BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014196
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
Query: 108 KLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDA 167
+++ + GV+ LV ++ + A++A+ + GT +++AG L P +
Sbjct: 287 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 346
Query: 168 VDESTRHEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226
+ + E I + + ++PFLVG+L S + +T++ A+ N +
Sbjct: 347 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKAAAWAITNYT 405
Query: 227 A--VLDNARPMVSNGVVHTLLKLCSMKE 252
+ ++ +V G++ L+ L S K+
Sbjct: 406 SGGTVEQIVYLVHCGIIEPLMNLLSAKD 433
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 250 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 309
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLSA--VLD 230
E I + + ++PFLVG+L S + +T++ A+ N ++ ++
Sbjct: 310 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 368
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 369 QIVYLVHCGIIEPLMNLLSAKD 390
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 109 LMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAV 168
++ + GV+ LV ++ + A++A+ + GT ++++AG L P +
Sbjct: 220 MVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNP 279
Query: 169 DESTRHEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS- 226
+ + E I + + ++PFLV +L S + +T++ + A+ N +
Sbjct: 280 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVL-SKADFKTQKEAVWAVTNYTS 338
Query: 227 -AVLDNARPMVSNGVVHTLLKLCSMKE 252
++ +V G++ L+ L + K+
Sbjct: 339 GGTVEQIVYLVHCGIIEPLMNLLTAKD 365
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 260 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 319
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 320 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 378
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 379 QIVYLVHCGIIEPLMNLLSAKD 400
>pdb|2VKD|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKH|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
Length = 546
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 163 KNVDAVDESTRHEFGEXXXXXXXXANTHIPLSSSEILPFLVGILESGSSVETK------- 215
KN D +DE + F + +PL ++ P V I + +SV +
Sbjct: 333 KNFDMLDEEVQRSFESALSSKSDKSEIFLPLDDIKVSPLEVKIAFANNSVINQALISLKD 392
Query: 216 ----ELCIGALYNLSAVL-DNARPMVSNGV-VHTLLKLCSMK 251
+L I + N +L DN P ++ G +T +K+ S K
Sbjct: 393 SYCSDLVINQIKNRYKILNDNLNPSINEGTDFNTTMKIFSDK 434
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 224 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 283
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 284 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 342
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 343 QIVYLVHCGIIEPLMNLLSAKD 364
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 392
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKD 414
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 258 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 317
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 318 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 376
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 377 QIVYLVHCGIIEPLMNLLSAKD 398
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 223 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 282
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 283 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 341
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 342 QIVYLVHCGIIEPLMNLLSAKD 363
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 223 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 282
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 283 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 341
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 342 QIVYLVHCGIIEPLMNLLSAKD 363
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 224 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 283
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 284 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 342
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 343 QIVYLVHCGIIEPLMNLLSAKD 364
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 224 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 283
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 284 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 342
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 343 QIVYLVHCGIIEPLMNLLSAKD 364
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 230 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 289
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 290 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 348
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 349 QIVYLVHCGIIEPLMNLLSAKD 370
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 219 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 278
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 279 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 337
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 338 QIVYLVHCGIIEPLMNLLSAKD 359
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 219 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 278
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 279 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 337
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 338 QIVYLVHCGIIEPLMNLLSAKD 359
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 392
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKD 414
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
GV+ LV ++ + A++A+ + GT +++AG L P + + +
Sbjct: 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333
Query: 174 HEFGEXXXXXXXXANTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS--AVLD 230
E I + + ++PFLVG+L S + +T++ A+ N + ++
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVE 392
Query: 231 NARPMVSNGVVHTLLKLCSMKE 252
+V G++ L+ L S K+
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKD 414
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 187 ANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLK 246
A+ H + S +++ +V +++ + VET G L+NLS + + +G + L+K
Sbjct: 46 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK 105
Query: 247 -LCSMKERLSEKSLATLGNLVVTSTGKK 273
L S + + ++ TL NL++ G K
Sbjct: 106 MLGSPVDSVLFYAITTLHNLLLHQEGAK 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,933,377
Number of Sequences: 62578
Number of extensions: 337865
Number of successful extensions: 965
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 49
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)