Query 014193
Match_columns 429
No_of_seqs 293 out of 1887
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 07:09:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 1.4E-31 4.8E-36 275.6 19.1 172 252-423 91-292 (438)
2 3ugo_A RNA polymerase sigma fa 100.0 1.7E-31 5.7E-36 255.2 15.8 172 253-424 5-206 (245)
3 2a6h_F RNA polymerase sigma fa 100.0 1.1E-31 3.9E-36 274.1 12.5 170 253-422 77-276 (423)
4 3iyd_F RNA polymerase sigma fa 99.7 3.6E-19 1.2E-23 189.1 2.6 108 315-422 357-468 (613)
5 1sig_A Sigma70, RNA polymerase 99.7 1.2E-16 4E-21 157.4 12.3 86 317-402 250-339 (339)
6 1l0o_C Sigma factor; bergerat 99.5 1.6E-15 5.6E-20 136.8 2.5 108 315-423 14-122 (243)
7 1rp3_A RNA polymerase sigma fa 99.5 2.1E-13 7.2E-18 123.2 11.5 89 327-418 11-102 (239)
8 1or7_A Sigma-24, RNA polymeras 99.1 1.1E-10 3.6E-15 103.0 8.2 87 315-404 9-96 (194)
9 2q1z_A RPOE, ECF SIGE; ECF sig 99.1 3.5E-11 1.2E-15 105.5 3.5 92 314-406 11-104 (184)
10 2o7g_A Probable RNA polymerase 98.9 3.5E-09 1.2E-13 87.2 6.8 87 318-407 13-100 (112)
11 1h3l_A RNA polymerase sigma fa 98.7 1.1E-08 3.8E-13 80.6 4.9 77 324-402 7-84 (87)
12 3mzy_A RNA polymerase sigma-H 98.6 1.4E-08 4.9E-13 86.1 4.1 52 352-404 1-52 (164)
13 2lfw_A PHYR sigma-like domain; 97.9 5.4E-07 1.8E-11 78.7 -3.5 70 330-401 3-72 (157)
14 3n0r_A Response regulator; sig 97.7 6.5E-06 2.2E-10 79.0 0.7 73 326-400 18-91 (286)
15 3iyd_F RNA polymerase sigma fa 94.7 0.0096 3.3E-07 63.4 1.8 35 252-286 93-127 (613)
16 3knw_A Putative transcriptiona 57.9 82 0.0028 26.3 11.6 73 297-369 28-101 (212)
17 3nxc_A HTH-type protein SLMA; 46.1 1E+02 0.0036 25.6 8.8 74 297-370 39-113 (212)
18 3qbm_A TETR transcriptional re 44.5 1.3E+02 0.0044 24.6 9.2 74 295-368 19-93 (199)
19 2jt1_A PEFI protein; solution 43.5 31 0.0011 27.2 4.7 27 293-319 15-41 (77)
20 3ppb_A Putative TETR family tr 43.5 1.3E+02 0.0045 24.4 11.9 73 297-369 23-96 (195)
21 3pas_A TETR family transcripti 42.5 1.4E+02 0.0047 24.3 9.1 68 302-369 28-95 (195)
22 3f1b_A TETR-like transcription 41.7 1.4E+02 0.005 24.4 11.8 76 295-370 26-102 (203)
23 3dcf_A Transcriptional regulat 40.4 1.6E+02 0.0054 24.5 11.5 75 297-371 45-120 (218)
24 3mn2_A Probable ARAC family tr 38.9 47 0.0016 26.2 5.2 36 290-325 6-41 (108)
25 3kz9_A SMCR; transcriptional r 37.6 1.7E+02 0.0058 24.0 11.7 76 295-370 29-105 (206)
26 1sgm_A Putative HTH-type trans 35.6 1.7E+02 0.0059 23.7 8.4 74 297-370 20-95 (191)
27 3oio_A Transcriptional regulat 34.3 52 0.0018 26.2 4.8 36 290-325 11-46 (113)
28 3lsg_A Two-component response 33.9 62 0.0021 25.2 5.1 32 294-325 10-42 (103)
29 3rd3_A Probable transcriptiona 33.1 2E+02 0.0067 23.4 11.2 80 297-376 24-105 (197)
30 2k9s_A Arabinose operon regula 32.9 64 0.0022 25.4 5.1 36 290-325 7-43 (107)
31 1bl0_A Protein (multiple antib 32.9 1.3E+02 0.0043 24.6 7.1 35 291-325 16-50 (129)
32 3eup_A Transcriptional regulat 32.7 91 0.0031 25.7 6.3 66 303-368 32-97 (204)
33 3oou_A LIN2118 protein; protei 32.2 66 0.0023 25.4 5.1 35 292-326 11-45 (108)
34 2v57_A TETR family transcripti 32.0 2.1E+02 0.0071 23.3 9.6 59 301-359 31-89 (190)
35 3col_A Putative transcription 31.7 2.1E+02 0.007 23.2 8.9 75 298-372 25-102 (196)
36 3mnl_A KSTR, transcriptional r 31.5 1.7E+02 0.0059 24.0 7.8 68 303-370 41-108 (203)
37 3ni7_A Bacterial regulatory pr 31.2 2.6E+02 0.0088 24.2 9.9 76 294-369 18-94 (213)
38 3jsj_A Putative TETR-family tr 31.1 2.2E+02 0.0074 23.3 11.6 76 297-372 23-98 (190)
39 2zc2_A DNAD-like replication p 30.2 80 0.0027 24.1 5.0 57 297-357 12-75 (78)
40 2g7s_A Transcriptional regulat 28.8 2.3E+02 0.0079 22.8 10.2 79 295-373 20-99 (194)
41 3g1o_A Transcriptional regulat 28.8 2.9E+02 0.01 24.1 10.3 75 296-370 56-133 (255)
42 2qtq_A Transcriptional regulat 28.5 2.5E+02 0.0085 23.1 11.8 74 299-372 32-107 (213)
43 3he0_A Transcriptional regulat 28.3 2.4E+02 0.0082 22.9 9.9 71 297-367 25-96 (196)
44 3him_A Probable transcriptiona 28.1 2.4E+02 0.0082 23.1 8.1 72 297-368 30-102 (211)
45 3bni_A Putative TETR-family tr 27.2 3E+02 0.01 23.6 11.8 78 295-372 55-135 (229)
46 3mkl_A HTH-type transcriptiona 26.9 81 0.0028 25.4 4.8 35 291-325 12-46 (120)
47 3q0w_A HTH-type transcriptiona 26.9 3E+02 0.01 23.6 10.5 74 297-370 58-134 (236)
48 3f0c_A TETR-molecule A, transc 25.6 2.9E+02 0.0098 22.9 11.3 75 297-371 25-100 (216)
49 2qwt_A Transcriptional regulat 25.4 2.9E+02 0.01 22.9 9.9 49 293-341 23-71 (196)
50 3aqt_A Bacterial regulatory pr 24.9 2.4E+02 0.0083 24.6 7.9 40 298-337 61-101 (245)
51 3qkx_A Uncharacterized HTH-typ 24.5 2.8E+02 0.0094 22.3 11.6 75 294-368 19-94 (188)
52 2hku_A A putative transcriptio 24.4 3.1E+02 0.011 22.9 10.3 45 298-342 35-79 (215)
53 2iai_A Putative transcriptiona 23.8 2.5E+02 0.0087 24.0 7.8 44 299-342 46-90 (230)
54 2ibd_A Possible transcriptiona 23.3 3.2E+02 0.011 22.7 11.3 73 295-367 26-99 (204)
55 3bqz_B HTH-type transcriptiona 23.2 3E+02 0.01 22.3 10.8 71 297-367 16-87 (194)
56 3s5r_A Transcriptional regulat 22.6 3.3E+02 0.011 22.5 11.5 77 295-371 22-100 (216)
57 3ccy_A Putative TETR-family tr 22.3 3.4E+02 0.012 22.5 8.7 48 295-342 26-74 (203)
58 3mvp_A TETR/ACRR transcription 20.7 3.4E+02 0.012 22.3 7.7 46 297-342 40-86 (217)
59 3c07_A Putative TETR-family tr 20.7 4.7E+02 0.016 23.5 9.3 50 293-342 51-101 (273)
60 2ras_A Transcriptional regulat 20.5 3.7E+02 0.013 22.3 9.4 69 295-363 23-92 (212)
61 1sig_A Sigma70, RNA polymerase 20.1 69 0.0024 30.8 3.6 18 269-286 1-18 (339)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=99.97 E-value=1.4e-31 Score=275.60 Aligned_cols=172 Identities=35% Similarity=0.561 Sum_probs=150.2
Q ss_pred CCCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhCCCCcHHHHHH---
Q 014193 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 310 (429)
Q Consensus 252 ~~~d~l~~YL~~i~~~~lLT~EEE~eL~~~Iq~l~~le~~~~------------------~L~~~~Gr~Pt~~ewA~--- 310 (429)
...|+++.||++|+++|+||+|||++|+++|+.++.++.... ......|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 457899999999999999999999999999999754432211 12234567888888743
Q ss_pred ---------HhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCCh
Q 014193 311 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381 (429)
Q Consensus 311 ---------aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rF 381 (429)
+.|++..+|+..++.|..|+++||.+|+++|+++|++|.++|.+++||||||+||||+|+++|||++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23667788999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCcccchhHHhhhhHHHHHHHH
Q 014193 382 ASYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFKFYV 423 (429)
Q Consensus 382 STYA~~wIR~aI~~aIrkqsr~IRlP~~~~e~l~ki~ra~~~ 423 (429)
+|||+||||+.|.++|+++.+.+|+|.|+.+.++++.+....
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~ 292 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQ 292 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888776543
No 2
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=99.97 E-value=1.7e-31 Score=255.21 Aligned_cols=172 Identities=34% Similarity=0.559 Sum_probs=131.9
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH--h-----------------------hhCCCCcHH
Q 014193 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSKLQ--S-----------------------QFGREPTLI 306 (429)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~EEE~eL~~~Iq~l~~-le~~~~~L~--~-----------------------~~Gr~Pt~~ 306 (429)
.+|+++.||++|+++||||++||++|+++|+.++. .+.+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 57999999999999999999999999999999875 232221100 0 014689999
Q ss_pred HHHHHhcCCH----HHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChh
Q 014193 307 EWAKAIGLSC----RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382 (429)
Q Consensus 307 ewA~aagm~~----eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFS 382 (429)
+||.+.||+. .+|...++.|+.|+++|+..|+++|+++|++|.+++.+.+||+|||++|||+|+++|||++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 9999999863 456667777889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcccchhHHhhhhHHHHHHHHh
Q 014193 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFKFYVF 424 (429)
Q Consensus 383 TYA~~wIR~aI~~aIrkqsr~IRlP~~~~e~l~ki~ra~~~L 424 (429)
||+.||||++|.++++++.+.+++|.++.+.++++.++...|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L 206 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQL 206 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887766544
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=99.97 E-value=1.1e-31 Score=274.12 Aligned_cols=170 Identities=36% Similarity=0.578 Sum_probs=145.4
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhCCCCcHHH-------
Q 014193 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------LQSQFGREPTLIE------- 307 (429)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~EEE~eL~~~Iq~l~~le~~~~~------------------L~~~~Gr~Pt~~e------- 307 (429)
..|+++.||++|+++|+||+|||++|+++|+.+..+...... .....|+.|+..+
T Consensus 77 ~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (423)
T 2a6h_F 77 TSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTV 156 (423)
T ss_dssp THHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHHH
T ss_pred CCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhhh
Confidence 468999999999999999999999999999997543321110 1112234555443
Q ss_pred --HH---HHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChh
Q 014193 308 --WA---KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382 (429)
Q Consensus 308 --wA---~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFS 382 (429)
|+ .++++++.+|+..++.|..|+++||.+|+++|+++|++|.++|.+++||||||+||||+|+++|||.+|++|+
T Consensus 157 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~Fs 236 (423)
T 2a6h_F 157 EEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 236 (423)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHH
T ss_pred hhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHH
Confidence 33 2356788899999998889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcccchhHHhhhhHHHHHHH
Q 014193 383 SYAYWWVRQTIRKAIFQHSRTIRLPVMTFNLSPIYIFKFY 422 (429)
Q Consensus 383 TYA~~wIR~aI~~aIrkqsr~IRlP~~~~e~l~ki~ra~~ 422 (429)
|||+||||++|.++|+++.+.+|+|.|+.+.++++.+...
T Consensus 237 tYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~ 276 (423)
T 2a6h_F 237 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTAR 276 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877654
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.74 E-value=3.6e-19 Score=189.06 Aligned_cols=108 Identities=38% Similarity=0.749 Sum_probs=100.8
Q ss_pred CHHHHHHHhhccH-HH---HHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHH
Q 014193 315 SCRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390 (429)
Q Consensus 315 ~~eeL~~~lk~G~-~A---re~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR 390 (429)
+..+|+..++.|+ .| +++|+..|+++|+++|++|.+++.+++||+|||+||||+++++||+.+|++|+||++||||
T Consensus 357 ~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~ir 436 (613)
T 3iyd_F 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 (613)
T ss_dssp THHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHH
Confidence 3567889999998 55 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccchhHHhhhhHHHHHHH
Q 014193 391 QTIRKAIFQHSRTIRLPVMTFNLSPIYIFKFY 422 (429)
Q Consensus 391 ~aI~~aIrkqsr~IRlP~~~~e~l~ki~ra~~ 422 (429)
++|.++++++.+.+|+|.|+.+.++++.+...
T Consensus 437 n~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~ 468 (613)
T 3iyd_F 437 QAITRSIADQARTIRIPVHMIETINKLNRISR 468 (613)
T ss_dssp HHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTT
T ss_pred HHHHHHHHhcCcceeCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888765543
No 5
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.68 E-value=1.2e-16 Score=157.44 Aligned_cols=86 Identities=42% Similarity=0.914 Sum_probs=80.0
Q ss_pred HHHHHHhhccH----HHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHH
Q 014193 317 RDLKSELHSGN----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392 (429)
Q Consensus 317 eeL~~~lk~G~----~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~a 392 (429)
.+|+..+..|+ .|++.|+..|+++|+++|++|.+++.+++||+|||+||||+++++||+.+|.+|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 56788888887 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 014193 393 IRKAIFQHSR 402 (429)
Q Consensus 393 I~~aIrkqsr 402 (429)
|.+++|++.+
T Consensus 330 ~~~~lr~~~r 339 (339)
T 1sig_A 330 ITRSIADQAR 339 (339)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhcC
Confidence 9999999753
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.53 E-value=1.6e-15 Score=136.77 Aligned_cols=108 Identities=25% Similarity=0.405 Sum_probs=17.3
Q ss_pred CHHHHHHHhhccH-HHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHH
Q 014193 315 SCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393 (429)
Q Consensus 315 ~~eeL~~~lk~G~-~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI 393 (429)
++.+|+..++.|+ .+++.|+..|.++|+.+|.+|.+...+.+||+|||+++|++++++||+.+|..|.+|+..+|++.+
T Consensus 14 ~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~ 93 (243)
T 1l0o_C 14 EMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEI 93 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 4567888888898 899999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcccchhHHhhhhHHHHHHHH
Q 014193 394 RKAIFQHSRTIRLPVMTFNLSPIYIFKFYV 423 (429)
Q Consensus 394 ~~aIrkqsr~IRlP~~~~e~l~ki~ra~~~ 423 (429)
.++++++. .+++|.++.....++.+....
T Consensus 94 ~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~ 122 (243)
T 1l0o_C 94 QRFLRDDG-TVKVSRSLKEMGNKIRKAKDE 122 (243)
T ss_dssp ------CC-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CccCcHHHHHHHHHHHHHHHH
Confidence 99999987 789999888877777665543
No 7
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.47 E-value=2.1e-13 Score=123.24 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHcc---cCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHhcCCC
Q 014193 327 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403 (429)
Q Consensus 327 ~~Are~LIesnL~LV~sIAkrY~---~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI~~aIrkqsr~ 403 (429)
+.++++|+..|.++|+.+|.+|. +.+.+.+||+|||+++|++++++||+.+|.+|.||+.+||++.|.++++++.+
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~- 89 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDF- 89 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSST-
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCc-
Confidence 35899999999999999999998 67889999999999999999999999999999999999999999999999864
Q ss_pred cccchhHHhhhhHHH
Q 014193 404 IRLPVMTFNLSPIYI 418 (429)
Q Consensus 404 IRlP~~~~e~l~ki~ 418 (429)
.|.+......++.
T Consensus 90 --~~~~~~~~~~~~~ 102 (239)
T 1rp3_A 90 --GSRQVREKERRIK 102 (239)
T ss_dssp --TCHHHHHHHHHHH
T ss_pred --cchHHHHHHHHHH
Confidence 4655544444443
No 8
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.12 E-value=1.1e-10 Score=103.00 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=79.8
Q ss_pred CHHHHHHHhhccH-HHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHH
Q 014193 315 SCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393 (429)
Q Consensus 315 ~~eeL~~~lk~G~-~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI 393 (429)
++.+|+..++.|+ .+++.|+..|.+.|+.+|.+|.+ ..+.+|++||+++++++++++|++.. .|.+|+..++++.+
T Consensus 9 ~~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~ 85 (194)
T 1or7_A 9 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTA 85 (194)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHH
Confidence 4577888898888 89999999999999999999999 89999999999999999999999874 59999999999999
Q ss_pred HHHHHhcCCCc
Q 014193 394 RKAIFQHSRTI 404 (429)
Q Consensus 394 ~~aIrkqsr~I 404 (429)
.+++|++.+..
T Consensus 86 ~d~~R~~~~~~ 96 (194)
T 1or7_A 86 KNYLVAQGRRP 96 (194)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHhccC
Confidence 99999876543
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.09 E-value=3.5e-11 Score=105.48 Aligned_cols=92 Identities=9% Similarity=0.031 Sum_probs=83.8
Q ss_pred CCHHHHHHH-hhccH-HHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHH
Q 014193 314 LSCRDLKSE-LHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391 (429)
Q Consensus 314 m~~eeL~~~-lk~G~-~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~ 391 (429)
+++++|+.. +..|+ .+++.|+..|.+.|+.+|.+|.+...+.+|++||+++.+++++++|++..| .|.+|+...+++
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 677889998 88887 899999999999999999999988889999999999999999999999876 799999999999
Q ss_pred HHHHHHHhcCCCccc
Q 014193 392 TIRKAIFQHSRTIRL 406 (429)
Q Consensus 392 aI~~aIrkqsr~IRl 406 (429)
.+.+++|++.+...+
T Consensus 90 ~~~d~~R~~~~~~~~ 104 (184)
T 2q1z_A 90 RRIDGLRKDRQPEPE 104 (184)
T ss_dssp SCCTTTCSSSCCCCC
T ss_pred HHHHHHHhhcccccc
Confidence 999999987654433
No 10
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.86 E-value=3.5e-09 Score=87.16 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHhhccH-HHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHH
Q 014193 318 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396 (429)
Q Consensus 318 eL~~~lk~G~-~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI~~a 396 (429)
+|+..+..|+ .+++.|+..|.+.|+.+|.++ +...+.+|++||+++.+++.+.+|++. ..|.+|+...+++.+.++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 5777777777 899999999999999999999 877889999999999999999999974 479999999999999999
Q ss_pred HHhcCCCcccc
Q 014193 397 IFQHSRTIRLP 407 (429)
Q Consensus 397 Irkqsr~IRlP 407 (429)
+|++.+..+++
T Consensus 90 ~R~~~~~~~~~ 100 (112)
T 2o7g_A 90 IRHVRSRPRTT 100 (112)
T ss_dssp TC---------
T ss_pred HHHhhcccccc
Confidence 99876554443
No 11
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.71 E-value=1.1e-08 Score=80.58 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=67.6
Q ss_pred hccH-HHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q 014193 324 HSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSR 402 (429)
Q Consensus 324 k~G~-~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI~~aIrkqsr 402 (429)
..|+ .+++.|+..|.+.++.+|.++.+...+.+|++||+++.+++.+.+|++. ..|.+|+...+++.+.+.+|++.+
T Consensus 7 ~~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~~ 84 (87)
T 1h3l_A 7 TAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQR 84 (87)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC----
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455 8999999999999999999999888899999999999999999999975 479999999999999999887653
No 12
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=98.64 E-value=1.4e-08 Score=86.14 Aligned_cols=52 Identities=29% Similarity=0.546 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHhcCCCc
Q 014193 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTI 404 (429)
Q Consensus 352 Gld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI~~aIrkqsr~I 404 (429)
|.+.+|++|||+++|++++++||+.+ .+|.+|+..++++.+.+++|++.+..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~ 52 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQK 52 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhccc
Confidence 67899999999999999999999998 68999999999999999999975443
No 13
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=97.87 E-value=5.4e-07 Score=78.67 Aligned_cols=70 Identities=7% Similarity=0.041 Sum_probs=63.8
Q ss_pred HHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHhcC
Q 014193 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 401 (429)
Q Consensus 330 re~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI~~aIrkqs 401 (429)
++.|+..|.+.|+.+|.++.+...+.+|++||+++.+++++++|++. ..|.+|++..+++.+.+++|+..
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~ 72 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGE 72 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccC
Confidence 46788999999999999999888899999999999999999999976 46999999999999999998753
No 14
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=97.70 E-value=6.5e-06 Score=78.97 Aligned_cols=73 Identities=10% Similarity=-0.015 Sum_probs=64.9
Q ss_pred cH-HHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHhc
Q 014193 326 GN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQH 400 (429)
Q Consensus 326 G~-~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKFDpsrG~rFSTYA~~wIR~aI~~aIrkq 400 (429)
|+ .++++|+..|.+.++.+|.+|.+...+.+|++||.++.+|+...+|++. ..|.+|++..++|.+.+.+|+.
T Consensus 18 g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~ 91 (286)
T 3n0r_A 18 GSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQL 91 (286)
T ss_dssp --CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC--
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccc
Confidence 44 6899999999999999999999988889999999999999999999975 4799999999999999988864
No 15
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.68 E-value=0.0096 Score=63.37 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=13.8
Q ss_pred CCCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHH
Q 014193 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286 (429)
Q Consensus 252 ~~~d~l~~YL~~i~~~~lLT~EEE~eL~~~Iq~l~ 286 (429)
..+||++.||++||+.||||+++|++|+++|..+.
T Consensus 93 ~~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 93 RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp ------------C--------CSSSTTTHHHHHHH
T ss_pred CCCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 36899999999999999999999999999999864
No 16
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=57.92 E-value=82 Score=26.25 Aligned_cols=73 Identities=16% Similarity=0.011 Sum_probs=53.5
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHH
Q 014193 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369 (429)
Q Consensus 297 ~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkA 369 (429)
.+.| ...|..+.|+++|++...+..-...-++....++..+..-+..........+.+..+.+...+..++..
T Consensus 28 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (212)
T 3knw_A 28 LRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKD 101 (212)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC
T ss_pred HHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 3446 458999999999999999988888777777777777776666666555444667777666666555555
No 17
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=46.11 E-value=1e+02 Score=25.56 Aligned_cols=74 Identities=16% Similarity=0.024 Sum_probs=44.8
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHH
Q 014193 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (429)
Q Consensus 297 ~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAI 370 (429)
.+.| ...|..+.|+++|++...+..-...-++....++..+..-+..........+.+..+.+...+..++..+
T Consensus 39 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (212)
T 3nxc_A 39 SSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFG 113 (212)
T ss_dssp C------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3346 4579999999999998888777776666666666665555554444443334455555555555554443
No 18
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=44.53 E-value=1.3e+02 Score=24.62 Aligned_cols=74 Identities=11% Similarity=-0.077 Sum_probs=50.9
Q ss_pred HHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHH
Q 014193 295 LQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368 (429)
Q Consensus 295 L~~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmk 368 (429)
+-.+.|- ..|..+.|+++|++...+..-...-++....++..+..-+..........+.+..+.+...+-.++.
T Consensus 19 l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (199)
T 3qbm_A 19 LFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRS 93 (199)
T ss_dssp HHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHG
T ss_pred HHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 3344564 4799999999999999888888777777777777777666665555444455666665555444443
No 19
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=43.52 E-value=31 Score=27.18 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=20.4
Q ss_pred HHHHhhhCCCCcHHHHHHHhcCCHHHH
Q 014193 293 SKLQSQFGREPTLIEWAKAIGLSCRDL 319 (429)
Q Consensus 293 ~~L~~~~Gr~Pt~~ewA~aagm~~eeL 319 (429)
..+.+..|.+|+..|.|++.|++....
T Consensus 15 ~~i~~~~g~~psv~EIa~~lgvS~~TV 41 (77)
T 2jt1_A 15 ERQNMDDGAPVKTRDIADAAGLSIYQV 41 (77)
T ss_dssp HHHHHHTTSCEEHHHHHHHHTCCHHHH
T ss_pred HHHhhccCCCcCHHHHHHHHCCCHHHH
Confidence 334444588999999999999986443
No 20
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=43.51 E-value=1.3e+02 Score=24.40 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=53.0
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHH
Q 014193 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369 (429)
Q Consensus 297 ~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkA 369 (429)
.+.| ...|..+.|+++|++...+..-...-++....++.....-+..........+.+..+.+......++..
T Consensus 23 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (195)
T 3ppb_A 23 VSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTW 96 (195)
T ss_dssp HHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH
Confidence 3456 457999999999999999988888777777788777777766666555555566666666655554443
No 21
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=42.46 E-value=1.4e+02 Score=24.30 Aligned_cols=68 Identities=21% Similarity=0.089 Sum_probs=45.4
Q ss_pred CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHH
Q 014193 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369 (429)
Q Consensus 302 ~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkA 369 (429)
..|..+.|+++|++...+..-...-+.....++.....-+..........+.+..+.+......++..
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRI 95 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 36899999999999998888888777777777776665555444443334555555555444444433
No 22
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=41.68 E-value=1.4e+02 Score=24.39 Aligned_cols=76 Identities=18% Similarity=0.063 Sum_probs=51.6
Q ss_pred HHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHH
Q 014193 295 LQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (429)
Q Consensus 295 L~~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAI 370 (429)
+-.+.|- ..|..+.|+++|++...+..-...-+.....++.....-+..........+.+..|.+...+..++..+
T Consensus 26 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (203)
T 3f1b_A 26 VFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRALEGFLGFV 102 (203)
T ss_dssp HHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3344563 579999999999999988888877667777777776666655555544455566665555555444433
No 23
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=40.38 E-value=1.6e+02 Score=24.46 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=51.4
Q ss_pred hhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHH
Q 014193 297 SQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371 (429)
Q Consensus 297 ~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIe 371 (429)
.+.|- ..|..+.|+++|++...+..-...-++....++.....-+..........+.+..+-+...+..++..+.
T Consensus 45 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (218)
T 3dcf_A 45 REKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTIL 120 (218)
T ss_dssp HHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 34564 5799999999999999888888777777777777766665555555444455666655555555555444
No 24
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=38.88 E-value=47 Score=26.17 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=28.1
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014193 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (429)
Q Consensus 290 ~~~~~L~~~~Gr~Pt~~ewA~aagm~~eeL~~~lk~ 325 (429)
++..-+...++.+++..++|+.+||+...|.+.++.
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334445566777899999999999999888877775
No 25
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=37.62 E-value=1.7e+02 Score=23.97 Aligned_cols=76 Identities=8% Similarity=0.067 Sum_probs=55.1
Q ss_pred HHhhhCCC-CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHH
Q 014193 295 LQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (429)
Q Consensus 295 L~~~~Gr~-Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAI 370 (429)
|-.+.|-. .|..+.|+++|++...+..-...-+.....++..+..-+..........+.+..|.+...+..++..+
T Consensus 29 l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 105 (206)
T 3kz9_A 29 VFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIANITNAMIELV 105 (206)
T ss_dssp HHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33445755 79999999999999999888888778888888877777766666655555666666666555555444
No 26
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=35.60 E-value=1.7e+02 Score=23.66 Aligned_cols=74 Identities=12% Similarity=0.004 Sum_probs=46.9
Q ss_pred hhhCC-CCcHHHHHHHhcCCHHHHHHHhhc-cHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHH
Q 014193 297 SQFGR-EPTLIEWAKAIGLSCRDLKSELHS-GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (429)
Q Consensus 297 ~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~-G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAI 370 (429)
.+.|- ..|..+.|+++|++...+..-... -+.....++.....-+..........+.+..+-+....-.++..+
T Consensus 20 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (191)
T 1sgm_A 20 QLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQF 95 (191)
T ss_dssp HHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Confidence 34464 479999999999998888888875 666666666666555544443333334455555555554444433
No 27
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=34.28 E-value=52 Score=26.19 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014193 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (429)
Q Consensus 290 ~~~~~L~~~~Gr~Pt~~ewA~aagm~~eeL~~~lk~ 325 (429)
++..-+.+.+..+++..++|+.+||+...|.+.++.
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334445566777899999999999999888877765
No 28
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=33.89 E-value=62 Score=25.23 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=25.6
Q ss_pred HHHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhc
Q 014193 294 KLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHS 325 (429)
Q Consensus 294 ~L~~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~ 325 (429)
-+.+.+.. +++..++|+..||+...|.+.++.
T Consensus 10 ~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455666 789999999999999888877765
No 29
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=33.14 E-value=2e+02 Score=23.42 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=55.3
Q ss_pred hhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcc-cCCCCHHHHHHHHHHHHHHHHHhhC
Q 014193 297 SQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ-GRGISLHDLLQEGSMGLMKSVEKFK 374 (429)
Q Consensus 297 ~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~-~rGld~eDLIQEG~IGLmkAIeKFD 374 (429)
.+.|- ..|..+.|+++|++...+..-...-++....++..+..-+........ ..+.+..+-+..-+..++..+....
T Consensus 24 ~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (197)
T 3rd3_A 24 AVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPC 103 (197)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHCCTTS
T ss_pred HHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcCc
Confidence 34464 479999999999999888877776667777777766666555554443 3456777777777777766655544
Q ss_pred CC
Q 014193 375 PQ 376 (429)
Q Consensus 375 ps 376 (429)
..
T Consensus 104 ~~ 105 (197)
T 3rd3_A 104 DE 105 (197)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 30
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=32.94 E-value=64 Score=25.38 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHHHHHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhc
Q 014193 290 KEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHS 325 (429)
Q Consensus 290 ~~~~~L~~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~ 325 (429)
++..-+.+.++ .+++..++|+.+||+...|.+.++.
T Consensus 7 ~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 7 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444556677 7789999999999999888887775
No 31
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=32.93 E-value=1.3e+02 Score=24.57 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=27.8
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014193 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (429)
Q Consensus 291 ~~~~L~~~~Gr~Pt~~ewA~aagm~~eeL~~~lk~ 325 (429)
+..-+...++.+++..++|+.+||+...|.+.++.
T Consensus 16 ~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 16 ILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33345566777899999999999999888887775
No 32
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=32.70 E-value=91 Score=25.68 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=45.0
Q ss_pred CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHH
Q 014193 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368 (429)
Q Consensus 303 Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmk 368 (429)
.|..+.|+++|++...+..-...-+.....++..+..-+..........+.+..+.+..-+..++.
T Consensus 32 ~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (204)
T 3eup_A 32 TSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYND 97 (204)
T ss_dssp CCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHG
T ss_pred CCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 589999999999998887777766677777777766665555554444445555555554444444
No 33
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=32.20 E-value=66 Score=25.35 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=27.2
Q ss_pred HHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhcc
Q 014193 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326 (429)
Q Consensus 292 ~~~L~~~~Gr~Pt~~ewA~aagm~~eeL~~~lk~G 326 (429)
..-+...++.+++..++|+.+||+...|.+.++.-
T Consensus 11 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 11 LSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 33445566778899999999999998888777653
No 34
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=32.04 E-value=2.1e+02 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHH
Q 014193 301 REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (429)
Q Consensus 301 r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLI 359 (429)
...|..+.|+++|++...+..-...-++....++..+..-+..........+.+..+-+
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDAAL 89 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 66899999999999999888888777777777777766655554444433334444433
No 35
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=31.67 E-value=2.1e+02 Score=23.20 Aligned_cols=75 Identities=7% Similarity=0.023 Sum_probs=49.8
Q ss_pred hhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHH--HHHHHHcccCCCCHHHHHHHHHHHHHHHHHh
Q 014193 298 QFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLV--VHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372 (429)
Q Consensus 298 ~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV--~sIAkrY~~rGld~eDLIQEG~IGLmkAIeK 372 (429)
+.|- ..|..+.|+++|++...+..-...-+.....++.....-+ ..........+.+..|-+...+..+++.+..
T Consensus 25 ~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 102 (196)
T 3col_A 25 AEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSLA 102 (196)
T ss_dssp HHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHHc
Confidence 3454 4799999999999998888777766666666766666555 4444444444556666666666666655543
No 36
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=31.51 E-value=1.7e+02 Score=23.97 Aligned_cols=68 Identities=9% Similarity=-0.043 Sum_probs=44.8
Q ss_pred CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHH
Q 014193 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (429)
Q Consensus 303 Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAI 370 (429)
.|..+.|+++|++...+..-...-++....++..+..-+..........+.+..|.+...+..++..+
T Consensus 41 ~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 108 (203)
T 3mnl_A 41 VQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGKLNRAM 108 (203)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHCCCGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999888888877667777777666655544433333344555555555554444433
No 37
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=31.22 E-value=2.6e+02 Score=24.20 Aligned_cols=76 Identities=8% Similarity=0.062 Sum_probs=41.1
Q ss_pred HHHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHH
Q 014193 294 KLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369 (429)
Q Consensus 294 ~L~~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkA 369 (429)
++-.+.| ...|..+.|+++|++...+..-....++....++.....-+..........+.+..|-+...+...+..
T Consensus 18 ~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (213)
T 3ni7_A 18 ELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADSRMLKEAESAGFLDLVASERIHHLIMIWLDA 94 (213)
T ss_dssp HHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCccccCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 3444567 457999999999999888777776444444444444333322222111122334445554444444433
No 38
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=31.10 E-value=2.2e+02 Score=23.30 Aligned_cols=76 Identities=14% Similarity=0.004 Sum_probs=53.1
Q ss_pred hhhCCCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHh
Q 014193 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372 (429)
Q Consensus 297 ~~~Gr~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeK 372 (429)
.+.|-..|..+.|+++|++...+..-...-+.....++..+..-+..........+.+..+.+..-.-.++..+..
T Consensus 23 ~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (190)
T 3jsj_A 23 YRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILYVFERVESQAGA 98 (190)
T ss_dssp HHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Confidence 3456558999999999999999988888777777777777766665555444444556666666665555554433
No 39
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=30.21 E-value=80 Score=24.05 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=35.0
Q ss_pred hhhCCCCcH------HHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCC-HHH
Q 014193 297 SQFGREPTL------IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIS-LHD 357 (429)
Q Consensus 297 ~~~Gr~Pt~------~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld-~eD 357 (429)
..+|+.|+. .+|....|++.+-+..+++. |.. -=..+.++|-+|+..+...|+. .+|
T Consensus 12 ~~~gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~---a~~-~~~~s~~Yi~~Il~~W~~~gi~T~e~ 75 (78)
T 2zc2_A 12 RELGRMLSPFELEDLQKTVSDDKTDPDLVRSALRE---AVF-NGKTNWNYIQAILRNWRHEGISTLRQ 75 (78)
T ss_dssp HHHTSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHH---HHH-HTCCCHHHHHHHHHHHHHTTCCSHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH---HHH-cCCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 345665554 34666667776655544432 211 1134789999999999988874 454
No 40
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=28.77 E-value=2.3e+02 Score=22.85 Aligned_cols=79 Identities=9% Similarity=-0.019 Sum_probs=53.8
Q ss_pred HHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHhh
Q 014193 295 LQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373 (429)
Q Consensus 295 L~~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIeKF 373 (429)
+-.+.|- ..|..+.|+++|++...+..-...-++....++..+..-+..........+.+..+.+..-+..+++.+...
T Consensus 20 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 99 (194)
T 2g7s_A 20 LIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADA 99 (194)
T ss_dssp HHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhccC
Confidence 3334563 479999999999999999888887777777777776665554444443334566666766666666665553
No 41
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=28.77 E-value=2.9e+02 Score=24.06 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=49.9
Q ss_pred HhhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccC-C-CCHHHHHHHHHHHHHHHH
Q 014193 296 QSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR-G-ISLHDLLQEGSMGLMKSV 370 (429)
Q Consensus 296 ~~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~r-G-ld~eDLIQEG~IGLmkAI 370 (429)
-.+.|- ..|..+.|+++|++...|..-...-++.+..++..+..-+.......... + .+..+.+..-+..++..+
T Consensus 56 f~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (255)
T 3g1o_A 56 LEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETF 133 (255)
T ss_dssp HTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Confidence 334464 57999999999999998988888777777777777666655555443332 2 366666555555544444
No 42
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=28.54 E-value=2.5e+02 Score=23.13 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=54.7
Q ss_pred hCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCC-CCHHHHHHHHHHHHHHHHHh
Q 014193 299 FGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG-ISLHDLLQEGSMGLMKSVEK 372 (429)
Q Consensus 299 ~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rG-ld~eDLIQEG~IGLmkAIeK 372 (429)
.|- ..|..+.|+++|++...+-.-...-++....++.....-+..........+ .+..+.+...+..+++.+..
T Consensus 32 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 107 (213)
T 2qtq_A 32 GDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPEAKLRRHISKCIDTYYD 107 (213)
T ss_dssp HTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 454 579999999999999999888888777777777777766665555555455 67777777776666666544
No 43
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=28.30 E-value=2.4e+02 Score=22.92 Aligned_cols=71 Identities=7% Similarity=0.072 Sum_probs=45.2
Q ss_pred hhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 014193 297 SQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367 (429)
Q Consensus 297 ~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLm 367 (429)
.+.|- ..|..+.|+++|++...+..-...-++....++.....-+..........+.+..+.+......++
T Consensus 25 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (196)
T 3he0_A 25 AESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYRTMWLNIW 96 (196)
T ss_dssp HHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHHHHHHHHH
T ss_pred HHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 34464 479999999999998888777766666666666666655555444444444455555544444433
No 44
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=28.15 E-value=2.4e+02 Score=23.11 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=43.5
Q ss_pred hhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHH
Q 014193 297 SQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368 (429)
Q Consensus 297 ~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmk 368 (429)
.+.|- ..|..+.|+++|++...+..-...-++....++.....-+..........+.+..+-+...+..+++
T Consensus 30 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (211)
T 3him_A 30 AAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLMSTVTAYVT 102 (211)
T ss_dssp HHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 34564 4799999999999876666555555566666666665555544444444445555555444444443
No 45
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.23 E-value=3e+02 Score=23.63 Aligned_cols=78 Identities=9% Similarity=-0.020 Sum_probs=54.3
Q ss_pred HHhhhCCC-CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHccc--CCCCHHHHHHHHHHHHHHHHH
Q 014193 295 LQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG--RGISLHDLLQEGSMGLMKSVE 371 (429)
Q Consensus 295 L~~~~Gr~-Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~--rGld~eDLIQEG~IGLmkAIe 371 (429)
+-.+.|-. .|..+.|+++|++...+..-...-++....++..+..-+......... .+.+..|.+...+..+++.+.
T Consensus 55 l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (229)
T 3bni_A 55 LLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWRGALDTVLDEYLAMKR 134 (229)
T ss_dssp HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 33345654 799999999999999888888877777777777766655544433322 345677777777777776665
Q ss_pred h
Q 014193 372 K 372 (429)
Q Consensus 372 K 372 (429)
.
T Consensus 135 ~ 135 (229)
T 3bni_A 135 T 135 (229)
T ss_dssp H
T ss_pred h
Confidence 5
No 46
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=26.93 E-value=81 Score=25.39 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhc
Q 014193 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (429)
Q Consensus 291 ~~~~L~~~~Gr~Pt~~ewA~aagm~~eeL~~~lk~ 325 (429)
+..-+...+..+++..++|+.+||+...|.+.++.
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 12 VCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33345556677889999999999999888776654
No 47
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=26.89 E-value=3e+02 Score=23.63 Aligned_cols=74 Identities=9% Similarity=0.067 Sum_probs=49.4
Q ss_pred hhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccC-C-CCHHHHHHHHHHHHHHHH
Q 014193 297 SQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR-G-ISLHDLLQEGSMGLMKSV 370 (429)
Q Consensus 297 ~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~r-G-ld~eDLIQEG~IGLmkAI 370 (429)
.+.|- ..|..+.|+++|++...+..-...-++....++..+..-+.......... + .+..+.+...+..++..+
T Consensus 58 ~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 134 (236)
T 3q0w_A 58 EDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETF 134 (236)
T ss_dssp HHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHcCcccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH
Confidence 34464 57999999999999998888888777777777777766665555444332 2 355665555444444443
No 48
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=25.63 E-value=2.9e+02 Score=22.92 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=51.4
Q ss_pred hhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHH
Q 014193 297 SQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371 (429)
Q Consensus 297 ~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmkAIe 371 (429)
...|- ..|..+.|+++|++...+..-...-++....++..+..-+............+..+.+..-.-.++..+.
T Consensus 25 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (216)
T 3f0c_A 25 AHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKKYVKLRSLHFR 100 (216)
T ss_dssp HHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 34565 4799999999999999888888777777777777776666555555444444666666655554444443
No 49
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=25.38 E-value=2.9e+02 Score=22.95 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=34.8
Q ss_pred HHHHhhhCCCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHH
Q 014193 293 SKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLV 341 (429)
Q Consensus 293 ~~L~~~~Gr~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV 341 (429)
.++-.+.|-..|..+.|+++|++...+..-...-++....++.....-+
T Consensus 23 ~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~ 71 (196)
T 2qwt_A 23 YDTFAAEGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRI 71 (196)
T ss_dssp HHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3344455767899999999999998888777766666655555544433
No 50
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=24.87 E-value=2.4e+02 Score=24.58 Aligned_cols=40 Identities=5% Similarity=0.056 Sum_probs=23.6
Q ss_pred hhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHh
Q 014193 298 QFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINAN 337 (429)
Q Consensus 298 ~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesn 337 (429)
+.|- ..|..+.|+++|++...|..-...-++....++...
T Consensus 61 ~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~~~ 101 (245)
T 3aqt_A 61 ERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAVAEDA 101 (245)
T ss_dssp HHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHHH
T ss_pred hcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHH
Confidence 3463 579999999999876544444443333344444333
No 51
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=24.49 E-value=2.8e+02 Score=22.31 Aligned_cols=75 Identities=7% Similarity=0.096 Sum_probs=49.8
Q ss_pred HHHhhhCCC-CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHHH
Q 014193 294 KLQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368 (429)
Q Consensus 294 ~L~~~~Gr~-Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLmk 368 (429)
++-.+.|-. -|..+.|+++|++...+-.-...-++....++.....-+..........+.+..|.+......++.
T Consensus 19 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (188)
T 3qkx_A 19 RLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPFFEQYRQMWKNIWY 94 (188)
T ss_dssp HHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence 344455644 799999999999999888888776677777777666666555555444445555555544444433
No 52
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.36 E-value=3.1e+02 Score=22.93 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=33.5
Q ss_pred hhCCCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHH
Q 014193 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (429)
Q Consensus 298 ~~Gr~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~ 342 (429)
+.|...|..+.|+++|++...+..-...-+.....++..+..-+.
T Consensus 35 ~~G~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~ 79 (215)
T 2hku_A 35 EHGEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAG 79 (215)
T ss_dssp HHCTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 446668999999999999988888777666666666665554443
No 53
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=23.77 E-value=2.5e+02 Score=24.03 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=29.8
Q ss_pred hCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHH
Q 014193 299 FGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (429)
Q Consensus 299 ~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~ 342 (429)
.|- ..|..+.|+++|++...+..-...-++....++.....-+.
T Consensus 46 ~G~~~~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~ 90 (230)
T 2iai_A 46 RGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELF 90 (230)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred cCccccCHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 354 47999999999998877766665555555555555544443
No 54
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=23.34 E-value=3.2e+02 Score=22.71 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=46.6
Q ss_pred HHhhhCCC-CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 014193 295 LQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367 (429)
Q Consensus 295 L~~~~Gr~-Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLm 367 (429)
|-.+.|-. -|..+.|+++|++...+-.-....++....++..+..-+..........+.+..+-+...+..++
T Consensus 26 lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (204)
T 2ibd_A 26 LFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRATLEALVTTSY 99 (204)
T ss_dssp HHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCchhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33445654 69999999999999988888877777777777766655544443333334454444444333333
No 55
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=23.23 E-value=3e+02 Score=22.28 Aligned_cols=71 Identities=13% Similarity=-0.074 Sum_probs=46.6
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 014193 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367 (429)
Q Consensus 297 ~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~IGLm 367 (429)
.+.| ...|..+.|+++|++...+..-...-++....++.....-+..........+.+..+.+......++
T Consensus 16 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (194)
T 3bqz_B 16 IKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYLYNELSL 87 (194)
T ss_dssp HHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHH
T ss_pred HHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3446 4479999999999999999888887777777777766665554444443334455554444433333
No 56
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=22.58 E-value=3.3e+02 Score=22.49 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=54.5
Q ss_pred HHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcc-cCCCCHHHHHHHHHHHHHHHHH
Q 014193 295 LQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ-GRGISLHDLLQEGSMGLMKSVE 371 (429)
Q Consensus 295 L~~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~-~rGld~eDLIQEG~IGLmkAIe 371 (429)
+-.+.|- ..|..+.|+++|++...+..-...-+.....++..+..-+........ ..+.+..+.+...+..++..+.
T Consensus 22 l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (216)
T 3s5r_A 22 LFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVNRIVNTCE 100 (216)
T ss_dssp HHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTTCCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 3344574 479999999999999999888887778888888887777666665554 4455666666655555554443
No 57
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=22.25 E-value=3.4e+02 Score=22.51 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHhhhCC-CCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHH
Q 014193 295 LQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (429)
Q Consensus 295 L~~~~Gr-~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~ 342 (429)
|-.+.|- .-|..+.|+++|++...+-.-....++....++..+..-+.
T Consensus 26 lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~~ 74 (203)
T 3ccy_A 26 MFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLL 74 (203)
T ss_dssp HHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHHHHHHHHHH
Confidence 3344564 46999999999987665554444444455555554444333
No 58
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=20.66 E-value=3.4e+02 Score=22.32 Aligned_cols=46 Identities=20% Similarity=0.060 Sum_probs=34.6
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHH
Q 014193 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (429)
Q Consensus 297 ~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~ 342 (429)
.+.| ...|..+.|+++|++...+..-...-+.....++..+..-+.
T Consensus 40 ~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 86 (217)
T 3mvp_A 40 SDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYNDFFL 86 (217)
T ss_dssp HHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHcCccccCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3446 357999999999999988888887766767777766655554
No 59
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=20.66 E-value=4.7e+02 Score=23.54 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHhhhCCC-CcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHH
Q 014193 293 SKLQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (429)
Q Consensus 293 ~~L~~~~Gr~-Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~ 342 (429)
.+|-.+.|-. .|..+.|+++|++...|..-...-++....++......+.
T Consensus 51 ~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~hF~sKe~Ll~av~~~~~~~~~ 101 (273)
T 3c07_A 51 MRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHR 101 (273)
T ss_dssp HHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3344455644 6999999999999988888776666666666665554443
No 60
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=20.48 E-value=3.7e+02 Score=22.29 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=42.3
Q ss_pred HHhhhC-CCCcHHHHHHHhcCCHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHcccCCCCHHHHHHHHH
Q 014193 295 LQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 363 (429)
Q Consensus 295 L~~~~G-r~Pt~~ewA~aagm~~eeL~~~lk~G~~Are~LIesnL~LV~sIAkrY~~rGld~eDLIQEG~ 363 (429)
+-.+.| ...|..+.|+++|++...+..-...-++....++.....-+..........+.+..+-+..-+
T Consensus 23 lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (212)
T 2ras_A 23 IVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVLASDLPPRRKMYEFF 92 (212)
T ss_dssp HHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 333456 457999999999999888877776666666666666555544444333333334444443333
No 61
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=20.10 E-value=69 Score=30.84 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 014193 269 LLTADEEFELIAQIQDLI 286 (429)
Q Consensus 269 lLT~EEE~eL~~~Iq~l~ 286 (429)
|||.|+|++++++|..+.
T Consensus 1 LLTREgEI~IAKRIE~G~ 18 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGI 18 (339)
T ss_dssp ---CCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 799999999999999864
Done!