPLQELNLALTEGYQTWADLITSDSRDLQRRLREGRKARDRMI 120
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394
ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF G RF++Y+YWW+RQ I
Sbjct: 121 QANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERAVEKFDSTRGFRFSTYSYWWIRQGIT 180
Query: 395 KAIFQHSRTIRLPV-MTFNLSPI 416
+AI SRTIRLPV +T L+ I
Sbjct: 181 RAIATQSRTIRLPVHITEKLNRI 203
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
+G +LT EE E +++ LE + ++ EPT +WA+A+G+ L
Sbjct: 122 FGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDK 181
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
L +G SRE++ + RLVV +A +YQG+G+SL DL+QEGS+GL++ E+F P G +
Sbjct: 182 MLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKL 241
Query: 382 ASYAYWWVRQTIRKAIFQHSRTIRLP 407
++Y YWW+RQ I +AI SR IRLP
Sbjct: 242 STYVYWWIRQAIVRAIANKSRIIRLP 267
>gi|428780485|ref|YP_007172271.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694764|gb|AFZ50914.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 328
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LLT ++E L Q+Q ++ L ++K +L+ + RE T EW + L
Sbjct: 18 DMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMGLIEQKEELEKELEREVTEEEWVEKTEL 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
+ +L+ + GN ++ K+I ANLRLVV +AK+YQ R + DL+QEG++GL + VEKF
Sbjct: 78 TSAELQKAIKDGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
P G +F++YAYWW+RQ I +AI Q +R IRLP+ +T L+ I
Sbjct: 138 PTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPIHITEKLNKI 180
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|317969130|ref|ZP_07970520.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CB0205]
Length = 309
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 18/154 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+ +L LLT EE EL Q+Q ++RL +E G T E
Sbjct: 18 DPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLAEEDK------GEAYTTHE------- 64
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
K + G S+E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 65 -----KKIMRVGKRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFD 119
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 120 PTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 153
>gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor [Cyanidium caldarium]
Length = 589
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 89/139 (64%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
L+ +EE E+ +I LE + L+ + GR P EWA +S +L+ +L G +
Sbjct: 272 LSLEEEKEICQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRRA 331
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+ +++ ANLRLV+ AK+++ RG++ DL+QEGS+GL++ VEK+ G RF++YA WW+
Sbjct: 332 KNRMVAANLRLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWWI 391
Query: 390 RQTIRKAIFQHSRTIRLPV 408
RQ I KA+ + S+ RLPV
Sbjct: 392 RQGIHKALLECSKMFRLPV 410
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 98/170 (57%), Gaps = 27/170 (15%)
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN-- 327
A +E LIA+ LI + + +L +Q G +P+L WA G+ +LK + G
Sbjct: 104 VASQEEGLIARFVHLIEV---RDRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQ 160
Query: 328 --------------------SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 161 WAELAEMTVETIERIQAEGVEAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 220
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
++VEKF P G RF++YAYWW+RQ I +AI SRTIRLPV +T L+ I
Sbjct: 221 RAVEKFDPTRGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKI 270
>gi|254527154|ref|ZP_05139206.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538578|gb|EEE41031.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 313
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKINEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|318042101|ref|ZP_07974057.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 309
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 98/155 (63%), Gaps = 18/155 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++RL +E EP G
Sbjct: 17 SDPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLTEE----------EP-------ENG 59
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + K+ + G S+E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 60 YTDQQKKT-IRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 118
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 119 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 153
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ-FGREPTLIEWAKAI 312
D LR +L LL+ ++E L Q+Q+L+ LE+ + +L + G EP+ A
Sbjct: 24 GDSLRSYLRDIGRVPLLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELLAAEA 83
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
GL+ L+ LH+G ++E+++ ANLRLVV VAK+Y R + L DL+QEG++GL++ VEK
Sbjct: 84 GLTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 143
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F P G +F++YAYWW+RQ I +AI + SRTIRLP+
Sbjct: 144 FDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 179
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P L EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|123969020|ref|YP_001009878.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199130|gb|ABM70771.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 313
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKVNEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 102/165 (61%), Gaps = 7/165 (4%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
++E + D + FL LLTA+EE L Q+Q ++ L +++ + +S L
Sbjct: 1 MAENLELQDAVGRFLKIIGRYSLLTAEEELHLAHQVQRMMALLEQRRQHES-------LE 53
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+W++ +G+ +L+ L G +++++++ NLRLVV +AK+Y+ RG+ DL+QEG++GL
Sbjct: 54 DWSRRLGIPLEELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQEGTIGL 113
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
++VEKF P G +F++YA WW+RQ++ + I R IRLP +
Sbjct: 114 TRAVEKFDPTRGYKFSTYATWWIRQSVNRGIQNKGRLIRLPAHMY 158
>gi|159901184|ref|YP_001547431.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159894223|gb|ABX07303.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 375
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 34/172 (19%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD----LIRLEK------EKSKLQ 296
+ EG +DP+R++L LLTA EE L Q++ +IRL + EK++LQ
Sbjct: 69 IREGVSLDDPVRMYLREIGQVHLLTAHEETMLAKQLERGERAMIRLARHEYLLEEKARLQ 128
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
Q L+SE ++R+ LI ANLRLVV +AK+Y GRG+S
Sbjct: 129 QQV-------------------LESE-----AARQHLIQANLRLVVSIAKKYVGRGMSFL 164
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEG++GLM++ EKF G +F++YA WW+RQ I ++I HSRTIRLPV
Sbjct: 165 DLIQEGNIGLMRATEKFDYHKGFKFSTYATWWIRQAITRSISDHSRTIRLPV 216
>gi|172036788|ref|YP_001803289.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|354554599|ref|ZP_08973903.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698242|gb|ACB51223.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|353553408|gb|EHC22800.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 420
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 74/102 (72%)
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+WA + ++L+ SG S++++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 159 QWATLANIDIQELEEIQKSGIRSKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGL 218
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
K+VEKF P G RF++YAYWW+RQ I +AI SR IRLPV
Sbjct: 219 EKAVEKFDPIKGYRFSTYAYWWIRQGITRAIATQSRIIRLPV 260
>gi|81300366|ref|YP_400574.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
gi|81169247|gb|ABB57587.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
Length = 310
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 95/149 (63%), Gaps = 18/149 (12%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTAD+E EL ++Q ++ L +E S + T E A + G
Sbjct: 32 LLTADQEIELGQKVQVMMNLLEETSS-------DRTFTEAETA----------AIQLGQR 74
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++I ANLRLVV VAK+YQG+G+ DL+QEG++GL ++VEKF P G +F++YA+WW
Sbjct: 75 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 134
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ++ +AI SRTIRLPV +T LS I
Sbjct: 135 IRQSMTRAIACQSRTIRLPVHLTERLSQI 163
>gi|309792450|ref|ZP_07686915.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225522|gb|EFO79285.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 311
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 75/90 (83%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L+ ++H+G ++R +LIN+NLRLVV +A++YQG G+SL DL+QEGS+GLM++V+KF P G
Sbjct: 64 LEQQVHAGANARAQLINSNLRLVVSIARRYQGHGLSLLDLIQEGSLGLMRAVDKFDPSRG 123
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+F++YA +W+RQ++ +AI H RT+RLPV
Sbjct: 124 LKFSTYATYWIRQSVGRAIADHGRTVRLPV 153
>gi|56750024|ref|YP_170725.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
gi|56684983|dbj|BAD78205.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
Length = 316
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 95/149 (63%), Gaps = 18/149 (12%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTAD+E EL ++Q ++ L +E S + T E A + G
Sbjct: 38 LLTADQEIELGQKVQVMMNLLEETSS-------DRTFTEAETA----------AIQLGQR 80
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++E++I ANLRLVV VAK+YQG+G+ DL+QEG++GL ++VEKF P G +F++YA+WW
Sbjct: 81 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 140
Query: 389 VRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
+RQ++ +AI SRTIRLPV +T LS I
Sbjct: 141 IRQSMTRAIACQSRTIRLPVHLTERLSQI 169
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
+G +LT EE E +++ LE + ++ EPT +WA+A+G+ L
Sbjct: 15 FGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDK 74
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
L +G SRE++ + RLVV +A +YQG+G+SL DL+QEGS+GL++ E+F P G +
Sbjct: 75 MLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKL 134
Query: 382 ASYAYWWVRQTIRKAIFQHSRTIRLP 407
++Y YWW+RQ I +AI SR IRLP
Sbjct: 135 STYVYWWIRQAIVRAIANKSRIIRLP 160
>gi|157413850|ref|YP_001484716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388425|gb|ABV51130.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 313
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKIKEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 92/140 (65%), Gaps = 6/140 (4%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL DEE EL +++ + + + ++ LQ+ G + A + ++ + L+S L+ G
Sbjct: 79 LLKPDEEVELARRVRFIEEVRELQASLQATKG------QVAAELDMTEKQLESRLYQGRV 132
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I +NLRLVV +AK+Y RG+ DL+QEG+MGL ++ EKF P G +F++YAYWW
Sbjct: 133 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 192
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ I +AI +RTIRLP+
Sbjct: 193 IRQAITRAIANDARTIRLPI 212
>gi|78185087|ref|YP_377522.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|116072338|ref|ZP_01469605.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|78169381|gb|ABB26478.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
gi|116064860|gb|EAU70619.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 313
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 22/159 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLTA EE EL Q+Q ++ ++ SK
Sbjct: 17 SDPVSWYLSTIGRIPLLTAAEEIELGNQVQAMMAFTEDGSK------------------D 58
Query: 314 LSCRDLKSE----LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
DL ++ L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++
Sbjct: 59 FKVEDLTTKQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERA 118
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
VEKF P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 119 VEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND +R++L LLTA+EE EL I+ + E L E KA G
Sbjct: 70 NDLVRIYLREIGKVPLLTAEEEVELAKAIE-------------AGLFAEDKLCE-KKAAG 115
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ C +L+ + G ++++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 116 IECPELEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 175
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 176 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 210
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|126696812|ref|YP_001091698.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126543855|gb|ABO18097.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 313
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKTNEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA EE L Q++ R E+ +LQ ++A +
Sbjct: 103 DDPVRVYLREIGRVNLLTAQEEIMLAQQVE---RGEQASERLQKG--------DYAPSER 151
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L L + G ++RE+LI ANLRLVV +AK+Y GRG+SL DL+QEG++GLM++ EKF
Sbjct: 152 LQ---LHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKF 208
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ G +F++YA WW+RQ I + I SRTIRLPV
Sbjct: 209 DYRKGYKFSTYATWWIRQAITRVIADQSRTIRLPV 243
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 101/178 (56%), Gaps = 30/178 (16%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
LT +E L QD L K++ +L ++ GREPT EW+ +G+S +++ + G +
Sbjct: 84 LTDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEEVRKRIERGRRA 143
Query: 330 REKLINANLRLVVHVAKQYQGRG-----------------------------ISLHDLLQ 360
RE+L+ +NLRLV+ +A +Y+ R I L DL+Q
Sbjct: 144 RERLVASNLRLVLAIANRYKLRAVVCSAWKSRSKGGMDMPSHEKVRLQRQHNIFLGDLIQ 203
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIY 417
EG++GL+++ EKF P G +F++YA WW+RQ I++ + +HSRTIRLP +T +L IY
Sbjct: 204 EGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLPNHVTESLRQIY 261
>gi|427412602|ref|ZP_18902794.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
gi|425716409|gb|EKU79393.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
Length = 394
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 32/179 (17%)
Query: 232 NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291
++E +++ S+ + EG + +DP+R++L LL+ADEE L QI+
Sbjct: 89 SNEVREAKEVSLDLSIPEGVNIDDPVRMYLKEIGRVPLLSADEEILLAQQIE-------- 140
Query: 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKS--ELHSGNSSREKLINANLRLVVHVAKQYQ 349
+D S E+ +G +++KLI+ANLRLVV +AK+Y
Sbjct: 141 ----------------------AGAKDDASYKEMKAGEKAKQKLIDANLRLVVSIAKRYV 178
Query: 350 GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
GRG+ DL+QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 179 GRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 237
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 115/204 (56%), Gaps = 28/204 (13%)
Query: 237 NSRKASVKKKLSEG----FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ-------DL 285
+SR + V+++ S+G DP+R++L LLTA EE +L +I+ +L
Sbjct: 58 SSRASKVRRRSSDGSSAVMLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATAEL 117
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
R E E +L + R T +E A+GL + ++LI ANLRLVV +A
Sbjct: 118 ERAEDEGIELNRRDKRRLTRVE---AVGLDAK-------------QQLIEANLRLVVSIA 161
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ DL+QEG++GL+++VEKF G +F++YA WW+RQ I +AI +RTIR
Sbjct: 162 KRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIR 221
Query: 406 LPV-MTFNLSPIYIFKFYVFSSLN 428
+PV M ++ + + + LN
Sbjct: 222 IPVHMVETINKLVRIQRQLLQDLN 245
>gi|126660028|ref|ZP_01731150.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
gi|126618706|gb|EAZ89453.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
Length = 418
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+WA + ++L SG +++++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL
Sbjct: 157 QWATEANIDVKELDEIQKSGIRAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGL 216
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
K+VEKF P G RF++YAYWW+RQ I +AI SR IRLPV +T L+ I
Sbjct: 217 EKAVEKFDPIKGYRFSTYAYWWIRQGITRAIATQSRIIRLPVHITEKLNKI 267
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|352096241|ref|ZP_08957121.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351676935|gb|EHA60086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 313
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLTA EE EL Q+Q + L ++ S A +
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMELTQDGSV-------------SADSEE 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S +D + + G ++++++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 64 FSSKD-RRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D +RL+L LL EE EL +I + LE+++SK Q+ W ++
Sbjct: 39 DDLVRLYLQEIGRVALLKPAEEIELARRIATWLSLEEKRSKFQAVAAES-----WLESAN 93
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
L+ + + + G ++ L+ ANLRLVV VAK+YQGRG+ L DL+QEG++GL+++ EKF
Sbjct: 94 LTPQQWSTIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKF 153
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIRLPV
Sbjct: 154 DYTRGFKFSTYATWWIRQGITRAIAMQARTIRLPV 188
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 105/196 (53%), Gaps = 39/196 (19%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK------------------------ 290
D +R++L +LL A+EE EL +I DL++LE+
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 291 ----EKSK-------LQSQFGRE----PTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EKS+ +++ G+ P + EW K L+ G ++EK++
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +AK+Y RG+S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 396 AIFQHSRTIRLPVMTF 411
AI SRTIRLPV +
Sbjct: 247 AIADQSRTIRLPVHLY 262
>gi|67920853|ref|ZP_00514372.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856970|gb|EAM52210.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 297
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 93/155 (60%), Gaps = 23/155 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI-RLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL++ EE +L +IQ ++ LEKE Q RE I
Sbjct: 8 DTVRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLEKE------QLSREEEKI------- 54
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ G +RE++I ANLRLVV +AK+Y G+SL DL+QEGS+GL++ VEKF
Sbjct: 55 ---------VAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKF 105
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SRTIRLP+
Sbjct: 106 DPARGYKFSTYAYWWIRQGITRAIAEQSRTIRLPI 140
>gi|148240072|ref|YP_001225459.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147848611|emb|CAK24162.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 313
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 20/158 (12%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL--QSQF-GREPTLIEWAK 310
+DP+ +L LLT EE EL Q+Q L++L ++ S QF G++ LI
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMQLTEDGSIAADSDQFDGKQRRLI---- 72
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
G ++++++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++V
Sbjct: 73 -------------RVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAV 119
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EKF P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 120 EKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|452819932|gb|EME26982.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 544
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGNS 328
L+ +EE ++ QIQ L E+E+ ++ GR PTL EWA+A+G S + ++
Sbjct: 219 LSFEEEVDICNQIQLLRTWERERDRVSELLGRNPTLAEWAEAVGFSDSVEFARKIKGLRE 278
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S++K+I++NLRLV ++A+ Y G+SL DL+QEGS+GL+K+ E+F G RF SYA WW
Sbjct: 279 SKDKIIHSNLRLVYYIARFYSKYGLSLQDLMQEGSIGLIKAAERFDSSKGFRFGSYAIWW 338
Query: 389 VRQTIRKAIFQHSRTIRLPVMTF 411
++ + +A+ + +R R+P +
Sbjct: 339 IKYAMTRALTEQTRHWRIPAYFY 361
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 100/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + +L +I+D I L++++SKL+ + G EP+ + A+++ +S
Sbjct: 217 RIYLRGSVSKELLTHKQVVQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTP 276
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S + +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 277 ELRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLGVELPDLIQGGLIGLLRGIEKFDASR 336
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +S+T RLP
Sbjct: 337 GFRISTYVYWWIRQGVSRALADNSKTFRLP 366
>gi|416379954|ref|ZP_11684013.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357265758|gb|EHJ14479.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 297
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 93/155 (60%), Gaps = 23/155 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI-RLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL++ EE +L +IQ ++ LEKE Q RE I
Sbjct: 8 DTVRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLEKE------QLSREEEKI------- 54
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ G +RE++I ANLRLVV +AK+Y G+SL DL+QEGS+GL++ VEKF
Sbjct: 55 ---------VAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKF 105
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SRTIRLP+
Sbjct: 106 DPARGYKFSTYAYWWIRQGITRAIAEQSRTIRLPI 140
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 47/229 (20%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDR---NDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286
+ ET +RK S ++ + D +R++L +LL A+EE EL +I DL+
Sbjct: 32 IVEPETKKTRKISASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLL 91
Query: 287 RLEKEKSKLQSQFGREPTLIEWAKAI----GLSCR------------------------- 317
+LE+ + L + +EP +W I + R
Sbjct: 92 QLERIREALWEELDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIIS 151
Query: 318 DL---------------KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEG 362
DL K L+ G +++K++++NLRLVV +AK+Y RG+S DL+QEG
Sbjct: 152 DLEKTWKQQSKAYLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEG 211
Query: 363 SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
S+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 212 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 260
>gi|113954655|ref|YP_729975.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113882006|gb|ABI46964.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 313
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 98/155 (63%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLTA EE EL Q+Q + L ++ S P E+
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMELTQDGSV-------SPDSEEF----- 64
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S +D + + G ++++++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 65 -SSKD-RRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|33861845|ref|NP_893406.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640213|emb|CAE19748.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 313
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L K
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMMVL-TEDGQLNE------------KTKE 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +D K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 64 FTPQD-KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|78779769|ref|YP_397881.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713268|gb|ABB50445.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 313
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L E +L + T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMIL-TEDGQLNEKIKEFTT--------- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 ----QQKRIIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|334117906|ref|ZP_08491997.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333461015|gb|EGK89623.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 421
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 109/208 (52%), Gaps = 45/208 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRL---------EKE------------K 292
D +RL+L +LL DEE ++Q I+L ++E +
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIGRFVHLIEVR 122
Query: 293 SKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN----------------------SS 329
+L +Q G +P+L WA G+ +LK + G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVEAIERVQAEGVEA 182
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
++ +I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P G RF++YAYWW+
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 242
Query: 390 RQTIRKAIFQHSRTIRLPV-MTFNLSPI 416
RQ I +AI SRTIRLPV +T L+ I
Sbjct: 243 RQGITRAIATQSRTIRLPVHITEKLNKI 270
>gi|416375138|ref|ZP_11683291.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
gi|357266581|gb|EHJ15189.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
Length = 418
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 108/206 (52%), Gaps = 44/206 (21%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK-------------------- 294
D +RL+L LLT +EE Q+Q + L + +++
Sbjct: 62 DLVRLYLQDIGRVPLLTKEEEVSKSRQVQRYVELLEIRNQAAENDDEIMKQFVQVHGIHD 121
Query: 295 -LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------------------SRE 331
L + G P+ +WAKA +S +LK L G S +++
Sbjct: 122 QLMAYLGHRPSWEKWAKASEVSVFELKEILVQGKSQWAVLANMDVAELEEIQKSGIKAKD 181
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391
++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL K+VEKF P G RF++YAYWW+RQ
Sbjct: 182 EMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGLEKAVEKFDPVKGYRFSTYAYWWIRQ 241
Query: 392 TIRKAIFQHSRTIRLPV-MTFNLSPI 416
I +AI SR IRLPV +T L+ I
Sbjct: 242 GITRAIATQSRIIRLPVHVTEKLNKI 267
>gi|307155201|ref|YP_003890585.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306985429|gb|ADN17310.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 295
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 86/140 (61%), Gaps = 23/140 (16%)
Query: 269 LLTADEEFELIAQIQDLIRL-EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
LL A +E EL Q+Q ++ L +KE PT E K + G
Sbjct: 21 LLNAQQEIELATQVQKMMALIDKEN----------PTPEE------------KRIIQQGK 58
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ K+INANLRLVV +AK+YQ RG+S DL+QEGS+GL++ VEKF P G +F++YAYW
Sbjct: 59 RAKRKMINANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLIRGVEKFDPSKGYKFSTYAYW 118
Query: 388 WVRQTIRKAIFQHSRTIRLP 407
W+RQ + +AI SRTIRLP
Sbjct: 119 WIRQAMTRAIADQSRTIRLP 138
>gi|225377779|ref|ZP_03755000.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
gi|225210363|gb|EEG92717.1| hypothetical protein ROSEINA2194_03430 [Roseburia inulinivorans DSM
16841]
Length = 426
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G DP+R++L LL+A+EE EL ++ +++ + L+S+ E E
Sbjct: 111 DGVSIEDPVRMYLKEIGKVPLLSAEEEIELAKNMEAGAVAKEKIAILKSR--EEKATEEE 168
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
I ++L+ +L +G+ ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 169 LAEIKEEIKNLQKDLDAGDEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 228
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+VEKF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 229 AVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 268
>gi|33866155|ref|NP_897714.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639130|emb|CAE08136.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 313
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ SK E + G
Sbjct: 17 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMTLTEDGSKT----------FEDHELTG 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L+ G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 KQRRMLRI----GRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|22298042|ref|NP_681289.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
gi|22294220|dbj|BAC08051.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 375
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 78/111 (70%), Gaps = 4/111 (3%)
Query: 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357
Q GR+ WAKA ++ +L+ G ++ +L+ ANLRLVV++AK+YQ G+ D
Sbjct: 109 QAGRQA----WAKAANITLSELQHIERQGQRAKNQLLQANLRLVVNIAKKYQHHGVEFLD 164
Query: 358 LLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L+QEGS+GL ++VEKF P G RF++YAYWW+RQ+I +A+ SRTIRLP+
Sbjct: 165 LIQEGSLGLERAVEKFDPTKGFRFSTYAYWWIRQSITRAVASQSRTIRLPI 215
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 97/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 190 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAP 249
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++ + +RE L +N+RLV+ +A +Y G+ L DL+Q G +GL++ +EKF
Sbjct: 250 ELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASR 309
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +S+T RLP
Sbjct: 310 GFRISTYVYWWIRQGVSRALADNSKTFRLP 339
>gi|425453974|ref|ZP_18833723.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
gi|389799829|emb|CCI20645.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
Length = 443
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 95/168 (56%), Gaps = 31/168 (18%)
Query: 280 AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS----------- 328
AQ+Q ++L + +L ++ P+L WAK +S +LK+ L +G
Sbjct: 125 AQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQRWAHLAGLEVG 184
Query: 329 -----------SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
++E++I ANLRLVV VAK+YQ RG+ L DL+QEG++GL ++VEKF P
Sbjct: 185 ELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTK 244
Query: 378 GCRFASYAYWWVRQTIRKA--------IFQHSRTIRLPV-MTFNLSPI 416
G RF++YAYWW+RQ + A I SR IRLPV +T L+ I
Sbjct: 245 GYRFSTYAYWWIRQGMTIAVATRSLREIATQSRMIRLPVHITEKLNKI 292
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 17/157 (10%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ--DLIRLEKEKSKLQSQFGREPTLIEWAKA 311
+DP+R++L LLTA++E EL ++ D+ R ++ + S GRE +E A A
Sbjct: 92 DDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYTS--GRERMELERAYA 149
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
+G C SR+ LI ANLRLVV +AK+Y G+++ DL+QEG++GLM++VE
Sbjct: 150 LG--C-----------ESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVE 196
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
KF G +F++YA WW+RQ I +AI SRTIRLPV
Sbjct: 197 KFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 99/150 (66%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A+++ +S
Sbjct: 147 RIYLRGTVSKELLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTP 206
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S + +RE L +N+RLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 207 ELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASR 266
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +S+T RLP
Sbjct: 267 GFRISTYVYWWIRQGVSRALADNSKTFRLP 296
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 97/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL G EP+ + A+++ +S
Sbjct: 192 RIYLRGTVSKELLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTP 251
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S + +RE L +N+RLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 252 ELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASR 311
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +SRT RLP
Sbjct: 312 GFRISTYVYWWIRQGVSRALADNSRTFRLP 341
>gi|116073370|ref|ZP_01470632.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068675|gb|EAU74427.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 313
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q L+ L +Q G P +
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMAL--------TQDGTIPI-----DSDQ 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S +D + + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 64 FSSKD-RRIIRVGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|87301096|ref|ZP_01083937.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87284064|gb|EAQ76017.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 308
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 96/155 (61%), Gaps = 18/155 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q +++L + S P+L +
Sbjct: 16 SDPISWYLGTIGRVPLLTPAEEIELGNQVQAMMQL------IDSGVEDPPSLRQ------ 63
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 64 ------KQLLRLGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 117
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 118 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 152
>gi|6682869|dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 101/151 (66%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
L+ ++ G + +LLT E +L +IQ + LE++KS+L+ + G EP+ + A ++ +S
Sbjct: 193 LKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAVSLKMSR 252
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
DL+S L + +RE+L +N+RLV+ +A++Y G + DL+Q G +GL++ +EKF P
Sbjct: 253 TDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLLRGIEKFDPS 312
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G + ++Y YWW+RQ + +A+ ++SRT+RLP
Sbjct: 313 KGYKISTYVYWWIRQGVSRALVENSRTLRLP 343
>gi|383763158|ref|YP_005442140.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383426|dbj|BAM00243.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 441
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 10/157 (6%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG--REPTLIEWAKAI 312
DP+R++L LLTA+EE EL +I+ + +E EK KLQ FG E L +
Sbjct: 105 DPVRMYLRDIGRHPLLTAEEEMELAEKIR--LGVEAEK-KLQELFGGRSEDELTDEE--- 158
Query: 313 GLSCRD-LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
L +D L+ +H G + +L +NLRLVV VAK+Y GRG++ DL+QEG++GL+++V+
Sbjct: 159 -LDQKDELEMLVHQGRMAHSRLAQSNLRLVVSVAKRYIGRGLNFLDLIQEGNLGLLRAVD 217
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
KF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 218 KFDHTLGFKFSTYATWWIRQAISRAIADQARTIRIPV 254
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 89/139 (64%)
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
+T +EE L +IQ + ++ + +L + GR + A +G + L G +
Sbjct: 47 VTPEEEIHLARRIQAKLAIDGAREELAMRLGRPSPEEDVAAFMGRDPKALIEATRQGLWA 106
Query: 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389
+ KLINANLRLVV +AK+Y GR + DL+QEG++GLM++ EKF P+ G RF++YA WW+
Sbjct: 107 QRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGNIGLMRATEKFDPEKGYRFSTYATWWI 166
Query: 390 RQTIRKAIFQHSRTIRLPV 408
RQ+I +AI +RTIRLP+
Sbjct: 167 RQSITRAIANQARTIRLPI 185
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + A+ +
Sbjct: 93 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFAAEK--LSEARRVT 138
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
++ R DL++ GN ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEK
Sbjct: 139 VALRVDLEAVERDGNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 198
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 199 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 234
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 17/159 (10%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G NDP+R++L LLT EE +L +IQ+ I E E ++ +
Sbjct: 90 GVRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEAELAETNEMTPK-------- 141
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ + + G ++++KL ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+
Sbjct: 142 ---------IDAAIIRGENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 192
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 193 VEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 231
>gi|123966683|ref|YP_001011764.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201049|gb|ABM72657.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 313
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+ +L LLT EE EL Q+Q ++ L ++ L E K
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMMTLTEDGQ-----------LNEKTKEF- 64
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 65 --TPQQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 98/155 (63%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +++ ++ +++ L+ + E +
Sbjct: 302 DDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSEEDMMNLE 361
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ LK++ G +++KL ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+VEKF
Sbjct: 362 AQIKILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKF 421
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 422 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 456
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 96/155 (61%), Gaps = 10/155 (6%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R++L +LL+ADEE I+ + +++ L+++ +
Sbjct: 95 NDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDAD--------- 145
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R LK + G S+ +L+ ANLRLVV +AK++ GRG+ DL+QEG+MGLMK+V+KF
Sbjct: 146 -TERQLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQEGNMGLMKAVDKF 204
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 205 DYRRGYKFSTYATWWIRQAITRAIADQARTIRIPV 239
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 13/164 (7%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP--T 304
+ + F +DP+R++L LL++DEE EL + +++ ++LQ P
Sbjct: 136 MVDSFGTDDPVRMYLKEIGKVNLLSSDEEIELAQAMGAGAEAKEQLAELQESGEEIPAEV 195
Query: 305 LIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
L E KAI G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++
Sbjct: 196 LAELNKAI-----------KRGERAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNL 244
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 245 GLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 288
>gi|254432880|ref|ZP_05046583.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
gi|197627333|gb|EDY39892.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
Length = 331
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 20/176 (11%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+ +L LLT EE EL Q+Q +++L E +K P+ + K +
Sbjct: 41 DPISWYLASIGREPLLTPAEEIELGNQVQAMMQL-LEAAK--------PSYSDHEKKL-- 89
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
L G S+++++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 90 --------LRIGKRSKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFD 141
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSSLNA 429
P G +F++YA+WW+RQ++ +AI SRTIRLPV ++ LS I + L A
Sbjct: 142 PTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLSAIRKVSLDLAHKLGA 197
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 96/162 (59%), Gaps = 14/162 (8%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
+EG ND +RL+L LL ++E EL ++D + ++E LIE
Sbjct: 94 NEGISVNDTVRLYLREIGLVPLLKGEQEVELARAMEDGDKAQQE-------------LIE 140
Query: 308 WAKAIGLSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+ R L+ + G +RE L ANLRLVV VAK+Y GRG+SL DL+QEG++GL
Sbjct: 141 NDHTLSDVERLALRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGL 200
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+++VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 201 IRAVEKFNYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 242
>gi|395236960|ref|ZP_10415090.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|394487844|emb|CCI83178.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 339
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 12/154 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTAD+E EL QI+ + E + R AK
Sbjct: 40 DLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHDEPLTR-------AKK--- 89
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 90 --RDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 147
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
Q G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 148 YQKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 181
>gi|427704523|ref|YP_007047745.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427347691|gb|AFY30404.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 306
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 94/144 (65%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR--DL-KSELH 324
+LLT ++E L ++Q ++ L + ++ A G +C DL K L
Sbjct: 16 QLLTPEQELTLGRKVQAMVSLNERCAQ--------------AGGSGPACEFDDLEKRTLR 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
+G ++++++ ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEKF P G RF++Y
Sbjct: 62 NGERAKQQMVTANLRLVVNLAKRYQGKGLDLLDLIQEGTIGLTRAVEKFDPTRGHRFSTY 121
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 6/114 (5%)
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
LQS F + WA+ LS +L+ L G +++++INANLRLVV +AK+YQ RG+
Sbjct: 122 LQSGFQK------WAELADLSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRGLD 175
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L DL+QEG++GL K+VEKF + G F++Y+YWW+RQ + +AI SR+IR+P+
Sbjct: 176 LLDLIQEGTLGLEKAVEKFDYRKGYHFSTYSYWWIRQGMTRAIATQSRSIRIPI 229
>gi|423350097|ref|ZP_17327750.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
gi|404387959|gb|EJZ83050.1| RNA polymerase sigma factor sigB [Turicella otitidis ATCC 51513]
Length = 329
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 12/154 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTAD+E EL QI+ + E + R AK
Sbjct: 30 DLVRVYLNGIGKTDLLTADDEVELAKQIEVGLYAEHVLADHDEPLTR-------AKK--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 80 --RDLKVLARQGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
Q G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 138 YQKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|443323548|ref|ZP_21052553.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442786728|gb|ELR96456.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 381
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 107/207 (51%), Gaps = 44/207 (21%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------- 294
D +RL+L LL+ +EE L +IQ ++L + +++
Sbjct: 27 TDLVRLYLQDIGKIPLLSKEEEVVLAQKIQRYLQLLELRAQACQQLDPVMAEFARLITVH 86
Query: 295 --LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN----------------------SSR 330
L +Q G P+L WAK L +LK L +G ++
Sbjct: 87 DHLAAQLGHRPSLKTWAKTGNLEITELKQILTTGKLCWAQIAKLELKELEMIQKAGIEAK 146
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
L+ ANLRLVV +AK+YQ RG+ L DL+QEG++GL K+V+KF P G RF++YAYWW+R
Sbjct: 147 NTLLAANLRLVVSIAKKYQNRGLELLDLIQEGTLGLEKAVDKFDPTKGYRFSTYAYWWIR 206
Query: 391 QTIRKAIFQHSRTIRLPV-MTFNLSPI 416
Q I +AI S TIR+PV +T L+ I
Sbjct: 207 QGITRAIATQSHTIRIPVHITEKLNKI 233
>gi|72382695|ref|YP_292050.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|124026414|ref|YP_001015529.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|72002545|gb|AAZ58347.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|123961482|gb|ABM76265.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 313
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q L+ L E +++ Q +K
Sbjct: 17 SDPISWYLSSIGRVPLLTPAEEIELGNQVQTLMSL-TEDGQIKEQ----------SKEFT 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 66 SHQRRL---IRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|339443528|ref|YP_004709533.1| hypothetical protein CXIVA_24640 [Clostridium sp. SY8519]
gi|338902929|dbj|BAK48431.1| hypothetical protein CXIVA_24640 [Clostridium sp. SY8519]
Length = 435
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 102/161 (63%), Gaps = 13/161 (8%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE-KSKLQSQFGREPTLIE 307
+G + +DP+R++L LLTA+EE +L +++ I +K + ++Q E
Sbjct: 129 DGINIDDPVRMYLKEIGKVPLLTAEEEIDLAMKMEAGINADKALEEDTENQLSEEEK--- 185
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
K + ++ R+ G +++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+
Sbjct: 186 --KQLTITSRE-------GENAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 236
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
K+VEKF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 237 KAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 277
>gi|342213895|ref|ZP_08706614.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
gi|341597483|gb|EGS40042.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
Length = 410
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 28/183 (15%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S + E ++ ++ + EG + +DP+R++L LL+ DEE L QI
Sbjct: 99 SDIDIATEEDDEEKEINLDLSIPEGMNIDDPVRMYLKEIGRVPLLSGDEEIILAQQI--- 155
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
E G + + E+ G+S+++KLI+ANLRLVV +A
Sbjct: 156 ---------------------EAGNQEGATYK----EVRLGSSAKQKLIDANLRLVVSIA 190
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ DL+QEG++GL+K+V+KF G +F++YA WW+RQ I +AI +RTIR
Sbjct: 191 KRYVGRGMLFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYATWWIRQAITRAIADQARTIR 250
Query: 406 LPV 408
+PV
Sbjct: 251 IPV 253
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 104/183 (56%), Gaps = 24/183 (13%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ-------DLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +I+ +L R E E +L + R T +
Sbjct: 90 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRV 149
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
E A+GL + ++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 150 E---AVGLDAK-------------QQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 193
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFS 425
+++VEKF G +F++YA WW+RQ I +AI +RTIR+PV M ++ + + +
Sbjct: 194 IRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQ 253
Query: 426 SLN 428
LN
Sbjct: 254 DLN 256
>gi|260434805|ref|ZP_05788775.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260412679|gb|EEX05975.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 312
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 99/155 (63%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ S+ + + G T
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMSLTEDGSR-EFEDGELTT--------- 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R L L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 66 -AQRRL---LRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 121
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 122 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 156
>gi|428769135|ref|YP_007160925.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
gi|428683414|gb|AFZ52881.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
Length = 399
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 74/101 (73%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
WA + +L++ L +G +++K+INANLRLVV +AK+YQ RG+ L DL+QEG++GL
Sbjct: 139 WANLAQVKLSELETILANGIKAKQKMINANLRLVVSIAKKYQNRGLELLDLIQEGTLGLE 198
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
K+VEKF G F++YAYWW+RQ + +AI +RTIRLP+
Sbjct: 199 KAVEKFDHTKGYHFSTYAYWWIRQGMTRAIATQARTIRLPI 239
>gi|365924947|ref|ZP_09447710.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266363|ref|ZP_14768838.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394425595|gb|EJE98541.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 374
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 44/174 (25%)
Query: 238 SRKASVKKKLSE--GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295
+ KAS +K +S G NDP+R++L LLTADEE L +I++
Sbjct: 84 AEKASSEKNVSAPAGVKINDPVRMYLKEIGRVNLLTADEEVALALKIEE----------- 132
Query: 296 QSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS-SREKLINANLRLVVHVAKQYQGRGIS 354
GN S+++L ANLRLVV +AK+Y GRG+S
Sbjct: 133 ------------------------------GNEESKQRLAEANLRLVVSIAKRYVGRGMS 162
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEG+MGLMK+VEKF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 163 FLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPV 216
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 16/168 (9%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ----SQFGRE 302
L + F +DP+R++L LL DEE +L QD+ + K+++ ++ E
Sbjct: 126 LVDSFGIDDPVRMYLKEIGKVNLLNPDEEVQLA---QDMGAGDAAKARMAEIEAAEKRGE 182
Query: 303 PTLI--EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
P ++ E KA LK ++ G +++++L ANLRLVV +AK+Y GRG+ DL+Q
Sbjct: 183 PIVLTPEEEKA-------LKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 235
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 236 EGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 283
>gi|427702480|ref|YP_007045702.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427345648|gb|AFY28361.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 310
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 19/140 (13%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT EE EL Q+Q ++ L +E G S ++ K+ + G
Sbjct: 33 LLTPAEEIELGNQVQAMMHLVEESKT------------------GYSVQENKT-IKVGRR 73
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
S+E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF P G +F++YA+WW
Sbjct: 74 SKERMMRANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWW 133
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ++ +AI SR IRLPV
Sbjct: 134 IRQSMTRAIACQSRAIRLPV 153
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 97/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL G EP+ + A+++ +S
Sbjct: 192 RIYLRGTVSKELLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTP 251
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S + +RE L +N+RLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 252 ELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASR 311
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +S+T RLP
Sbjct: 312 GFRISTYVYWWIRQGVSRALADNSKTFRLP 341
>gi|169630111|ref|YP_001703760.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus ATCC
19977]
gi|365870954|ref|ZP_09410495.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|397679875|ref|YP_006521410.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
gi|414582578|ref|ZP_11439718.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|418247832|ref|ZP_12874218.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|418421133|ref|ZP_12994309.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709733|ref|ZP_14237201.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|420881197|ref|ZP_15344564.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420884840|ref|ZP_15348200.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420889538|ref|ZP_15352886.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420897176|ref|ZP_15360515.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899659|ref|ZP_15362991.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420905543|ref|ZP_15368861.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420910637|ref|ZP_15373949.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917089|ref|ZP_15380393.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922254|ref|ZP_15385551.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927916|ref|ZP_15391198.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932132|ref|ZP_15395407.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420938383|ref|ZP_15401652.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942390|ref|ZP_15405647.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420946950|ref|ZP_15410200.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952649|ref|ZP_15415893.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956818|ref|ZP_15420055.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961864|ref|ZP_15425089.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967525|ref|ZP_15430729.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420972741|ref|ZP_15435934.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|420978256|ref|ZP_15441434.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983641|ref|ZP_15446808.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420992777|ref|ZP_15455924.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998629|ref|ZP_15461766.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003066|ref|ZP_15466190.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421007918|ref|ZP_15471029.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013609|ref|ZP_15476690.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018559|ref|ZP_15481617.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024676|ref|ZP_15487720.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029721|ref|ZP_15492753.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035126|ref|ZP_15498146.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421050031|ref|ZP_15513025.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169242078|emb|CAM63106.1| RNA polymerase sigma factor [Mycobacterium abscessus]
gi|353452325|gb|EHC00719.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus 47J26]
gi|363994757|gb|EHM15975.1| RNA polymerase sigma factor SigB [Mycobacterium massiliense CCUG
48898 = JCM 15300]
gi|363997600|gb|EHM18811.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus subsp.
bolletii BD]
gi|382943614|gb|EIC67928.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M93]
gi|392080603|gb|EIU06429.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392086106|gb|EIU11931.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087286|gb|EIU13108.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392096488|gb|EIU22283.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392101006|gb|EIU26797.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392103447|gb|EIU29233.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392112631|gb|EIU38400.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392117730|gb|EIU43498.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392121229|gb|EIU46995.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132090|gb|EIU57836.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135149|gb|EIU60890.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136891|gb|EIU62628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143898|gb|EIU69623.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149817|gb|EIU75531.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392153980|gb|EIU79686.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157961|gb|EIU83658.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392165633|gb|EIU91319.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392166530|gb|EIU92215.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168637|gb|EIU94315.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392185561|gb|EIV11210.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186441|gb|EIV12088.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194524|gb|EIV20144.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199371|gb|EIV24981.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201957|gb|EIV27555.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208434|gb|EIV34008.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211473|gb|EIV37039.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224473|gb|EIV49993.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392225858|gb|EIV51373.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392238634|gb|EIV64127.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
gi|392249329|gb|EIV74804.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250032|gb|EIV75506.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253717|gb|EIV79185.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|395458140|gb|AFN63803.1| RNA polymerase sigma factor sigB [Mycobacterium massiliense str. GO
06]
Length = 323
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +G
Sbjct: 25 DLVRVYLNGIGKTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 70
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +DL + GN++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 71 ARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 131 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|419716788|ref|ZP_14244183.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|420864424|ref|ZP_15327814.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869215|ref|ZP_15332597.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873659|ref|ZP_15337036.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420987323|ref|ZP_15450479.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|421039706|ref|ZP_15502715.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421044014|ref|ZP_15507015.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|382940349|gb|EIC64673.1| RNA polymerase sigma factor SigB [Mycobacterium abscessus M94]
gi|392068685|gb|EIT94532.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071399|gb|EIT97245.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072687|gb|EIT98528.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392181602|gb|EIV07253.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392224798|gb|EIV50317.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392237866|gb|EIV63360.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
Length = 323
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +G
Sbjct: 25 DLVRVYLNGIGKTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 70
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +DL + GN++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 71 ARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 131 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|88809137|ref|ZP_01124646.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88787079|gb|EAR18237.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 313
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q L++L ++ S + L + +
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQKLMQLTEDGS-----IAADSELFDSKQ--- 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + G ++++++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 69 ------RRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 97/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 35 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAP 94
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++ + +RE L +N+RLV+ +A +Y G+ L DL+Q G +GL++ +EKF
Sbjct: 95 ELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASR 154
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +S+T RLP
Sbjct: 155 GFRISTYVYWWIRQGVSRALADNSKTFRLP 184
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 216
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 217 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 251
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 200 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 234
>gi|157412994|ref|YP_001483860.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157387569|gb|ABV50274.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 307
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 95/141 (67%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++YAYW
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYW 123
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + KA+ SRTIR+PV
Sbjct: 124 WIRQGLNKALSTQSRTIRIPV 144
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 200 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 234
>gi|218442621|ref|YP_002380941.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
gi|218174979|gb|ACK73711.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
Length = 308
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 92/141 (65%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LL + +E +L +IQ +L+ + + Q + G++ ++ ++ L + G
Sbjct: 22 ELLNSSQEIDLGQKIQKWQKLKHQFVQFQKKTGKKTSVFDFCSDFQLEEAEFYLVYEEGQ 81
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ +L+ NLRLV+++AK+Y GRG+S DLLQEG++GL+++ E F+P G +F++YAYW
Sbjct: 82 QAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQEGNIGLIRAAELFEPSKGYKFSTYAYW 141
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ I +AI +RTIRLPV
Sbjct: 142 WIRQQIIRAINNSARTIRLPV 162
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 216
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 217 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 251
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 14/156 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA EE +L K++ TL++ +
Sbjct: 86 DDPVRMYLQEIGQVPLLTAAEEVDL-------------AKKMEVAHAANDTLLQDDGMLE 132
Query: 314 LSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
S R LK + +G ++R+ LI ANLRLVV +AK+Y G+++ DL+QEG++GLM++VEK
Sbjct: 133 HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEK 192
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
F G +F++YA WW+RQ I +AI SRTIRLPV
Sbjct: 193 FDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPV 228
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E + K
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAVATKKTSP 156
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 157 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 216
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 217 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 251
>gi|159903877|ref|YP_001551221.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889053|gb|ABX09267.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 96/164 (58%), Gaps = 32/164 (19%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ S
Sbjct: 17 SDPISWYLSTIGRVPLLTPAEEIELGNQVQVMMNLTEDGSI------------------- 57
Query: 314 LSCRDLKSE---------LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
D+KSE + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+
Sbjct: 58 ----DVKSEEFTSHQRRLIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSL 113
Query: 365 GLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
GL ++VEKF P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 114 GLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|78184480|ref|YP_376915.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78168774|gb|ABB25871.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 309
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR---DLKSELH 324
+LLT ++E L ++Q ++ + EP LI A G SC + + +
Sbjct: 17 QLLTPEQELMLGRKVQAMVAIT------------EPCLI--AGGTGPSCEYNDNQRFVIR 62
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
G ++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++Y
Sbjct: 63 RGERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 122
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 123 AYWWIRQGLNRALSTQSRTIRIPV 146
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Query: 269 LLTADEEFELIAQIQD--LIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
LLTADEE L +Q+ L+ E+ KL++ G P+L WA ++ LS R L+ +L
Sbjct: 27 LLTADEEISLGRAVQNGRLLLEAAEELKLRA-GGEAPSLEAWASSVNLSPRQLQRQLRLA 85
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 386
+ E+++ ANLRLVV +A++ R + L DL+QEG++GL+++V++F P G +F++YA
Sbjct: 86 ERASEQMVTANLRLVVSLARRISHRRLDLDDLIQEGTLGLIRAVQRFDPSRGYKFSTYAT 145
Query: 387 WWVRQTIRKAIFQHSRTIRLPV 408
WW+R+ + +A+ Q SRTIRLP
Sbjct: 146 WWIREGMGRALQQQSRTIRLPA 167
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 120/238 (50%), Gaps = 47/238 (19%)
Query: 176 EAASLAENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHET 235
E A LAE+ L+ EF ++ L P +E+ V + E
Sbjct: 90 EIADLAEDEVLDEDEFDEVDALGDLDEPEDEL----------------------VRDREE 127
Query: 236 YNSR-KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD----LIRLEK 290
+R +A +LS NDP+R +L LLT +EE L +I++ RL++
Sbjct: 128 IEARAEAMAGSRLS----TNDPVRQYLHEIGRVSLLTLEEEISLARRIEEGEAAQKRLDE 183
Query: 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350
E L + R LK + G +R+ LI ANLRLVV +AK+Y G
Sbjct: 184 EGDSLPER----------------EQRALKRIVEDGEMARQHLIEANLRLVVSIAKKYTG 227
Query: 351 RGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
RG+S DL+QEG+ GL+++VEKF+ + +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 228 RGLSFLDLIQEGNQGLIRAVEKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPV 285
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 9/155 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + KL+ Q E IE +A
Sbjct: 140 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGL---DAADKLEKQ---EAGEIELTRA-- 191
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 192 -EMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 250
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 251 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPV 285
>gi|124025343|ref|YP_001014459.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123960411|gb|ABM75194.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. NATL1A]
Length = 307
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 93/141 (65%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E L ++Q ++ L + + Q G P E++ A K +G
Sbjct: 15 ELLTPEQELTLGREVQAMVALNE---RCQQAGGNGPE-CEYSSAE-------KKRFKAGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P+ G RF++YAYW
Sbjct: 64 RAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPKRGHRFSTYAYW 123
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 124 WIRQGLNRALSTQSRTIRIPV 144
>gi|72381853|ref|YP_291208.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. NATL2A]
gi|72001703|gb|AAZ57505.1| possible type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
Length = 307
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 94/141 (66%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E L ++Q ++ L + + Q G P E++ A K + +G
Sbjct: 15 ELLTPEQELTLGREVQAMVALNE---RCQQAGGHGPE-CEYSSAE-------KKKFKAGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P+ G RF++YAYW
Sbjct: 64 RAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPKRGHRFSTYAYW 123
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 124 WIRQGLNRALSTQSRTIRIPV 144
>gi|159903122|ref|YP_001550466.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159888298|gb|ABX08512.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 312
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 95/143 (66%), Gaps = 17/143 (11%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR--DL-KSELHS 325
LLT +EE + ++Q ++ L EKSKL ++ G +C DL + +
Sbjct: 16 LLTPEEELTMGRKVQAMVAL-LEKSKL-------------SEGKGEACEYTDLERRTIRQ 61
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G ++ ++I +NLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P+ G RF++YA
Sbjct: 62 GERAKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPKRGHRFSTYA 121
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
YWW+RQ + +A+ SRTIR+PV
Sbjct: 122 YWWIRQGLNRALSTQSRTIRIPV 144
>gi|392946711|ref|ZP_10312353.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392290005|gb|EIV96029.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 422
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 74/93 (79%)
Query: 316 CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
CRDL + G++++++L++ANLRLVV VAK+Y GRG++L DL+QEG++GL+++VEKF
Sbjct: 172 CRDLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDY 231
Query: 376 QAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +A+ +RTIR+PV
Sbjct: 232 AKGYKFSTYATWWIRQAIGRALADQARTIRIPV 264
>gi|365839537|ref|ZP_09380773.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
gi|364564505|gb|EHM42269.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
Length = 398
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 28/172 (16%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
+S +V + EG + +DP+R++L LL+A+EE L +I
Sbjct: 98 SSETVTVSLSVPEGVNIDDPVRMYLKEIGRVPLLSAEEEITLAKRI-------------- 143
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
E A G + E+ +GN +++KL +ANLRLVV +AK+Y GRG+
Sbjct: 144 ----------EAGGAEGATA----EEISTGNIAKKKLTDANLRLVVSIAKRYVGRGMLFL 189
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 190 DLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPV 241
>gi|429218921|ref|YP_007180565.1| sigma-70 family RNA polymerase sigma factor [Deinococcus
peraridilitoris DSM 19664]
gi|429129784|gb|AFZ66799.1| RNA polymerase sigma factor, sigma-70 family [Deinococcus
peraridilitoris DSM 19664]
Length = 489
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 98/155 (63%), Gaps = 13/155 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT EE L +I++ E+ ++KL++ L + A+
Sbjct: 186 NDPVRQYLHEIGRVPLLTLAEEISLARRIEEG---EEARAKLEADL----DLDDRAR--- 235
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L+ ++ G ++R+ LI ANLRLVV +AK+Y RG+ DL+QEG+ GL+++VEKF
Sbjct: 236 ---RSLQRQVEDGQAARQGLIEANLRLVVSIAKKYSNRGMGFLDLIQEGNQGLIRAVEKF 292
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ + G +F++YA WW+RQ + +AI +RTIR+PV
Sbjct: 293 EYRRGYKFSTYATWWIRQAVNRAIADQARTIRVPV 327
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 9/155 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + KL+ Q E IE +A
Sbjct: 143 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGL---DAADKLEKQ---EAGEIELTRA-- 194
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 195 -EMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 253
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 254 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPV 288
>gi|218438398|ref|YP_002376727.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171126|gb|ACK69859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 85/139 (61%), Gaps = 21/139 (15%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LL++ +E EL Q+Q+++ L +E E K I G
Sbjct: 21 LLSSQQEVELATQVQNMMAL----------LDKENLTPEEIKII-----------QQGKR 59
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K+I+ANLRLVV +AK+YQ RG+S DL+QEGS+GL++ VEKF P G +F++YAYWW
Sbjct: 60 AKRKMISANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLIRGVEKFDPSKGYKFSTYAYWW 119
Query: 389 VRQTIRKAIFQHSRTIRLP 407
+RQ + +AI SRTIRLP
Sbjct: 120 IRQAMTRAIADQSRTIRLP 138
>gi|317969234|ref|ZP_07970624.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0205]
Length = 311
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 94/144 (65%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC--RDL-KSELH 324
+LLT ++E L ++Q +++L + + A +G +C D+ K +
Sbjct: 16 QLLTPEQELMLGRKVQAMVQLHERCA--------------MAGGVGEACSYNDIEKRTMR 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
G +++++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++Y
Sbjct: 62 VGERAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|78212423|ref|YP_381202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196882|gb|ABB34647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 312
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 98/155 (63%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ ++ S+ + + G T
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMAFTEDGSR-EIEDGELTT--------- 65
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R L L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 66 -AQRRL---LRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 121
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 122 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 156
>gi|5771430|gb|AAD51396.1|AF117715_5 stationary phase specific sigma factor homolog [Legionella
pneumophila]
Length = 341
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+K+I +NLRLVV +A++Y RG+ L DL++EG++GLMKSVEKF P+ G RF+
Sbjct: 97 LKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFS 156
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 157 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 192
>gi|54294183|ref|YP_126598.1| RNA polymerase sigma factor RpoS [Legionella pneumophila str. Lens]
gi|54297202|ref|YP_123571.1| RNA polymerase sigma factor RpoS [Legionella pneumophila str.
Paris]
gi|397663719|ref|YP_006505257.1| RNA polymerase, sigma S (sigma 38) factor [Legionella pneumophila
subsp. pneumophila]
gi|397666908|ref|YP_006508445.1| RNA polymerase, sigma S (sigma 38) factor [Legionella pneumophila
subsp. pneumophila]
gi|53750987|emb|CAH12398.1| RNA polymerase sigma factor RpoS [Legionella pneumophila str.
Paris]
gi|53754015|emb|CAH15486.1| RNA polymerase sigma factor RpoS [Legionella pneumophila str. Lens]
gi|307609996|emb|CBW99528.1| RNA polymerase sigma factor RpoS [Legionella pneumophila 130b]
gi|395127130|emb|CCD05318.1| RNA polymerase, sigma S (sigma 38) factor [Legionella pneumophila
subsp. pneumophila]
gi|395130319|emb|CCD08557.1| RNA polymerase, sigma S (sigma 38) factor [Legionella pneumophila
subsp. pneumophila]
Length = 341
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+K+I +NLRLVV +A++Y RG+ L DL++EG++GLMKSVEKF P+ G RF+
Sbjct: 97 LKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFS 156
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 157 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 192
>gi|148358826|ref|YP_001250033.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
str. Corby]
gi|296106871|ref|YP_003618571.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
2300/99 Alcoy]
gi|148280599|gb|ABQ54687.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
str. Corby]
gi|295648772|gb|ADG24619.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
2300/99 Alcoy]
Length = 341
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+K+I +NLRLVV +A++Y RG+ L DL++EG++GLMKSVEKF P+ G RF+
Sbjct: 97 LKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFS 156
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 157 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 192
>gi|123968168|ref|YP_001009026.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123198278|gb|ABM69919.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. AS9601]
Length = 307
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 95/141 (67%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++YAYW
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYW 123
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 124 WIRQGLNRALSTQSRTIRIPV 144
>gi|302670285|ref|YP_003830245.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
gi|302394758|gb|ADL33663.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
Length = 521
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 97/160 (60%), Gaps = 10/160 (6%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
+G DP+R++L LLTAD+E +L ++ EKE + + +
Sbjct: 214 DGISIEDPVRMYLKEIGKVPLLTADQEIDLAQAMEAGADAEKELADDK----------DV 263
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
K ++L + ++ G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 264 NKLSDARKKELNAIIYEGEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 323
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+VEKF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 324 AVEKFDFRKGFKFSTYATWWIRQAITRAIADQARTIRIPV 363
>gi|78778962|ref|YP_397074.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78712461|gb|ABB49638.1| putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 307
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 95/141 (67%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++YAYW
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYW 123
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 124 WIRQGLNRALSTQSRTIRIPV 144
>gi|325283594|ref|YP_004256135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
gi|324315403|gb|ADY26518.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
Length = 487
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 18/158 (11%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQD--LIRLE-KEKSKLQSQFGREPTLIEWAK 310
NDP+R +L LLT +EE L +I+D R+E +EK + GR
Sbjct: 184 NDPVRQYLHEIGRVPLLTLEEEIALARRIEDGEFARVELEEKGEELDDRGR--------- 234
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
R L+ + G ++R+ LI ANLRLVV +AK+Y GRG++ DL+QEG+ GL+++V
Sbjct: 235 ------RALQRRMEDGAAARQGLIEANLRLVVSIAKKYTGRGLNFLDLIQEGNQGLIRAV 288
Query: 371 EKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EKF+ + +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 289 EKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPV 326
>gi|126695941|ref|YP_001090827.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126542984|gb|ABO17226.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 307
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 95/141 (67%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++YAYW
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYW 123
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 124 WIRQGLNRALSTQSRTIRIPV 144
>gi|312195044|ref|YP_004015105.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226380|gb|ADP79235.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 424
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 14/175 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L LL A +E EL +++ + E KL + EP L
Sbjct: 126 DLVRMYLREIGRVPLLNAAQEVELSKRVEAGLFAEH---KLATAADLEPEL--------- 173
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK + G +++++L++ANLRLVV VAK+Y GRG++L DL+QEG++GL+++VEKF
Sbjct: 174 -HRDLKLLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFD 232
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF-NLSPIYIFKFYVFSSLN 428
G +F++YA WW+RQ I +A+ +RTIR+PV ++ I + + S+L
Sbjct: 233 YAKGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLG 287
>gi|254526924|ref|ZP_05138976.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
gi|221538348|gb|EEE40801.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
Length = 307
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 95/141 (67%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT + E + ++Q+++ L ++ Q G+ P E+++A + ++ G
Sbjct: 15 QLLTPERELTMGRKVQEMVVL---VNRCQEAGGKGPA-CEYSEA-------ERKKIKIGE 63
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++YAYW
Sbjct: 64 KAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTYAYW 123
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 124 WIRQGLNRALSTQSRTIRIPV 144
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 97/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 186 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPP 245
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++ + +RE L +N+RLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 246 ELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 305
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +S+ RLP
Sbjct: 306 GFRISTYVYWWIRQGVSRALADNSKAFRLP 335
>gi|163846411|ref|YP_001634455.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222524178|ref|YP_002568649.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163667700|gb|ABY34066.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222448057|gb|ACM52323.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 313
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 99/159 (62%), Gaps = 13/159 (8%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G +DP+ L+L LLT ++E Q L + + + + EP L
Sbjct: 8 GRSASDPIVLYLNEIGAEPLLTFEQE-------QHLAQTMSQGRRAAERLHNEPLLPLAE 60
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
K + L +++++G +R +LIN+NLRLVV +A++YQG G+SL DL+QEGS+GLM++
Sbjct: 61 K------QRLIAQVNAGEQARAQLINSNLRLVVSIARRYQGHGLSLLDLIQEGSVGLMRA 114
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
V+KF G +F++YA +W+RQ+I +AI HSRT+RLPV
Sbjct: 115 VDKFDASRGLKFSTYATYWIRQSIGRAIADHSRTVRLPV 153
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 13/155 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L +LLTA+EE +L +I+ + KL + P L
Sbjct: 101 SDPVRMYLKAIGRVRLLTAEEEVDLAKRIEAGL---FASEKLAAIRRTSPRL-------- 149
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL+++VEKF
Sbjct: 150 --RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRAVEKF 207
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ + +AI RTIR+PV
Sbjct: 208 DYTKGYKFSTYATWWIRQAVTRAIADQGRTIRIPV 242
>gi|320159820|ref|YP_004173044.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319993673|dbj|BAJ62444.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 396
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 71/91 (78%)
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++++ G S+RE LI AN RLVV +AK+Y GRG+ DL+QEG++GLMK+VEK++ Q
Sbjct: 148 ELEAQIQDGESAREHLIKANTRLVVSIAKRYIGRGVPFLDLIQEGNLGLMKAVEKYEYQR 207
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G RF++YA WW+RQTI ++I RTIR+PV
Sbjct: 208 GFRFSTYATWWIRQTITRSIADQGRTIRVPV 238
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 97/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +S
Sbjct: 186 RIYLRGTVSKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPP 245
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++ + +RE L +N+RLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 246 ELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 305
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +S+ RLP
Sbjct: 306 GFRISTYVYWWIRQGVSRALADNSKAFRLP 335
>gi|52841515|ref|YP_095314.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|378777149|ref|YP_005185586.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|52628626|gb|AAU27367.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|364507963|gb|AEW51487.1| stationary phase specific sigma factor RpoS [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 359
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+K+I +NLRLVV +A++Y RG+ L DL++EG++GLMKSVEKF P+ G RF+
Sbjct: 115 LKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFS 174
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 175 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 210
>gi|94984583|ref|YP_603947.1| RNA polymerase subunit sigma 28 [Deinococcus geothermalis DSM
11300]
gi|94554864|gb|ABF44778.1| RNA polymerase, sigma 28 subunit [Deinococcus geothermalis DSM
11300]
Length = 532
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT +EE L +I++ +E K+ + G E L + A+
Sbjct: 229 NDPVRQYLHEIGRVPLLTLEEEIALARRIEE----GEEARKMLEEAGDE--LDDRAR--- 279
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L ++ G ++R+ LI ANLRLVV +AK+Y GRG+ DL+QEG+ GL+++VEKF
Sbjct: 280 ---RRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKF 336
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ + +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 337 EYRRRYKFSTYATWWIRQAINRAIADQARTIRIPV 371
>gi|33240812|ref|NP_875754.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238341|gb|AAQ00407.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 313
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 24/160 (15%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK-----EKSKLQSQFGREPTLIEW 308
DP+ +L LLT EE EL Q+Q ++ L + EK+K + R I
Sbjct: 17 TDPISWYLATIGRVPLLTPAEEIELGNQVQVMMNLTEDGMVNEKTKKFTSHERRSIRI-- 74
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL +
Sbjct: 75 -----------------GRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLER 117
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+VEKF P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 118 AVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|312898762|ref|ZP_07758151.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
gi|310620193|gb|EFQ03764.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
Length = 437
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 30/174 (17%)
Query: 237 NSRKASVKKKLS--EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
+S +V LS EG + +DP+R++L LL+A+EE L +I+
Sbjct: 135 DSENETVNVNLSVPEGVNIDDPVRMYLKEIGRVPLLSAEEEITLAKRIE----------- 183
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
S G P E+ +GN +++KL +ANLRLVV +AK+Y GRG+
Sbjct: 184 AGSAEGATP-----------------EEVSAGNIAKKKLTDANLRLVVSIAKRYVGRGML 226
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 227 FLDLIQEGNLGLLKAVEKFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPV 280
>gi|148242708|ref|YP_001227865.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851018|emb|CAK28512.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 301
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 20/160 (12%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
KLLT ++E L ++Q ++ L+ + + S+ D K L G
Sbjct: 17 KLLTPEQELTLGRKVQAMVPLQDKPVESLSE-------------------DEKRALRLGE 57
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEKF P G RF++YAYW
Sbjct: 58 RAKNQMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKFDPTRGHRFSTYAYW 117
Query: 388 WVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSS 426
W+RQ + +A+ SRTIR+PV + L+ + K +F S
Sbjct: 118 WIRQGLNRALSTQSRTIRIPVNINEKLTKLRAAKARLFQS 157
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 87/155 (56%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
ND FL +L+ + E E+ QD + LEK K + + R+PT E A A+G
Sbjct: 399 NDGTDHFLHSSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVG 458
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ +G ++E L+ +N RLV+ V K+Y G+G+ L DL+ EG GL++ VE +
Sbjct: 459 MDVMAYNMRYDAGLKAKELLLKSNYRLVMTVCKRYIGKGMHLQDLVSEGVKGLLRGVEMY 518
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G RF +YA+WW+RQ + +++ + R +RLPV
Sbjct: 519 DASRGFRFGTYAHWWIRQAVSRSMAETGRAVRLPV 553
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 9/155 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE +L +I+ + + KL++ E +E +A
Sbjct: 150 GDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGL---EATEKLEAADAGE---LELTRA-- 201
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L + G +++ LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 202 -EIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 260
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
Q G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 261 DYQKGFKFSTYATWWIRQAITRAIADQARTIRIPV 295
>gi|299473209|emb|CBN78785.1| RNA polymerase [Ectocarpus siliculosus]
Length = 627
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 94/149 (63%), Gaps = 8/149 (5%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL--SCRDLKSELHS 325
+LLT EE EL ++Q+L+R E+ + L+ Q GR T+ EWA + L+ E+
Sbjct: 172 ELLTRTEEIELGRKVQELLRWERVRMFLELQLGRAATMEEWAAELATMDGVEGLEREIGI 231
Query: 326 GNSSREKLINANLRLVVHVAKQ--YQGRG----ISLHDLLQEGSMGLMKSVEKFKPQAGC 379
++R+++I+ NLRLVVH+A++ Y+G +SL D++Q+G+ GL+K+VE+F P+ G
Sbjct: 232 MKAARDRMISCNLRLVVHIARRKFYKGASGTLKVSLEDMIQDGTAGLVKAVERFDPEKGF 291
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
RF++YA WWV Q I R +RLP+
Sbjct: 292 RFSTYATWWVHQGIHCGFADCGRVVRLPM 320
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 ARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|124023660|ref|YP_001017967.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123963946|gb|ABM78702.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 313
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ S P E+
Sbjct: 17 SDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQDGSV-------APDDKEFTT--- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 ----HQRRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|33862619|ref|NP_894179.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33634535|emb|CAE20521.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 313
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 14/155 (9%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+ +L LLT EE EL Q+Q ++ L ++ S P E+
Sbjct: 17 SDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQDGSV-------APDDKEFTT--- 66
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF
Sbjct: 67 ----HQRRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|222056415|ref|YP_002538777.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter daltonii
FRC-32]
gi|221565704|gb|ACM21676.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
daltonii FRC-32]
Length = 358
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 86/155 (55%), Gaps = 40/155 (25%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D ++L+L + KLLTADEE EL A+I
Sbjct: 82 DDAIKLYLREIQKTKLLTADEEKELAARID------------------------------ 111
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
++R+K+I +NLRLVV +AK+Y RG+ DL++EG+MGL+K+VE+F
Sbjct: 112 ----------RGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERF 161
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
K CRF++YA WW+RQ+I +A+ SRTIRLPV
Sbjct: 162 KLSKECRFSTYATWWIRQSIERALVNQSRTIRLPV 196
>gi|555686|gb|AAA85644.1| sigma factor MysB [Mycobacterium smegmatis str. MC2 155]
Length = 319
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 ARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
RDLK + G +++++L++ANLRLVV VAK+Y GRG++L DL+QEG++GL+++VEKF
Sbjct: 173 RDLKQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYA 232
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF-NLSPIYIFKFYVFSSLN 428
G +F++YA WW+RQ I +A+ +RTIR+PV ++ I + + S+L
Sbjct: 233 KGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLG 285
>gi|269926941|ref|YP_003323564.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269790601|gb|ACZ42742.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 596
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 70/86 (81%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+ G+ +R++LI ANLRLVV +AK+Y GRGI+L DL+QEG++GL+K+VEKF+ Q G +F+
Sbjct: 249 IAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIKAVEKFRHQKGYKFS 308
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPV 408
+YA WW+RQ I +AI +RTIR+PV
Sbjct: 309 TYATWWIRQAITRAIADQARTIRIPV 334
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 99/160 (61%), Gaps = 2/160 (1%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG DP+R++L LL+ADEE EL ++D ++ + L+ + + E
Sbjct: 103 EGVSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRI--DGASEEE 160
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
I + L+ ++ G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 161 KAEIKEEIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 220
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+VEKF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 221 AVEKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPV 260
>gi|347951524|gb|AEP32898.1| RpoS [Dickeya solani]
gi|347951526|gb|AEP32899.1| RpoS [Dickeya solani]
gi|347951528|gb|AEP32900.1| RpoS [Dickeya solani]
gi|347951530|gb|AEP32901.1| RpoS [Dickeya solani]
gi|347951532|gb|AEP32902.1| RpoS [Dickeya solani]
Length = 280
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 84/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ A+ + + R L+ ++ SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 54 GEIGYSP-LLTAAEEVYFARRALRGDV----SSRRRMIESNLRLVVKIARRYNNRGLALL 108
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 109 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 168
Query: 417 YI 418
Y+
Sbjct: 169 YL 170
>gi|157374437|ref|YP_001473037.1| RpoD family RNA polymerase sigma factor [Shewanella sediminis
HAW-EB3]
gi|157316811|gb|ABV35909.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella sediminis
HAW-EB3]
Length = 323
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
+E EL Q+QD ++ + ++L S+ G P L+ + + S + LK SR +
Sbjct: 32 QENELEQQVQDDLQKNLDATQLYLSEIGFSP-LLSAEEEVYFSRKALKG----CGKSRNR 86
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQT
Sbjct: 87 MIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 146
Query: 393 IRKAIFQHSRTIRLPVMTFNLSPIYI 418
I +AI +RTIRLP+ +Y+
Sbjct: 147 IERAIMNQTRTIRLPIHVVKELNVYL 172
>gi|317493947|ref|ZP_07952364.1| RNA polymerase sigma factor RpoS [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918274|gb|EFV39616.1| RNA polymerase sigma factor RpoS [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 328
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGDDASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 177
>gi|359453456|ref|ZP_09242771.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20495]
gi|414069763|ref|ZP_11405754.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. Bsw20308]
gi|358049470|dbj|GAA79020.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20495]
gi|410807726|gb|EKS13701.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. Bsw20308]
Length = 324
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 74/99 (74%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ L ++SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 73 RKSLKGCDASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 132
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 133 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 99/160 (61%), Gaps = 2/160 (1%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
EG DP+R++L LL+ADEE EL ++D ++ + L+ + + E
Sbjct: 119 EGVSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRI--DGASEEE 176
Query: 309 AKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368
I + L+ ++ G ++++L ANLRLVV +AK+Y GRG+ DL+QEG++GL+K
Sbjct: 177 KAEIKEEIKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIK 236
Query: 369 SVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+VEKF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 237 AVEKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPV 276
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+ K +G
Sbjct: 31 DLVRVYLNGIGKTALLTAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 76
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 77 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 137 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|365835413|ref|ZP_09376833.1| RNA polymerase sigma factor RpoS [Hafnia alvei ATCC 51873]
gi|364566175|gb|EHM43874.1| RNA polymerase sigma factor RpoS [Hafnia alvei ATCC 51873]
Length = 328
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGDDASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 177
>gi|307006401|gb|ADN23472.1| RNA polymerase sigma subunit 38 [Dickeya sp. DSMZ 30178]
Length = 264
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 84/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ A+ + + R L+ ++ SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 48 GEIGYSP-LLTAAEEVYFARRALRGDV----SSRRRMIESNLRLVVKIARRYNNRGLALL 102
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 103 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 162
Query: 417 YI 418
Y+
Sbjct: 163 YL 164
>gi|170727680|ref|YP_001761706.1| RpoD family RNA polymerase sigma factor [Shewanella woodyi ATCC
51908]
gi|169813027|gb|ACA87611.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella woodyi
ATCC 51908]
Length = 322
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
E EL Q+QD ++ + ++L S+ G P L+ + + S + LK + SR +
Sbjct: 31 EGAELENQVQDDLQKNLDATQLYLSEIGFSP-LLSAEEEVYFSRKALKG----CDKSRNR 85
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQT
Sbjct: 86 MIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 145
Query: 393 IRKAIFQHSRTIRLPVMTFNLSPIYI 418
I +AI +RTIRLP+ +Y+
Sbjct: 146 IERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|441116|gb|AAA61628.1| RNA polymerase sigma factor [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|1090521|prf||2019251A RNA polymerase sigma factor
Length = 330
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 84/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ + + + RDL+ ++ +SR ++I +NLRLVV +A++Y RG++L
Sbjct: 63 GEIGYSP-LLTAEEEVYFARRDLRGDV----ASRRRMIESNLRLVVKIARRYGNRGLALL 117
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177
Query: 417 YI 418
Y+
Sbjct: 178 YL 179
>gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [Corynebacterium jeikeium K411]
gi|260578869|ref|ZP_05846775.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
gi|68263770|emb|CAI37258.1| RNA polymerase sigma factor B [Corynebacterium jeikeium K411]
gi|258603016|gb|EEW16287.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
Length = 343
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ L S++ L K
Sbjct: 45 DLVRVYLNGIGKTALLTAEDEVELSKRIE---------VGLYSEY----LLSNAEKLTRA 91
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 92 KKRDLKVLAREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 151
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 152 YTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 185
>gi|219849586|ref|YP_002464019.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219543845|gb|ACL25583.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 314
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 73/90 (81%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L +++ +G +R +LIN+NLRLVV +A++YQG G++L DL+QEGS+GLM++V+KF G
Sbjct: 64 LAAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRG 123
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+F++YA +W+RQ+I +AI HSRT+RLPV
Sbjct: 124 LKFSTYATYWIRQSIGRAIADHSRTVRLPV 153
>gi|167623164|ref|YP_001673458.1| RpoD family RNA polymerase sigma factor [Shewanella halifaxensis
HAW-EB4]
gi|167353186|gb|ABZ75799.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella
halifaxensis HAW-EB4]
Length = 321
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 98/155 (63%), Gaps = 7/155 (4%)
Query: 266 TRKLLTAD-EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSEL 323
T KL D +E EL Q+QD ++ + ++L + G P L+ + + S + LK
Sbjct: 21 TNKLTKQDVKEAELEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVYFSRKSLKG-- 77
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAS 383
SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++
Sbjct: 78 --CEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 135
Query: 384 YAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 136 YATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 170
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L +Q L++ K +
Sbjct: 32 DLVRVYLNGIGRTALLTAEDEVELAKRIE---------AGLYAQH-----LLDTKKRLSA 77
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S RDL + G ++R+ L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 78 SKKRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 137
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 138 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 172
>gi|261856530|ref|YP_003263813.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothiobacillus
neapolitanus c2]
gi|261836999|gb|ACX96766.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothiobacillus
neapolitanus c2]
Length = 343
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 42/155 (27%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP+RL+L ET +LLTA+EE +I +A
Sbjct: 69 DPVRLYLRDVETERLLTAEEE-----------------------------VIYSRRA--- 96
Query: 315 SCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
SG+ S+R+K+I NLRLV+ +A++Y RG+ L DL++EG++GLM++VEKF
Sbjct: 97 ---------QSGDESARQKMIVCNLRLVIKIARRYMNRGLDLLDLIEEGNIGLMRAVEKF 147
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P+ G RF++YA WW+RQTI + + SRT+RLPV
Sbjct: 148 DPERGFRFSTYATWWIRQTIERGLMNQSRTVRLPV 182
>gi|427615442|ref|ZP_18943181.1| RNA polymerase sigma factor RpoS, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|414034246|gb|EKT17178.1| RNA polymerase sigma factor RpoS, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
Length = 280
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 82/122 (67%), Gaps = 4/122 (3%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L + + + R L+ ++ +SR ++I +NLRLVV +A++Y RG++L
Sbjct: 63 GEIGYSPLLTAEEEEVYFARRALRGDV----ASRRRMIESNLRLVVKIARRYGNRGLALL 118
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 178
Query: 417 YI 418
Y+
Sbjct: 179 YL 180
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 13/154 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL ++++ E L K
Sbjct: 123 DLVRVYLNGIGRTPLLTAADEVEL-------------SQRIEAGLYAEHLLDSGEKLTRA 169
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 170 RKRDLKVLVREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 229
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 230 YAKGYKFSTYATWWIRQAITRGMADQSRTIRLPV 263
>gi|119774181|ref|YP_926921.1| RNA polymerase sigma-38 factor [Shewanella amazonensis SB2B]
gi|119766681|gb|ABL99251.1| RNA polymerase sigma-38 factor [Shewanella amazonensis SB2B]
Length = 327
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 6/146 (4%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
++ EL Q+QD ++ + ++L S+ G P L+ + + S + L SR +
Sbjct: 36 QDLELEQQVQDDLQRNLDATQLYLSEIGFSP-LLTAEEEVYYS----RKALRGCEKSRNR 90
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQT
Sbjct: 91 MIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 150
Query: 393 IRKAIFQHSRTIRLPVMTFNLSPIYI 418
I +AI +RTIRLP+ +Y+
Sbjct: 151 IERAIMNQTRTIRLPIHVVKELNVYL 176
>gi|67925817|ref|ZP_00519113.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
gi|67852341|gb|EAM47804.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
Length = 386
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 74/101 (73%)
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
K IG+S R+L+ L G ++EK+I ANLRLVV V+K+YQG+G+ DL+ EG++GL+
Sbjct: 2 LGKEIGISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLI 61
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
++VEKF+ G +F++YAY W+RQ + +AI RTIR+PV
Sbjct: 62 RAVEKFEYDKGYKFSTYAYHWIRQALVRAICDKGRTIRVPV 102
>gi|88858314|ref|ZP_01132956.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Pseudoalteromonas tunicata D2]
gi|88819931|gb|EAR29744.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Pseudoalteromonas tunicata D2]
Length = 339
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 94 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 153
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 154 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 189
>gi|269956779|ref|YP_003326568.1| RpoD subfamily RNA polymerase sigma-70 subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269305460|gb|ACZ31010.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Xylanimonas
cellulosilytica DSM 15894]
Length = 549
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 4/154 (2%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
DP++ +L LL A++E EL +I+ + E++ SK + F R + + +
Sbjct: 242 DPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEEKLSKDFADFDRTKADADTRRLV-- 299
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDL+ H G ++ L+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 300 --RDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 357
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +A+ +RTIR+PV
Sbjct: 358 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 391
>gi|336179421|ref|YP_004584796.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334860401|gb|AEH10875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 425
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 75/92 (81%)
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
RDL++ + G++++++L++ANLRLVV VAK+Y GRG++L DL+QEG++GL+++VEKF
Sbjct: 176 RDLQTLVRDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYA 235
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +A+ +RTIR+PV
Sbjct: 236 KGYKFSTYATWWIRQAIGRALADQARTIRIPV 267
>gi|300781025|ref|ZP_07090879.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
gi|300532732|gb|EFK53793.1| RNA polymerase principal sigma factor SigB [Corynebacterium
genitalium ATCC 33030]
Length = 330
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 12/154 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A+EE EL QI+ L +Q + E +A
Sbjct: 31 DLVRVYLNGIGKTALLNAEEEVELAQQIE---------VGLYAQHLLDDPDTELTRA--- 78
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 79 KSRDLKILAKQGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 138
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 139 YSKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 172
>gi|148239078|ref|YP_001224465.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847617|emb|CAK23168.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 308
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 91/144 (63%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR---DLKSELH 324
+LLT ++E + ++Q ++ L E+ L A G +C D K +
Sbjct: 16 QLLTPEQELTMGRKVQAMVSL-TERCHL-------------AGGSGPACEYSDDEKRTIK 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
G ++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++Y
Sbjct: 62 RGEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSNY 121
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|108799144|ref|YP_639341.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MCS]
gi|119868259|ref|YP_938211.1| RNA polymerase sigma factor SigB [Mycobacterium sp. KMS]
gi|126434752|ref|YP_001070443.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JLS]
gi|108769563|gb|ABG08285.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694348|gb|ABL91421.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
gi|126234552|gb|ABN97952.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 319
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLNTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 SRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLTAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|33866043|ref|NP_897602.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639018|emb|CAE08024.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 308
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR---DLKSELH 324
+LLT ++E L ++Q ++ + EP + A G SC + K+ +
Sbjct: 16 QLLTPEQELMLGRKVQAMVVIT------------EPC--QLAGGSGPSCEYSDEEKAVIR 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
G ++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++Y
Sbjct: 62 RGERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|270157097|ref|ZP_06185754.1| RNA polymerase sigma factor RpoS [Legionella longbeachae D-4968]
gi|289164492|ref|YP_003454630.1| RNA polymerase sigma factor RpoS [Legionella longbeachae NSW150]
gi|269989122|gb|EEZ95376.1| RNA polymerase sigma factor RpoS [Legionella longbeachae D-4968]
gi|288857665|emb|CBJ11508.1| RNA polymerase sigma factor RpoS [Legionella longbeachae NSW150]
Length = 341
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+K+I +NLRLVV ++++Y RG+ L DL++EG++GLMKSVEKF P+ G RF+
Sbjct: 97 LKGDVAARKKMIESNLRLVVKISRRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFS 156
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 157 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 192
>gi|307006399|gb|ADN23471.1| RNA polymerase sigma subunit 38 [Dickeya sp. DSMZ 30177]
Length = 264
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ + + + R L+ +L SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 48 GEIGYSP-LLTAEEEVYFARRALRGDL----SSRRRMIESNLRLVVKIARRYNNRGLALL 102
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 103 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 162
Query: 417 YI 418
Y+
Sbjct: 163 YL 164
>gi|410615280|ref|ZP_11326302.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
psychrophila 170]
gi|410165097|dbj|GAC40191.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
psychrophila 170]
Length = 327
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 103/159 (64%), Gaps = 14/159 (8%)
Query: 267 RKLLTADEEFELIAQIQDLIRLEKEKSK-------LQSQFGREPTLIEWAKAIGLSCRDL 319
R+L+ AD++ E Q++D++ +++K K + G P L+ + + S R L
Sbjct: 23 RELVKADKKAE--EQLEDILANKEDKPKNLDVTQLYLGEIGFSP-LLSAEEEVYFSRRAL 79
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K + +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 80 KGD----EASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 135
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 136 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|359444319|ref|ZP_09234111.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20439]
gi|358041816|dbj|GAA70360.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20439]
Length = 323
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 75 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 134
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 135 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 170
>gi|149911458|ref|ZP_01900075.1| sigma S (sigma 38) factor of RNA polymerase, major
sigmafactorduring stationary phase [Moritella sp. PE36]
gi|149805489|gb|EDM65496.1| sigma S (sigma 38) factor of RNA polymerase, major
sigmafactorduring stationary phase [Moritella sp. PE36]
Length = 319
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 73 LRGDASSRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 132
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 133 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 168
>gi|271501815|ref|YP_003334841.1| RpoD subfamily RNA polymerase sigma-70 subunit [Dickeya dadantii
Ech586]
gi|270345370|gb|ACZ78135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dickeya dadantii
Ech586]
Length = 330
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|388456150|ref|ZP_10138445.1| RNA polymerase sigma factor RpoS [Fluoribacter dumoffii Tex-KL]
Length = 339
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+K+I +NLRLVV ++++Y RG+ L DL++EG++GLMKSVEKF P+ G RF+
Sbjct: 95 LKGDVAARKKMIESNLRLVVKISRRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFS 154
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 155 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 190
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSELHSGN 327
LLTA EE L +Q LI +E ++++ + GR T EWA G S + + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+R +++ +N RLV HVA++Y RG+ DLL EG GL + VEKF G +F++YA+W
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLLAEGMSGLWRGVEKFDADRGFKFSTYAHW 128
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
WVRQ I +AI + R +RLPV
Sbjct: 129 WVRQAITRAISEQGRVVRLPV 149
>gi|116492861|ref|YP_804596.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Pediococcus pentosaceus ATCC 25745]
gi|421894229|ref|ZP_16324719.1| RNA polymerase sigma factor RpoD [Pediococcus pentosaceus IE-3]
gi|116103011|gb|ABJ68154.1| RNA polymerase, sigma 70 subunit, RpoD [Pediococcus pentosaceus
ATCC 25745]
gi|385272773|emb|CCG90091.1| RNA polymerase sigma factor RpoD [Pediococcus pentosaceus IE-3]
Length = 379
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 96/185 (51%), Gaps = 46/185 (24%)
Query: 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
K K Q + E + KA K+ NDP+R++L LLTAD+E EL
Sbjct: 83 KALKAQEISKEELDDTKAPAGVKI------NDPVRMYLKEIGRVSLLTADQEVELA---- 132
Query: 284 DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343
+R+EK + +R++L ANLRLVV
Sbjct: 133 --LRIEKGDPR----------------------------------ARQELAEANLRLVVS 156
Query: 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403
+AK+Y GRG+ DL+QEG+MGLMK+VEKF Q G +F++YA WW+RQ I +AI +RT
Sbjct: 157 IAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYQKGFKFSTYATWWIRQAITRAIADQART 216
Query: 404 IRLPV 408
IR+PV
Sbjct: 217 IRIPV 221
>gi|307132339|ref|YP_003884355.1| RNA polymerase sigma-S (sigma 38) factor [Dickeya dadantii 3937]
gi|306529868|gb|ADM99798.1| RNA polymerase, sigma S (sigma 38) factor [Dickeya dadantii 3937]
Length = 330
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|422023667|ref|ZP_16370170.1| sigma S (sigma 38) factor of RNA polymerase [Providencia sneebia
DSM 19967]
gi|414092366|gb|EKT54044.1| sigma S (sigma 38) factor of RNA polymerase [Providencia sneebia
DSM 19967]
Length = 328
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 85/122 (69%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
S+ G P L+ + I + R L+ ++ +SR+++I +NLRLVV ++++Y RG++L
Sbjct: 61 SEIGYSP-LLTAEEEIFYARRALRGDI----ASRQRMIESNLRLVVKISRRYNNRGLALL 115
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ I
Sbjct: 116 DLIEEGNLGLIRAVEKFDPEKGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNI 175
Query: 417 YI 418
Y+
Sbjct: 176 YL 177
>gi|347951534|gb|AEP32903.1| RpoS [Dickeya dadantii]
gi|347951542|gb|AEP32907.1| RpoS [Dickeya paradisiaca]
gi|347951544|gb|AEP32908.1| RpoS [Dickeya zeae]
gi|347951546|gb|AEP32909.1| RpoS [Dickeya zeae]
gi|347951548|gb|AEP32910.1| RpoS [Dickeya zeae]
Length = 280
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 75 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 134
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 135 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 170
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 18/169 (10%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L + F +DP+R++L LLT DEE +L QD+ + K +++ +
Sbjct: 138 LVDSFGIDDPVRMYLKEIGKVNLLTPDEEIQLA---QDMGAGDAAKEQMEE--------L 186
Query: 307 EWAKAIGLSCRD-------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
E A+ G L+ + G +++++L ANLRLVV +AK+Y GRG+ DL+
Sbjct: 187 EQARKNGEEVSLTEEEEKELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLI 246
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 247 QEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 295
>gi|315127432|ref|YP_004069435.1| RNA polymerase subunit RpoD [Pseudoalteromonas sp. SM9913]
gi|359436881|ref|ZP_09226960.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20311]
gi|315015946|gb|ADT69284.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Pseudoalteromonas sp. SM9913]
gi|358028478|dbj|GAA63209.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20311]
Length = 323
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 75 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 134
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 135 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 170
>gi|347951538|gb|AEP32905.1| RpoS [Dickeya dadantii]
Length = 280
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 75 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 134
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 135 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 170
>gi|22124745|ref|NP_668168.1| RNA polymerase sigma factor RpoS [Yersinia pestis KIM10+]
gi|45440189|ref|NP_991728.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Microtus
str. 91001]
gi|108808779|ref|YP_652695.1| RNA polymerase sigma factor RpoS [Yersinia pestis Antiqua]
gi|108810903|ref|YP_646670.1| RNA polymerase sigma factor RpoS [Yersinia pestis Nepal516]
gi|145600262|ref|YP_001164338.1| RNA polymerase sigma factor RpoS [Yersinia pestis Pestoides F]
gi|153997601|ref|ZP_02022701.1| RNA polymerase sigma factor RpoS [Yersinia pestis CA88-4125]
gi|162420853|ref|YP_001605522.1| RNA polymerase sigma factor RpoS [Yersinia pestis Angola]
gi|165925871|ref|ZP_02221703.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936700|ref|ZP_02225267.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Orientalis
str. IP275]
gi|166010016|ref|ZP_02230914.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212931|ref|ZP_02238966.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167398742|ref|ZP_02304266.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421704|ref|ZP_02313457.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423190|ref|ZP_02314943.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218930373|ref|YP_002348248.1| RNA polymerase sigma factor RpoS [Yersinia pestis CO92]
gi|229838982|ref|ZP_04459141.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896462|ref|ZP_04511630.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis
Pestoides A]
gi|229899549|ref|ZP_04514690.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901116|ref|ZP_04516239.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis
Nepal516]
gi|270489294|ref|ZP_06206368.1| RNA polymerase sigma factor RpoS [Yersinia pestis KIM D27]
gi|294505063|ref|YP_003569125.1| RNA polymerase sigma factor [Yersinia pestis Z176003]
gi|384123527|ref|YP_005506147.1| RNA polymerase sigma factor [Yersinia pestis D106004]
gi|384127389|ref|YP_005510003.1| RNA polymerase sigma factor [Yersinia pestis D182038]
gi|384138800|ref|YP_005521502.1| RNA polymerase sigma factor RpoS [Yersinia pestis A1122]
gi|384416046|ref|YP_005625408.1| RNA polymerase sigma factor RpoD [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420618533|ref|ZP_15109038.1| RNA polymerase sigma factor RpoS [Yersinia pestis PY-14]
gi|420704442|ref|ZP_15185638.1| RNA polymerase sigma factor RpoS [Yersinia pestis PY-54]
gi|421764859|ref|ZP_16201647.1| RNA polymerase sigma factor RpoS [Yersinia pestis INS]
gi|21957564|gb|AAM84419.1|AE013686_2 RNA polymerase, sigma S (sigma38) factor [Yersinia pestis KIM10+]
gi|45435045|gb|AAS60605.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Microtus
str. 91001]
gi|108774551|gb|ABG17070.1| RNA polymerase sigma factor RpoS [Yersinia pestis Nepal516]
gi|108780692|gb|ABG14750.1| RNA polymerase sigma factor RpoS [Yersinia pestis Antiqua]
gi|115348984|emb|CAL21944.1| RNA polymerase sigma factor RpoS [Yersinia pestis CO92]
gi|145211958|gb|ABP41365.1| RNA polymerase sigma factor RpoS [Yersinia pestis Pestoides F]
gi|149289238|gb|EDM39318.1| RNA polymerase sigma factor RpoS [Yersinia pestis CA88-4125]
gi|162353668|gb|ABX87616.1| RNA polymerase sigma factor RpoS [Yersinia pestis Angola]
gi|165915349|gb|EDR33959.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922483|gb|EDR39660.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990923|gb|EDR43224.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205718|gb|EDR50198.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960623|gb|EDR56644.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167051246|gb|EDR62654.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057360|gb|EDR67106.1| RNA polymerase sigma factor RpoS [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|224483372|gb|ACN50513.1| RpoS [Yersinia pestis]
gi|229681841|gb|EEO77934.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis
Nepal516]
gi|229687041|gb|EEO79116.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695348|gb|EEO85395.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700536|gb|EEO88567.1| RNA polymerase, sigma S (sigma 38) factor [Yersinia pestis
Pestoides A]
gi|262363123|gb|ACY59844.1| RNA polymerase sigma factor [Yersinia pestis D106004]
gi|262367053|gb|ACY63610.1| RNA polymerase sigma factor [Yersinia pestis D182038]
gi|270337798|gb|EFA48575.1| RNA polymerase sigma factor RpoS [Yersinia pestis KIM D27]
gi|294355522|gb|ADE65863.1| RNA polymerase sigma factor [Yersinia pestis Z176003]
gi|320016550|gb|ADW00122.1| RNA polymerase sigma factor RpoD [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342853929|gb|AEL72482.1| RNA polymerase sigma factor RpoS [Yersinia pestis A1122]
gi|391488067|gb|EIR43943.1| RNA polymerase sigma factor RpoS [Yersinia pestis PY-14]
gi|391571803|gb|EIS19111.1| RNA polymerase sigma factor RpoS [Yersinia pestis PY-54]
gi|411174410|gb|EKS44443.1| RNA polymerase sigma factor RpoS [Yersinia pestis INS]
Length = 332
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 86 LRGDVSSRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 145
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 146 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 181
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETGKRLSA 69
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 ARKRDLAVIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 130 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 164
>gi|347951556|gb|AEP32914.1| RpoS [Dickeya dadantii subsp. dieffenbachiae]
gi|347951558|gb|AEP32915.1| RpoS [Dickeya dadantii subsp. dieffenbachiae]
Length = 280
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 75 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 134
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 135 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 170
>gi|417749572|ref|ZP_12397964.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458794|gb|EGO37751.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 319
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G + LL A E EL +I+ + E L+E K +G
Sbjct: 21 DLVRVYLNGIGKKALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 110/188 (58%), Gaps = 17/188 (9%)
Query: 224 KVSKPQVTNHETYN--SRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQ 281
+V P+ + ET + +R+ ++ L+ +DP+R++L LLTA EE +L +
Sbjct: 62 EVLDPRADSAETSDLLARRRREEEALNAKAPTSDPVRMYLKEIGKVPLLTAAEEVDLAKR 121
Query: 282 IQ-DLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 340
I+ L EK GR T + L DL++ G+ ++ KL+ ANLRL
Sbjct: 122 IEAGLFAAEKLGG------GRRLT-------VALRV-DLEAVARDGDVAKRKLVEANLRL 167
Query: 341 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 400
VV +AK+Y GRG+ DL+QEG++GL+++VEKF G +F++YA WW+RQ I +AI
Sbjct: 168 VVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAIADQ 227
Query: 401 SRTIRLPV 408
+RTIR+PV
Sbjct: 228 ARTIRIPV 235
>gi|14970557|emb|CAC44359.1| RpoS protein [Erwinia chrysanthemi]
Length = 332
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|378717650|ref|YP_005282539.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
gi|375752353|gb|AFA73173.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans VH2]
Length = 339
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 13/174 (7%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T ++R A ++ L D +R++L G LL A++E EL QI+ +
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---------AG 71
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L ++ L + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+
Sbjct: 72 LYAKH----VLATRKRLSAAKKRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 127
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 128 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 181
>gi|392553939|ref|ZP_10301076.1| RNA polymerase subunit RpoD [Pseudoalteromonas undina NCIMB 2128]
Length = 206
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 73/99 (73%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 99 RKSLKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 158
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 159 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 197
>gi|242238323|ref|YP_002986504.1| RNA polymerase sigma factor RpoS [Dickeya dadantii Ech703]
gi|242130380|gb|ACS84682.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dickeya dadantii
Ech703]
Length = 330
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|347951540|gb|AEP32906.1| RpoS [Dickeya dadantii subsp. dieffenbachiae]
Length = 280
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 75 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 134
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 135 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 170
>gi|359767854|ref|ZP_09271636.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
gi|359314770|dbj|GAB24469.1| RNA polymerase sigma factor SigB [Gordonia polyisoprenivorans NBRC
16320]
Length = 339
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 13/174 (7%)
Query: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 294
T ++R A ++ L D +R++L G LL A++E EL QI+ +
Sbjct: 21 TTSTRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---------AG 71
Query: 295 LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS 354
L ++ L + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+
Sbjct: 72 LYAKH----VLATRKRLSAAKKRDLNTVVREGEAARAHLLEANLRLVVSLAKRYTGRGMP 127
Query: 355 LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 128 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 181
>gi|392546986|ref|ZP_10294123.1| RNA polymerase subunit RpoD [Pseudoalteromonas rubra ATCC 29570]
Length = 327
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LRGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|374263825|ref|ZP_09622371.1| hypothetical protein LDG_8832 [Legionella drancourtii LLAP12]
gi|363535668|gb|EHL29116.1| hypothetical protein LDG_8832 [Legionella drancourtii LLAP12]
Length = 342
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+K+I +NLRLVV ++++Y RG+ L DL++EG++GLMKSVEKF P G RF+
Sbjct: 98 LKGDVAARKKMIESNLRLVVKISRRYLNRGLPLLDLIEEGNLGLMKSVEKFDPNRGFRFS 157
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 158 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 193
>gi|172037252|ref|YP_001803753.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|354553864|ref|ZP_08973170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698706|gb|ACB51687.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|353554581|gb|EHC23971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 297
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 23/155 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLI-RLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L LL+ EE +L +IQ ++ LEKE
Sbjct: 8 DTVRHYLQSIGKTPLLSGPEEIKLAEEIQAMLPLLEKE---------------------A 46
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
LS + K + G +R+K+I ANLRLVV +AK+Y G+SL DL+QEGS+GL++ VEKF
Sbjct: 47 LSKEEEKI-VAKGQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKF 105
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
P G +F++YAYWW+RQ I +AI + SRTIRLP+
Sbjct: 106 DPSRGYKFSTYAYWWIRQGITRAIAEQSRTIRLPI 140
>gi|437175954|ref|ZP_20703130.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435156625|gb|ELN43115.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
Length = 331
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 82/122 (67%), Gaps = 4/122 (3%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L + + + R L+ ++ +SR ++I +NLRLVV +A++Y RG++L
Sbjct: 63 GEIGYSPLLTAEEEEVYFARRALRGDV----ASRRRMIESNLRLVVKIARRYGNRGLALL 118
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 178
Query: 417 YI 418
Y+
Sbjct: 179 YL 180
>gi|307006393|gb|ADN23468.1| RNA polymerase sigma subunit 38 [Dickeya sp. JKI4.9.22]
gi|307006395|gb|ADN23469.1| RNA polymerase sigma subunit 38 [Dickeya sp. SR260]
Length = 264
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 69 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 128
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 129 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 164
>gi|429105931|ref|ZP_19167800.1| RNA polymerase sigma factor RpoS [Cronobacter malonaticus 681]
gi|426292654|emb|CCJ93913.1| RNA polymerase sigma factor RpoS [Cronobacter malonaticus 681]
Length = 330
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L S +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRSDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|307006391|gb|ADN23467.1| RNA polymerase sigma subunit 38 [Dickeya sp. JKI4.9.4]
gi|307006403|gb|ADN23473.1| RNA polymerase sigma subunit 38 [Dickeya sp. DSMZ 30179]
Length = 264
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 69 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 128
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 129 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 164
>gi|238761664|ref|ZP_04622639.1| RNA polymerase sigma factor rpoS [Yersinia kristensenii ATCC 33638]
gi|238700178|gb|EEP92920.1| RNA polymerase sigma factor rpoS [Yersinia kristensenii ATCC 33638]
Length = 332
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 86 LRGDVSSRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 145
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 146 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 181
>gi|82545186|ref|YP_409133.1| RNA polymerase sigma factor RpoS [Shigella boydii Sb227]
gi|417683646|ref|ZP_12332993.1| RNA polymerase sigma factor RpoS [Shigella boydii 3594-74]
gi|81246597|gb|ABB67305.1| RNA polymerase sigma S factor [Shigella boydii Sb227]
gi|332092174|gb|EGI97252.1| RNA polymerase sigma factor RpoS [Shigella boydii 3594-74]
Length = 331
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 82/122 (67%), Gaps = 4/122 (3%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L + + + R L+ ++ +SR ++I +NLRLVV +A++Y RG++L
Sbjct: 63 GEIGYSPLLTAEEEEVYFARRALRGDV----ASRRRMIESNLRLVVKIARRYGNRGLALL 118
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 178
Query: 417 YI 418
Y+
Sbjct: 179 YL 180
>gi|347951564|gb|AEP32918.1| RpoS [Dickeya paradisiaca]
Length = 280
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 75 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 134
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 135 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 170
>gi|347951554|gb|AEP32913.1| RpoS [Erwinia chrysanthemi]
Length = 280
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ + + + R L+ +L SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 54 GEIGYSP-LLTAEEEVYFARRALRGDL----SSRRRMIESNLRLVVKIARRYNNRGLALL 108
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 109 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 168
Query: 417 YI 418
Y+
Sbjct: 169 YL 170
>gi|347951550|gb|AEP32911.1| RpoS [Erwinia chrysanthemi]
Length = 280
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ + + + R L+ +L SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 54 GEIGYSP-LLTAEEEVYFARRALRGDL----SSRRRMIESNLRLVVKIARRYNNRGLALL 108
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 109 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 168
Query: 417 YI 418
Y+
Sbjct: 169 YL 170
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 9/155 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA +E +L +I+ + + +KL++ E IE +A
Sbjct: 139 GDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGL---EASNKLEAADAGE---IELTRA-- 190
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G +++ LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 191 -EMRRLTRVEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 249
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 250 DYEKGFKFSTYATWWIRQAITRAIADQARTIRIPV 284
>gi|332532870|ref|ZP_08408743.1| RNA polymerase sigma factor RpoS [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037716|gb|EGI74167.1| RNA polymerase sigma factor RpoS [Pseudoalteromonas haloplanktis
ANT/505]
Length = 324
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 73/99 (73%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 73 RKSLRGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 132
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 133 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|407791031|ref|ZP_11138120.1| RpoD family RNA polymerase sigma factor [Gallaecimonas xiamenensis
3-C-1]
gi|407201674|gb|EKE71671.1| RpoD family RNA polymerase sigma factor [Gallaecimonas xiamenensis
3-C-1]
Length = 322
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 76 LRGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 135
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 136 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|159896899|ref|YP_001543146.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889938|gb|ABX03018.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 391
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 93/154 (60%), Gaps = 13/154 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D ++++L +LLTA+EE L QI+ K + +LQ++ W + L
Sbjct: 93 DSVQMYLREIGEVELLTAEEEITLAKQIETG---RKAEHQLQTE-----QYATWDERTAL 144
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R + GN R KL ANLRLVV VAK+Y G +S DL+QEG++GLM++VEKF
Sbjct: 145 ERR-----VDFGNEGRRKLTQANLRLVVSVAKKYIGNHMSFMDLIQEGNIGLMRAVEKFD 199
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ G RF++YA WW+RQ + +AI + SRTIRLPV
Sbjct: 200 YRKGNRFSTYATWWIRQAVTRAIAEQSRTIRLPV 233
>gi|347951552|gb|AEP32912.1| RpoS [Erwinia chrysanthemi]
Length = 280
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ + + + R L+ +L SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 54 GEIGYSP-LLTAEEEVYFARRALRGDL----SSRRRMIESNLRLVVKIARRYNNRGLALL 108
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 109 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 168
Query: 417 YI 418
Y+
Sbjct: 169 YL 170
>gi|336450643|ref|ZP_08621090.1| RNA polymerase sigma factor RpoS [Idiomarina sp. A28L]
gi|336282466|gb|EGN75698.1| RNA polymerase sigma factor RpoS [Idiomarina sp. A28L]
Length = 331
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LKGDAKARQRMIESNLRLVVKIARRYHNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYL 179
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 96/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +
Sbjct: 182 RIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAP 241
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++ + +RE L +N RLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 242 ELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASR 301
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +SR+ RLP
Sbjct: 302 GFRISTYVYWWIRQGVSRALADNSRSFRLP 331
>gi|15807631|ref|NP_294640.1| RNA polymerase sigma-A factor [Deinococcus radiodurans R1]
Length = 360
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 95/155 (61%), Gaps = 13/155 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
NDP+R +L LLT +EE L +I+ E + + Q + +L + ++
Sbjct: 58 NDPVRQYLHEIGRVSLLTLEEEIALARRIE-------EGEEARKQLEEDESLDDRSR--- 107
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L ++ G ++R+ LI ANLRLVV +AK+Y GRG+ DL+QEG+ GL+++VEKF
Sbjct: 108 ---RRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKF 164
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ + +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 165 EYRRRYKFSTYATWWIRQAINRAIADQARTIRIPV 199
>gi|56750962|ref|YP_171663.1| group2 RNA polymerase sigma factor RpoD4 [Synechococcus elongatus
PCC 6301]
gi|81299380|ref|YP_399588.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Synechococcus elongatus PCC 7942]
gi|123769297|sp|Q31QR8.1|RPOD4_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD4
gi|56685921|dbj|BAD79143.1| group2 RNA polymerase sigma factor RpoD4 [Synechococcus elongatus
PCC 6301]
gi|81168261|gb|ABB56601.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
[Synechococcus elongatus PCC 7942]
Length = 311
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 91/140 (65%), Gaps = 19/140 (13%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLTA+EE EL ++Q ++ L+E A S + ++ L +G
Sbjct: 33 LLTAEEEVELSRKVQLMM-----------------ALLENPDAESNS--ENQAVLQAGQR 73
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K++ ANLRLVV VAK+YQ +G+ L DL+QEGS+GL ++VEKF P G +F++YAYWW
Sbjct: 74 AKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWW 133
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ++ +AI H+RTIRLP+
Sbjct: 134 IRQSMTRAIDNHARTIRLPI 153
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 18/169 (10%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L + F +DP+R++L LLT DEE +L QD+ + K +++ +
Sbjct: 133 LVDSFGIDDPVRMYLKEIGKVNLLTPDEEVQLA---QDMGAGDAAKEQMEE--------L 181
Query: 307 EWAKAIGLSCRD-------LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359
E A+ G L+ + G +++++L ANLRLVV +AK+Y GRG+ DL+
Sbjct: 182 EQARKNGEEVSITEEEEKELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLI 241
Query: 360 QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
QEG++GL+K+VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 242 QEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 290
>gi|212555697|gb|ACJ28151.1| RNA polymerase sigma-38 factor [Shewanella piezotolerans WP3]
Length = 322
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 95/148 (64%), Gaps = 6/148 (4%)
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
A +E EL Q+QD ++ + ++L + G P L+ + + S + LK SR
Sbjct: 29 AVKEAELEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVFFSRKSLKG----CEKSR 83
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+R
Sbjct: 84 NRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 143
Query: 391 QTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
QTI +AI +RTIRLP+ +Y+
Sbjct: 144 QTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|212711364|ref|ZP_03319492.1| hypothetical protein PROVALCAL_02436 [Providencia alcalifaciens DSM
30120]
gi|422017061|ref|ZP_16363630.1| sigma S (sigma 38) factor of RNA polymerase [Providencia
alcalifaciens Dmel2]
gi|212686093|gb|EEB45621.1| hypothetical protein PROVALCAL_02436 [Providencia alcalifaciens DSM
30120]
gi|414105969|gb|EKT67522.1| sigma S (sigma 38) factor of RNA polymerase [Providencia
alcalifaciens Dmel2]
Length = 328
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGDVASRQRMIESNLRLVVKISRRYNNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNIYL 177
>gi|307006397|gb|ADN23470.1| RNA polymerase sigma subunit 38 [Dickeya sp. DSMZ 4610]
Length = 264
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ + + + R L+ +L SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 48 GEIGYSP-LLTAEEEVYFARRALRGDL----SSRRRMIESNLRLVVKIARRYNNRGLALL 102
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 103 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 162
Query: 417 YI 418
Y+
Sbjct: 163 YL 164
>gi|363899334|ref|ZP_09325843.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|395208255|ref|ZP_10397496.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
gi|361958374|gb|EHL11673.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|394705836|gb|EJF13360.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
Length = 385
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 91/162 (56%), Gaps = 40/162 (24%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLI 306
L EG DP+R++L T LLTA+EE+ L ++ Q G E
Sbjct: 106 LLEGIGTEDPVRMYLKEIGTVPLLTAEEEYSL---------------AMKKQEGDE---- 146
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
+AK ++LI ANLRLVV +AK+Y GRG+S DL+QEG++GL
Sbjct: 147 -YAK--------------------QRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGL 185
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+K VEKF P+ G + ++YA WW+RQ++ +A+ +RTIR+PV
Sbjct: 186 IKGVEKFDPEKGFKLSTYATWWIRQSVTRALADQARTIRVPV 227
>gi|251788478|ref|YP_003003199.1| RNA polymerase sigma factor RpoS [Dickeya zeae Ech1591]
gi|247537099|gb|ACT05720.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dickeya zeae
Ech1591]
Length = 330
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ + + + R L+ +L SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 63 GEIGYSP-LLTAEEEVYFARRALRGDL----SSRRRMIESNLRLVVKIARRYNNRGLALL 117
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 177
Query: 417 YI 418
Y+
Sbjct: 178 YL 179
>gi|261345855|ref|ZP_05973499.1| RNA polymerase sigma factor RpoS [Providencia rustigianii DSM 4541]
gi|282566345|gb|EFB71880.1| RNA polymerase sigma factor RpoS [Providencia rustigianii DSM 4541]
Length = 328
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGDIASRQRMIESNLRLVVKISRRYNNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNIYL 177
>gi|334715357|gb|AEG90711.1| RNA polymerase subunit sigma 38, partial [Pectobacterium
carotovorum subsp. brasiliense]
Length = 283
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 64 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 123
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 124 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 159
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETGKRLSA 69
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 TRKRDLALIVREGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 130 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 164
>gi|183600216|ref|ZP_02961709.1| hypothetical protein PROSTU_03759 [Providencia stuartii ATCC 25827]
gi|386742508|ref|YP_006215687.1| sigma S (sigma 38) factor of RNA polymerase [Providencia stuartii
MRSN 2154]
gi|188022512|gb|EDU60552.1| RNA polymerase sigma factor RpoS [Providencia stuartii ATCC 25827]
gi|384479201|gb|AFH92996.1| sigma S (sigma 38) factor of RNA polymerase [Providencia stuartii
MRSN 2154]
Length = 328
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGDVASRQRMIESNLRLVVKISRRYNNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNIYL 177
>gi|119468990|ref|ZP_01612015.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonadales bacterium TW-7]
gi|359448118|ref|ZP_09237670.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20480]
gi|392536868|ref|ZP_10284005.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Pseudoalteromonas marina mano4]
gi|119447642|gb|EAW28909.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonadales bacterium TW-7]
gi|358046093|dbj|GAA73919.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20480]
Length = 324
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 76 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 135
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 136 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|392534917|ref|ZP_10282054.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Pseudoalteromonas arctica A
37-1-2]
Length = 324
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 73/99 (73%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 73 RKSLRGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 132
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 133 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|120403441|ref|YP_953270.1| RNA polymerase sigma factor SigB [Mycobacterium vanbaalenii PYR-1]
gi|119956259|gb|ABM13264.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 329
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 31 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTRKRLGE 76
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 77 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 137 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|77359643|ref|YP_339218.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Pseudoalteromonas haloplanktis
TAC125]
gi|76874554|emb|CAI85775.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Pseudoalteromonas haloplanktis
TAC125]
Length = 324
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 73/99 (73%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 73 RKSLKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 132
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 133 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|359442482|ref|ZP_09232349.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20429]
gi|358035681|dbj|GAA68598.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20429]
Length = 324
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 73/99 (73%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 73 RKSLRGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 132
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 133 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|334715355|gb|AEG90710.1| RNA polymerase subunit sigma 38, partial [Pectobacterium
carotovorum subsp. brasiliense]
Length = 283
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 64 LRGDVSSRRRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 123
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 124 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 159
>gi|392308030|ref|ZP_10270564.1| RNA polymerase subunit RpoD [Pseudoalteromonas citrea NCIMB 1889]
Length = 326
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A EE EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLDAAEEVELAKRIE---------AGLYAQH-----LLKTKKRLGQ 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLEAIVRDGEEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|318041996|ref|ZP_07973952.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0101]
Length = 318
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC--RDL-KSELH 324
+LLT ++E L ++Q ++ L + A +G +C D+ K +
Sbjct: 25 QLLTPEQELMLGRKVQAMVALHERCHS--------------AGGVGEACSYNDIEKRTMR 70
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
G +++++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++Y
Sbjct: 71 VGERAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 130
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 131 AYWWIRQGLNRALSTQSRTIRIPV 154
>gi|359434260|ref|ZP_09224537.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20652]
gi|357919075|dbj|GAA60786.1| RNA polymerase nonessential primary-like sigma factor
[Pseudoalteromonas sp. BSi20652]
Length = 324
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 73/99 (73%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+ L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G
Sbjct: 73 RKSLRGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGF 132
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 133 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 17/168 (10%)
Query: 245 KKLSEGFDRNDP----LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG 300
++L E D P +R++L G LLTA++E L I+ + E + + G
Sbjct: 36 ERLQEDLDTQSPAADLVRVYLNGIGRTALLTAEDEVTLAKSIEAGLYAEH---LINTSEG 92
Query: 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360
P R+LK+ + G ++R L+ ANLRLVV +AK+Y GRGI L DL+Q
Sbjct: 93 LTPQ----------RRRELKAVVRDGRAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQ 142
Query: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
EG++GL++++EKF G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 143 EGNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITRGVADQSRTIRLPV 190
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 12/155 (7%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+DP+R++L LLTA+EE +L +I+ F E K
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE------------AGLFASEKLAAATRKTSP 139
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
RDL++ G ++ KL+ ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 140 QMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 199
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ + +AI +RTIR+PV
Sbjct: 200 DYTKGYKFSTYATWWIRQAVTRAIADQARTIRIPV 234
>gi|87118598|ref|ZP_01074497.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Marinomonas sp. MED121]
gi|86166232|gb|EAQ67498.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Marinomonas sp. MED121]
Length = 330
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR+++I +NLRLVV ++++Y RG+SL DL++EG++GL+++VEKF P+ G RF+
Sbjct: 81 LKGDESSRKRMIESNLRLVVKISRRYLNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFS 140
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 141 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 176
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q+ L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQY-----LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R+L + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRELAMVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|148264661|ref|YP_001231367.1| RpoD family RNA polymerase sigma factor [Geobacter uraniireducens
Rf4]
gi|146398161|gb|ABQ26794.1| RNA polymerase, sigma 38 subunit, RpoS [Geobacter uraniireducens
Rf4]
Length = 336
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 40/155 (25%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
+D ++L+L + KLLTADEE EL A+I
Sbjct: 60 DDAIKLYLREIQKTKLLTADEEKELAARID------------------------------ 89
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
K E ++R+K+I +NLRLVV +AK+Y RG+ DL++EG+MGL+K+VE+F
Sbjct: 90 ------KGE----KAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERF 139
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
K CRF++YA WW+RQ+I +A+ SRTIRLPV
Sbjct: 140 KLSKECRFSTYATWWIRQSIERALVNQSRTIRLPV 174
>gi|294141938|ref|YP_003557916.1| RNA polymerase sigma-38 factor [Shewanella violacea DSS12]
gi|293328407|dbj|BAJ03138.1| RNA polymerase sigma-38 factor [Shewanella violacea DSS12]
Length = 328
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 94/146 (64%), Gaps = 6/146 (4%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
+E EL Q+QD ++ + ++L + G P L+ + + S + LK SR +
Sbjct: 37 QEAELEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVYFSRKSLKG----CGKSRNR 91
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQT
Sbjct: 92 MIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 151
Query: 393 IRKAIFQHSRTIRLPVMTFNLSPIYI 418
I +AI +RTIRLP+ +Y+
Sbjct: 152 IERAIMNQTRTIRLPIHVVKELNVYL 177
>gi|90020900|ref|YP_526727.1| RNA polymerase sigma factor RpoS [Saccharophagus degradans 2-40]
gi|89950500|gb|ABD80515.1| RNA polymerase sigma factor RpoS [Saccharophagus degradans 2-40]
Length = 333
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 86 LKGCEASRKRMIESNLRLVVKIARRYVNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 145
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 146 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 181
>gi|163847594|ref|YP_001635638.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222525449|ref|YP_002569920.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163668883|gb|ABY35249.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222449328|gb|ACM53594.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 345
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 19/143 (13%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD---LKSELHS 325
LLTA EE EL +I+ ++ ++Q A A L+ R+ L +
Sbjct: 61 LLTAAEEIELAERIE-------RGNEAEAQL---------ATATDLTPRERYELLQAVQQ 104
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +R LI ANLRLVV +AK+Y GRG++L DL+QEG++GLM++VEKF G RF++YA
Sbjct: 105 GEEARRHLIQANLRLVVSIAKKYVGRGLALLDLIQEGNIGLMRAVEKFDYHKGNRFSTYA 164
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
WW+RQ + +AI + RTIRLPV
Sbjct: 165 TWWIRQAVTRAIAEQGRTIRLPV 187
>gi|163749990|ref|ZP_02157234.1| RNA polymerase sigma-38 factor [Shewanella benthica KT99]
gi|161330264|gb|EDQ01245.1| RNA polymerase sigma-38 factor [Shewanella benthica KT99]
Length = 323
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 94/146 (64%), Gaps = 6/146 (4%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
+E EL Q+QD ++ + ++L + G P L+ + + S + LK SR +
Sbjct: 32 QEAELEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVYFSRKSLKG----CGKSRNR 86
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQT
Sbjct: 87 MIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 146
Query: 393 IRKAIFQHSRTIRLPVMTFNLSPIYI 418
I +AI +RTIRLP+ +Y+
Sbjct: 147 IERAIMNQTRTIRLPIHVVKELNVYL 172
>gi|227504896|ref|ZP_03934945.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
gi|227198489|gb|EEI78537.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
Length = 337
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 14/175 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL+A++E EL +I+ L +++ L K
Sbjct: 39 DLVRVYLNGIGKTALLSAEDEVELAQRIE---------VGLYAEY----KLANAEKITRA 85
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 86 EKRDLKILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 145
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYVFSSLN 428
G +F++YA WW+RQ I + + SRTIRLPV + ++ + K ++ SL
Sbjct: 146 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLG 200
>gi|268591356|ref|ZP_06125577.1| RNA polymerase sigma factor RpoS [Providencia rettgeri DSM 1131]
gi|291313333|gb|EFE53786.1| RNA polymerase sigma factor RpoS [Providencia rettgeri DSM 1131]
Length = 328
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGDIASRQRMIESNLRLVVKISRRYNNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNIYL 177
>gi|87302558|ref|ZP_01085375.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
gi|87282902|gb|EAQ74859.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
Length = 307
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 94/144 (65%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC--RDL-KSELH 324
+LLT +E L ++Q ++ L E+ L A G +C D+ + +
Sbjct: 16 QLLTPTQELTLGRKVQAMVAL-NERCAL-------------AGGNGEACDYNDVERRTIR 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
+G +++++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL+++VEK+ P G RF++Y
Sbjct: 62 TGERAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLVRAVEKYDPTRGHRFSTY 121
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|442608745|ref|ZP_21023492.1| RNA polymerase sigma factor RpoS [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441750141|emb|CCQ09554.1| RNA polymerase sigma factor RpoS [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 343
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 96 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 155
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 156 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 191
>gi|299115565|emb|CBN75768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ectocarpus
siliculosus]
Length = 244
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 88/128 (68%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
KLLT EE+EL +IQ L+ + +L + GR PT EWA++ ++ +L+ L G
Sbjct: 21 KLLTRAEEYELGTKIQTLMGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVGG 80
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++++ ++ AN+R+V+ +A++YQ G+ L DL+QEGS+GL+++VEKF P+ G + ++Y+ W
Sbjct: 81 AAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAW 140
Query: 388 WVRQTIRK 395
W++Q I K
Sbjct: 141 WIQQAIFK 148
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 59/238 (24%)
Query: 225 VSKPQVTNHETYNSRK--ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 282
++P N + SR+ S KK +E D +R++L +LL A+EE EL +I
Sbjct: 37 TTEPDGKNRKISASRRRDTSKKKPYTE-----DSIRVYLQEIGRIRLLRAEEEIELARKI 91
Query: 283 QDLIRLEKEKSKL-----------------------------QSQFGREPTLIEWAKAIG 313
DL++LE+ + L QS +EP +W++
Sbjct: 92 ADLLQLERIREALWEELDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEP---KWSEVTS 148
Query: 314 L-----SCRDL---------------KSELHSGNSSREKLINANLRLVVHVAKQYQGRGI 353
L + +L K L+ G +++K++++NLRLVV +AK+Y RG+
Sbjct: 149 LLQEKKTISNLEKIWELEQKSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGL 208
Query: 354 SLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTF 411
S DL+QEGS+GL+++ EKF + G +F++YA WW+RQ I +AI SRTIRLPV +
Sbjct: 209 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 266
>gi|422009817|ref|ZP_16356800.1| sigma S (sigma 38) factor of RNA polymerase [Providencia rettgeri
Dmel1]
gi|414093635|gb|EKT55307.1| sigma S (sigma 38) factor of RNA polymerase [Providencia rettgeri
Dmel1]
Length = 328
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGDIASRQRMIESNLRLVVKISRRYNNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNIYL 177
>gi|148657222|ref|YP_001277427.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148569332|gb|ABQ91477.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 349
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 69/90 (76%)
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
L ++ +G +R LI ANLRLVV +AK+Y GRG+SL DL+QEG++GLM++VEKF + G
Sbjct: 102 LLDDVAAGQEARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAVEKFDHRKG 161
Query: 379 CRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
RF++YA WW+RQ + +AI + RTIRLPV
Sbjct: 162 NRFSTYATWWIRQAVTRAIAEQGRTIRLPV 191
>gi|124023525|ref|YP_001017832.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. MIT 9303]
gi|123963811|gb|ABM78567.1| Putative type II alternative sigma factor, sigma70 family protein
[Prochlorococcus marinus str. MIT 9303]
Length = 308
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E + ++Q ++ L ++ L G E E++ D + + G
Sbjct: 16 QLLTPEQELTMGRKVQAMVAL-TDRCHLAGGAGPE---CEYSD-------DQRLTIRRGE 64
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++YAYW
Sbjct: 65 KAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYW 124
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 125 WIRQGLNRALSTQSRTIRIPV 145
>gi|157961021|ref|YP_001501055.1| RpoD family RNA polymerase sigma factor [Shewanella pealeana ATCC
700345]
gi|157846021|gb|ABV86520.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella pealeana
ATCC 700345]
Length = 322
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 94/146 (64%), Gaps = 6/146 (4%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
+E EL Q+QD ++ + ++L + G P L+ + + S + LK SR +
Sbjct: 31 KEAELEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVYFSRKSLKG----CEKSRNR 85
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392
+I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQT
Sbjct: 86 MIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT 145
Query: 393 IRKAIFQHSRTIRLPVMTFNLSPIYI 418
I +AI +RTIRLP+ +Y+
Sbjct: 146 IERAIMNQTRTIRLPIHVVKELNVYL 171
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L++ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLDTRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|420749403|ref|ZP_15225268.1| RNA polymerase sigma factor RpoS [Yersinia pestis PY-65]
gi|391632709|gb|EIS72204.1| RNA polymerase sigma factor RpoS [Yersinia pestis PY-65]
Length = 332
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SSR ++I +NLRLVV +A+ Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 86 LRGDVSSRRRMIESNLRLVVKIARSYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 145
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 146 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 181
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 19/157 (12%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE---KEKSKLQSQFGREPTLIEWAKA 311
D +R++L G LLTA +E EL I+ + E K L Q RE
Sbjct: 79 DLVRVYLNGIGRTALLTAADEVELAKSIEAGLYAEHLLKTSDNLTPQRRRE--------- 129
Query: 312 IGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371
LK+ G ++R L+ ANLRLVV +AK+Y GRGI L DL+QEG++GL++++E
Sbjct: 130 -------LKTVARDGQAARTHLLEANLRLVVSLAKRYTGRGIPLLDLIQEGNLGLIRAME 182
Query: 372 KFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
KF G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 183 KFDYAKGFKFSTYATWWIRQAITRGVADQSRTIRLPV 219
>gi|127512145|ref|YP_001093342.1| RpoD family RNA polymerase sigma factor [Shewanella loihica PV-4]
gi|126637440|gb|ABO23083.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella loihica
PV-4]
Length = 324
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 93/143 (65%), Gaps = 6/143 (4%)
Query: 277 ELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLIN 335
EL Q+QD ++ + ++L S+ G P L+ + + S + LK SR ++I
Sbjct: 36 ELEQQVQDDLQKNLDATQLYLSEIGFSP-LLSAEEEVYFSRKALKG----CEKSRNRMIE 90
Query: 336 ANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395
+NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +
Sbjct: 91 SNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER 150
Query: 396 AIFQHSRTIRLPVMTFNLSPIYI 418
AI +RTIRLP+ +Y+
Sbjct: 151 AIMNQTRTIRLPIHVVKELNVYL 173
>gi|374853415|dbj|BAL56324.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
gi|374857281|dbj|BAL60134.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
Length = 334
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Query: 318 DLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
+L S + +G +R++LI ANLRLVV +AK+Y GRG+S DL+QEG++GLM++VEKF P
Sbjct: 79 ELASRVVAGEKCARDELITANLRLVVSIAKKYMGRGLSFLDLIQEGNLGLMRAVEKFDPT 138
Query: 377 AGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI SRTIR+PV
Sbjct: 139 KGFKFSTYATWWIRQAITRAIADQSRTIRIPV 170
>gi|334715365|gb|AEG90715.1| RNA polymerase subunit sigma 38, partial [Pectobacterium
carotovorum subsp. brasiliense]
Length = 284
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L + + + R L+ ++ SR ++I +NLRLVV +A++Y RG++L
Sbjct: 43 GEIGYSPLLTAEEEEVYFARRALRGDV----PSRRRMIESNLRLVVKIARRYNNRGLALL 98
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 99 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 158
Query: 417 YI 418
Y+
Sbjct: 159 YL 160
>gi|126660003|ref|ZP_01731125.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126618681|gb|EAZ89428.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 297
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 66/83 (79%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYA 385
G +R+K+I ANLRLVV +AK+Y G+SL DL+QEGS+GL++ VEKF P G +F++YA
Sbjct: 58 GQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYA 117
Query: 386 YWWVRQTIRKAIFQHSRTIRLPV 408
YWW+RQ I +AI + SRTIRLP+
Sbjct: 118 YWWIRQGITRAIAEQSRTIRLPI 140
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLNTKKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLATVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|319948428|ref|ZP_08022566.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
gi|319437910|gb|EFV92892.1| RNA polymerase sigma factor SigB [Dietzia cinnamea P4]
Length = 322
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 98/155 (63%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL +I+ + L ++ L+E K +G
Sbjct: 24 DLVRVYLNGIGKTALLNAEDEVELSKRIE---------AGLYAKH-----LLETKKRLGP 69
Query: 315 SCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + DLK+ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 AKKADLKTIVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 130 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 164
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 9/155 (5%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
DP+R++L LLTA EE L +++E + Q E LIE +A
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVHL------AMKIEAGTAASQKLEDFEDGLIELNRA-- 202
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
R L G ++++LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL+++VEKF
Sbjct: 203 -EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 261
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 262 DYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 296
>gi|399018036|ref|ZP_10720222.1| RNA polymerase sigma factor RpoS [Herbaspirillum sp. CF444]
gi|398102001|gb|EJL92193.1| RNA polymerase sigma factor RpoS [Herbaspirillum sp. CF444]
Length = 341
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 75/97 (77%), Gaps = 1/97 (1%)
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
+SR+K+I NLRLVV +AK Y RG++L DL++EG++GLM++++KF+P+ G RF++YA W
Sbjct: 100 ASRQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTYATW 159
Query: 388 WVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYV 423
W+RQ+I +AI +RT+RLPV M L+ I K+++
Sbjct: 160 WIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHL 196
>gi|332308186|ref|YP_004436037.1| RpoD subfamily RNA polymerase sigma-70 subunit [Glaciecola sp.
4H-3-7+YE-5]
gi|410640102|ref|ZP_11350644.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
chathamensis S18K6]
gi|332175515|gb|AEE24769.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Glaciecola sp.
4H-3-7+YE-5]
gi|410140350|dbj|GAC08831.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
chathamensis S18K6]
Length = 327
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGDEASRQRMIVSNLRLVVKIARRYNNRGLALLDLVEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|410629061|ref|ZP_11339774.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
mesophila KMM 241]
gi|410151325|dbj|GAC26543.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
mesophila KMM 241]
Length = 327
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGDEASRQRMIVSNLRLVVKIARRYNNRGLALLDLVEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|41408924|ref|NP_961760.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397283|gb|AAS05143.1| SigB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 332
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 34 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 79
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 80 NRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 139
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 140 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 174
>gi|385678070|ref|ZP_10051998.1| RNA polymerase sigma factor SigB [Amycolatopsis sp. ATCC 39116]
Length = 306
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 15/159 (9%)
Query: 251 FDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
F+ DP+R +L G LLT +EE L +I+ + L +Q L+ +
Sbjct: 6 FEPADPVRAYLTGISRAGLLTIEEEVTLAKRIE---------AGLYAQH-----LLATTR 51
Query: 311 AIGLSCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
+ R DL + G ++ +L+ ANLRLVV +AK+Y GRG+SL DL+QEG++GL+++
Sbjct: 52 VLDPQRRADLLTIAEEGREAKNRLLEANLRLVVSIAKRYTGRGMSLLDLIQEGNLGLIRA 111
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
VEK+ G +F++YA WW+RQ I +A+ SRTIR+PV
Sbjct: 112 VEKYDYTPGFKFSTYATWWIRQAISRALADQSRTIRIPV 150
>gi|87303841|ref|ZP_01086550.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87281651|gb|EAQ73647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 215
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 69/86 (80%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L G ++E+++ ANLRLVV VAK+YQG+G+ L DL+QEGS+GL ++VEKF P G +F+
Sbjct: 25 LRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGYKFS 84
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPV 408
+YA+WW+RQ++ +AI SRTIRLPV
Sbjct: 85 TYAFWWIRQSMTRAIACQSRTIRLPV 110
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 23/161 (14%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLIE 307
D +R +L LL A+EE EL +I Q L + ++ K+ +Q R+ ++
Sbjct: 170 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAEMTEKGEKIPTQLRRD---MQ 226
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
W CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+
Sbjct: 227 WI------CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLI 273
Query: 368 KSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
++VEKF G +F++YA WW+RQ I +A+ +RTIR+PV
Sbjct: 274 RAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 314
>gi|109900163|ref|YP_663418.1| RNA polymerase subunit sigma 28 [Pseudoalteromonas atlantica T6c]
gi|109702444|gb|ABG42364.1| RNA polymerase, sigma 38 subunit, RpoS [Pseudoalteromonas atlantica
T6c]
Length = 327
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGDEASRQRMIVSNLRLVVKIARRYNNRGLALLDLVEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|406595462|ref|YP_006746592.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii ATCC
27126]
gi|406372783|gb|AFS36038.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii ATCC
27126]
Length = 330
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 177
>gi|449326050|gb|AGE92651.1| truncted RpoS [Cronobacter sakazakii]
Length = 271
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|383936561|ref|ZP_09989985.1| RNA polymerase nonessential primary-like sigma factor [Rheinheimera
nanhaiensis E407-8]
gi|383702343|dbj|GAB60076.1| RNA polymerase nonessential primary-like sigma factor [Rheinheimera
nanhaiensis E407-8]
Length = 329
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 83 LKGDQAARKRMIESNLRLVVKIARRYINRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 142
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 143 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYL 178
>gi|336312354|ref|ZP_08567304.1| RNA polymerase sigma factor RpoS [Shewanella sp. HN-41]
gi|335864083|gb|EGM69197.1| RNA polymerase sigma factor RpoS [Shewanella sp. HN-41]
Length = 326
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|407686322|ref|YP_006801495.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407289702|gb|AFT94014.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 330
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 177
>gi|397169652|ref|ZP_10493084.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alishewanella aestuarii B11]
gi|396088956|gb|EJI86534.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alishewanella aestuarii B11]
Length = 331
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 85 LKGDQAARKRMIESNLRLVVKIARRYINRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 144
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 145 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYL 180
>gi|336314953|ref|ZP_08569867.1| RNA polymerase sigma factor RpoS [Rheinheimera sp. A13L]
gi|335880780|gb|EGM78665.1| RNA polymerase sigma factor RpoS [Rheinheimera sp. A13L]
Length = 332
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 86 LKGDKAARKRMIESNLRLVVKIARRYINRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 145
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 146 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYL 181
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 95/162 (58%), Gaps = 23/162 (14%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFEL-------IAQIQDLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE +L +A +++L + E E +L+ + R I
Sbjct: 105 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELEKAEDEGIELERREKRRLGRI 164
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
E G ++++LI ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 165 E----------------QVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 208
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+++VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 209 IRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 250
>gi|332140079|ref|YP_004425817.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Deep ecotype']
gi|332143123|ref|YP_004428861.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Deep ecotype']
gi|410860246|ref|YP_006975480.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii AltDE1]
gi|327550101|gb|AEA96819.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Deep ecotype']
gi|327553145|gb|AEA99863.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Deep ecotype']
gi|410817508|gb|AFV84125.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii AltDE1]
Length = 330
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 177
>gi|451944386|ref|YP_007465022.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903773|gb|AGF72660.1| RNA polymerase sigma factor SigB [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 329
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 12/154 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA++E EL +I+ + L + S+ EP + AK
Sbjct: 30 DLVRVYLNGIGKTALLTAEDEVELAQRIE--VGLYADYLLKNSE---EP--LTRAKK--- 79
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK GN +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 80 --RDLKVLAKEGNKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 138 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|91792562|ref|YP_562213.1| RNA polymerase sigma factor RpoS [Shewanella denitrificans OS217]
gi|91714564|gb|ABE54490.1| RNA polymerase sigma factor RpoS [Shewanella denitrificans OS217]
Length = 327
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 81 LKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 140
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 141 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 176
>gi|392552376|ref|ZP_10299513.1| RNA polymerase subunit RpoD [Pseudoalteromonas spongiae
UST010723-006]
Length = 318
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 72 LRGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 131
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 132 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 167
>gi|366089209|ref|ZP_09455682.1| RNA polymerase sigma factor RpoD [Lactobacillus acidipiscis KCTC
13900]
Length = 373
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 40/159 (25%)
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWA 309
G NDP+R++L LLTADEE L +I+
Sbjct: 97 GVKINDPVRMYLKEIGRVDLLTADEEIALALRIE-------------------------- 130
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
S+++L ANLRLVV +AK+Y GRG+S DL+QEG+MGLMK+
Sbjct: 131 --------------QGDEYSKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 176
Query: 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
VEKF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 177 VEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPV 215
>gi|410647040|ref|ZP_11357479.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
agarilytica NO2]
gi|410133406|dbj|GAC05878.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
agarilytica NO2]
Length = 327
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGDEASRQRMIVSNLRLVVKIARRYNNRGLALLDLVEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|407682423|ref|YP_006797597.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'English Channel 673']
gi|407244034|gb|AFT73220.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'English Channel 673']
Length = 330
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 177
>gi|158969744|gb|ABW86844.1| RpoS [Vibrio alginolyticus]
Length = 330
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 9/148 (6%)
Query: 271 TADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSR 330
TA EEF+ ++ D +L + G P LI A+ L R L ++R
Sbjct: 38 TAREEFDASSKSLDATQL------YLGEIGFSPLLILTAEEEVLYAR---RALRGDEAAR 88
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW+R
Sbjct: 89 KRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIR 148
Query: 391 QTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
QTI +A+ +RTIRLP+ IY+
Sbjct: 149 QTIERALMNQTRTIRLPIHVVKELNIYL 176
>gi|120598086|ref|YP_962660.1| RpoD family RNA polymerase sigma factor [Shewanella sp. W3-18-1]
gi|146293843|ref|YP_001184267.1| RpoD family RNA polymerase sigma factor [Shewanella putrefaciens
CN-32]
gi|120558179|gb|ABM24106.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella sp.
W3-18-1]
gi|145565533|gb|ABP76468.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella
putrefaciens CN-32]
Length = 326
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|113969467|ref|YP_733260.1| RNA polymerase, sigma 28 subunit [Shewanella sp. MR-4]
gi|114046700|ref|YP_737250.1| RNA polymerase, sigma 28 subunit [Shewanella sp. MR-7]
gi|117919573|ref|YP_868765.1| RNA polymerase, sigma 38 subunit, RpoS [Shewanella sp. ANA-3]
gi|113884151|gb|ABI38203.1| RNA polymerase, sigma 28 subunit [Shewanella sp. MR-4]
gi|113888142|gb|ABI42193.1| RNA polymerase, sigma 28 subunit [Shewanella sp. MR-7]
gi|117611905|gb|ABK47359.1| RNA polymerase, sigma 38 subunit, RpoS [Shewanella sp. ANA-3]
Length = 326
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|408411647|ref|ZP_11182785.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
gi|407874195|emb|CCK84591.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
Length = 389
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 40/172 (23%)
Query: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
N KA ++ + G NDP+R +L LLT +EE EL +I+
Sbjct: 100 NVEKAELENLAAPGSRMNDPVRQYLKRIGRVNLLTGNEEVELAKRIE------------- 146
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
++E+L NANLRLVV +AK+Y GRG+S
Sbjct: 147 ---------------------------AGDEEAKEELTNANLRLVVSIAKRYVGRGMSFL 179
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
DL+QEG+MGLMK+V+KF + G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 180 DLIQEGNMGLMKAVDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPV 231
>gi|407698787|ref|YP_006823574.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Black Sea 11']
gi|407247934|gb|AFT77119.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas macleodii str.
'Black Sea 11']
Length = 330
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 177
>gi|393762780|ref|ZP_10351406.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alishewanella agri BL06]
gi|392606402|gb|EIW89287.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alishewanella agri BL06]
Length = 329
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 83 LKGDQAARKRMIESNLRLVVKIARRYINRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 142
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 143 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYL 178
>gi|24374942|ref|NP_718985.1| RNA polymerase sigma-38 factor RpoS [Shewanella oneidensis MR-1]
gi|24349657|gb|AAN56429.1| RNA polymerase sigma-38 factor RpoS [Shewanella oneidensis MR-1]
Length = 326
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGCEKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|392543717|ref|ZP_10290854.1| RNA polymerase subunit RpoD [Pseudoalteromonas piscicida JCM 20779]
Length = 326
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|375110980|ref|ZP_09757194.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alishewanella jeotgali KCTC
22429]
gi|374569012|gb|EHR40181.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alishewanella jeotgali KCTC
22429]
Length = 329
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 83 LKGDQAARKRMIESNLRLVVKIARRYINRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 142
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 143 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNIYL 178
>gi|420337883|ref|ZP_14839445.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-315]
gi|391259757|gb|EIQ18831.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-315]
Length = 330
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ IY+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNIYL 179
>gi|410616637|ref|ZP_11327623.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
polaris LMG 21857]
gi|410163775|dbj|GAC31761.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
polaris LMG 21857]
Length = 327
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGDEASRQRMIVSNLRLVVKIARRYNNRGLALLDLVEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|410639023|ref|ZP_11349576.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
lipolytica E3]
gi|410141551|dbj|GAC16781.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
lipolytica E3]
Length = 328
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGDEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|449326056|gb|AGE92654.1| truncated RpoS [Cronobacter sakazakii]
Length = 268
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 99/149 (66%)
Query: 260 FLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDL 319
++ G ++LLT E +L +I+ + LE++KS+L+ + G EP+ + A ++ +S DL
Sbjct: 190 YINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQLAISLKISRADL 249
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
+S L + +REKL +N+RLV+ +A++Y G + DL+Q G +GL++ +EKF G
Sbjct: 250 RSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLLRGIEKFDHSRGF 309
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+ ++Y YWW+RQ + +A+ ++SRT+RLP+
Sbjct: 310 KISTYVYWWIRQGVSRALVENSRTLRLPI 338
>gi|409358553|ref|ZP_11236916.1| RNA polymerase sigma factor SigB [Dietzia alimentaria 72]
Length = 322
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LL A++E EL +I+ + L +Q ++ K IG
Sbjct: 24 DLVRVYLNGIGKTALLKAEDEVELSKRIE---------AGLYAQH-----ILATKKRIGP 69
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ DLK+ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 VRKSDLKAVVAEGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 130 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 164
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 96/150 (64%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G ++ LLT + +L +I+D I L+ ++SKL+ + G EP+ + A+++ +
Sbjct: 84 RIYLRGTVSKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAP 143
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L++ + +RE L +N RLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 144 ELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASR 203
Query: 378 GCRFASYAYWWVRQTIRKAIFQHSRTIRLP 407
G R ++Y YWW+RQ + +A+ +SR+ RLP
Sbjct: 204 GFRISTYVYWWIRQGVSRALADNSRSFRLP 233
>gi|410663546|ref|YP_006915917.1| RNA polymerase sigma factor RpoS [Simiduia agarivorans SA1 = DSM
21679]
gi|409025903|gb|AFU98187.1| RNA polymerase sigma factor RpoS [Simiduia agarivorans SA1 = DSM
21679]
Length = 319
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L S+R+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 72 LKGDESARKRMIESNLRLVVKIARRYVNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 131
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 132 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 167
>gi|33862729|ref|NP_894289.1| RNA polymerase sigma-70 factor family protein [Prochlorococcus
marinus str. MIT 9313]
gi|33634645|emb|CAE20631.1| Sigma-70 factor family [Prochlorococcus marinus str. MIT 9313]
Length = 308
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327
+LLT ++E + ++Q ++ L + L G E E++ D + + G
Sbjct: 16 QLLTPEQELTMGRKVQAMVAL-TNRCHLAGGAGPE---CEYSD-------DQRLTIRRGE 64
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387
++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++YAYW
Sbjct: 65 KAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYW 124
Query: 388 WVRQTIRKAIFQHSRTIRLPV 408
W+RQ + +A+ SRTIR+PV
Sbjct: 125 WIRQGLNRALSTQSRTIRIPV 145
>gi|409200914|ref|ZP_11229117.1| RNA polymerase subunit RpoD [Pseudoalteromonas flavipulchra JG1]
Length = 326
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGCEASRKRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|417756997|ref|ZP_12405068.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC2B]
gi|377872375|gb|EHU37021.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC2B]
Length = 338
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 313 GLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372
G + R L+ ++ +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEK
Sbjct: 86 GFARRALRGDV----ASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 141
Query: 373 FKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
F P+ G RF++YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 187
>gi|449472147|ref|XP_004153508.1| PREDICTED: RNA polymerase sigma factor RpoS-like [Cucumis sativus]
Length = 265
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|441508327|ref|ZP_20990251.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
gi|441447355|dbj|GAC48212.1| RNA polymerase sigma factor SigB [Gordonia aichiensis NBRC 108223]
Length = 336
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 101/183 (55%), Gaps = 13/183 (7%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S V +T SR A ++ L D +R++L G LL A++E EL QI+
Sbjct: 9 STSTVAPGDTTPSRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-- 66
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
+ L ++ L + RDL + G ++R L+ ANLRLVV +A
Sbjct: 67 -------AGLYAKH----VLATRKRLSAAKKRDLAIVVREGETARSHLLEANLRLVVSLA 115
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 406 LPV 408
LPV
Sbjct: 176 LPV 178
>gi|443325525|ref|ZP_21054216.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
gi|442794846|gb|ELS04242.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
Length = 294
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 21/140 (15%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
LLT +EE L QIQ ++ L ++ ++E K + +G
Sbjct: 20 LLTGEEEVILANQIQAMLPL----------LDKKDLVLEEKKIV-----------QNGQR 58
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
++ K++ ANLRLVV +AK+YQ RG++L DL+QEGS+GLM+ EKF P G +F++Y+YWW
Sbjct: 59 AKRKMVQANLRLVVSIAKKYQNRGLTLLDLIQEGSIGLMRGAEKFDPSKGYKFSTYSYWW 118
Query: 389 VRQTIRKAIFQHSRTIRLPV 408
+RQ + +AI +R IRLP+
Sbjct: 119 IRQAMTRAIANQARIIRLPL 138
>gi|395234494|ref|ZP_10412718.1| RNA polymerase sigma factor RpoS [Enterobacter sp. Ag1]
gi|394730940|gb|EJF30767.1| RNA polymerase sigma factor RpoS [Enterobacter sp. Ag1]
Length = 330
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|296171822|ref|ZP_06852936.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295893958|gb|EFG73726.1| RNA polymerase principal sigma factor SigB [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 329
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 31 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 76
Query: 315 SCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ R DL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 77 NRRRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 136
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 137 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|254821657|ref|ZP_05226658.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379748152|ref|YP_005338973.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|379755443|ref|YP_005344115.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|379762989|ref|YP_005349386.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|387876818|ref|YP_006307122.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|406031681|ref|YP_006730572.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|443306610|ref|ZP_21036398.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
gi|378800516|gb|AFC44652.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare ATCC
13950]
gi|378805659|gb|AFC49794.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-02]
gi|378810931|gb|AFC55065.1| RNA polymerase sigma factor SigB [Mycobacterium intracellulare
MOTT-64]
gi|386790276|gb|AFJ36395.1| RNA polymerase sigma factor SigB [Mycobacterium sp. MOTT36Y]
gi|405130228|gb|AFS15483.1| RNA polymerase sigma factor sigB [Mycobacterium indicus pranii MTCC
9506]
gi|442768174|gb|ELR86168.1| RNA polymerase sigma factor SigB [Mycobacterium sp. H4Y]
Length = 319
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLEAVVRDGKAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|422013116|ref|ZP_16359745.1| sigma S (sigma 38) factor of RNA polymerase [Providencia
burhodogranariea DSM 19968]
gi|414103980|gb|EKT65553.1| sigma S (sigma 38) factor of RNA polymerase [Providencia
burhodogranariea DSM 19968]
Length = 328
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 70/90 (77%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
SR+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW
Sbjct: 88 SRQRMIESNLRLVVKISRRYNNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFSTYATWW 147
Query: 389 VRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+RQTI +AI +RTIRLP+ IY+
Sbjct: 148 IRQTIERAIMNQTRTIRLPIHIVKELNIYL 177
>gi|406980501|gb|EKE02092.1| RNA polymerase sigma factor [uncultured bacterium]
Length = 348
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 77/117 (65%), Gaps = 16/117 (13%)
Query: 298 QFGREPTLI-----EWAKAIG-LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351
Q GR P LI E AK+I +C + ++EKL+NANLRLVV +AK+Y GR
Sbjct: 77 QIGRIPLLIPDEEIELAKSIKETNC----------SIAKEKLVNANLRLVVSIAKKYIGR 126
Query: 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G+S DL+QEG+MGLM++ EKF G +F++YA WW++Q I + I SRTIRLPV
Sbjct: 127 GLSFLDLIQEGNMGLMRAAEKFDYAKGYKFSTYATWWIQQAITRGIADKSRTIRLPV 183
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 101/183 (55%), Gaps = 13/183 (7%)
Query: 226 SKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDL 285
S V + +T SR A ++ L D +R++L G LL A++E EL QI+
Sbjct: 9 STSTVASGDTTPSRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE-- 66
Query: 286 IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345
+ L ++ L + RDL + G +R L+ ANLRLVV +A
Sbjct: 67 -------AGLYAKH----VLATRKRLSAAKKRDLTIVVREGEVARAHLLEANLRLVVSLA 115
Query: 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405
K+Y GRG+ L DL+QEG++GL++++EKF G +F++YA WW+RQ I + + SRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 406 LPV 408
LPV
Sbjct: 176 LPV 178
>gi|118463509|ref|YP_882780.1| RNA polymerase sigma factor SigB [Mycobacterium avium 104]
gi|254776043|ref|ZP_05217559.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp. avium
ATCC 25291]
gi|440778274|ref|ZP_20957040.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
gi|118164796|gb|ABK65693.1| sigma factor SigB [Mycobacterium avium 104]
gi|436721377|gb|ELP45512.1| RNA polymerase sigma factor SigB [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 319
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL++ + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
Length = 397
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 13/154 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL ++++ E L K
Sbjct: 99 DLVRVYLNGIGKTALLTAADEVEL-------------SQRIEAGLYAEHLLETGEKLTRA 145
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDLK G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 146 RKRDLKILAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 205
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 206 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 239
>gi|213417289|ref|ZP_03350433.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 277
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|419262567|ref|ZP_13804978.1| RNA polymerase sigma factor, sigma-70 family protein [Escherichia
coli DEC10B]
gi|378104529|gb|EHW66187.1| RNA polymerase sigma factor, sigma-70 family protein [Escherichia
coli DEC10B]
Length = 255
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|387888206|ref|YP_006318504.1| sigma factor RpoS [Escherichia blattae DSM 4481]
gi|414594459|ref|ZP_11444096.1| RNA polymerase sigma-S factor [Escherichia blattae NBRC 105725]
gi|386923039|gb|AFJ45993.1| sigma factor RpoS [Escherichia blattae DSM 4481]
gi|403194659|dbj|GAB81748.1| RNA polymerase sigma-S factor [Escherichia blattae NBRC 105725]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|333894540|ref|YP_004468415.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas sp. SN2]
gi|332994558|gb|AEF04613.1| sigma S (sigma 38) factor of RNA polymerase, major sigma factor
during stationary phase [Alteromonas sp. SN2]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 82 LRGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 141
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 142 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 177
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L +Q L+E +K +
Sbjct: 24 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAQH-----LLETSKRLSA 69
Query: 315 SCR-DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ + DL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 70 AKKKDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 129
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 130 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 164
>gi|359419322|ref|ZP_09211280.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
gi|358244729|dbj|GAB09349.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
Length = 321
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG- 313
D +R++L G LL A++E EL QI+ + L ++ ++ K IG
Sbjct: 23 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------AGLYAKH-----VLATRKRIGP 68
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + G +R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 69 VRKRDLNQIVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 128
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 129 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 163
>gi|116075407|ref|ZP_01472667.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116067604|gb|EAU73358.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 310
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 91/144 (63%), Gaps = 17/144 (11%)
Query: 268 KLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC---RDLKSELH 324
+LLT ++E + ++Q ++ + E+ L A G +C + K +
Sbjct: 16 QLLTPEQELTMGRKVQAMVAI-TERCML-------------AGGTGPACNYSEEEKRTIK 61
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
G ++ ++I ANLRLVV++AK+YQG+G+ L DL+QEG++GL ++VEK+ P G RF++Y
Sbjct: 62 KGEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV 408
AYWW+RQ + +A+ SRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|410633206|ref|ZP_11343853.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
arctica BSs20135]
gi|410147375|dbj|GAC20720.1| RNA polymerase nonessential primary-like sigma factor [Glaciecola
arctica BSs20135]
Length = 327
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 79 LKGDEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 138
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 139 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 174
>gi|397163648|ref|ZP_10487106.1| RNA polymerase sigma factor RpoS [Enterobacter radicincitans DSM
16656]
gi|396094203|gb|EJI91755.1| RNA polymerase sigma factor RpoS [Enterobacter radicincitans DSM
16656]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|377577340|ref|ZP_09806323.1| RNA polymerase sigma-S factor [Escherichia hermannii NBRC 105704]
gi|377541868|dbj|GAB51488.1| RNA polymerase sigma-S factor [Escherichia hermannii NBRC 105704]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LLTA +E EL +I+ + L + ++E K +
Sbjct: 25 DLVRVYLNGIGRTALLTAADEVELAKRIE---------AGLYAAH-----VLETGKRLSA 70
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 71 SKKRDLAAIVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 130
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 131 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|429094326|ref|ZP_19156873.1| RNA polymerase sigma factor RpoS [Cronobacter dublinensis 1210]
gi|429097675|ref|ZP_19159781.1| RNA polymerase sigma factor RpoS [Cronobacter dublinensis 582]
gi|426284015|emb|CCJ85894.1| RNA polymerase sigma factor RpoS [Cronobacter dublinensis 582]
gi|426740708|emb|CCJ82986.1| RNA polymerase sigma factor RpoS [Cronobacter dublinensis 1210]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|440772903|ref|ZP_20951804.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436417268|gb|ELP15163.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|372271421|ref|ZP_09507469.1| RpoD family RNA polymerase sigma factor [Marinobacterium stanieri
S30]
Length = 345
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 100 LKGDEASRKRMIESNLRLVVKIARRYINRGLTLLDLIEEGNLGLIRAVEKFDPERGFRFS 159
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 160 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 195
>gi|427675992|ref|ZP_18962589.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414057540|gb|EKT39294.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
Length = 332
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 86 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 145
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 146 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 181
>gi|420276745|ref|ZP_14779027.1| RNA polymerase sigma factor [Escherichia coli PA40]
gi|424252459|ref|ZP_17891125.1| RNA polymerase sigma factor [Escherichia coli PA25]
gi|424457249|ref|ZP_17908381.1| RNA polymerase sigma factor [Escherichia coli PA33]
gi|424570710|ref|ZP_18011265.1| RNA polymerase sigma factor [Escherichia coli EC4448]
gi|390721130|gb|EIN93831.1| RNA polymerase sigma factor [Escherichia coli PA25]
gi|390744322|gb|EIO15224.1| RNA polymerase sigma factor [Escherichia coli PA33]
gi|390757093|gb|EIO26582.1| RNA polymerase sigma factor [Escherichia coli PA40]
gi|390894779|gb|EIP54273.1| RNA polymerase sigma factor [Escherichia coli EC4448]
Length = 261
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|365848056|ref|ZP_09388536.1| RNA polymerase sigma factor RpoS [Yokenella regensburgei ATCC
43003]
gi|364571450|gb|EHM49037.1| RNA polymerase sigma factor RpoS [Yokenella regensburgei ATCC
43003]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW--AKAIGLSCRDLKSELHSGNSSR 330
DE + + ++Q + LE + +L+ E L W A +G + ++L+ L ++
Sbjct: 390 DEARDRVLRMQKKVALEPDNKELKEHLA-ELELRMWMTADEMGDAYQELRKWLREARRAK 448
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390
++++ ANLRLV+ +AK+Y RG+S DL+QEG+MGLMK+VEKF+ + G +F++YA WW+R
Sbjct: 449 DEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIR 508
Query: 391 QTIRKAIFQHSRTIRLPV 408
Q I ++I +RTIR+PV
Sbjct: 509 QAITRSIADQARTIRIPV 526
>gi|429120408|ref|ZP_19181085.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii 680]
gi|426325151|emb|CCK11822.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii 680]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|311278284|ref|YP_003940515.1| RpoD subfamily RNA polymerase sigma-70 subunit [Enterobacter
cloacae SCF1]
gi|308747479|gb|ADO47231.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Enterobacter
cloacae SCF1]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|197247378|ref|YP_002147821.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197211081|gb|ACH48478.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
Length = 269
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|146312853|ref|YP_001177927.1| RNA polymerase sigma factor RpoS [Enterobacter sp. 638]
gi|145319729|gb|ABP61876.1| RNA polymerase, sigma 38 subunit, RpoS [Enterobacter sp. 638]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|433647324|ref|YP_007292326.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297101|gb|AGB22921.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 319
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L + L+E K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAAH-----LLETRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|423121848|ref|ZP_17109532.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5246]
gi|376393461|gb|EHT06118.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5246]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|340787099|ref|YP_004752564.1| RNA polymerase sigma factor RpoS [Collimonas fungivorans Ter331]
gi|340552366|gb|AEK61741.1| RNA polymerase sigma factor RpoS [Collimonas fungivorans Ter331]
Length = 341
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Query: 326 GN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASY 384
GN +R+K+I NLRLVV +AK Y RG++L DL++EG++GLM++++KF+P+ G RF++Y
Sbjct: 97 GNFEARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFRFSTY 156
Query: 385 AYWWVRQTIRKAIFQHSRTIRLPV-MTFNLSPIYIFKFYV 423
A WW+RQ+I +AI +RT+RLPV M L+ I K+++
Sbjct: 157 ATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHL 196
>gi|336246873|ref|YP_004590583.1| RNA polymerase sigma factor RpoS [Enterobacter aerogenes KCTC 2190]
gi|334732929|gb|AEG95304.1| RNA polymerase sigma factor RpoS [Enterobacter aerogenes KCTC 2190]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|237785656|ref|YP_002906361.1| RNA polymerase sigma factor SigB [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758568|gb|ACR17818.1| RNA polymerase sigma factor B [Corynebacterium kroppenstedtii DSM
44385]
Length = 326
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL +I+ + L +Q L+E +
Sbjct: 29 DLVRVYLNGIGRTALLNAEDEVELSQRIE---------AGLYAQH-----LLESDEQFTP 74
Query: 315 SC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S RDLK+ G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL+++VEKF
Sbjct: 75 SKKRDLKAVAKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKF 134
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 135 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 169
>gi|449064777|ref|YP_007431860.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
gi|449033285|gb|AGE68712.1| RNA polymerase sigma factor sigB [Mycobacterium bovis BCG str.
Korea 1168P]
Length = 338
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 40 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 85
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 86 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 145
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 146 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 180
>gi|444355020|ref|YP_007391164.1| RNA polymerase sigma factor RpoS [Enterobacter aerogenes EA1509E]
gi|443905850|emb|CCG33624.1| RNA polymerase sigma factor RpoS [Enterobacter aerogenes EA1509E]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|424129515|ref|ZP_17862423.1| RNA polymerase sigma factor RpoS [Escherichia coli PA9]
gi|425367918|ref|ZP_18753068.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1862]
gi|390683020|gb|EIN58757.1| RNA polymerase sigma factor RpoS [Escherichia coli PA9]
gi|408285158|gb|EKJ04208.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1862]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|237809473|ref|YP_002893913.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tolumonas auensis
DSM 9187]
gi|237501734|gb|ACQ94327.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tolumonas auensis
DSM 9187]
Length = 324
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +++R ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 77 LRGDDAARNRMIESNLRLVVKIARRYNNRGLALLDLVEEGNLGLIRAVEKFDPERGFRFS 136
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQT+ +AI +RTIRLP+ +Y+
Sbjct: 137 TYATWWIRQTVERAIMNQTRTIRLPIHVVKELNVYL 172
>gi|213859421|ref|ZP_03385125.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 319
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|449326044|gb|AGE92648.1| truncated RpoS [Cronobacter sakazakii]
Length = 332
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 86 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 145
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 146 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 181
>gi|389839809|ref|YP_006341893.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii ES15]
gi|429081594|ref|ZP_19144696.1| RNA polymerase sigma factor RpoS [Cronobacter condimenti 1330]
gi|429087921|ref|ZP_19150653.1| RNA polymerase sigma factor RpoS [Cronobacter universalis NCTC
9529]
gi|429101529|ref|ZP_19163503.1| RNA polymerase sigma factor RpoS [Cronobacter turicensis 564]
gi|429111396|ref|ZP_19173166.1| RNA polymerase sigma factor RpoS [Cronobacter malonaticus 507]
gi|429116627|ref|ZP_19177545.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii 701]
gi|449307087|ref|YP_007439443.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii SP291]
gi|387850285|gb|AFJ98382.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii ES15]
gi|426288178|emb|CCJ89616.1| RNA polymerase sigma factor RpoS [Cronobacter turicensis 564]
gi|426312553|emb|CCJ99279.1| RNA polymerase sigma factor RpoS [Cronobacter malonaticus 507]
gi|426319756|emb|CCK03658.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii 701]
gi|426507724|emb|CCK15765.1| RNA polymerase sigma factor RpoS [Cronobacter universalis NCTC
9529]
gi|426549729|emb|CCJ70737.1| RNA polymerase sigma factor RpoS [Cronobacter condimenti 1330]
gi|449097120|gb|AGE85154.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii SP291]
gi|449326046|gb|AGE92649.1| RpoS [Cronobacter sakazakii]
Length = 330
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|417792211|ref|ZP_12439600.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii E899]
gi|333953717|gb|EGL71630.1| RNA polymerase sigma factor RpoS [Cronobacter sakazakii E899]
gi|449326058|gb|AGE92655.1| RpoS [Cronobacter sakazakii]
gi|449326062|gb|AGE92657.1| RpoS [Cronobacter sakazakii]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|304312494|ref|YP_003812092.1| RNA sigma factor RpoS [gamma proteobacterium HdN1]
gi|301798227|emb|CBL46449.1| RNA sigma factor RpoS [gamma proteobacterium HdN1]
Length = 342
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+++I +NLRLVV +A++Y RG+SL DL++EG++GL+++VEKF P+ G RF+
Sbjct: 96 LRGNADARKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFS 155
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 156 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 191
>gi|148823899|ref|YP_001288653.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis F11]
gi|253798208|ref|YP_003031209.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
1435]
gi|308232219|ref|ZP_07415326.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308369834|ref|ZP_07419229.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308371106|ref|ZP_07423839.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308372374|ref|ZP_07428435.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308373485|ref|ZP_07432499.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308374669|ref|ZP_07436917.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308375503|ref|ZP_07444157.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308377104|ref|ZP_07441142.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308378072|ref|ZP_07481430.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308379289|ref|ZP_07485765.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308380449|ref|ZP_07489983.2| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|385991992|ref|YP_005910290.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
gi|148722426|gb|ABR07051.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis F11]
gi|253319711|gb|ACT24314.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
1435]
gi|308214646|gb|EFO74045.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu001]
gi|308326293|gb|EFP15144.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu002]
gi|308329821|gb|EFP18672.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu003]
gi|308333464|gb|EFP22315.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu004]
gi|308337459|gb|EFP26310.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu005]
gi|308341132|gb|EFP29983.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu006]
gi|308346083|gb|EFP34934.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu007]
gi|308348958|gb|EFP37809.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu008]
gi|308353656|gb|EFP42507.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu009]
gi|308357503|gb|EFP46354.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu010]
gi|308361457|gb|EFP50308.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
SUMu011]
gi|339299185|gb|AEJ51295.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5180]
Length = 345
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 47 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 92
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 93 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 152
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 153 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 187
>gi|417673802|ref|ZP_12323247.1| RNA polymerase sigma factor RpoS [Shigella dysenteriae 155-74]
gi|420360037|ref|ZP_14861000.1| RNA polymerase sigma factor RpoS [Shigella sonnei 3226-85]
gi|424488463|ref|ZP_17937025.1| RNA polymerase sigma factor RpoS [Escherichia coli TW09098]
gi|424558230|ref|ZP_17999647.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4436]
gi|5804831|emb|CAB53534.1| RpoS protein [Escherichia coli O157:H7]
gi|332087634|gb|EGI92761.1| RNA polymerase sigma factor RpoS [Shigella dysenteriae 155-74]
gi|390803869|gb|EIO70857.1| RNA polymerase sigma factor RpoS [Escherichia coli TW09098]
gi|390882862|gb|EIP43344.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4436]
gi|391280285|gb|EIQ38959.1| RNA polymerase sigma factor RpoS [Shigella sonnei 3226-85]
Length = 298
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 52 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 111
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 112 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 147
>gi|449326048|gb|AGE92650.1| truncated RpoS [Cronobacter sakazakii]
Length = 240
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|380310510|gb|AFD53783.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Pullorum]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|350540858|gb|AEQ27701.1| truncated RNA polymerase sigma 38 factor [Escherichia coli]
Length = 269
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|82778108|ref|YP_404457.1| RNA polymerase sigma factor RpoS [Shigella dysenteriae Sd197]
gi|81242256|gb|ABB62966.1| RNA polymerase, sigma S factor [Shigella dysenteriae Sd197]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|15803258|ref|NP_289290.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EDL933]
gi|12517195|gb|AAG57848.1|AE005502_2 RNA polymerase, sigma S (sigma38) factor; synthesis of many growth
phase related proteins [Escherichia coli O157:H7 str.
EDL933]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|407793322|ref|ZP_11140356.1| DNA-directed RNA polymerase sigma 38 subunit [Idiomarina
xiamenensis 10-D-4]
gi|407214945|gb|EKE84786.1| DNA-directed RNA polymerase sigma 38 subunit [Idiomarina
xiamenensis 10-D-4]
Length = 342
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR+++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 94 LKGDAASRQRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 153
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +A+ +RTIRLP+ +Y+
Sbjct: 154 TYATWWIRQTIERALMNQTRTIRLPIHVVKELNVYL 189
>gi|152971625|ref|YP_001336734.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206580660|ref|YP_002236889.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae 342]
gi|262041489|ref|ZP_06014687.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288933843|ref|YP_003437902.1| RpoD subfamily RNA polymerase sigma-70 subunit [Klebsiella
variicola At-22]
gi|330008320|ref|ZP_08306195.1| RNA polymerase sigma factor RpoS [Klebsiella sp. MS 92-3]
gi|365140098|ref|ZP_09346218.1| RNA polymerase sigma factor rpoS [Klebsiella sp. 4_1_44FAA]
gi|378980337|ref|YP_005228478.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036241|ref|YP_005956154.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae KCTC 2242]
gi|402779278|ref|YP_006634824.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419972562|ref|ZP_14487990.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980240|ref|ZP_14495526.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419983515|ref|ZP_14498665.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991199|ref|ZP_14506166.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997328|ref|ZP_14512125.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001128|ref|ZP_14515785.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420008163|ref|ZP_14522654.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013690|ref|ZP_14528000.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019385|ref|ZP_14533578.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024877|ref|ZP_14538888.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420029862|ref|ZP_14543690.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420035591|ref|ZP_14549254.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420042458|ref|ZP_14555951.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048117|ref|ZP_14561432.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420053189|ref|ZP_14566368.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420058709|ref|ZP_14571720.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420065377|ref|ZP_14578183.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073199|ref|ZP_14585828.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420075613|ref|ZP_14588088.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081464|ref|ZP_14593772.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909806|ref|ZP_16339610.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421914493|ref|ZP_16344140.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424832084|ref|ZP_18256812.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932083|ref|ZP_18350455.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425075217|ref|ZP_18478320.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425082909|ref|ZP_18486006.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425085853|ref|ZP_18488946.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425093007|ref|ZP_18496091.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428152469|ref|ZP_19000133.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428936564|ref|ZP_19009960.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae JHCK1]
gi|449047515|ref|ZP_21730808.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae hvKP1]
gi|150956474|gb|ABR78504.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206569718|gb|ACI11494.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae 342]
gi|259041148|gb|EEW42221.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288888572|gb|ADC56890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Klebsiella
variicola At-22]
gi|328535178|gb|EGF61679.1| RNA polymerase sigma factor RpoS [Klebsiella sp. MS 92-3]
gi|339763369|gb|AEJ99589.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae KCTC 2242]
gi|363653973|gb|EHL92917.1| RNA polymerase sigma factor rpoS [Klebsiella sp. 4_1_44FAA]
gi|364519748|gb|AEW62876.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397346551|gb|EJJ39665.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350971|gb|EJJ44057.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397355147|gb|EJJ48157.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397363121|gb|EJJ55764.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397364548|gb|EJJ57178.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372653|gb|EJJ65137.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397379773|gb|EJJ71964.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397383724|gb|EJJ75858.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389077|gb|EJJ81027.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397398180|gb|EJJ89845.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402321|gb|EJJ93924.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397407608|gb|EJJ98993.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397416061|gb|EJK07240.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397416260|gb|EJK07435.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397424606|gb|EJK15504.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397431814|gb|EJK22485.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397436547|gb|EJK27133.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397438175|gb|EJK28693.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397448112|gb|EJK38291.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397453229|gb|EJK43291.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402540220|gb|AFQ64369.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405595420|gb|EKB68810.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405599228|gb|EKB72404.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405606362|gb|EKB79354.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405611349|gb|EKB84117.1| RNA polymerase sigma factor rpoS [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407806270|gb|EKF77521.1| RNA polymerase sigma factor [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410116327|emb|CCM82235.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410123249|emb|CCM86765.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414709523|emb|CCN31227.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426298076|gb|EKV60511.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae JHCK1]
gi|427537597|emb|CCM96271.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448877380|gb|EMB12346.1| RNA polymerase sigma factor RpoS [Klebsiella pneumoniae hvKP1]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|153001641|ref|YP_001367322.1| RpoD family RNA polymerase sigma factor [Shewanella baltica OS185]
gi|160876377|ref|YP_001555693.1| RpoD family RNA polymerase sigma factor [Shewanella baltica OS195]
gi|217972427|ref|YP_002357178.1| RpoD subfamily RNA polymerase sigma-70 subunit [Shewanella baltica
OS223]
gi|378709578|ref|YP_005274472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Shewanella baltica
OS678]
gi|418025434|ref|ZP_12664412.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica OS625]
gi|151366259|gb|ABS09259.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella baltica
OS185]
gi|160861899|gb|ABX50433.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella baltica
OS195]
gi|217497562|gb|ACK45755.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica OS223]
gi|315268567|gb|ADT95420.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica OS678]
gi|353535046|gb|EHC04610.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica OS625]
Length = 326
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGCAKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|449326040|gb|AGE92646.1| RpoS [Cronobacter sakazakii]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|373950464|ref|ZP_09610425.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica OS183]
gi|386323699|ref|YP_006019816.1| RpoD subfamily RNA polymerase sigma-70 subunit [Shewanella baltica
BA175]
gi|333817844|gb|AEG10510.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica BA175]
gi|373887064|gb|EHQ15956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica OS183]
Length = 326
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGCAKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|417690953|ref|ZP_12340172.1| RNA polymerase sigma factor RpoS [Shigella boydii 5216-82]
gi|332087476|gb|EGI92604.1| RNA polymerase sigma factor RpoS [Shigella boydii 5216-82]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|297518365|ref|ZP_06936751.1| RNA polymerase sigma factor RpoS [Escherichia coli OP50]
Length = 327
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|296393381|ref|YP_003658265.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180528|gb|ADG97434.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 441
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 11/155 (7%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG-REPTLIEWAKAIG 313
D +R +L LL A++E EL +I+ + +E+ ++ ++ G R PT
Sbjct: 139 DSVRAYLKQIGKVALLNAEQEVELAKRIEAGL-YAQERLRIAAEEGDRLPTT-------- 189
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
S RDL + GN ++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+++VEKF
Sbjct: 190 -SRRDLNWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 248
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +A+ +RTIR+PV
Sbjct: 249 DYSKGYKFSTYATWWIRQAITRAMADQARTIRIPV 283
>gi|449326054|gb|AGE92653.1| truncated RpoS [Cronobacter sakazakii]
Length = 327
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|421727527|ref|ZP_16166688.1| RNA polymerase sigma factor RpoS [Klebsiella oxytoca M5al]
gi|410371703|gb|EKP26423.1| RNA polymerase sigma factor RpoS [Klebsiella oxytoca M5al]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|419149546|ref|ZP_13694198.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6B]
gi|377991198|gb|EHV54349.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6B]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|208821597|ref|ZP_03261917.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4042]
gi|218690868|ref|YP_002399080.1| RNA polymerase sigma factor RpoS [Escherichia coli ED1a]
gi|260856852|ref|YP_003230743.1| RNA polymerase sigma factor RpoS [Escherichia coli O26:H11 str.
11368]
gi|387608377|ref|YP_006097233.1| RNA polymerase sigma factor (sigma-38) [Escherichia coli 042]
gi|425139720|ref|ZP_18540102.1| RNA polymerase sigma factor RpoS [Escherichia coli 10.0833]
gi|428967102|ref|ZP_19037821.1| RNA polymerase sigma factor RpoS [Escherichia coli 90.0091]
gi|428985031|ref|ZP_19054427.1| RNA polymerase sigma factor RpoS [Escherichia coli 93.0055]
gi|208741720|gb|EDZ89402.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4042]
gi|218428432|emb|CAR09358.2| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli ED1a]
gi|257755501|dbj|BAI27003.1| RNA polymerase, sigma S factor [Escherichia coli O26:H11 str.
11368]
gi|284922677|emb|CBG35765.1| RNA polymerase sigma factor (sigma-38) [Escherichia coli 042]
gi|408577788|gb|EKK53338.1| RNA polymerase sigma factor RpoS [Escherichia coli 10.0833]
gi|427220073|gb|EKV89017.1| RNA polymerase sigma factor RpoS [Escherichia coli 90.0091]
gi|427240869|gb|EKW08315.1| RNA polymerase sigma factor RpoS [Escherichia coli 93.0055]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|54401868|gb|AAV34620.1| RNA polymerase subunit sigma-38 [Escherichia coli]
gi|54401871|gb|AAV34621.1| RNA polymerase subunit sigma-38 [Escherichia coli]
gi|54401874|gb|AAV34622.1| RNA polymerase subunit sigma-38 [Escherichia coli]
Length = 299
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|432771655|ref|ZP_20005977.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE50]
gi|431313660|gb|ELG01630.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE50]
Length = 317
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|407327705|dbj|BAM45410.1| sigma factor 5 [Marchantia polymorpha]
Length = 635
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 2/148 (1%)
Query: 262 WGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
W +R LL+A+EE+ L + ++ +LEK + + GR+P+ EWAKA L LK
Sbjct: 328 WDSLSRDLLSAEEEYSLASLMKPAKKLEKTFKAIGEELGRDPSDEEWAKAAQLDVHTLKR 387
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQ--GRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
++ G ++R KLI NLRLV+ A +YQ +SL DL QEG GL+ V+KF P+ G
Sbjct: 388 QVLLGRAARNKLIQHNLRLVLFQAHKYQKDNSSLSLFDLCQEGVSGLLHGVDKFDPKRGH 447
Query: 380 RFASYAYWWVRQTIRKAIFQHSRTIRLP 407
RF++YA +WVR +I +A+ + +R P
Sbjct: 448 RFSTYAVYWVRNSILRAMTRSGSVLRSP 475
>gi|424085298|ref|ZP_17821794.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA517]
gi|424098344|ref|ZP_17833647.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK1985]
gi|390642031|gb|EIN21453.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA517]
gi|390660324|gb|EIN38033.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK1985]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|254794681|ref|YP_003079518.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
TW14359]
gi|254594081|gb|ACT73442.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli O157:H7
str. TW14359]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|16761696|ref|NP_457313.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16766230|ref|NP_461845.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56414872|ref|YP_151947.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62181426|ref|YP_217843.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|157148284|ref|YP_001455603.1| RNA polymerase sigma factor RpoS [Citrobacter koseri ATCC BAA-895]
gi|167550225|ref|ZP_02343982.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168230998|ref|ZP_02656056.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168235962|ref|ZP_02661020.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242664|ref|ZP_02667596.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168261948|ref|ZP_02683921.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463936|ref|ZP_02697853.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168820376|ref|ZP_02832376.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194442500|ref|YP_002042165.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451079|ref|YP_002046882.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194470798|ref|ZP_03076782.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194738113|ref|YP_002115873.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197263839|ref|ZP_03163913.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197363800|ref|YP_002143437.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243199|ref|YP_002216890.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388856|ref|ZP_03215468.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928102|ref|ZP_03219302.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|207858184|ref|YP_002244835.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213052392|ref|ZP_03345270.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213648321|ref|ZP_03378374.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|224584701|ref|YP_002638499.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|237729723|ref|ZP_04560204.1| RNA polymerase sigma factor RpoS [Citrobacter sp. 30_2]
gi|238909692|ref|ZP_04653529.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|283835495|ref|ZP_06355236.1| RNA polymerase sigma factor RpoS [Citrobacter youngae ATCC 29220]
gi|340000473|ref|YP_004731357.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella bongori
NCTC 12419]
gi|365101473|ref|ZP_09332103.1| RNA polymerase sigma factor rpoS [Citrobacter freundii 4_7_47CFAA]
gi|374978938|ref|ZP_09720277.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|375002649|ref|ZP_09726989.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375115764|ref|ZP_09760934.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|375120386|ref|ZP_09765553.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|378446281|ref|YP_005233913.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|378451675|ref|YP_005239035.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700835|ref|YP_005182792.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|378956546|ref|YP_005214033.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|378985513|ref|YP_005248669.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378990248|ref|YP_005253412.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379702177|ref|YP_005243905.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497595|ref|YP_005398284.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|395229878|ref|ZP_10408188.1| RNA polymerase sigma factor RpoS [Citrobacter sp. A1]
gi|409246593|ref|YP_006887297.1| RNA polymerase sigma factor rpoS [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416424995|ref|ZP_11692030.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416428372|ref|ZP_11693872.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416438828|ref|ZP_11699807.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416445097|ref|ZP_11704141.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416451628|ref|ZP_11708378.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459794|ref|ZP_11714239.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416471659|ref|ZP_11719334.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416475611|ref|ZP_11720758.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416484727|ref|ZP_11724331.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416499348|ref|ZP_11730715.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416508954|ref|ZP_11736271.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416515402|ref|ZP_11738618.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416530202|ref|ZP_11744818.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416537095|ref|ZP_11748711.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416544703|ref|ZP_11752959.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416550828|ref|ZP_11756154.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416562697|ref|ZP_11762333.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416566384|ref|ZP_11763776.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416577043|ref|ZP_11769569.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416584865|ref|ZP_11774469.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416590674|ref|ZP_11777928.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416598123|ref|ZP_11782510.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416606521|ref|ZP_11787789.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416616398|ref|ZP_11794022.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416621941|ref|ZP_11796704.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416627229|ref|ZP_11799100.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416642328|ref|ZP_11805838.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416647353|ref|ZP_11808292.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416662316|ref|ZP_11815889.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416667925|ref|ZP_11818605.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416680163|ref|ZP_11823267.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416693382|ref|ZP_11826701.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416706181|ref|ZP_11831440.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416712140|ref|ZP_11835851.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416718336|ref|ZP_11840444.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416726920|ref|ZP_11846965.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416730956|ref|ZP_11848891.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416741250|ref|ZP_11855001.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416746389|ref|ZP_11857756.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416753731|ref|ZP_11861035.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416765171|ref|ZP_11868552.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416768730|ref|ZP_11870728.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417328417|ref|ZP_12113549.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417336002|ref|ZP_12118628.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|417343397|ref|ZP_12123977.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417351752|ref|ZP_12129259.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|417360378|ref|ZP_12134513.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|417367610|ref|ZP_12139426.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|417375523|ref|ZP_12144962.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|417385256|ref|ZP_12150370.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|417393084|ref|ZP_12155699.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|417425846|ref|ZP_12160578.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|417469520|ref|ZP_12165862.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|417478644|ref|ZP_12171689.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|417513126|ref|ZP_12177262.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|417520234|ref|ZP_12182189.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|417533383|ref|ZP_12187449.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|417541390|ref|ZP_12193140.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|418481986|ref|ZP_13051009.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418490456|ref|ZP_13057001.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418493430|ref|ZP_13059896.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418501179|ref|ZP_13067569.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418505427|ref|ZP_13071773.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418510660|ref|ZP_13076939.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418512272|ref|ZP_13078515.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418524761|ref|ZP_13090746.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|418761938|ref|ZP_13318074.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418765305|ref|ZP_13321394.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418773119|ref|ZP_13329111.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773587|ref|ZP_13329560.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418779669|ref|ZP_13335567.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418782819|ref|ZP_13338675.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418787933|ref|ZP_13343732.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418795118|ref|ZP_13350828.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418799320|ref|ZP_13354987.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418801152|ref|ZP_13356789.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418810022|ref|ZP_13365565.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418815944|ref|ZP_13371438.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418823527|ref|ZP_13378934.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418825608|ref|ZP_13380889.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418829810|ref|ZP_13384774.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836947|ref|ZP_13391829.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418841734|ref|ZP_13396549.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843470|ref|ZP_13398267.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418847703|ref|ZP_13402444.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418852550|ref|ZP_13407249.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418856782|ref|ZP_13411418.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418862400|ref|ZP_13416940.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418870282|ref|ZP_13424708.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419735608|ref|ZP_14262481.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419737002|ref|ZP_14263826.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419741775|ref|ZP_14268453.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419750446|ref|ZP_14276903.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|419787142|ref|ZP_14312857.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419792398|ref|ZP_14318038.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|420374902|ref|ZP_14874827.1| RNA polymerase sigma factor RpoS [Shigella flexneri 1235-66]
gi|421360505|ref|ZP_15810781.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421363280|ref|ZP_15813522.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369603|ref|ZP_15819778.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421379017|ref|ZP_15829096.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421385038|ref|ZP_15835061.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421390178|ref|ZP_15840154.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421396604|ref|ZP_15846529.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399383|ref|ZP_15849278.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421409909|ref|ZP_15859698.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421415023|ref|ZP_15864759.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417374|ref|ZP_15867084.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420712|ref|ZP_15870388.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421428357|ref|ZP_15877968.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421430799|ref|ZP_15880385.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421435772|ref|ZP_15885308.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421440191|ref|ZP_15889671.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421443751|ref|ZP_15893190.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421449221|ref|ZP_15898605.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569989|ref|ZP_16015685.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421580360|ref|ZP_16025918.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584046|ref|ZP_16029556.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|421846690|ref|ZP_16279836.1| RNA polymerase sigma factor RpoS [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|421886109|ref|ZP_16317290.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422027134|ref|ZP_16373480.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|423141409|ref|ZP_17129047.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|424730093|ref|ZP_18158691.1| rna polymerase sigma factor [Citrobacter sp. L17]
gi|427571359|ref|ZP_18933496.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427639497|ref|ZP_18948062.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427662467|ref|ZP_18957772.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|436602066|ref|ZP_20513106.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436772009|ref|ZP_20520908.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436799579|ref|ZP_20523865.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436807569|ref|ZP_20527612.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436818460|ref|ZP_20535093.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832683|ref|ZP_20536973.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436852970|ref|ZP_20542995.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436861241|ref|ZP_20548425.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867529|ref|ZP_20552683.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436880456|ref|ZP_20560215.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891499|ref|ZP_20566199.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436899593|ref|ZP_20571004.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436903104|ref|ZP_20573568.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436914811|ref|ZP_20579658.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919511|ref|ZP_20582292.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436928802|ref|ZP_20588008.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436938585|ref|ZP_20593372.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436945853|ref|ZP_20597681.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436955317|ref|ZP_20602192.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436985253|ref|ZP_20614838.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436993390|ref|ZP_20618183.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437004834|ref|ZP_20622064.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437018749|ref|ZP_20626954.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437027385|ref|ZP_20630274.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437050779|ref|ZP_20640924.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437062011|ref|ZP_20647377.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066927|ref|ZP_20649989.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437073846|ref|ZP_20653288.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437082931|ref|ZP_20658674.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437097672|ref|ZP_20665127.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437110457|ref|ZP_20667803.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437118875|ref|ZP_20670610.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437129416|ref|ZP_20675892.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437141874|ref|ZP_20683558.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437146044|ref|ZP_20685833.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437153230|ref|ZP_20690336.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437159036|ref|ZP_20693624.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437168724|ref|ZP_20699162.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437184376|ref|ZP_20708241.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437207755|ref|ZP_20712674.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437264621|ref|ZP_20719897.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437269520|ref|ZP_20722763.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437277731|ref|ZP_20727090.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437302145|ref|ZP_20733479.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437315752|ref|ZP_20737440.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437327584|ref|ZP_20740526.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437341653|ref|ZP_20744776.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437398133|ref|ZP_20751577.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437417408|ref|ZP_20753827.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437484018|ref|ZP_20769102.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437495774|ref|ZP_20772918.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437594110|ref|ZP_20795657.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437605197|ref|ZP_20799376.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437619233|ref|ZP_20803385.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437644538|ref|ZP_20808623.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437661533|ref|ZP_20813052.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437678738|ref|ZP_20817854.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437691571|ref|ZP_20820835.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437711051|ref|ZP_20826729.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437729900|ref|ZP_20831032.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437792468|ref|ZP_20837297.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437808354|ref|ZP_20840059.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437841076|ref|ZP_20846589.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|437924598|ref|ZP_20850857.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|438046224|ref|ZP_20856008.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438094973|ref|ZP_20861928.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438101594|ref|ZP_20864421.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438122974|ref|ZP_20872374.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440762278|ref|ZP_20941340.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|445145500|ref|ZP_21387462.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445151376|ref|ZP_21390326.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445171721|ref|ZP_21396209.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445217676|ref|ZP_21402303.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445219212|ref|ZP_21402594.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445248234|ref|ZP_21408551.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445351891|ref|ZP_21420624.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445357819|ref|ZP_21422276.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452123252|ref|YP_007473500.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|61236740|sp|P0A2E5.1|RPOS_SALTY RecName: Full=RNA polymerase sigma factor RpoS; AltName:
Full=Sigma-38
gi|61236751|sp|P0A2E6.1|RPOS_SALTI RecName: Full=RNA polymerase sigma factor RpoS; AltName:
Full=Sigma-38
gi|61236761|sp|P0A2E7.1|RPOS_SALDU RecName: Full=RNA polymerase sigma factor RpoS; AltName:
Full=Sigma-38
gi|1073666|pir||S49471 transcription initiation factor sigma kaltF - Salmonella
choleraesuis
gi|6010738|gb|AAF01235.1|AF184104_1 mutant RpoS [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|558645|emb|CAA57640.1| katF (rpoS) [Salmonella enterica]
gi|602087|emb|CAA54798.1| KatF [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16421473|gb|AAL21804.1| sigma S (sigma 38) factor of RNA polymerase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16503997|emb|CAD06030.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|56129129|gb|AAV78635.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62129059|gb|AAX66762.1| sigma S (sigma 38) factor of RNA polymerase, major sigmafactor
during stationary phase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|157085489|gb|ABV15167.1| hypothetical protein CKO_04101 [Citrobacter koseri ATCC BAA-895]
gi|194401163|gb|ACF61385.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409383|gb|ACF69602.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194457162|gb|EDX46001.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194713615|gb|ACF92836.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633598|gb|EDX52012.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095277|emb|CAR60830.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197242094|gb|EDY24714.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290706|gb|EDY30060.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197937715|gb|ACH75048.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199605954|gb|EDZ04499.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204322424|gb|EDZ07621.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205324779|gb|EDZ12618.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205334505|gb|EDZ21269.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338030|gb|EDZ24794.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205342988|gb|EDZ29752.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205349304|gb|EDZ35935.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206709987|emb|CAR34342.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|224469228|gb|ACN47058.1| RNA polymerase sigma factor [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|226908329|gb|EEH94247.1| RNA polymerase sigma factor RpoS [Citrobacter sp. 30_2]
gi|261248060|emb|CBG25894.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995054|gb|ACY89939.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|291068697|gb|EFE06806.1| RNA polymerase sigma factor RpoS [Citrobacter youngae ATCC 29220]
gi|301159483|emb|CBW19002.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312913942|dbj|BAJ37916.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087327|emb|CBY97092.1| RNA polymerase sigma factor rpoS [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321225598|gb|EFX50652.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322614255|gb|EFY11186.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322621681|gb|EFY18534.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624542|gb|EFY21375.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628873|gb|EFY25656.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633400|gb|EFY30142.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636024|gb|EFY32732.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639617|gb|EFY36303.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646916|gb|EFY43419.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322652217|gb|EFY48576.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654704|gb|EFY51023.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658925|gb|EFY55178.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664508|gb|EFY60702.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668243|gb|EFY64400.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673777|gb|EFY69878.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677838|gb|EFY73901.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681332|gb|EFY77364.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322683734|gb|EFY79744.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715910|gb|EFZ07481.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|323131276|gb|ADX18706.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|323193878|gb|EFZ79081.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323200347|gb|EFZ85429.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202369|gb|EFZ87413.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323210115|gb|EFZ95018.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216417|gb|EGA01144.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220766|gb|EGA05207.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226390|gb|EGA10598.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230730|gb|EGA14848.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234919|gb|EGA19005.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238958|gb|EGA23008.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241658|gb|EGA25689.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248195|gb|EGA32131.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251221|gb|EGA35094.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257395|gb|EGA41091.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263241|gb|EGA46779.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264257|gb|EGA47763.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271083|gb|EGA54511.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624653|gb|EGE30998.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|332989795|gb|AEF08778.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|339513835|emb|CCC31593.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella bongori
NCTC 12419]
gi|353077337|gb|EHB43097.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353567868|gb|EHC32940.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353568164|gb|EHC33143.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|353569333|gb|EHC33943.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|353586839|gb|EHC46307.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353588783|gb|EHC47742.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|353596092|gb|EHC53175.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353606367|gb|EHC60610.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353609844|gb|EHC63021.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|353617053|gb|EHC68141.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353627353|gb|EHC75675.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353637128|gb|EHC83022.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353637811|gb|EHC83532.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|353644523|gb|EHC88460.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353660751|gb|EHD00270.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|353660882|gb|EHD00365.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Wandsworth str. A4-580]
gi|357207157|gb|AET55203.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Gallinarum/pullorum str.
RKS5078]
gi|357955450|gb|EHJ81258.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|363551622|gb|EHL35939.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363551777|gb|EHL36089.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363563787|gb|EHL47853.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363564106|gb|EHL48167.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363567893|gb|EHL51889.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363572475|gb|EHL56366.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363579571|gb|EHL63350.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363647023|gb|EHL86252.1| RNA polymerase sigma factor rpoS [Citrobacter freundii 4_7_47CFAA]
gi|366064283|gb|EHN28482.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366064719|gb|EHN28916.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366066097|gb|EHN30273.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366067151|gb|EHN31305.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366067734|gb|EHN31882.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366076251|gb|EHN40290.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366083779|gb|EHN47695.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366830330|gb|EHN57201.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372207620|gb|EHP21119.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|377655116|gb|AFB73761.1| RNA polymerase sigma subunit [Salmonella enterica subsp. enterica
serovar Enteritidis]
gi|377655122|gb|AFB73764.1| RNA polymerase sigma subunit [Salmonella enterica subsp. enterica
serovar Enteritidis]
gi|379050581|gb|EHY68473.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379984424|emb|CCF89563.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380464416|gb|AFD59819.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Typhimurium str. 798]
gi|381293932|gb|EIC35072.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381306371|gb|EIC47245.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381307041|gb|EIC47907.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381315142|gb|EIC55905.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|391315018|gb|EIQ72552.1| RNA polymerase sigma factor RpoS [Shigella flexneri 1235-66]
gi|392618770|gb|EIX01163.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392621085|gb|EIX03451.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392730376|gb|EIZ87621.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392738443|gb|EIZ95587.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392741057|gb|EIZ98168.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392751877|gb|EJA08824.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392752627|gb|EJA09567.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392758989|gb|EJA15852.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392759613|gb|EJA16462.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392764294|gb|EJA21096.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392764842|gb|EJA21636.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392780873|gb|EJA37524.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392782750|gb|EJA39381.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392785518|gb|EJA42089.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392790547|gb|EJA47041.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392800069|gb|EJA56308.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392802604|gb|EJA58813.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392807804|gb|EJA63867.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392813310|gb|EJA69278.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392816806|gb|EJA72728.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392824210|gb|EJA79997.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392828954|gb|EJA84638.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392832129|gb|EJA87753.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|392835667|gb|EJA91258.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392835802|gb|EJA91391.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|394716553|gb|EJF22291.1| RNA polymerase sigma factor RpoS [Citrobacter sp. A1]
gi|395981072|gb|EJH90294.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395981726|gb|EJH90947.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395987741|gb|EJH96903.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395995352|gb|EJI04417.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396009058|gb|EJI17991.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396015237|gb|EJI24120.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396018670|gb|EJI27532.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396023842|gb|EJI32634.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396027477|gb|EJI36240.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396035058|gb|EJI43739.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396042209|gb|EJI50831.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396043757|gb|EJI52355.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396048392|gb|EJI56941.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396054625|gb|EJI63117.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396056184|gb|EJI64660.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396068326|gb|EJI76674.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396069382|gb|EJI77720.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396070518|gb|EJI78846.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|402520116|gb|EJW27470.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402526025|gb|EJW33307.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402531386|gb|EJW38597.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|411772020|gb|EKS55667.1| RNA polymerase sigma factor RpoS [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|414015389|gb|EKS99205.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414029633|gb|EKT12790.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414044559|gb|EKT27001.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414050297|gb|EKT32478.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|422895305|gb|EKU35094.1| rna polymerase sigma factor [Citrobacter sp. L17]
gi|434942981|gb|ELL49171.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434959609|gb|ELL53055.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434962097|gb|ELL55327.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434968525|gb|ELL61277.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434971004|gb|ELL63565.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434974615|gb|ELL66959.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434981282|gb|ELL73169.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434984315|gb|ELL76055.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434985685|gb|ELL77372.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434992681|gb|ELL84120.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435005300|gb|ELL96222.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435005628|gb|ELL96548.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435012728|gb|ELM03403.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435019534|gb|ELM09978.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435022893|gb|ELM13189.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029346|gb|ELM19404.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435033492|gb|ELM23384.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435034109|gb|ELM23999.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435035425|gb|ELM25270.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435045693|gb|ELM35319.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435062883|gb|ELM52057.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435065067|gb|ELM54173.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435072125|gb|ELM61054.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435081109|gb|ELM69763.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435085444|gb|ELM73997.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088495|gb|ELM76952.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435093483|gb|ELM81823.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097733|gb|ELM85992.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435106316|gb|ELM94333.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435107647|gb|ELM95630.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435108504|gb|ELM96469.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435118707|gb|ELN06358.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435126636|gb|ELN14030.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435128042|gb|ELN15402.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435131597|gb|ELN18808.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435136289|gb|ELN23379.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435140981|gb|ELN27923.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435149201|gb|ELN35897.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435150511|gb|ELN37183.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435159628|gb|ELN45946.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435160987|gb|ELN47229.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435172467|gb|ELN58010.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435173127|gb|ELN58652.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435178225|gb|ELN63461.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435180228|gb|ELN65336.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435191765|gb|ELN76321.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435193319|gb|ELN77798.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435198086|gb|ELN82312.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435202043|gb|ELN85897.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435204875|gb|ELN88529.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435217449|gb|ELN99883.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435226564|gb|ELO08129.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435251435|gb|ELO31046.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435257140|gb|ELO36434.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435258513|gb|ELO37773.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435268320|gb|ELO46910.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435273100|gb|ELO51450.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435273535|gb|ELO51800.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435280619|gb|ELO58316.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435288540|gb|ELO65559.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435290012|gb|ELO66962.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435293689|gb|ELO70354.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435296894|gb|ELO73245.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435300022|gb|ELO76117.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435313204|gb|ELO86936.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435314540|gb|ELO87965.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435319902|gb|ELO92653.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435324277|gb|ELO96210.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|436423756|gb|ELP21557.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|444846273|gb|ELX71454.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444856276|gb|ELX81314.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444857179|gb|ELX82193.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444861108|gb|ELX85998.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444871125|gb|ELX95575.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444874236|gb|ELX98502.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444886516|gb|ELY10269.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|444890027|gb|ELY13400.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|451912256|gb|AGF84062.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|455642999|gb|EMF22150.1| RNA polymerase sigma factor RpoS [Citrobacter freundii GTC 09479]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|440286414|ref|YP_007339179.1| RNA polymerase, sigma 38 subunit, RpoS [Enterobacteriaceae
bacterium strain FGI 57]
gi|440045936|gb|AGB76994.1| RNA polymerase, sigma 38 subunit, RpoS [Enterobacteriaceae
bacterium strain FGI 57]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|425387146|ref|ZP_18770705.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1866]
gi|408306876|gb|EKJ24238.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1866]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|419944677|ref|ZP_14461152.1| RNA polymerase sigma factor RpoS [Escherichia coli HM605]
gi|388418068|gb|EIL77890.1| RNA polymerase sigma factor RpoS [Escherichia coli HM605]
Length = 342
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|419290752|ref|ZP_13832841.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11A]
gi|378128526|gb|EHW89908.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11A]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A++E EL QI+ + L ++ L + +
Sbjct: 31 DLVRVYLNGIGRTALLNAEQEVELAKQIE---------TGLYAKH----VLATRKRLSAV 77
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
RDL + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 78 KKRDLAQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFD 137
Query: 375 PQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 138 YAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|416821517|ref|ZP_11894131.1| RNA polymerase sigma factor RpoS [Escherichia coli O55:H7 str. USDA
5905]
gi|425250493|ref|ZP_18643435.1| RNA polymerase sigma factor RpoS [Escherichia coli 5905]
gi|320662323|gb|EFX29720.1| RNA polymerase sigma factor RpoS [Escherichia coli O55:H7 str. USDA
5905]
gi|408162722|gb|EKH90609.1| RNA polymerase sigma factor RpoS [Escherichia coli 5905]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|283786707|ref|YP_003366572.1| RNA polymerase sigma factor (sigma-38) [Citrobacter rodentium
ICC168]
gi|282950161|emb|CBG89797.1| RNA polymerase sigma factor (sigma-38) [Citrobacter rodentium
ICC168]
Length = 330
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|168768834|ref|ZP_02793841.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4486]
gi|189362139|gb|EDU80558.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4486]
Length = 329
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|126175320|ref|YP_001051469.1| RpoD family RNA polymerase sigma factor [Shewanella baltica OS155]
gi|386342073|ref|YP_006038439.1| RpoD subfamily RNA polymerase sigma-70 subunit [Shewanella baltica
OS117]
gi|125998525|gb|ABN62600.1| RNA polymerase, sigma 70 subunit, RpoD family [Shewanella baltica
OS155]
gi|334864474|gb|AEH14945.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Shewanella
baltica OS117]
Length = 326
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 80 LKGCAKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 139
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 140 TYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 175
>gi|437509325|ref|ZP_20776464.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435232608|gb|ELO13697.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
Length = 305
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|6010728|gb|AAF01230.1|AF184099_1 mutant RpoS [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|419731986|ref|ZP_14258894.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381290617|gb|EIC31881.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|347951560|gb|AEP32916.1| RpoS [Dickeya solani]
Length = 280
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 83/122 (68%), Gaps = 5/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L+ A+ + + R L+ ++ SSR ++I +NLRLVV +A++Y RG++L
Sbjct: 54 GEIGYSP-LLTAAEEVYFARRALRGDV----SSRRRMIESNLRLVVKIARRYNNRGLALL 108
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+R TI +AI +RTIRLP+ +
Sbjct: 109 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRXTIERAIMNQTRTIRLPIHIVKELNV 168
Query: 417 YI 418
Y+
Sbjct: 169 YL 170
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 91/162 (56%), Gaps = 23/162 (14%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQI-------QDLIRLEKEKSKLQSQFGREPTLI 306
DP+R++L LLTA EE L +I Q L E EK +L R I
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFEDEKIELSRAEQRRLMRI 210
Query: 307 EWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366
E G ++++LI+ANLRLVV +AK+Y GRG+ DL+QEG++GL
Sbjct: 211 E----------------QVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 254
Query: 367 MKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
+++VEKF G +F++YA WW+RQ I +AI +RTIR+PV
Sbjct: 255 IRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 296
>gi|167970067|ref|ZP_02552344.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis H37Ra]
gi|254551766|ref|ZP_05142213.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|289746512|ref|ZP_06505890.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|294994199|ref|ZP_06799890.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis 210]
gi|297635318|ref|ZP_06953098.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
4207]
gi|297732314|ref|ZP_06961432.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis KZN
R506]
gi|375295476|ref|YP_005099743.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|385995613|ref|YP_005913911.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|392431684|ref|YP_006472728.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
gi|422813758|ref|ZP_16862130.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|424948366|ref|ZP_18364062.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|289687040|gb|EFD54528.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
02_1987]
gi|323718704|gb|EGB27866.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis
CDC1551A]
gi|328457981|gb|AEB03404.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
4207]
gi|339295567|gb|AEJ47678.1| RNA polymerase sigma factor SigB [Mycobacterium tuberculosis
CCDC5079]
gi|358232881|dbj|GAA46373.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|392053093|gb|AFM48651.1| RNA polymerase sigma factor sigB [Mycobacterium tuberculosis KZN
605]
Length = 333
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A E EL +I+ + E L+E K +G
Sbjct: 35 DLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH--------------LLETRKRLGE 80
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 81 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 140
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 141 DYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 175
>gi|377655118|gb|AFB73762.1| RNA polymerase sigma subunit [Salmonella enterica subsp. enterica
serovar Enteritidis]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|419160454|ref|ZP_13704956.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6D]
gi|378006423|gb|EHV69407.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6D]
Length = 314
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|289805538|ref|ZP_06536167.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 321
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|195939453|ref|ZP_03084835.1| RNA polymerase sigma factor RpoS, partial [Escherichia coli O157:H7
str. EC4024]
gi|424576865|ref|ZP_18016932.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1845]
gi|390919314|gb|EIP77668.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1845]
Length = 305
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|4100838|gb|AAD01001.1| RpoS [Escherichia coli]
gi|4100840|gb|AAD01002.1| RpoS [Escherichia coli]
gi|4100842|gb|AAD01003.1| RpoS [Escherichia coli]
Length = 328
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|6175930|gb|AAF05342.1|AF182106_2 truncated RNA polymerase sigma subunit [Escherichia coli]
Length = 303
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|15832849|ref|NP_311622.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
Sakai]
gi|74313307|ref|YP_311726.1| RNA polymerase sigma factor RpoS [Shigella sonnei Ss046]
gi|110642882|ref|YP_670612.1| RNA polymerase sigma factor RpoS [Escherichia coli 536]
gi|110806628|ref|YP_690148.1| RNA polymerase sigma factor RpoS [Shigella flexneri 5 str. 8401]
gi|157157336|ref|YP_001464064.1| RNA polymerase sigma factor RpoS [Escherichia coli E24377A]
gi|157162189|ref|YP_001459507.1| RNA polymerase sigma factor RpoS [Escherichia coli HS]
gi|168749933|ref|ZP_02774955.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4113]
gi|168755487|ref|ZP_02780494.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4401]
gi|168778725|ref|ZP_02803732.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4076]
gi|168787997|ref|ZP_02813004.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC869]
gi|170019013|ref|YP_001723967.1| RNA polymerase sigma factor RpoS [Escherichia coli ATCC 8739]
gi|170684160|ref|YP_001744890.1| RNA polymerase sigma factor RpoS [Escherichia coli SMS-3-5]
gi|191166775|ref|ZP_03028601.1| RNA polymerase sigma factor RpoS [Escherichia coli B7A]
gi|191171134|ref|ZP_03032684.1| RNA polymerase sigma factor RpoS [Escherichia coli F11]
gi|193065048|ref|ZP_03046123.1| RNA polymerase sigma factor RpoS [Escherichia coli E22]
gi|193069671|ref|ZP_03050623.1| RNA polymerase sigma factor RpoS [Escherichia coli E110019]
gi|194431745|ref|ZP_03064036.1| RNA polymerase sigma factor RpoS [Shigella dysenteriae 1012]
gi|194438995|ref|ZP_03071079.1| RNA polymerase sigma factor RpoS [Escherichia coli 101-1]
gi|208812039|ref|ZP_03253368.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4045]
gi|209395891|ref|YP_002272204.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4115]
gi|209920184|ref|YP_002294268.1| RNA polymerase sigma factor RpoS [Escherichia coli SE11]
gi|217326648|ref|ZP_03442731.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
TW14588]
gi|218559734|ref|YP_002392647.1| RNA polymerase sigma factor RpoS [Escherichia coli S88]
gi|218696339|ref|YP_002404006.1| RNA polymerase sigma factor RpoS [Escherichia coli 55989]
gi|218706235|ref|YP_002413754.1| RNA polymerase sigma factor RpoS [Escherichia coli UMN026]
gi|222157433|ref|YP_002557572.1| RNA polymerase sigma factor rpoS [Escherichia coli LF82]
gi|251786023|ref|YP_003000327.1| RNA polymerase, sigma S (sigma 38) factor, subunit of RNA
polymerase sigma 38 [Escherichia coli BL21(DE3)]
gi|253772403|ref|YP_003035234.1| RNA polymerase sigma factor RpoS [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162672|ref|YP_003045780.1| RNA polymerase sigma factor RpoS [Escherichia coli B str. REL606]
gi|254289433|ref|YP_003055181.1| RNA polymerase sigma factor [Escherichia coli BL21(DE3)]
gi|260845388|ref|YP_003223166.1| RNA polymerase, sigma S factor [Escherichia coli O103:H2 str.
12009]
gi|260869420|ref|YP_003235822.1| RNA polymerase, sigma S factor [Escherichia coli O111:H- str.
11128]
gi|261226035|ref|ZP_05940316.1| RNA polymerase sigma factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256708|ref|ZP_05949241.1| RNA polymerase, sigma S factor [Escherichia coli O157:H7 str.
FRIK966]
gi|291284068|ref|YP_003500886.1| RNA polymerase sigma factor [Escherichia coli O55:H7 str. CB9615]
gi|293406233|ref|ZP_06650159.1| RNA polymerase sigma factor RpoS [Escherichia coli FVEC1412]
gi|293412096|ref|ZP_06654819.1| RNA polymerase sigma factor RpoS [Escherichia coli B354]
gi|293415987|ref|ZP_06658627.1| RNA polymerase sigma factor RpoS [Escherichia coli B185]
gi|293449062|ref|ZP_06663483.1| RNA polymerase sigma factor RpoS [Escherichia coli B088]
gi|298381970|ref|ZP_06991567.1| RNA polymerase sigma factor rpoS [Escherichia coli FVEC1302]
gi|300899982|ref|ZP_07118185.1| RNA polymerase sigma factor RpoS [Escherichia coli MS 198-1]
gi|301027336|ref|ZP_07190677.1| RNA polymerase sigma factor RpoS [Escherichia coli MS 196-1]
gi|306812377|ref|ZP_07446575.1| RNA polymerase sigma factor RpoS [Escherichia coli NC101]
gi|307312831|ref|ZP_07592461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Escherichia coli
W]
gi|312973048|ref|ZP_07787221.1| RNA polymerase sigma factor RpoS [Escherichia coli 1827-70]
gi|331658855|ref|ZP_08359797.1| RNA polymerase sigma factor RpoS [Escherichia coli TA206]
gi|331664297|ref|ZP_08365203.1| RNA polymerase sigma factor RpoS [Escherichia coli TA143]
gi|331669480|ref|ZP_08370326.1| RNA polymerase sigma factor RpoS [Escherichia coli TA271]
gi|331684360|ref|ZP_08384952.1| RNA polymerase sigma factor RpoS [Escherichia coli H299]
gi|366159740|ref|ZP_09459602.1| RNA polymerase sigma factor RpoS [Escherichia sp. TW09308]
gi|383179893|ref|YP_005457898.1| RNA polymerase sigma factor RpoS [Shigella sonnei 53G]
gi|386281787|ref|ZP_10059446.1| RNA polymerase sigma factor rpoS [Escherichia sp. 4_1_40B]
gi|386603199|ref|YP_006109499.1| RNA polymerase sigma factor RpoS [Escherichia coli UM146]
gi|386610105|ref|YP_006125591.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli W]
gi|386615454|ref|YP_006135120.1| RNA polymerase sigma factor RpoS [Escherichia coli UMNK88]
gi|386620308|ref|YP_006139888.1| RpoS, RNA polymerase sigma factor [Escherichia coli NA114]
gi|386625460|ref|YP_006145188.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli O7:K1
str. CE10]
gi|386640228|ref|YP_006107026.1| sigma factor RpoS [Escherichia coli ABU 83972]
gi|386700346|ref|YP_006164183.1| RNA polymerase sigma factor RpoS [Escherichia coli KO11FL]
gi|386710597|ref|YP_006174318.1| RNA polymerase sigma factor RpoS [Escherichia coli W]
gi|387508093|ref|YP_006160349.1| RNA polymerase sigma factor RpoS [Escherichia coli O55:H7 str.
RM12579]
gi|387613364|ref|YP_006116480.1| RNA polymerase sigma factor (sigma-38) [Escherichia coli ETEC
H10407]
gi|387618012|ref|YP_006121034.1| RNA polymerase sigma factor RpoS [Escherichia coli O83:H1 str. NRG
857C]
gi|387830590|ref|YP_003350527.1| RNA polymerase sigma factor S RpoS [Escherichia coli SE15]
gi|404376046|ref|ZP_10981222.1| RNA polymerase sigma factor rpoS [Escherichia sp. 1_1_43]
gi|407470610|ref|YP_006782947.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480728|ref|YP_006777877.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
2011C-3493]
gi|410481294|ref|YP_006768840.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415779114|ref|ZP_11489886.1| RNA polymerase sigma factor RpoS [Escherichia coli 3431]
gi|415802775|ref|ZP_11500135.1| RNA polymerase sigma factor RpoS [Escherichia coli E128010]
gi|415811707|ref|ZP_11504020.1| RNA polymerase sigma factor RpoS [Escherichia coli LT-68]
gi|415818421|ref|ZP_11508143.1| RNA polymerase sigma factor RpoS [Escherichia coli OK1180]
gi|415830174|ref|ZP_11516076.1| RNA polymerase sigma factor RpoS [Escherichia coli OK1357]
gi|415839748|ref|ZP_11521490.1| RNA polymerase sigma factor RpoS [Escherichia coli RN587/1]
gi|415847010|ref|ZP_11525786.1| RNA polymerase sigma factor RpoS [Shigella sonnei 53G]
gi|416294500|ref|ZP_11650924.1| RNA polymerase sigma factor RpoS [Shigella flexneri CDC 796-83]
gi|416314656|ref|ZP_11658891.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
1044]
gi|416321890|ref|ZP_11663738.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC1212]
gi|416327629|ref|ZP_11667549.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
1125]
gi|416336746|ref|ZP_11673216.1| RNA polymerase sigma factor RpoS [Escherichia coli WV_060327]
gi|416340155|ref|ZP_11675170.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4100B]
gi|416800238|ref|ZP_11884717.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H- str. H
2687]
gi|416810803|ref|ZP_11889481.1| RNA polymerase sigma factor RpoS [Escherichia coli O55:H7 str.
3256-97]
gi|416831880|ref|ZP_11899227.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
LSU-61]
gi|417133855|ref|ZP_11978640.1| RNA polymerase sigma factor RpoS [Escherichia coli 5.0588]
gi|417140325|ref|ZP_11983575.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.0259]
gi|417174640|ref|ZP_12004436.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.2608]
gi|417199923|ref|ZP_12017160.1| RNA polymerase sigma factor RpoS [Escherichia coli 4.0522]
gi|417237334|ref|ZP_12035301.1| RNA polymerase sigma factor RpoS [Escherichia coli 9.0111]
gi|417251496|ref|ZP_12043261.1| RNA polymerase sigma factor RpoS [Escherichia coli 4.0967]
gi|417262343|ref|ZP_12049817.1| RNA polymerase sigma factor RpoS [Escherichia coli 2.3916]
gi|417270089|ref|ZP_12057449.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.3884]
gi|417272358|ref|ZP_12059707.1| RNA polymerase sigma factor RpoS [Escherichia coli 2.4168]
gi|417277194|ref|ZP_12064519.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.2303]
gi|417285788|ref|ZP_12073079.1| RNA polymerase sigma factor RpoS [Escherichia coli TW07793]
gi|417291802|ref|ZP_12079083.1| RNA polymerase sigma factor RpoS [Escherichia coli B41]
gi|417297032|ref|ZP_12084279.1| RNA polymerase sigma factor RpoS [Escherichia coli 900105 (10e)]
gi|417309192|ref|ZP_12096031.1| RNA polymerase sigma factor rpoS [Escherichia coli PCN033]
gi|417593065|ref|ZP_12243758.1| RNA polymerase sigma factor RpoS [Escherichia coli 2534-86]
gi|417609357|ref|ZP_12259857.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_DG131-3]
gi|417614188|ref|ZP_12264645.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_EH250]
gi|417619318|ref|ZP_12269731.1| RNA polymerase sigma factor RpoS [Escherichia coli G58-1]
gi|417630039|ref|ZP_12280275.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_MHI813]
gi|417635750|ref|ZP_12285961.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_S1191]
gi|417640518|ref|ZP_12290658.1| RNA polymerase sigma factor RpoS [Escherichia coli TX1999]
gi|417663304|ref|ZP_12312884.1| RNA polymerase sigma factor RpoS [Escherichia coli AA86]
gi|417668123|ref|ZP_12317665.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_O31]
gi|417806263|ref|ZP_12453208.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
LB226692]
gi|417834015|ref|ZP_12480462.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
01-09591]
gi|417866807|ref|ZP_12511847.1| hypothetical protein C22711_3735 [Escherichia coli O104:H4 str.
C227-11]
gi|418041391|ref|ZP_12679616.1| RNA polymerase sigma factor RpoS [Escherichia coli W26]
gi|418267843|ref|ZP_12886797.1| RNA polymerase sigma factor RpoS [Shigella sonnei str. Moseley]
gi|418304283|ref|ZP_12916077.1| RNA polymerase sigma factor RpoS [Escherichia coli UMNF18]
gi|418943466|ref|ZP_13496652.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H43 str.
T22]
gi|419014662|ref|ZP_13562006.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC1D]
gi|419052462|ref|ZP_13599329.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC3B]
gi|419058453|ref|ZP_13605256.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC3C]
gi|419081920|ref|ZP_13627367.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4A]
gi|419087756|ref|ZP_13633109.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4B]
gi|419099626|ref|ZP_13644820.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4D]
gi|419105269|ref|ZP_13650396.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4E]
gi|419110733|ref|ZP_13655787.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4F]
gi|419121791|ref|ZP_13666738.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC5B]
gi|419127391|ref|ZP_13672269.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC5C]
gi|419137877|ref|ZP_13682668.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC5E]
gi|419155154|ref|ZP_13699714.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6C]
gi|419165510|ref|ZP_13709964.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6E]
gi|419171431|ref|ZP_13715316.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7A]
gi|419176289|ref|ZP_13720103.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7B]
gi|419182066|ref|ZP_13725677.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7C]
gi|419187517|ref|ZP_13731027.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7D]
gi|419192809|ref|ZP_13736260.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7E]
gi|419216996|ref|ZP_13759992.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC8D]
gi|419239147|ref|ZP_13781858.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC9C]
gi|419256269|ref|ZP_13798776.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC10A]
gi|419279245|ref|ZP_13821489.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC10E]
gi|419285418|ref|ZP_13827587.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC10F]
gi|419301490|ref|ZP_13843488.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11C]
gi|419307620|ref|ZP_13849518.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11D]
gi|419312634|ref|ZP_13854494.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11E]
gi|419324311|ref|ZP_13866001.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12B]
gi|419330267|ref|ZP_13871867.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12C]
gi|419335803|ref|ZP_13877325.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12D]
gi|419341161|ref|ZP_13882622.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12E]
gi|419350873|ref|ZP_13892206.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13B]
gi|419356278|ref|ZP_13897531.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13C]
gi|419361349|ref|ZP_13902562.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13D]
gi|419366521|ref|ZP_13907677.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13E]
gi|419371206|ref|ZP_13912320.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC14A]
gi|419387361|ref|ZP_13928234.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC14D]
gi|419397818|ref|ZP_13938586.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC15B]
gi|419413897|ref|ZP_13954542.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC15E]
gi|419701545|ref|ZP_14229144.1| RNA polymerase sigma factor RpoS [Escherichia coli SCI-07]
gi|419805109|ref|ZP_14330253.1| RNA polymerase sigma factor RpoS [Escherichia coli AI27]
gi|419812845|ref|ZP_14337706.1| RNA polymerase sigma factor RpoS [Escherichia coli O32:H37 str. P4]
gi|419862111|ref|ZP_14384728.1| RNA polymerase sigma factor RpoS [Escherichia coli O103:H25 str.
CVM9340]
gi|419867580|ref|ZP_14389895.1| RNA polymerase sigma factor RpoS [Escherichia coli O103:H2 str.
CVM9450]
gi|419875085|ref|ZP_14396966.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H11 str.
CVM9534]
gi|419886511|ref|ZP_14407151.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9570]
gi|419892950|ref|ZP_14412957.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9574]
gi|419903194|ref|ZP_14422298.1| RNA polymerase sigma factor RpoS [Escherichia coli O26:H11 str.
CVM9942]
gi|419907446|ref|ZP_14426269.1| RNA polymerase sigma factor [Escherichia coli O26:H11 str.
CVM10026]
gi|419915951|ref|ZP_14434282.1| RNA polymerase sigma factor RpoS [Escherichia coli KD1]
gi|419920138|ref|ZP_14438265.1| RNA polymerase sigma factor RpoS [Escherichia coli KD2]
gi|419922503|ref|ZP_14440516.1| RNA polymerase sigma factor RpoS [Escherichia coli 541-15]
gi|419927149|ref|ZP_14444887.1| RNA polymerase sigma factor RpoS [Escherichia coli 541-1]
gi|419934519|ref|ZP_14451627.1| RNA polymerase sigma factor RpoS [Escherichia coli 576-1]
gi|419939791|ref|ZP_14456576.1| RNA polymerase sigma factor RpoS [Escherichia coli 75]
gi|419948438|ref|ZP_14464734.1| RNA polymerase sigma factor RpoS [Escherichia coli CUMT8]
gi|420092307|ref|ZP_14604021.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9602]
gi|420097739|ref|ZP_14609031.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9634]
gi|420099361|ref|ZP_14610596.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H11 str.
CVM9455]
gi|420107534|ref|ZP_14617867.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H11 str.
CVM9553]
gi|420115159|ref|ZP_14624736.1| RNA polymerase sigma factor RpoS [Escherichia coli O26:H11 str.
CVM10021]
gi|420128836|ref|ZP_14637384.1| RNA polymerase sigma factor S RpoS [Escherichia coli O26:H11 str.
CVM10224]
gi|420133395|ref|ZP_14641631.1| RNA polymerase sigma factor RpoS [Escherichia coli O26:H11 str.
CVM9952]
gi|420271128|ref|ZP_14773482.1| RNA polymerase sigma factor RpoS [Escherichia coli PA22]
gi|420282295|ref|ZP_14784528.1| RNA polymerase sigma factor RpoS [Escherichia coli TW06591]
gi|420288439|ref|ZP_14790623.1| RNA polymerase sigma factor RpoS [Escherichia coli TW10246]
gi|420293740|ref|ZP_14795855.1| RNA polymerase sigma factor RpoS [Escherichia coli TW11039]
gi|420316505|ref|ZP_14818378.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1734]
gi|420327013|ref|ZP_14828760.1| RNA polymerase sigma factor RpoS [Shigella flexneri CCH060]
gi|420332658|ref|ZP_14834307.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-1770]
gi|420348707|ref|ZP_14850089.1| RNA polymerase sigma factor RpoS [Shigella boydii 965-58]
gi|420386823|ref|ZP_14886170.1| RNA polymerase sigma factor RpoS [Escherichia coli EPECa12]
gi|420392712|ref|ZP_14891960.1| RNA polymerase sigma factor RpoS [Escherichia coli EPEC C342-62]
gi|421777352|ref|ZP_16213949.1| RNA polymerase sigma factor RpoS [Escherichia coli AD30]
gi|421813724|ref|ZP_16249436.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0416]
gi|421819547|ref|ZP_16255038.1| RNA polymerase sigma factor RpoS [Escherichia coli 10.0821]
gi|421825553|ref|ZP_16260908.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK920]
gi|421832250|ref|ZP_16267534.1| RNA polymerase sigma factor RpoS [Escherichia coli PA7]
gi|422331730|ref|ZP_16412745.1| RNA polymerase sigma factor rpoS [Escherichia coli 4_1_47FAA]
gi|422750237|ref|ZP_16804148.1| RNA polymerase sigma proteinRpoS [Escherichia coli H252]
gi|422754490|ref|ZP_16808316.1| RNA polymerase sigma proteinRpoS [Escherichia coli H263]
gi|422760194|ref|ZP_16813954.1| RNA polymerase sigma proteinRpoS [Escherichia coli E1167]
gi|422767751|ref|ZP_16821477.1| RNA polymerase sigma protein RpoS [Escherichia coli E1520]
gi|422771395|ref|ZP_16825085.1| RNA polymerase sigma proteinRpoS [Escherichia coli E482]
gi|422776040|ref|ZP_16829695.1| RNA polymerase sigma protein RpoS [Escherichia coli H120]
gi|422780342|ref|ZP_16833127.1| RNA polymerase sigma proteinRpoS [Escherichia coli TW10509]
gi|422787734|ref|ZP_16840472.1| RNA polymerase sigma proteinRpoS [Escherichia coli H489]
gi|422791953|ref|ZP_16844655.1| RNA polymerase sigma proteinRpoS [Escherichia coli TA007]
gi|422800656|ref|ZP_16849153.1| RNA polymerase sigma proteinRpoS [Escherichia coli M863]
gi|422807951|ref|ZP_16856379.1| RNA polymerase sigma proteinRpoS [Escherichia fergusonii B253]
gi|422817860|ref|ZP_16866073.1| RNA polymerase sigma factor rpoS [Escherichia coli M919]
gi|422828117|ref|ZP_16876289.1| RNA polymerase sigma factor rpoS [Escherichia coli B093]
gi|422835965|ref|ZP_16884016.1| RNA polymerase sigma factor rpoS [Escherichia coli E101]
gi|422840731|ref|ZP_16888701.1| RNA polymerase sigma factor rpoS [Escherichia coli H397]
gi|422959494|ref|ZP_16971129.1| RNA polymerase sigma factor rpoS [Escherichia coli H494]
gi|422970119|ref|ZP_16973912.1| RNA polymerase sigma factor rpoS [Escherichia coli TA124]
gi|422988839|ref|ZP_16979612.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
C227-11]
gi|422995731|ref|ZP_16986495.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
C236-11]
gi|423000879|ref|ZP_16991633.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
09-7901]
gi|423011048|ref|ZP_17001782.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-3677]
gi|423020276|ref|ZP_17010985.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4404]
gi|423025442|ref|ZP_17016139.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4522]
gi|423031263|ref|ZP_17021950.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4623]
gi|423039088|ref|ZP_17029762.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423044208|ref|ZP_17034875.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423045936|ref|ZP_17036596.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423054475|ref|ZP_17043282.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423061450|ref|ZP_17050246.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703922|ref|ZP_17678347.1| RNA polymerase sigma factor rpoS [Escherichia coli H730]
gi|423706899|ref|ZP_17681282.1| RNA polymerase sigma factor rpoS [Escherichia coli B799]
gi|424078837|ref|ZP_17815818.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA505]
gi|424104577|ref|ZP_17839340.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK1990]
gi|424111238|ref|ZP_17845474.1| RNA polymerase sigma factor RpoS [Escherichia coli 93-001]
gi|424123355|ref|ZP_17856677.1| RNA polymerase sigma factor RpoS [Escherichia coli PA5]
gi|424142374|ref|ZP_17874256.1| RNA polymerase sigma factor RpoS [Escherichia coli PA14]
gi|424148790|ref|ZP_17880166.1| RNA polymerase sigma factor RpoS [Escherichia coli PA15]
gi|424482297|ref|ZP_17931277.1| RNA polymerase sigma factor RpoS [Escherichia coli TW07945]
gi|424495050|ref|ZP_17942747.1| RNA polymerase sigma factor RpoS [Escherichia coli TW09195]
gi|424501823|ref|ZP_17948720.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4203]
gi|424515403|ref|ZP_17960076.1| RNA polymerase sigma factor RpoS [Escherichia coli TW14313]
gi|424527505|ref|ZP_17971222.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4421]
gi|424533659|ref|ZP_17977008.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4422]
gi|424539715|ref|ZP_17982659.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4013]
gi|424545811|ref|ZP_17988210.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4402]
gi|424582693|ref|ZP_18022340.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1863]
gi|424763298|ref|ZP_18190776.1| RNA polymerase sigma factor S RpoS [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424773038|ref|ZP_18200119.1| RNA polymerase sigma factor S RpoS [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424815190|ref|ZP_18240341.1| sigma factor RpoS [Escherichia fergusonii ECD227]
gi|424839016|ref|ZP_18263653.1| RNA polymerase sigma factor RpoS [Shigella flexneri 5a str. M90T]
gi|425099366|ref|ZP_18502098.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.4870]
gi|425111477|ref|ZP_18513398.1| RNA polymerase sigma factor RpoS [Escherichia coli 6.0172]
gi|425116270|ref|ZP_18518062.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0566]
gi|425121030|ref|ZP_18522718.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0569]
gi|425127400|ref|ZP_18528569.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0586]
gi|425133134|ref|ZP_18533984.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.2524]
gi|425163766|ref|ZP_18562653.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA506]
gi|425169511|ref|ZP_18567985.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA507]
gi|425175574|ref|ZP_18573694.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA504]
gi|425181605|ref|ZP_18579301.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK1999]
gi|425194644|ref|ZP_18591413.1| RNA polymerase sigma factor RpoS [Escherichia coli NE1487]
gi|425201117|ref|ZP_18597326.1| RNA polymerase sigma factor RpoS [Escherichia coli NE037]
gi|425238112|ref|ZP_18631832.1| RNA polymerase sigma factor RpoS [Escherichia coli TT12B]
gi|425273906|ref|ZP_18665312.1| RNA polymerase sigma factor RpoS [Escherichia coli TW15901]
gi|425279113|ref|ZP_18670346.1| RNA polymerase sigma factor RpoS [Escherichia coli ARS4.2123]
gi|425284435|ref|ZP_18675468.1| RNA polymerase sigma factor RpoS [Escherichia coli TW00353]
gi|425306479|ref|ZP_18696174.1| RNA polymerase sigma factor RpoS [Escherichia coli N1]
gi|425318705|ref|ZP_18707496.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1736]
gi|425324781|ref|ZP_18713149.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1737]
gi|425331145|ref|ZP_18718998.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1846]
gi|425337324|ref|ZP_18724694.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1847]
gi|425343658|ref|ZP_18730549.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1848]
gi|425355765|ref|ZP_18741833.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1850]
gi|425361726|ref|ZP_18747374.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1856]
gi|425374251|ref|ZP_18758895.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1864]
gi|425380919|ref|ZP_18764929.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1865]
gi|425393798|ref|ZP_18776907.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1868]
gi|425399934|ref|ZP_18782641.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1869]
gi|425412410|ref|ZP_18794174.1| RNA polymerase sigma factor RpoS [Escherichia coli NE098]
gi|425418735|ref|ZP_18800006.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK523]
gi|425423556|ref|ZP_18804719.1| RNA polymerase sigma factor RpoS [Escherichia coli 0.1288]
gi|425429993|ref|ZP_18810605.1| RNA polymerase sigma factor RpoS [Escherichia coli 0.1304]
gi|427805897|ref|ZP_18972964.1| RNA polymerase, sigma S (sigma38) factor; synthesis of many growth
phase related proteins [Escherichia coli chi7122]
gi|427810488|ref|ZP_18977553.1| RNA polymerase, sigma S (sigma38) factor; synthesis of many growth
phase related proteins [Escherichia coli]
gi|428954508|ref|ZP_19026306.1| RNA polymerase sigma factor RpoS [Escherichia coli 88.1042]
gi|428972844|ref|ZP_19043182.1| RNA polymerase sigma factor RpoS [Escherichia coli 90.0039]
gi|428991221|ref|ZP_19060212.1| RNA polymerase sigma factor RpoS [Escherichia coli 93.0056]
gi|428997095|ref|ZP_19065693.1| RNA polymerase sigma factor RpoS [Escherichia coli 94.0618]
gi|429009434|ref|ZP_19076939.1| RNA polymerase sigma factor RpoS [Escherichia coli 95.1288]
gi|429021962|ref|ZP_19088487.1| RNA polymerase sigma factor RpoS [Escherichia coli 96.0428]
gi|429027883|ref|ZP_19093887.1| RNA polymerase sigma factor RpoS [Escherichia coli 96.0427]
gi|429051432|ref|ZP_19116000.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.0003]
gi|429056845|ref|ZP_19121159.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.1742]
gi|429068610|ref|ZP_19132075.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.0672]
gi|429074532|ref|ZP_19137785.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.0678]
gi|429720305|ref|ZP_19255232.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429772205|ref|ZP_19304225.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02030]
gi|429777152|ref|ZP_19309126.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02033-1]
gi|429785877|ref|ZP_19317772.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02092]
gi|429791767|ref|ZP_19323621.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02093]
gi|429792615|ref|ZP_19324464.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02281]
gi|429799191|ref|ZP_19330989.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02318]
gi|429802808|ref|ZP_19334568.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02913]
gi|429812604|ref|ZP_19344287.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-03439]
gi|429813152|ref|ZP_19344831.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-04080]
gi|429818359|ref|ZP_19349994.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-03943]
gi|429834138|ref|ZP_19364479.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.0010]
gi|429904711|ref|ZP_19370690.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429908849|ref|ZP_19374813.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429914721|ref|ZP_19380668.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429919751|ref|ZP_19385682.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429925571|ref|ZP_19391484.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429929507|ref|ZP_19395409.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429936046|ref|ZP_19401932.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429941726|ref|ZP_19407600.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429944407|ref|ZP_19410269.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429951965|ref|ZP_19417811.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429955314|ref|ZP_19421146.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432354647|ref|ZP_19597916.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE2]
gi|432359060|ref|ZP_19602278.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE4]
gi|432363909|ref|ZP_19607067.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE5]
gi|432366223|ref|ZP_19609342.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE10]
gi|432373317|ref|ZP_19616354.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE11]
gi|432377917|ref|ZP_19620905.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE12]
gi|432382441|ref|ZP_19625381.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE15]
gi|432388373|ref|ZP_19631255.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE16]
gi|432393191|ref|ZP_19636020.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE21]
gi|432398659|ref|ZP_19641437.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE25]
gi|432402996|ref|ZP_19645746.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE26]
gi|432412869|ref|ZP_19655529.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE39]
gi|432418187|ref|ZP_19660784.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE44]
gi|432423045|ref|ZP_19665587.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE178]
gi|432427266|ref|ZP_19669759.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE181]
gi|432432944|ref|ZP_19675369.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE187]
gi|432437426|ref|ZP_19679813.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE188]
gi|432442168|ref|ZP_19684506.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE189]
gi|432447283|ref|ZP_19689581.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE191]
gi|432450872|ref|ZP_19693132.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE193]
gi|432457767|ref|ZP_19699947.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE201]
gi|432461727|ref|ZP_19703871.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE204]
gi|432466889|ref|ZP_19708975.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE205]
gi|432472042|ref|ZP_19714082.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE206]
gi|432476955|ref|ZP_19718949.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE208]
gi|432482055|ref|ZP_19724009.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE210]
gi|432486492|ref|ZP_19728405.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE212]
gi|432490543|ref|ZP_19732410.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE213]
gi|432496762|ref|ZP_19738557.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE214]
gi|432501184|ref|ZP_19742939.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE216]
gi|432505506|ref|ZP_19747227.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE220]
gi|432515004|ref|ZP_19752225.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE224]
gi|432518824|ref|ZP_19756008.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE228]
gi|432524900|ref|ZP_19762025.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE230]
gi|432527528|ref|ZP_19764616.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE233]
gi|432535100|ref|ZP_19772070.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE234]
gi|432538994|ref|ZP_19775893.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE235]
gi|432544347|ref|ZP_19781187.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE236]
gi|432549837|ref|ZP_19786602.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE237]
gi|432554778|ref|ZP_19791497.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE47]
gi|432559907|ref|ZP_19796574.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE49]
gi|432564996|ref|ZP_19801572.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE51]
gi|432569788|ref|ZP_19806297.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE53]
gi|432574918|ref|ZP_19811393.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE55]
gi|432576969|ref|ZP_19813424.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE56]
gi|432582177|ref|ZP_19818591.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE57]
gi|432589045|ref|ZP_19825399.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE58]
gi|432593921|ref|ZP_19830234.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE60]
gi|432598892|ref|ZP_19835163.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE62]
gi|432603394|ref|ZP_19839636.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE66]
gi|432608588|ref|ZP_19844771.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE67]
gi|432612722|ref|ZP_19848880.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE72]
gi|432617906|ref|ZP_19854016.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE75]
gi|432622939|ref|ZP_19858965.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE76]
gi|432628371|ref|ZP_19864344.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE77]
gi|432632492|ref|ZP_19868415.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE80]
gi|432637953|ref|ZP_19873820.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE81]
gi|432642204|ref|ZP_19878034.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE83]
gi|432647274|ref|ZP_19883060.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE86]
gi|432652229|ref|ZP_19887980.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE87]
gi|432656865|ref|ZP_19892566.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE93]
gi|432661938|ref|ZP_19897577.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE111]
gi|432667198|ref|ZP_19902776.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE116]
gi|432671813|ref|ZP_19907340.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE119]
gi|432675833|ref|ZP_19911288.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE142]
gi|432681249|ref|ZP_19916619.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE143]
gi|432686548|ref|ZP_19921841.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE156]
gi|432687940|ref|ZP_19923220.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE161]
gi|432695511|ref|ZP_19930707.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE162]
gi|432700133|ref|ZP_19935284.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE169]
gi|432705494|ref|ZP_19940592.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE171]
gi|432706973|ref|ZP_19942053.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE6]
gi|432714451|ref|ZP_19949484.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE8]
gi|432719849|ref|ZP_19954815.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE9]
gi|432724179|ref|ZP_19959095.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE17]
gi|432728761|ref|ZP_19963637.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE18]
gi|432733486|ref|ZP_19968312.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE45]
gi|432738192|ref|ZP_19972947.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE42]
gi|432742445|ref|ZP_19977162.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE23]
gi|432746698|ref|ZP_19981361.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE43]
gi|432751157|ref|ZP_19985757.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE29]
gi|432755596|ref|ZP_19990142.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE22]
gi|432760572|ref|ZP_19995063.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE46]
gi|432766086|ref|ZP_20000508.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE48]
gi|432775782|ref|ZP_20010049.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE54]
gi|432779676|ref|ZP_20013898.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE59]
gi|432784619|ref|ZP_20018797.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE63]
gi|432788668|ref|ZP_20022796.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE65]
gi|432793894|ref|ZP_20027976.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE78]
gi|432795395|ref|ZP_20029455.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE79]
gi|432802928|ref|ZP_20036884.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE84]
gi|432806895|ref|ZP_20040812.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE91]
gi|432810431|ref|ZP_20044309.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE101]
gi|432816434|ref|ZP_20050215.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE115]
gi|432822104|ref|ZP_20055794.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE118]
gi|432823614|ref|ZP_20057284.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE123]
gi|432828355|ref|ZP_20061976.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE135]
gi|432835673|ref|ZP_20069209.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE136]
gi|432840567|ref|ZP_20074030.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE140]
gi|432845721|ref|ZP_20078455.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE141]
gi|432853866|ref|ZP_20082411.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE144]
gi|432863819|ref|ZP_20087660.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE146]
gi|432870176|ref|ZP_20090633.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE147]
gi|432876594|ref|ZP_20094512.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE154]
gi|432887830|ref|ZP_20101758.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE158]
gi|432889981|ref|ZP_20103027.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE165]
gi|432906098|ref|ZP_20114826.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE194]
gi|432920738|ref|ZP_20124327.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE173]
gi|432928422|ref|ZP_20129542.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE175]
gi|432935641|ref|ZP_20134955.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE184]
gi|432939178|ref|ZP_20137328.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE183]
gi|432948798|ref|ZP_20143721.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE196]
gi|432956367|ref|ZP_20148094.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE197]
gi|432963078|ref|ZP_20152497.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE202]
gi|432968790|ref|ZP_20157703.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE203]
gi|432972858|ref|ZP_20161722.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE207]
gi|432974856|ref|ZP_20163691.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE209]
gi|432982071|ref|ZP_20170844.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE211]
gi|432986461|ref|ZP_20175179.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE215]
gi|432991810|ref|ZP_20180473.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE217]
gi|432996411|ref|ZP_20184995.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE218]
gi|433000982|ref|ZP_20189504.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE223]
gi|433006196|ref|ZP_20194622.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE227]
gi|433008864|ref|ZP_20197278.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE229]
gi|433014983|ref|ZP_20203322.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE104]
gi|433024566|ref|ZP_20212545.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE106]
gi|433034556|ref|ZP_20222260.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE112]
gi|433039704|ref|ZP_20227300.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE113]
gi|433044274|ref|ZP_20231763.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE117]
gi|433049123|ref|ZP_20236466.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE120]
gi|433054374|ref|ZP_20241544.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE122]
gi|433059190|ref|ZP_20246230.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE124]
gi|433064145|ref|ZP_20251059.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE125]
gi|433069021|ref|ZP_20255802.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE128]
gi|433073933|ref|ZP_20260581.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE129]
gi|433078889|ref|ZP_20265413.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE131]
gi|433083613|ref|ZP_20270067.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE133]
gi|433088389|ref|ZP_20274756.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE137]
gi|433093088|ref|ZP_20279349.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE138]
gi|433097513|ref|ZP_20283694.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE139]
gi|433102286|ref|ZP_20288363.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE145]
gi|433106957|ref|ZP_20292927.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE148]
gi|433111946|ref|ZP_20297805.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE150]
gi|433116594|ref|ZP_20302381.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE153]
gi|433121272|ref|ZP_20306938.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE157]
gi|433126264|ref|ZP_20311817.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE160]
gi|433131257|ref|ZP_20316689.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE163]
gi|433135918|ref|ZP_20321256.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE166]
gi|433140332|ref|ZP_20325583.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE167]
gi|433145302|ref|ZP_20330441.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE168]
gi|433150251|ref|ZP_20335266.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE174]
gi|433154814|ref|ZP_20339750.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE176]
gi|433159759|ref|ZP_20344590.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE177]
gi|433164699|ref|ZP_20349432.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE179]
gi|433169686|ref|ZP_20354309.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE180]
gi|433174615|ref|ZP_20359132.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE232]
gi|433179563|ref|ZP_20363954.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE82]
gi|433184408|ref|ZP_20368650.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE85]
gi|433189486|ref|ZP_20373579.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE88]
gi|433194765|ref|ZP_20378747.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE90]
gi|433199441|ref|ZP_20383333.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE94]
gi|433204467|ref|ZP_20388226.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE95]
gi|433208828|ref|ZP_20392500.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE97]
gi|433213612|ref|ZP_20397200.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE99]
gi|433322431|ref|ZP_20399874.1| RNA polymerase sigma factor RpoS [Escherichia coli J96]
gi|442603619|ref|ZP_21018490.1| RNA polymerase sigma factor RpoS [Escherichia coli Nissle 1917]
gi|443618768|ref|YP_007382624.1| RNA polymerase sigma factor RpoS [Escherichia coli APEC O78]
gi|444926310|ref|ZP_21245595.1| RNA polymerase sigma factor RpoS [Escherichia coli 09BKT078844]
gi|444964777|ref|ZP_21282377.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.1775]
gi|445008455|ref|ZP_21324694.1| RNA polymerase sigma factor RpoS [Escherichia coli PA47]
gi|445019463|ref|ZP_21335426.1| RNA polymerase sigma factor RpoS [Escherichia coli PA8]
gi|445030266|ref|ZP_21345939.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.1781]
gi|445046541|ref|ZP_21361791.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.4880]
gi|445052092|ref|ZP_21367133.1| RNA polymerase sigma factor RpoS [Escherichia coli 95.0083]
gi|445057815|ref|ZP_21372673.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.0670]
gi|450220766|ref|ZP_21896442.1| RNA polymerase sigma factor S RpoS [Escherichia coli O08]
gi|452969439|ref|ZP_21967666.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4009]
gi|10197692|gb|AAG14975.1|AF242208_8 alternative sigma factor [Escherichia coli]
gi|10197707|gb|AAG14988.1|AF242210_7 alternative sigma factor [Escherichia coli]
gi|10197712|gb|AAG14992.1|AF242211_4 alternative sigma factor [Escherichia coli]
gi|15529697|gb|AAL01412.1|AF410776_1 RpoS [Escherichia coli]
gi|15529700|gb|AAL01414.1|AF410777_1 RpoS [Escherichia coli]
gi|4887559|emb|CAB43502.1| alternative sigma factor, sigma 38 [Escherichia coli]
gi|13363066|dbj|BAB37018.1| sigma factor RpoS [Escherichia coli O157:H7 str. Sakai]
gi|37924617|gb|AAP59881.1| sigma S [Shigella boydii]
gi|73856784|gb|AAZ89491.1| RNA polymerase, sigma S (sigma38) factor [Shigella sonnei Ss046]
gi|83272618|gb|ABC00794.1| RpoS [Escherichia coli]
gi|83272620|gb|ABC00795.1| RpoS [Escherichia coli]
gi|83272622|gb|ABC00796.1| RpoS [Escherichia coli]
gi|83272626|gb|ABC00798.1| RpoS [Escherichia coli]
gi|110344474|gb|ABG70711.1| RNA polymerase sigma factor RpoS [Escherichia coli 536]
gi|110616176|gb|ABF04843.1| RNA polymerase sigma factor [Shigella flexneri 5 str. 8401]
gi|134036992|gb|ABO47833.1| sigma 38 factor [Escherichia coli]
gi|134037004|gb|ABO47841.1| sigma 38 factor [Escherichia coli]
gi|134037007|gb|ABO47843.1| sigma 38 factor [Escherichia coli]
gi|134037010|gb|ABO47845.1| sigma 38 factor [Escherichia coli]
gi|134037013|gb|ABO47847.1| sigma 38 factor [Escherichia coli]
gi|157067869|gb|ABV07124.1| RNA polymerase sigma factor RpoS [Escherichia coli HS]
gi|157079366|gb|ABV19074.1| RNA polymerase sigma factor RpoS [Escherichia coli E24377A]
gi|169753941|gb|ACA76640.1| RNA polymerase, sigma 70 subunit, RpoD family [Escherichia coli
ATCC 8739]
gi|170521878|gb|ACB20056.1| RNA polymerase sigma factor RpoS [Escherichia coli SMS-3-5]
gi|188015788|gb|EDU53910.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4113]
gi|189003307|gb|EDU72293.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4076]
gi|189357252|gb|EDU75671.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4401]
gi|189372241|gb|EDU90657.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC869]
gi|190903146|gb|EDV62869.1| RNA polymerase sigma factor RpoS [Escherichia coli B7A]
gi|190908434|gb|EDV68023.1| RNA polymerase sigma factor RpoS [Escherichia coli F11]
gi|192927345|gb|EDV81964.1| RNA polymerase sigma factor RpoS [Escherichia coli E22]
gi|192957034|gb|EDV87485.1| RNA polymerase sigma factor RpoS [Escherichia coli E110019]
gi|194420101|gb|EDX36179.1| RNA polymerase sigma factor RpoS [Shigella dysenteriae 1012]
gi|194422116|gb|EDX38119.1| RNA polymerase sigma factor RpoS [Escherichia coli 101-1]
gi|208733316|gb|EDZ82003.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4045]
gi|209157291|gb|ACI34724.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC4115]
gi|209747660|gb|ACI72137.1| sigma factor RpoS [Escherichia coli]
gi|209747662|gb|ACI72138.1| sigma factor RpoS [Escherichia coli]
gi|209747664|gb|ACI72139.1| sigma factor RpoS [Escherichia coli]
gi|209913443|dbj|BAG78517.1| RNA polymerase sigma factor S RpoS [Escherichia coli SE11]
gi|217319015|gb|EEC27440.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
TW14588]
gi|218353071|emb|CAU98896.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli 55989]
gi|218366503|emb|CAR04255.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli S88]
gi|218433332|emb|CAR14232.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli UMN026]
gi|222034438|emb|CAP77180.1| RNA polymerase sigma factor rpoS [Escherichia coli LF82]
gi|242378296|emb|CAQ33073.1| RNA polymerase, sigma S (sigma 38) factor, subunit of RNA
polymerase sigma 38 [Escherichia coli BL21(DE3)]
gi|253323447|gb|ACT28049.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974573|gb|ACT40244.1| RNA polymerase sigma factor [Escherichia coli B str. REL606]
gi|253978740|gb|ACT44410.1| RNA polymerase sigma factor [Escherichia coli BL21(DE3)]
gi|257760535|dbj|BAI32032.1| RNA polymerase, sigma S factor [Escherichia coli O103:H2 str.
12009]
gi|257765776|dbj|BAI37271.1| RNA polymerase, sigma S factor [Escherichia coli O111:H- str.
11128]
gi|281179747|dbj|BAI56077.1| RNA polymerase sigma factor S RpoS [Escherichia coli SE15]
gi|290763941|gb|ADD57902.1| RNA polymerase sigma factor [Escherichia coli O55:H7 str. CB9615]
gi|291322152|gb|EFE61581.1| RNA polymerase sigma factor RpoS [Escherichia coli B088]
gi|291426239|gb|EFE99271.1| RNA polymerase sigma factor RpoS [Escherichia coli FVEC1412]
gi|291432176|gb|EFF05158.1| RNA polymerase sigma factor RpoS [Escherichia coli B185]
gi|291468867|gb|EFF11358.1| RNA polymerase sigma factor RpoS [Escherichia coli B354]
gi|298277110|gb|EFI18626.1| RNA polymerase sigma factor rpoS [Escherichia coli FVEC1302]
gi|299879329|gb|EFI87540.1| RNA polymerase sigma factor RpoS [Escherichia coli MS 196-1]
gi|300356491|gb|EFJ72361.1| RNA polymerase sigma factor RpoS [Escherichia coli MS 198-1]
gi|305854415|gb|EFM54853.1| RNA polymerase sigma factor RpoS [Escherichia coli NC101]
gi|306907266|gb|EFN37772.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Escherichia coli
W]
gi|307554720|gb|ADN47495.1| sigma factor RpoS [Escherichia coli ABU 83972]
gi|307625683|gb|ADN69987.1| RNA polymerase sigma factor RpoS [Escherichia coli UM146]
gi|309703100|emb|CBJ02432.1| RNA polymerase sigma factor (sigma-38) [Escherichia coli ETEC
H10407]
gi|310332990|gb|EFQ00204.1| RNA polymerase sigma factor RpoS [Escherichia coli 1827-70]
gi|312947273|gb|ADR28100.1| RNA polymerase sigma factor RpoS [Escherichia coli O83:H1 str. NRG
857C]
gi|315062022|gb|ADT76349.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli W]
gi|315615130|gb|EFU95767.1| RNA polymerase sigma factor RpoS [Escherichia coli 3431]
gi|320186525|gb|EFW61253.1| RNA polymerase sigma factor RpoS [Shigella flexneri CDC 796-83]
gi|320189070|gb|EFW63729.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
EC1212]
gi|320194880|gb|EFW69509.1| RNA polymerase sigma factor RpoS [Escherichia coli WV_060327]
gi|320202392|gb|EFW76962.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4100B]
gi|320651231|gb|EFX19666.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H- str. H
2687]
gi|320656781|gb|EFX24669.1| RNA polymerase sigma factor RpoS [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320667375|gb|EFX34333.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
LSU-61]
gi|323159951|gb|EFZ45921.1| RNA polymerase sigma factor RpoS [Escherichia coli E128010]
gi|323167243|gb|EFZ52960.1| RNA polymerase sigma factor RpoS [Shigella sonnei 53G]
gi|323172966|gb|EFZ58597.1| RNA polymerase sigma factor RpoS [Escherichia coli LT-68]
gi|323180167|gb|EFZ65719.1| RNA polymerase sigma factor RpoS [Escherichia coli OK1180]
gi|323183273|gb|EFZ68670.1| RNA polymerase sigma factor RpoS [Escherichia coli OK1357]
gi|323188842|gb|EFZ74127.1| RNA polymerase sigma factor RpoS [Escherichia coli RN587/1]
gi|323935702|gb|EGB32016.1| RNA polymerase sigma protein RpoS [Escherichia coli E1520]
gi|323941428|gb|EGB37611.1| RNA polymerase sigma proteinRpoS [Escherichia coli E482]
gi|323946373|gb|EGB42401.1| RNA polymerase sigma protein RpoS [Escherichia coli H120]
gi|323951037|gb|EGB46913.1| RNA polymerase sigma proteinRpoS [Escherichia coli H252]
gi|323957044|gb|EGB52769.1| RNA polymerase sigma proteinRpoS [Escherichia coli H263]
gi|323960599|gb|EGB56225.1| RNA polymerase sigma proteinRpoS [Escherichia coli H489]
gi|323966893|gb|EGB62322.1| RNA polymerase sigma proteinRpoS [Escherichia coli M863]
gi|323971530|gb|EGB66763.1| RNA polymerase sigma proteinRpoS [Escherichia coli TA007]
gi|323978651|gb|EGB73733.1| RNA polymerase sigma proteinRpoS [Escherichia coli TW10509]
gi|324111374|gb|EGC05356.1| RNA polymerase sigma proteinRpoS [Escherichia fergusonii B253]
gi|324119995|gb|EGC13873.1| RNA polymerase sigma proteinRpoS [Escherichia coli E1167]
gi|325496210|gb|EGC94069.1| sigma factor RpoS [Escherichia fergusonii ECD227]
gi|326339191|gb|EGD63006.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
1044]
gi|326342926|gb|EGD66694.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
1125]
gi|330908777|gb|EGH37291.1| RNA polymerase sigma factor RpoS [Escherichia coli AA86]
gi|331053437|gb|EGI25466.1| RNA polymerase sigma factor RpoS [Escherichia coli TA206]
gi|331058228|gb|EGI30209.1| RNA polymerase sigma factor RpoS [Escherichia coli TA143]
gi|331063148|gb|EGI35061.1| RNA polymerase sigma factor RpoS [Escherichia coli TA271]
gi|331077975|gb|EGI49181.1| RNA polymerase sigma factor RpoS [Escherichia coli H299]
gi|332344623|gb|AEE57957.1| RNA polymerase sigma factor RpoS [Escherichia coli UMNK88]
gi|333970809|gb|AEG37614.1| RpoS, RNA polymerase sigma factor [Escherichia coli NA114]
gi|338769172|gb|EGP23953.1| RNA polymerase sigma factor rpoS [Escherichia coli PCN033]
gi|339416381|gb|AEJ58053.1| RNA polymerase sigma factor RpoS [Escherichia coli UMNF18]
gi|340733659|gb|EGR62790.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
01-09591]
gi|340739170|gb|EGR73406.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
LB226692]
gi|341920096|gb|EGT69705.1| hypothetical protein C22711_3735 [Escherichia coli O104:H4 str.
C227-11]
gi|345335157|gb|EGW67596.1| RNA polymerase sigma factor RpoS [Escherichia coli 2534-86]
gi|345356568|gb|EGW88769.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_DG131-3]
gi|345361222|gb|EGW93383.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_EH250]
gi|345371610|gb|EGX03579.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_MHI813]
gi|345374631|gb|EGX06582.1| RNA polymerase sigma factor RpoS [Escherichia coli G58-1]
gi|345386620|gb|EGX16453.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_S1191]
gi|345392919|gb|EGX22698.1| RNA polymerase sigma factor RpoS [Escherichia coli TX1999]
gi|349739197|gb|AEQ13903.1| RNA polymerase, sigma S (sigma 38) factor [Escherichia coli O7:K1
str. CE10]
gi|350540834|gb|AEQ27689.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540836|gb|AEQ27690.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540838|gb|AEQ27691.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540840|gb|AEQ27692.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540844|gb|AEQ27694.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540846|gb|AEQ27695.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540848|gb|AEQ27696.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540850|gb|AEQ27697.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540852|gb|AEQ27698.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540854|gb|AEQ27699.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540856|gb|AEQ27700.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540862|gb|AEQ27703.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540870|gb|AEQ27707.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540872|gb|AEQ27708.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540874|gb|AEQ27709.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540876|gb|AEQ27710.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540878|gb|AEQ27711.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540880|gb|AEQ27712.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540882|gb|AEQ27713.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540884|gb|AEQ27714.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540886|gb|AEQ27715.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540888|gb|AEQ27716.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540890|gb|AEQ27717.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540892|gb|AEQ27718.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540894|gb|AEQ27719.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540896|gb|AEQ27720.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540898|gb|AEQ27721.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540900|gb|AEQ27722.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540904|gb|AEQ27724.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540906|gb|AEQ27725.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540908|gb|AEQ27726.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540910|gb|AEQ27727.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540912|gb|AEQ27728.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540914|gb|AEQ27729.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540916|gb|AEQ27730.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|350540920|gb|AEQ27732.1| RNA polymerase sigma 38 factor [Escherichia coli]
gi|354862566|gb|EHF23004.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
C236-11]
gi|354867850|gb|EHF28272.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
C227-11]
gi|354873850|gb|EHF34227.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
09-7901]
gi|354880531|gb|EHF40867.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-3677]
gi|354888365|gb|EHF48624.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4404]
gi|354892273|gb|EHF52482.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4522]
gi|354893479|gb|EHF53682.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354896282|gb|EHF56453.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4623]
gi|354897659|gb|EHF57816.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354911511|gb|EHF71515.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354914635|gb|EHF74618.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916417|gb|EHF76389.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-4632 C4]
gi|371595154|gb|EHN84006.1| RNA polymerase sigma factor rpoS [Escherichia coli H494]
gi|371600497|gb|EHN89269.1| RNA polymerase sigma factor rpoS [Escherichia coli TA124]
gi|371605742|gb|EHN94350.1| RNA polymerase sigma factor rpoS [Escherichia coli H397]
gi|371611332|gb|EHN99856.1| RNA polymerase sigma factor rpoS [Escherichia coli E101]
gi|371615557|gb|EHO03956.1| RNA polymerase sigma factor rpoS [Escherichia coli B093]
gi|373247323|gb|EHP66769.1| RNA polymerase sigma factor rpoS [Escherichia coli 4_1_47FAA]
gi|374360087|gb|AEZ41794.1| RNA polymerase sigma factor RpoS [Escherichia coli O55:H7 str.
RM12579]
gi|375321218|gb|EHS67077.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H43 str.
T22]
gi|377855643|gb|EHU20510.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC1D]
gi|377891309|gb|EHU55761.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC3B]
gi|377904047|gb|EHU68334.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC3C]
gi|377924891|gb|EHU88832.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4A]
gi|377929030|gb|EHU92930.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4B]
gi|377940347|gb|EHV04097.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4D]
gi|377946449|gb|EHV10129.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4E]
gi|377956302|gb|EHV19852.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC4F]
gi|377964948|gb|EHV28380.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC5B]
gi|377973110|gb|EHV36454.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC5C]
gi|377982297|gb|EHV45549.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC5E]
gi|377995672|gb|EHV58788.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6C]
gi|378008439|gb|EHV71398.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC6E]
gi|378014405|gb|EHV77310.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7A]
gi|378022186|gb|EHV84873.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7C]
gi|378027435|gb|EHV90064.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7D]
gi|378031495|gb|EHV94082.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7B]
gi|378037511|gb|EHW00038.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC7E]
gi|378059585|gb|EHW21784.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC8D]
gi|378082341|gb|EHW44286.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC9C]
gi|378098956|gb|EHW60681.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC10A]
gi|378126524|gb|EHW87918.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC10E]
gi|378129448|gb|EHW90819.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC10F]
gi|378147582|gb|EHX08729.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11D]
gi|378149616|gb|EHX10738.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11C]
gi|378156711|gb|EHX17757.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC11E]
gi|378163526|gb|EHX24478.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12B]
gi|378168742|gb|EHX29645.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12C]
gi|378180679|gb|EHX41360.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12D]
gi|378185710|gb|EHX46334.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC12E]
gi|378198460|gb|EHX58930.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13B]
gi|378199151|gb|EHX59619.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13C]
gi|378201552|gb|EHX61995.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13D]
gi|378211512|gb|EHX71850.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC13E]
gi|378215651|gb|EHX75946.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC14A]
gi|378230092|gb|EHX90219.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC14D]
gi|378243939|gb|EHY03885.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC15B]
gi|378258353|gb|EHY18176.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC15E]
gi|380347007|gb|EIA35296.1| RNA polymerase sigma factor RpoS [Escherichia coli SCI-07]
gi|383391873|gb|AFH16831.1| RNA polymerase sigma factor RpoS [Escherichia coli KO11FL]
gi|383406289|gb|AFH12532.1| RNA polymerase sigma factor RpoS [Escherichia coli W]
gi|383468068|gb|EID63089.1| RNA polymerase sigma factor RpoS [Shigella flexneri 5a str. M90T]
gi|383475727|gb|EID67681.1| RNA polymerase sigma factor RpoS [Escherichia coli W26]
gi|384471860|gb|EIE55927.1| RNA polymerase sigma factor RpoS [Escherichia coli AI27]
gi|385154260|gb|EIF16275.1| RNA polymerase sigma factor RpoS [Escherichia coli O32:H37 str. P4]
gi|385538373|gb|EIF85235.1| RNA polymerase sigma factor rpoS [Escherichia coli M919]
gi|385707038|gb|EIG44070.1| RNA polymerase sigma factor rpoS [Escherichia coli H730]
gi|385711032|gb|EIG48000.1| RNA polymerase sigma factor rpoS [Escherichia coli B799]
gi|386120978|gb|EIG69596.1| RNA polymerase sigma factor rpoS [Escherichia sp. 4_1_40B]
gi|386151709|gb|EIH02998.1| RNA polymerase sigma factor RpoS [Escherichia coli 5.0588]
gi|386156448|gb|EIH12793.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.0259]
gi|386177332|gb|EIH54811.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.2608]
gi|386187726|gb|EIH76539.1| RNA polymerase sigma factor RpoS [Escherichia coli 4.0522]
gi|386214419|gb|EII24842.1| RNA polymerase sigma factor RpoS [Escherichia coli 9.0111]
gi|386218345|gb|EII34828.1| RNA polymerase sigma factor RpoS [Escherichia coli 4.0967]
gi|386223789|gb|EII46138.1| RNA polymerase sigma factor RpoS [Escherichia coli 2.3916]
gi|386228894|gb|EII56250.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.3884]
gi|386236058|gb|EII68034.1| RNA polymerase sigma factor RpoS [Escherichia coli 2.4168]
gi|386240068|gb|EII76993.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.2303]
gi|386251029|gb|EII97196.1| RNA polymerase sigma factor RpoS [Escherichia coli TW07793]
gi|386254124|gb|EIJ03814.1| RNA polymerase sigma factor RpoS [Escherichia coli B41]
gi|386260476|gb|EIJ15950.1| RNA polymerase sigma factor RpoS [Escherichia coli 900105 (10e)]
gi|388346052|gb|EIL11795.1| RNA polymerase sigma factor RpoS [Escherichia coli O103:H25 str.
CVM9340]
gi|388346653|gb|EIL12363.1| RNA polymerase sigma factor RpoS [Escherichia coli O103:H2 str.
CVM9450]
gi|388349663|gb|EIL15131.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H11 str.
CVM9534]
gi|388365386|gb|EIL29180.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9570]
gi|388369111|gb|EIL32731.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9574]
gi|388372244|gb|EIL35682.1| RNA polymerase sigma factor RpoS [Escherichia coli O26:H11 str.
CVM9942]
gi|388376991|gb|EIL39839.1| RNA polymerase sigma factor [Escherichia coli O26:H11 str.
CVM10026]
gi|388382351|gb|EIL44206.1| RNA polymerase sigma factor RpoS [Escherichia coli KD1]
gi|388385453|gb|EIL47133.1| RNA polymerase sigma factor RpoS [Escherichia coli KD2]
gi|388396192|gb|EIL57320.1| RNA polymerase sigma factor RpoS [Escherichia coli 541-15]
gi|388406515|gb|EIL66918.1| RNA polymerase sigma factor RpoS [Escherichia coli 75]
gi|388407922|gb|EIL68283.1| RNA polymerase sigma factor RpoS [Escherichia coli 576-1]
gi|388407987|gb|EIL68347.1| RNA polymerase sigma factor RpoS [Escherichia coli 541-1]
gi|388421212|gb|EIL80830.1| RNA polymerase sigma factor RpoS [Escherichia coli CUMT8]
gi|390642484|gb|EIN21879.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA505]
gi|390659156|gb|EIN36923.1| RNA polymerase sigma factor RpoS [Escherichia coli 93-001]
gi|390662607|gb|EIN40196.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK1990]
gi|390679566|gb|EIN55461.1| RNA polymerase sigma factor RpoS [Escherichia coli PA5]
gi|390699572|gb|EIN73915.1| RNA polymerase sigma factor RpoS [Escherichia coli PA15]
gi|390699992|gb|EIN74328.1| RNA polymerase sigma factor RpoS [Escherichia coli PA14]
gi|390713464|gb|EIN86402.1| RNA polymerase sigma factor RpoS [Escherichia coli PA22]
gi|390780456|gb|EIO48156.1| RNA polymerase sigma factor RpoS [Escherichia coli TW06591]
gi|390788528|gb|EIO55994.1| RNA polymerase sigma factor RpoS [Escherichia coli TW07945]
gi|390789001|gb|EIO56466.1| RNA polymerase sigma factor RpoS [Escherichia coli TW10246]
gi|390795354|gb|EIO62638.1| RNA polymerase sigma factor RpoS [Escherichia coli TW11039]
gi|390824711|gb|EIO90668.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4203]
gi|390828375|gb|EIO94044.1| RNA polymerase sigma factor RpoS [Escherichia coli TW09195]
gi|390844951|gb|EIP08638.1| RNA polymerase sigma factor RpoS [Escherichia coli TW14313]
gi|390849672|gb|EIP13094.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4421]
gi|390860279|gb|EIP22601.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4422]
gi|390864353|gb|EIP26461.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4013]
gi|390869755|gb|EIP31383.1| RNA polymerase sigma factor RpoS [Escherichia coli EC4402]
gi|390906762|gb|EIP65631.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1734]
gi|390917819|gb|EIP76235.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1863]
gi|391248736|gb|EIQ07974.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-1770]
gi|391249191|gb|EIQ08428.1| RNA polymerase sigma factor RpoS [Shigella flexneri CCH060]
gi|391267748|gb|EIQ26679.1| RNA polymerase sigma factor RpoS [Shigella boydii 965-58]
gi|391304433|gb|EIQ62246.1| RNA polymerase sigma factor RpoS [Escherichia coli EPECa12]
gi|391311311|gb|EIQ68947.1| RNA polymerase sigma factor RpoS [Escherichia coli EPEC C342-62]
gi|394380609|gb|EJE58351.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9602]
gi|394383434|gb|EJE61034.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H8 str.
CVM9634]
gi|394384565|gb|EJE62124.1| RNA polymerase sigma factor S RpoS [Escherichia coli O26:H11 str.
CVM10224]
gi|394407291|gb|EJE82153.1| RNA polymerase sigma factor RpoS [Escherichia coli O26:H11 str.
CVM10021]
gi|394412454|gb|EJE86586.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H11 str.
CVM9553]
gi|394423283|gb|EJE96547.1| RNA polymerase sigma factor RpoS [Escherichia coli O111:H11 str.
CVM9455]
gi|394425655|gb|EJE98591.1| RNA polymerase sigma factor RpoS [Escherichia coli O26:H11 str.
CVM9952]
gi|397784089|gb|EJK94945.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_O31]
gi|397897948|gb|EJL14345.1| RNA polymerase sigma factor RpoS [Shigella sonnei str. Moseley]
gi|404290498|gb|EEH71427.2| RNA polymerase sigma factor rpoS [Escherichia sp. 1_1_43]
gi|406776456|gb|AFS55880.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407053025|gb|AFS73076.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
2011C-3493]
gi|407066645|gb|AFS87692.1| RNA polymerase sigma factor RpoS [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408063735|gb|EKG98224.1| RNA polymerase sigma factor RpoS [Escherichia coli PA7]
gi|408065646|gb|EKH00116.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK920]
gi|408078105|gb|EKH12278.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA506]
gi|408081489|gb|EKH15496.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA507]
gi|408090169|gb|EKH23446.1| RNA polymerase sigma factor RpoS [Escherichia coli FDA504]
gi|408096600|gb|EKH29535.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK1999]
gi|408107746|gb|EKH39816.1| RNA polymerase sigma factor RpoS [Escherichia coli NE1487]
gi|408114218|gb|EKH45780.1| RNA polymerase sigma factor RpoS [Escherichia coli NE037]
gi|408153861|gb|EKH82231.1| RNA polymerase sigma factor RpoS [Escherichia coli TT12B]
gi|408192147|gb|EKI17731.1| RNA polymerase sigma factor RpoS [Escherichia coli TW15901]
gi|408199925|gb|EKI25113.1| RNA polymerase sigma factor RpoS [Escherichia coli ARS4.2123]
gi|408201067|gb|EKI26240.1| RNA polymerase sigma factor RpoS [Escherichia coli TW00353]
gi|408227272|gb|EKI50869.1| RNA polymerase sigma factor RpoS [Escherichia coli N1]
gi|408237317|gb|EKI60177.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1736]
gi|408241421|gb|EKI64068.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1737]
gi|408245960|gb|EKI68308.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1846]
gi|408254442|gb|EKI75965.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1847]
gi|408258002|gb|EKI79290.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1848]
gi|408273208|gb|EKI93274.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1850]
gi|408276077|gb|EKI96010.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1856]
gi|408290025|gb|EKJ08762.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1864]
gi|408295381|gb|EKJ13711.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1865]
gi|408306601|gb|EKJ23967.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1868]
gi|408317662|gb|EKJ33892.1| RNA polymerase sigma factor RpoS [Escherichia coli EC1869]
gi|408325588|gb|EKJ41463.1| RNA polymerase sigma factor RpoS [Escherichia coli NE098]
gi|408335843|gb|EKJ50681.1| RNA polymerase sigma factor RpoS [Escherichia coli FRIK523]
gi|408342419|gb|EKJ56846.1| RNA polymerase sigma factor RpoS [Escherichia coli 0.1288]
gi|408345231|gb|EKJ59573.1| RNA polymerase sigma factor RpoS [Escherichia coli 0.1304]
gi|408457652|gb|EKJ81446.1| RNA polymerase sigma factor RpoS [Escherichia coli AD30]
gi|408547991|gb|EKK25376.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.4870]
gi|408549466|gb|EKK26826.1| RNA polymerase sigma factor RpoS [Escherichia coli 6.0172]
gi|408566200|gb|EKK42278.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0566]
gi|408567413|gb|EKK43471.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0569]
gi|408567479|gb|EKK43535.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0586]
gi|408580537|gb|EKK55941.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.2524]
gi|408600091|gb|EKK73950.1| RNA polymerase sigma factor RpoS [Escherichia coli 8.0416]
gi|408611542|gb|EKK84902.1| RNA polymerase sigma factor RpoS [Escherichia coli 10.0821]
gi|412964079|emb|CCK48005.1| RNA polymerase, sigma S (sigma38) factor; synthesis of many growth
phase related proteins [Escherichia coli chi7122]
gi|412970667|emb|CCJ45317.1| RNA polymerase, sigma S (sigma38) factor; synthesis of many growth
phase related proteins [Escherichia coli]
gi|421937287|gb|EKT94904.1| RNA polymerase sigma factor S RpoS [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421940027|gb|EKT97507.1| RNA polymerase sigma factor S RpoS [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427203255|gb|EKV73560.1| RNA polymerase sigma factor RpoS [Escherichia coli 88.1042]
gi|427227111|gb|EKV95691.1| RNA polymerase sigma factor RpoS [Escherichia coli 90.0039]
gi|427240386|gb|EKW07839.1| RNA polymerase sigma factor RpoS [Escherichia coli 93.0056]
gi|427244612|gb|EKW11925.1| RNA polymerase sigma factor RpoS [Escherichia coli 94.0618]
gi|427263381|gb|EKW29140.1| RNA polymerase sigma factor RpoS [Escherichia coli 95.1288]
gi|427275458|gb|EKW40073.1| RNA polymerase sigma factor RpoS [Escherichia coli 96.0428]
gi|427278161|gb|EKW42651.1| RNA polymerase sigma factor RpoS [Escherichia coli 96.0427]
gi|427299703|gb|EKW62672.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.0003]
gi|427311308|gb|EKW73516.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.1742]
gi|427318602|gb|EKW80465.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.0672]
gi|427327006|gb|EKW88407.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.0678]
gi|429254578|gb|EKY38989.1| RNA polymerase sigma factor RpoS [Escherichia coli 97.0010]
gi|429347407|gb|EKY84180.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02092]
gi|429358443|gb|EKY95112.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02030]
gi|429360188|gb|EKY96847.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02033-1]
gi|429360499|gb|EKY97157.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02093]
gi|429363867|gb|EKZ00492.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02318]
gi|429375912|gb|EKZ12444.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02281]
gi|429377830|gb|EKZ14345.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-03439]
gi|429389475|gb|EKZ25895.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-02913]
gi|429393644|gb|EKZ30035.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-03943]
gi|429403313|gb|EKZ39597.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
11-04080]
gi|429405800|gb|EKZ42064.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429408681|gb|EKZ44916.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429413117|gb|EKZ49306.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429415846|gb|EKZ52004.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429419527|gb|EKZ55662.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429431006|gb|EKZ67056.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429435042|gb|EKZ71062.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429437268|gb|EKZ73275.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429442385|gb|EKZ78342.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429446535|gb|EKZ82463.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429450740|gb|EKZ86633.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429456213|gb|EKZ92059.1| RNA polymerase sigma factor rpoS [Escherichia coli O104:H4 str.
Ec12-0466]
gi|430873555|gb|ELB97121.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE2]
gi|430875581|gb|ELB99116.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE4]
gi|430884365|gb|ELC07305.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE5]
gi|430892494|gb|ELC14985.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE10]
gi|430894824|gb|ELC17108.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE11]
gi|430897502|gb|ELC19704.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE12]
gi|430904955|gb|ELC26636.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE16]
gi|430906182|gb|ELC27783.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE15]
gi|430914237|gb|ELC35340.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE25]
gi|430917454|gb|ELC38501.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE21]
gi|430924587|gb|ELC45299.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE26]
gi|430934329|gb|ELC54696.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE39]
gi|430938028|gb|ELC58277.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE44]
gi|430943318|gb|ELC63436.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE178]
gi|430951126|gb|ELC70346.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE187]
gi|430954302|gb|ELC73181.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE181]
gi|430961599|gb|ELC79606.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE188]
gi|430965416|gb|ELC82837.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE189]
gi|430972129|gb|ELC89127.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE191]
gi|430978806|gb|ELC95607.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE193]
gi|430981052|gb|ELC97792.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE201]
gi|430988001|gb|ELD04514.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE204]
gi|430992686|gb|ELD09055.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE205]
gi|430996673|gb|ELD12948.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE206]
gi|431004105|gb|ELD19337.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE208]
gi|431005726|gb|ELD20740.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE210]
gi|431015015|gb|ELD28579.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE212]
gi|431019244|gb|ELD32651.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE213]
gi|431022455|gb|ELD35716.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE214]
gi|431027569|gb|ELD40631.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE216]
gi|431037022|gb|ELD48010.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE220]
gi|431040379|gb|ELD50914.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE224]
gi|431049857|gb|ELD59735.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE228]
gi|431050574|gb|ELD60319.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE230]
gi|431059308|gb|ELD68669.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE234]
gi|431062344|gb|ELD71617.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE233]
gi|431068372|gb|ELD76853.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE235]
gi|431073282|gb|ELD80933.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE236]
gi|431079005|gb|ELD85984.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE237]
gi|431082129|gb|ELD88443.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE47]
gi|431090108|gb|ELD95881.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE49]
gi|431092244|gb|ELD97948.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE51]
gi|431098880|gb|ELE04186.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE53]
gi|431106448|gb|ELE10656.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE55]
gi|431114205|gb|ELE17757.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE56]
gi|431119068|gb|ELE22083.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE58]
gi|431122459|gb|ELE25328.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE57]
gi|431126323|gb|ELE28670.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE60]
gi|431128762|gb|ELE30938.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE62]
gi|431136667|gb|ELE38523.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE67]
gi|431139753|gb|ELE41531.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE66]
gi|431146905|gb|ELE48328.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE72]
gi|431152798|gb|ELE53724.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE75]
gi|431157967|gb|ELE58589.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE76]
gi|431162148|gb|ELE62606.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE77]
gi|431169057|gb|ELE69288.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE80]
gi|431169368|gb|ELE69587.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE81]
gi|431178621|gb|ELE78528.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE86]
gi|431180159|gb|ELE80047.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE83]
gi|431189329|gb|ELE88752.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE87]
gi|431189668|gb|ELE89087.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE93]
gi|431198561|gb|ELE97383.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE111]
gi|431199610|gb|ELE98358.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE116]
gi|431209492|gb|ELF07599.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE119]
gi|431213008|gb|ELF10927.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE142]
gi|431219448|gb|ELF16859.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE143]
gi|431220522|gb|ELF17855.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE156]
gi|431232940|gb|ELF28542.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE162]
gi|431237992|gb|ELF32938.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE161]
gi|431242032|gb|ELF36459.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE171]
gi|431242378|gb|ELF36798.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE169]
gi|431255030|gb|ELF48289.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE8]
gi|431256918|gb|ELF49852.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE6]
gi|431261352|gb|ELF53391.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE9]
gi|431264433|gb|ELF56147.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE17]
gi|431272326|gb|ELF63433.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE18]
gi|431273252|gb|ELF64338.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE45]
gi|431281036|gb|ELF71944.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE42]
gi|431282678|gb|ELF73557.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE23]
gi|431290638|gb|ELF81173.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE43]
gi|431295651|gb|ELF85388.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE29]
gi|431300900|gb|ELF90447.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE22]
gi|431306812|gb|ELF95117.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE46]
gi|431309096|gb|ELF97373.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE48]
gi|431317039|gb|ELG04825.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE54]
gi|431325591|gb|ELG12974.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE59]
gi|431327776|gb|ELG15096.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE63]
gi|431335668|gb|ELG22797.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE65]
gi|431337964|gb|ELG25051.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE78]
gi|431347457|gb|ELG34345.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE84]
gi|431350461|gb|ELG37272.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE79]
gi|431354147|gb|ELG40890.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE91]
gi|431360782|gb|ELG47381.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE101]
gi|431363314|gb|ELG49883.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE115]
gi|431367173|gb|ELG53659.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE118]
gi|431378139|gb|ELG63130.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE123]
gi|431384287|gb|ELG68348.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE136]
gi|431384354|gb|ELG68414.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE135]
gi|431387870|gb|ELG71682.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE140]
gi|431393897|gb|ELG77443.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE141]
gi|431398281|gb|ELG81701.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE144]
gi|431403684|gb|ELG86955.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE146]
gi|431409146|gb|ELG92321.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE147]
gi|431415308|gb|ELG97853.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE158]
gi|431419635|gb|ELH01984.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE154]
gi|431430489|gb|ELH12320.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE194]
gi|431432855|gb|ELH14531.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE165]
gi|431440026|gb|ELH21356.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE173]
gi|431442409|gb|ELH23498.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE175]
gi|431451990|gb|ELH32444.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE184]
gi|431455430|gb|ELH35785.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE196]
gi|431462173|gb|ELH42390.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE183]
gi|431466540|gb|ELH46560.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE197]
gi|431469277|gb|ELH49207.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE203]
gi|431471653|gb|ELH51545.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE202]
gi|431480335|gb|ELH60055.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE207]
gi|431486922|gb|ELH66567.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE209]
gi|431490195|gb|ELH69812.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE211]
gi|431493952|gb|ELH73543.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE217]
gi|431498237|gb|ELH77450.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE215]
gi|431503955|gb|ELH82687.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE218]
gi|431507492|gb|ELH85777.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE223]
gi|431512564|gb|ELH90655.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE227]
gi|431522603|gb|ELH99835.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE229]
gi|431529300|gb|ELI06002.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE104]
gi|431533790|gb|ELI10283.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE106]
gi|431548835|gb|ELI22927.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE112]
gi|431550102|gb|ELI24099.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE113]
gi|431554804|gb|ELI28680.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE117]
gi|431563435|gb|ELI36647.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE120]
gi|431567832|gb|ELI40824.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE124]
gi|431569172|gb|ELI42133.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE122]
gi|431580032|gb|ELI52602.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE125]
gi|431581914|gb|ELI54355.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE128]
gi|431586544|gb|ELI57936.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE129]
gi|431595287|gb|ELI65354.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE131]
gi|431600369|gb|ELI70040.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE133]
gi|431603405|gb|ELI72830.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE137]
gi|431609211|gb|ELI78540.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE138]
gi|431614490|gb|ELI83643.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE139]
gi|431617865|gb|ELI86854.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE145]
gi|431625870|gb|ELI94427.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE148]
gi|431626982|gb|ELI95394.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE150]
gi|431632610|gb|ELJ00897.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE153]
gi|431641105|gb|ELJ08849.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE157]
gi|431643015|gb|ELJ10719.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE160]
gi|431645204|gb|ELJ12854.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE163]
gi|431655160|gb|ELJ22200.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE166]
gi|431658679|gb|ELJ25590.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE167]
gi|431660460|gb|ELJ27332.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE168]
gi|431669483|gb|ELJ35906.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE174]
gi|431672840|gb|ELJ39074.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE176]
gi|431676144|gb|ELJ42267.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE177]
gi|431685530|gb|ELJ51100.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE179]
gi|431685962|gb|ELJ51528.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE180]
gi|431690677|gb|ELJ56153.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE232]
gi|431699677|gb|ELJ64675.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE82]
gi|431704313|gb|ELJ68941.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE88]
gi|431704509|gb|ELJ69135.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE85]
gi|431714555|gb|ELJ78740.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE90]
gi|431718620|gb|ELJ82691.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE95]
gi|431719563|gb|ELJ83617.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE94]
gi|431729276|gb|ELJ92911.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE97]
gi|431733525|gb|ELJ96960.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE99]
gi|432348937|gb|ELL43379.1| RNA polymerase sigma factor RpoS [Escherichia coli J96]
gi|441715664|emb|CCQ04467.1| RNA polymerase sigma factor RpoS [Escherichia coli Nissle 1917]
gi|443423276|gb|AGC88180.1| RNA polymerase sigma factor RpoS [Escherichia coli APEC O78]
gi|444538742|gb|ELV18588.1| RNA polymerase sigma factor RpoS [Escherichia coli 09BKT078844]
gi|444575741|gb|ELV51970.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.1775]
gi|444622198|gb|ELV96162.1| RNA polymerase sigma factor RpoS [Escherichia coli PA47]
gi|444628662|gb|ELW02399.1| RNA polymerase sigma factor RpoS [Escherichia coli PA8]
gi|444640275|gb|ELW13557.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.1781]
gi|444658847|gb|ELW31284.1| RNA polymerase sigma factor RpoS [Escherichia coli 3.4880]
gi|444663003|gb|ELW35250.1| RNA polymerase sigma factor RpoS [Escherichia coli 95.0083]
gi|444668970|gb|ELW40968.1| RNA polymerase sigma factor RpoS [Escherichia coli 99.0670]
gi|449316336|gb|EMD06454.1| RNA polymerase sigma factor S RpoS [Escherichia coli O08]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|445003024|ref|ZP_21319413.1| RNA polymerase sigma factor RpoS [Escherichia coli PA2]
gi|444614542|gb|ELV88768.1| RNA polymerase sigma factor RpoS [Escherichia coli PA2]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|437524049|ref|ZP_20779353.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435249258|gb|ELO29088.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|432899849|ref|ZP_20110359.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE192]
gi|433029632|ref|ZP_20217486.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE109]
gi|431424989|gb|ELH07064.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE192]
gi|431542181|gb|ELI17420.1| RNA polymerase sigma factor rpoS [Escherichia coli KTE109]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|6010732|gb|AAF01232.1|AF184101_1 mutant RpoS [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
Length = 242
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|420299657|ref|ZP_14801703.1| RNA polymerase sigma factor RpoS [Escherichia coli TW09109]
gi|390806065|gb|EIO72987.1| RNA polymerase sigma factor RpoS [Escherichia coli TW09109]
Length = 323
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|419198318|ref|ZP_13741645.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC8A]
gi|419233951|ref|ZP_13776723.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC9B]
gi|424451053|ref|ZP_17902750.1| RNA polymerase sigma factor RpoS [Escherichia coli PA32]
gi|378045516|gb|EHW07910.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC8A]
gi|378075758|gb|EHW37772.1| RNA polymerase sigma factor RpoS [Escherichia coli DEC9B]
gi|390741358|gb|EIO12430.1| RNA polymerase sigma factor RpoS [Escherichia coli PA32]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|205353865|ref|YP_002227666.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375124725|ref|ZP_09769889.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|205273646|emb|CAR38635.1| RNA polymerase sigma subunit RpoS (sigma-38) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|326628975|gb|EGE35318.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|167993163|ref|ZP_02574258.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205328726|gb|EDZ15490.1| RNA polymerase sigma factor RpoS [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|4100836|gb|AAD01000.1| RpoS [Escherichia coli]
Length = 259
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 83/122 (68%), Gaps = 6/122 (4%)
Query: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLH 356
+ G P L A+ + + R L+ ++ +SR ++I +NLRLVV +A++Y RG++L
Sbjct: 41 GEIGYSPLLT--AEEVYFARRALRGDV----ASRRRMIESNLRLVVKIARRYGNRGLALL 94
Query: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPI 416
DL++EG++GL+++VEKF P+ G RF++YA WW+RQTI +AI +RTIRLP+ +
Sbjct: 95 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNV 154
Query: 417 YI 418
Y+
Sbjct: 155 YL 156
>gi|417703972|ref|ZP_12353076.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-218]
gi|417724397|ref|ZP_12373198.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-304]
gi|417729645|ref|ZP_12378338.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-671]
gi|420343089|ref|ZP_14844556.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-404]
gi|420374837|ref|ZP_14874771.1| RNA polymerase sigma factor RpoS [Shigella flexneri 1235-66]
gi|27735253|sp|P35540.3|RPOS_SHIFL RecName: Full=RNA polymerase sigma factor RpoS
gi|332753598|gb|EGJ83977.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-671]
gi|333000355|gb|EGK19938.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-218]
gi|333015759|gb|EGK35097.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-304]
gi|391264299|gb|EIQ23292.1| RNA polymerase sigma factor RpoS [Shigella flexneri K-404]
gi|391315771|gb|EIQ73294.1| RNA polymerase sigma factor RpoS [Shigella flexneri 1235-66]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|425268580|ref|ZP_18660211.1| RNA polymerase sigma factor RpoS [Escherichia coli 5412]
gi|408182014|gb|EKI08548.1| RNA polymerase sigma factor RpoS [Escherichia coli 5412]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|374608203|ref|ZP_09681002.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553735|gb|EHP80322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 319
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 15/155 (9%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R++L G LL A +E EL +I+ + L +Q L+ K +G
Sbjct: 21 DLVRVYLNGIGKTALLNAADEVELAKRIE---------AGLYAQH-----LLATRKRLGE 66
Query: 315 S-CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
+ RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG++GL++++EKF
Sbjct: 67 NRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKF 126
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I + + SRTIRLPV
Sbjct: 127 DYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 161
>gi|375257020|ref|YP_005016190.1| RNA polymerase sigma factor RpoS [Klebsiella oxytoca KCTC 1686]
gi|397659630|ref|YP_006500332.1| RNA polymerase sigma factor RpoS [Klebsiella oxytoca E718]
gi|402839554|ref|ZP_10888041.1| RNA polymerase sigma factor RpoS [Klebsiella sp. OBRC7]
gi|423104540|ref|ZP_17092242.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5242]
gi|423109967|ref|ZP_17097662.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5243]
gi|423115927|ref|ZP_17103618.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5245]
gi|423125454|ref|ZP_17113133.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5250]
gi|365906498|gb|AEX01951.1| RNA polymerase sigma factor RpoS [Klebsiella oxytoca KCTC 1686]
gi|376379872|gb|EHS92622.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5245]
gi|376380902|gb|EHS93644.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5243]
gi|376382503|gb|EHS95236.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5242]
gi|376399060|gb|EHT11681.1| RNA polymerase sigma factor rpoS [Klebsiella oxytoca 10-5250]
gi|394347765|gb|AFN33886.1| RNA polymerase sigma factor RpoS [Klebsiella oxytoca E718]
gi|402287828|gb|EJU36258.1| RNA polymerase sigma factor RpoS [Klebsiella sp. OBRC7]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|350540918|gb|AEQ27731.1| RNA polymerase sigma 38 factor [Escherichia coli]
Length = 330
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|425256318|ref|ZP_18648837.1| RNA polymerase sigma factor RpoS [Escherichia coli CB7326]
gi|408172385|gb|EKH99458.1| RNA polymerase sigma factor RpoS [Escherichia coli CB7326]
Length = 330
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|417603400|ref|ZP_12253967.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_94C]
gi|345348922|gb|EGW81213.1| RNA polymerase sigma factor RpoS [Escherichia coli STEC_94C]
Length = 330
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|270264030|ref|ZP_06192298.1| RNA polymerase sigma factor RpoS [Serratia odorifera 4Rx13]
gi|333925639|ref|YP_004499218.1| RpoD subfamily RNA polymerase sigma-70 subunit [Serratia sp. AS12]
gi|333930592|ref|YP_004504170.1| RpoD subfamily RNA polymerase sigma-70 subunit [Serratia plymuthica
AS9]
gi|386327463|ref|YP_006023633.1| RpoD subfamily RNA polymerase sigma-70 subunit [Serratia sp. AS13]
gi|386823216|ref|ZP_10110371.1| RNA polymerase sigma factor RpoS [Serratia plymuthica PRI-2C]
gi|421781717|ref|ZP_16218182.1| RNA polymerase sigma factor RpoS [Serratia plymuthica A30]
gi|270042223|gb|EFA15319.1| RNA polymerase sigma factor RpoS [Serratia odorifera 4Rx13]
gi|333472199|gb|AEF43909.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Serratia
plymuthica AS9]
gi|333489699|gb|AEF48861.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Serratia sp.
AS12]
gi|333959796|gb|AEG26569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Serratia sp.
AS13]
gi|342730626|gb|AEL33293.1| RpoS [Serratia plymuthica]
gi|386380003|gb|EIJ20785.1| RNA polymerase sigma factor RpoS [Serratia plymuthica PRI-2C]
gi|407756283|gb|EKF66401.1| RNA polymerase sigma factor RpoS [Serratia plymuthica A30]
Length = 332
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 69/90 (76%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388
SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF++YA WW
Sbjct: 92 SRRRMIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 151
Query: 389 VRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+RQTI +AI +RTIRLP+ +Y+
Sbjct: 152 IRQTIERAIMNQTRTIRLPIHIVKELNVYL 181
>gi|159037062|ref|YP_001536315.1| RNA polymerase sigma factor SigB [Salinispora arenicola CNS-205]
gi|157915897|gb|ABV97324.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 328
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 97/155 (62%), Gaps = 13/155 (8%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIG 313
D +R +L+G KLLTA +E EL +I+ + E +KL + TL +A
Sbjct: 28 TDLVRAYLYGIGKTKLLTAAQEVELSRRIEAGLFAE---AKLAACTPVSATL----RA-- 78
Query: 314 LSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373
DL+ G ++++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+++VEKF
Sbjct: 79 ----DLELVAVEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 134
Query: 374 KPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPV 408
G +F++YA WW+RQ I +A+ SRTIR+PV
Sbjct: 135 DYTKGYKFSTYATWWIRQAITRAMADQSRTIRIPV 169
>gi|416776845|ref|ZP_11874879.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
G5101]
gi|320640384|gb|EFX09923.1| RNA polymerase sigma factor RpoS [Escherichia coli O157:H7 str.
G5101]
Length = 330
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 LRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 143
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +AI +RTIRLP+ +Y+
Sbjct: 144 TYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYL 179
>gi|229520830|ref|ZP_04410252.1| RNA polymerase sigma factor RpoS [Vibrio cholerae TM 11079-80]
gi|417823662|ref|ZP_12470254.1| RNA polymerase sigma factor RpoS [Vibrio cholerae HE48]
gi|229342063|gb|EEO07059.1| RNA polymerase sigma factor RpoS [Vibrio cholerae TM 11079-80]
gi|340048291|gb|EGR09213.1| RNA polymerase sigma factor RpoS [Vibrio cholerae HE48]
Length = 335
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 72/96 (75%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L ++R+++I +NLRLVV ++++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 85 LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFS 144
Query: 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYI 418
+YA WW+RQTI +A+ +RTIRLP+ IY+
Sbjct: 145 TYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYV 180
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,102,786,650
Number of Sequences: 23463169
Number of extensions: 238260659
Number of successful extensions: 1186019
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10224
Number of HSP's successfully gapped in prelim test: 527
Number of HSP's that attempted gapping in prelim test: 1167835
Number of HSP's gapped (non-prelim): 17499
length of query: 429
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 284
effective length of database: 8,957,035,862
effective search space: 2543798184808
effective search space used: 2543798184808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)