Query 014196
Match_columns 429
No_of_seqs 384 out of 1743
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 7.7E-30 1.7E-34 287.1 30.9 282 70-353 11-313 (2102)
2 KOG0166 Karyopherin (importin) 100.0 4.8E-30 1E-34 255.8 22.9 282 71-354 108-395 (514)
3 PLN03200 cellulose synthase-in 100.0 1.6E-28 3.5E-33 276.5 28.7 279 71-353 445-765 (2102)
4 KOG4224 Armadillo repeat prote 100.0 4.5E-27 9.7E-32 220.9 18.2 315 72-391 126-445 (550)
5 COG5064 SRP1 Karyopherin (impo 99.9 1.3E-27 2.9E-32 222.7 14.1 282 69-353 111-399 (526)
6 KOG4224 Armadillo repeat prote 99.9 2.8E-26 6E-31 215.6 22.7 277 71-352 207-493 (550)
7 KOG0166 Karyopherin (importin) 99.9 1.2E-25 2.7E-30 224.3 21.5 321 71-396 65-397 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 2.2E-21 4.9E-26 181.3 17.3 303 45-354 132-445 (526)
9 PF05804 KAP: Kinesin-associat 99.9 2.3E-19 5E-24 188.4 26.6 321 71-398 289-655 (708)
10 KOG1048 Neural adherens juncti 99.8 5.6E-20 1.2E-24 189.2 18.5 326 72-398 233-647 (717)
11 PF05804 KAP: Kinesin-associat 99.8 1E-17 2.3E-22 176.1 25.7 259 90-354 267-566 (708)
12 KOG4199 Uncharacterized conser 99.8 2E-16 4.4E-21 148.1 25.6 239 113-352 144-403 (461)
13 KOG2122 Beta-catenin-binding p 99.7 9.2E-17 2E-21 171.7 15.4 260 91-354 317-603 (2195)
14 KOG4199 Uncharacterized conser 99.7 6.4E-15 1.4E-19 138.2 21.4 279 71-351 144-443 (461)
15 PF04826 Arm_2: Armadillo-like 99.6 8.4E-14 1.8E-18 130.9 20.0 192 70-268 10-206 (254)
16 KOG1048 Neural adherens juncti 99.6 3.5E-13 7.6E-18 139.4 22.2 281 71-353 274-685 (717)
17 PF04826 Arm_2: Armadillo-like 99.5 2.1E-12 4.5E-17 121.5 16.6 194 110-310 8-205 (254)
18 PF10508 Proteasom_PSMB: Prote 99.5 2E-11 4.3E-16 126.7 24.5 278 70-352 75-366 (503)
19 KOG2122 Beta-catenin-binding p 99.3 1.7E-11 3.7E-16 132.2 15.8 277 73-351 236-558 (2195)
20 PF10508 Proteasom_PSMB: Prote 99.3 9.7E-11 2.1E-15 121.6 21.0 307 77-393 43-367 (503)
21 KOG1222 Kinesin associated pro 99.3 7.6E-11 1.6E-15 115.5 17.5 315 72-396 304-667 (791)
22 cd00020 ARM Armadillo/beta-cat 99.3 2E-11 4.4E-16 101.2 10.6 118 109-227 2-120 (120)
23 KOG1222 Kinesin associated pro 99.3 2.9E-10 6.3E-15 111.5 18.9 281 49-335 237-559 (791)
24 cd00020 ARM Armadillo/beta-cat 99.3 5.8E-11 1.3E-15 98.4 12.1 114 71-184 6-119 (120)
25 PRK09687 putative lyase; Provi 99.2 9.5E-10 2.1E-14 105.5 19.3 263 17-348 12-278 (280)
26 PRK09687 putative lyase; Provi 99.2 8.9E-10 1.9E-14 105.7 17.3 253 74-389 25-279 (280)
27 KOG4500 Rho/Rac GTPase guanine 99.1 5.1E-09 1.1E-13 101.8 18.3 280 71-352 86-390 (604)
28 cd00256 VATPase_H VATPase_H, r 99.0 3E-08 6.5E-13 99.4 20.4 277 74-351 103-424 (429)
29 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.5E-08 3.3E-13 99.1 13.9 249 93-342 31-304 (312)
30 PF04564 U-box: U-box domain; 98.9 5.4E-10 1.2E-14 84.7 1.6 53 1-54 14-71 (73)
31 PRK13800 putative oxidoreducta 98.9 4.3E-07 9.4E-12 100.9 24.0 255 74-388 623-895 (897)
32 KOG0168 Putative ubiquitin fus 98.8 2.4E-07 5.2E-12 96.7 19.1 258 71-334 166-437 (1051)
33 KOG4500 Rho/Rac GTPase guanine 98.8 2.7E-07 5.8E-12 90.0 16.9 275 72-351 223-518 (604)
34 KOG0946 ER-Golgi vesicle-tethe 98.8 9.2E-07 2E-11 91.9 21.7 273 66-344 16-338 (970)
35 PF03224 V-ATPase_H_N: V-ATPas 98.8 5.1E-08 1.1E-12 95.4 11.5 176 73-250 106-294 (312)
36 PRK13800 putative oxidoreducta 98.7 1.4E-06 3.1E-11 96.8 22.6 225 114-390 621-865 (897)
37 KOG2160 Armadillo/beta-catenin 98.6 2.8E-06 6.1E-11 81.8 17.8 184 83-267 94-282 (342)
38 KOG4646 Uncharacterized conser 98.6 1.4E-06 3E-11 72.4 12.6 116 70-187 14-130 (173)
39 PF01602 Adaptin_N: Adaptin N 98.5 2.1E-05 4.6E-10 82.4 22.7 276 38-353 53-334 (526)
40 PF00514 Arm: Armadillo/beta-c 98.5 2.5E-07 5.3E-12 61.7 4.9 41 103-143 1-41 (41)
41 KOG2160 Armadillo/beta-catenin 98.5 5.6E-06 1.2E-10 79.8 16.0 183 168-352 95-283 (342)
42 KOG0168 Putative ubiquitin fus 98.5 3.3E-06 7.1E-11 88.5 14.8 213 71-290 210-436 (1051)
43 KOG3678 SARM protein (with ste 98.4 2E-05 4.4E-10 77.8 17.3 261 72-353 180-453 (832)
44 KOG4646 Uncharacterized conser 98.3 6E-06 1.3E-10 68.7 10.2 134 195-330 14-148 (173)
45 cd00256 VATPase_H VATPase_H, r 98.3 4.5E-05 9.7E-10 76.8 17.5 315 72-391 53-424 (429)
46 PF01602 Adaptin_N: Adaptin N 98.3 3.5E-05 7.6E-10 80.7 17.7 253 71-351 113-368 (526)
47 smart00504 Ubox Modified RING 98.1 1.6E-06 3.5E-11 63.5 2.3 49 1-50 11-63 (63)
48 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00052 1.1E-08 68.5 20.1 253 94-352 5-269 (371)
49 KOG2973 Uncharacterized conser 98.1 0.00081 1.8E-08 63.7 19.6 271 73-352 4-315 (353)
50 KOG2759 Vacuolar H+-ATPase V1 98.0 0.00021 4.6E-09 70.1 16.2 275 74-351 116-437 (442)
51 KOG1293 Proteins containing ar 98.0 0.00018 3.8E-09 74.2 16.0 152 125-277 388-544 (678)
52 PF05536 Neurochondrin: Neuroc 98.0 0.00035 7.6E-09 73.2 18.1 153 116-268 7-169 (543)
53 PTZ00429 beta-adaptin; Provisi 97.9 0.0052 1.1E-07 66.6 26.1 257 71-351 67-325 (746)
54 PTZ00429 beta-adaptin; Provisi 97.9 0.0036 7.7E-08 67.8 24.2 245 39-311 80-327 (746)
55 smart00185 ARM Armadillo/beta- 97.9 3.1E-05 6.6E-10 51.1 5.2 40 104-143 2-41 (41)
56 PF00514 Arm: Armadillo/beta-c 97.9 3.7E-05 8E-10 51.1 5.5 41 312-352 1-41 (41)
57 KOG0946 ER-Golgi vesicle-tethe 97.9 0.00023 4.9E-09 74.6 13.3 192 156-351 22-240 (970)
58 KOG1293 Proteins containing ar 97.8 9.9E-05 2.1E-09 75.9 10.4 144 85-229 390-535 (678)
59 KOG2734 Uncharacterized conser 97.8 0.0019 4.1E-08 63.9 18.8 240 70-310 123-400 (536)
60 TIGR02270 conserved hypothetic 97.8 0.0023 4.9E-08 64.7 19.9 223 71-354 53-298 (410)
61 PF05536 Neurochondrin: Neuroc 97.8 0.00041 8.9E-09 72.7 14.8 181 160-348 9-209 (543)
62 KOG3678 SARM protein (with ste 97.7 0.00022 4.8E-09 70.7 10.7 171 149-324 173-349 (832)
63 KOG2171 Karyopherin (importin) 97.7 0.0065 1.4E-07 66.6 22.5 272 73-355 203-507 (1075)
64 KOG2171 Karyopherin (importin) 97.7 0.001 2.2E-08 72.7 16.3 174 74-251 350-528 (1075)
65 KOG2973 Uncharacterized conser 97.7 0.0035 7.5E-08 59.5 17.1 224 71-301 43-306 (353)
66 PF14664 RICTOR_N: Rapamycin-i 97.6 0.014 3.1E-07 58.3 21.3 269 76-351 29-363 (371)
67 PF13646 HEAT_2: HEAT repeats; 97.5 0.00018 4E-09 56.0 5.5 87 116-223 1-88 (88)
68 KOG1059 Vesicle coat complex A 97.5 0.01 2.2E-07 62.1 18.9 257 71-350 143-441 (877)
69 KOG1789 Endocytosis protein RM 97.5 0.0071 1.5E-07 65.5 17.7 135 90-226 1743-1882(2235)
70 PF12348 CLASP_N: CLASP N term 97.4 0.0014 3E-08 60.9 11.0 179 82-267 17-206 (228)
71 PF09759 Atx10homo_assoc: Spin 97.4 0.00076 1.7E-08 54.1 7.4 68 88-155 2-71 (102)
72 KOG2734 Uncharacterized conser 97.4 0.0087 1.9E-07 59.3 15.9 237 92-332 104-370 (536)
73 PF13646 HEAT_2: HEAT repeats; 97.4 0.00047 1E-08 53.6 6.1 85 74-180 1-87 (88)
74 KOG2759 Vacuolar H+-ATPase V1 97.4 0.0043 9.4E-08 61.2 13.8 227 79-309 163-437 (442)
75 KOG2023 Nuclear transport rece 97.3 0.0093 2E-07 61.9 16.4 270 71-353 127-464 (885)
76 TIGR02270 conserved hypothetic 97.3 0.023 5.1E-07 57.5 19.3 190 115-353 55-268 (410)
77 PF10165 Ric8: Guanine nucleot 97.3 0.037 8.1E-07 56.8 21.0 229 83-312 43-339 (446)
78 PF10165 Ric8: Guanine nucleot 97.3 0.016 3.5E-07 59.5 18.0 259 93-352 2-337 (446)
79 KOG0212 Uncharacterized conser 97.2 0.01 2.2E-07 60.6 14.9 256 40-310 180-444 (675)
80 KOG2259 Uncharacterized conser 97.2 0.0029 6.3E-08 65.4 11.1 254 72-352 198-475 (823)
81 COG1413 FOG: HEAT repeat [Ener 97.1 0.06 1.3E-06 53.0 19.7 185 72-308 43-240 (335)
82 PF12348 CLASP_N: CLASP N term 97.0 0.0081 1.8E-07 55.7 11.2 179 167-352 18-206 (228)
83 PF11841 DUF3361: Domain of un 97.0 0.017 3.6E-07 50.2 12.0 127 192-320 6-142 (160)
84 smart00185 ARM Armadillo/beta- 96.9 0.0022 4.8E-08 42.0 5.1 39 313-351 2-40 (41)
85 COG1413 FOG: HEAT repeat [Ener 96.9 0.038 8.3E-07 54.4 15.8 186 114-352 43-242 (335)
86 KOG1062 Vesicle coat complex A 96.9 0.15 3.2E-06 54.4 20.1 253 70-335 140-453 (866)
87 COG5369 Uncharacterized conser 96.9 0.013 2.8E-07 59.5 11.8 197 135-333 410-618 (743)
88 KOG1241 Karyopherin (importin) 96.9 0.058 1.3E-06 57.0 16.9 296 85-397 187-535 (859)
89 KOG1517 Guanine nucleotide bin 96.8 0.17 3.7E-06 55.4 20.5 193 72-267 472-671 (1387)
90 KOG1242 Protein containing ada 96.8 0.028 6.1E-07 58.1 13.8 227 113-354 212-447 (569)
91 PF13513 HEAT_EZ: HEAT-like re 96.8 0.003 6.4E-08 44.6 5.0 55 86-141 1-55 (55)
92 KOG4413 26S proteasome regulat 96.7 0.12 2.7E-06 49.6 16.9 274 74-352 84-377 (524)
93 PF09759 Atx10homo_assoc: Spin 96.7 0.011 2.4E-07 47.5 8.0 68 254-322 2-71 (102)
94 KOG1242 Protein containing ada 96.6 0.16 3.4E-06 52.7 17.6 300 73-397 135-449 (569)
95 KOG4413 26S proteasome regulat 96.5 0.1 2.2E-06 50.2 14.5 235 116-354 84-335 (524)
96 COG5369 Uncharacterized conser 96.5 0.017 3.6E-07 58.7 9.7 191 91-282 408-610 (743)
97 PF11698 V-ATPase_H_C: V-ATPas 96.3 0.018 3.9E-07 47.5 7.5 74 70-143 41-115 (119)
98 KOG1058 Vesicle coat complex C 96.3 0.13 2.8E-06 54.5 15.3 25 243-267 321-346 (948)
99 KOG0212 Uncharacterized conser 96.2 0.24 5.2E-06 50.9 16.2 223 126-354 179-408 (675)
100 PF13513 HEAT_EZ: HEAT-like re 96.2 0.0085 1.8E-07 42.2 4.3 55 295-350 1-55 (55)
101 KOG1241 Karyopherin (importin) 96.2 0.6 1.3E-05 49.7 19.1 230 74-310 366-626 (859)
102 KOG1789 Endocytosis protein RM 96.1 0.13 2.8E-06 56.3 14.0 135 175-310 1744-1883(2235)
103 KOG4642 Chaperone-dependent E3 96.0 0.0057 1.2E-07 56.1 3.4 53 1-54 221-278 (284)
104 KOG2023 Nuclear transport rece 96.0 0.025 5.5E-07 58.8 8.1 167 115-287 129-306 (885)
105 KOG1077 Vesicle coat complex A 96.0 2.5 5.5E-05 44.8 22.4 181 90-282 307-503 (938)
106 KOG1062 Vesicle coat complex A 96.0 1.7 3.7E-05 46.6 21.4 223 73-307 180-467 (866)
107 COG5096 Vesicle coat complex, 95.5 0.4 8.8E-06 51.7 15.0 158 42-228 39-196 (757)
108 KOG0213 Splicing factor 3b, su 95.4 0.73 1.6E-05 49.0 16.2 145 201-352 803-954 (1172)
109 COG5240 SEC21 Vesicle coat com 95.3 0.93 2E-05 46.9 16.3 253 79-354 271-557 (898)
110 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.038 8.1E-07 44.2 5.2 68 197-267 27-96 (97)
111 PF04063 DUF383: Domain of unk 95.2 0.18 3.9E-06 45.5 10.0 118 214-333 11-157 (192)
112 PF04078 Rcd1: Cell differenti 95.1 1.3 2.8E-05 41.6 15.4 196 77-277 2-228 (262)
113 KOG0213 Splicing factor 3b, su 95.1 0.92 2E-05 48.3 15.6 257 73-352 800-1065(1172)
114 KOG1061 Vesicle coat complex A 95.0 0.19 4.2E-06 53.3 10.8 70 73-145 122-191 (734)
115 KOG2259 Uncharacterized conser 94.9 0.45 9.7E-06 49.9 12.6 180 72-262 234-470 (823)
116 KOG3036 Protein involved in ce 94.8 1.2 2.5E-05 41.5 13.9 177 174-351 97-290 (293)
117 KOG1824 TATA-binding protein-i 94.8 2.4 5.3E-05 46.4 18.1 263 76-351 9-285 (1233)
118 COG5096 Vesicle coat complex, 94.7 0.73 1.6E-05 49.8 14.3 138 29-185 58-195 (757)
119 KOG1517 Guanine nucleotide bin 94.5 0.78 1.7E-05 50.6 13.8 156 195-354 510-673 (1387)
120 PF05918 API5: Apoptosis inhib 94.5 1.7 3.6E-05 45.6 15.9 134 71-223 22-158 (556)
121 COG5181 HSH155 U2 snRNP splice 94.4 2.7 5.9E-05 44.0 16.8 255 71-352 603-870 (975)
122 KOG3036 Protein involved in ce 94.4 4.3 9.4E-05 37.8 18.4 147 129-277 94-257 (293)
123 PF02985 HEAT: HEAT repeat; I 94.3 0.057 1.2E-06 33.2 3.1 30 115-144 1-30 (31)
124 COG5215 KAP95 Karyopherin (imp 94.3 3.6 7.9E-05 42.7 17.3 264 75-353 136-438 (858)
125 PF14668 RICTOR_V: Rapamycin-i 94.2 0.16 3.5E-06 38.1 6.0 65 215-279 4-70 (73)
126 PF04063 DUF383: Domain of unk 94.0 0.15 3.2E-06 46.1 6.4 122 127-250 8-158 (192)
127 COG5215 KAP95 Karyopherin (imp 94.0 2.4 5.2E-05 44.0 15.4 250 85-352 191-479 (858)
128 PF11841 DUF3361: Domain of un 93.8 1 2.2E-05 39.3 10.8 118 233-351 5-130 (160)
129 PF08045 CDC14: Cell division 93.8 0.51 1.1E-05 44.5 9.7 96 88-183 107-205 (257)
130 PF13764 E3_UbLigase_R4: E3 ub 93.7 8.1 0.00018 42.6 20.0 179 108-290 111-329 (802)
131 KOG2611 Neurochondrin/leucine- 93.7 1.2 2.6E-05 45.2 12.4 128 120-249 17-162 (698)
132 KOG1824 TATA-binding protein-i 93.6 2.4 5.1E-05 46.5 15.2 138 71-211 610-748 (1233)
133 COG5231 VMA13 Vacuolar H+-ATPa 93.6 0.75 1.6E-05 44.3 10.4 228 122-351 157-427 (432)
134 PF04078 Rcd1: Cell differenti 93.5 1 2.2E-05 42.4 11.0 194 127-321 8-228 (262)
135 KOG4151 Myosin assembly protei 93.4 1.3 2.8E-05 47.5 12.9 220 104-332 494-721 (748)
136 PF06371 Drf_GBD: Diaphanous G 93.4 0.26 5.7E-06 44.0 7.0 108 198-309 67-186 (187)
137 PF07814 WAPL: Wings apart-lik 93.2 2.4 5.1E-05 42.4 14.1 239 71-327 20-316 (361)
138 PF12031 DUF3518: Domain of un 93.1 0.6 1.3E-05 43.2 8.8 95 214-342 140-235 (257)
139 COG5181 HSH155 U2 snRNP splice 92.9 0.73 1.6E-05 48.0 9.9 224 116-352 606-848 (975)
140 KOG1078 Vesicle coat complex C 92.9 2.4 5.2E-05 45.5 13.9 251 75-352 248-532 (865)
141 PF12755 Vac14_Fab1_bd: Vacuol 92.9 0.7 1.5E-05 36.9 7.9 89 89-183 3-94 (97)
142 KOG1061 Vesicle coat complex A 92.9 4.5 9.8E-05 43.4 15.9 245 71-342 48-298 (734)
143 PF06371 Drf_GBD: Diaphanous G 92.7 1.2 2.7E-05 39.5 10.4 110 72-184 66-186 (187)
144 KOG2999 Regulator of Rac1, req 92.5 1.6 3.5E-05 45.0 11.6 147 162-310 89-242 (713)
145 PF05004 IFRD: Interferon-rela 92.4 5 0.00011 39.2 14.7 184 165-353 52-258 (309)
146 COG5240 SEC21 Vesicle coat com 91.7 19 0.00041 37.7 22.5 229 94-353 249-478 (898)
147 KOG1058 Vesicle coat complex C 91.6 23 0.00049 38.4 19.1 203 85-313 219-466 (948)
148 PF08045 CDC14: Cell division 91.5 1.9 4.2E-05 40.6 10.2 99 253-352 106-208 (257)
149 KOG1077 Vesicle coat complex A 91.4 11 0.00024 40.3 16.4 86 73-168 112-199 (938)
150 KOG1060 Vesicle coat complex A 91.1 26 0.00057 38.1 20.3 165 83-264 154-347 (968)
151 PF12717 Cnd1: non-SMC mitotic 90.8 1.7 3.7E-05 38.6 9.0 93 85-186 1-93 (178)
152 KOG0211 Protein phosphatase 2A 90.3 8.3 0.00018 42.2 15.0 331 39-397 328-669 (759)
153 KOG1248 Uncharacterized conser 90.3 5.4 0.00012 44.8 13.6 213 126-349 666-895 (1176)
154 PF05004 IFRD: Interferon-rela 90.3 15 0.00032 35.9 15.6 193 73-267 44-260 (309)
155 cd03567 VHS_GGA VHS domain fam 90.1 7.6 0.00016 33.1 11.8 100 28-143 10-116 (139)
156 PF02985 HEAT: HEAT repeat; I 89.8 0.5 1.1E-05 28.9 3.3 28 199-227 2-29 (31)
157 PF06025 DUF913: Domain of Unk 89.4 10 0.00022 38.2 14.0 186 92-277 4-243 (379)
158 KOG1059 Vesicle coat complex A 89.2 11 0.00023 40.5 14.1 101 117-227 147-248 (877)
159 KOG1240 Protein kinase contain 89.0 8.9 0.00019 43.4 14.0 228 73-310 463-725 (1431)
160 KOG4151 Myosin assembly protei 89.0 1.3 2.7E-05 47.6 7.5 152 74-226 543-698 (748)
161 PF08569 Mo25: Mo25-like; Int 88.9 6.7 0.00015 38.7 12.1 191 73-269 77-285 (335)
162 KOG2999 Regulator of Rac1, req 88.8 4.8 0.0001 41.7 11.1 151 199-351 85-241 (713)
163 KOG2611 Neurochondrin/leucine- 88.4 21 0.00045 36.6 15.0 118 189-309 48-181 (698)
164 KOG0567 HEAT repeat-containing 88.2 24 0.00051 33.4 15.3 199 112-352 65-280 (289)
165 KOG1240 Protein kinase contain 87.9 5.6 0.00012 44.9 11.6 254 86-353 437-726 (1431)
166 cd03569 VHS_Hrs_Vps27p VHS dom 87.4 4.1 8.9E-05 34.9 8.5 74 70-143 39-114 (142)
167 KOG1943 Beta-tubulin folding c 87.2 15 0.00032 41.2 14.2 149 113-267 340-500 (1133)
168 PRK14707 hypothetical protein; 87.1 40 0.00087 40.8 18.0 182 168-354 344-532 (2710)
169 KOG1943 Beta-tubulin folding c 87.0 59 0.0013 36.7 18.8 240 72-340 341-599 (1133)
170 PF11698 V-ATPase_H_C: V-ATPas 86.6 0.99 2.1E-05 37.3 4.0 70 282-351 45-114 (119)
171 KOG0211 Protein phosphatase 2A 85.5 40 0.00088 37.0 16.6 175 70-252 234-411 (759)
172 PF12717 Cnd1: non-SMC mitotic 85.2 13 0.00028 32.9 10.9 68 72-144 25-93 (178)
173 KOG4535 HEAT and armadillo rep 85.1 0.97 2.1E-05 45.8 3.8 150 116-267 435-603 (728)
174 KOG0289 mRNA splicing factor [ 84.6 3 6.6E-05 41.7 6.9 40 3-42 12-55 (506)
175 KOG0915 Uncharacterized conser 84.5 67 0.0015 37.7 17.9 306 85-405 970-1319(1702)
176 cd03561 VHS VHS domain family; 84.5 8 0.00017 32.6 8.8 75 70-144 35-113 (133)
177 PF08569 Mo25: Mo25-like; Int 84.1 20 0.00044 35.4 12.6 203 149-355 69-286 (335)
178 COG5209 RCD1 Uncharacterized p 83.4 4.2 9.1E-05 37.4 6.8 99 253-352 115-218 (315)
179 cd03568 VHS_STAM VHS domain fa 83.4 8.7 0.00019 33.0 8.6 101 28-144 9-111 (144)
180 KOG1243 Protein kinase [Genera 83.3 65 0.0014 34.6 16.3 296 27-349 202-512 (690)
181 PF10363 DUF2435: Protein of u 83.1 4.1 8.8E-05 32.1 5.9 72 72-145 3-74 (92)
182 PF14225 MOR2-PAG1_C: Cell mor 82.6 45 0.00098 31.7 14.4 66 197-266 188-253 (262)
183 PF14668 RICTOR_V: Rapamycin-i 82.3 6.2 0.00014 29.6 6.3 67 255-323 4-70 (73)
184 KOG1248 Uncharacterized conser 82.1 19 0.00042 40.6 12.5 182 76-266 701-897 (1176)
185 PF12031 DUF3518: Domain of un 82.1 2.1 4.6E-05 39.7 4.5 124 128-251 80-228 (257)
186 PF12719 Cnd3: Nuclear condens 81.9 21 0.00046 34.4 11.8 166 114-290 26-207 (298)
187 PRK14707 hypothetical protein; 81.3 1.1E+02 0.0024 37.5 18.2 141 209-354 344-490 (2710)
188 PF12719 Cnd3: Nuclear condens 81.2 54 0.0012 31.6 15.9 168 74-250 28-208 (298)
189 smart00288 VHS Domain present 81.1 12 0.00027 31.5 8.6 74 70-143 35-111 (133)
190 KOG4653 Uncharacterized conser 80.7 42 0.00091 36.9 14.0 75 69-144 724-798 (982)
191 KOG2025 Chromosome condensatio 80.0 10 0.00022 40.6 9.0 126 113-246 84-214 (892)
192 PF06025 DUF913: Domain of Unk 79.9 26 0.00056 35.3 11.8 118 115-232 107-237 (379)
193 PF11701 UNC45-central: Myosin 79.8 14 0.00031 32.1 8.8 143 199-347 5-154 (157)
194 KOG1820 Microtubule-associated 79.5 47 0.001 36.8 14.4 182 76-266 257-442 (815)
195 PF05918 API5: Apoptosis inhib 78.3 6.3 0.00014 41.4 7.0 70 70-144 57-126 (556)
196 COG5209 RCD1 Uncharacterized p 77.6 19 0.00042 33.2 9.0 146 175-321 119-278 (315)
197 KOG2956 CLIP-associating prote 76.4 97 0.0021 31.8 15.9 181 72-266 286-476 (516)
198 KOG4535 HEAT and armadillo rep 76.1 3.2 6.9E-05 42.3 4.0 99 212-310 498-603 (728)
199 KOG0301 Phospholipase A2-activ 75.9 64 0.0014 34.5 13.3 159 85-250 557-727 (745)
200 KOG0414 Chromosome condensatio 75.1 13 0.00028 42.0 8.5 139 115-267 920-1064(1251)
201 COG5231 VMA13 Vacuolar H+-ATPa 75.0 5 0.00011 38.9 4.8 70 72-141 356-426 (432)
202 KOG2042 Ubiquitin fusion degra 74.4 2.6 5.6E-05 46.6 3.1 54 1-54 880-937 (943)
203 KOG1788 Uncharacterized conser 73.4 1.1E+02 0.0023 35.0 14.5 249 94-352 664-982 (2799)
204 PF00790 VHS: VHS domain; Int 73.3 17 0.00036 30.9 7.3 73 70-142 40-117 (140)
205 PF08324 PUL: PUL domain; Int 72.8 85 0.0018 29.5 13.2 142 199-346 108-268 (268)
206 PF13764 E3_UbLigase_R4: E3 ub 72.8 24 0.00051 39.0 9.9 130 192-321 112-269 (802)
207 PF11789 zf-Nse: Zinc-finger o 72.4 0.78 1.7E-05 32.7 -0.9 21 2-22 22-44 (57)
208 PF08167 RIX1: rRNA processing 70.8 11 0.00025 33.0 5.9 106 160-267 29-143 (165)
209 KOG2933 Uncharacterized conser 70.5 38 0.00082 32.8 9.5 138 71-221 87-228 (334)
210 KOG1060 Vesicle coat complex A 69.7 99 0.0021 33.9 13.2 64 75-144 38-101 (968)
211 PF08216 CTNNBL: Catenin-beta- 69.3 21 0.00045 29.0 6.5 81 36-131 21-104 (108)
212 COG5218 YCG1 Chromosome conden 69.2 23 0.00051 37.2 8.3 117 113-237 90-206 (885)
213 PF12460 MMS19_C: RNAPII trans 68.1 32 0.00068 35.0 9.3 110 116-229 273-396 (415)
214 KOG1820 Microtubule-associated 67.2 1E+02 0.0022 34.3 13.2 168 170-345 267-436 (815)
215 KOG1967 DNA repair/transcripti 66.9 22 0.00047 39.3 7.9 145 113-261 866-1018(1030)
216 KOG3665 ZYG-1-like serine/thre 66.4 93 0.002 34.1 12.8 194 137-347 494-692 (699)
217 KOG0567 HEAT repeat-containing 63.9 55 0.0012 31.1 9.0 117 74-223 156-276 (289)
218 KOG3665 ZYG-1-like serine/thre 63.8 93 0.002 34.1 12.2 154 95-249 494-677 (699)
219 KOG0414 Chromosome condensatio 63.4 83 0.0018 36.0 11.6 148 84-251 935-1083(1251)
220 PF08324 PUL: PUL domain; Int 62.6 42 0.0009 31.7 8.5 161 74-237 65-241 (268)
221 KOG2956 CLIP-associating prote 61.5 1.2E+02 0.0025 31.3 11.4 152 198-361 330-487 (516)
222 KOG2062 26S proteasome regulat 61.5 39 0.00083 36.6 8.3 120 73-210 555-678 (929)
223 COG5098 Chromosome condensatio 61.3 38 0.00083 36.4 8.2 153 197-355 240-419 (1128)
224 KOG1078 Vesicle coat complex C 60.6 2.6E+02 0.0057 30.7 20.7 67 116-187 247-313 (865)
225 PF14726 RTTN_N: Rotatin, an a 60.5 58 0.0013 25.9 7.4 63 113-176 29-91 (98)
226 KOG1967 DNA repair/transcripti 59.8 21 0.00045 39.4 6.2 110 69-179 906-1018(1030)
227 KOG2032 Uncharacterized conser 58.8 1.7E+02 0.0037 30.3 12.0 152 112-267 252-415 (533)
228 PF10363 DUF2435: Protein of u 57.4 45 0.00098 26.2 6.3 70 241-313 5-75 (92)
229 PF11701 UNC45-central: Myosin 57.1 31 0.00067 29.9 6.0 107 73-181 43-155 (157)
230 KOG0301 Phospholipase A2-activ 55.8 3E+02 0.0064 29.8 13.9 142 198-349 590-744 (745)
231 PF08167 RIX1: rRNA processing 54.9 53 0.0011 28.7 7.1 69 73-143 26-97 (165)
232 cd03568 VHS_STAM VHS domain fa 54.5 1.4E+02 0.003 25.5 10.2 68 284-352 41-110 (144)
233 cd03572 ENTH_epsin_related ENT 53.9 90 0.002 25.9 7.8 37 284-321 42-79 (122)
234 PF00790 VHS: VHS domain; Int 53.3 1.2E+02 0.0027 25.5 9.0 68 284-352 46-118 (140)
235 PF12530 DUF3730: Protein of u 53.2 1.9E+02 0.0041 26.8 15.4 138 116-267 2-151 (234)
236 KOG4653 Uncharacterized conser 52.8 1.9E+02 0.0042 32.1 11.9 208 128-347 741-959 (982)
237 PF11865 DUF3385: Domain of un 49.6 86 0.0019 27.3 7.5 140 116-264 12-154 (160)
238 KOG2025 Chromosome condensatio 49.3 83 0.0018 34.0 8.4 102 196-303 84-186 (892)
239 cd03561 VHS VHS domain family; 49.3 1.6E+02 0.0034 24.6 10.1 68 284-352 41-112 (133)
240 KOG2676 Uncharacterized conser 49.3 19 0.00041 35.5 3.5 64 92-155 376-441 (478)
241 COG5218 YCG1 Chromosome conden 48.6 3E+02 0.0065 29.4 12.0 114 70-193 89-204 (885)
242 PF14726 RTTN_N: Rotatin, an a 48.6 1.4E+02 0.003 23.8 8.2 63 285-348 32-96 (98)
243 PF10274 ParcG: Parkin co-regu 47.9 93 0.002 27.8 7.5 74 72-145 38-111 (183)
244 cd03569 VHS_Hrs_Vps27p VHS dom 46.8 1.8E+02 0.0039 24.7 10.0 68 284-352 45-114 (142)
245 KOG1566 Conserved protein Mo25 46.6 2.9E+02 0.0063 27.0 12.5 192 72-269 79-288 (342)
246 cd03567 VHS_GGA VHS domain fam 44.9 1.9E+02 0.0042 24.5 10.5 68 284-352 42-116 (139)
247 KOG2274 Predicted importin 9 [ 44.5 3.8E+02 0.0083 30.1 12.6 219 125-352 461-689 (1005)
248 KOG1832 HIV-1 Vpr-binding prot 43.8 1.1E+02 0.0024 34.1 8.3 131 127-267 675-824 (1516)
249 KOG1243 Protein kinase [Genera 43.7 1.4E+02 0.0029 32.3 9.0 187 195-398 328-521 (690)
250 cd00197 VHS_ENTH_ANTH VHS, ENT 43.2 1.7E+02 0.0038 23.4 8.5 71 71-141 36-113 (115)
251 KOG0915 Uncharacterized conser 43.1 5.9E+02 0.013 30.5 14.2 169 74-250 1000-1183(1702)
252 COG5113 UFD2 Ubiquitin fusion 41.7 26 0.00056 37.1 3.3 54 1-54 864-921 (929)
253 KOG1020 Sister chromatid cohes 41.7 5.6E+02 0.012 30.6 13.8 139 73-225 817-958 (1692)
254 KOG1991 Nuclear transport rece 41.6 3.9E+02 0.0084 30.3 12.2 135 113-250 409-558 (1010)
255 PF12830 Nipped-B_C: Sister ch 41.1 1.2E+02 0.0026 27.0 7.4 68 73-145 9-76 (187)
256 KOG2137 Protein kinase [Signal 40.7 2.7E+02 0.006 30.2 10.7 133 112-251 387-520 (700)
257 PF12460 MMS19_C: RNAPII trans 40.5 1.1E+02 0.0023 31.2 7.7 73 72-145 323-396 (415)
258 KOG1020 Sister chromatid cohes 40.2 3.3E+02 0.0072 32.4 11.8 138 197-352 816-960 (1692)
259 COG5116 RPN2 26S proteasome re 39.4 2.1E+02 0.0045 30.4 9.3 63 195-266 549-614 (926)
260 KOG2274 Predicted importin 9 [ 39.4 6E+02 0.013 28.6 14.8 150 73-227 531-689 (1005)
261 KOG2062 26S proteasome regulat 39.3 5.6E+02 0.012 28.2 16.9 63 239-311 554-619 (929)
262 COG5098 Chromosome condensatio 39.1 1.6E+02 0.0034 32.0 8.5 103 199-309 301-414 (1128)
263 PF11865 DUF3385: Domain of un 38.8 1.6E+02 0.0034 25.7 7.5 33 198-230 11-43 (160)
264 PF12530 DUF3730: Protein of u 38.3 3.3E+02 0.0071 25.2 16.4 137 74-226 2-150 (234)
265 KOG4464 Signaling protein RIC- 38.1 4.5E+02 0.0098 26.8 19.7 83 85-167 110-198 (532)
266 KOG2137 Protein kinase [Signal 37.5 1.3E+02 0.0027 32.6 7.7 137 156-300 389-527 (700)
267 smart00288 VHS Domain present 36.9 2.5E+02 0.0054 23.4 9.9 68 284-352 41-111 (133)
268 KOG1991 Nuclear transport rece 36.2 2.7E+02 0.0058 31.4 10.0 118 156-276 410-542 (1010)
269 PF07923 N1221: N1221-like pro 35.7 54 0.0012 31.7 4.5 52 115-166 61-126 (293)
270 COG4872 Predicted membrane pro 35.1 21 0.00046 34.7 1.5 15 12-26 5-21 (394)
271 PF07923 N1221: N1221-like pro 34.6 49 0.0011 32.0 4.0 54 195-249 58-126 (293)
272 PF01347 Vitellogenin_N: Lipop 34.0 3.1E+02 0.0067 29.3 10.4 108 127-251 448-570 (618)
273 PRK14015 pepN aminopeptidase N 33.9 4.9E+02 0.011 29.4 12.1 113 12-137 738-872 (875)
274 PF14663 RasGEF_N_2: Rapamycin 33.5 74 0.0016 26.0 4.3 39 115-154 9-47 (115)
275 PF07814 WAPL: Wings apart-lik 31.6 1.7E+02 0.0037 29.1 7.4 53 199-251 23-75 (361)
276 PF01347 Vitellogenin_N: Lipop 31.2 6.7E+02 0.014 26.7 17.5 209 71-307 346-586 (618)
277 PF08216 CTNNBL: Catenin-beta- 30.0 68 0.0015 26.0 3.4 36 216-251 64-99 (108)
278 PF08389 Xpo1: Exportin 1-like 29.8 1.7E+02 0.0037 24.2 6.2 62 199-262 84-148 (148)
279 PF11791 Aconitase_B_N: Aconit 29.1 1.3E+02 0.0028 26.0 5.1 27 198-225 95-121 (154)
280 PF03130 HEAT_PBS: PBS lyase H 28.2 37 0.0008 19.8 1.2 25 215-249 2-26 (27)
281 cd03572 ENTH_epsin_related ENT 28.1 3.4E+02 0.0073 22.6 7.3 53 72-124 38-92 (122)
282 cd03562 CID CID (CTD-Interacti 27.1 3.3E+02 0.0071 21.8 7.4 78 47-136 24-101 (114)
283 COG5116 RPN2 26S proteasome re 24.7 1.7E+02 0.0037 31.0 5.9 17 70-86 223-239 (926)
284 cd02685 MIT_C MIT_C; domain fo 24.2 54 0.0012 28.2 2.0 41 9-52 2-43 (148)
285 KOG1087 Cytosolic sorting prot 23.9 3.5E+02 0.0075 28.1 8.1 98 28-141 10-110 (470)
286 KOG4231 Intracellular membrane 23.8 1.3E+02 0.0028 31.4 4.8 65 119-184 333-398 (763)
287 cd03565 VHS_Tom1 VHS domain fa 23.7 4.5E+02 0.0098 22.2 12.3 101 27-143 9-115 (141)
288 KOG2038 CAATT-binding transcri 22.9 9.3E+02 0.02 26.8 11.0 114 197-321 304-422 (988)
289 KOG1791 Uncharacterized conser 22.1 9.2E+02 0.02 29.1 11.4 186 104-290 1429-1638(1758)
290 KOG0087 GTPase Rab11/YPT3, sma 22.1 55 0.0012 30.0 1.7 16 9-24 97-112 (222)
291 PLN03205 ATR interacting prote 21.9 2.8E+02 0.006 28.1 6.5 112 242-354 326-448 (652)
292 PF09145 Ubiq-assoc: Ubiquitin 21.8 47 0.001 22.2 0.9 15 5-19 24-39 (46)
293 KOG2199 Signal transducing ada 21.6 7.8E+02 0.017 24.9 9.5 88 46-142 28-117 (462)
294 PF08506 Cse1: Cse1; InterPro 20.8 7.8E+02 0.017 24.6 9.8 127 87-222 226-370 (370)
295 PF14663 RasGEF_N_2: Rapamycin 20.5 1.4E+02 0.003 24.4 3.7 39 198-237 9-47 (115)
296 PF06012 DUF908: Domain of Unk 20.3 2.6E+02 0.0057 27.4 6.3 75 129-204 237-323 (329)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=7.7e-30 Score=287.05 Aligned_cols=282 Identities=20% Similarity=0.234 Sum_probs=249.1
Q ss_pred hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC
Q 014196 70 DCVLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY 146 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 146 (429)
....+..+|+.|.++ +++.|..|+..|+.++++++++|..+++ .|+||.||.+|.+++..+|+.|+.+|.+|+.++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e- 89 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE- 89 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-
Confidence 466789999999977 7899999999999999999999999997 899999999999999999999999999999996
Q ss_pred chHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC---CCcccc-ccCCcHHHHHHhhhcCCcH--HHHHHHHH
Q 014196 147 TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA---NTHIPL-SSSEILPFLVGILESGSSV--ETKELCIG 220 (429)
Q Consensus 147 ~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i-~~~g~i~~Lv~lL~~~~~~--~~~~~A~~ 220 (429)
+|+..|+..|+||+|+.+|++++.+.|+.|+.+|++|+.+. .++..| ...|+||+|+.++++++.. .+++.++.
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~ 169 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTG 169 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHH
Confidence 69999999999999999999999999999999999999874 344444 4799999999999997421 25677889
Q ss_pred HHHHhccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhH
Q 014196 221 ALYNLSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKC 297 (429)
Q Consensus 221 aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~ 297 (429)
+|+|||.+++|+ ..++++|+||.|+.+|++.+ ..++.|+.+|.+++. +++++..+++.|+++ .||++|+...++..
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP-~LV~LL~sg~~~~V 248 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVK-QLLKLLGQGNEVSV 248 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH-HHHHHHccCCChHH
Confidence 999999999998 45789999999999998765 889999999988886 578999999988875 99999972345688
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCC---------HHHHHHHHHHHHHHHhc
Q 014196 298 QELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGS---------PLAQRRASKLLQWFKDE 353 (429)
Q Consensus 298 ~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~---------~~~k~~A~~lL~~l~~~ 353 (429)
|++|+++|.+||.+++++++.+++.|++|+|+.++...+ ...++.|.|.|.++.+.
T Consensus 249 RE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999998544 33589999999998764
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-30 Score=255.80 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=251.7
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.+|..|... ++..|.+|+++|.++|..+.+.-..++++|++|.++.+|.+++..+++.|+|||+|++.+....|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 47799999999855 68999999999999999999999999999999999999999999999999999999999998789
Q ss_pred HHHHhcCccchhhhhccCCCH-HHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 150 AIMVEAGILTKLPKNVDAVDE-STRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
..+.+.|++++|..++..... ...++++++|.|||...+..+.+. -..++|.|..++.+.|. ++..+|++||.+|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTD 266 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhc
Confidence 999999999999999987664 678899999999997765555554 46789999999999998 789999999999998
Q ss_pred CCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 228 VLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
++..+ ..++++|++|.|+++|..++ .++-.|+.+++|++. +++..+.+.+.|+++ .|..++..+.....++.|+++
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~-~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALP-VLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHH-HHHHHhccCcchhHHHHHHHH
Confidence 76655 88899999999999999876 788899999999987 566677788888875 899999744555678889999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
+.||++++.++.+.++++|++|.|+.+++.+.-+.|+.|+|++.++.-++
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999887543
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=1.6e-28 Score=276.47 Aligned_cols=279 Identities=17% Similarity=0.158 Sum_probs=243.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.||+.|.+++...|..|++.|++++..+++++..++++|+||+|+.+|.+++..+++.|+|+|.||+.+++.++.
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45799999999999999999999999999998889999999999999999999999999999999999999998643455
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc--------------------------------------cc
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH--------------------------------------IP 192 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~--------------------------------------~~ 192 (429)
.|.++|+||+|+.+|.+++.+.++.++++|.+|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 5558899999999999999999999999999996432211 00
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC--C
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV--T 268 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~--~ 268 (429)
....|+++.|+++|++++. ..++.|+++|.|++.. ++++..++..|+||+++.+|...+ ++++.++.+|.+++. .
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 1146899999999999987 7999999999999985 455788999999999999999875 899999999999995 4
Q ss_pred hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 269 STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 269 ~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
++.+..+++.|+++ .|+++|. +.+....+.|+.+|.+++.. ++.+..+..+|++++|++++++|+++.|+.|+|.|.
T Consensus 684 ~~q~~~~v~~GaV~-pL~~LL~-~~d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 684 ENRKVSYAAEDAIK-PLIKLAK-SSSIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALA 760 (2102)
T ss_pred HHHHHHHHHcCCHH-HHHHHHh-CCChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence 55667788878876 7999998 78889999999999999876 457788889999999999999999999999999877
Q ss_pred HHHhc
Q 014196 349 WFKDE 353 (429)
Q Consensus 349 ~l~~~ 353 (429)
.|...
T Consensus 761 ~L~~~ 765 (2102)
T PLN03200 761 QLLKH 765 (2102)
T ss_pred HHHhC
Confidence 66654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.5e-27 Score=220.91 Aligned_cols=315 Identities=21% Similarity=0.206 Sum_probs=266.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
.++..|+.....+..++|..++..|.+|+..+ .+|..++..|++.+|..+-++.|..+|.++..+|.|+.... +||+.
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~ 203 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRV 203 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhh
Confidence 34566777777777889999999999999874 79999999999999999888999999999999999999886 69999
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCC--cHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE--ILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
+|.+|++|.|+.++.+++...+..+..++.+++....++..+++.| .+|.||.++.++++ ++|-.|..+|.||+...
T Consensus 204 LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 204 LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDT 282 (550)
T ss_pred hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999998888888888776 99999999999998 89999999999999999
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
+....++++|.+|.++++|+++. +..-..++++.|++-+|-+-.-|+++|-+- .||++|...++++.|-+|+.+|++|
T Consensus 283 ~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~-pLVrlL~~~dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 283 EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLR-PLVRLLRAGDNEEIQCHAVSTLRNL 361 (550)
T ss_pred hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchh-HHHHHHhcCCchhhhhhHHHHHHHH
Confidence 99999999999999999998875 777788889999999999989999988775 7999998556777999999999999
Q ss_pred hhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCC-CCCCCCcc-ccccCCCCChhhhHHHHHH
Q 014196 309 AHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMG-PHSGPQTR-RVSIGSPVSPREAQEGKKM 386 (429)
Q Consensus 309 ~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~k~~ 386 (429)
+..++.++..+.+.|++|.|.+++.+++-.+|.+-...+..|.-....|.. ..++ .+. -+++....|++.+..+..|
T Consensus 362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~g-i~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSG-IIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcC-CcceeecccCccchhhcccHHHH
Confidence 998888999999999999999999999988888777766666643322211 0010 011 0123334477777777777
Q ss_pred HHHHH
Q 014196 387 MKNLV 391 (429)
Q Consensus 387 l~~~~ 391 (429)
|-++-
T Consensus 441 L~Nls 445 (550)
T KOG4224|consen 441 LINLS 445 (550)
T ss_pred HHhhh
Confidence 66553
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.3e-27 Score=222.72 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=244.7
Q ss_pred hhHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 69 DDCVLLQKSVKRLH-FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 69 ~~~~~l~~lv~~L~-~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+.+.+|++|+.+. ......+.+|+++|.+++......-..++++|++|.+++||.+++.++++.++|||+|++.+++.
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 56778999999995 44567888999999999987766667788999999999999999999999999999999999987
Q ss_pred hHHHHHhcCccchhhhhccCCC--HHHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 148 NKAIMVEAGILTKLPKNVDAVD--ESTRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
.|..+.+.|++++++.++.+.. ....+++.++|.||+.-.+..+.-. -..++|.|.+++.+.++ ++..+|++|+.+
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~-evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDP-EVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHH
Confidence 8999999999999999998765 4778899999999996543222221 24579999999999998 788999999999
Q ss_pred hccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHH
Q 014196 225 LSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 225 Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
|+..+..+ ..+++.|..+.|+++|.+++ .++.-++....|++.. +...+.+.++|.+. ++-.+|+ +.....+..|
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~-a~~~lLs-~~ke~irKEa 347 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK-AFRSLLS-SPKENIRKEA 347 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH-HHHHHhc-Chhhhhhhhh
Confidence 99987666 77899999999999999876 8889999999999884 55566778888775 8888988 7778899999
Q ss_pred HHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 302 AYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 302 ~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
++.+.++.+++.++.+.+++++.+|+|+.++....-++|+.|+|.+.+....
T Consensus 348 CWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 348 CWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred heeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999988777653
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-26 Score=215.59 Aligned_cols=277 Identities=20% Similarity=0.193 Sum_probs=246.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcC--cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELG--VIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.+++|.||..+++++.++|..+..+|.+++- +..+|+.+++.| .||.||++..++++.++..|..+|+||+.+. +.
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EY 284 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hh
Confidence 4568999999999999999999999999997 458999999998 9999999999999999999999999999997 68
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA- 227 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~- 227 (429)
...|+++|++|.++++|+++.....-..+..+.|++.++-|...|.+.|++.+||++|+.++.++++-+|..+|+||+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 9999999999999999998876666666778999999999999999999999999999999887799999999999998
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
...|+..+.+.|+||.+.+++.|.+ +++++..+++..|+.+++.+.++.+.|-++ .|+.+.. +.+.+.+.+|+.+|.
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~-iLIp~t~-s~s~Ev~gNaAaAL~ 442 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIP-ILIPWTG-SESEEVRGNAAAALI 442 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcc-eeecccC-ccchhhcccHHHHHH
Confidence 6678999999999999999999887 999999999999999999999999987775 9999988 788999999999999
Q ss_pred HHhhCCHHHHHHHHh------CCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 307 ILAHQSSEQRDKMAK------SGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 307 ~L~~~~~~~~~~i~~------~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++|..-+.+. .+++ .|+-..|..++.++..-.+..|.|.++.|-+
T Consensus 443 Nlss~v~~Ya-rviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 443 NLSSDVEHYA-RVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred hhhhhhHHHH-HHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9997533333 3333 3566677888888888889999997666664
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=224.27 Aligned_cols=321 Identities=17% Similarity=0.155 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh--chHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCc
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE--DVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~--~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.......+..+.+.++..+..+...+|.+... +|. -..+...|+||.+|.+|.. .++.+|..|+|+|.|+|.++.+
T Consensus 65 ~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~pp-i~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 65 ASNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPP-IDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCC-HHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchh
Confidence 33477888889999999999999999987542 233 3445555999999999975 5699999999999999999877
Q ss_pred hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 148 NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
....++++|++|.++.++.+++..+++.|+++|.|++-+. ..+..+.+.|++++|+.++...+.....+++.|+|.|||
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999776 566777799999999999998775457889999999999
Q ss_pred cCCCChhHH-HhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 227 AVLDNARPM-VSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 227 ~~~~n~~~i-v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.+..-...+ .-..++|.|..++.+.| .+...|+.+|..|+. .+|..+.+.+.|.++ .||++|. +.++..+..|+.
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~-~LV~lL~-~~~~~v~~PaLR 301 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP-RLVDLLG-HSSPKVVTPALR 301 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH-HHHHHHc-CCCcccccHHHh
Confidence 987544333 33688999999999877 899999999999996 678888888977775 9999999 889999999999
Q ss_pred HHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc--ccC--CCCCCCCCccccccCCCCChh
Q 014196 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKDER--QAK--MGPHSGPQTRRVSIGSPVSPR 378 (429)
Q Consensus 304 ~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~ 378 (429)
++.|+..++..+.+.++..|++|.|..++.. .....|+.|+|++.++.... |.. +..+-.|... .....+.-+
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li--~~l~~~ef~ 379 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLI--NLLQTAEFD 379 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHH--HHHhccchH
Confidence 9999999999999999999999999999995 56779999999999998642 221 1111111111 222344578
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 014196 379 EAQEGKKMMKNLVQQSLH 396 (429)
Q Consensus 379 ~~~~~k~~l~~~~~~~~~ 396 (429)
.+++|.-|+.++...+.+
T Consensus 380 ~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 380 IRKEAAWAISNLTSSGTP 397 (514)
T ss_pred HHHHHHHHHHhhcccCCH
Confidence 889999998877665443
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.87 E-value=2.2e-21 Score=181.28 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=247.3
Q ss_pred HHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc
Q 014196 45 NINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS 124 (429)
Q Consensus 45 ~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~ 124 (429)
++=..|...|+..|. .....-..+.+.+|.+++.|.+++.+++.+++++|.++|.+++.+|..+.++|++++|+.+|.
T Consensus 132 qfEAaWalTNiaSGt--t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ 209 (526)
T COG5064 132 QFEAAWALTNIASGT--TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL 209 (526)
T ss_pred HHHHHHHHhhhccCc--ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH
Confidence 334567777744332 111222346778999999999999999999999999999999999999999999999999998
Q ss_pred CCC--HHHHHHHHHHHHHhccCCCc--hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc-cccccCCcH
Q 014196 125 TEV--IGRRRAAIKALIQLANGTYT--NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH-IPLSSSEIL 199 (429)
Q Consensus 125 s~~--~~~~~~A~~aL~nLa~~~~~--nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i 199 (429)
+.- ......+.|.|.||+.+... +...| ..++|.|.+++.+.++++...|++++..|+..+.-+ ..+.+.|..
T Consensus 210 ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~ 287 (526)
T COG5064 210 SSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP 287 (526)
T ss_pred hccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence 764 47789999999999987422 23333 346889999999999999999999999999655333 344589999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHHHhcCcHHHHHHhccCC-cchHHHHHHHHHHhhC-ChhcHHHHh
Q 014196 200 PFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPMVSNGVVHTLLKLCSMK-ERLSEKSLATLGNLVV-TSTGKKAME 276 (429)
Q Consensus 200 ~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~-~~~~~~a~~~L~~La~-~~e~~~~i~ 276 (429)
+-||++|.+.+. .++..|++.+.|+....+.. ..++..|+++.+..+|+.+ +.+++.++.++.|+.. +.+..+++.
T Consensus 288 ~RLvElLs~~sa-~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavi 366 (526)
T COG5064 288 GRLVELLSHESA-KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVI 366 (526)
T ss_pred HHHHHHhcCccc-cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHH
Confidence 999999999987 78889999999999977766 6788999999999999876 4899999999999987 678888999
Q ss_pred cCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC---CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 277 DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ---SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 277 ~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~---~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+..-+| .|+++|. ...-..+..|++++.+...+ -|+..+.+++.|++.+|+.+|.....++-+-|...++++-+.
T Consensus 367 d~nliP-pLi~lls-~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 367 DANLIP-PLIHLLS-SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred hcccch-HHHHHHH-HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 988776 7999998 67778899999999998764 367888999999999999999877666666666666555543
Q ss_pred c
Q 014196 354 R 354 (429)
Q Consensus 354 ~ 354 (429)
+
T Consensus 445 G 445 (526)
T COG5064 445 G 445 (526)
T ss_pred h
Confidence 3
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.85 E-value=2.3e-19 Score=188.44 Aligned_cols=321 Identities=18% Similarity=0.135 Sum_probs=251.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.||+.|.+++.+....++..|++|+-.. +|+..|.+.|+|++|+.++.+++.+++..++.+|.||+++. .+|.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~ 366 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRS 366 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHH
Confidence 456889999999999999999999999999754 79999999999999999999999999999999999999998 6999
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.|++.|.||+|+.+|..++ .+..+..+|++||..++++..+...+++|.|++++.+++..++...++..+.|||.++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 9999999999999998543 45667889999999999999999999999999988776544566778899999999999
Q ss_pred ChhHHHhcCcHHHHHHhc-------------------------------------cCC--cchHHHHHHHHHHhhCChhc
Q 014196 231 NARPMVSNGVVHTLLKLC-------------------------------------SMK--ERLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL-------------------------------------~~~--~~~~~~a~~~L~~La~~~e~ 271 (429)
|...|++.|+++.|++.. ..+ +++.-.|+++|.||...+..
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD 524 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence 999999988888776531 111 26677899999999876656
Q ss_pred HHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHH
Q 014196 272 KKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRASKLLQ 348 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~~lL~ 348 (429)
...+.+..+++|.|.++|... ..+.....++..++.+|. ++..+..+.+.|+++.|++++... +++..-.......
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 667766556666999999721 234566778888888775 578899999999999999999874 4566555555554
Q ss_pred HHHhccccCCCCCCCCCccc----cccCCCCChhhhHHHHHHHHHHHHHHHHHh
Q 014196 349 WFKDERQAKMGPHSGPQTRR----VSIGSPVSPREAQEGKKMMKNLVQQSLHKN 398 (429)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~ 398 (429)
.|-.++++|. +-....+- +...++.....++-|..+|.-|.....+.+
T Consensus 604 ~ll~h~~tr~--~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 604 QLLFHEETRE--VLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHcChHHHH--HHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 4444343331 10001111 123355578888999999988888665554
No 10
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=5.6e-20 Score=189.16 Aligned_cols=326 Identities=21% Similarity=0.175 Sum_probs=249.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc--hH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT--NK 149 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~--nk 149 (429)
..+++.+.+|.+.++.+|..|+..|..++..+.+.|..+.+.|+|+.||.+|.+.+.++|.+|+++|.||.++... ||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999988765 89
Q ss_pred HHHHhcCccchhhhhccC-CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC-------C-c-----HHHH
Q 014196 150 AIMVEAGILTKLPKNVDA-VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG-------S-S-----VETK 215 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-------~-~-----~~~~ 215 (429)
-.|.+.++|+.++.++.. .+.++++..+.+||||++.|..+..|.. .+++.|..-+-.+ + + .++-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999985 6789999999999999999877777653 3456665544321 1 1 2466
Q ss_pred HHHHHHHHHhcc-CCCChhHHHhc-CcHHHHHHhcc------CCc-chHHHHHHHHHHhhCChh------cHHHHhcC--
Q 014196 216 ELCIGALYNLSA-VLDNARPMVSN-GVVHTLLKLCS------MKE-RLSEKSLATLGNLVVTST------GKKAMEDS-- 278 (429)
Q Consensus 216 ~~A~~aL~nLs~-~~~n~~~iv~~-G~v~~Lv~lL~------~~~-~~~~~a~~~L~~La~~~e------~~~~i~~~-- 278 (429)
.++.++|.|++. ..+.+++|.+. |.|..|+..+. +.+ ..+|+|+.+|.||..--+ .++...+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 789999999998 67778888885 99999998876 233 899999999999975211 00000000
Q ss_pred ------------------------------------C-C----ChHHHHH----hcccCCChhHHHHHHHHHHHHhhCC-
Q 014196 279 ------------------------------------P-L----VPESLIE----ILTWEEKPKCQELSAYILMILAHQS- 312 (429)
Q Consensus 279 ------------------------------------~-~----i~~~Lv~----~L~~~~s~~~~e~A~~~L~~L~~~~- 312 (429)
. | .-+.+|+ +|....++...|.++++|-+++.+.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0 0 0012222 2332456778899999999999853
Q ss_pred ---HHHHHHH-HhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccC--CCCCCCCCccc-ccc---CCCCChhhhHH
Q 014196 313 ---SEQRDKM-AKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAK--MGPHSGPQTRR-VSI---GSPVSPREAQE 382 (429)
Q Consensus 313 ---~~~~~~i-~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~--~~~~~~~~~~~-~~~---~~~~~~~~~~~ 382 (429)
...+..+ .++.+.|+|+++++.+++++.+.++.+|++|+.+..-+ ++.++.|.+-+ +.- ...-+||...-
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 3566666 66888999999999999999999999999999865322 33333333322 221 11226787777
Q ss_pred HHHHHHHHHHHHHHHh
Q 014196 383 GKKMMKNLVQQSLHKN 398 (429)
Q Consensus 383 ~k~~l~~~~~~~~~~~ 398 (429)
.=..|.+||+++++.+
T Consensus 632 vc~tl~niv~~~~~nA 647 (717)
T KOG1048|consen 632 VCHTLNNIVRKNVLNA 647 (717)
T ss_pred HHHhHHHHHHHhHHHH
Confidence 7788999998877653
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=1e-17 Score=176.06 Aligned_cols=259 Identities=20% Similarity=0.180 Sum_probs=213.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC
Q 014196 90 EMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD 169 (429)
Q Consensus 90 ~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~ 169 (429)
..+...|-+++. ++.+...+++.|+|+.||.+|++++.++...++.+|.+|+... +||..|.+.|+|++|++++.+.+
T Consensus 267 rv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCC
Confidence 356667888986 6689999999999999999999999999999999999999998 59999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 170 ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 170 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
.+.+..+..+|+|||.+++.+..+.+.|+||.|+.+|.+++ .+..|+.+|+|||..++++..+...+++|.++.++-
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~---~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN---FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc---hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 88899999999999999999999999999999999998754 356799999999999999999999999999999775
Q ss_pred CC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhc-------------------------------------c
Q 014196 250 MK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEIL-------------------------------------T 290 (429)
Q Consensus 250 ~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L-------------------------------------~ 290 (429)
.. + .+....++++.||+.++.+.+.|.+.+|+. .|++.. .
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~-~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~ 500 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQ-SLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVS 500 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHH-HHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 43 3 566667888889999999999998866654 555421 1
Q ss_pred cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHhcc
Q 014196 291 WEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 291 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~~lL~~l~~~~ 354 (429)
...++...-.++++|.||...+....+.+.+.+.+|-|..++..| .+...-.++.+++.+...+
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 012233345567777777655555666666789999999999887 3567777777777777544
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2e-16 Score=148.14 Aligned_cols=239 Identities=16% Similarity=0.183 Sum_probs=194.3
Q ss_pred cCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCC
Q 014196 113 LGVIQMLVSMVST--EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANT 189 (429)
Q Consensus 113 ~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~ 189 (429)
+-+...+|.+|.. ++.++-...+..+..-+..+|.||+.+++.|+++.+...|. .+...+.+++.++++.|...|+.
T Consensus 144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 3334444444432 23445555555555556666789999999999999986664 45566788888999999988887
Q ss_pred ccccc----------cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC-c----ch
Q 014196 190 HIPLS----------SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-E----RL 254 (429)
Q Consensus 190 ~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~----~~ 254 (429)
+..++ ..|++..|++.++.+-.+.....++.+|..|+..++.+..++|.|++..|+.++.|+ + ..
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l 303 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTL 303 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence 76665 467788999999876333667789999999999999999999999999999999985 2 46
Q ss_pred HHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh
Q 014196 255 SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333 (429)
Q Consensus 255 ~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~ 333 (429)
.+.++.+|..|+.++..+..|++.||.+ .++.++.++ ++|.+-+.++.++..||-+++++...+++.|+-...++.++
T Consensus 304 ~k~~lslLralAG~DsvKs~IV~~gg~~-~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 304 AKTCLSLLRALAGSDSVKSTIVEKGGLD-KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHhcChH-HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence 7889999999999999999999999986 788877644 78888899999999999999999999999999999999999
Q ss_pred cCCH--HHHHHHHHHHHHHHh
Q 014196 334 LGSP--LAQRRASKLLQWFKD 352 (429)
Q Consensus 334 ~~~~--~~k~~A~~lL~~l~~ 352 (429)
.... .+|++|+|+++++.-
T Consensus 383 ahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 383 AHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHH
Confidence 8754 578999999999985
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=9.2e-17 Score=171.72 Aligned_cols=260 Identities=20% Similarity=0.210 Sum_probs=214.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC------------CHHHHHHHHHHHHHhccCCCchHHHHH-hcCc
Q 014196 91 MAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE------------VIGRRRAAIKALIQLANGTYTNKAIMV-EAGI 157 (429)
Q Consensus 91 ~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~------------~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~ 157 (429)
.|+..|..++. ++++|..+.+.|++.++-.||.-+ ...++.+|..+|.||.++++.||..+. ..|.
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 56777777775 679999999999999998887532 146899999999999999988888887 5799
Q ss_pred cchhhhhccCCCHHHHHHHHHHHHHhhccCC--CccccccCCcHHHHHHhhh-cCCcHHHHHHHHHHHHHhcc-CCCChh
Q 014196 158 LTKLPKNVDAVDESTRHEFGELLLSLSSLAN--THIPLSSSEILPFLVGILE-SGSSVETKELCIGALYNLSA-VLDNAR 233 (429)
Q Consensus 158 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~A~~aL~nLs~-~~~n~~ 233 (429)
++.+|..|.+...++.+..|.+|.||+-..+ .+..+.+.|-+..|+...- .... ...+..+.|||||+. +.+|+.
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE-sTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE-STLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc-chHHHHHHHHhhhhhcccccch
Confidence 9999999988778888999999999997653 3566678899999988644 3332 345569999999998 478999
Q ss_pred HHHhc-CcHHHHHHhccCC----c-chHHHHHHHHHHhhC----ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 234 PMVSN-GVVHTLLKLCSMK----E-RLSEKSLATLGNLVV----TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 234 ~iv~~-G~v~~Lv~lL~~~----~-~~~~~a~~~L~~La~----~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.|... |++..|+.+|.-. . .++|.+-++|.|++. +++.|+...++..+ ..|++.|. +.+-.+..++++
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCL-q~LLQ~LK-S~SLTiVSNaCG 552 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCL-QTLLQHLK-SHSLTIVSNACG 552 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHH-HHHHHHhh-hcceEEeecchh
Confidence 98875 9999999999732 2 789999999998765 56677777776665 59999998 677788889999
Q ss_pred HHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 304 ~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
+||||...+++.++.+.+.|+|+.|..|+.+....+-+-++..|++|-..|
T Consensus 553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999987777777777777776544
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=6.4e-15 Score=138.17 Aligned_cols=279 Identities=14% Similarity=0.172 Sum_probs=222.3
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCC-
Q 014196 71 CVLLQKSVKRLH--FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTY- 146 (429)
Q Consensus 71 ~~~l~~lv~~L~--~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~- 146 (429)
..+..-+|+.|. ..+.+........++.-+-.++.||+.+.+.|+.+.+...|... ...+...+.|+++.|..+++
T Consensus 144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 344566667665 33566777788888888878889999999999999999777653 34577778999999988764
Q ss_pred --------chHHHHHhcCccchhhhhccCC-CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHH---H
Q 014196 147 --------TNKAIMVEAGILTKLPKNVDAV-DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVE---T 214 (429)
Q Consensus 147 --------~nk~~iv~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~---~ 214 (429)
.....|++.|++..|+..++-. ++.....+..+|..|+..++.+..|.+.|++..|++++.+.+..+ +
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l 303 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTL 303 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence 2456788888888888887643 355666788899999999999999999999999999998743323 4
Q ss_pred HHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC---cchHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcc
Q 014196 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---ERLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 215 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
.+.++..|..|+..+.++..+|+.|+.+.++.++... +.+.+.+++++.-||- .|+....+++.|+.. ..|+.|.
T Consensus 304 ~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~-~avqAmk 382 (461)
T KOG4199|consen 304 AKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAAD-LAVQAMK 382 (461)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHH-HHHHHHH
Confidence 4678999999999999999999999999999987532 3788888999998886 799988999988775 8899997
Q ss_pred cCC-ChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 291 WEE-KPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 291 ~~~-s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
.++ ....|.+|++.+.||..++.+++..++..| +..|+.......+.....|-..|+-|+
T Consensus 383 ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 383 AHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 543 346789999999999999999999999988 678887777666666666666676665
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=8.4e-14 Score=130.85 Aligned_cols=192 Identities=22% Similarity=0.208 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
+...++.|+..|+. .++..+..|..++.+.+. .+.++..+.+.|+++.+..+|..+++.+++.|+++|.|++.+. +|
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-EN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hh
Confidence 46678999999995 489999999999999886 4589999999999999999999999999999999999999997 58
Q ss_pred HHHHHhcCccchhhhhccC--CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDA--VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
+..|-. .++.+...+.+ .+.+.+..+..+|.+|+..++++..+. +.+|.++.+|..|+. .+|..++++|.|||
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~-~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSE-KTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCCh-HHHHHHHHHHHHhc
Confidence 776643 46666664433 346677777889999998888877775 479999999999998 79999999999999
Q ss_pred cCCCChhHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhhCC
Q 014196 227 AVLDNARPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 227 ~~~~n~~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~~ 268 (429)
.++.+...++.+++++.++.++... + ++...++....|+..+
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999865 2 8888999999999764
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.57 E-value=3.5e-13 Score=139.42 Aligned_cols=281 Identities=17% Similarity=0.121 Sum_probs=210.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH--HHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCC-
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK--IKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTY- 146 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~- 146 (429)
.++|+.||..|.+.+.+++..|+.+||+|...+.. |+-.|.++|+|+.|+++|+. .|.++++....+|+||+..|.
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 45789999999999999999999999999865544 99999999999999999987 788999999999999875531
Q ss_pred -----------------------------------------------------chHHHHHh-cCccchhhhhccC-----
Q 014196 147 -----------------------------------------------------TNKAIMVE-AGILTKLPKNVDA----- 167 (429)
Q Consensus 147 -----------------------------------------------------~nk~~iv~-~G~i~~Lv~lL~~----- 167 (429)
+.|+.+.+ .|.|+.|+..++.
T Consensus 354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 12333332 4677777777652
Q ss_pred -CCHHHHHHHHHHHHHhhccCC------Cc--------------------------cc---------cc-----------
Q 014196 168 -VDESTRHEFGELLLSLSSLAN------TH--------------------------IP---------LS----------- 194 (429)
Q Consensus 168 -~~~~~~~~aa~~L~~Ls~~~~------~~--------------------------~~---------i~----------- 194 (429)
.+....++++.+|.||+..-+ .. .. |-
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 235567888899999984211 00 00 00
Q ss_pred --cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCC-----hhHH-HhcCcHHHHHHhccCCc-chHHHHHHHHHHh
Q 014196 195 --SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDN-----ARPM-VSNGVVHTLLKLCSMKE-RLSEKSLATLGNL 265 (429)
Q Consensus 195 --~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n-----~~~i-v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~L 265 (429)
...+|..=..+|.......+.+.++++|-||+...-- +..+ ...-+.|+|+++|...+ .+++.++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 0111222122333322235778899999999975432 2333 45678899999998664 8999999999999
Q ss_pred hCChhcHHHHhcCCCChHHHHHhcccCCC-----hhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-CCHHH
Q 014196 266 VVTSTGKKAMEDSPLVPESLIEILTWEEK-----PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-GSPLA 339 (429)
Q Consensus 266 a~~~e~~~~i~~~~~i~~~Lv~~L~~~~s-----~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~ 339 (429)
+.+..++..|.. ++++ -||+.|...+. .+..-.++.+|++|...+..+...+.+.++++.|+.+..+ .+++.
T Consensus 594 s~d~rnk~ligk-~a~~-~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 594 SRDIRNKELIGK-YAIP-DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred ccCchhhhhhhc-chHH-HHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999999999984 5664 89999973222 4566778899999998888999999999999999999987 47889
Q ss_pred HHHHHHHHHHHHhc
Q 014196 340 QRRASKLLQWFKDE 353 (429)
Q Consensus 340 k~~A~~lL~~l~~~ 353 (429)
-+.|+.+|..|...
T Consensus 672 ~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 672 FKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887754
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=2.1e-12 Score=121.45 Aligned_cols=194 Identities=18% Similarity=0.139 Sum_probs=164.0
Q ss_pred HHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC
Q 014196 110 MAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN 188 (429)
Q Consensus 110 i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 188 (429)
+.+.+-++.|+.+|+. .||.+++.++.++.|.+..+ .++..|.+.|+++.+..++..+++..++.|..+|.|++...+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 3566778999999996 68999999999999999987 699999999999999999999999999999999999999988
Q ss_pred CccccccCCcHHHHHHhhhcC--CcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHh
Q 014196 189 THIPLSSSEILPFLVGILESG--SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNL 265 (429)
Q Consensus 189 ~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~L 265 (429)
++..|.. .++.+.+.+.+. ++ .++..++++|.||+..++.+..+. +.+|.++.+|..++ .++..++.+|.||
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns-~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNS-EVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCC-HHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 8887743 577777765543 44 688899999999998877766664 57999999998765 8899999999999
Q ss_pred hCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 266 VVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 266 a~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
+.++.....+..+++.. .++.++..+.+...-..++....+|..
T Consensus 162 S~np~~~~~Ll~~q~~~-~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLS-SFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred ccCHHHHHHHHhccchh-HHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999988888887664 899998744556667777777778864
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.45 E-value=2e-11 Score=126.69 Aligned_cols=278 Identities=19% Similarity=0.223 Sum_probs=213.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.....+.+...|.++++.+|.-++..|++++.++......+.+.+.++.++.+|.++|.++.+.|+.+|.+|+.+. .+-
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhH
Confidence 4556778888999999999999999999999888777788889999999999999999999999999999999986 466
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.+.++.|..++...+...|..+..++.+++... +....+.+.|.++.+++.|.++|. -++.+|+..|..|+..
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDi-Lvqlnalell~~La~~ 232 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDI-LVQLNALELLSELAET 232 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccH-HHHHHHHHHHHHHHcC
Confidence 67888888999999998767777777888888887554 444555678999999999999776 6899999999999999
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc--c-----hHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE--R-----LSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~--~-----~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
+.+...+.+.|+++.|+.++.+.. . ..-..+...++++.. .....+...+.+...|.+++. ..++..+..|
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~-s~d~~~~~~A 310 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLE-SQDPTIREVA 310 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhC-CCChhHHHHH
Confidence 999999999999999999997541 2 223333555666663 111222222333334555665 6788889999
Q ss_pred HHHHHHHhhCCHHHHHHH-HhCC-c----hHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 302 AYILMILAHQSSEQRDKM-AKSG-I----VHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 302 ~~~L~~L~~~~~~~~~~i-~~~G-~----v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
..+++.+|.. .+....+ ...| . +........+++...|.++...|..+-.
T Consensus 311 ~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 311 FDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 9999999965 4555555 4433 3 3333444455677888888887777743
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=1.7e-11 Score=132.23 Aligned_cols=277 Identities=19% Similarity=0.148 Sum_probs=209.1
Q ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHH---H-------hhcCCC-------HHHH-
Q 014196 73 LLQKSVKRLHFG---SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLV---S-------MVSTEV-------IGRR- 131 (429)
Q Consensus 73 ~l~~lv~~L~~~---~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv---~-------lL~s~~-------~~~~- 131 (429)
-++.||+.|+.. +.+.++.|-.+|.++....++.+..=.+.-+++.|= . .|...+ .+-+
T Consensus 236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~l 315 (2195)
T KOG2122|consen 236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQL 315 (2195)
T ss_pred chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhh
Confidence 468899999865 346667788889998764443332222222233322 1 222211 1233
Q ss_pred HHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC------------HHHHHHHHHHHHHhhccC-CCccccc-cCC
Q 014196 132 RAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD------------ESTRHEFGELLLSLSSLA-NTHIPLS-SSE 197 (429)
Q Consensus 132 ~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~------------~~~~~~aa~~L~~Ls~~~-~~~~~i~-~~g 197 (429)
..|+.+|..++++. +.|..+-+-|++..+..||+... ..+|+++..+|-||.+-+ .||..+. ..|
T Consensus 316 caA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 37889999999996 69999999999999988875311 457888999999999887 4666665 689
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCC-hhHHHhcCcHHHHHHhc-cCC-cchHHHHHHHHHHhhC-ChhcH
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSAV-LDN-ARPMVSNGVVHTLLKLC-SMK-ERLSEKSLATLGNLVV-TSTGK 272 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n-~~~iv~~G~v~~Lv~lL-~~~-~~~~~~a~~~L~~La~-~~e~~ 272 (429)
++..+|..|.+... ++.+-.+.+|.||+-. +.| +..+.+.|-|..|+.+- ... +...+..+.+|+||+. +.+++
T Consensus 395 fMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred HHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 99999999998775 6777788999999963 445 46677789999998864 433 3678889999999998 68999
Q ss_pred HHHhcCCCChHHHHHhcccC---CChhHHHHHHHHHHHHhh---CCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWE---EKPKCQELSAYILMILAH---QSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKL 346 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~---~s~~~~e~A~~~L~~L~~---~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~l 346 (429)
..|+...|+...||.+|.-. .....-|.|-+||.|+.. ..+.+|+.+.+.+.+..|+..|++.+--+..+|+-.
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 99999888888999999721 234567899999999886 357899999999999999999999887777777777
Q ss_pred HHHHH
Q 014196 347 LQWFK 351 (429)
Q Consensus 347 L~~l~ 351 (429)
|.+|.
T Consensus 554 LWNLS 558 (2195)
T KOG2122|consen 554 LWNLS 558 (2195)
T ss_pred hhhhh
Confidence 77766
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.34 E-value=9.7e-11 Score=121.58 Aligned_cols=307 Identities=17% Similarity=0.158 Sum_probs=220.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcC
Q 014196 77 SVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAG 156 (429)
Q Consensus 77 lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G 156 (429)
+...|...+.+.-..++..|..+.... ..... ..+..+.|...|.++++.+++.+++.|.+++.+++.....+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 666777766666666777788776533 12222 456688999999999999999999999999988743355667899
Q ss_pred ccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHH
Q 014196 157 ILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPM 235 (429)
Q Consensus 157 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~i 235 (429)
.++.++.++..++.++...|+.+|..|+.....-..+.+.+.++.|..++...+. .+|..+..++.+++..++.. ..+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSD-IVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999776665566677789999999988665 57888999999999876655 667
Q ss_pred HhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHH------HH
Q 014196 236 VSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYIL------MI 307 (429)
Q Consensus 236 v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L------~~ 307 (429)
.+.|.++.++..|.+.| -++..++.+|..|+.++.|.+.+.+.|.+ +.|++++... .++ +-.+..+. .+
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~-~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIF-DKLSNLLQDSEEDP--RLSSLLLPGRMKFFGN 275 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHH-HHHHHHHhccccCC--cccchhhhhHHHHHHH
Confidence 77899999999999876 67889999999999999999999997665 5899998732 222 22222222 23
Q ss_pred HhhCCHHHHHHHHh--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCC--CCCCCcccc---c--cCCCCChh
Q 014196 308 LAHQSSEQRDKMAK--SGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGP--HSGPQTRRV---S--IGSPVSPR 378 (429)
Q Consensus 308 L~~~~~~~~~~i~~--~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~--~~~~~~~~~---~--~~~~~~~~ 378 (429)
++..++.. +.. ...+..|.+++.++++..+..|-..+..++.+.+.+..- +.++.+..+ + ....+..|
T Consensus 276 la~~~~~~---v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 276 LARVSPQE---VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHhcChHH---HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 33322221 111 123334445555667777788888999998765533111 112223221 1 22344678
Q ss_pred hhHHHHHHHHHHHHH
Q 014196 379 EAQEGKKMMKNLVQQ 393 (429)
Q Consensus 379 ~~~~~k~~l~~~~~~ 393 (429)
.+-++-.++..|+..
T Consensus 353 lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 353 LKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888888653
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.6e-11 Score=115.54 Aligned_cols=315 Identities=17% Similarity=0.149 Sum_probs=220.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..+.-||+.|...+.+.-......|..|+-.+ +|+..+.+.|.|+.|+.+....+++++...+..|.|++++. .++..
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~K 381 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPK 381 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHH
Confidence 45677888888777777777788888888655 79999999999999999999999999999999999999998 69999
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHH-HHhccCCC
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGAL-YNLSAVLD 230 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL-~nLs~~~~ 230 (429)
++..|.+|.|+.++.+.. -...|...|+.+|.+++.+..++...+|+.|.+.+-++...++-. ++-++ .|||.+..
T Consensus 382 Mv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl-~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDL-ALIALCINLCLNKR 458 (791)
T ss_pred HhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecH-HHHHHHHHHHhccc
Confidence 999999999999996533 234577899999999999999999999999999887765434443 33444 58999888
Q ss_pred ChhHHHhcCcHHHHHHh------------c-------------------------c-CC-cchHHHHHHHHHHhhCChhc
Q 014196 231 NARPMVSNGVVHTLLKL------------C-------------------------S-MK-ERLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~l------------L-------------------------~-~~-~~~~~~a~~~L~~La~~~e~ 271 (429)
|.+.+++..++..|++. + + +. +.+.-.|+++|+||.-++-.
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 88888887666655432 1 1 11 15566889999999887666
Q ss_pred HHHHhcCCCChHHHHHhcccCCC--hhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHH-HH
Q 014196 272 KKAMEDSPLVPESLIEILTWEEK--PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRAS-KL 346 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~~s--~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~-~l 346 (429)
-..|.+...++|.+-..|. .+- ...+-..+-+++.++ .+......+..+|+|+.|+++++.. +++..-.-. -.
T Consensus 539 w~~ilq~~~LvPw~k~~L~-pga~eddLvL~~vi~~GT~a-~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQ-PGADEDDLVLQIVIACGTMA-RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred HHHHHhhccccHHHHHhhc-CCccchhhhhHHHHHhhhhh-hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 6777666666668888776 321 122333333444433 3456777777899999999999874 333222222 24
Q ss_pred HHHHHhccccC-CCCCCCCCccc---cccCCCCChhhhHHHHHHHHHHHHHHHH
Q 014196 347 LQWFKDERQAK-MGPHSGPQTRR---VSIGSPVSPREAQEGKKMMKNLVQQSLH 396 (429)
Q Consensus 347 L~~l~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 396 (429)
++.+++.--.+ +...+ ... +...++-.++.++-|..+|.-|-...-+
T Consensus 617 ~Q~l~He~tr~~miket---~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 617 LQFLKHELTRRLMIKET---ALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred HHHHHHHHHHHHHHhhc---cchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 56666521111 11100 111 2233444666777777777666654433
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.30 E-value=2e-11 Score=101.17 Aligned_cols=118 Identities=27% Similarity=0.294 Sum_probs=105.8
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC
Q 014196 109 LMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN 188 (429)
Q Consensus 109 ~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 188 (429)
.+++.|+++.|+.+|.+++..+++.++++|.+++.++++++..+++.|+++.++.++...+...+..++++|.+|+....
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999966788899999999999999999889999999999999997663
Q ss_pred -CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 189 -THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 189 -~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
....+...|+++.|++++..++. .+++.++.+|.||+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence 34455678999999999999876 799999999999873
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.9e-10 Score=111.50 Aligned_cols=281 Identities=17% Similarity=0.140 Sum_probs=197.9
Q ss_pred HHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC
Q 014196 49 QEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFG---SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST 125 (429)
Q Consensus 49 ~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~---~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s 125 (429)
-|........-.++..|..+.-...+.++-+.|+.- ....-..|...|.++|. +...-..++..+.+..||..|..
T Consensus 237 ~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr 315 (791)
T KOG1222|consen 237 FWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDR 315 (791)
T ss_pred HHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcc
Confidence 455443222223334444444445566666666542 11222346677788885 55667788888999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHh
Q 014196 126 EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGI 205 (429)
Q Consensus 126 ~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 205 (429)
.+.++.......|..|+..+ +||..+.+.|.|++|++++....++.+.....+|+|||.+..+++.+...|.+|.|+.+
T Consensus 316 ~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~l 394 (791)
T KOG1222|consen 316 SNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASL 394 (791)
T ss_pred cchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHH
Confidence 99999999999999999998 59999999999999999999888999988889999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChH
Q 014196 206 LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPE 283 (429)
Q Consensus 206 L~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~ 283 (429)
|.++.. +..|+..||.+|.++..+..+.-..+|+.+...+-.+ + ++-..-++...|||.+..+.+.+++-.|+-
T Consensus 395 l~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~- 470 (791)
T KOG1222|consen 395 LDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLD- 470 (791)
T ss_pred hCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchH-
Confidence 988765 3458999999999999999999999999998855433 3 554455555568887655544444422221
Q ss_pred HHH------------Hhc-------------------------ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchH
Q 014196 284 SLI------------EIL-------------------------TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVH 326 (429)
Q Consensus 284 ~Lv------------~~L-------------------------~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~ 326 (429)
.|+ +++ ..+.++.---.|.++|.++.-.+-...+.+.+...||
T Consensus 471 ~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvP 550 (791)
T KOG1222|consen 471 LLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVP 550 (791)
T ss_pred HHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccH
Confidence 222 222 1111122223455555555544444555666678888
Q ss_pred HHHHHhhcC
Q 014196 327 VSLQLALLG 335 (429)
Q Consensus 327 ~L~~ll~~~ 335 (429)
-+-..++.|
T Consensus 551 w~k~~L~pg 559 (791)
T KOG1222|consen 551 WMKTQLQPG 559 (791)
T ss_pred HHHHhhcCC
Confidence 888877765
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.27 E-value=5.8e-11 Score=98.36 Aligned_cols=114 Identities=26% Similarity=0.233 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.+++.|.+++++.+..++..|.+++..++..+..+.+.|++|.|+.+|.++++.++..|+++|.||+.+.+..+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34688999999999999999999999999998889999999999999999999999999999999999999998755677
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhh
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLS 184 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 184 (429)
.+++.|+++.|+.+++..+.+.++.++.+|.+|+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7889999999999999888999999999999987
No 25
>PRK09687 putative lyase; Provisional
Probab=99.22 E-value=9.5e-10 Score=105.49 Aligned_cols=263 Identities=11% Similarity=0.056 Sum_probs=186.9
Q ss_pred HHHHHHhccc-cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHH
Q 014196 17 IRQFIQSKSA-RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKE 95 (429)
Q Consensus 17 Ie~W~~~g~~-~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~ 95 (429)
+|-.|.+|.+ .|..+|...---+|...|.......... + +...++.+...+.++++..+..|+..
T Consensus 12 ~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~---~-----------~~~~~~~l~~ll~~~d~~vR~~A~~a 77 (280)
T PRK09687 12 KEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLR---G-----------GQDVFRLAIELCSSKNPIERDIGADI 77 (280)
T ss_pred HHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhc---C-----------cchHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777766 6676665544457777766666555433 1 13346677777788899999999999
Q ss_pred HHHHhhhchHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHH
Q 014196 96 IEKLAKEDVKIKKLMAELGVIQMLVSM-VSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRH 174 (429)
Q Consensus 96 L~~La~~~~~~r~~i~~~G~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~ 174 (429)
|..+..... . ..-+++.|..+ ++++++.++..|+.+|+++.... .+. ...+++.+...+...+..+|.
T Consensus 78 Lg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~----~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 78 LSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLY----SPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred HHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-ccc----chHHHHHHHHHhhCCCHHHHH
Confidence 999864321 1 12347788877 67789999999999999986543 111 111344455666677788888
Q ss_pred HHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-c
Q 014196 175 EFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-R 253 (429)
Q Consensus 175 ~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~ 253 (429)
.++.+|..+. +..+++.|+.+|.+.+. .++..|+.+|.++.... ..+++.|+.+|.|.+ .
T Consensus 147 ~a~~aLg~~~----------~~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~ 207 (280)
T PRK09687 147 AVAFALSVIN----------DEAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEE 207 (280)
T ss_pred HHHHHHhccC----------CHHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChH
Confidence 8888885443 44579999999998887 79999999999883222 256788999998876 8
Q ss_pred hHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh
Q 014196 254 LSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333 (429)
Q Consensus 254 ~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~ 333 (429)
++..|+..|..+-. + . +++.|++.|. ++. .+..++.+|..+.. + -++|.|..++.
T Consensus 208 VR~~A~~aLg~~~~-~---------~-av~~Li~~L~-~~~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~ 262 (280)
T PRK09687 208 IRIEAIIGLALRKD-K---------R-VLSVLIKELK-KGT--VGDLIIEAAGELGD--K---------TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHHccCC-h---------h-HHHHHHHHHc-CCc--hHHHHHHHHHhcCC--H---------hHHHHHHHHHh
Confidence 88888888877422 1 2 3458999997 444 45667777776543 2 36899999997
Q ss_pred -cCCHHHHHHHHHHHH
Q 014196 334 -LGSPLAQRRASKLLQ 348 (429)
Q Consensus 334 -~~~~~~k~~A~~lL~ 348 (429)
..+.+++.+|.+.|.
T Consensus 263 ~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 263 KFDDNEIITKAIDKLK 278 (280)
T ss_pred hCCChhHHHHHHHHHh
Confidence 678999999998875
No 26
>PRK09687 putative lyase; Provisional
Probab=99.19 E-value=8.9e-10 Score=105.69 Aligned_cols=253 Identities=10% Similarity=0.025 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
+..|+..|.+.+..++..|++.|..+-. ..+++.+..++.++|+.+|..|+++|..|..... .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~----- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C----- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----
Confidence 6788999999999999999999987752 2347788899999999999999999999865431 1
Q ss_pred hcCccchhhhh-ccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh
Q 014196 154 EAGILTKLPKN-VDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA 232 (429)
Q Consensus 154 ~~G~i~~Lv~l-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~ 232 (429)
...+++.|..+ ++..+..+|..++.+|.++....... ...+++.|...+.+.+. .++..++.+|.++.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~-~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKST-NVRFAVAFALSVIN------ 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCH-HHHHHHHHHHhccC------
Confidence 22345666665 56777889999999999986432111 22356677777777776 79999999996553
Q ss_pred hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC
Q 014196 233 RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ 311 (429)
Q Consensus 233 ~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~ 311 (429)
...+++.|+.+|.|++ .++..|+..|..+.... ..+.+.|+..|. +.+..++..|+.+|..+-
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~-- 220 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQ-DKNEEIRIEAIIGLALRK-- 220 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhc-CCChHHHHHHHHHHHccC--
Confidence 2347899999999886 88999999999873211 123347899998 788999999999887642
Q ss_pred CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccccCCCCChhhhHHHHHHHHH
Q 014196 312 SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSIGSPVSPREAQEGKKMMKN 389 (429)
Q Consensus 312 ~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~ 389 (429)
++ -++|.|+..+.++. .+..|+..|+.+++.. +.|.+.+. .....+.+.+.++..++++
T Consensus 221 ~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~-------a~p~L~~l-~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 221 DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGDKT-------LLPVLDTL-LYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh-------HHHHHHHH-HhhCCChhHHHHHHHHHhc
Confidence 22 46899999998876 5667888888887632 12222222 1123366777888877765
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.11 E-value=5.1e-09 Score=101.77 Aligned_cols=280 Identities=11% Similarity=0.080 Sum_probs=203.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC----CC---HHHHHHHHHHHHHhcc
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST----EV---IGRRRAAIKALIQLAN 143 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----~~---~~~~~~A~~aL~nLa~ 143 (429)
.+.+..|++...+++.++-.+..++|.++|..+.++|..+.+.||-..+++.|+. ++ .+....+...|.|...
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4556677777777778888899999999999999999999999998888888765 23 2445566788999999
Q ss_pred CCCchHHHHHhcCccchhhhhccCCC--HHHHHHHHHHHHHhhccC-C-CccccccCCcHHHHHHhhhcCCcHHHHHHHH
Q 014196 144 GTYTNKAIMVEAGILTKLPKNVDAVD--ESTRHEFGELLLSLSSLA-N-THIPLSSSEILPFLVGILESGSSVETKELCI 219 (429)
Q Consensus 144 ~~~~nk~~iv~~G~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~-~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~ 219 (429)
++++.+..+++.|+++.|..++.-.- .+..+......++|.+.. + ..+...+....-.|++++.+...+...+-++
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 88777999999999999988875322 233333433444443322 2 2344456777888999988754445677788
Q ss_pred HHHHHhccCCCChhHHHhcCcHHHHHHhccCC-c--------chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcc
Q 014196 220 GALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-E--------RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~--------~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
..|...+.++.-+-.++++|.+..+++++... + .....++....-|...+|.-+..-..|.+...+++.+.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 99999999999999999999999999998752 1 12223333333334455655556554545556666766
Q ss_pred cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-----CCHHHHHHHHHHHHHHHh
Q 014196 291 WEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-----GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 291 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-----~~~~~k~~A~~lL~~l~~ 352 (429)
+.+...+..++-+++|+++.+ .++.-+++.|.+..|++++-. |+.+.+..+...|++|-=
T Consensus 326 -S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 326 -SDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred -CCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 566677788888899998764 567778999999999998854 466777777789998874
No 28
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.03 E-value=3e-08 Score=99.40 Aligned_cols=277 Identities=15% Similarity=0.042 Sum_probs=195.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
...++..|..++...+..|+..|..+...++.+.......-.+..|...|.+. +...+.-|+.+|..|...+ ..|..+
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f 181 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAF 181 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHH
Confidence 56677788888888999999999988765543211111111334556666654 4677888889999998887 589999
Q ss_pred HhcCccchhhhhccCC--CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC-
Q 014196 153 VEAGILTKLPKNVDAV--DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL- 229 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~- 229 (429)
++.++++.|+.+|+.. ....+.++.-++|-||..++........+.|+.|+++++....+++.+-++.+|.||...+
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999753 3567788889999999887755566678999999999998877788899999999998743
Q ss_pred ------CChhHHHhcCcHHHHHHhccCC--c-chHHH---HHHHH----HHhhCCh------------------------
Q 014196 230 ------DNARPMVSNGVVHTLLKLCSMK--E-RLSEK---SLATL----GNLVVTS------------------------ 269 (429)
Q Consensus 230 ------~n~~~iv~~G~v~~Lv~lL~~~--~-~~~~~---a~~~L----~~La~~~------------------------ 269 (429)
.....|++.|..+.+-.+.... | ++.+. .-..| ..++..+
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 2335677777655444443321 2 22221 11111 1222212
Q ss_pred hcHHHHhcC-CCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 270 TGKKAMEDS-PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 270 e~~~~i~~~-~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
|+...+.+. ..++..|+++|..+.++....-|+.=++.++.+-|..+..+-+-|+=..+.+++.+.++.++..|...++
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 244444332 3345678888864456666667777788888877888888888999999999999999999999998877
Q ss_pred HHH
Q 014196 349 WFK 351 (429)
Q Consensus 349 ~l~ 351 (429)
.+-
T Consensus 422 klm 424 (429)
T cd00256 422 KLM 424 (429)
T ss_pred HHH
Confidence 653
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.93 E-value=1.5e-08 Score=99.05 Aligned_cols=249 Identities=18% Similarity=0.134 Sum_probs=163.5
Q ss_pred HHHHHHHhhhchHHHHHHHhc---CcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCchHHHHHh------cCccchh
Q 014196 93 AKEIEKLAKEDVKIKKLMAEL---GVIQMLVSMVST--EVIGRRRAAIKALIQLANGTYTNKAIMVE------AGILTKL 161 (429)
Q Consensus 93 a~~L~~La~~~~~~r~~i~~~---G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~nk~~iv~------~G~i~~L 161 (429)
+..++.+-+..++.|..+.+. +....++.+|.. .+.++.++.+..+..+..+++.....+.+ .....++
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f 110 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF 110 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence 344445544444455445542 345666777754 57899999999999988887544444443 1256778
Q ss_pred hhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCc---HHHHHHHHHHHHHhccCCCChhHHHhc
Q 014196 162 PKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS---VETKELCIGALYNLSAVLDNARPMVSN 238 (429)
Q Consensus 162 v~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~~ 238 (429)
++++...+...+..++.+|..|....+....-...+.++.+++.|.+... .+.+..|+.+|.+|...++.+..+.+.
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 88888888888888888999888665444433234678889888876321 145578999999999999999999999
Q ss_pred CcHHHHHHhc------cCC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 239 GVVHTLLKLC------SMK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 239 G~v~~Lv~lL------~~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
|+++.++.+| ... + .++-+++-+++.|+-+++....+.+.+ +++.|++++.....+++..-++++|.|+..
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 9999999999 222 2 778889999999999999999999887 667999999866788899999999999998
Q ss_pred CCH-HHHHHHHhCCchHHHHHHhhc--CCHHHHHH
Q 014196 311 QSS-EQRDKMAKSGIVHVSLQLALL--GSPLAQRR 342 (429)
Q Consensus 311 ~~~-~~~~~i~~~G~v~~L~~ll~~--~~~~~k~~ 342 (429)
.++ .....|+..|+++.+-.+... ++++..+-
T Consensus 270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 654 388889988865555444443 25555443
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.89 E-value=5.4e-10 Score=84.70 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=42.3
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHh-ccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQS-KSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~-g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|+.. -.|+|||| |++||.. +.. .|++++...+|+||..||+.|++|+.+|
T Consensus 14 M~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 14 MRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAEN 71 (73)
T ss_dssp -SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred hhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHc
Confidence 5567665 45699999 9999998 443 9999999999999999999999999877
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.86 E-value=4.3e-07 Score=100.92 Aligned_cols=255 Identities=14% Similarity=0.045 Sum_probs=132.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
++.|+..|.++++.+|..|+..|..+.. .++++.|+..|+++++.++..|+.+|..+..... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-~----- 685 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-P----- 685 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-c-----
Confidence 6677788888888888888877776542 2346777777777777777777777766632211 0
Q ss_pred hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC---------Ccc--------ccccCCcHHHHHHhhhcCCcHHHHH
Q 014196 154 EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN---------THI--------PLSSSEILPFLVGILESGSSVETKE 216 (429)
Q Consensus 154 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~---------~~~--------~i~~~g~i~~Lv~lL~~~~~~~~~~ 216 (429)
.+.|...|.+.+..+|..++.+|..+...+. ... .++.-+..+.|..++.+.+. .++.
T Consensus 686 ----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~-~VR~ 760 (897)
T PRK13800 686 ----APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR-EVRI 760 (897)
T ss_pred ----hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH-HHHH
Confidence 1123334444445555544444443321000 000 00000112334444444443 4455
Q ss_pred HHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCCh
Q 014196 217 LCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKP 295 (429)
Q Consensus 217 ~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~ 295 (429)
.++.+|..+... +.+.++.|..++.|.+ .++..|+..|..+-..+ .++..++..|. +.++
T Consensus 761 ~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~-d~d~ 821 (897)
T PRK13800 761 AVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALR-ASAW 821 (897)
T ss_pred HHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhc-CCCh
Confidence 555555444321 1122555666666554 55555555555442210 11123555555 4556
Q ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccccCCCC
Q 014196 296 KCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSIGSPV 375 (429)
Q Consensus 296 ~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (429)
.++..|+.+|..+.. ..+++.|+.++.+.+..++..|++.|..+..+++. .+.+. ....++
T Consensus 822 ~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a------~~~L~--~al~D~ 882 (897)
T PRK13800 822 QVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAA------RDALT--TALTDS 882 (897)
T ss_pred HHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHH------HHHHH--HHHhCC
Confidence 666666666654421 12457888888888888888888887776322210 00010 122244
Q ss_pred ChhhhHHHHHHHH
Q 014196 376 SPREAQEGKKMMK 388 (429)
Q Consensus 376 ~~~~~~~~k~~l~ 388 (429)
+.+.+..+.+||.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 6667777777764
No 32
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.4e-07 Score=96.72 Aligned_cols=258 Identities=13% Similarity=0.082 Sum_probs=191.7
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhh-hchHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCc
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAK-EDVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~ 147 (429)
...+.+|++.|+.. ++..|.+|+.+|..+-. .+++.-.-+--.-.||.||.+|+.. +.++...|+.||.+|+.--++
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34688999999866 88899999999987543 2333222333345699999999875 689999999999999977666
Q ss_pred hHHHHHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 148 NKAIMVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
....+|+.++||.|+.-|..-+ .++-+.+..+|..||. .+-..|-.+|++-..+..|.--+. .+++.|+.+-.|.|
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~H~~AiL~AG~l~a~LsylDFFSi-~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--RHPKAILQAGALSAVLSYLDFFSI-HAQRVALAIAANCC 322 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hccHHHHhcccHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7788889999999987665433 6667778888999885 344566689999999999988776 68999999999999
Q ss_pred c--CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC----ChhcHHHHhcCCCChHHHHHhcccCC---Chh
Q 014196 227 A--VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV----TSTGKKAMEDSPLVPESLIEILTWEE---KPK 296 (429)
Q Consensus 227 ~--~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~----~~e~~~~i~~~~~i~~~Lv~~L~~~~---s~~ 296 (429)
. .++.-..++ +++|.|-.+|...+ ...|.++-++..++. .++--+.+..++-+ ....++|.... +..
T Consensus 323 ksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi-~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 323 KSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLI-TNIQQLLSVTPTILSNG 399 (1051)
T ss_pred hcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHH-HHHHHHHhcCccccccc
Confidence 7 344445555 47999999998665 777887777776664 35556677776655 46777775211 112
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc
Q 014196 297 CQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL 334 (429)
Q Consensus 297 ~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~ 334 (429)
..---+..|..+|.+++-....+.+.|+...|..++..
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 23344556667777888888889999999999998875
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.80 E-value=2.7e-07 Score=90.04 Aligned_cols=275 Identities=18% Similarity=0.156 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHH-------HHHHHHHHHHHhcc
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIG-------RRRAAIKALIQLAN 143 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~-------~~~~A~~aL~nLa~ 143 (429)
...-.+++.|.+.-.+...+.++++-.-+.+++..+-.+++.|.++.++++++. .+.. .-..++....-|..
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 344556666665533444556666666556677889999999999999999976 2211 11222222333455
Q ss_pred CCCchHHHHHhcC-ccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhc-----CCcHHHHHH
Q 014196 144 GTYTNKAIMVEAG-ILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILES-----GSSVETKEL 217 (429)
Q Consensus 144 ~~~~nk~~iv~~G-~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~ 217 (429)
+++ .-+.+...| .+..++..+.+.+....-..+.++.|++..|+++..+.+.|.+..|+.+|.. |+. +.+.+
T Consensus 303 GDe-SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV-~~qhA 380 (604)
T KOG4500|consen 303 GDE-SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNV-ERQHA 380 (604)
T ss_pred Cch-HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccc-hhHHH
Confidence 653 555565555 7888888888888777777788999999999999999999999999998864 444 67888
Q ss_pred HHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC-cchHHHHHHHHHHhhCChh-cHHHHhcCCCChHHHHHhcccCCCh
Q 014196 218 CIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-ERLSEKSLATLGNLVVTST-GKKAMEDSPLVPESLIEILTWEEKP 295 (429)
Q Consensus 218 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~a~~~L~~La~~~e-~~~~i~~~~~i~~~Lv~~L~~~~s~ 295 (429)
++.||.||...-.|+..++.+|++..++..++-. ++++-+-+++|.-+....+ ..-...++...+..||+ |+.++
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~---Wsks~ 457 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD---WSKSP 457 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH---hhhCC
Confidence 9999999999999999999999999999998754 3888888888887665433 33344444333334444 43333
Q ss_pred h---HHHHHHHHHHHHhhC--CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 296 K---CQELSAYILMILAHQ--SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 296 ~---~~e~A~~~L~~L~~~--~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
+ ..-..-..|..+-.+ ..+....+.+.|+|..++.++....-..+..|.-.|..+.
T Consensus 458 D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 458 DFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred ccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 2 223334445555554 3456777888899999999888776666777766554444
No 34
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=9.2e-07 Score=91.87 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=195.9
Q ss_pred CChhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhc
Q 014196 66 IEEDDCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST--EVIGRRRAAIKALIQLA 142 (429)
Q Consensus 66 ~~~~~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa 142 (429)
......+.|+.|+.++.+. -.+.|+.|+..|..+++ +.|..+... |+++|+..|.. .|+++...++.++.++.
T Consensus 16 k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 16 KQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred ccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 3344667899999999876 46899999999999997 466666555 58999999986 48999999999999998
Q ss_pred cCCC-----ch-H------HHHH-----hcCccchhhhhccCCCHHHHHHHHHHHHHhhccC--CCcccc-ccCCcHHHH
Q 014196 143 NGTY-----TN-K------AIMV-----EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA--NTHIPL-SSSEILPFL 202 (429)
Q Consensus 143 ~~~~-----~n-k------~~iv-----~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i-~~~g~i~~L 202 (429)
.+++ ++ + ..|. ..+-|..++..+..-+..+|..+..+|.+|-..- +.+..+ ...-+|..|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 7763 11 2 1222 3577888888887777888888888888776443 333333 367789999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh-cCcHHHHHHhccCC-----cchHHHHHHHHHHhhC-ChhcHHHH
Q 014196 203 VGILESGSSVETKELCIGALYNLSAVLDNARPMVS-NGVVHTLLKLCSMK-----ERLSEKSLATLGNLVV-TSTGKKAM 275 (429)
Q Consensus 203 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~-----~~~~~~a~~~L~~La~-~~e~~~~i 275 (429)
+.+|.+.-. .+|..++-.|..|.....+..++|. .++|..|..++... +-+++.|+..|-||-+ +..++..+
T Consensus 172 mdlL~DsrE-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 172 MDLLRDSRE-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHHHhhhhh-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 999988765 5889999999999998888877776 59999999999743 2689999999999998 45566666
Q ss_pred hcCCCChHHHHHhcccC--CChh------HH----HHHHHHHHHHhh-C-C----HHHHHHHHhCCchHHHHHHhhcC--
Q 014196 276 EDSPLVPESLIEILTWE--EKPK------CQ----ELSAYILMILAH-Q-S----SEQRDKMAKSGIVHVSLQLALLG-- 335 (429)
Q Consensus 276 ~~~~~i~~~Lv~~L~~~--~s~~------~~----e~A~~~L~~L~~-~-~----~~~~~~i~~~G~v~~L~~ll~~~-- 335 (429)
.+ |+-+|.|.++|.+. ++.. -+ -.+..++..+.. + . ..+.++|...+++..|+.++-+.
T Consensus 251 rE-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 251 RE-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred hc-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence 66 44456899888752 2210 11 123333333332 1 1 13456788889999999887764
Q ss_pred CHHHHHHHH
Q 014196 336 SPLAQRRAS 344 (429)
Q Consensus 336 ~~~~k~~A~ 344 (429)
..+++..+.
T Consensus 330 p~dIltesi 338 (970)
T KOG0946|consen 330 PADILTESI 338 (970)
T ss_pred cHhHHHHHH
Confidence 344554444
No 35
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.77 E-value=5.1e-08 Score=95.37 Aligned_cols=176 Identities=17% Similarity=0.118 Sum_probs=134.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHhccCCCch
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST----EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.+..+++.+..+|...+..|+..|..+...++....... .+.++.+++.|.+ ++.+.+..|+.+|.+|.... ..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hh
Confidence 577888888888999999999999998876654333322 5567888888775 45667899999999999886 69
Q ss_pred HHHHHhcCccchhhhhc-----cC--CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 149 KAIMVEAGILTKLPKNV-----DA--VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL-----~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
|..+++.|+++.++.++ .. .....+.++..++|-||..++....+...+.||.|+.+++....+++.+-++.+
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999 22 225667788889999999888877888888999999999988777899999999
Q ss_pred HHHhccCCC--ChhHHHhcCcHHHHHHhccC
Q 014196 222 LYNLSAVLD--NARPMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 222 L~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~ 250 (429)
|.||..... +...|+..|+.+.+-.+...
T Consensus 264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999998766 77889988877766666543
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.73 E-value=1.4e-06 Score=96.84 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=132.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
+.++.|+.+|.++|+.+|..|+.+|..+. ..++++.|+..|...+..+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 45789999999999999999999998764 2345677888898888999998888888774211
Q ss_pred ccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-----
Q 014196 194 SSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV----- 267 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~----- 267 (429)
...+.|...|.+.++ .++..|+.+|..+.. +-...++..|.|.+ .++..|+.+|..+-.
T Consensus 684 ---~~~~~L~~~L~~~d~-~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~ 748 (897)
T PRK13800 684 ---PPAPALRDHLGSPDP-VVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVA 748 (897)
T ss_pred ---CchHHHHHHhcCCCH-HHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHH
Confidence 123567777777665 677777777766542 11234455555554 455555555543210
Q ss_pred ------ChhcHHHHhc--------CCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh
Q 014196 268 ------TSTGKKAMED--------SPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333 (429)
Q Consensus 268 ------~~e~~~~i~~--------~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~ 333 (429)
+++.|..... .....+.|..++. +.++.++..|+.+|..+... + .+++.|+..+.
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~ 817 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG-DPDPLVRAAALAALAELGCP-P---------DDVAAATAALR 817 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc-CCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhc
Confidence 0111111100 0011235555555 45566666666666554221 0 11245666677
Q ss_pred cCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccccCCCCChhhhHHHHHHHHHH
Q 014196 334 LGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSIGSPVSPREAQEGKKMMKNL 390 (429)
Q Consensus 334 ~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 390 (429)
+.+..++..|++.|..+.... +.+.+ +....+.+.+.+..+-++|-.+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~~~-------a~~~L--~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAADV-------AVPAL--VEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccccc-------hHHHH--HHHhcCCCHHHHHHHHHHHhcc
Confidence 777777888887776654311 00001 1222344677788888877664
No 37
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.8e-06 Score=81.81 Aligned_cols=184 Identities=21% Similarity=0.171 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhh
Q 014196 83 FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLP 162 (429)
Q Consensus 83 ~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv 162 (429)
+.+.+.+..|...|..++. +-+|...+...|+..+|+..|++.+..+|+.|+++|..++.+++...+.+.+.|+++.|.
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4478999999999999985 668999999999999999999999999999999999999999987788999999999999
Q ss_pred hhccCCC-HHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcC-CcHHHHHHHHHHHHHhccCC-CChhHHHhc
Q 014196 163 KNVDAVD-ESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESG-SSVETKELCIGALYNLSAVL-DNARPMVSN 238 (429)
Q Consensus 163 ~lL~~~~-~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~ 238 (429)
..+.+.+ ...+..|..++..|-.+. .....+-..++...|..++.++ .....++.++..+.+|.... .+...+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9997554 445566666777666443 2334444667799999999985 33368888888888887643 344434444
Q ss_pred CcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 239 GVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 239 G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
|....+..+...-+ ++.+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 55555555554333 777777776654443
No 38
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.58 E-value=1.4e-06 Score=72.35 Aligned_cols=116 Identities=21% Similarity=0.117 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
-.+.++.||...+.. +.+.|.+...-|.++|- ||-|-..+.+..+++..|+.|..+|..+.+.++..|+|++.+. .|
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n 91 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TN 91 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HH
Confidence 467789999988754 78888888888999985 7899999999999999999999999999999999999999997 79
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA 187 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~ 187 (429)
+..|++++++|.++.++.++...+...++.++..|+.-.
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999888888888888999888544
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.50 E-value=2.1e-05 Score=82.37 Aligned_cols=276 Identities=16% Similarity=0.169 Sum_probs=175.2
Q ss_pred ccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHH
Q 014196 38 EKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQ 117 (429)
Q Consensus 38 ~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~ 117 (429)
.+|+.+|++..-...... ... .+.-.-.+..+.+.|.++++..+..|+..|.++. +++....+ ++
T Consensus 53 s~~~~~Krl~yl~l~~~~------~~~--~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~ 117 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYL------HED--PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IP 117 (526)
T ss_dssp SSSHHHHHHHHHHHHHHT------TTS--HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HH
T ss_pred CCCHHHHHHHHHHHHHHh------hcc--hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HH
Confidence 699999999999887551 000 1122345678888899999999999999999987 44444443 78
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCC
Q 014196 118 MLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197 (429)
Q Consensus 118 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 197 (429)
.+..+|.++++.+|..|+.++..+...+++ .+-.. .++.+..++.+.+..++..|..++..+...+ +... .
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~--~~~~---~ 188 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCND--DSYK---S 188 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTH--HHHT---T
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCc--chhh---h
Confidence 899999999999999999999999876532 22233 6788899998888888888888888881111 1100 3
Q ss_pred cHHHHHHh----hhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcH
Q 014196 198 ILPFLVGI----LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGK 272 (429)
Q Consensus 198 ~i~~Lv~l----L~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~ 272 (429)
.++.+++. +...++ -.+..++..|..++........ ....++.+..++.+.. .++-.|+.++..+...+...
T Consensus 189 ~~~~~~~~L~~~l~~~~~-~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~ 265 (526)
T PF01602_consen 189 LIPKLIRILCQLLSDPDP-WLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELL 265 (526)
T ss_dssp HHHHHHHHHHHHHTCCSH-HHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred hHHHHHHHhhhcccccch-HHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHH
Confidence 34444444 445555 4666777777777654322210 0445666777666543 66667777777766655422
Q ss_pred HHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL-LGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~-~~~~~~k~~A~~lL~~l~ 351 (429)
..+ + +.|++++. +.++..+-.++..|..++...+ ..+. . ....+..+. +.+..+|.+|..+|..+.
T Consensus 266 ~~~-----~-~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~----~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 266 QKA-----I-NPLIKLLS-SSDPNVRYIALDSLSQLAQSNP----PAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHH-----H-HHHHHHHT-SSSHHHHHHHHHHHHHHCCHCH----HHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred Hhh-----H-HHHHHHhh-cccchhehhHHHHHHHhhcccc----hhhh-h-hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 222 2 36777776 6666677777777777765431 1222 2 122233333 556677777777766666
Q ss_pred hc
Q 014196 352 DE 353 (429)
Q Consensus 352 ~~ 353 (429)
+.
T Consensus 333 ~~ 334 (526)
T PF01602_consen 333 NE 334 (526)
T ss_dssp -H
T ss_pred cc
Confidence 53
No 40
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.49 E-value=2.5e-07 Score=61.74 Aligned_cols=41 Identities=27% Similarity=0.197 Sum_probs=38.5
Q ss_pred chHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 014196 103 DVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 103 ~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 143 (429)
++++++.+++.|+||+|+.+|.++++++++.|+|+|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999973
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.6e-06 Score=79.79 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHH
Q 014196 168 VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLK 246 (429)
Q Consensus 168 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~ 246 (429)
.+.+.++.|..-|..+..+-+|...+...|+..+|+..+++.++ .+|+.|+++|...+.+ +.....+.+.|+.+.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~-~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA-ELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 34667777777777787776888888899999999999999888 8999999999998874 556688999999999999
Q ss_pred hccCCc--chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHHHHhhCCHHHHHHHHhC
Q 014196 247 LCSMKE--RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILAHQSSEQRDKMAKS 322 (429)
Q Consensus 247 lL~~~~--~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~ 322 (429)
.|...+ ..+.+|+.++..|.. ++.+...+...+|.. .|.++|... .+...+..++..+..+..........+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~-~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQ-VLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHH-HHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 998543 777899999998887 688999999999976 999999821 567788888888888887665666666667
Q ss_pred CchHHHHHHhhcCCHHHHHHHHH-HHHHHHh
Q 014196 323 GIVHVSLQLALLGSPLAQRRASK-LLQWFKD 352 (429)
Q Consensus 323 G~v~~L~~ll~~~~~~~k~~A~~-lL~~l~~ 352 (429)
|....+..+.......+++.|.. +|..+.+
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 76666677777777888888886 5666655
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.3e-06 Score=88.46 Aligned_cols=213 Identities=14% Similarity=0.149 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
...+|.||..|+.. +.+....|+++|..|+.--|..-..+++.|+||.|+.-|.. .-.++-|.++.||-.|+....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 45689999999866 78999999999999998888888999999999999987654 567899999999999998753
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
..|.++|++...+..|.......++.|.++..|+|..- +.-..+ ..++|.|..+|+..+. +..+.++.++..++
T Consensus 288 -~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~-k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 288 -KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDK-KPIESVCICLTRIA 363 (1051)
T ss_pred -HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccc-hhHHHHHHHHHHHH
Confidence 67889999988888887767788888888888888542 111222 3579999999999887 78888999998887
Q ss_pred c---CCCCh-hHHHhcCcHHHHHHhccCCc-----chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcc
Q 014196 227 A---VLDNA-RPMVSNGVVHTLLKLCSMKE-----RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 227 ~---~~~n~-~~iv~~G~v~~Lv~lL~~~~-----~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
. +..++ ..+...|.|.....||.-.+ .+--..+..|..+|. ++..+....+.+ |...|..+|.
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~-I~~~L~~il~ 436 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLD-IADTLKRILQ 436 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhh-HHHHHHHHHh
Confidence 4 34444 77888899999999886431 444445566667776 477777666633 4346666654
No 43
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.38 E-value=2e-05 Score=77.84 Aligned_cols=261 Identities=14% Similarity=0.132 Sum_probs=175.3
Q ss_pred HHHHHHHHHhcCCCHHH--HHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCch
Q 014196 72 VLLQKSVKRLHFGSWEE--KEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~--~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
+.+..|++++..++.+. +.+|+..|..+.. .+||..++.-| ...++.+-+. ..++.+...+..|.++-.|+++.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 45778999999987654 7889999988764 46888888866 4444444333 45788888999999999998777
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
.+.++++|+++.++.-....++...+++|.+|.|++.+. ..+..|.+..+-+-|..+-.+.+. -++-+||.+.+-|+
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe-l~R~~AClAV~vla 335 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE-LLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH-HHHHHHHHHHhhhh
Confidence 889999999998877777777889999999999998765 455566665566666666666654 57889999999999
Q ss_pred cCCCChhHHHhcCcH---HHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 227 AVLDNARPMVSNGVV---HTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 227 ~~~~n~~~iv~~G~v---~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.+.+.-..+...|-+ .+++..+. +..+.+.+- ....|+. -..+ ..||.+|. +. .....+++
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~D-P~~FARD~h-------d~aQG~~----~d~L-qRLvPlLd-S~--R~EAq~i~ 399 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLD-PGRFARDAH-------DYAQGRG----PDDL-QRLVPLLD-SN--RLEAQCIG 399 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccC-cchhhhhhh-------hhhccCC----hHHH-HHhhhhhh-cc--hhhhhhhH
Confidence 877666666666654 34444332 223333211 0111110 0112 25666775 22 22333455
Q ss_pred HHHHHhh----CCHHHH-HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 304 ILMILAH----QSSEQR-DKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 304 ~L~~L~~----~~~~~~-~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+.+ +|. .+.+.. +..-+-|+|+.|-++..+.+..+-+-|...|..+++.
T Consensus 400 AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 400 AFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 543 453 223333 3444469999999999876666667788899999874
No 44
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.32 E-value=6e-06 Score=68.66 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=110.8
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHH
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKK 273 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~ 273 (429)
..+.+..||.-.......++|+....-|.|.+-++-|-..+.+..++...++.|...+ .+++.+++.|+|+|-.+.+.+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 3456777777776655558999999999999999999999999999999999998775 889999999999999999999
Q ss_pred HHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHH
Q 014196 274 AMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQ 330 (429)
Q Consensus 274 ~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ 330 (429)
.|++++|+| .++..++ +......-.|+..|+.||-.....+..+..--++..+.+
T Consensus 94 ~I~ea~g~p-lii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 94 FIREALGLP-LIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHhcCCc-eEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 999999997 7888887 566667778889999998777778888876444444433
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.28 E-value=4.5e-05 Score=76.82 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAEL-----GVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~-----G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
..+..++..|... +.+...-.+.-+-.+...++..-..+.+. ....+++.+|..+|.-++..|...|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4456666666643 44555556666666776676655566653 46778888999999999999999999987553
Q ss_pred CchHHHHHhcCccchhhhhccCC-CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCC-cHHHHHHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAV-DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGS-SVETKELCIGALY 223 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~~A~~aL~ 223 (429)
..+.......-.++-|...+.++ +...+..++..|..|-..+..|..+.+.++++.|+.+|+... ..+..-.++-++|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 22211111001222334444443 255566677888898888889988888889999999998754 3478899999999
Q ss_pred HhccCCCChhHHHhcCcHHHHHHhccCC--cchHHHHHHHHHHhhCCh-------hcHHHHhcCCCChHHHHHhcccC--
Q 014196 224 NLSAVLDNARPMVSNGVVHTLLKLCSMK--ERLSEKSLATLGNLVVTS-------TGKKAMEDSPLVPESLIEILTWE-- 292 (429)
Q Consensus 224 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~a~~~L~~La~~~-------e~~~~i~~~~~i~~~Lv~~L~~~-- 292 (429)
-|+..++....+.+.|.|+.|++++++. +.+++-++++|.||...+ .....++.. +++ .+++.|...
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~-~~l~~L~~rk~ 290 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVL-KTLQSLEQRKY 290 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChH-HHHHHHhcCCC
Confidence 9999888777778889999999999876 489999999999999843 122345554 454 577766511
Q ss_pred CChhHHH---------------------HHHHHHH-----HHhhCC----HHHHHHHHhCC--chHHHHHHhhc-CCHHH
Q 014196 293 EKPKCQE---------------------LSAYILM-----ILAHQS----SEQRDKMAKSG--IVHVSLQLALL-GSPLA 339 (429)
Q Consensus 293 ~s~~~~e---------------------~A~~~L~-----~L~~~~----~~~~~~i~~~G--~v~~L~~ll~~-~~~~~ 339 (429)
++++..+ +...+.. .-.+.+ .++...+.+.+ ++..|+.++.. .++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 2333221 1111110 111222 24555555543 56777777753 35555
Q ss_pred HHHHHH-HHHHHHhccccCCCCCCCCCcc---cc-ccCCCCChhhhHHHHHHHHHHH
Q 014196 340 QRRASK-LLQWFKDERQAKMGPHSGPQTR---RV-SIGSPVSPREAQEGKKMMKNLV 391 (429)
Q Consensus 340 k~~A~~-lL~~l~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~k~~l~~~~ 391 (429)
..-|+. +-+..+..|.+|... -.++ .+ .......++.+.+|=++++.|+
T Consensus 371 laVAc~Dige~vr~~P~gr~i~---~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVV---EQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHH---HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 666664 555555544432110 0111 11 2223336667777766666553
No 46
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.28 E-value=3.5e-05 Score=80.71 Aligned_cols=253 Identities=17% Similarity=0.188 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...++.+.+.|.++++.+|+.|+..+..+.+.+++. +... .++.|..+|.+.|+.++.+|+.++..+ ..+ .+.
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~--~~~ 185 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN--DDS 185 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT--HHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccC--cch
Confidence 345677888888999999999999999999877652 3333 689999999999999999999999999 222 111
Q ss_pred HH-HhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IM-VEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~i-v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.. .-...++.|..++...++-.+..+..+|..++........ ....++.+..++.+.+. .+.-.|+.++.++....
T Consensus 186 ~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~-~V~~e~~~~i~~l~~~~ 262 (526)
T PF01602_consen 186 YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSP-SVVYEAIRLIIKLSPSP 262 (526)
T ss_dssp HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSH
T ss_pred hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhcccc-HHHHHHHHHHHHhhcch
Confidence 11 1112333444444556666666666666655532211110 03456777777776555 56666777777666543
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
. .-..++++|+.+|.+++ .++--++..|..++... ...+. .. ...+..+..+.+...+..++.+|..+
T Consensus 263 ~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~-~~---~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 263 E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF-NQ---SLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG-TH---HHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh-hh---hhhhheecCCCChhHHHHHHHHHhhc
Confidence 3 33456777777777665 56667777777776632 22222 11 12233333246667777777777777
Q ss_pred hhCCHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 014196 309 AHQSSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFK 351 (429)
Q Consensus 309 ~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~ 351 (429)
+. +++... +++.|...+.. +++..++.+...+..+.
T Consensus 332 ~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 332 AN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp ----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred cc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 64 333333 35555555533 35556666665444444
No 47
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.10 E-value=1.6e-06 Score=63.52 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=41.5
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHH
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQE 50 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W 50 (429)
|..|+.. --|++|+| |++|+..+.. .|++++...+++||..||+.|++|
T Consensus 11 ~~~Pv~~-~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 11 MKDPVIL-PSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CCCCEEC-CCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4456654 45899999 9999987544 999999888999999999999998
No 48
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.07 E-value=0.00052 Score=68.51 Aligned_cols=253 Identities=16% Similarity=0.133 Sum_probs=170.6
Q ss_pred HHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC--HH
Q 014196 94 KEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD--ES 171 (429)
Q Consensus 94 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~--~~ 171 (429)
..|-.+-++.+..|..+.-.-..+.+..++-+++.+++.+|..+++.+..+. ..-..+.+.+.--.++..|.... ..
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChH
Confidence 3455555666666666655555666665666666999999999999999886 56777777765545566665332 44
Q ss_pred HHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC
Q 014196 172 TRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 172 ~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
.|++|...+..+....+....+ ..|.+..+|.+..+.+. ..+..|+.+|+.|+.. |-..++++|++..|++.+.++
T Consensus 84 ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D-~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDD-RLRRICLETLCELALL--NPELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhc
Confidence 5778888777776554333333 56788999999998776 7999999999999974 345678899999999998876
Q ss_pred c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccC------CCh--hHHHHHHHHHHHHhhCCHHHHHHHHhC
Q 014196 252 E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE------EKP--KCQELSAYILMILAHQSSEQRDKMAKS 322 (429)
Q Consensus 252 ~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~------~s~--~~~e~A~~~L~~L~~~~~~~~~~i~~~ 322 (429)
. ++.+..+.++..+..+|..|+.+...-.+. .++.-+... ++. .--..+..++..+-..-+...-.-...
T Consensus 160 ~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~-~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSPRTRKYLRPGFDLE-SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred cHhHHHHHHHHHHHHhCCcchhhhhcCCccHH-HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 4 788888889999999999999887644443 555544311 111 122334444444433222222111121
Q ss_pred -CchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 323 -GIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 323 -G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.++..|+..+...++++++.-..++..+=+
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 468889999998888888887776544443
No 49
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00081 Score=63.66 Aligned_cols=271 Identities=15% Similarity=0.163 Sum_probs=169.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
.+..+|..|++.++.++..|+.-+-.++.. ..+..... .-.++.|.+++...++ -+.|+.+|.|++.+. .-+..
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ 78 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKK 78 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHH
Confidence 356789999999999999999888888765 22322222 3457888999987766 677899999999986 46666
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc-------cCCcHHHHHHhhhcCCcH-HHHHHHHHHHH
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS-------SSEILPFLVGILESGSSV-ETKELCIGALY 223 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-------~~g~i~~Lv~lL~~~~~~-~~~~~A~~aL~ 223 (429)
+.+. .+..++..+-.+....-..++.+|.||+..++....+- +.|.+...+.....+-.. .--...+-.+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 6665 66666777666655555667788999998775433321 244444444444433210 12345567788
Q ss_pred HhccCCCChhHHHhcCcHHH--HHHhccCCc-chHH-HHHHHHHHhhCChhcHHHHhcC---------------------
Q 014196 224 NLSAVLDNARPMVSNGVVHT--LLKLCSMKE-RLSE-KSLATLGNLVVTSTGKKAMEDS--------------------- 278 (429)
Q Consensus 224 nLs~~~~n~~~iv~~G~v~~--Lv~lL~~~~-~~~~-~a~~~L~~La~~~e~~~~i~~~--------------------- 278 (429)
||+.....+..+.+-..+|. ++.+-. .+ .+++ ..+++|.|.|-.......+...
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 88888777766665543332 222212 22 2222 2355666655433333322221
Q ss_pred --CCChHHHHHhcc----cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 014196 279 --PLVPESLIEILT----WEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG-SPLAQRRASKLLQWFK 351 (429)
Q Consensus 279 --~~i~~~Lv~~L~----~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~~k~~A~~lL~~l~ 351 (429)
...|.-| ++|. +..++..+..-+.+|+-||.. ...|+.+...|+.|.|-++-... ++++.+.+-.+.+.+-
T Consensus 237 dm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 237 DMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 2233223 5554 135677888889999999974 56788888889766666655543 5667776667888877
Q ss_pred h
Q 014196 352 D 352 (429)
Q Consensus 352 ~ 352 (429)
+
T Consensus 315 ~ 315 (353)
T KOG2973|consen 315 R 315 (353)
T ss_pred h
Confidence 5
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.04 E-value=0.00021 Score=70.13 Aligned_cols=275 Identities=15% Similarity=0.049 Sum_probs=183.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcC-cHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELG-VIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G-~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
....+..|..++......+...+..++..... +-...+.. ....|-..+++ .+++...-|+.+|..+...+ +.|-.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhhe
Confidence 45677778877777776677777777754321 11111110 01223344444 56677777888999999997 59999
Q ss_pred HHhcCccchhhhhccC--CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 152 MVEAGILTKLPKNVDA--VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
++.+.++..++..+.+ .+...+.+..-.+|-|+.++.....+...+.|+.|+.++++...+++.+-++.++.|+....
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998842 33667777888999999887666666678899999999998876678889999999998765
Q ss_pred C-------ChhHHHhcCcHHHHHHhccCC---c-chHHHH---HHHH----HHhhCChhcHHHHhc--------------
Q 014196 230 D-------NARPMVSNGVVHTLLKLCSMK---E-RLSEKS---LATL----GNLVVTSTGKKAMED-------------- 277 (429)
Q Consensus 230 ~-------n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a---~~~L----~~La~~~e~~~~i~~-------------- 277 (429)
+ ....|+..+ ++.-++.|... | ++++.. ...| ..|+..++...++..
T Consensus 274 ~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred chhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 3 234556555 45555555421 2 222211 1111 223333332222221
Q ss_pred -----------CCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 014196 278 -----------SPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKL 346 (429)
Q Consensus 278 -----------~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~l 346 (429)
.-.+...|+++|..+.+|..-.-|+.=+...-.+.|+.+..+.+-|+=..+..++...+++++-.|...
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 112345788888744445555556666666666678899999999999999999999999999999987
Q ss_pred HHHHH
Q 014196 347 LQWFK 351 (429)
Q Consensus 347 L~~l~ 351 (429)
++.|-
T Consensus 433 vQ~lm 437 (442)
T KOG2759|consen 433 VQKLM 437 (442)
T ss_pred HHHHH
Confidence 76553
No 51
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.03 E-value=0.00018 Score=74.15 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccccccCCcHHHHH
Q 014196 125 TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLV 203 (429)
Q Consensus 125 s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv 203 (429)
..|.....+|+..+.+.+..-..-+...-...+..+|++++..++..++..+.++|.||... .+.+..+...|+|..|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34667777777777777654322344444567888999999888877777788899999754 46788888999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHHhccCCCChhHHH-hcC-cHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhc
Q 014196 204 GILESGSSVETKELCIGALYNLSAVLDNARPMV-SNG-VVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMED 277 (429)
Q Consensus 204 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv-~~G-~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~ 277 (429)
.++.+.+. ..+..++++|+++..+.++..... .+. .-..++.+..|++ +++|.|..+|+|+... .+.-..+.+
T Consensus 468 s~~~~~~~-n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 468 SMLTDPDF-NSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHhcCCCc-hHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 99999887 689999999999998776653322 222 2345677788888 9999999999999874 444444444
No 52
>PF05536 Neurochondrin: Neurochondrin
Probab=98.00 E-value=0.00035 Score=73.23 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=117.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch---HHHHHhcCccchhhhhccCCC-------HHHHHHHHHHHHHhhc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN---KAIMVEAGILTKLPKNVDAVD-------ESTRHEFGELLLSLSS 185 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n---k~~iv~~G~i~~Lv~lL~~~~-------~~~~~~aa~~L~~Ls~ 185 (429)
+..-+.+|+..+.+-+-.++..+.++..+++.+ ++.|.++=+.+.|-++|.++. ...+.-+..+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 445578898888666777788888887776533 446788877888999998733 3445556778888887
Q ss_pred cCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHh
Q 014196 186 LANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNL 265 (429)
Q Consensus 186 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~L 265 (429)
.++....-.-.+-||.|++++.+++...+...|+.+|..++.+++.+..+++.|+|+.|.+.+.+.....+.++.+|.++
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~L 166 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNL 166 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 55432211113569999999988765467889999999999999999999999999999999988667889999999988
Q ss_pred hCC
Q 014196 266 VVT 268 (429)
Q Consensus 266 a~~ 268 (429)
+..
T Consensus 167 ls~ 169 (543)
T PF05536_consen 167 LSR 169 (543)
T ss_pred HHh
Confidence 763
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=97.94 E-value=0.0052 Score=66.59 Aligned_cols=257 Identities=14% Similarity=0.055 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
....+..++.+.+.+.+.|+-....+.+.++.+++..-. +|..|..=+.++|+.+|-.|+.+|.++-... .-.
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e 139 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLE 139 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHH
Confidence 345677888888889888888888888888877664322 2667788888999999999999998775432 222
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.+ ++++.+++...++-+|..|+.++..+-..+. ..+.+.|.++.|.++|.+.++ .+..+|+.+|..+.....
T Consensus 140 ~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 140 YT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCc
Confidence 22 3446777888889999999998888864332 334467889999999998887 789999999999986543
Q ss_pred ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 231 NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
+.. -...+.+..|+..|.+.+ -.+-..+.+|.. ..|....... .+...+...|. +.++.+.-.|+.+++.+.
T Consensus 212 ~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P~~~~e~~---~il~~l~~~Lq-~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 212 EKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA--QRPSDKESAE---TLLTRVLPRMS-HQNPAVVMGAIKVVANLA 284 (746)
T ss_pred hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCCCCcHHHH---HHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Confidence 321 223455677777776553 233333444422 1233222221 23346667777 778888888888888877
Q ss_pred hC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 310 HQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 310 ~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
.. +++..+.+.. .+.++|+.|+ ++++.+|--+..-+..+.
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 54 2333222221 2336677764 456777777775444443
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=97.91 E-value=0.0036 Score=67.82 Aligned_cols=245 Identities=11% Similarity=0.058 Sum_probs=147.2
Q ss_pred cchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHH
Q 014196 39 KSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQM 118 (429)
Q Consensus 39 PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~ 118 (429)
+|..+|+++.-+..... . ...+...-.+..+.+.+.++|+..|.-|++.+..+-. ++.-.. .+++
T Consensus 80 ~d~elKKLvYLYL~~ya-----~---~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~ 144 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTA-----R---LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEP 144 (746)
T ss_pred CCHHHHHHHHHHHHHHc-----c---cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHH
Confidence 45566666655554330 0 0011123457788888888888888777776666542 222222 2667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCc
Q 014196 119 LVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEI 198 (429)
Q Consensus 119 Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~ 198 (429)
+..+|.+.++-||..|+.++.++-..+. ..+.+.|.++.|..+|...+..+..+|..+|..+...+..... ...+.
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~ 220 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEW 220 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHH
Confidence 8888999999999999999999976542 4455678888999999988888999999999999754322111 12344
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC--hhcHHHH
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT--STGKKAM 275 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~--~e~~~~i 275 (429)
+..|...|...+. =.+...+.+|.... +.+.... ...+..+...|.... .++-.|+.++.++... ++....+
T Consensus 221 ~~~Ll~~L~e~~E-W~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~ 295 (746)
T PTZ00429 221 VNRLVYHLPECNE-WGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC 295 (746)
T ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 5556666655454 24555666664422 2222211 244555666666543 7777777777777653 3332222
Q ss_pred hcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC
Q 014196 276 EDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ 311 (429)
Q Consensus 276 ~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~ 311 (429)
... +...|+.+++ +++..|-.++..+..+...
T Consensus 296 ~~r--l~~pLv~L~s--s~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 296 TVR--VNTALLTLSR--RDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHH--HHHHHHHhhC--CCccHHHHHHHHHHHHHHH
Confidence 211 1124666643 5566666666555555543
No 55
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.88 E-value=3.1e-05 Score=51.12 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=36.9
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 014196 104 VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 104 ~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 143 (429)
++++..+++.|++++|+.+|.++++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999999999999999999973
No 56
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.88 E-value=3.7e-05 Score=51.09 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=38.0
Q ss_pred CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 312 SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 312 ~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++++++.+++.|++|.|+.++.++++.+++.|+|.|++|.+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999863
No 57
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00023 Score=74.59 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=146.1
Q ss_pred CccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC-CcHHHHHHHHHHHHHhccCCC---
Q 014196 156 GILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG-SSVETKELCIGALYNLSAVLD--- 230 (429)
Q Consensus 156 G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~--- 230 (429)
..|+.|+.-+.+.. .+.|+.|+..|..+|. ++|..++..| +++|++.|..+ ..+++...++.+++++-.+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 34666776665544 7789999999999884 5666666555 78999999864 334788899999999988763
Q ss_pred ---Chh-----------H-HHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC--ChhcHHHHhcCCCChHHHHHhcccC
Q 014196 231 ---NAR-----------P-MVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV--TSTGKKAMEDSPLVPESLIEILTWE 292 (429)
Q Consensus 231 ---n~~-----------~-iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~--~~e~~~~i~~~~~i~~~Lv~~L~~~ 292 (429)
+-. . +-..|-|..|+..+...+ .++..++..|.++-. .++.+.++...+..+..|+++|. +
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~-D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR-D 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-h
Confidence 211 1 223477888888887767 899999999987765 57899999888877789999998 6
Q ss_pred CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-C-CH--HHHHHHHHHHHHHH
Q 014196 293 EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-G-SP--LAQRRASKLLQWFK 351 (429)
Q Consensus 293 ~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~-~~--~~k~~A~~lL~~l~ 351 (429)
..+..|-.++..|..+...++..++.+.=++++..|+.++.. | .+ -+..-+..+|.+|-
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 677788889999999998888888888889999999999986 4 22 34566666554443
No 58
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.84 E-value=9.9e-05 Score=75.93 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhh
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKN 164 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~l 164 (429)
+......|+..++.+++.-...|.-+....++.+||.+|..++..++..++.+|.|+...-...|..+...|+|+.+...
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 45566667777777776444566666678899999999999999999999999999998865569999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 165 VDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
+...+...+..+.++|+++..+++...... ..=....++.+..+++. .+++.++..|.||....
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~-~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDW-AVQEQCFQLLRNLTCNS 535 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCH-HHHHHHHHHHHHhhcCc
Confidence 999999999999999999998887655443 22233466777777776 89999999999997653
No 59
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0019 Score=63.88 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch---------HHHHHHHhcCcHHHHHHhhcCCCHHHH------HHH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV---------KIKKLMAELGVIQMLVSMVSTEVIGRR------RAA 134 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~---------~~r~~i~~~G~i~~Lv~lL~s~~~~~~------~~A 134 (429)
+...++.++..|.+.|.+.-...+.-++.|+..+. ..-..+++.++++.||+.++.-|..+. ..+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34567889999999999998889999999986442 345677888999999999987655444 445
Q ss_pred HHHHHHhccCCCchHHHHHhcCccchhhh-hccC-CCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhc---
Q 014196 135 IKALIQLANGTYTNKAIMVEAGILTKLPK-NVDA-VDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILES--- 208 (429)
Q Consensus 135 ~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~-lL~~-~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~--- 208 (429)
+..+-|+..-.+.....+++.|.+.-|.. +... .-...+..|..+|.-+-.+. .++...+.-.+|..|++-+.-
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 67777777665456778888887755544 2222 22456777777777666554 477778888888888776631
Q ss_pred -----CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhc---HHHHhcCCC
Q 014196 209 -----GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTG---KKAMEDSPL 280 (429)
Q Consensus 209 -----~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~---~~~i~~~~~ 280 (429)
.+..+..++...+|+.+-..++|+..++...++....-+++......-.++.+|-....++++ ...+++..|
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 223456778889999999999999999999999877777765435566778888866665554 455666666
Q ss_pred ChHHHHHhcccCCC---------hhHHHHHHHHHHHHhh
Q 014196 281 VPESLIEILTWEEK---------PKCQELSAYILMILAH 310 (429)
Q Consensus 281 i~~~Lv~~L~~~~s---------~~~~e~A~~~L~~L~~ 310 (429)
.- ++.....+.++ ....|+.+.+|+.+-.
T Consensus 363 Lr-tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 363 LR-TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HH-HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 54 44443221222 2345788888887654
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.83 E-value=0.0023 Score=64.72 Aligned_cols=223 Identities=13% Similarity=-0.035 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLH-FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~-~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
...++.++..|. .++.++...++..+. ..+++. ++..|+..|.+.++.++..++.+|..+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALL--AQEDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence 345777888885 345555554444332 111211 26777777777777777777777753321
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.++.+.|+.++.+.++..+..+..++... .....+.|..+|++.++ .++..|+.+|..+..
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~-~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDA-LVRAAALRALGELPR-- 176 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCH-HHHHHHHHHHHhhcc--
Confidence 12334455666666665555444333331 11234667777766665 567777777765542
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhc---CCC------------------ChHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMED---SPL------------------VPESLIE 287 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~---~~~------------------i~~~Lv~ 287 (429)
...++.|...+.+.+ .++..|+..|..+- .++....+.. ..| +.+.|..
T Consensus 177 --------~~a~~~L~~al~d~~~~VR~aA~~al~~lG-~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 177 --------RLSESTLRLYLRDSDPEVRFAALEAGLLAG-SRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred --------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 234555555565554 55556665554442 2221111110 011 1123333
Q ss_pred hcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 288 ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 288 ~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
++. .+..++.++.+|..+- ...+++.|+..+.+. ..++.|.+.++.+..-+
T Consensus 248 ll~---d~~vr~~a~~AlG~lg-----------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 248 LLQ---AAATRREALRAVGLVG-----------DVEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred Hhc---ChhhHHHHHHHHHHcC-----------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 332 1224444444443321 123677777777543 48888889888888643
No 61
>PF05536 Neurochondrin: Neurochondrin
Probab=97.81 E-value=0.00041 Score=72.74 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=120.9
Q ss_pred hhhhhccCCCHHHHHHHH-HHHHHhhccCC----CccccccCCcHHHHHHhhhcCC------cHHHHHHHHHHHHHhccC
Q 014196 160 KLPKNVDAVDESTRHEFG-ELLLSLSSLAN----THIPLSSSEILPFLVGILESGS------SVETKELCIGALYNLSAV 228 (429)
Q Consensus 160 ~Lv~lL~~~~~~~~~~aa-~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~~------~~~~~~~A~~aL~nLs~~ 228 (429)
.-+.+|+..+ +..+-++ ..+-.+...++ .+..|.++=+..+|-++|+++. ....+.-|+..|..+|..
T Consensus 9 ~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~ 87 (543)
T PF05536_consen 9 KCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD 87 (543)
T ss_pred HHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 3455666555 3333333 34445544332 1223445556799999998832 235677788899999986
Q ss_pred CCCh--hHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 229 LDNA--RPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 229 ~~n~--~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
++.. ..++ +.||.|++++... + .++..|+.+|..++.+++|++++.+.|+++ .|++.+. ..+...+.|..+
T Consensus 88 ~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~-~L~ei~~--~~~~~~E~Al~l 162 (543)
T PF05536_consen 88 PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVP-ALCEIIP--NQSFQMEIALNL 162 (543)
T ss_pred hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHH-HHHHHHH--hCcchHHHHHHH
Confidence 6544 4444 6899999999765 4 889999999999999999999999998886 9999997 377789999999
Q ss_pred HHHHhhCCH-HH----HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 305 LMILAHQSS-EQ----RDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 305 L~~L~~~~~-~~----~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
|.++++... +. ...+. .+++.|...........|-.+..+|.
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~~~kfell~~L~ 209 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHGEDKFELLEFLS 209 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhccchHHHHHHHHH
Confidence 999887422 11 11111 24555555555433344444444443
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.75 E-value=0.00022 Score=70.71 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=126.2
Q ss_pred HHHHHhcCccchhhhhccCCCHHH--HHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDEST--RHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~--~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
...|...|+++.|+++++.++.+. +.+++.+|..+... +|+..++.-| +..++.+-+...+.+..+..+..|-|+-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 456777899999999999888655 78888888877543 5666666443 3333333344444477888999999999
Q ss_pred cCCC-ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC--ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHH
Q 014196 227 AVLD-NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV--TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSA 302 (429)
Q Consensus 227 ~~~~-n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~--~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~ 302 (429)
+|++ .+..++++|++..++.-.+..+ .+.++|+-+|.|++- +.+++..|++... ++.|.-+-. ..++..+-+|+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~-~EWLF~LA~-skDel~R~~AC 328 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRA-AEWLFPLAF-SKDELLRLHAC 328 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhh-hhhhhhhhc-chHHHHHHHHH
Confidence 8765 5689999999999988777554 889999999999886 5678888887444 346766655 45667788999
Q ss_pred HHHHHHhhCCHHHHHHHHhCCc
Q 014196 303 YILMILAHQSSEQRDKMAKSGI 324 (429)
Q Consensus 303 ~~L~~L~~~~~~~~~~i~~~G~ 324 (429)
.+...|+.. .++-..+.+.|.
T Consensus 329 lAV~vlat~-KE~E~~VrkS~T 349 (832)
T KOG3678|consen 329 LAVAVLATN-KEVEREVRKSGT 349 (832)
T ss_pred HHHhhhhhh-hhhhHHHhhccc
Confidence 888887754 566666777774
No 63
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0065 Score=66.59 Aligned_cols=272 Identities=15% Similarity=0.176 Sum_probs=158.8
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCC
Q 014196 73 LLQKSVKRL----HFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVST--EVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 73 ~l~~lv~~L----~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~ 145 (429)
.+|.++.-+ ..++.+.-..+...+-.++...+. .+..+.+ +|..-...-.+ -+..+|..|+..|..++..-
T Consensus 203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 344444443 334444445566666666654443 2222222 12222333333 35788999999988887652
Q ss_pred CchHHHH--HhcCccchhhhhccCCCH----------------HHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhh
Q 014196 146 YTNKAIM--VEAGILTKLPKNVDAVDE----------------STRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILE 207 (429)
Q Consensus 146 ~~nk~~i--v~~G~i~~Lv~lL~~~~~----------------~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 207 (429)
..-.+.. .-.-.++.+..++..... .....|..+|-.++..=..+.. -.-.++.+-.+|.
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v--~p~~~~~l~~~l~ 358 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV--LPPLFEALEAMLQ 358 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe--hHHHHHHHHHHhc
Confidence 1111111 111233344444332210 0122344566666644322221 1223556666777
Q ss_pred cCCcHHHHHHHHHHHHHhccCCCChhHHHh---cCcHHHHHHhccCCc-chHHHHHHHHHHhhCC--hhcHHHHhcCCCC
Q 014196 208 SGSSVETKELCIGALYNLSAVLDNARPMVS---NGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT--STGKKAMEDSPLV 281 (429)
Q Consensus 208 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~---~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~--~e~~~~i~~~~~i 281 (429)
+.+. .-|.+++.+|..++.. +...++ ..+++.++..|.|++ .++-.|+.+++.++.+ |+..+..-+ .+
T Consensus 359 S~~w-~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l 432 (1075)
T KOG2171|consen 359 STEW-KERHAALLALSVIAEG---CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RL 432 (1075)
T ss_pred CCCH-HHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hc
Confidence 7776 6788888888887753 322222 256777778888987 7777888899999873 555555443 46
Q ss_pred hHHHHHhcccCCChhHHHHHHHHHHHHhhCCH-HHHHHHHhCCchH-HHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 014196 282 PESLIEILTWEEKPKCQELSAYILMILAHQSS-EQRDKMAKSGIVH-VSLQLALLGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 282 ~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~-~~~~~i~~~G~v~-~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
++.|+..+....+++++.||+.+|.+...... +.-..-. .+.+. .|..+++++++.+|+.|+..+.-..+.-+
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 67899999856888999999999998875432 2111111 24455 55556677899999999999988887543
No 64
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.001 Score=72.70 Aligned_cols=174 Identities=12% Similarity=0.099 Sum_probs=114.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
++.+-..|++.++..|..|+.+|..++....+ .|.. ..+++..+..|++++|.||-+|+.+++.++.+-...-+.
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~---~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSD---VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH---HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 45566778899999999999999998865433 3322 346777788899999999999999999999875322222
Q ss_pred HHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 152 MVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
-...-.+|.|+..+.+.. ..++.+||.++.|++..... ..|. =.+.+..++.+|...++..+++.++.+|...+..
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 223445667888887665 57788889999999854332 2222 1233443344444444448999999999988864
Q ss_pred CCChhHHHhcCcHHHHHHhccCC
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
-+..-.=--.-.+|.|...|...
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNA 528 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCC
Confidence 33321111123456666666543
No 65
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0035 Score=59.48 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...++.+.+.+....+ -..|+.+|-+++. ++..|..+.+. .+..++.++..+....-+..+..|.||+..++....
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHH
Confidence 4456677777766544 4468899999986 45778777777 888899999887666777788999999998743333
Q ss_pred HHHh------cCccchhhhhccCCCH--HHHHHHHHHHHHhhccCCCccccccCCcHH--HHHHhhhcCCcHHHH-HHHH
Q 014196 151 IMVE------AGILTKLPKNVDAVDE--STRHEFGELLLSLSSLANTHIPLSSSEILP--FLVGILESGSSVETK-ELCI 219 (429)
Q Consensus 151 ~iv~------~G~i~~Lv~lL~~~~~--~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~~-~~A~ 219 (429)
.+.. .|.+.........+.. ..-.+.|.++.||+.....+..+.....+| .|+.+-. .++ .++ ...+
T Consensus 119 ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s-~vRr~Gva 196 (353)
T KOG2973|consen 119 LLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDS-QVRRGGVA 196 (353)
T ss_pred HHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cch-hhhccchH
Confidence 3321 3333333333333222 223456778999998887777766544222 2333323 333 344 4567
Q ss_pred HHHHHhccCCCChhHHHhc--CcHHHHHH---------------------hcc-----CCc-chHHHHHHHHHHhhCChh
Q 014196 220 GALYNLSAVLDNARPMVSN--GVVHTLLK---------------------LCS-----MKE-RLSEKSLATLGNLVVTST 270 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~--G~v~~Lv~---------------------lL~-----~~~-~~~~~a~~~L~~La~~~e 270 (429)
++|.|.|....+...+... ..+|.++- +|. +++ .++..-+.+|..||.+..
T Consensus 197 gtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~ 276 (353)
T KOG2973|consen 197 GTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA 276 (353)
T ss_pred HHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH
Confidence 8999999988888766653 33444432 121 123 677788899999999999
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHH
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
||+.+...|+-+ .+=++=.|..++++.+.+
T Consensus 277 GRe~lR~kgvYp-ilRElhk~e~ded~~~ac 306 (353)
T KOG2973|consen 277 GREVLRSKGVYP-ILRELHKWEEDEDIREAC 306 (353)
T ss_pred hHHHHHhcCchH-HHHHHhcCCCcHHHHHHH
Confidence 999999977653 444443445556655543
No 66
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.60 E-value=0.014 Score=58.30 Aligned_cols=269 Identities=15% Similarity=0.109 Sum_probs=171.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
.+...+-+++.+++..+.+.+|.+.. ++..-+.+.+.+.--.++..|..+ +..-+++|+..++.+..-. .+.. -.
T Consensus 29 ~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~-~~ 105 (371)
T PF14664_consen 29 RIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK-EI 105 (371)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc-cC
Confidence 33334445557777777777777765 556778888888666677777654 3455788988887775542 1211 12
Q ss_pred hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChh
Q 014196 154 EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNAR 233 (429)
Q Consensus 154 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~ 233 (429)
-.|.+..++.+.+..+...+..|..+|.+++..+ -..+..+|++..|++.+.++.. +..+..+.++..+-.++..+.
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~-~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF-SISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH-hHHHHHHHHHHHHhCCcchhh
Confidence 4566777899998888888888889999999643 2344589999999999988776 577888899999999998887
Q ss_pred HHHhcCcHHHHHHhccCC--------c--chHHHHHHHHHHhhCChhcHHHHhcCC-CChHHHHHhcccCCChhHHHHHH
Q 014196 234 PMVSNGVVHTLLKLCSMK--------E--RLSEKSLATLGNLVVTSTGKKAMEDSP-LVPESLIEILTWEEKPKCQELSA 302 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL~~~--------~--~~~~~a~~~L~~La~~~e~~~~i~~~~-~i~~~Lv~~L~~~~s~~~~e~A~ 302 (429)
.+...--+..++.-+.|. . +....+..++..+-++..|--.+...+ .....||+.|. .+++..++.-.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~-~p~~~ir~~Il 261 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR-LPNPEIRKAIL 261 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc-CCCHHHHHHHH
Confidence 665543344444443322 1 123344445555545554444443332 22346777776 56666666665
Q ss_pred HHHHHHhh---------------------C-------------------------C------HHHHHHHHhCCchHHHHH
Q 014196 303 YILMILAH---------------------Q-------------------------S------SEQRDKMAKSGIVHVSLQ 330 (429)
Q Consensus 303 ~~L~~L~~---------------------~-------------------------~------~~~~~~i~~~G~v~~L~~ 330 (429)
.++..+-. . + .-....++++|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 55544321 0 0 001234566788888888
Q ss_pred HhhcC-CHHHHHHHHHHHHHHH
Q 014196 331 LALLG-SPLAQRRASKLLQWFK 351 (429)
Q Consensus 331 ll~~~-~~~~k~~A~~lL~~l~ 351 (429)
+..+. ++....+|.-+|..+-
T Consensus 342 li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHH
Confidence 88775 6667777777665443
No 67
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.52 E-value=0.00018 Score=55.98 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=68.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc
Q 014196 116 IQMLVSMV-STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS 194 (429)
Q Consensus 116 i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 194 (429)
||.|+..| .++++.++..|+.+|.++. .. .+++.|..++++.+..+|..++.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----DP------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----HH------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CH------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 68899999 8889999999999998442 11 34788899998888999999988888763
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
+..+++.|.+++.+++...++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 44579999999988766456888888773
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.01 Score=62.05 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
++.-+.++..|.+.-+..+++|+..+..+.-.-|+ .|.+ +|.|+.-|+++|+.++.+|+..++.||..++.|-
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~------FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC------FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh------HHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 34456778888888899999999998887754443 3333 8999999999999999999999999998776431
Q ss_pred HH--------HHh-------------------------cCccchhhhhccCCC-HHHHHHHHHHHH--HhhccC-CCccc
Q 014196 150 AI--------MVE-------------------------AGILTKLPKNVDAVD-ESTRHEFGELLL--SLSSLA-NTHIP 192 (429)
Q Consensus 150 ~~--------iv~-------------------------~G~i~~Lv~lL~~~~-~~~~~~aa~~L~--~Ls~~~-~~~~~ 192 (429)
-. ++. ...+++|..++++.. .+...++..++- +++... ++...
T Consensus 217 L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as 296 (877)
T KOG1059|consen 217 LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS 296 (877)
T ss_pred ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH
Confidence 11 110 112333333333221 222223332221 111110 11111
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChh
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTST 270 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e 270 (429)
+ .-++.-|-.++.+.++ .+|.-++.|++.+.. |+..... --..++.+|.|.+ .++-+|+..|+.++. .+
T Consensus 297 i--qLCvqKLr~fiedsDq-NLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kk 367 (877)
T KOG1059|consen 297 I--QLCVQKLRIFIEDSDQ-NLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS-KK 367 (877)
T ss_pred H--HHHHHHHhhhhhcCCc-cHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh-hh
Confidence 1 1134555566667776 689889999988886 3332221 1245788999887 899999999998875 33
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh-CCchHHHHHHhhc-CCHHHHHHHHHHHH
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK-SGIVHVSLQLALL-GSPLAQRRASKLLQ 348 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~-~G~v~~L~~ll~~-~~~~~k~~A~~lL~ 348 (429)
+-.+|++ .|+..+.......-+..-+.-+..+|+.+ +-+-+.+ +=-+..|+++..- |+.+...-|..++.
T Consensus 368 Nl~eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~D 439 (877)
T KOG1059|consen 368 NLMEIVK------TLMKHVEKAEGTNYRDELLTRIISICSQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIID 439 (877)
T ss_pred hHHHHHH------HHHHHHHhccchhHHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 4444544 45544432222233434444445567643 2222333 2245666666654 45555555554443
Q ss_pred HH
Q 014196 349 WF 350 (429)
Q Consensus 349 ~l 350 (429)
..
T Consensus 440 v~ 441 (877)
T KOG1059|consen 440 VA 441 (877)
T ss_pred Hh
Confidence 33
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0071 Score=65.53 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhhchHHHHHHHh----cCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhh
Q 014196 90 EMAAKEIEKLAKEDVKIKKLMAE----LGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKN 164 (429)
Q Consensus 90 ~~Aa~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~l 164 (429)
.-++.+|+++.+.+|+....+.. .|-.+.+...|.. .++.++.-|+..+..+.... +.-..+++.|.+..|+.+
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHH
Confidence 34788999999888865554443 4667778888875 57899999999987777665 578889999998888888
Q ss_pred ccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 165 VDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
|.+. ++.|+.+..+|+.|++..+....-...|++..+..++-..+..+.+.+++..|..|.
T Consensus 1822 LHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1822 LHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 8654 567888888999998776554444466666666655544333344444444444443
No 70
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.43 E-value=0.0014 Score=60.95 Aligned_cols=179 Identities=18% Similarity=0.170 Sum_probs=108.2
Q ss_pred cCCCHHHHHHHHHHHHHHhhhc--hHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCc
Q 014196 82 HFGSWEEKEMAAKEIEKLAKED--VKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGI 157 (429)
Q Consensus 82 ~~~~~~~~~~Aa~~L~~La~~~--~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~ 157 (429)
.+.+++.+.+|+..|+.+.+.+ ......+.+ ...+..++..+.+....+...|+.++..++.... +.-.-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~-~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG-SHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG-GGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHH
Confidence 4568999999999999998876 333444433 1456777778877777888899999999887642 2221112356
Q ss_pred cchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCc-HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-ChhHH
Q 014196 158 LTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEI-LPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPM 235 (429)
Q Consensus 158 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i 235 (429)
+|.|+..+.+.....++.|..+|..+........ .. ++.+...+.+.++ .++..++..|..+..... +...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn~-~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKNP-QVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-H-HHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHccchHhhh
Confidence 7888888887777777878888888885433111 12 5666666777776 789999988888765332 22222
Q ss_pred Hh----cCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 236 VS----NGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 236 v~----~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
-. ...++.+..++.|.+ ++++.|-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 22 346777788888886 888888888877755
No 71
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.38 E-value=0.00076 Score=54.08 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHhccCCCchHHHHHhc
Q 014196 88 EKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS--TEVIGRRRAAIKALIQLANGTYTNKAIMVEA 155 (429)
Q Consensus 88 ~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~ 155 (429)
.|...+..|.+++.+++.+...+++.|+||.++++-. ..+|-++|.|++++.||+.++++|+..|.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3566788899999999999999999999999999764 4579999999999999999998898888763
No 72
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0087 Score=59.34 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=164.1
Q ss_pred HHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC-----Cch----HHHHHhcCccchhh
Q 014196 92 AAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT-----YTN----KAIMVEAGILTKLP 162 (429)
Q Consensus 92 Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-----~~n----k~~iv~~G~i~~Lv 162 (429)
.+..+.-+|. -|..--.+++.++++.|+.+|...+.++-.+.+..|..|.-.+ ++. -..+++.+.++.|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 3444444553 5667678999999999999999999999999898888886332 111 34556778999999
Q ss_pred hhccCCCHHHHHHH------HHHHHHhhccC-CCccccccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHHhccC-CCChh
Q 014196 163 KNVDAVDESTRHEF------GELLLSLSSLA-NTHIPLSSSEILPFLVGILES-GSSVETKELCIGALYNLSAV-LDNAR 233 (429)
Q Consensus 163 ~lL~~~~~~~~~~a------a~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~-~~n~~ 233 (429)
..++..+...++++ ...+.|+.... .....+++.|.+.-|+.-+.. .....-+..|...|.-+-.+ .+|+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 99987776666554 34556665443 344445566776666653332 22224577788888776654 44888
Q ss_pred HHHhcCcHHHHHHhcc-----CC---c--chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 234 PMVSNGVVHTLLKLCS-----MK---E--RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL~-----~~---~--~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
....-.++..++.-+. |+ + ++.++-...|+.+...+++|..+....|+ .|..++.+ .....+..+..
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGl--qLm~Lmlr-~Kk~sr~Salk 339 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGL--QLMNLMLR-EKKVSRGSALK 339 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccH--HHHHHHHH-HHHHhhhhHHH
Confidence 8888899999988764 32 1 56667777777777789999999997776 47776653 35556777888
Q ss_pred HHHHHhhCCH--HHHHHHHhCCchHHHHHHh
Q 014196 304 ILMILAHQSS--EQRDKMAKSGIVHVSLQLA 332 (429)
Q Consensus 304 ~L~~L~~~~~--~~~~~i~~~G~v~~L~~ll 332 (429)
+|-....+.+ .++...++.++...+..+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 8887666543 6888888876666665543
No 73
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.37 E-value=0.00047 Score=53.62 Aligned_cols=85 Identities=24% Similarity=0.245 Sum_probs=64.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 74 LQKSVKRL-HFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 74 l~~lv~~L-~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
|+.|++.| .++++.+|..|+..|..+.. + .+++.|+.+++++|+.++..|+++|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889999 77789999999988885432 1 34899999999999999999999998773
Q ss_pred HhcCccchhhhhccCCC-HHHHHHHHHHH
Q 014196 153 VEAGILTKLPKNVDAVD-ESTRHEFGELL 180 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~-~~~~~~aa~~L 180 (429)
+..+++.|..++.+.+ ...+..|+.+|
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2236777888887655 44466666665
No 74
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.36 E-value=0.0043 Score=61.16 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=154.1
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCchHHHHHhc
Q 014196 79 KRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST--EVIGRRRAAIKALIQLANGTYTNKAIMVEA 155 (429)
Q Consensus 79 ~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~ 155 (429)
..+++ .+.++..-|+..|..+.+.+ +.|..++.+.++..|+..|.+ .+..+|-..+-+++-|+++. .-.+.+..-
T Consensus 163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~-~~ae~~~~~ 240 (442)
T KOG2759|consen 163 EQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP-HAAEKLKRF 240 (442)
T ss_pred HHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH-HHHHHHhhc
Confidence 33444 35667777888999998865 789999999999999999954 35788888999999999986 456666667
Q ss_pred CccchhhhhccCCC-HHHHHHHHHHHHHhhccCC---Cccccc---cCCcHHHHHHhhhcC--CcHHHHHHH-------H
Q 014196 156 GILTKLPKNVDAVD-ESTRHEFGELLLSLSSLAN---THIPLS---SSEILPFLVGILESG--SSVETKELC-------I 219 (429)
Q Consensus 156 G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~---~~~~i~---~~g~i~~Lv~lL~~~--~~~~~~~~A-------~ 219 (429)
+.|+.|..++.... ..+.+.+.+++.|+....+ .+..+. -.+.++.-++.|... +.+++..+. -
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 88999999986443 4455667788888875542 222221 234455566666542 111222111 1
Q ss_pred HHHHHhccCC------------------------CChhHHHhc--CcHHHHHHhccCC-c-chHHHHHHHHHHhhC-Chh
Q 014196 220 GALYNLSAVL------------------------DNARPMVSN--GVVHTLLKLCSMK-E-RLSEKSLATLGNLVV-TST 270 (429)
Q Consensus 220 ~aL~nLs~~~------------------------~n~~~iv~~--G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~-~~e 270 (429)
.-...||+.+ +|..++-+. ..+..|+.+|..+ + .+..-|+.=+..... .|+
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch
Confidence 1112222221 455555554 6788899999754 2 444455555666666 799
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
|+..+.+.||=. .++++|+ +.+++++-+|+.++-.+-
T Consensus 401 gk~vv~k~ggKe-~vM~Lln-h~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 401 GKAVVEKYGGKE-RVMNLLN-HEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HhHHHHHhchHH-HHHHHhc-CCCchHHHHHHHHHHHHH
Confidence 999999988874 8999999 899999999988876654
No 75
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0093 Score=61.91 Aligned_cols=270 Identities=16% Similarity=0.095 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHH--HHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKL--MAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY 146 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~--i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 146 (429)
+..+|.|...|.+++...+..|..+|..++.++++.-+. .-+ .-.+|.++.+.+++++.+|..|+.++-..-...
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence 456899999999988888889999999999876542211 101 235889999999999999999999886655542
Q ss_pred chHHHHHh-cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 147 TNKAIMVE-AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 147 ~nk~~iv~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
+...++. ...++.+..+-...++++|.+.+.+|..|-.... ..+. -.+.|..++...++.+. .+--.|+.-..
T Consensus 206 -~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--dkl~phl~~IveyML~~tqd~dE-~VALEACEFwl 281 (885)
T KOG2023|consen 206 -TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVEYMLQRTQDVDE-NVALEACEFWL 281 (885)
T ss_pred -cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHHHHHHHccCcch-hHHHHHHHHHH
Confidence 3444443 2355556666667779999998887776653221 1222 24567777777777665 56667888888
Q ss_pred HhccCCCChhHHHh--cCcHHHHHHhcc----------CCc---------------------------------------
Q 014196 224 NLSAVLDNARPMVS--NGVVHTLLKLCS----------MKE--------------------------------------- 252 (429)
Q Consensus 224 nLs~~~~n~~~iv~--~G~v~~Lv~lL~----------~~~--------------------------------------- 252 (429)
.++..+--+..+.. ...||.|+.=+. +.+
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 88887733333332 256677664332 000
Q ss_pred --------chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC--
Q 014196 253 --------RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKS-- 322 (429)
Q Consensus 253 --------~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~-- 322 (429)
.+++-.+++|.-|+.. -+..+.. .+.|.|-+.|. +..=..+|.++-+|+.++.+ ..+-++..
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanv--f~~elL~--~l~PlLk~~L~-~~~W~vrEagvLAlGAIAEG---cM~g~~p~Lp 433 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANV--FGDELLP--ILLPLLKEHLS-SEEWKVREAGVLALGAIAEG---CMQGFVPHLP 433 (885)
T ss_pred cccccccccHhhccHHHHHHHHHh--hHHHHHH--HHHHHHHHHcC-cchhhhhhhhHHHHHHHHHH---HhhhcccchH
Confidence 1122223333333220 0111211 12234445555 45556899999999999864 33333332
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 323 GIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 323 G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
..+|.|+.++.+..+.+|.-.+|.|..++..
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 3789999999999999999999999888863
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.33 E-value=0.023 Score=57.47 Aligned_cols=190 Identities=16% Similarity=0.111 Sum_probs=125.1
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 115 VIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 115 ~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
+++.|+..|. .++.++...++.+|. ...+. . ++..|+..+...+..++..++.+|.. +
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~-~--------~~~~L~~~L~d~~~~vr~aaa~ALg~----------i 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDA-L--------DLRSVLAVLQAGPEGLCAGIQAALGW----------L 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh-H--------HHHHHHHHhcCCCHHHHHHHHHHHhc----------C
Confidence 4788899994 566777776665553 22221 1 25667888888777788888887763 4
Q ss_pred ccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcH
Q 014196 194 SSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGK 272 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~ 272 (429)
...++.+.|+.+|.+.++ .++..++.++.. ......+.++.+|++.+ .+...|+.+|..+-..
T Consensus 114 ~~~~a~~~L~~~L~~~~p-~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---- 177 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEP-PGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR---- 177 (410)
T ss_pred CchHHHHHHHHHhcCCCh-HHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----
Confidence 456678999999988887 688777766655 11335678999998876 8888999999876431
Q ss_pred HHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHH------------------HHHhC----CchHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRD------------------KMAKS----GIVHVSLQ 330 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~------------------~i~~~----G~v~~L~~ 330 (429)
..+ +.|...+. +.++.++..|+..|..+.. ++... .+... .+++.|..
T Consensus 178 ------~a~-~~L~~al~-d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 178 ------LSE-STLRLYLR-DSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred ------cch-HHHHHHHc-CCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 233 36777777 7888899888888765521 21111 11111 24445555
Q ss_pred HhhcCCHHHHHHHHHHHHHHHhc
Q 014196 331 LALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 331 ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
++++. .++..+.+.|..+.+.
T Consensus 248 ll~d~--~vr~~a~~AlG~lg~p 268 (410)
T TIGR02270 248 LLQAA--ATRREALRAVGLVGDV 268 (410)
T ss_pred HhcCh--hhHHHHHHHHHHcCCc
Confidence 55543 3677777777766653
No 77
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.33 E-value=0.037 Score=56.85 Aligned_cols=229 Identities=18% Similarity=0.195 Sum_probs=150.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCCCchHHHHH-hcC
Q 014196 83 FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-----VIGRRRAAIKALIQLANGTYTNKAIMV-EAG 156 (429)
Q Consensus 83 ~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G 156 (429)
..+.....+|++.|.|+...++..|+.+++.|..+.++..|+.. +.++.-.....|.-+.......+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34678889999999999999999999999999999999999886 677887788888777665444565555 557
Q ss_pred ccchhhhhccC----C-------------CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC--------Cc
Q 014196 157 ILTKLPKNVDA----V-------------DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG--------SS 211 (429)
Q Consensus 157 ~i~~Lv~lL~~----~-------------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~ 211 (429)
++..+...|.. . +.....++..+++|+..+......-...+.++.|+.++..- ..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 77777665531 0 11223345568888876543322212456677777776532 11
Q ss_pred HHHHHHHHHHHHHhccCC-CC-------h----hHHHhcCcHHHHHHhccCC---------cchHHHHHHHHHHhhCC-h
Q 014196 212 VETKELCIGALYNLSAVL-DN-------A----RPMVSNGVVHTLLKLCSMK---------ERLSEKSLATLGNLVVT-S 269 (429)
Q Consensus 212 ~~~~~~A~~aL~nLs~~~-~n-------~----~~iv~~G~v~~Lv~lL~~~---------~~~~~~a~~~L~~La~~-~ 269 (429)
.....+++.+|.|+-... .. . ..-.....+..|+.+|... ++...-.+.+|.+++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 246677888888873210 00 0 1112234566777776521 13444556666677663 4
Q ss_pred hcHHHHhc---------------CCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC
Q 014196 270 TGKKAMED---------------SPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312 (429)
Q Consensus 270 e~~~~i~~---------------~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~ 312 (429)
..|+.+.. .+.+...|++++. +..+..+..+...|+.||..+
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt-~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT-SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC-CCCchHHHHHHHHHHHHHhhh
Confidence 55555443 3566678999998 555889999999999999654
No 78
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.31 E-value=0.016 Score=59.53 Aligned_cols=259 Identities=17% Similarity=0.148 Sum_probs=160.8
Q ss_pred HHHHHHHhhhchHHHHHHHhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhh
Q 014196 93 AKEIEKLAKEDVKIKKLMAELGVIQMLVSMV----------STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLP 162 (429)
Q Consensus 93 a~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL----------~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv 162 (429)
+.+||.+++ ++.+...+....++..|...- ...+..+...|+.+|.|+-+.++..|+..++.|..+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 456676765 344555555555566665543 345788999999999999999877798999999999999
Q ss_pred hhccCC-----CHHHHHHHHHHHHHhhccC-CCccccc-cCCcHHHHHHhhhc---------C-------CcHHHHHHHH
Q 014196 163 KNVDAV-----DESTRHEFGELLLSLSSLA-NTHIPLS-SSEILPFLVGILES---------G-------SSVETKELCI 219 (429)
Q Consensus 163 ~lL~~~-----~~~~~~~aa~~L~~Ls~~~-~~~~~i~-~~g~i~~Lv~lL~~---------~-------~~~~~~~~A~ 219 (429)
..|... ..+..-....+|+-++... +.+..+. +.+++..++..|.. . ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999765 4555555667777666543 4444444 56778877776642 0 1223456789
Q ss_pred HHHHHhccCCCChhHHHhcCcHHHHHHhccC-------C---cchHHHHHHHHHHhhC-Chhc-------HHHHh---cC
Q 014196 220 GALYNLSAVLDNARPMVSNGVVHTLLKLCSM-------K---ERLSEKSLATLGNLVV-TSTG-------KKAME---DS 278 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-------~---~~~~~~a~~~L~~La~-~~e~-------~~~i~---~~ 278 (429)
.+++|+..+......--+.+.++.|+.++.+ . +...-.++.+|.|+-. +.+. ...+. ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998765444322345666666665431 1 2566677777777632 1111 00010 11
Q ss_pred CCChHHHHHhccc----CC---ChhHHHHHHHHHHHHhhCCHHHHHHHHh----------------CCchHHHHHHhhcC
Q 014196 279 PLVPESLIEILTW----EE---KPKCQELSAYILMILAHQSSEQRDKMAK----------------SGIVHVSLQLALLG 335 (429)
Q Consensus 279 ~~i~~~Lv~~L~~----~~---s~~~~e~A~~~L~~L~~~~~~~~~~i~~----------------~G~v~~L~~ll~~~ 335 (429)
...+..|+++|.. .. -...-..-+.+|..+|..+...|+.+.. ...-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 1123356666542 11 1123345566777777766666666654 23566788888887
Q ss_pred CHHHHHHHHHHHHHHHh
Q 014196 336 SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 336 ~~~~k~~A~~lL~~l~~ 352 (429)
.+..|..++.+|-.+.+
T Consensus 321 ~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCK 337 (446)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 78889888887755553
No 79
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.01 Score=60.59 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=158.8
Q ss_pred chhhHHHHHHHHHhh-cccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh---hchHHHHHHHhcCc
Q 014196 40 SRTLKNINCQEEKQV-IIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAK---EDVKIKKLMAELGV 115 (429)
Q Consensus 40 N~~Lr~lI~~W~~~~-~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~---~~~~~r~~i~~~G~ 115 (429)
|-.-|..+-.|-.-. +++++..- .--...+..|...|..++.+++.-+=..+..+-. .+|.. +--...
T Consensus 180 n~~tR~flv~Wl~~Lds~P~~~m~-----~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~ 251 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPDLEMI-----SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDM 251 (675)
T ss_pred CchHHHHHHHHHHHHhcCCcHHHH-----hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccc
Confidence 445677778887543 11111000 0113456778888888888777444333333221 12221 122356
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCH-HHHHHHHH---HHHHhhccCCCcc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDE-STRHEFGE---LLLSLSSLANTHI 191 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~-~~~~~aa~---~L~~Ls~~~~~~~ 191 (429)
++.||.-+.++++.+|..|+.-+.....-.. +.....-.|.+..+..++...+. ..++.+.. .|..+......+.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~ 330 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKE 330 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcc
Confidence 8899999999999999999877776655431 22333345666666777765443 34443332 3555554444444
Q ss_pred ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChh
Q 014196 192 PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTST 270 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e 270 (429)
.|.-...+..|.+.+.++.. +.|-.++..+..|-....|.........++.|+.-|+|++ +++..++.+|.++|.+++
T Consensus 331 ~id~~~ii~vl~~~l~~~~~-~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 331 EIDYGSIIEVLTKYLSDDRE-ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred ccchHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 44334467788888877775 7898899888888776667766677799999999999885 999999999999999765
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
....+ + .. ..|+++.. ....-....+.-++..+|.
T Consensus 410 ~~~~~-~--fl-~sLL~~f~-e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 410 SPNLR-K--FL-LSLLEMFK-EDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred cccHH-H--HH-HHHHHHHh-hhhHHHHhhhhHHHHHHHH
Confidence 44211 0 01 13444444 3444455667777777775
No 80
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0029 Score=65.41 Aligned_cols=254 Identities=13% Similarity=0.068 Sum_probs=155.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC------
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT------ 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~------ 145 (429)
..+..+......++..++..|+..|-.|.... +.-+.+ ....+..+.+++.+++.+|+.++.-++...
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~~-----Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKAC-----YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHHH-----HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34445777777888888999999888887522 322332 345688999999999999966655543221
Q ss_pred CchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCC--cHHHHHHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGS--SVETKELCIGALY 223 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~~A~~aL~ 223 (429)
+.+...+.+ .++..+...++..+..+|-.|+.+|..+.... ..|. -..|-+-+.+.. .....+.......
T Consensus 272 e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS---ee~i----~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 272 ESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS---EEII----QQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred hhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhH---HHHH----HHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 112222222 35566677777777777777877776665322 1110 011111000000 0001111111111
Q ss_pred Hh--cc------------CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHH
Q 014196 224 NL--SA------------VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIE 287 (429)
Q Consensus 224 nL--s~------------~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~ 287 (429)
+. +. .++.-.-++..|+..+++.=|.|.= ++++.|++.++.|+.+ |.-...-. .-||+
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~al------dfLvD 417 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRAL------DFLVD 417 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHH------HHHHH
Confidence 11 00 1122345788899999998887753 8999999999999874 44333222 37999
Q ss_pred hcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 288 ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 288 ~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
+++ +.-..++..|+.+|..|+.+ ..+++.-++.++..+.+.+.++++....+|++.+-
T Consensus 418 MfN-DE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 418 MFN-DEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 998 77888999999999988764 33344457777888888888888888877777664
No 81
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.14 E-value=0.06 Score=53.02 Aligned_cols=185 Identities=19% Similarity=0.178 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..+..+++.+.+.+...+..|+..+..+.. .-+++.|..+|.+.++.++..|+.+|..+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-------
Confidence 457788888888888888888887555432 22489999999999999999999988665322
Q ss_pred HHhcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcH-----------HHHHHHH
Q 014196 152 MVEAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSV-----------ETKELCI 219 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-----------~~~~~A~ 219 (429)
.+++.|+.++. +.+..+|..++.+|..+-. ..++.+|+.++.+.... ..+..+.
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 23566778787 4777888888888887662 23477888888775521 1233333
Q ss_pred HHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHH
Q 014196 220 GALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQ 298 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~ 298 (429)
.+|..+ -+...++.+...+.+.. .++..+...|..+.... ..+.+.+...+. +.+...+
T Consensus 171 ~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~-~~~~~vr 230 (335)
T COG1413 171 EALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALS-DESLEVR 230 (335)
T ss_pred HHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhc-CCCHHHH
Confidence 333322 22346778888888775 78888888888776543 223336777776 6777777
Q ss_pred HHHHHHHHHH
Q 014196 299 ELSAYILMIL 308 (429)
Q Consensus 299 e~A~~~L~~L 308 (429)
..++.+|..+
T Consensus 231 ~~~~~~l~~~ 240 (335)
T COG1413 231 KAALLALGEI 240 (335)
T ss_pred HHHHHHhccc
Confidence 7776666554
No 82
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.98 E-value=0.0081 Score=55.71 Aligned_cols=179 Identities=17% Similarity=0.103 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHhhccC---CCcccccc--CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcH
Q 014196 167 AVDESTRHEFGELLLSLSSLA---NTHIPLSS--SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVV 241 (429)
Q Consensus 167 ~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v 241 (429)
+.+.+.|.++..-|..+.... +....+.. ...+..+...+.+..+ .+...|+.++..|+..-.+.-.-.-...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs-~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS-KVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 445667777777777776544 12222211 1344556666655554 57778999999998754443222234678
Q ss_pred HHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH---H-HH
Q 014196 242 HTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS---E-QR 316 (429)
Q Consensus 242 ~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~---~-~~ 316 (429)
|.|+..+.+.. -+.+.|..+|..++.+-..-..+. .+.+...+. +.++..+..++..|..+....+ . ..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLK-SKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999998875 778888888988887433111111 224555566 7889999999988887765433 1 11
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 317 DKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 317 ~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
....-..+++.+..++.++++.+|+.|..++..+..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 111113467888889999999999999998877765
No 83
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.97 E-value=0.017 Score=50.19 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=96.7
Q ss_pred ccccCCcHHHHHHhhhcCCc-----HHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC--c-chHHHHHHHHH
Q 014196 192 PLSSSEILPFLVGILESGSS-----VETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK--E-RLSEKSLATLG 263 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~~~~-----~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~--~-~~~~~a~~~L~ 263 (429)
.+.+.|++..|++++.++.. ......++.++..|-.|.-.-...++.-.|..++..+... + .+.+.|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 34467899999999999873 2456778899999988876667788888888888887643 3 88999999999
Q ss_pred HhhCChhc-HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHH
Q 014196 264 NLVVTSTG-KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMA 320 (429)
Q Consensus 264 ~La~~~e~-~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~ 320 (429)
+++.+... ...+.+ +--.+.|+..|. ..++..|.+|+..+..|..+ ++.-|+.+.
T Consensus 86 s~Vl~S~~ly~~V~~-evt~~~Li~hLq-~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQ-EVTLESLIRHLQ-VSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHhCCHHHHHHHhc-cCCHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99986544 555555 444568999998 68889999999988888764 344555443
No 84
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.93 E-value=0.0022 Score=41.99 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 313 ~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
++.+..+++.|+++.|+.++.++++++++.|.|.|+++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999889999999999999875
No 85
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.90 E-value=0.038 Score=54.37 Aligned_cols=186 Identities=22% Similarity=0.212 Sum_probs=126.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
-.++.++..+.+.+..++..|+..|..+.. .-+++.+..++...+...|..++.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 458889999999999999999888544321 224667788888888888888777555433
Q ss_pred ccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-c------------hHHHHH
Q 014196 194 SSSEILPFLVGILES-GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-R------------LSEKSL 259 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~------------~~~~a~ 259 (429)
...+++.|++++.. .+. .++..|..+|..+-.. .++.+++..+.+.. . ++..+.
T Consensus 103 -~~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 103 -DPEAVPPLVELLENDENE-GVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -ChhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 34578999999995 555 7899999998876532 23778888887653 1 122222
Q ss_pred HHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHH
Q 014196 260 ATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLA 339 (429)
Q Consensus 260 ~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~ 339 (429)
..|..+ .. +..++.+.+.+. .....++..|..+|..+...+ ..+.+.+...+...+..+
T Consensus 171 ~~l~~~----------~~-~~~~~~l~~~l~-~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 171 EALGEL----------GD-PEAIPLLIELLE-DEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHc----------CC-hhhhHHHHHHHh-CchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 222221 11 223347888887 677788999999888876543 345567777777777777
Q ss_pred HHHHHHHHHHHHh
Q 014196 340 QRRASKLLQWFKD 352 (429)
Q Consensus 340 k~~A~~lL~~l~~ 352 (429)
+.++...|..+..
T Consensus 230 r~~~~~~l~~~~~ 242 (335)
T COG1413 230 RKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHhcccCc
Confidence 7777776666554
No 86
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.15 Score=54.37 Aligned_cols=253 Identities=15% Similarity=0.150 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.++..|...+.|++.++..+++|+....++-+..|+.-..+ +++-..+|.+.+..+...++..+..++..+.++-
T Consensus 140 ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 140 ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH
Confidence 45566777777888888888888777776666555433322 2222333333333333333333333332211110
Q ss_pred HHHHh-----------------------cCccc--------hhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCc
Q 014196 150 AIMVE-----------------------AGILT--------KLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEI 198 (429)
Q Consensus 150 ~~iv~-----------------------~G~i~--------~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~ 198 (429)
...-+ +|.-+ .+.++|...+.+..+....+|..++.+.+...-++.+-.
T Consensus 215 ~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 215 SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 00000 11111 122333444444444444555555544433333332211
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-ChhHHH----------hcCcH----HHHHHhccCCc-chHHHHHHHH
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMV----------SNGVV----HTLLKLCSMKE-RLSEKSLATL 262 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv----------~~G~v----~~Lv~lL~~~~-~~~~~a~~~L 262 (429)
.+..-.++.-.+...++.-|+.+|...-.+++ |...+. +..+| ..++++|+|+| .++++|+..+
T Consensus 295 YE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 295 YECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 12222222212222566677777776554433 322221 11223 24788999998 8999999999
Q ss_pred HHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh-CCHHH------H-HHHHhCC------chHHH
Q 014196 263 GNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH-QSSEQ------R-DKMAKSG------IVHVS 328 (429)
Q Consensus 263 ~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~-~~~~~------~-~~i~~~G------~v~~L 328 (429)
..|.... +-..|++ -|+++|. ..++..+...++-+..++. +.|+. . ..+..+| ++..|
T Consensus 375 ~~lvn~~-Nv~~mv~------eLl~fL~-~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nl 446 (866)
T KOG1062|consen 375 YALVNES-NVRVMVK------ELLEFLE-SSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNL 446 (866)
T ss_pred HHHhccc-cHHHHHH------HHHHHHH-hccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHH
Confidence 9887643 3344443 4778887 4567777777666666664 33321 1 2222234 77778
Q ss_pred HHHhhcC
Q 014196 329 LQLALLG 335 (429)
Q Consensus 329 ~~ll~~~ 335 (429)
+.++.++
T Consensus 447 l~LIa~~ 453 (866)
T KOG1062|consen 447 LRLIANA 453 (866)
T ss_pred HHHHhcC
Confidence 8887776
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.013 Score=59.52 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=135.3
Q ss_pred HHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccccccCCcHHHHHHhhhcCCcHH
Q 014196 135 IKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLVGILESGSSVE 213 (429)
Q Consensus 135 ~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 213 (429)
+..|..++..-.--|..+.+...+++|+++|..++.-..-.+...++|+-.- ...+..+...|.|..|+.++.+.+. .
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd-a 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD-A 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh-h
Confidence 3344444444322367777888899999999876644433445566666532 2445566689999999999998876 7
Q ss_pred HHHHHHHHHHHhccCCC-C-hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC----hhcHHHHhcC---CCChH
Q 014196 214 TKELCIGALYNLSAVLD-N-ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT----STGKKAMEDS---PLVPE 283 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~-n-~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~----~e~~~~i~~~---~~i~~ 283 (429)
++.+..|.|+++--+.. + +-..+..-++..++++..|+. .+++.++.+|.|+..+ ++.+...... .-...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 89999999999986443 3 345566677899999999987 9999999999999762 1122211111 11123
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh-CCchHHHHHHhh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK-SGIVHVSLQLAL 333 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~-~G~v~~L~~ll~ 333 (429)
.|++.++ ..+|-..+..+++|.++++.+++.+..+.+ ...+..+.+.+.
T Consensus 569 ~l~~k~e-~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 569 RLIDKYE-ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHH-hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 4666666 677777788899999999887777777776 345555555543
No 88
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.058 Score=57.01 Aligned_cols=296 Identities=11% Similarity=0.128 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHHHh---h---hchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCcc
Q 014196 85 SWEEKEMAAKEIEKLA---K---EDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La---~---~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i 158 (429)
+..+|..|..+|.+-. + .++..|..| ....+..-.++|.+++.+|..+|..|..-..+.-..-.+...+
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf 261 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF 261 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776532 1 112233332 3445666678899999999999988875432222222222233
Q ss_pred chhhhhccCCCHHHHHHHHHHHHHhhcc------------CCCccc----cc---cCCcHHHHHHhhhcC------CcHH
Q 014196 159 TKLPKNVDAVDESTRHEFGELLLSLSSL------------ANTHIP----LS---SSEILPFLVGILESG------SSVE 213 (429)
Q Consensus 159 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~------------~~~~~~----i~---~~g~i~~Lv~lL~~~------~~~~ 213 (429)
..-+.-+.+.+.++.-.+...-.+++.- +.+.++ +. -.+.+|.|+++|... |...
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 3333444555555544444333334321 112221 11 246788899988752 1112
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhc----cCCc-chHHHHHHHHHHhhCCh--hcHHHHhcCCCChHHHH
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC----SMKE-RLSEKSLATLGNLVVTS--TGKKAMEDSPLVPESLI 286 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL----~~~~-~~~~~a~~~L~~La~~~--e~~~~i~~~~~i~~~Lv 286 (429)
.-+.|-.+|.-++.. +...+||+++.++ +.++ ..++.++.+++.+-..| .....++. ++++ .++
T Consensus 342 p~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~-qalp-~ii 412 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI-QALP-SII 412 (859)
T ss_pred HHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh-hhhH-HHH
Confidence 334455555544432 3334555655554 4556 77888888888776644 44555665 5664 999
Q ss_pred HhcccCCChhHHHHHHHHHHHHhhCCHHHHH-HHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-c-cCCCCCC-
Q 014196 287 EILTWEEKPKCQELSAYILMILAHQSSEQRD-KMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER-Q-AKMGPHS- 362 (429)
Q Consensus 287 ~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~-~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~-~-~~~~~~~- 362 (429)
.++. +.+-.+++.+.+.|+.+|.+-++.+. .....+.++.|+.=+. ..|++-.+++|.+-.|.+.- + .++. +.
T Consensus 413 ~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~-~qt 489 (859)
T KOG1241|consen 413 NLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSN-GQT 489 (859)
T ss_pred HHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCC-CCC
Confidence 9998 78888999999999999986553221 1111233333333222 37889999999988888642 2 1111 11
Q ss_pred ---CCCcccc-c-----cCCCC--ChhhhHHHHHHHHHHHHHHHHH
Q 014196 363 ---GPQTRRV-S-----IGSPV--SPREAQEGKKMMKNLVQQSLHK 397 (429)
Q Consensus 363 ---~~~~~~~-~-----~~~~~--~~~~~~~~k~~l~~~~~~~~~~ 397 (429)
-|.++.+ . .+..+ .-.+|..+=.||-+||+.|++-
T Consensus 490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 1223322 1 11222 4567788888888888766654
No 89
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.17 Score=55.45 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-hccCCCchHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQ-LANGTYTNKA 150 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~n-La~~~~~nk~ 150 (429)
+.+|-.++-|-+ .--+..|+.-|.++..-.+=.-..-..-|+.|-.+.+|+++-.+++---+-+=.. ||.+. ..+.
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~-SCQ~ 548 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP-SCQA 548 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc-hhHH
Confidence 445555555544 2334456666665554444333444567999999999999988876543333222 56664 5788
Q ss_pred HHHhcCccchhhhhccCCC---HHHHHHHHHHHHHhhccCC-CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 151 IMVEAGILTKLPKNVDAVD---ESTRHEFGELLLSLSSLAN-THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~---~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
.+++.++-...+..|.... .+-|..+|-+|..+..+-. .+...-+.+.|..-...|.++..+-++.-++-+|..|=
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 8888877777777776522 4556666677887774421 22233356777777778877533357888888888885
Q ss_pred c-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 227 A-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 227 ~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
. .++++..=++.++...|+.+|+|+- +++..|+.+|..+..
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 4 6777777788999999999999985 888889999987665
No 90
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.028 Score=58.09 Aligned_cols=227 Identities=18% Similarity=0.196 Sum_probs=135.3
Q ss_pred cCcHHHHHHhhc---CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCC
Q 014196 113 LGVIQMLVSMVS---TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANT 189 (429)
Q Consensus 113 ~G~i~~Lv~lL~---s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~ 189 (429)
.+.+|.|..+|. +..+.+|++|..+...+...-...... -.+|.++.-+.......+..++..|..++...+.
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 344555555544 345677777766554443221111111 1122222222222345666777788877755444
Q ss_pred ccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCCh
Q 014196 190 HIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTS 269 (429)
Q Consensus 190 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~ 269 (429)
.-...-...||.|.+.|.+..+ ++++.+..+|.+++..-+|.... -.+|.|++.+.++.....+|+..|..-.--
T Consensus 288 qLs~~lp~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV- 362 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCYTPECLDSLGATTFV- 362 (569)
T ss_pred HHHHHHhHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccchHHHHHhhcceeee-
Confidence 3344457789999999998887 89999999999999877776522 257889999998864666666655432110
Q ss_pred hcHHHHhcCCCChHHHHHhccc---CCChhHHHHHHHHHHHHhhC--CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHH
Q 014196 270 TGKKAMEDSPLVPESLIEILTW---EEKPKCQELSAYILMILAHQ--SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRAS 344 (429)
Q Consensus 270 e~~~~i~~~~~i~~~Lv~~L~~---~~s~~~~e~A~~~L~~L~~~--~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~ 344 (429)
+.+....+ ..+|.+|.+ ..+...+..++.+.+|+|.- ++......+. -.+|.|-..+...-|++|.-|+
T Consensus 363 ----~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaa 436 (569)
T KOG1242|consen 363 ----AEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAA 436 (569)
T ss_pred ----eeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHH
Confidence 11222332 244444432 35566678899999999973 3332222221 2567777777766789999999
Q ss_pred HHH-HHHHhcc
Q 014196 345 KLL-QWFKDER 354 (429)
Q Consensus 345 ~lL-~~l~~~~ 354 (429)
+.| ..+.+-+
T Consensus 437 rAL~~l~e~~g 447 (569)
T KOG1242|consen 437 RALGALLERLG 447 (569)
T ss_pred HHHHHHHHHHH
Confidence 887 4444433
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.77 E-value=0.003 Score=44.63 Aligned_cols=55 Identities=20% Similarity=0.113 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014196 86 WEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQL 141 (429)
Q Consensus 86 ~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nL 141 (429)
+.+|..|+..|..++...++.-.. ....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467889999999988655443222 3356799999999999999999999999875
No 92
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.12 Score=49.62 Aligned_cols=274 Identities=16% Similarity=0.210 Sum_probs=167.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHH----HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKI----KKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~----r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.|-..|..++..+|.-++..+..+..+.+.| -..++.+|..+.++.+.-..|.++..+|...+..++... ..-
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp-aal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP-AAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH-HHH
Confidence 445555566667888888998888877655422 345668999999999999999999999999999999886 467
Q ss_pred HHHHhcCccchhhhh--ccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHHh
Q 014196 150 AIMVEAGILTKLPKN--VDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILES-GSSVETKELCIGALYNL 225 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~l--L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nL 225 (429)
..|.+....+.+-.. --..+.-.|.....++..+++.. ......-.+|.+..|..-|+- .+. -++.+++...+.|
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDt-LVianciElvteL 241 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDT-LVIANCIELVTEL 241 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcce-eehhhHHHHHHHH
Confidence 777777766655221 11111223333444444554322 222233356777766665554 444 4677888888999
Q ss_pred ccCCCChhHHHhcCcHHHHHHhccCC--cchHH-HHHHHH----HHhhCChhcHHHHhcCC-CChHHHHHhcccCCChhH
Q 014196 226 SAVLDNARPMVSNGVVHTLLKLCSMK--ERLSE-KSLATL----GNLVVTSTGKKAMEDSP-LVPESLIEILTWEEKPKC 297 (429)
Q Consensus 226 s~~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~-~a~~~L----~~La~~~e~~~~i~~~~-~i~~~Lv~~L~~~~s~~~ 297 (429)
+.....++.+.+.|.+..+..++... ++.-. +++... .+.+-.+-.-+++++.- -.+....+++. ..++..
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE-mnDpda 320 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE-MNDPDA 320 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh-cCCchH
Confidence 98888888888999999999988633 22222 133222 22222111222332210 00112234455 567889
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh---cCCHHHHHHHH-HHHHHHHh
Q 014196 298 QELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL---LGSPLAQRRAS-KLLQWFKD 352 (429)
Q Consensus 298 ~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~---~~~~~~k~~A~-~lL~~l~~ 352 (429)
++.|+.+++.+.+. .+..+.+..-| -|..-.++- +.+.+++..|+ ..|..+..
T Consensus 321 ieaAiDalGilGSn-teGadlllkTg-ppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 321 IEAAIDALGILGSN-TEGADLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHhccCC-cchhHHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 99999999988654 45666676666 333333332 23555554444 56666654
No 93
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.67 E-value=0.011 Score=47.49 Aligned_cols=68 Identities=12% Similarity=0.206 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcc-cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC
Q 014196 254 LSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILT-WEEKPKCQELSAYILMILAHQSSEQRDKMAKS 322 (429)
Q Consensus 254 ~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~-~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~ 322 (429)
++...+.+|+||+. +++.+..+.+.||++ .++..-. ...+|-.+|+|+.++.+||.+++++++.+.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~-liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIP-LILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChH-HHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 45677889999997 799999999999986 6777543 24789999999999999999999998887763
No 94
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.16 Score=52.68 Aligned_cols=300 Identities=13% Similarity=0.085 Sum_probs=175.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHH-HHHHHHHHHHhccCCCchHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGR-RRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~-~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..+.+.+.+...+...+..|+..+..+.+.. .-..+.+.+.+..|-....+..... ++.+.-+.-....+-. .
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~ 208 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----P 208 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----C
Confidence 4456666677767778888888888887644 3456777788888888877654333 3323333222222211 2
Q ss_pred HHhcCccchhhhhccC---CCHHHHHHHHHHHHHhh-ccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 152 MVEAGILTKLPKNVDA---VDESTRHEFGELLLSLS-SLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~---~~~~~~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
-.+.+.++.++.++.+ ....+|+.+..+...+- ..+.+. -.-.+|+++.-+.... .+.+..++..|..++.
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~k-WrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAK-WRTKMASLELLGAMAD 283 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 2344556666666643 33566665554443332 112221 1223565555444443 3678899999999988
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
+....-......+||.+.+.|-|.. ++++.+..+|..++..-++-. |.. ++|.|++.+. +.+.... .++..|.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~---~ip~Lld~l~-dp~~~~~-e~~~~L~ 357 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK---IIPTLLDALA-DPSCYTP-ECLDSLG 357 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH---HHHHHHHHhc-CcccchH-HHHHhhc
Confidence 8777777777899999999999876 889999999988876433333 332 2358999887 4443332 3334343
Q ss_pred HHh--hC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccc----cc--cCCCCCh
Q 014196 307 ILA--HQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRR----VS--IGSPVSP 377 (429)
Q Consensus 307 ~L~--~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~----~~--~~~~~~~ 377 (429)
.-. +. ++..... .+|.|-.-+...+...+++++.+..++...-+ .+....|-++. +. +..+ -.
T Consensus 358 ~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr~t~~IidNm~~Lve--Dp~~lapfl~~Llp~lk~~~~d~-~P 429 (569)
T KOG1242|consen 358 ATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKRKTAIIIDNMCKLVE--DPKDLAPFLPSLLPGLKENLDDA-VP 429 (569)
T ss_pred ceeeeeeecchhHHH-----HHHHHHHHHhhccchhhhhHHHHHHHHHHhhc--CHHHHhhhHHHHhhHHHHHhcCC-Ch
Confidence 211 00 1111111 24555555556677788999999988886431 01111233332 22 2222 56
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 014196 378 REAQEGKKMMKNLVQQSLHK 397 (429)
Q Consensus 378 ~~~~~~k~~l~~~~~~~~~~ 397 (429)
+-|.-+-|||-.+++.--..
T Consensus 430 EvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 430 EVRAVAARALGALLERLGEV 449 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 77888888887777754333
No 95
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.1 Score=50.23 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=152.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch----HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN----KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI 191 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n----k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 191 (429)
.|.|-.=|..+|..++.-++..++.+..+.+.| -..++++|.++.++.++...+.++-..|...+..++..++.-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 334444455677888888888888887777655 3456689999999999987777766666678888887765544
Q ss_pred ccccCCcHH--HHHHhhhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhh
Q 014196 192 PLSSSEILP--FLVGILESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLV 266 (429)
Q Consensus 192 ~i~~~g~i~--~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La 266 (429)
.|-.+.... .++.+-...+. -++...+..+..+.+ .++.....-..|.+..|..=|+.. + -+...++.....|+
T Consensus 164 aiFeSellDdlhlrnlaakcnd-iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCND-IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HhcccccCChHHHhHHHhhhhh-HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 454433333 33443333333 356667777777665 444556666788888887777653 4 56677888888999
Q ss_pred CChhcHHHHhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHhhC------CH-HHHHHHHhCCchHHHHHHhhcCCHH
Q 014196 267 VTSTGKKAMEDSPLVPESLIEILTW-EEKPKCQELSAYILMILAHQ------SS-EQRDKMAKSGIVHVSLQLALLGSPL 338 (429)
Q Consensus 267 ~~~e~~~~i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~~~------~~-~~~~~i~~~G~v~~L~~ll~~~~~~ 338 (429)
....+|+.+.+.|- +..+..++.. +..|-.+-.+......+-.. ++ ..++..+- ++..-++.....++.
T Consensus 243 eteHgreflaQegl-IdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 243 ETEHGREFLAQEGL-IDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIEMNDPD 319 (524)
T ss_pred HHhhhhhhcchhhH-HHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhhcCCch
Confidence 99999998888554 4467777652 23343444444444333221 22 12222222 456667778888899
Q ss_pred HHHHHHHHHHHHHhcc
Q 014196 339 AQRRASKLLQWFKDER 354 (429)
Q Consensus 339 ~k~~A~~lL~~l~~~~ 354 (429)
++..|...|+.++..-
T Consensus 320 aieaAiDalGilGSnt 335 (524)
T KOG4413|consen 320 AIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHhccCCc
Confidence 9999999999988643
No 96
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.017 Score=58.74 Aligned_cols=191 Identities=8% Similarity=0.010 Sum_probs=132.0
Q ss_pred HHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCH
Q 014196 91 MAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDE 170 (429)
Q Consensus 91 ~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~ 170 (429)
.++..|..+++.-.-.|.-+.+..++++|++.|..++..+.--+..+++|....-+.-+..+.+.|.|+.|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34455666776555688888999999999999999887777778889999887764448889999999999999988888
Q ss_pred HHHHHHHHHHHHhhccCCCcc--ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCC---hhHHHhc---C-c
Q 014196 171 STRHEFGELLLSLSSLANTHI--PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDN---ARPMVSN---G-V 240 (429)
Q Consensus 171 ~~~~~aa~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n---~~~iv~~---G-~ 240 (429)
..+.+..+.|+.+-.++++.. .....-++..++.+..++.- .++..++..|.|+..+ ..| +...... . .
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~-~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCF-KVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCccc-ccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 888888899998887775543 23345567888898888776 7889999999998753 333 2111111 1 2
Q ss_pred HHHHHHhccCC-cchHHHHHHHHHHhhCChhc-HHHHhcCCCCh
Q 014196 241 VHTLLKLCSMK-ERLSEKSLATLGNLVVTSTG-KKAMEDSPLVP 282 (429)
Q Consensus 241 v~~Lv~lL~~~-~~~~~~a~~~L~~La~~~e~-~~~i~~~~~i~ 282 (429)
+..|++-+... +-..+..+.+|.+++.+++. +..+.+...+.
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L 610 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDML 610 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHH
Confidence 33444444332 32334446677766665544 44444444433
No 97
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.35 E-value=0.018 Score=47.49 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 014196 70 DCVLLQKSVKRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 70 ~~~~l~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 143 (429)
+-..+..|++.|.. .++....-|+..|..++++.|..|..+.+.|+-+.+..++.++|++++..|+.++..+-.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46678999999954 366666779999999999999999999899999999999999999999999999877654
No 98
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.13 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 243 TLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 243 ~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
-++.+|..++ +++++++.+...|+.
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhh
Confidence 3445555666 888888887776665
No 99
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.24 Score=50.87 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc-ccCCcHHHHH
Q 014196 126 EVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL-SSSEILPFLV 203 (429)
Q Consensus 126 ~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv 203 (429)
-++..+..-+.-|..|-.-.+ ...+- -...++-|...|.....+++..+-.+|.++-..=.+++.. --...++.|+
T Consensus 179 ~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv 256 (675)
T KOG0212|consen 179 INPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLV 256 (675)
T ss_pred CCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcc
Confidence 355555555544444433321 12111 1123344566666666777755544444332111122222 2345678888
Q ss_pred HhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcc--hHHHHH---HHHHHhhCChhcHHHHhcC
Q 014196 204 GILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKER--LSEKSL---ATLGNLVVTSTGKKAMEDS 278 (429)
Q Consensus 204 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~--~~~~a~---~~L~~La~~~e~~~~i~~~ 278 (429)
.-+.+..+ .++..|+..+.....-..+....--.|++..++.++.+.+. ..+.+. ..|..++..+...+. .+.
T Consensus 257 ~~l~ss~~-~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~ 334 (675)
T KOG0212|consen 257 PHLQSSEP-EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDY 334 (675)
T ss_pred ccccCCcH-HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cch
Confidence 88888877 78888999998888766555555557888899999987642 333322 234455555555544 566
Q ss_pred CCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 279 PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 279 ~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
|.++..|-+++. ++....+-.+..-+..+-+.-+. .-......+.+.|+.-+.+.++.+...+..+|..+..+.
T Consensus 335 ~~ii~vl~~~l~-~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 335 GSIIEVLTKYLS-DDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHHhh-cchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 777778888887 67777776666555544443221 212333467888888888888888888888777776544
No 100
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.18 E-value=0.0085 Score=42.23 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 014196 295 PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWF 350 (429)
Q Consensus 295 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l 350 (429)
+..|+.|+.+|.+++...++..+. ....++|.|+.++.+.++.++..|+|.|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 357889999999988766655544 3346799999999999999999999998754
No 101
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.6 Score=49.71 Aligned_cols=230 Identities=15% Similarity=0.207 Sum_probs=131.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
++.+=..++++|+..+..|+.+...+-..-...+..-...+++|.++.++.+++.-++..++|+|+.++.+.. ..+.
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~---e~~~ 442 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP---EAII 442 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch---hhcc
Confidence 3444457889999999999999998876544455444556789999999998888889999999999987653 2222
Q ss_pred hcCccc-hhhhhccCCC--HHHHHHHHHHHHHhhccC-----CC-ccccccCCcHHHHHHhh-h-----cCCcHHHHHHH
Q 014196 154 EAGILT-KLPKNVDAVD--ESTRHEFGELLLSLSSLA-----NT-HIPLSSSEILPFLVGIL-E-----SGSSVETKELC 218 (429)
Q Consensus 154 ~~G~i~-~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~-----~~-~~~i~~~g~i~~Lv~lL-~-----~~~~~~~~~~A 218 (429)
..--.+ .+.-+++... +..-.++++++.+|+... .+ ...... ...+.++.-| . +++...+|..|
T Consensus 443 n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred cHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence 111111 1222233222 445567888999998321 11 111212 2333333322 2 23334688889
Q ss_pred HHHHHHhccCC-CChhHHHhcCcHHHHHH---------hcc--CC---cchHHHHHHHHHHhhC-ChhcHHHHhcCCCCh
Q 014196 219 IGALYNLSAVL-DNARPMVSNGVVHTLLK---------LCS--MK---ERLSEKSLATLGNLVV-TSTGKKAMEDSPLVP 282 (429)
Q Consensus 219 ~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~---------lL~--~~---~~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~ 282 (429)
..+|..|-.+. ..+..++ .+....++. .+. |. .+++..-+.+|..+-. ....+..+.+ .+.
T Consensus 522 YeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d--~iM 598 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD--QIM 598 (859)
T ss_pred HHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH--HHH
Confidence 99999988754 4444443 233333333 222 11 1455555666664433 2223333333 233
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 283 ESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 283 ~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
..+++++....+..+.|.|..++..++.
T Consensus 599 ~lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 599 GLFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 3677777733566667776666665553
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.13 Score=56.32 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=105.6
Q ss_pred HHHHHHHHhh-ccCCCcccccc----CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 175 EFGELLLSLS-SLANTHIPLSS----SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 175 ~aa~~L~~Ls-~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
.+..+|.|+- .+++....+++ -|-.+.+...|......+++.-|+.++.-+..+.+-...+++.|.+..|+.+|.
T Consensus 1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh
Confidence 3456788875 34455555553 466777888887654337888899988888888877899999999999999997
Q ss_pred CCcchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 250 MKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 250 ~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
.....++.++.+|+.|+.+++...+..++||+. -+.+++-.+.+++.+..++..|..+.+
T Consensus 1824 S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~-yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1824 SQPSMRARVLDVLYALSSNGQIGKEALEHGGLM-YILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchh-hhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 766899999999999999999888888989987 677777545677777778888877764
No 103
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.0057 Score=56.13 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=45.0
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHh-ccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQS-KSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~-g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|-+|++.=.+ +|||| |++-+++ ||. +|+-+|.-..++||.+|+..|..+...|
T Consensus 221 ~~~pvi~psg-Ity~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 221 MREPVITPSG-ITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred hcCCccCccc-cchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 3456665554 99999 9998876 777 9999999889999999999999998877
No 104
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.025 Score=58.81 Aligned_cols=167 Identities=11% Similarity=0.098 Sum_probs=112.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhc--------CccchhhhhccCCCHHHHHHHHHHHHHhhcc
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEA--------GILTKLPKNVDAVDESTRHEFGELLLSLSSL 186 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~--------G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 186 (429)
++|.|+.+|.++|...+|.|..||..++.++. .+.+. -.+|.++...+++++..|..|...+-..-..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa----~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSA----QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhH----HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 57899999999999999999999999997753 22222 2467777778888888888776654333221
Q ss_pred CCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH
Q 014196 187 ANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN 264 (429)
Q Consensus 187 ~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~ 264 (429)
.....+. -..++..|..+-.+.++ +++++.|.+|..|-.....+..=.=.++|..++..-.|.+ .+.-+|+.....
T Consensus 205 -~~qal~~~iD~Fle~lFalanD~~~-eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 205 -QTQALYVHIDKFLEILFALANDEDP-EVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred -CcHHHHHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 1112221 23456677777656665 8999999999988754433322122467777777777775 788889999999
Q ss_pred hhCChhcHHHHhcC-CCChHHHHH
Q 014196 265 LVVTSTGKKAMEDS-PLVPESLIE 287 (429)
Q Consensus 265 La~~~e~~~~i~~~-~~i~~~Lv~ 287 (429)
+|..+..+..+..+ ..++|.|++
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHc
Confidence 99877655555432 223345555
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=2.5 Score=44.84 Aligned_cols=181 Identities=16% Similarity=0.125 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc-CC
Q 014196 90 EMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD-AV 168 (429)
Q Consensus 90 ~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~-~~ 168 (429)
...+++.-+++.+-+.....+..+ +..|-++|.+....+|--|+..+..|+... .....+-.. .+.++..|. ..
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~--~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkter 381 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRA--VNQLGQFLSHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHH--HHHHHHHhhcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhcccc
Confidence 334555555665544444555544 677788888877888888888888887764 233444333 555677777 67
Q ss_pred CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-C-CC-C------------hh
Q 014196 169 DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA-V-LD-N------------AR 233 (429)
Q Consensus 169 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~-~~-n------------~~ 233 (429)
+.+.|+.++.+|+.+|.. .|...| +.-|++.|.+.+. .+++.-..-..=|+. . .+ + ..
T Consensus 382 DvSirrravDLLY~mcD~-~Nak~I-----V~elLqYL~tAd~-sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDV-SNAKQI-----VAELLQYLETADY-SIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred chHHHHHHHHHHHHHhch-hhHHHH-----HHHHHHHHhhcch-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 788999999999999844 344444 5678888877665 455543322222221 0 00 0 01
Q ss_pred HHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCCh
Q 014196 234 PMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVP 282 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~ 282 (429)
..++.++-..++.+.-..++++..|+..+...-..+...+.|++.||.+
T Consensus 455 d~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyi 503 (938)
T KOG1077|consen 455 DYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYI 503 (938)
T ss_pred ccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 2344566666777776667899999999987777777888888877753
No 106
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=1.7 Score=46.63 Aligned_cols=223 Identities=14% Similarity=0.129 Sum_probs=140.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC---------------CCHHHHHHHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST---------------EVIGRRRAAIKA 137 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s---------------~~~~~~~~A~~a 137 (429)
.++..-+.|++.+..+-..++.-+..+++.+++.-..+.+ .++-||..|+. +||.+|...+..
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 3455556677666666677788888899888877666666 57777777752 268999999999
Q ss_pred HHHhccCCCchHHHHHh--------------cC-ccchhhhhcc-----CCCHHHHHHHHHHHHHhhccC-CCccccc--
Q 014196 138 LIQLANGTYTNKAIMVE--------------AG-ILTKLPKNVD-----AVDESTRHEFGELLLSLSSLA-NTHIPLS-- 194 (429)
Q Consensus 138 L~nLa~~~~~nk~~iv~--------------~G-~i~~Lv~lL~-----~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~-- 194 (429)
|.-|..++.+..+.+-+ +| +| |-.++. .++...|..|+.+|..+-.+. .|-..++
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI--LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI--LYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH--HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 99998887544444432 11 11 222221 233567778888888665554 3444443
Q ss_pred --------cCCcH----HHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHH
Q 014196 195 --------SSEIL----PFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLAT 261 (429)
Q Consensus 195 --------~~g~i----~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~ 261 (429)
+..++ ..+++.|++.|. .+|+.|+..++.|.. ..|...| +..|++.|...+ +++..++.-
T Consensus 336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~-SIkrralELs~~lvn-~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~ 408 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRSTILECLKDPDV-SIKRRALELSYALVN-ESNVRVM-----VKELLEFLESSDEDFKADIASK 408 (866)
T ss_pred hHHhhhcCCcHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHhccHHHHHHHHHH
Confidence 12222 245666666776 688889888887764 3455544 456788777655 788888888
Q ss_pred HHHhhC--ChhcHHHHh------c-C-----CCChHHHHHhcccCCChhHHHHHHHHHHH
Q 014196 262 LGNLVV--TSTGKKAME------D-S-----PLVPESLIEILTWEEKPKCQELSAYILMI 307 (429)
Q Consensus 262 L~~La~--~~e~~~~i~------~-~-----~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~ 307 (429)
+..++. .|+.+..|- . + ..++..++.++. ++.+...++++..|+.
T Consensus 409 I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa-~~~~e~~~y~~~rLy~ 467 (866)
T KOG1062|consen 409 IAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIA-NAFQELHEYAVLRLYL 467 (866)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHh-cCCcchhhHHHHHHHH
Confidence 888886 466655331 1 1 223457788877 4545555555555553
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.47 E-value=0.4 Score=51.69 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHH
Q 014196 42 TLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS 121 (429)
Q Consensus 42 ~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~ 121 (429)
++|++|.+-..++ ......+.+++...+.|.+.|+-.-..|...++..|+- ++. ++..+..
T Consensus 39 AmK~iIa~M~~G~--------------dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~k 99 (757)
T COG5096 39 AMKKIIAQMSLGE--------------DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQK 99 (757)
T ss_pred HHHHHHHHHhcCC--------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHh
Confidence 5677776644333 13455778888888778888888888888888877632 211 2667777
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHH
Q 014196 122 MVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPF 201 (429)
Q Consensus 122 lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~ 201 (429)
=|+++|+.+|..|+.+|..+-.. ..+ ..+++++.+++..+...+|+.|+-++..+=..+ +..+.+.|.+..
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~-----el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~ 170 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK-----ELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDI 170 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH-----HHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHH
Confidence 88889999999988888655322 111 135678888999888999999998888876443 234446788888
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 202 LVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 202 Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
+..++.+.++ .+..+|+.+|..+...
T Consensus 171 l~~l~~D~dP-~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDP-IVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence 8888888887 7888898888877644
No 108
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.44 E-value=0.73 Score=49.01 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=93.8
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh---hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHh
Q 014196 201 FLVGILESGSSVETKELCIGALYNLSAVLDNA---RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAME 276 (429)
Q Consensus 201 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~---~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~ 276 (429)
..+..|++.++ .++..|+..+..|+.--.++ ..|...|+| |.+.|.... ++.-..+.+|..++..-...+..-
T Consensus 803 tiL~rLnnksa-~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 803 TILWRLNNKSA-KVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHhcCCCh-hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 34455667776 78999999988888654444 233444543 566776442 554444444444443222222222
Q ss_pred cCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHH---HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 277 DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSE---QRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 277 ~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~---~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
-..++.|.|..+|. +...+++++++..+..+|..+++ .|+-|. +-=-|+++|.......++.|...++.+.+
T Consensus 880 Pi~dllPrltPILk-nrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILK-NRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ChhhhcccchHhhh-hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22445568999998 78899999999999999986654 343332 34567888888888888888877766664
No 109
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.34 E-value=0.93 Score=46.91 Aligned_cols=253 Identities=17% Similarity=0.108 Sum_probs=122.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH-------
Q 014196 79 KRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI------- 151 (429)
Q Consensus 79 ~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~------- 151 (429)
..|++.-..+..++|+.+..++.++. -..+++ -.|..|-.+|.+.....|-.|+.+|..|+...+ .+..
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P-~kv~vcN~evE 346 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP-QKVSVCNKEVE 346 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC-ceeeecChhHH
Confidence 34444456788899999988886552 112222 236778888889988999999999999986542 1111
Q ss_pred -HH-hcC-cc--chhhhhccCCCHHHHHHHHHHHHHhhccC-CC-cccccc-------------CCcHHHHHHhhhc-CC
Q 014196 152 -MV-EAG-IL--TKLPKNVDAVDESTRHEFGELLLSLSSLA-NT-HIPLSS-------------SEILPFLVGILES-GS 210 (429)
Q Consensus 152 -iv-~~G-~i--~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~-~~~i~~-------------~g~i~~Lv~lL~~-~~ 210 (429)
++ +.+ -| -.+..+|..+..+........+-++-.+- ++ +..+.+ ...+..|...|.+ |.
T Consensus 347 sLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg 426 (898)
T COG5240 347 SLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGG 426 (898)
T ss_pred HHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhccc
Confidence 11 111 01 12234454444333333222222221110 11 111110 0122333333322 22
Q ss_pred cHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhC-ChhcHHHHhcCCC-ChHHHH-
Q 014196 211 SVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVV-TSTGKKAMEDSPL-VPESLI- 286 (429)
Q Consensus 211 ~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~-~~e~~~~i~~~~~-i~~~Lv- 286 (429)
- +-|+.+..++...-. .++.++++ +..|.+.+.|+ +.-+-++.+|..|-. .|... .++ .+..+.
T Consensus 427 ~-eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc-ey~~I~vrIL~iLG~EgP~a~-----~P~~yvrhIyN 494 (898)
T COG5240 427 L-EFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC-EYHQITVRILGILGREGPRAK-----TPGKYVRHIYN 494 (898)
T ss_pred c-hHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc-chhHHHHHHHHHhcccCCCCC-----CcchHHHHHHH
Confidence 2 445555555554433 22333332 22344444444 222333333333322 11100 011 000111
Q ss_pred HhcccCCChhHHHHHHHHHHHHhhC--CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 287 EILTWEEKPKCQELSAYILMILAHQ--SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 287 ~~L~~~~s~~~~e~A~~~L~~L~~~--~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
.++ -.+...+..|+.+|...+-. ++-. ..-+...|-.++.+.++.++++|..+|+.++..+
T Consensus 495 R~i--LEN~ivRsaAv~aLskf~ln~~d~~~-----~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 495 RLI--LENNIVRSAAVQALSKFALNISDVVS-----PQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHH--HhhhHHHHHHHHHHHHhccCcccccc-----HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 111 13445677777777554432 2211 2224567778888899999999999999999644
No 110
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.30 E-value=0.038 Score=44.15 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=53.9
Q ss_pred CcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh--cCcHHHHHHhccCCcchHHHHHHHHHHhhC
Q 014196 197 EILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS--NGVVHTLLKLCSMKERLSEKSLATLGNLVV 267 (429)
Q Consensus 197 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~ 267 (429)
..+|+++..+.+.+. .++..|+.+|+|++..... .++. ..++..|..++.|+++-++.++..|-+|-+
T Consensus 27 ~Il~pVL~~~~D~d~-rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDS-RVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 458899999988887 8999999999999975433 3332 478888999999988777888888877643
No 111
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.22 E-value=0.18 Score=45.53 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhc----------------CcHHHHHHhccC---C----cchHHHHHHHHHHhhCChh
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSN----------------GVVHTLLKLCSM---K----ERLSEKSLATLGNLVVTST 270 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~----------------G~v~~Lv~lL~~---~----~~~~~~a~~~L~~La~~~e 270 (429)
....++..|.||+..++.+..+++. ..+..|++++.. . ..-....+.+|.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 4456788888998887777655443 356667776654 1 2567788999999999999
Q ss_pred cHHHHhcCCCC---hHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC---CchHHHHHHhh
Q 014196 271 GKKAMEDSPLV---PESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKS---GIVHVSLQLAL 333 (429)
Q Consensus 271 ~~~~i~~~~~i---~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~---G~v~~L~~ll~ 333 (429)
||+.+.+.... +..|+..+. +.+..-+.-+++++.|.| ++.+....+... +++|.|+.-+-
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~-~~s~iRR~Gva~~IrNcc-Fd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTE-HKSVIRRGGVAGTIRNCC-FDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHhh-ccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999865422 235666666 567777888899999965 555555566653 57777766555
No 112
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.08 E-value=1.3 Score=41.65 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=122.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHH-------hhcCCC-----HHHHHHHHHHHHHhcc
Q 014196 77 SVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVS-------MVSTEV-----IGRRRAAIKALIQLAN 143 (429)
Q Consensus 77 lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~-------lL~s~~-----~~~~~~A~~aL~nLa~ 143 (429)
+|..|.. ++.+..|+.+|..--...++..-.+-. -|.+..|++ .|..+. ..-..+|+..|..+|.
T Consensus 2 ~i~~L~~--~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs 79 (262)
T PF04078_consen 2 LILDLCN--PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS 79 (262)
T ss_dssp HHHHTSS--HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhcC--cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 3444543 677888887777655444555555554 577766654 333322 2334567777888899
Q ss_pred CCCchHHHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCcccc---ccCCcHHHHHHhhhcCCcHHHH
Q 014196 144 GTYTNKAIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTHIPL---SSSEILPFLVGILESGSSVETK 215 (429)
Q Consensus 144 ~~~~nk~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i---~~~g~i~~Lv~lL~~~~~~~~~ 215 (429)
|+ +.|....++...-.|...|+..+ ...|-...+++..|...++ ...| -..+.+|..++.++.|+. -.|
T Consensus 80 hp-etr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~-~evi~fLl~tEiiplcLr~me~Gse-lSK 156 (262)
T PF04078_consen 80 HP-ETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDD-PEVISFLLQTEIIPLCLRIMEFGSE-LSK 156 (262)
T ss_dssp -T-TTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT---HHHHHHHHCTTHHHHHHHHHHHS-H-HHH
T ss_pred Ch-HHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCc-HHHHHHHHhhchHHHHHHHHHhccH-HHH
Confidence 87 58999999998777777776443 2234455677777775432 2233 378999999999999986 567
Q ss_pred HHHHHHHHHhccCCCChhHHHhc-Cc-------HHHHHHhc-cCCc-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 216 ELCIGALYNLSAVLDNARPMVSN-GV-------VHTLLKLC-SMKE-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 216 ~~A~~aL~nLs~~~~n~~~iv~~-G~-------v~~Lv~lL-~~~~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
.-|.-.+..+-.++.....+... +- +..++.-+ .+++ .+.+..+.+-..|+.++..|.++.+
T Consensus 157 tvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 157 TVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777776665544444332 22 23333322 2444 7888888888899999988888875
No 113
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.07 E-value=0.92 Score=48.29 Aligned_cols=257 Identities=15% Similarity=0.129 Sum_probs=145.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch--HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV--KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~--~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+...+..|.+.++.++.+|+..+..++.--. .--+.+..+|.| |..-|...++++.-..+.||..+.....-.|.
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 45566788888899999999999998875211 112356667754 67788888898876666666555422111111
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccC---CcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS---EILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
.==-.|.+|.|..+|.+....+++++..++..++....- .+... -.--.|+.+|.+... +++++|..++..++.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE--~v~aREWMRIcfeLlelLkahkK-~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE--YVSAREWMRICFELLELLKAHKK-EIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence 111247899999999888888899999999998854322 22211 122357888888776 789999999988875
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCCh---HHHHHhcccCCChhHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVP---ESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~---~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
.-. -.+++..|+.-|+.. +-+.+.+.+++ ...+.+..|-. |+|+.=-+ .....+|.-.+.+
T Consensus 955 aIG------PqdVLatLlnnLkvq-eRq~RvcTtva--------IaIVaE~c~pFtVLPalmneYr-tPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 955 AIG------PQDVLATLLNNLKVQ-ERQNRVCTTVA--------IAIVAETCGPFTVLPALMNEYR-TPEANVQNGVLKA 1018 (1172)
T ss_pred hcC------HHHHHHHHHhcchHH-HHHhchhhhhh--------hhhhhhhcCchhhhHHHHhhcc-CchhHHHHhHHHH
Confidence 311 122333333333322 11112222221 11112222222 23333222 3444555544444
Q ss_pred HHHHhhCC-HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 305 LMILAHQS-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 305 L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
|..+...- +....-+- -+.|.|-+.+-+.+...++-|+.+++.+.=
T Consensus 1019 lsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 44333221 11122222 245666677777788888888888887774
No 114
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=0.19 Score=53.31 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
....+.+.++..++.+++.|+..+..+-.. +.+...+.|.++.|-+++.+.++.+..+|+.+|..+...+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 456788888888999999988888887654 3567788999999999999999999999999999997665
No 115
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.45 Score=49.90 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc------hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED------VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~------~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
......++.+...+..++..|+..+.-+++.. ..+...+.+ .+...+..++.+.+..++..|+.+|+.+-.-+
T Consensus 234 ~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 234 ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 35678888888877888888876666554322 112222222 23566677777666566666666555432111
Q ss_pred C--------------------------------------------------chHHHHHhcCccchhhhhccCCCHHHHHH
Q 014196 146 Y--------------------------------------------------TNKAIMVEAGILTKLPKNVDAVDESTRHE 175 (429)
Q Consensus 146 ~--------------------------------------------------~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~ 175 (429)
+ +...-|+..|+-..++.=++.--.++|+.
T Consensus 313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~A 392 (823)
T KOG2259|consen 313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRA 392 (823)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHH
Confidence 0 11222334444444555554333678888
Q ss_pred HHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-ch
Q 014196 176 FGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RL 254 (429)
Q Consensus 176 aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~ 254 (429)
|+..++.|+. +++.++ ..++..|+.++.+... .++..|..+|..++.+-. +...-++.+++.|.|.. ++
T Consensus 393 AV~Sl~~La~---ssP~FA-~~aldfLvDMfNDE~~-~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dv 462 (823)
T KOG2259|consen 393 AVASLCSLAT---SSPGFA-VRALDFLVDMFNDEIE-VVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDV 462 (823)
T ss_pred HHHHHHHHHc---CCCCcH-HHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHH
Confidence 8888999884 334443 2368899999988776 789999999999887632 23344566666666554 44
Q ss_pred HHHHHHHH
Q 014196 255 SEKSLATL 262 (429)
Q Consensus 255 ~~~a~~~L 262 (429)
++..-..|
T Consensus 463 Re~l~elL 470 (823)
T KOG2259|consen 463 REALRELL 470 (823)
T ss_pred HHHHHHHH
Confidence 44333333
No 116
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.82 E-value=1.2 Score=41.49 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhccCCCccccccCCcHHHHHHhhhc----CCcHHHHHHHHHHHHHhccCCCC--hhHHHhcCcHHHHHHh
Q 014196 174 HEFGELLLSLSSLANTHIPLSSSEILPFLVGILES----GSSVETKELCIGALYNLSAVLDN--ARPMVSNGVVHTLLKL 247 (429)
Q Consensus 174 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~~A~~aL~nLs~~~~n--~~~iv~~G~v~~Lv~l 247 (429)
-++..+|-.++++++.+..+..+-.--.|..+|.. ...+-++-.+++++..|...++. ...+...++||..+..
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 34556667778888888877765544455555543 33345788899999999986543 3667889999999999
Q ss_pred ccCCc-chHHHHHHHHHHhhCChhcHHHHhcC-------CCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHH
Q 014196 248 CSMKE-RLSEKSLATLGNLVVTSTGKKAMEDS-------PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKM 319 (429)
Q Consensus 248 L~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~-------~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i 319 (429)
+..++ ..+.-|..++..+-.++.|-..+... +-+...+|..+...+++..-.+.+.+..+|+.. +..|..+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~aL 255 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAAL 255 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 98765 44455666777776777766555432 111112233333268888899999999999864 6666665
Q ss_pred HhC---CchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 320 AKS---GIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 320 ~~~---G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
... +.-..-...+...++..|+.-..++.++.
T Consensus 256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 542 22222222333345555655555666554
No 117
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.77 E-value=2.4 Score=46.41 Aligned_cols=263 Identities=14% Similarity=0.091 Sum_probs=140.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch-HHHHHh
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN-KAIMVE 154 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n-k~~iv~ 154 (429)
.+++...+.|.+.+.-|...|..-...+..+-+.=-+...+..|+++|++.+.++|..|+.+|+-|+..-.+. -+.+++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 6788888888888888877776433222111111112346888999999999999999999999998543222 223333
Q ss_pred cCccchhhhhccCCCHHHHHHHHHHHH-HhhccCCCccccccCCcHHHHHHhhhc-----CCcHHHHHHHHHHHHHhc-c
Q 014196 155 AGILTKLPKNVDAVDESTRHEFGELLL-SLSSLANTHIPLSSSEILPFLVGILES-----GSSVETKELCIGALYNLS-A 227 (429)
Q Consensus 155 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~nLs-~ 227 (429)
.|..-+-++....+...+-.|. .++..+............+.+...+.. ++...++-.++..+...- .
T Consensus 89 -----~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 89 -----NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred -----HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 1222222333333333332222 223222111111123344444444433 222235656666555432 2
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC--hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT--STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~--~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
...-... ...+....++.-+..+. .++++++.+|+.|+.. .+.-..+. ..|++-|....++....--+.+
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li------~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELI------EHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH------HHHHhccCCCCchHHHHHHHHH
Confidence 2221111 23344555555555543 8899999999988762 22222222 2566656533444445556677
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHh---hcCCHHHHHHHHHHHHHHH
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLA---LLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll---~~~~~~~k~~A~~lL~~l~ 351 (429)
|..+|..+ ..|-----..++|.+..-. ....++.++.....+..|-
T Consensus 237 l~~i~r~a-g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 237 LAAICRQA-GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHHHHh-cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 77887632 1221111234778888877 5567788888877766554
No 118
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.70 E-value=0.73 Score=49.78 Aligned_cols=138 Identities=15% Similarity=0.085 Sum_probs=101.2
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHH
Q 014196 29 RQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKK 108 (429)
Q Consensus 29 ~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~ 108 (429)
+-.+.... +-|.-+|+|+.-+-... +...| +...-.+..+.+.|+++|+..|..|+..+..+- .++.-.
T Consensus 58 ~dViK~~~-trd~ElKrL~ylYl~~y-----ak~~P---~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~ 126 (757)
T COG5096 58 PDVIKNVA-TRDVELKRLLYLYLERY-----AKLKP---ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG 126 (757)
T ss_pred HHHHHHHH-hcCHHHHHHHHHHHHHH-----hccCH---HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH
Confidence 33334433 78899999999887765 11111 334556788889999999999987777776553 122222
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhc
Q 014196 109 LMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSS 185 (429)
Q Consensus 109 ~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 185 (429)
.+++++.+++.++++.+|..|+-++.++=.-+ +....+.|.+..+..++...++.+..+|..+|..+..
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 24889999999999999999999999986543 5677788999888888988888888888877777763
No 119
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=0.78 Score=50.56 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=116.6
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHH-H-hccCCCChhHHHhcCcHHHHHHhccCC---c-chHHHHHHHHHHhhC-
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALY-N-LSAVLDNARPMVSNGVVHTLLKLCSMK---E-RLSEKSLATLGNLVV- 267 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~-n-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a~~~L~~La~- 267 (429)
.-|+.|..++||++... ++|- .+--++ . |+.++.-...++..++-.-.+..|.+. + +.+..|+.+|..++.
T Consensus 510 sVGIFPYVLKLLQS~a~-ELrp-iLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSAR-ELRP-ILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred ccchHHHHHHHhccchH-hhhh-hHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 67999999999999876 6665 444444 2 455554456677776666666667662 2 566777888888887
Q ss_pred ChhcHHHHhcCCCChHHHHHhcccCC-ChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 014196 268 TSTGKKAMEDSPLVPESLIEILTWEE-KPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKL 346 (429)
Q Consensus 268 ~~e~~~~i~~~~~i~~~Lv~~L~~~~-s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~l 346 (429)
.+-|+++..+ ++++..-.+.|+ ++ .+-.+..++-+|..|-..-++.|=.=++.++...|..++.+..++++..|...
T Consensus 588 f~lGQ~acl~-~~li~iCle~ln-d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 588 FKLGQKACLN-GNLIGICLEHLN-DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred cchhHHHhcc-ccHHHHHHHHhc-CCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 5888888888 444446667776 43 46778888888988887656666666778999999999999999999999998
Q ss_pred HHHHHhcc
Q 014196 347 LQWFKDER 354 (429)
Q Consensus 347 L~~l~~~~ 354 (429)
|+-|-+..
T Consensus 666 Lgtfl~~~ 673 (1387)
T KOG1517|consen 666 LGTFLSNG 673 (1387)
T ss_pred HHHHhccc
Confidence 88877644
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.47 E-value=1.7 Score=45.61 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
......++..-+ ++...|.-|+..|....++-|+..... |..++++.+++|..+|..|+..|-.++.++.+.-.
T Consensus 22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 344555555544 578899999999999999888876654 77899999999999999999999999998654555
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhh---cCCcHHHHHHHHHHHH
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILE---SGSSVETKELCIGALY 223 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~~A~~aL~ 223 (429)
.|++ .|+++|++.+......+-.+|..|-..+. .+.+..|..-+. +++. .+++.++.-|.
T Consensus 96 kvaD-----vL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de-~~Re~~lkFl~ 158 (556)
T PF05918_consen 96 KVAD-----VLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDE-QVRERALKFLR 158 (556)
T ss_dssp HHHH-----HHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-H-HHHHHHHHHHH
T ss_pred HHHH-----HHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCch-HHHHHHHHHHH
Confidence 5543 47888986664433333334544442221 122333444333 4444 56777666554
No 121
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.41 E-value=2.7 Score=44.00 Aligned_cols=255 Identities=15% Similarity=0.076 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch--HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV--KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~--~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.-.+...++.|.+..+.++..|+.....+++-=. .--..+..+|.| |..-|...++++.-..+.|+..+-.... .
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~-~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHR-F 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhc-c
Confidence 3457788899999999999999988887774211 112445566654 5667777888888777777766643321 1
Q ss_pred H-HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccC---CcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 149 K-AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS---EILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 149 k-~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
+ ..=--.|.+|.|..+|++....+..+....+..++.+... .++-. ..--.|+.+|.+-+. +++++|..++..
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe--yi~~rEWMRIcfeLvd~Lks~nK-eiRR~A~~tfG~ 756 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE--YIGVREWMRICFELVDSLKSWNK-EIRRNATETFGC 756 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhh
Confidence 1 1001258899999999887777777777788888855432 22211 122357888888776 799999888887
Q ss_pred hccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCCh---HHHHHhcccCCChhHHHHH
Q 014196 225 LSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVP---ESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 225 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~---~~Lv~~L~~~~s~~~~e~A 301 (429)
++..- --.+++..|+.-|+. +++-..+...++ ...+.+..|-. |+|+.=-. .....+|.
T Consensus 757 Is~ai------GPqdvL~~LlnnLkv----qeRq~Rvctsva-----I~iVae~cgpfsVlP~lm~dY~-TPe~nVQn-- 818 (975)
T COG5181 757 ISRAI------GPQDVLDILLNNLKV----QERQQRVCTSVA-----ISIVAEYCGPFSVLPTLMSDYE-TPEANVQN-- 818 (975)
T ss_pred HHhhc------CHHHHHHHHHhcchH----HHHHhhhhhhhh-----hhhhHhhcCchhhHHHHHhccc-CchhHHHH--
Confidence 77421 112233334443332 222221111111 11122222322 23332222 23444554
Q ss_pred HHHHHHHhhCCH----HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 302 AYILMILAHQSS----EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 302 ~~~L~~L~~~~~----~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++|-.+|..-+ ..+.-+- -+.|.|-+.+.+.++..++-|..+++.+.=
T Consensus 819 -GvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 819 -GVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 44555554211 1122222 245666667777788888888888887763
No 122
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.40 E-value=4.3 Score=37.83 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCc--cccccCCcHHH
Q 014196 129 GRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTH--IPLSSSEILPF 201 (429)
Q Consensus 129 ~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~ 201 (429)
.-.-+|+..|..++.|. +.|...+++-.--.|-..|...+ .-.|-.+.+.+..|...++.- ..+...++||.
T Consensus 94 nRVcnaL~LlQcvASHp-dTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHP-DTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCc-chHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 44567788888888887 58888888765434444554322 345666777888888665422 22337899999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhc-CcHHHHHHhc--------cCCc-chHHHHHHHHHHhhCChhc
Q 014196 202 LVGILESGSSVETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLKLC--------SMKE-RLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 202 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL--------~~~~-~~~~~a~~~L~~La~~~e~ 271 (429)
.++.+..|+. ..|.-|.-.+..+-.++.....+... +-+..+..+| +.++ .+.+.++.+..+|+.++..
T Consensus 173 CLrime~GSe-lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 173 CLRIMESGSE-LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHHhcccH-HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 9999999997 57777777777777777666555442 4444333333 2334 7788888888999999988
Q ss_pred HHHHhc
Q 014196 272 KKAMED 277 (429)
Q Consensus 272 ~~~i~~ 277 (429)
|.+...
T Consensus 252 r~aL~~ 257 (293)
T KOG3036|consen 252 RAALRS 257 (293)
T ss_pred HHHHHh
Confidence 887765
No 123
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.34 E-value=0.057 Score=33.22 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
.+|.+++++.++++++|..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999998753
No 124
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.28 E-value=3.6 Score=42.74 Aligned_cols=264 Identities=14% Similarity=0.067 Sum_probs=145.7
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhh-hchHHHHHHHhcCcHH-HHH-HhhcC-CCHHHHHHHHHHHHH-hcc-----
Q 014196 75 QKSVKRLHFG-SWEEKEMAAKEIEKLAK-EDVKIKKLMAELGVIQ-MLV-SMVST-EVIGRRRAAIKALIQ-LAN----- 143 (429)
Q Consensus 75 ~~lv~~L~~~-~~~~~~~Aa~~L~~La~-~~~~~r~~i~~~G~i~-~Lv-~lL~s-~~~~~~~~A~~aL~n-La~----- 143 (429)
..+|.....+ ....+.+++..+...+. .+| ...+...++|- .+| .-++. ++..++-+|+.+|.+ |-+
T Consensus 136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf 213 (858)
T COG5215 136 EEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNF 213 (858)
T ss_pred HHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555544 34677888888888774 344 23333444332 222 23333 467889999999988 321
Q ss_pred CCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHH
Q 014196 144 GTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGAL 222 (429)
Q Consensus 144 ~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 222 (429)
..|.++..+.+. ....-+..+.+.+..+...|..+-... +.-..+.+.-....+.+.+++.+. ++...|..--
T Consensus 214 ~~E~erNy~mqv-----vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd-~va~qavEfW 287 (858)
T COG5215 214 CYEEERNYFMQV-----VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND-EVAIQAVEFW 287 (858)
T ss_pred cchhhhchhhee-----eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-HHHHHHHHHH
Confidence 112233333321 233345556666666666666554322 211122232223344455566655 5555555433
Q ss_pred HHhccCC---------------CCh--hHHHhcCcHHHHHHhccC----C---c-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 223 YNLSAVL---------------DNA--RPMVSNGVVHTLLKLCSM----K---E-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 223 ~nLs~~~---------------~n~--~~iv~~G~v~~Lv~lL~~----~---~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
.-+|... .|. .+..-++++|.|+.||.. . + .....|.++|.-.+... ...|++
T Consensus 288 sticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i~~ 365 (858)
T COG5215 288 STICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKIMR 365 (858)
T ss_pred HHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHhHH
Confidence 3333221 111 222235689999999963 1 2 34444555554333211 123333
Q ss_pred CCCChHHHHH-hcccCCChhHHHHHHHHHHHHhhCCH-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 278 SPLVPESLIE-ILTWEEKPKCQELSAYILMILAHQSS-EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 278 ~~~i~~~Lv~-~L~~~~s~~~~e~A~~~L~~L~~~~~-~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+ +. ..|+ -++ +.+-..+|.|+.+++.+.++.. ..+..++ ..++|.+...+.+..--+|..++|.++.+.++
T Consensus 366 -p-Vl-~FvEqni~-~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 366 -P-VL-GFVEQNIR-SESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred -H-HH-HHHHHhcc-CchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 1 22 2332 344 5777889999999999988643 3444444 45689998888877778999999999999883
No 125
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.23 E-value=0.16 Score=38.12 Aligned_cols=65 Identities=11% Similarity=0.186 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc--chHHHHHHHHHHhhCChhcHHHHhcCC
Q 014196 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE--RLSEKSLATLGNLVVTSTGKKAMEDSP 279 (429)
Q Consensus 215 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~--~~~~~a~~~L~~La~~~e~~~~i~~~~ 279 (429)
.+.|++|+.+++..+.....+-+.++|+.++++....+ .++--|..+|.-++.+.+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 35699999999998888887878899999999988765 788888999999999999998887654
No 126
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.00 E-value=0.15 Score=46.09 Aligned_cols=122 Identities=16% Similarity=0.035 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHhc----------------CccchhhhhccCC------CHHHHHHHHHHHHHhh
Q 014196 127 VIGRRRAAIKALIQLANGTYTNKAIMVEA----------------GILTKLPKNVDAV------DESTRHEFGELLLSLS 184 (429)
Q Consensus 127 ~~~~~~~A~~aL~nLa~~~~~nk~~iv~~----------------G~i~~Lv~lL~~~------~~~~~~~aa~~L~~Ls 184 (429)
+......++..|.||+..+ .....+.+. .++..|+.++..+ ....-...|.+|.|+|
T Consensus 8 ~~~~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CcchHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3345566778888888876 344434321 2456666666441 1334556788999999
Q ss_pred ccCCCcccccc--CCc--HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh---cCcHHHHHHhccC
Q 014196 185 SLANTHIPLSS--SEI--LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS---NGVVHTLLKLCSM 250 (429)
Q Consensus 185 ~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~---~G~v~~Lv~lL~~ 250 (429)
.....|..+.+ .+. +..|+.++.+.+. .-+.-++.+|.|+|...+....+.. .+++|.|+--|..
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~-iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV-IRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 99888887763 334 6777777777754 4466788999999998888877766 3566666655543
No 127
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.98 E-value=2.4 Score=44.01 Aligned_cols=250 Identities=11% Similarity=0.127 Sum_probs=145.9
Q ss_pred CHHHHHHHHHHHHHHh---h---hchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCcc
Q 014196 85 SWEEKEMAAKEIEKLA---K---EDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La---~---~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i 158 (429)
+..++..|+.+|..-. + ..++.|..+ ....+..-+.+|.++|.+|..+|..+..-....-+.+.+.-..
T Consensus 191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~ 265 (858)
T COG5215 191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA 265 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665411 1 112233332 3344566677889999999999988765433333344444333
Q ss_pred chhhhhccCCCHHHHHHHHHHHHHhhccC-C------Cccc-------cc---cCCcHHHHHHhhhcC------CcHHHH
Q 014196 159 TKLPKNVDAVDESTRHEFGELLLSLSSLA-N------THIP-------LS---SSEILPFLVGILESG------SSVETK 215 (429)
Q Consensus 159 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~------~~~~-------i~---~~g~i~~Lv~lL~~~------~~~~~~ 215 (429)
......+.+...++...+...-..++... + .-+. ++ -.+.+|.|+++|... +.....
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 33445556666665555544332443221 0 0000 01 245789999999762 222344
Q ss_pred HHHHHHHHHhccCCCChhHHHhcCcHHHHHHhc----cCCc-chHHHHHHHHHHhhC--ChhcHHHHhcCCCChHHHHHh
Q 014196 216 ELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC----SMKE-RLSEKSLATLGNLVV--TSTGKKAMEDSPLVPESLIEI 288 (429)
Q Consensus 216 ~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL----~~~~-~~~~~a~~~L~~La~--~~e~~~~i~~~~~i~~~Lv~~ 288 (429)
..|..+|.-.+....++ .+.+++... ..++ .-++.++.+++.+-. +.+.+..++. ..+| .+...
T Consensus 346 maA~sCLqlfaq~~gd~-------i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp-~i~n~ 416 (858)
T COG5215 346 MAASSCLQLFAQLKGDK-------IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALP-GIENE 416 (858)
T ss_pred hhHHHHHHHHHHHhhhH-------hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhH-HHHHh
Confidence 55556665444322222 233444443 3344 677888888887766 4566777776 4554 78877
Q ss_pred cccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC---CHHHHHHHHHHHHHHHh
Q 014196 289 LTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG---SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 289 L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~---~~~~k~~A~~lL~~l~~ 352 (429)
+. +..-.+++.++++++.++.+ +...+--.|-++..+.-+..| .+..-.+.+|...+|.+
T Consensus 417 m~-D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 417 MS-DSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD 479 (858)
T ss_pred cc-cceeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence 77 67888899999999998753 333344467677776655544 56777788887777776
No 128
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=93.81 E-value=1 Score=39.26 Aligned_cols=118 Identities=10% Similarity=0.056 Sum_probs=85.6
Q ss_pred hHHHhcCcHHHHHHhccCCc-------chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCC-ChhHHHHHHHH
Q 014196 233 RPMVSNGVVHTLLKLCSMKE-------RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEE-KPKCQELSAYI 304 (429)
Q Consensus 233 ~~iv~~G~v~~Lv~lL~~~~-------~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~-s~~~~e~A~~~ 304 (429)
..++..||+..|+.++.+.. .....++.++.+|-.+.-.........- +..++.+++... +....+.|..+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~F-I~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSF-IKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHH-HHHHHHHHccccccchHHHHHHHH
Confidence 45677889999999987642 4455566666676665332333333222 235666665222 46788899999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
|-++...++...+.+.++=-++.|+..++..++..+.+|..++-.|-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999988888888888888999999999999999999998765554
No 129
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.80 E-value=0.51 Score=44.50 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc
Q 014196 88 EKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD 166 (429)
Q Consensus 88 ~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~ 166 (429)
....|+..|.-++--+|..|..+.+..++..|+++|.. .++.++.+++.+|..+-.++..|....-+.+|+..++.++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567888888888788999999999999999999954 57899999999999998888788888888999999999997
Q ss_pred CCC--HHHHHHHHHHHHHh
Q 014196 167 AVD--ESTRHEFGELLLSL 183 (429)
Q Consensus 167 ~~~--~~~~~~aa~~L~~L 183 (429)
..+ .+++-.+...|+-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 654 56666677654433
No 130
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.71 E-value=8.1 Score=42.56 Aligned_cols=179 Identities=18% Similarity=0.152 Sum_probs=98.7
Q ss_pred HHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc----CCC----HHHHH
Q 014196 108 KLMAELGVIQMLVSMVSTE-----VIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD----AVD----ESTRH 174 (429)
Q Consensus 108 ~~i~~~G~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~----~~~----~~~~~ 174 (429)
..+.++|++..|+++|.+- +.+.....+..|..++.-. .||+.+.+.|+++.|+..+. ... .+.-+
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 4566799999999999762 3445556677777777775 79999999999999988774 222 23333
Q ss_pred HHHHHHHHhhccC---CCccccc----------cCCcHHHHHHhhhcC---CcHHHHHHHHHHHHHhccCCCChhH-HHh
Q 014196 175 EFGELLLSLSSLA---NTHIPLS----------SSEILPFLVGILESG---SSVETKELCIGALYNLSAVLDNARP-MVS 237 (429)
Q Consensus 175 ~aa~~L~~Ls~~~---~~~~~i~----------~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~nLs~~~~n~~~-iv~ 237 (429)
....++..|.... +...... +..-+..|++.+.+. +...+....++.|-+|+...+.... +++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 3333333332211 1111111 111256666666553 2236777788899999987666533 332
Q ss_pred cCcHHHHHHhcc-CCc--chHHHHHHHHHHhhC----C---hhcHHHHhcCCCChHHHHHhcc
Q 014196 238 NGVVHTLLKLCS-MKE--RLSEKSLATLGNLVV----T---STGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 238 ~G~v~~Lv~lL~-~~~--~~~~~a~~~L~~La~----~---~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
-|.+.+++=. |.+ .--...+..+..++. + ...|..|.+.| ++...+++|.
T Consensus 270 --~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~G-Iv~~a~~YL~ 329 (802)
T PF13764_consen 270 --HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESG-IVQDAIDYLL 329 (802)
T ss_pred --HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhh-HHHHHHHHHH
Confidence 2333333211 111 111222334444433 2 23467777754 4456777775
No 131
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.67 E-value=1.2 Score=45.18 Aligned_cols=128 Identities=14% Similarity=0.217 Sum_probs=89.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCCC---chHHHHHhcCccchhhhhccCCC-----HH--HHHHHHHHHHHhhccCCC
Q 014196 120 VSMVSTEVIGRRRAAIKALIQLANGTY---TNKAIMVEAGILTKLPKNVDAVD-----ES--TRHEFGELLLSLSSLANT 189 (429)
Q Consensus 120 v~lL~s~~~~~~~~A~~aL~nLa~~~~---~nk~~iv~~G~i~~Lv~lL~~~~-----~~--~~~~aa~~L~~Ls~~~~~ 189 (429)
..+++..+.+-|-+|+.....+..+++ .||..+.++=+++.+-+++.+.+ ++ .+..+..+|.-+|..++.
T Consensus 17 ~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pEl 96 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPEL 96 (698)
T ss_pred HHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhh
Confidence 344444455556666666666766653 36888999989999988887543 22 244455567667765532
Q ss_pred --ccccccCCcHHHHHHhhhcCCcHH------HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 190 --HIPLSSSEILPFLVGILESGSSVE------TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 190 --~~~i~~~g~i~~Lv~lL~~~~~~~------~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
...+. ..||.|..++..+...+ +..++-.+|+.++.++.....++..|+++.+.+.-.
T Consensus 97 Ash~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 97 ASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred ccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 22222 46999999998753323 677899999999999989999999999999987644
No 132
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.60 E-value=2.4 Score=46.54 Aligned_cols=138 Identities=20% Similarity=0.156 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc-hH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT-NK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~-nk 149 (429)
+..++.++++|+. ...+..|++++..++...-..-..-+-..+++.|++.|.......+...+.++..|..+-.. ..
T Consensus 610 ~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~ 687 (1233)
T KOG1824|consen 610 PRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP 687 (1233)
T ss_pred HHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456777777765 56777888888888753221110111123578888888876666677777777666543211 12
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCc
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS 211 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 211 (429)
...+++ ++.-+..++...+...-+.+...|..+.........-...-.++.++.+++++--
T Consensus 688 ~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll 748 (1233)
T KOG1824|consen 688 AELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL 748 (1233)
T ss_pred HHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc
Confidence 222221 2233445565555555666777777776443222222245678899999988643
No 133
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.60 E-value=0.75 Score=44.30 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=137.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccC--CCHHHHHHHHHHHHHhhccCCCccccc-cCC
Q 014196 122 MVSTEVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDA--VDESTRHEFGELLLSLSSLANTHIPLS-SSE 197 (429)
Q Consensus 122 lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g 197 (429)
+++.=++-.+--|+.+|.++....+ .|..+. +...-..++.+++. +..+.+.+..-++|-|+........|- --.
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344456678888999999999874 555544 43334445666653 235667777778888886654443232 234
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CC-CChhHHHhcCcHHHHHHhccCC---c-chH---HHHHHHHHH----
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSA-VL-DNARPMVSNGVVHTLLKLCSMK---E-RLS---EKSLATLGN---- 264 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~-~n~~~iv~~G~v~~Lv~lL~~~---~-~~~---~~a~~~L~~---- 264 (429)
.|.-|+++++.....++-+-+++.+.|++. .+ .....+.-.|-+.+-++.|... + +++ +..-..|.+
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 577788888876555677789999999987 32 3334444455455555555421 1 222 122222211
Q ss_pred hhCCh------------------------hcHHHHh-cCCCChHHHHHhcccCCChh-HHHHHHHHHHHHhhCCHHHHHH
Q 014196 265 LVVTS------------------------TGKKAME-DSPLVPESLIEILTWEEKPK-CQELSAYILMILAHQSSEQRDK 318 (429)
Q Consensus 265 La~~~------------------------e~~~~i~-~~~~i~~~Lv~~L~~~~s~~-~~e~A~~~L~~L~~~~~~~~~~ 318 (429)
++..+ .+...+. +.-.+...|.+++. ...+. .-..|+.=+..+....|+.+..
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAV 394 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHH
Confidence 11111 1222222 22234446666776 33333 1223455555556667899999
Q ss_pred HHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 319 MAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 319 i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
+.+-|+=..+.+++...++++|-.|...++.+-
T Consensus 395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999999887664
No 134
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.49 E-value=1 Score=42.41 Aligned_cols=194 Identities=14% Similarity=0.174 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHh-cCccchhhh-------hccCCC--H--HH-HHHHHHHHHHhhccCCCcccc
Q 014196 127 VIGRRRAAIKALIQLANGTYTNKAIMVE-AGILTKLPK-------NVDAVD--E--ST-RHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 127 ~~~~~~~A~~aL~nLa~~~~~nk~~iv~-~G~i~~Lv~-------lL~~~~--~--~~-~~~aa~~L~~Ls~~~~~~~~i 193 (429)
+++.++.|+.-|..--...++-.-.+.. -|.+..|.+ .+..+. . .. .-+|.++|-.++++++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677887766555433222222333443 354433321 122222 1 11 223455677888899999888
Q ss_pred ccCCcHHHHHHhhhcCCc----HHHHHHHHHHHHHhccCC--CChhHHHhcCcHHHHHHhccCCcch-HHHHHHHHHHhh
Q 014196 194 SSSEILPFLVGILESGSS----VETKELCIGALYNLSAVL--DNARPMVSNGVVHTLLKLCSMKERL-SEKSLATLGNLV 266 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~~~----~~~~~~A~~aL~nLs~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~-~~~a~~~L~~La 266 (429)
.++...-.|..+|...+. +.+|-.+++++..|.+.+ +-...+.+.+.||..+..+..+++. +--|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 888877777777765432 357778899999998743 3346678899999999999766543 444566666766
Q ss_pred CChhcHHHHhcCCC-------ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh
Q 014196 267 VTSTGKKAMEDSPL-------VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK 321 (429)
Q Consensus 267 ~~~e~~~~i~~~~~-------i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~ 321 (429)
.+++|-+.+..... +...+|..+....+++.-++.+.+-..|+.+ +..+..+..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 66666665544311 1123333333357788888888888888865 455555543
No 135
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.41 E-value=1.3 Score=47.52 Aligned_cols=220 Identities=12% Similarity=0.075 Sum_probs=132.2
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH-HhccCCCchHHHHHhcCccchhhhhccCCCHHHH--HHHHHHH
Q 014196 104 VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALI-QLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR--HEFGELL 180 (429)
Q Consensus 104 ~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~-nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~--~~aa~~L 180 (429)
..-|...++.|+...|..|.....++.+-.+..+|. .+.+..+.. . ..++++...++.. .... -++..++
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-~-----~v~~~~~s~~~~d-~~~~en~E~L~al 566 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-Y-----EVVKPLDSALHND-EKGLENFEALEAL 566 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-h-----hhhhhhcchhhhh-HHHHHHHHHHHHh
Confidence 345677788999999999998888888888888887 555544211 1 2333443333322 1222 2355677
Q ss_pred HHhhccCC-CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHHHh-cCcHHHHHHhccCCc-chHH
Q 014196 181 LSLSSLAN-THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPMVS-NGVVHTLLKLCSMKE-RLSE 256 (429)
Q Consensus 181 ~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~-~G~v~~Lv~lL~~~~-~~~~ 256 (429)
.||++.++ .+..|...-+++.+-.++...++ ..++.++..+.||..++.-- ..+++ ...++....++...+ .+..
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 77876653 34455544444444455555555 67888999999999887655 34555 355666666555432 4444
Q ss_pred HHHHHHHHhhCChhc-HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHh
Q 014196 257 KSLATLGNLVVTSTG-KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLA 332 (429)
Q Consensus 257 ~a~~~L~~La~~~e~-~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll 332 (429)
.+++.+..++...++ ...+.+.-.....++.++. +.....|-..+++..++...+.+....+.....++.+..+-
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~-~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQ-DEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhc-CchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 444455434332221 1112222222346777887 78888998888888887766666777776666555554443
No 136
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.38 E-value=0.26 Score=43.99 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=74.3
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHH-hccCCCC-hhHHHhcCcHHHHHHhccC---------Cc-chHHHHHHHHHHh
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYN-LSAVLDN-ARPMVSNGVVHTLLKLCSM---------KE-RLSEKSLATLGNL 265 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~n-~~~iv~~G~v~~Lv~lL~~---------~~-~~~~~a~~~L~~L 265 (429)
....+++.+.++... . ..+.-|.- |-..+.. ...+++.||+..|+.+|.. .+ .....++.+|..|
T Consensus 67 ~p~~~i~~L~~~~~~-~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPST-S--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT--H-H--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCcc-H--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 345566666665441 1 12222221 1122222 3678889999999998852 12 5677889999999
Q ss_pred hCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 266 VVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 266 a~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
..+..|...+.+..+++..|+..|. +.+..++..+..+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~-s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLD-SPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999998888889999998 788999999999999988
No 137
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.21 E-value=2.4 Score=42.41 Aligned_cols=239 Identities=15% Similarity=0.124 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.+.+.-++..|.++ ....|+.++-.|..-+. ++..|..+...|.+..++..+.. ++..+--.++.++..+-..+..+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 34577788888844 45777888888887775 67899999999999999999944 33324444444444444333234
Q ss_pred HHHHHhcCccchhhhhcc--CC-C---HH----------HHHHHHHHHHHhhccCC---CccccccCCcHHHHHHhhhcC
Q 014196 149 KAIMVEAGILTKLPKNVD--AV-D---ES----------TRHEFGELLLSLSSLAN---THIPLSSSEILPFLVGILESG 209 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~--~~-~---~~----------~~~~aa~~L~~Ls~~~~---~~~~i~~~g~i~~Lv~lL~~~ 209 (429)
-..+.+.+.+..+..++. .. + .. ..+.....+..+-.... ..... .-
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l 164 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPP--------------EL 164 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCc--------------cc
Confidence 444445666666677776 11 0 00 00000111111110000 00000 00
Q ss_pred CcHHHHHHHHHHHHHhc--------------c-CCCChhHHHhcCcHHHHHHhccC------------C----c-chHHH
Q 014196 210 SSVETKELCIGALYNLS--------------A-VLDNARPMVSNGVVHTLLKLCSM------------K----E-RLSEK 257 (429)
Q Consensus 210 ~~~~~~~~A~~aL~nLs--------------~-~~~n~~~iv~~G~v~~Lv~lL~~------------~----~-~~~~~ 257 (429)
+ -+.-|+.+|-.++ . .+..+..+.+.|++..+++++.+ . + ...+.
T Consensus 165 s---p~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 241 (361)
T PF07814_consen 165 S---PQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLER 241 (361)
T ss_pred c---cccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHH
Confidence 0 1112333333331 1 12245778888999999988741 0 1 45678
Q ss_pred HHHHHHHhhC-ChhcHHHHhcCCC--ChHHHHHhccc--CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHH
Q 014196 258 SLATLGNLVV-TSTGKKAMEDSPL--VPESLIEILTW--EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHV 327 (429)
Q Consensus 258 a~~~L~~La~-~~e~~~~i~~~~~--i~~~Lv~~L~~--~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~ 327 (429)
|+.+|.+.+. +.+++........ .+..+..++.. .........++.++.|+.+.+++.++.+...++...
T Consensus 242 cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~ 316 (361)
T PF07814_consen 242 CLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQ 316 (361)
T ss_pred HHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccc
Confidence 9999998776 5666666655432 22122222220 111223567888888998888777777766554433
No 138
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.13 E-value=0.6 Score=43.24 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCC
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEE 293 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~ 293 (429)
-++.|+.+|+.||..+.|...++..+-++.+ |+- ...|+++|....
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRl-----------E~l-----------------------~~~L~r~l~~~e 185 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRL-----------ERL-----------------------FHTLVRLLGMRE 185 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHH-----------HHH-----------------------HHHHHHHhcccc
Confidence 4778999999999999998877766654332 111 125677776567
Q ss_pred ChhHHHHHHHHHHHHhhCCHHHH-HHHHhCCchHHHHHHhhcCCHHHHHH
Q 014196 294 KPKCQELSAYILMILAHQSSEQR-DKMAKSGIVHVSLQLALLGSPLAQRR 342 (429)
Q Consensus 294 s~~~~e~A~~~L~~L~~~~~~~~-~~i~~~G~v~~L~~ll~~~~~~~k~~ 342 (429)
++..+|.|+.+|.++|..++... ....+.+.|..|+..+..+...++..
T Consensus 186 ~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 186 DQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNAHQV 235 (257)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999877655 55556799999999998765444433
No 139
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.93 E-value=0.73 Score=48.02 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=128.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCC--chHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc---CCCc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTY--TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL---ANTH 190 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~--~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~---~~~~ 190 (429)
|...+.+|++..+.+++.|+.....|+.--. ..-..+.+.|.| |..-|....+++.-....+++.+.+. +..+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 4445668888889999999887777653210 113455566765 55555555566655555555555433 3344
Q ss_pred cccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhc-CcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 191 IPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 191 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
+.| .|.+|.|..+|++... ++..+....+..+|.......-..|= -+.--|+++|+... ++++.|..+++-++.-
T Consensus 684 pPi--~~ilP~ltPILrnkh~-Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 684 PPI--SGILPSLTPILRNKHQ-KVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred Cch--hhccccccHhhhhhhH-HHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 454 6899999999999886 78888888888888765443222221 22334677776554 8888888888877651
Q ss_pred hhcHHHHhcCCCChHHHHHhcccCC---ChhHHHHHHHHHHHHhh---------CCHHHHHHHHhCCchHHHHHHhhcCC
Q 014196 269 STGKKAMEDSPLVPESLIEILTWEE---KPKCQELSAYILMILAH---------QSSEQRDKMAKSGIVHVSLQLALLGS 336 (429)
Q Consensus 269 ~e~~~~i~~~~~i~~~Lv~~L~~~~---s~~~~e~A~~~L~~L~~---------~~~~~~~~i~~~G~v~~L~~ll~~~~ 336 (429)
|.-+. +...|+.-|. .. ...+...|+++....|. .+.+.-+.-++.|++..+.-+.+.-.
T Consensus 761 ------iGPqd-vL~~LlnnLk-vqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 761 ------IGPQD-VLDILLNNLK-VQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred ------cCHHH-HHHHHHhcch-HHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 11111 1113333332 11 11222344455544442 12233445667788887777776544
Q ss_pred HHHHHHHHHHHHHHHh
Q 014196 337 PLAQRRASKLLQWFKD 352 (429)
Q Consensus 337 ~~~k~~A~~lL~~l~~ 352 (429)
...++..-.++-++.|
T Consensus 833 ~~s~dYvy~itPlleD 848 (975)
T COG5181 833 QASLDYVYSITPLLED 848 (975)
T ss_pred HHHHHHHHHhhHHHHh
Confidence 4445555555555554
No 140
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=2.4 Score=45.47 Aligned_cols=251 Identities=14% Similarity=0.121 Sum_probs=139.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH--
Q 014196 75 QKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM-- 152 (429)
Q Consensus 75 ~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i-- 152 (429)
+.+=..|.+....+..+|+.++..+...++. .+.. ++..|-.+|.++.+.+|-+|..+|..+|...+ .+...
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P-~~v~~cN 321 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP-QAVTVCN 321 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC-ccccccc
Confidence 3444455555677888899999888765432 2222 67788888899999999999999999875542 21111
Q ss_pred ------H-hcC---ccchhhhhccCCCHHHH----HHHHHHHHHhhccCCCccccc-------------cCCcHHHHHHh
Q 014196 153 ------V-EAG---ILTKLPKNVDAVDESTR----HEFGELLLSLSSLANTHIPLS-------------SSEILPFLVGI 205 (429)
Q Consensus 153 ------v-~~G---~i~~Lv~lL~~~~~~~~----~~aa~~L~~Ls~~~~~~~~i~-------------~~g~i~~Lv~l 205 (429)
+ +.+ +-..+..+|..+..+.. ...+....+++ ++.+..+. ..+.+..|..+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 111 12223444544443322 22334444444 12222221 24556667777
Q ss_pred hhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhC-Ch---hcHHHHhcCCC
Q 014196 206 LESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVV-TS---TGKKAMEDSPL 280 (429)
Q Consensus 206 L~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~-~~---e~~~~i~~~~~ 280 (429)
|+....-+-|++...++..+.. .++.+.. ++..|.+.+.|+ +...-+..+|..|-. +| .--..|.
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc-e~~~i~~rILhlLG~EgP~a~~Pskyir---- 469 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC-EFTQIAVRILHLLGKEGPKAPNPSKYIR---- 469 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc-cchHHHHHHHHHHhccCCCCCCcchhhH----
Confidence 7653322556666666665554 4444432 344566666666 555555666655433 11 1111111
Q ss_pred ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 281 VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 281 i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.+...+- -.+...+-.|+.+|..+..+++..+. -+.-.|..++.+..+.++++|...|..+.+
T Consensus 470 ---~iyNRvi-LEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 ---FIYNRVI-LENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred ---HHhhhhh-hhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 1111110 13556677788888877755443333 234556677778889999999999998884
No 141
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.89 E-value=0.7 Score=36.85 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhchHH-HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHh--cCccchhhhhc
Q 014196 89 KEMAAKEIEKLAKEDVKI-KKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE--AGILTKLPKNV 165 (429)
Q Consensus 89 ~~~Aa~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~--~G~i~~Lv~lL 165 (429)
|..++..|...+..-+.. ...+ .-.+++++.++.+.|..+|..|+.+|.|++... +..+.. ...++.|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 445555666554322221 1122 235899999999999999999999999998764 333332 35666777777
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 014196 166 DAVDESTRHEFGELLLSL 183 (429)
Q Consensus 166 ~~~~~~~~~~aa~~L~~L 183 (429)
..++..++ .+|..|-.|
T Consensus 78 ~D~d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 78 ADPDENVR-SAAELLDRL 94 (97)
T ss_pred cCCchhHH-HHHHHHHHH
Confidence 77776655 444555443
No 142
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=4.5 Score=43.37 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
....+.+|+..+..|.+.|+-.-..+.+.++..|... .+++..++.=..++++.++..|+..+..+-.+. -..
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~--i~e 120 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK--ITE 120 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH--HHH
Confidence 4556788888888788887777778888887666421 245666666667788999888887776554432 122
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
. ...+|..+++..++.+|..++.....+- +.+.....+.|.++.|..++.+.++ .+..+|+.+|..+...+.
T Consensus 121 y-----~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p-~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 Y-----LCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNP-MVVANALAALSEIHESHP 192 (734)
T ss_pred H-----HHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCc-hHHHHHHHHHHHHHHhCC
Confidence 2 3567888898888888887776655554 2344555588999999999997777 688899999999986544
Q ss_pred Ch-hHHHhcCcHHHHHHhccCCcchHHHH-HHHHHHhhCC-hh---cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 231 NA-RPMVSNGVVHTLLKLCSMKERLSEKS-LATLGNLVVT-ST---GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 231 n~-~~iv~~G~v~~Lv~lL~~~~~~~~~a-~~~L~~La~~-~e---~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
+. ..-...-.+..++..+. +..|.+ +.+|..++.. +. ....|.+ .+...|. +.++.+.-.++.+
T Consensus 193 ~~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~------r~~p~Lq-h~n~avvlsavKv 262 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDSREAEDICE------RLTPRLQ-HANSAVVLSAVKV 262 (734)
T ss_pred CCCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhHHHHHH------Hhhhhhc-cCCcceEeehHHH
Confidence 31 11111122333344343 333433 3344455541 21 2223332 3444555 6677777778888
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHH
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRR 342 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~ 342 (429)
++.+...-.. .....-...-++|+.++...+ ..+--
T Consensus 263 ~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyv 298 (734)
T KOG1061|consen 263 ILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYV 298 (734)
T ss_pred HHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHH
Confidence 8876653223 333344456788888887765 44433
No 143
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.71 E-value=1.2 Score=39.54 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHh
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVST---------EVIGRRRAAIKALIQL 141 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s---------~~~~~~~~A~~aL~nL 141 (429)
.....+++.|.++.... ..+..|+..-+..+ .--+.|++.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34566788887754332 45555554444333 334667788999999998863 3457888899999888
Q ss_pred ccCCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHHHHhh
Q 014196 142 ANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSLS 184 (429)
Q Consensus 142 a~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 184 (429)
.... .....++ ..+++..|+.+|.+.+..++..+..+|..+|
T Consensus 144 ~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8775 4566666 5789999999999988999988888887765
No 144
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.50 E-value=1.6 Score=44.95 Aligned_cols=147 Identities=20% Similarity=0.134 Sum_probs=100.7
Q ss_pred hhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCc---HHHHHHHHHHHHHhccCCCChhHHHhc
Q 014196 162 PKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS---VETKELCIGALYNLSAVLDNARPMVSN 238 (429)
Q Consensus 162 v~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~~ 238 (429)
..++.++....+..+...|..++.+......+....++..|.+++.+|+. ..+...+++++..+-.+.-.-...+..
T Consensus 89 ~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~ 168 (713)
T KOG2999|consen 89 MEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSN 168 (713)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeeccc
Confidence 45566777777777666777777666555566677889999999998754 345666777777776665544555665
Q ss_pred CcHHHHHHhccCC--c-chHHHHHHHHHHhhCChh-cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 239 GVVHTLLKLCSMK--E-RLSEKSLATLGNLVVTST-GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 239 G~v~~Lv~lL~~~--~-~~~~~a~~~L~~La~~~e-~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
..|.....+..-. + .+-..|+..|.+++.+.. .++-+.++ .-+..|+..+. .++...+..|...+-.+-.
T Consensus 169 ~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~ee-v~i~~li~hlq-~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 169 DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEE-VPIETLIRHLQ-VSNQRIQTCAIALLNALFR 242 (713)
T ss_pred HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhc-CcHHHHHHHHH-hcchHHHHHHHHHHHHHHh
Confidence 5666666655422 3 778899999999988655 55555554 44457888887 5777777777766665554
No 145
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.37 E-value=5 Score=39.16 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=97.8
Q ss_pred ccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC---CCChhHHHhcC
Q 014196 165 VDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLSAV---LDNARPMVSNG 239 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~---~~n~~~iv~~G 239 (429)
+.......|+.+...+.++-...-....+. ....+..+.+.++.|.. +-+.-|+.++.-|+.. ......+.+ .
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~ 129 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFE-E 129 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHH-H
Confidence 334446677777666555543221112222 23457778888888876 3455577777766654 234445543 6
Q ss_pred cHHHHHHhccCCc---chHHHHHHHHHHhh---C-ChhcHHHHhcC-CCChHHHHHhcccC---------CChhHHHHHH
Q 014196 240 VVHTLLKLCSMKE---RLSEKSLATLGNLV---V-TSTGKKAMEDS-PLVPESLIEILTWE---------EKPKCQELSA 302 (429)
Q Consensus 240 ~v~~Lv~lL~~~~---~~~~~a~~~L~~La---~-~~e~~~~i~~~-~~i~~~Lv~~L~~~---------~s~~~~e~A~ 302 (429)
..|+|...+.|.+ ..+..|+.+|.-++ . .++......+. .++ ....++... +++...-.|+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~i--f~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESI--FLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH--HHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 7888888888764 33344554555433 2 22222211111 111 111122211 1233444444
Q ss_pred HHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 303 YILMILAHQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 303 ~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
.+-..|... +........ ...+|.|..+|.+.+..+|..|...|-.+-+.
T Consensus 208 ~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 443344432 222222222 34589999999999999999999988777653
No 146
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.73 E-value=19 Score=37.72 Aligned_cols=229 Identities=12% Similarity=0.097 Sum_probs=110.2
Q ss_pred HHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHH
Q 014196 94 KEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173 (429)
Q Consensus 94 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~ 173 (429)
+.+..+.+++++.+.++ .|.|-.-|++.-..++-.++.++..++..+ - ....++ .+|..|-.+|.++....|
T Consensus 249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v-~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 249 RATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN-V-GSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-c-CHHHHH-HHHHHHHHHHhcchHHHH
Confidence 33444555565555554 455556666655677888888887777553 1 122222 234455566777777778
Q ss_pred HHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcc
Q 014196 174 HEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKER 253 (429)
Q Consensus 174 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~ 253 (429)
-.|..+|-.|+.....+..... +-+-.++.+.+. .+...|..+|..-- .+++..+++. .|+..+.=++| .
T Consensus 321 FsA~Riln~lam~~P~kv~vcN----~evEsLIsd~Nr-~IstyAITtLLKTG-t~e~idrLv~--~I~sfvhD~SD--~ 390 (898)
T COG5240 321 FSAMRILNQLAMKYPQKVSVCN----KEVESLISDENR-TISTYAITTLLKTG-TEETIDRLVN--LIPSFVHDMSD--G 390 (898)
T ss_pred HHHHHHHHHHHhhCCceeeecC----hhHHHHhhcccc-cchHHHHHHHHHcC-chhhHHHHHH--HHHHHHHhhcc--C
Confidence 8888899999876544433322 122223333332 23344444443311 2333333321 22223222222 3
Q ss_pred hHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHh
Q 014196 254 LSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLA 332 (429)
Q Consensus 254 ~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll 332 (429)
...-+..++..|+. .|.-+..+.+ -|...|...|.-+-+..++.++..+..+.|+.++.+ +..|++..
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~l~------FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fI 459 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSYLD------FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFI 459 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHHHH------HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHH
Confidence 33344444555544 3443443333 222222223444555555555555555544444433 33444444
Q ss_pred hcCCHHHHHHHHHHHHHHHhc
Q 014196 333 LLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 333 ~~~~~~~k~~A~~lL~~l~~~ 353 (429)
.+..- -+-+.++|+.|++.
T Consensus 460 EDcey--~~I~vrIL~iLG~E 478 (898)
T COG5240 460 EDCEY--HQITVRILGILGRE 478 (898)
T ss_pred hhcch--hHHHHHHHHHhccc
Confidence 44321 23455566666653
No 147
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=23 Score=38.35 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCH-----------------HHHHHHHHHHHHhccCCCc
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVI-----------------GRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~-----------------~~~~~A~~aL~nLa~~~~~ 147 (429)
++..|..-+..|+..+..+|.-+... |.-+..+|.+.++ .+...|+.++..|.....+
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 34455555566666665555444333 5556777776554 4444455555555433223
Q ss_pred hH-HHHHh--------------cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhc----
Q 014196 148 NK-AIMVE--------------AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILES---- 208 (429)
Q Consensus 148 nk-~~iv~--------------~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---- 208 (429)
|. ..|+. .|.+--++++|.+++.+.+..+..+...|... --+.-++.+|+.
T Consensus 294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss----------rNvediv~~Lkke~~k 363 (948)
T KOG1058|consen 294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS----------RNVEDIVQFLKKEVMK 363 (948)
T ss_pred cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh----------ccHHHHHHHHHHHHHh
Confidence 32 22221 12222223444445555555555544444422 224445555532
Q ss_pred ------CCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhh-CChhcHHHHhcCC
Q 014196 209 ------GSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV-VTSTGKKAMEDSP 279 (429)
Q Consensus 209 ------~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La-~~~e~~~~i~~~~ 279 (429)
.+..+-++.-..++...+.. ++ +.+.+|+.|++.+.|.. ......+..+.+.- ..|..|..|..
T Consensus 364 T~~~e~d~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-- 436 (948)
T KOG1058|consen 364 THNEESDDNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-- 436 (948)
T ss_pred ccccccccchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH--
Confidence 11113355566777766642 22 23567899999998763 33333444444333 36777777665
Q ss_pred CChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH
Q 014196 280 LVPESLIEILTWEEKPKCQELSAYILMILAHQSS 313 (429)
Q Consensus 280 ~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~ 313 (429)
.|++-+..-.+...-+.|+++++.-|....
T Consensus 437 ----~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 437 ----KLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ----HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 344443322455566677788877776544
No 148
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.47 E-value=1.9 Score=40.64 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=78.8
Q ss_pred chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHH
Q 014196 253 RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQL 331 (429)
Q Consensus 253 ~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~l 331 (429)
.....|+.+|.-++- +|..|..+.+..++- .|+++|.....+..+-.++.+|..+...++.+.+...+.|++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~-lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNME-LLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHH-HHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 345567788887666 899999998877775 999999635678888889999988888888888899999999999999
Q ss_pred hhcC--CHHHHHHHHHH-HHHHHh
Q 014196 332 ALLG--SPLAQRRASKL-LQWFKD 352 (429)
Q Consensus 332 l~~~--~~~~k~~A~~l-L~~l~~ 352 (429)
+++. +..+|-+.... +-.+..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 9985 56788888874 444443
No 149
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=11 Score=40.26 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV--IGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~--~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+..+-+.|.+.|+....-|+..+.++... +++..+... |+ .+|.+++ .-++..|+.+|..|-..+++
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~D--I~---KlLvS~~~~~~vkqkaALclL~L~r~spD--- 181 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFADD--IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD--- 181 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhhh--hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---
Confidence 345555666677777777777777777542 345554432 44 5666654 45778888888887665432
Q ss_pred HHHhcCccchhhhhccCC
Q 014196 151 IMVEAGILTKLPKNVDAV 168 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~ 168 (429)
.+-..+....++.+|...
T Consensus 182 l~~~~~W~~riv~LL~D~ 199 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQ 199 (938)
T ss_pred ccChhhHHHHHHHHhCcc
Confidence 111123444455555443
No 150
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=26 Score=38.07 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhh
Q 014196 83 FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLP 162 (429)
Q Consensus 83 ~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv 162 (429)
...+.++..||.+|-.|-.-+++.+..+.+ .+=.+|.+.++-+.-.|+.|.-.++-+ +-.+. ++-...|.
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evCPe----rldLI-HknyrklC 223 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVCPE----RLDLI-HKNYRKLC 223 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhchh----HHHHh-hHHHHHHH
Confidence 457889999999999887777776666544 344567777888888888877766633 22222 12233344
Q ss_pred hhccCCCHHHHHHHHHHHHHhhccC------------C-------------CccccccCCcHHHHH----HhhhcCCcHH
Q 014196 163 KNVDAVDESTRHEFGELLLSLSSLA------------N-------------THIPLSSSEILPFLV----GILESGSSVE 213 (429)
Q Consensus 163 ~lL~~~~~~~~~~aa~~L~~Ls~~~------------~-------------~~~~i~~~g~i~~Lv----~lL~~~~~~~ 213 (429)
.+|-..+.-.+......|..-+... + .+..+....-+..|+ .+|.+.++ .
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~-s 302 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP-S 302 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc-H
Confidence 4443333222222222222111110 0 011111111122222 34455565 6
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHH
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGN 264 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~ 264 (429)
+..+++.+.|.++...++ ..++.+|+.+|..+.+++.-.+..+..
T Consensus 303 VVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIAT 347 (968)
T ss_pred HHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 778888999999854322 245778888888664444433333333
No 151
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.80 E-value=1.7 Score=38.64 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhh
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKN 164 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~l 164 (429)
++..|..++..+..++..-+.. ++ ..+|.+..+|.++++.+|..|+.+|..|...+- -|.. ...+..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-ik~k---~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-IKVK---GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-eeeh---hhhhHHHHHH
Confidence 4678888999999988765532 22 238899999999999999999999999987642 2221 1122556777
Q ss_pred ccCCCHHHHHHHHHHHHHhhcc
Q 014196 165 VDAVDESTRHEFGELLLSLSSL 186 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~ 186 (429)
+...+++.+..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888744
No 152
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.30 E-value=8.3 Score=42.16 Aligned_cols=331 Identities=15% Similarity=0.104 Sum_probs=171.3
Q ss_pred cchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHH
Q 014196 39 KSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQ 117 (429)
Q Consensus 39 PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~ 117 (429)
|+...|.++..||.... .. ..+.. ....-++.....+.....+.+.+++.....++.. +...+..+....++|
T Consensus 328 ~~~~v~~~~~~~~~~L~--~~-~~~~~---~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp 401 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELS--SA-VGPSA---TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP 401 (759)
T ss_pred hhHHHHHHHhhhhhhHH--HH-hcccc---CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence 77888888888886431 10 11110 0111245556666665566666677666666642 223455666666688
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccch----hhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 118 MLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTK----LPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 118 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~----Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
.+-.+..+.+..++.+.+....+++--.. ....++. +...++....+++.+... .++........+
T Consensus 402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-------k~~ti~~llp~~~~~l~de~~~V~lnli~---~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 402 EVQVLVLDNALHVRSALASVITGLSPILP-------KERTISELLPLLIGNLKDEDPIVRLNLID---KLSLLEEVNDVI 471 (759)
T ss_pred HHHHHHhcccchHHHHHhccccccCccCC-------cCcCccccChhhhhhcchhhHHHHHhhHH---HHHHHHhccCcc
Confidence 88888888888888877766666543321 2222222 222333333444444332 233222222333
Q ss_pred c----cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 194 S----SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 194 ~----~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
+ ....+|.++.+-..... .++......+..++.... ..+.+.-.-+.+..-+.+.. .+++.|+..|..++..
T Consensus 472 g~~~~s~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~ 548 (759)
T KOG0211|consen 472 GISTVSNSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVET 548 (759)
T ss_pred cchhhhhhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Confidence 3 45667777777665543 566666677766665432 22222222222223343433 7888888888777652
Q ss_pred hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 269 STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 269 ~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
-....... .-++ .+..... .++-..+...+.++..++. -.-+.+..+-.+|.+..+..+..+.+|-+++..|+
T Consensus 549 ~G~~w~~~--~~i~-k~L~~~~-q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~ 621 (759)
T KOG0211|consen 549 FGSEWARL--EEIP-KLLAMDL-QDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLP 621 (759)
T ss_pred hCcchhHH--HhhH-HHHHHhc-CcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence 21111111 1233 3333333 2334444444444443332 12223444456899999999999999999999888
Q ss_pred HHHhccccCCCC-CCCCCccccccCCCCChhhhHHHHHHHHHHHHHHHHH
Q 014196 349 WFKDERQAKMGP-HSGPQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHK 397 (429)
Q Consensus 349 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~ 397 (429)
.+...-...... ...|... ....+.+-|.+-.+..|...+-.-.++.
T Consensus 622 ~i~~~L~~~~~~~~v~pll~--~L~~d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 622 KILKLLDESVRDEEVLPLLE--TLSSDQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred HHHhhcchHHHHHHHHHHHH--HhccCcccchhHHHHHHHHHHHHHHHhh
Confidence 777532100000 0011111 1122225556666666666555544444
No 153
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=5.4 Score=44.80 Aligned_cols=213 Identities=12% Similarity=0.126 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHhc--CccchhhhhccCCCHHHHHHHHH---HHHHhhccCCCccccccCCcHH
Q 014196 126 EVIGRRRAAIKALIQLANGTYTNKAIMVEA--GILTKLPKNVDAVDESTRHEFGE---LLLSLSSLANTHIPLSSSEILP 200 (429)
Q Consensus 126 ~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~--G~i~~Lv~lL~~~~~~~~~~aa~---~L~~Ls~~~~~~~~i~~~g~i~ 200 (429)
.+..+|..+-..|..++... .......+. .....|..-+++.....+..... .|..+.. .++...+ ...||
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI--PKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH--HHHHH
Confidence 46788999988888887773 222222111 11122233334434444444333 3333332 1222222 11233
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcC------cHHHHHHhccCC---cchHHHHHHHHHHhhCChhc
Q 014196 201 FLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNG------VVHTLLKLCSMK---ERLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 201 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G------~v~~Lv~lL~~~---~~~~~~a~~~L~~La~~~e~ 271 (429)
-++=.++..+. ..++.|..+|..++. .....+.| .|...+..+... +.....+.. |..+...-..
T Consensus 742 EvIL~~Ke~n~-~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e 815 (1176)
T KOG1248|consen 742 EVILSLKEVNV-KARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQE 815 (1176)
T ss_pred HHHHhcccccH-HHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHH
Confidence 33333344554 689999999999884 22222222 444444444322 222222222 2222111001
Q ss_pred HHHHhcCCC---ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 272 KKAMEDSPL---VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 272 ~~~i~~~~~---i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
...+.+.+- ++..+.-+|. ..++.....|++.+..++..-++..-.--..-++|.++.++++++-+.+.+..-+|.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111111111 2223344555 688889999999988877654433222222346788888888877777777665554
Q ss_pred H
Q 014196 349 W 349 (429)
Q Consensus 349 ~ 349 (429)
.
T Consensus 895 k 895 (1176)
T KOG1248|consen 895 K 895 (1176)
T ss_pred H
Confidence 3
No 154
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.25 E-value=15 Score=35.87 Aligned_cols=193 Identities=17% Similarity=0.127 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC--CCch
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANG--TYTN 148 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~n 148 (429)
.+...+..|.......|..++..|..+..+... -..+.+ .-.++.+...++.+..+-+..|+.++.-++.. ....
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 477778888877788999999999987755432 222222 23567788888887766666666666555544 2234
Q ss_pred HHHHHhcCccchhhhhccCCC--HHHHHHHHHHHHHhhccCCC-ccccc-cCCcHH--HHHHhhhc-CC--------cHH
Q 014196 149 KAIMVEAGILTKLPKNVDAVD--ESTRHEFGELLLSLSSLANT-HIPLS-SSEILP--FLVGILES-GS--------SVE 213 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~~~-~~~i~-~~g~i~--~Lv~lL~~-~~--------~~~ 213 (429)
...+.+ ...|.|..++.... ...|..++.+|.-++..... -..+. -...+. .....++. +. ...
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 555655 46677788877554 34445555455544432211 11110 001122 11111221 11 124
Q ss_pred HHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHH---HHHHHhhC
Q 014196 214 TKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSL---ATLGNLVV 267 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~---~~L~~La~ 267 (429)
+...|+.+-.-|... +.....-.-...+|.|..+|...+ .++-.|- ++|+++..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 566666555545443 322211122457899999998766 6655444 44444444
No 155
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.05 E-value=7.6 Score=33.12 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=74.4
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hHH
Q 014196 28 RRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VKI 106 (429)
Q Consensus 28 T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~~ 106 (429)
|...+. .||.+ +|-+-|.... ..+ ......+..+.++|.++++.++..|+..|..+.+.. ...
T Consensus 10 T~~~l~----~~dw~---~ileicD~In-----~~~----~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~f 73 (139)
T cd03567 10 TNPSNR----EEDWE---AIQAFCEQIN-----KEP----EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERF 73 (139)
T ss_pred cCccCC----CCCHH---HHHHHHHHHH-----cCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 444444 48887 5777776431 111 123567889999999999999999999999888743 457
Q ss_pred HHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhcc
Q 014196 107 KKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 107 r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~ 143 (429)
...+...+++.-|+.++.. .++.+++..+..+...+.
T Consensus 74 h~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 74 HSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 7888888999999999963 468899998888877753
No 156
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.77 E-value=0.5 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.4
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
+|.+++++.++++ ++|..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~-~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSP-EVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCH-HHHHHHHHHHHHHHh
Confidence 7899999999987 899999999999875
No 157
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.36 E-value=10 Score=38.20 Aligned_cols=186 Identities=12% Similarity=0.134 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCC------------------------------HHHHHHHHHHHHH-
Q 014196 92 AAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV------------------------------IGRRRAAIKALIQ- 140 (429)
Q Consensus 92 Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~------------------------------~~~~~~A~~aL~n- 140 (429)
|+..|..+....+..-..+.+.||+..+++.|+.+- +--|...+..|.+
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 555566666555555667777888888877664210 0112333333333
Q ss_pred ---hcc-CC--CchHHHHHh-cCccchhhhhccCCC---HHHHHHHHHHHHHhhccCCCc-cccccCCcHHHHHHhhh-c
Q 014196 141 ---LAN-GT--YTNKAIMVE-AGILTKLPKNVDAVD---ESTRHEFGELLLSLSSLANTH-IPLSSSEILPFLVGILE-S 208 (429)
Q Consensus 141 ---La~-~~--~~nk~~iv~-~G~i~~Lv~lL~~~~---~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~-~ 208 (429)
+.. +. .+.-..+++ ...+..|-.+++... ..+-..|+.++..+-.++... ..+.++|.++.+++-+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 233 11 112223444 333444455555443 444555667777776665443 34558999999999888 4
Q ss_pred CC--cHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc--------chHHHHHHHHHHhhC-ChhcHHHHhc
Q 014196 209 GS--SVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE--------RLSEKSLATLGNLVV-TSTGKKAMED 277 (429)
Q Consensus 209 ~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~--------~~~~~a~~~L~~La~-~~e~~~~i~~ 277 (429)
+- +.++....-.+|..||-+....+.+.+.+.++.+++++.+++ +.....-..+.+|.. +|..|..+.+
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 42 224555455778888999999999999999999999987642 122222233445555 4666665554
No 158
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=11 Score=40.48 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCcccccc
Q 014196 117 QMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSS 195 (429)
Q Consensus 117 ~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~ 195 (429)
+-++.||.+.-+-++..|+.+|..+...- -+.+. -.+|.|+.-|..+++.++..|+..++.|+.-+ ++--.+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY---PeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY---PEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-- 219 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhh---hHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc--
Confidence 45688899988999999999998876542 22332 35788999999999999999999999999643 444333
Q ss_pred CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 196 SEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 196 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
-|.+.++|...+..=+.-..+....+|+-
T Consensus 220 ---AP~ffkllttSsNNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 220 ---APLFYKLLVTSSNNWVLIKLLKLFAALTP 248 (877)
T ss_pred ---cHHHHHHHhccCCCeehHHHHHHHhhccc
Confidence 47777777654321112224444445553
No 159
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.03 E-value=8.9 Score=43.37 Aligned_cols=228 Identities=15% Similarity=0.120 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh---hhc-hHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHhccC---
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLA---KED-VKIKKLMAELGVIQMLVSMVSTEV-IGRRRAAIKALIQLANG--- 144 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La---~~~-~~~r~~i~~~G~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~--- 144 (429)
.+|-+|..+..+...+|..|+..|..+. ++- +.+...+.| =.+|.|-.++.+.+ ..++-.-+..|..||..
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 4677888888888889988888887654 222 223333333 34677777777633 33333333333333311
Q ss_pred --------------CCchHHHHHh------cC----ccc-hhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCc
Q 014196 145 --------------TYTNKAIMVE------AG----ILT-KLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEI 198 (429)
Q Consensus 145 --------------~~~nk~~iv~------~G----~i~-~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~ 198 (429)
++.|-+...+ .+ .|. ....++...++-+|+.....|.-||.+- +-+ .+.=.
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~i 618 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVI 618 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccch
Confidence 1111100000 00 111 1223344444445554444555555321 100 02235
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
++.|...|.+.+. .++..=...+..+|..-. .+-++.+.+|.|..-|.|.+ .+..+|+..|..|++..-.++..+-
T Consensus 619 LshLiTfLNDkDw-~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~ 695 (1431)
T KOG1240|consen 619 LSHLITFLNDKDW-RLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK 695 (1431)
T ss_pred HHHHHHHhcCccH-HHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH
Confidence 7899999998875 666544445554444211 23367788999999999986 7899999999999886544443221
Q ss_pred CCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 278 SPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 278 ~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
. +.....-+|- +.+...+..+++++..+..
T Consensus 696 ~--i~~~v~PlL~-hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 696 D--ILQDVLPLLC-HPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred H--HHHhhhhhee-CchHHHHHHHHHHHHHHHh
Confidence 0 1223333555 7888999999999988765
No 160
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.99 E-value=1.3 Score=47.57 Aligned_cols=152 Identities=19% Similarity=0.158 Sum_probs=102.0
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 74 LQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 74 l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
++.+...++.. ..-..-+++.++++|+..+...|..+.+.-+++.+-.++-.+++-.|.+++..+.||..++.-....+
T Consensus 543 ~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si 622 (748)
T KOG4151|consen 543 VKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSI 622 (748)
T ss_pred hhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 44444444432 12334578999999999888888888887667766666777889999999999999998874446667
Q ss_pred Hh-cCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCcc-ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 153 VE-AGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 153 v~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
++ ...++....++..........+++++.-+.... +++. ..........++.++.+++. +++...+....|+.
T Consensus 623 ~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~-~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 623 VEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDD-EIQHRGLVIILNLF 698 (748)
T ss_pred hccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchh-hhhhhhhhhhhhHH
Confidence 76 456666666665533444444455555444333 3444 23345567788888988887 78887777777644
No 161
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.86 E-value=6.7 Score=38.69 Aligned_cols=191 Identities=14% Similarity=0.089 Sum_probs=129.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHH-----HHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKK-----LMAEL--GVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~-----~i~~~--G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
.+..++..|..-+-+.++.++....++.+.....+. .+... .++..|+..-+ ++++--.+-..|+.+..+.
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhH
Confidence 467788888888889999988888888776544432 33332 34455555444 4555566667788888774
Q ss_pred CchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc------cCCcHHHHHHhhhcCCcHHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS------SSEILPFLVGILESGSSVETKELCI 219 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~------~~g~i~~Lv~lL~~~~~~~~~~~A~ 219 (429)
.....|.....+..+...++.+.-++-..|..++..+-. .++...+ -...+.....+|.+++. -+++.++
T Consensus 155 -~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt--~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY-vtkrqsl 230 (335)
T PF08569_consen 155 -SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT--RHKKLVAEFLSNNYDRFFQKYNKLLESSNY-VTKRQSL 230 (335)
T ss_dssp -HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH--SSHHHHHHHHHHTHHHHHHHHHHHCT-SSH-HHHHHHH
T ss_pred -HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCCe-EeehhhH
Confidence 456677788888889999988887777777777776532 2332222 13456788889999998 6899999
Q ss_pred HHHHHhccCCCChhHHH----hcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh
Q 014196 220 GALYNLSAVLDNARPMV----SNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS 269 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv----~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~ 269 (429)
..|..|-....|...|. +..-+..++.+|+|.+ .++-.|.-+.--.+.+|
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999999888865443 3466778888999886 78888888876555443
No 162
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.83 E-value=4.8 Score=41.65 Aligned_cols=151 Identities=17% Similarity=0.102 Sum_probs=102.5
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-----chHHHHHHHHHHhhCChhcHH
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-----RLSEKSLATLGNLVVTSTGKK 273 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-----~~~~~a~~~L~~La~~~e~~~ 273 (429)
...+.+++.+++. ..+..|+..|..++........++...++..|..++.|.+ .+...++.++..+-.+.-..-
T Consensus 85 a~~i~e~l~~~~~-~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNN-ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCc-HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567788888887 6777788999999988888888999999999999988753 333444444444332211111
Q ss_pred HHhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 274 AMEDSPLVPESLIEILTW-EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 274 ~i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
..+....+. ..+.+... .-...+-..|+..|-.+..++...++.+.++--+..|+..++.++...+..|-.++..+-
T Consensus 164 ~~~~~~fV~-~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVV-SMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHH-HHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 111112222 23333321 123345677888888888778888999999999999999999999998888887765443
No 163
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=88.42 E-value=21 Score=36.64 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=82.8
Q ss_pred CccccccCCcHHHHHHhhhcCCc------HHHHHHHHHHHHHhccCCCC--hhHHHhcCcHHHHHHhccCC---c-----
Q 014196 189 THIPLSSSEILPFLVGILESGSS------VETKELCIGALYNLSAVLDN--ARPMVSNGVVHTLLKLCSMK---E----- 252 (429)
Q Consensus 189 ~~~~i~~~g~i~~Lv~lL~~~~~------~~~~~~A~~aL~nLs~~~~n--~~~iv~~G~v~~Lv~lL~~~---~----- 252 (429)
++..+-++-+.+++-++|.+++. .-.+.-++..|.-.|..++- ...|+ ..||.|++.+... +
T Consensus 48 ~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~ 125 (698)
T KOG2611|consen 48 NKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNL 125 (698)
T ss_pred hhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhH
Confidence 55556677778999999986421 23456677788888887763 35565 4789999998632 1
Q ss_pred chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 253 ~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
.+.+.+-.+|..++.++.|.......|+++ .+.++-.-.+-...+..|..++.-..
T Consensus 126 ~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~-~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 126 IMLEDCYECLYLVATAEAGLMTLIASGGLR-VIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHhcCchH-HHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 478999999999999999999999988885 77776442343444555655555443
No 164
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.19 E-value=24 Score=33.43 Aligned_cols=199 Identities=16% Similarity=0.110 Sum_probs=108.5
Q ss_pred hcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC-
Q 014196 112 ELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN- 188 (429)
Q Consensus 112 ~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~- 188 (429)
...++|.|+..|... .+.++..|..+|.++. +. .... .+-+..+.+..++++.+-.++..+-..+.
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~-~~~~---------~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP-ESLE---------ILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch-hhHH---------HHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 356799999998765 4788999999999887 33 2222 22333444444455544444444432211
Q ss_pred -----Cccccc-------cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chH
Q 014196 189 -----THIPLS-------SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLS 255 (429)
Q Consensus 189 -----~~~~i~-------~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~ 255 (429)
..+.+. ..+-+.-|-..|.+.+.+-..+. .+++.|-... -..+|..+++-+.+.+ -++
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn~g-------~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRNIG-------TEEAINALIDGLADDSALFR 204 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhccC-------cHHHHHHHHHhcccchHHHH
Confidence 111111 22335555555544433222222 3333332211 0134556666666555 566
Q ss_pred HHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc
Q 014196 256 EKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTW-EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL 334 (429)
Q Consensus 256 ~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~ 334 (429)
..++.+++.|-. ...++.|.+.|.. ...+-++-.|+.+|+.++. ++. ++.|.+.+.+
T Consensus 205 hEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~---------~~vL~e~~~D 262 (289)
T KOG0567|consen 205 HEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDC---------VEVLKEYLGD 262 (289)
T ss_pred HHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHH---------HHHHHHHcCC
Confidence 677777776532 2233478887762 2566778888889988763 444 3445555555
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 014196 335 GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 335 ~~~~~k~~A~~lL~~l~~ 352 (429)
..+-+++.+.-.|.++-.
T Consensus 263 ~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLEY 280 (289)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 556666666666766553
No 165
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.94 E-value=5.6 Score=44.87 Aligned_cols=254 Identities=15% Similarity=0.089 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHhhhc-hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc---CCCchHHHHHhcCccchh
Q 014196 86 WEEKEMAAKEIEKLAKED-VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN---GTYTNKAIMVEAGILTKL 161 (429)
Q Consensus 86 ~~~~~~Aa~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~---~~~~nk~~iv~~G~i~~L 161 (429)
.+.|.+|+.-|+.++... .+++ =.-++|-+|.++.++...+|..|+.+|..+-. +-..+-..|.-.=.+|-|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 678889999999888632 2222 12458999999999999999999888877632 111122334434456777
Q ss_pred hhhccCC-CHHHHHHHHHHHHHhhccC------------------CCc---cccccCCcHHHH--------HHhhhcCCc
Q 014196 162 PKNVDAV-DESTRHEFGELLLSLSSLA------------------NTH---IPLSSSEILPFL--------VGILESGSS 211 (429)
Q Consensus 162 v~lL~~~-~~~~~~~aa~~L~~Ls~~~------------------~~~---~~i~~~g~i~~L--------v~lL~~~~~ 211 (429)
-.++.+. ...+|...|..|..|+... .+. ..-........| +.+|...++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 7777653 3334444444444444210 000 000000001111 111111111
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHh-cCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHH-hcCCCChHHHHHhc
Q 014196 212 VETKELCIGALYNLSAVLDNARPMVS-NGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAM-EDSPLVPESLIEIL 289 (429)
Q Consensus 212 ~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i-~~~~~i~~~Lv~~L 289 (429)
-+|+.-+..|.-||..= .+.-. .=.++.|+..|.|.+...+. +....++.-.-.-.-- ++ ..+.|.|.+-|
T Consensus 593 -~Vkr~Lle~i~~LC~FF---Gk~ksND~iLshLiTfLNDkDw~LR~--aFfdsI~gvsi~VG~rs~s-eyllPLl~Q~l 665 (1431)
T KOG1240|consen 593 -IVKRALLESIIPLCVFF---GKEKSNDVILSHLITFLNDKDWRLRG--AFFDSIVGVSIFVGWRSVS-EYLLPLLQQGL 665 (1431)
T ss_pred -HHHHHHHHHHHHHHHHh---hhcccccchHHHHHHHhcCccHHHHH--HHHhhccceEEEEeeeeHH-HHHHHHHHHhc
Confidence 23333333333333210 00001 12234444444444311111 1122222211000001 12 33444666666
Q ss_pred ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 290 TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 290 ~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
. ++.+.+-..|+++|..||.. ..-+...--.++.-..-++-..+.=++..++.++--..+.
T Consensus 666 t-D~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 666 T-DGEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred c-CcchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 6 67777778888888877753 2444433333333334444556777888888888887764
No 166
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.44 E-value=4.1 Score=34.88 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcc
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~ 143 (429)
....+..+.++|.++++.++..|+..|..+.+. .......+...+.+..|+.++.. .++.+++.++..+...+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999886 35577888889999999999974 678899999998888764
No 167
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=15 Score=41.19 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=88.6
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCcc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHI 191 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~ 191 (429)
.++++.|.+.|++.|..++-.|+..++.++...+ .. +++ .+|...+.++...+ ...=..++.+|..|+...-..+
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~-Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE-LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH-HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3678889999999999999999999999998874 22 222 23334455555444 3334456678888874331111
Q ss_pred ccccCCcHHHHHHhhhc-------CCcHHHHHHHHHHHHHhccCCC--ChhHHHhcCcHHH-HHHhccCCc-chHHHHHH
Q 014196 192 PLSSSEILPFLVGILES-------GSSVETKELCIGALYNLSAVLD--NARPMVSNGVVHT-LLKLCSMKE-RLSEKSLA 260 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~-------~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~-Lv~lL~~~~-~~~~~a~~ 260 (429)
.. -...+|.+++-|.- .....++..|+-+.|.++..-+ ....++.. ..+. |...+-|++ ..++.|.+
T Consensus 416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHH
Confidence 10 12345555554431 1112478888888888886432 22333322 2222 333456777 77888888
Q ss_pred HHHHhhC
Q 014196 261 TLGNLVV 267 (429)
Q Consensus 261 ~L~~La~ 267 (429)
++.+..+
T Consensus 494 AlqE~VG 500 (1133)
T KOG1943|consen 494 ALQENVG 500 (1133)
T ss_pred HHHHHhc
Confidence 8876654
No 168
>PRK14707 hypothetical protein; Provisional
Probab=87.12 E-value=40 Score=40.82 Aligned_cols=182 Identities=17% Similarity=0.199 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHH-HHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHH-HhccCCCChhHHHhcCcHHHHH
Q 014196 168 VDESTRHEFGELL-LSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALY-NLSAVLDNARPMVSNGVVHTLL 245 (429)
Q Consensus 168 ~~~~~~~~aa~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~-nLs~~~~n~~~iv~~G~v~~Lv 245 (429)
++...-..++.+| ..|..+++.+..+.-.|.-..|-.+-+-++...++ .|+.+|. .|..+.+-+..+ +.-.|..++
T Consensus 344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~-~aa~~LA~~l~~d~~l~~~~-~~Q~van~l 421 (2710)
T PRK14707 344 PDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCA-AAASALAEHVVDDLELRKGL-DPQGVSNAL 421 (2710)
T ss_pred CCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHH-HHHHHHHHHhccChhhhhhc-chhhHHHHH
Confidence 3333444444433 34554445555553333323333333334443344 3444444 455444444444 444455555
Q ss_pred Hhcc-CCc-chHHHHHHHHH-HhhCChhcHHHHhcCCCChHHHHHhc-ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh
Q 014196 246 KLCS-MKE-RLSEKSLATLG-NLVVTSTGKKAMEDSPLVPESLIEIL-TWEEKPKCQELSAYILMILAHQSSEQRDKMAK 321 (429)
Q Consensus 246 ~lL~-~~~-~~~~~a~~~L~-~La~~~e~~~~i~~~~~i~~~Lv~~L-~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~ 321 (429)
.-|+ -++ .+...++..|. .++...+.++++--.+ +. ..+..+ .|.+++.+.+.+-.....|++ +++.++.+--
T Consensus 422 nalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va-~~LnalSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~~~ 498 (2710)
T PRK14707 422 NALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VT-QALDALSKWPDTPICGQTASALAARLAH-ERRLRKALKP 498 (2710)
T ss_pred HHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HH-HHHHHhhcCCCChhHHHHHHHHHHHhcc-cHHHHhhcCH
Confidence 5554 455 77788888886 7778888888886543 33 344433 567888887776666666664 4667777766
Q ss_pred CCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcc
Q 014196 322 SGIVHVSLQLALLG-SPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 322 ~G~v~~L~~ll~~~-~~~~k~~A~~lL~~l~~~~ 354 (429)
.++...|-.|.+-. .+...+.+.|+-+.+...+
T Consensus 499 q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~ 532 (2710)
T PRK14707 499 QEVVIALHSLSKWPDTPICAEAASALAERVVDEL 532 (2710)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch
Confidence 67666666666654 3455566667766666543
No 169
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=59 Score=36.69 Aligned_cols=240 Identities=16% Similarity=0.097 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
..+..|+..|.+.+..++-.||+-+..++.+.|. .+++ -+|...++++.- ++...-..|+.+|..|+...= -.-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl-Llp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL-LLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC-cch
Confidence 4556677777777888889999999999998872 2332 235566665543 346677788888888876531 111
Q ss_pred HHHhcCccchhhhhccC--------CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhh-----hcCCcHHHHHH
Q 014196 151 IMVEAGILTKLPKNVDA--------VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGIL-----ESGSSVETKEL 217 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~--------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-----~~~~~~~~~~~ 217 (429)
...+ ..+|.+++-+.- ....+|..|+-++|.++..-.... + .+.+..|...| -+.+- .+++.
T Consensus 416 s~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l--~p~l~~L~s~LL~~AlFDrev-ncRRA 490 (1133)
T KOG1943|consen 416 SLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-L--KPVLQSLASALLIVALFDREV-NCRRA 490 (1133)
T ss_pred HHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-h--hHHHHHHHHHHHHHHhcCchh-hHhHH
Confidence 1111 233334333321 113455566668888875432211 1 11222222211 12233 58888
Q ss_pred HHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC---c-chHHHHHHHHH-HhhCChhcHHHHhcCCCChHHHHHhcccC
Q 014196 218 CIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---E-RLSEKSLATLG-NLVVTSTGKKAMEDSPLVPESLIEILTWE 292 (429)
Q Consensus 218 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a~~~L~-~La~~~e~~~~i~~~~~i~~~Lv~~L~~~ 292 (429)
|..|+........|. |.=++++..- . ..+.+|-..|. -++..+..+.-+.++ .+.+-+. +
T Consensus 491 AsAAlqE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~-H 555 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVC-H 555 (1133)
T ss_pred HHHHHHHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccc-c
Confidence 888887655433333 2222233211 1 33444443333 555566666666652 2222233 4
Q ss_pred CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHH
Q 014196 293 EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQ 340 (429)
Q Consensus 293 ~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k 340 (429)
=+...+|.+..+|..|+...+ .-...+.+|+|+.-...++...+
T Consensus 556 Wd~~irelaa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~~~~~r 599 (1133)
T KOG1943|consen 556 WDVKIRELAAYALHKLSLTEP----KYLADYVLPPLLDSTLSKDASMR 599 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHhhH----HhhcccchhhhhhhhcCCChHHh
Confidence 477899999999999875433 33445678888888777765443
No 170
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.63 E-value=0.99 Score=37.31 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=53.2
Q ss_pred hHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 282 PESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 282 ~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
+..|+++|..+.++....-|+.=|+.++..-|..+..+-+.|+-..+.+++.+.++.+|..|...++.+-
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3478888853345555666777777888766788888888899999999999999999999998877654
No 171
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=85.54 E-value=40 Score=37.01 Aligned_cols=175 Identities=14% Similarity=0.098 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
-...++..++.|... .+.++..++..+..+++--+ ...+..+.++.++++..++...+++.|...+.++..--+
T Consensus 234 vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~-- 308 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD-- 308 (759)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC--
Confidence 345567777777755 67888889998998887443 377778999999999998888999999888877753321
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
...=+..-..+.++...+.+....+...+...+.|+..-. ...+...-+++...+++.... +.+..+..-...++..
T Consensus 309 ~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~~~~-e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 309 DDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKDEEW-EVRYAIAKKVQKLACY 385 (759)
T ss_pred CchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcchhh-hhhHHhhcchHHHhhh
Confidence 1101223455667777777777777777777777764321 133334456777777665443 3333333333333332
Q ss_pred --CCChhHHHhcCcHHHHHHhccCCc
Q 014196 229 --LDNARPMVSNGVVHTLLKLCSMKE 252 (429)
Q Consensus 229 --~~n~~~iv~~G~v~~Lv~lL~~~~ 252 (429)
.+....+...-++|.+-.+..+..
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNA 411 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhccc
Confidence 222344444555666666666654
No 172
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=85.22 E-value=13 Score=32.95 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcH-HHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVI-QMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i-~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
..++.+...|.++++.+|..|+..|..|...+. +--.|-+ ..++.+|.++|++++..|..++..+...
T Consensus 25 ~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 25 PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999886542 1112333 6778899999999999999999999877
No 173
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.10 E-value=0.97 Score=45.83 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccC--C-Cch----HHHHHhcCccchhhhhccC---CCHHHHHHHHHHHHHhhc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANG--T-YTN----KAIMVEAGILTKLPKNVDA---VDESTRHEFGELLLSLSS 185 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~-~~n----k~~iv~~G~i~~Lv~lL~~---~~~~~~~~aa~~L~~Ls~ 185 (429)
.......|.+.....|+.++|++.|++.. + -.+ ...+. .-.+..+...-.. ....++.++..+|.|+..
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 44455556665677899999999998521 0 011 11111 1112222222111 124567778888888875
Q ss_pred cCCCcccc--c--cCCcHHHHHHhh-hcCCcHHHHHHHHHHHHHhccCCCCh-hHHH-hcCcHHHHHHhccCCc--chHH
Q 014196 186 LANTHIPL--S--SSEILPFLVGIL-ESGSSVETKELCIGALYNLSAVLDNA-RPMV-SNGVVHTLLKLCSMKE--RLSE 256 (429)
Q Consensus 186 ~~~~~~~i--~--~~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv-~~G~v~~Lv~lL~~~~--~~~~ 256 (429)
.-+.-... + ..|.+..+..-. ..+.. +++-+||-++.||-+++.-. ..+- ..-+++.|..++.+.. +++-
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~-kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAM-KVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceeccccc-ccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence 43211111 1 122222222221 12333 68999999999999887653 2222 2346788888888764 8888
Q ss_pred HHHHHHHHhhC
Q 014196 257 KSLATLGNLVV 267 (429)
Q Consensus 257 ~a~~~L~~La~ 267 (429)
+|+++|..-..
T Consensus 593 ~AA~aL~vp~~ 603 (728)
T KOG4535|consen 593 RAAAALSVPGK 603 (728)
T ss_pred hhhhhhcCCCC
Confidence 88888865444
No 174
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=84.60 E-value=3 Score=41.68 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=32.8
Q ss_pred CCcchhhhhhhhHH--HHHHHHh-ccc-cccCCCCCCCcccchh
Q 014196 3 IPSSSYMRLQFFSR--IRQFIQS-KSA-RRRQNEPNHNHEKSRT 42 (429)
Q Consensus 3 ~~~~~~~~~~TydR--Ie~W~~~-g~~-~T~~~L~~~~L~PN~~ 42 (429)
+|+-|---|.-||| ||+++.+ |++ +|++||.--+|+|=.+
T Consensus 12 ~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~ 55 (506)
T KOG0289|consen 12 EPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKV 55 (506)
T ss_pred CccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccc
Confidence 57777777899999 9999965 666 9999998778887555
No 175
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.48 E-value=67 Score=37.67 Aligned_cols=306 Identities=15% Similarity=0.115 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHh---cCccch
Q 014196 85 SWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE---AGILTK 160 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~---~G~i~~ 160 (429)
.+..|+.||+-+..+++... +.+..+.+ .||.|.+.=.++|+.+|.+ ..-++|.-..+. ..+++ ...++-
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~k--LIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~---k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKK--LIPRLYRYQYDPDKKVQDA-MTSIWNALITDS---KKVVDEYLNEILDE 1043 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHH--hhHHHhhhccCCcHHHHHH-HHHHHHHhccCh---HHHHHHHHHHHHHH
Confidence 57888999999999887542 22223322 4888888878888888775 455566544432 22222 233333
Q ss_pred hhhhccCCCHHHHHHHHHHHHHhhccCCCcccccc-CCcHHHHHHhhhcCCcHHHHH---HHHHHHHHhccC---CCCh-
Q 014196 161 LPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSS-SEILPFLVGILESGSSVETKE---LCIGALYNLSAV---LDNA- 232 (429)
Q Consensus 161 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~---~A~~aL~nLs~~---~~n~- 232 (429)
|+.-+.+....+|+.++.+|..|-...+.....-. ......+.+...+=. +.+|+ -++.+|..||.. ..|-
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK-EsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK-ESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 44444444577888888899998754433221111 112222333332211 12333 456677776642 2221
Q ss_pred -hHHHhcCcHHHHHH--hccCCcchHHHHHHHHHHhhCChhcHHHHh-cCCCChHHHHHhcccCCCh-----------hH
Q 014196 233 -RPMVSNGVVHTLLK--LCSMKERLSEKSLATLGNLVVTSTGKKAME-DSPLVPESLIEILTWEEKP-----------KC 297 (429)
Q Consensus 233 -~~iv~~G~v~~Lv~--lL~~~~~~~~~a~~~L~~La~~~e~~~~i~-~~~~i~~~Lv~~L~~~~s~-----------~~ 297 (429)
..-+-+-++|.|++ .+++-.++++-++.++..|+++... ++. -.+.++|.|++... .-.+ ..
T Consensus 1123 ~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~--~lkP~~~~LIp~ll~~~s-~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1123 KGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK--ELKPHFPKLIPLLLNAYS-ELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred cHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh--hhcchhhHHHHHHHHHcc-ccchHHHHHHHHhhhhh
Confidence 11122344555554 3322238888999999999985322 111 11223334554443 1111 11
Q ss_pred HHHHHHHHH-HHhhCCH--HHHHHH-------HhCCchHHHHHHhhcC-CHHHHHHHHHHHHHHH-hccccCCCCCCCCC
Q 014196 298 QELSAYILM-ILAHQSS--EQRDKM-------AKSGIVHVSLQLALLG-SPLAQRRASKLLQWFK-DERQAKMGPHSGPQ 365 (429)
Q Consensus 298 ~e~A~~~L~-~L~~~~~--~~~~~i-------~~~G~v~~L~~ll~~~-~~~~k~~A~~lL~~l~-~~~~~~~~~~~~~~ 365 (429)
...|+..+. +.+..++ +..... +-+..+|.++++++.+ .-.+|-.++..+..|. +.+ .++ .|.
T Consensus 1200 e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~----~em-tP~ 1274 (1702)
T KOG0915|consen 1200 ETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG----SEM-TPY 1274 (1702)
T ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc----ccc-Ccc
Confidence 222333332 1122232 111111 1124789999999876 4455666665544444 222 122 344
Q ss_pred cccc----ccCCCC-ChhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014196 366 TRRV----SIGSPV-SPREAQEGKKMMKNLVQQSLHKNLEMITRR 405 (429)
Q Consensus 366 ~~~~----~~~~~~-~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 405 (429)
++.. -.+..+ ++-.+.-..-||--+++-+-+..++.+++.
T Consensus 1275 sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4421 112222 444444455566666665555555555554
No 176
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.46 E-value=8 Score=32.59 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcC---CCHHHHHHHHHHHHHhccC
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVST---EVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~ 144 (429)
....++.+-++|+++++.++..|+..|..+.+.... ....+.....+..|+.++.. .++.++..++..+.+.+..
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999886644 67777777778889999975 4788999999998887644
No 177
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=84.13 E-value=20 Score=35.35 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=133.8
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCcc--c---cc-c-CCcHHHHHHhhhcCCcHHHHHHHHH
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHI--P---LS-S-SEILPFLVGILESGSSVETKELCIG 220 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~--~---i~-~-~g~i~~Lv~lL~~~~~~~~~~~A~~ 220 (429)
...+...|.+..|+..|...+-+.|..++.+..++-... +.+. . +. . ...+..|+.--.+. ++--.+-.
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~---dial~~g~ 145 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP---DIALNCGD 145 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST---TTHHHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc---cccchHHH
Confidence 345666788888999999999999999888877776443 2222 1 11 2 23333333333333 23344556
Q ss_pred HHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH-hhCChhcHHHHhcC--CCChHHHHHhcccCCChh
Q 014196 221 ALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN-LVVTSTGKKAMEDS--PLVPESLIEILTWEEKPK 296 (429)
Q Consensus 221 aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~-La~~~e~~~~i~~~--~~i~~~Lv~~L~~~~s~~ 296 (429)
.|.....++.-...+.....+-.+.+.+..+. ++...|..++.. |..+......+... .........+|. +++-.
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~-s~NYv 224 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE-SSNYV 224 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHH
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc-CCCeE
Confidence 66666667666678888888888989888777 999999999985 55566655555432 233335667777 78999
Q ss_pred HHHHHHHHHHHHhhC--CHHHHHHHHhC-CchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 014196 297 CQELSAYILMILAHQ--SSEQRDKMAKS-GIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 297 ~~e~A~~~L~~L~~~--~~~~~~~i~~~-G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
++..++..|..+-.. +...+..-+.. .-+..++.++++.+..+|-.|-.+.+.+-..|+
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 999999999988753 22333334432 346677788888899999999999999998665
No 178
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.42 E-value=4.2 Score=37.40 Aligned_cols=99 Identities=21% Similarity=0.150 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCC----hhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHH
Q 014196 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEK----PKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHV 327 (429)
Q Consensus 253 ~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s----~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~ 327 (429)
.-+-.++.+|.-++.+|+.+..++++ .++--|-.+|...++ +-.+-.+.+++..+... ++.+..-+..-.+||.
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 34557788888999999999999885 344345556652222 23456788888888875 5677777888899999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 328 SLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 328 L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++.++..|++..|.-|..+++.+-.
T Consensus 194 cLrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999998876653
No 179
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=83.40 E-value=8.7 Score=32.98 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=76.5
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HH
Q 014196 28 RRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KI 106 (429)
Q Consensus 28 T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~ 106 (429)
|-..+.. ||.. +|-+-|.... .. .......+..+.++|.+.++.++..|+..|..+.+... ..
T Consensus 9 Tse~l~~----~dw~---~il~icD~I~-----~~----~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 9 TDEKLTS----ENWG---LILDVCDKVK-----SD----ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred cCccCCC----cCHH---HHHHHHHHHh-----cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 4444443 6765 5777776431 11 11246778999999999999999999999999987543 46
Q ss_pred HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccC
Q 014196 107 KKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 107 r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~ 144 (429)
...+....++..|+.++.. .++.+++..+..+..++..
T Consensus 73 h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 73 HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 7788888999999999988 7889999999998888643
No 180
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=83.29 E-value=65 Score=34.63 Aligned_cols=296 Identities=13% Similarity=0.113 Sum_probs=156.6
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCC------------hhhHHHHHHHHHHhcCCCHHHHHHHHH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIE------------EDDCVLLQKSVKRLHFGSWEEKEMAAK 94 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~------------~~~~~~l~~lv~~L~~~~~~~~~~Aa~ 94 (429)
.|.-.+.++.++| +..|...|........-++. ... ..+...+-.++..|...+.+.|.+=-.
T Consensus 202 ~~~~~~~~~~~ip----k~~~~~~~k~~~~~~~~r~n-~~~~~~~~~~~~gff~n~fvd~~~fLeel~lks~~eK~~Ff~ 276 (690)
T KOG1243|consen 202 LTKTDLSNTGKIP----KALIELYCKKLGATELKRPN-KLRFILECRLLGGFFRNDFVDTLLFLEELRLKSVEEKQKFFS 276 (690)
T ss_pred CcchhhhccCccc----hhHHHHHHHHhccccccccc-hhhHHHHHHhccccccchHHHHHHHHHhcccCcHHHHHHHHH
Confidence 5677788888999 66677777654221111111 000 011222334444444445555544333
Q ss_pred HHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHH
Q 014196 95 EIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRH 174 (429)
Q Consensus 95 ~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~ 174 (429)
.|.... +..-..++..-.+|.|+..+..++ .-...+..|..+...-+ ... .+.+.+|.|+++....+..+|-
T Consensus 277 ~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld-~~e--yq~~i~p~l~kLF~~~Dr~iR~ 348 (690)
T KOG1243|consen 277 GLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLD-EEE--YQVRIIPVLLKLFKSPDRQIRL 348 (690)
T ss_pred HHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhcc-ccc--cccchhhhHHHHhcCcchHHHH
Confidence 333211 112223444445666666666555 11222333333333221 111 5567899999999888766654
Q ss_pred HHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc
Q 014196 175 EFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE 252 (429)
Q Consensus 175 ~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~ 252 (429)
. +|.++-..- .....+.+...+|.+..-+.+.++ .+++..+.++.-|+.. ..+ .+....+..+-.+-.|..
T Consensus 349 ~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~-~Lre~Tlksm~~La~kL~~~---~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 349 L---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNA-TLREQTLKSMAVLAPKLSKR---NLNGELLRYLARLQPDEH 421 (690)
T ss_pred H---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCH-HHHHHHHHHHHHHHhhhchh---hhcHHHHHHHHhhCcccc
Confidence 3 333333221 223445567788999988888877 7899898888877642 222 222233333333333332
Q ss_pred -chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHH
Q 014196 253 -RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQL 331 (429)
Q Consensus 253 -~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~l 331 (429)
+++-+..-+|..++... .+.++.+..+.+....+. +.-...+..++.+++..+..- .+.. +...++|.++-+
T Consensus 422 ~~irtntticlgki~~~l---~~~~R~~vL~~aftralk-dpf~paR~a~v~~l~at~~~~-~~~~--va~kIlp~l~pl 494 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALK-DPFVPARKAGVLALAATQEYF-DQSE--VANKILPSLVPL 494 (690)
T ss_pred Ccccccceeeeccccccc---chhhhccccchhhhhhhc-CCCCCchhhhhHHHhhccccc-chhh--hhhhcccccccc
Confidence 66666665666655431 122243444434555555 455667888888887665431 1211 222467888888
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 014196 332 ALLGSPLAQRRASKLLQW 349 (429)
Q Consensus 332 l~~~~~~~k~~A~~lL~~ 349 (429)
..+.+..++..|-..++.
T Consensus 495 ~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 495 TVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccCcccchhhHHHHHHHH
Confidence 877777777777764433
No 181
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.06 E-value=4.1 Score=32.12 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
..+...+..|.++.+..|..++..|+.+..... ...+...+++..+...|+++|+-+--+|+..|..|+...
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 457788888999888999999999999987553 112222466778888999999999999999999998665
No 182
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=82.61 E-value=45 Score=31.68 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=48.4
Q ss_pred CcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhh
Q 014196 197 EILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLV 266 (429)
Q Consensus 197 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La 266 (429)
..+-.|.++|.++.. -.+...+..|+.+-.+-+.... ...+.+.+++++|.. +....|+.+|.+..
T Consensus 188 ~~l~~Ll~lL~n~~~-w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t--~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 188 QILTFLLGLLENGPP-WLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT--DLWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHhCCcH-HHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC--ccHHHHHHHHHHHH
Confidence 345667888888776 6888888888888776554444 556789999999965 57778888886544
No 183
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=82.31 E-value=6.2 Score=29.62 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCC
Q 014196 255 SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSG 323 (429)
Q Consensus 255 ~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G 323 (429)
.+.|+.++.+++.++.|...+.+.+ +++.++++...++....|--|.++|.-++. +.+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~-iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESD-IVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcC-HHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 4678899999999999998888654 556999998756777888899999988875 466676666655
No 184
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.14 E-value=19 Score=40.65 Aligned_cols=182 Identities=18% Similarity=0.205 Sum_probs=94.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-----CCCchH
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN-----GTYTNK 149 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~-----~~~~nk 149 (429)
.+....++.+...+..++..|..+-+..+ ++...+... ||-++-+++..|...++.|..+|.++.. ++..++
T Consensus 701 ~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~--I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~ 778 (1176)
T KOG1248|consen 701 SLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL--IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP 778 (1176)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc
Confidence 33444444455666677777777665443 343333332 4444444487888889988888887762 111112
Q ss_pred -HHHHhcCccchhhhhccCC--CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhh----hcCCcHHHHHHHHHHH
Q 014196 150 -AIMVEAGILTKLPKNVDAV--DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGIL----ESGSSVETKELCIGAL 222 (429)
Q Consensus 150 -~~iv~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~A~~aL 222 (429)
.. .|...+..|..+ ..+.+..+.. |..+...-.....+.+.+.++.++.++ .+++. ++...|++.+
T Consensus 779 ~~~-----~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sr-eI~kaAI~fi 851 (1176)
T KOG1248|consen 779 ASA-----ILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSR-EIAKAAIGFI 851 (1176)
T ss_pred hHH-----HHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 11 333344444333 2233322322 222221111222233444555555544 44554 7888888888
Q ss_pred HHhcc-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhh
Q 014196 223 YNLSA-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV 266 (429)
Q Consensus 223 ~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La 266 (429)
.-++. .++-+..-.....+|.++.++.+.. .++.+.-..|..|+
T Consensus 852 kvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 852 KVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 87765 4544433333456777777777654 45555555555554
No 185
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=82.09 E-value=2.1 Score=39.72 Aligned_cols=124 Identities=16% Similarity=0.100 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhccCCC------chHHHHHh----------cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcc
Q 014196 128 IGRRRAAIKALIQLANGTY------TNKAIMVE----------AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI 191 (429)
Q Consensus 128 ~~~~~~A~~aL~nLa~~~~------~nk~~iv~----------~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 191 (429)
..++|+|+-.|.|++..-+ .-..-|.+ +.+.++++..=......-++.+..+|..|+..+.|-.
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 3578888888888874321 12222332 2233333221111124457888899999999998888
Q ss_pred ccccCCc-------HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChh--HHHhcCcHHHHHHhccCC
Q 014196 192 PLSSSEI-------LPFLVGILESGSSVETKELCIGALYNLSAVLDNAR--PMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 192 ~i~~~g~-------i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~--~iv~~G~v~~Lv~lL~~~ 251 (429)
.|...+- +..|+++|......-.++-|+..|.||+..++... ...+.+.|..|+.++.+.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 7765443 34555555544333689999999999998776543 345569999999998654
No 186
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=81.88 E-value=21 Score=34.44 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=103.1
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcc-
Q 014196 114 GVIQMLV-SMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI- 191 (429)
Q Consensus 114 G~i~~Lv-~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~- 191 (429)
|.+..|| ..+++.++.+|+.|+.+|+-.+.-+.+. +. ..++.+...++..+.+.+..|..++..+........
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3454554 6778899999999999999998876322 11 124556677766678888888888888765422111
Q ss_pred --------ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC---c-chHHHHH
Q 014196 192 --------PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---E-RLSEKSL 259 (429)
Q Consensus 192 --------~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a~ 259 (429)
.......+..+.+.+.+.++ +++..|+..++.|--+..... ...++..|+-+--++ + .-.+.++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENP-ELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11224567778888888876 788889999988765543322 133445555444343 1 4566676
Q ss_pred HHHH-HhhC-ChhcHHHHhcCCCChHHHHHhcc
Q 014196 260 ATLG-NLVV-TSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 260 ~~L~-~La~-~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
.+.. ..+. +++.+..+.+ ..+ +++-.+..
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~-~f~-~~l~~~~~ 207 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAE-AFL-PTLRTLSN 207 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHH-HHH-HHHHHHHh
Confidence 6655 6665 4555555554 333 36665554
No 187
>PRK14707 hypothetical protein; Provisional
Probab=81.27 E-value=1.1e+02 Score=37.46 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=81.3
Q ss_pred CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc-CCc-chHHHHHHHHH-HhhCChhcHHHHhcCCCChHHH
Q 014196 209 GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS-MKE-RLSEKSLATLG-NLVVTSTGKKAMEDSPLVPESL 285 (429)
Q Consensus 209 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~-~~~-~~~~~a~~~L~-~La~~~e~~~~i~~~~~i~~~L 285 (429)
++...+...|...-..|+.+++-+..+- .-+|..++.-|+ -++ ...+.++..|. .|+..++.++.+-..| +- .+
T Consensus 344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-va-n~ 420 (2710)
T PRK14707 344 PDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VS-NA 420 (2710)
T ss_pred CCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HH-HH
Confidence 4433455544444445666665554443 334455555444 354 77777877886 8888899999987744 43 44
Q ss_pred HHhc-ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcc
Q 014196 286 IEIL-TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL--GSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 286 v~~L-~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~--~~~~~k~~A~~lL~~l~~~~ 354 (429)
+.-| +|.+.+.|...+ ..|..--.++.+.++.+--.++. ..+..+.. .++..+..|..+...+.+.+
T Consensus 421 lnalsKWPd~~~C~~aa-~~lA~~la~d~~l~~~~~p~~va-~~LnalSKWPd~p~c~~aa~~La~~l~~~~ 490 (2710)
T PRK14707 421 LNALAKWPDLPICGQAV-SALAGRLAHDTELCKALDPINVT-QALDALSKWPDTPICGQTASALAARLAHER 490 (2710)
T ss_pred HHHhhcCCcchhHHHHH-HHHHHHHhccHHHHhhcChHHHH-HHHHHhhcCCCChhHHHHHHHHHHHhcccH
Confidence 4444 565666565544 44443334567777777666644 44444443 35555566656777776543
No 188
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=81.22 E-value=54 Score=31.63 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=95.6
Q ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc-hH-H
Q 014196 74 LQKSV-KRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT-NK-A 150 (429)
Q Consensus 74 l~~lv-~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~-nk-~ 150 (429)
+..+| ..+++.++..|..|+..|...+--+.+.... .++.+...++.++..++..|+.++..+...... .- .
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 44444 4567778899999999999888766432222 267788888778899999999999987643210 00 0
Q ss_pred ------HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC---CcHHHHHHHHHH
Q 014196 151 ------IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG---SSVETKELCIGA 221 (429)
Q Consensus 151 ------~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~~A~~a 221 (429)
.......+..+...+.+.+.+.+..++..+..|-..+.... ....+..|+-+--++ +...+++ ++..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ-~L~~ 178 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ-CLSV 178 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH-HHHH
Confidence 01122345556666766677777777777777665443222 022334443332222 2123443 4443
Q ss_pred HH-HhccCCCChhHHHhcCcHHHHHHhccC
Q 014196 222 LY-NLSAVLDNARPMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 222 L~-nLs~~~~n~~~iv~~G~v~~Lv~lL~~ 250 (429)
.. ..+..+...+..+....+|.+-.+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 33 445444433455555556666555543
No 189
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.12 E-value=12 Score=31.47 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhcc
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVSTEV--IGRRRAAIKALIQLAN 143 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~--~~~~~~A~~aL~nLa~ 143 (429)
....+..+-++|.++++.++..|+..|..+.+. .......+...+++..|+.++.... +.+++.++..+...+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999886 4557788888899999999998743 3488888888877654
No 190
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.72 E-value=42 Score=36.91 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 69 DDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 69 ~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
.+...++..+..++++-+..|-.++..|+.+.+.. +....+-..+++....++|++.|+-+--+|+..+..|+.-
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh
Confidence 34556888899999888889999999999999744 4456666789999999999999988888888766666543
No 191
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.03 E-value=10 Score=40.58 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=83.8
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
.|.+..|++-..+.|..++-..+..|..+.-.. ......+-.+....|..-+....+.+|.+|+.+|..+=..+.. +
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-e- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-E- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-C-
Confidence 355667777788889999999998888776533 2233333345555555555555677888888888877643321 1
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh-----cCcHHHHHH
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS-----NGVVHTLLK 246 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-----~G~v~~Lv~ 246 (429)
+..++..++.++++++++++++ .+|.|++.+......+++ .|++..++.
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRR---aaLsnI~vdnsTlp~IveRarDV~~anRrlvY 214 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRR---AALSNISVDNSTLPCIVERARDVSGANRRLVY 214 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHH---HHHHhhccCcccchhHHHHhhhhhHHHHHHHH
Confidence 2345678888999887768888 457788877777666665 366666553
No 192
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=79.86 E-value=26 Score=35.30 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=82.1
Q ss_pred cHHHHHHhhcC---CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc-CC---CHHHHHHHHHHHHHhhccC
Q 014196 115 VIQMLVSMVST---EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD-AV---DESTRHEFGELLLSLSSLA 187 (429)
Q Consensus 115 ~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~-~~---~~~~~~~aa~~L~~Ls~~~ 187 (429)
....|-..++. ..+.+--.|+..+..+-.+++..-..+.++|.++.++..+. .. ..+.....-.+|..||.+.
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~ 186 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN 186 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence 34455556655 35788889999999999888766777889999998888776 32 2444444456888899888
Q ss_pred CCccccccCCcHHHHHHhhhcCCcHH------HHHHHHHHHHHhccCCCCh
Q 014196 188 NTHIPLSSSEILPFLVGILESGSSVE------TKELCIGALYNLSAVLDNA 232 (429)
Q Consensus 188 ~~~~~i~~~g~i~~Lv~lL~~~~~~~------~~~~A~~aL~nLs~~~~n~ 232 (429)
.....+.+.+.++.+++++.+.+... .-...-..+-.|.+|....
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~L 237 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSL 237 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHH
Confidence 88888888999999999998753211 1112223455567765443
No 193
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.83 E-value=14 Score=32.08 Aligned_cols=143 Identities=17% Similarity=0.061 Sum_probs=83.3
Q ss_pred HHHHHHhhhc-CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHH-hccCCc-chHHHHHHHHHHhhC-ChhcHHH
Q 014196 199 LPFLVGILES-GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLK-LCSMKE-RLSEKSLATLGNLVV-TSTGKKA 274 (429)
Q Consensus 199 i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~-lL~~~~-~~~~~a~~~L~~La~-~~e~~~~ 274 (429)
+..++..|.. ..+..++..+.-++..+- +..+... ...+...+. ++.+.+ +-...+..++..|-- .++.-..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~--~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF--KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH--HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3445555543 222257777887777662 1111111 122333333 333332 555667777765554 6777777
Q ss_pred HhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC-CHH-HHHHHHHHH
Q 014196 275 MEDSPLVPESLIEILTW-EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG-SPL-AQRRASKLL 347 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~-~k~~A~~lL 347 (429)
+....|+.+.++.++.+ ..+...+..++.+|.. ++.+...|..+.+.| ++-|-.+...+ ++. +|-.|+-.|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a-Ac~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSA-ACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH-HTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH-HHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHH
Confidence 77777877788888762 2455666666666654 445677787777776 89999999655 454 566665443
No 194
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=79.46 E-value=47 Score=36.80 Aligned_cols=182 Identities=12% Similarity=0.136 Sum_probs=105.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCCchHHHHHh
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV-STEVIGRRRAAIKALIQLANGTYTNKAIMVE 154 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~ 154 (429)
.+-..+.+.++..+.+|+..+.....+.. -...-...|.+-.+.... .+.+..+...|+..|.-|+...... ..=..
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~ 334 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYA 334 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHH
Confidence 44455567789999999999988775432 011111123333344333 3346677777788888787654222 11112
Q ss_pred cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CC-CCh
Q 014196 155 AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA-VL-DNA 232 (429)
Q Consensus 155 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~-~n~ 232 (429)
.+.+|.+...+..-..+.+..+..++-...... .-...++.....+.++++ +.+..+...+...-. .. .+.
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp-~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNP-QIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHhhcCCcCc
Confidence 356777777776666666666555554444211 112346778888888887 777766555544332 22 223
Q ss_pred hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhh
Q 014196 233 RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV 266 (429)
Q Consensus 233 ~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La 266 (429)
..-.-.+.+|.++....|.+ +++..+..++..+-
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 22222467788888888876 77777777666544
No 195
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=78.33 E-value=6.3 Score=41.43 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
....+..++......+..+|..|+..|-.+|+++++.-..+ +..|++||.++++.-....-.+|..|-..
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 34568888888888899999999999999999887766665 56899999999876665555555555443
No 196
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.60 E-value=19 Score=33.20 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=89.2
Q ss_pred HHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC----CcHHHHHHHHHHHHHhccCCC--ChhHHHhcCcHHHHHHhc
Q 014196 175 EFGELLLSLSSLANTHIPLSSSEILPFLVGILESG----SSVETKELCIGALYNLSAVLD--NARPMVSNGVVHTLLKLC 248 (429)
Q Consensus 175 ~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL 248 (429)
++..+|--++++++.+..+.++-.--.|...|... .-+-++-.+++++..|..++. -...+...++||..+.++
T Consensus 119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 44556677788888887777655433444444322 222466678899999887654 235677789999999999
Q ss_pred cCCcch-HHHHHHHHHHhhCChhcHHHHhcC----CCC---hHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHH
Q 014196 249 SMKERL-SEKSLATLGNLVVTSTGKKAMEDS----PLV---PESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMA 320 (429)
Q Consensus 249 ~~~~~~-~~~a~~~L~~La~~~e~~~~i~~~----~~i---~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~ 320 (429)
...++. +--++.++..+-.++.|-+.+.+. -++ ...++.-+-..++.+.-.+++.+-..+|.. +..|+.+-
T Consensus 199 e~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR~lL~ 277 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHARALLS 277 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHHHHHh
Confidence 766433 334555566666677766655432 111 112232222146667778888888888764 55665444
Q ss_pred h
Q 014196 321 K 321 (429)
Q Consensus 321 ~ 321 (429)
.
T Consensus 278 ~ 278 (315)
T COG5209 278 S 278 (315)
T ss_pred c
Confidence 3
No 197
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.40 E-value=97 Score=31.85 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhc-hHHHH-HHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCc
Q 014196 72 VLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKED-VKIKK-LMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 72 ~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~-~~~r~-~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
..+..++..+... ..+.+..|+..|..+..++ -.... .+.+ .+..++..|.. .+...+..|+..|..++.+..
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~--iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~- 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAE--ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP- 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-
Confidence 4456666666544 4567778888887766544 11221 1211 25667888877 678889999999999987642
Q ss_pred hHHHHHhc--CccchhhhhccCCCHHHHHHHHH-HHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 148 NKAIMVEA--GILTKLPKNVDAVDESTRHEFGE-LLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 148 nk~~iv~~--G~i~~Lv~lL~~~~~~~~~~aa~-~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
..+.+. -+|.+++..-.....++...|+. ++..++..+..+ .|..+..++...+. +.-..++..+..
T Consensus 363 --~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~-~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 363 --ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADE-PRAVAVIKMLTK 432 (516)
T ss_pred --HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcc-hHHHHHHHHHHH
Confidence 233321 24444444444455555555554 566666554332 23445555555554 222334445555
Q ss_pred hccCCCChhHH--HhcCcHHHHHHhccCCc-chHHHHHHHHHHhh
Q 014196 225 LSAVLDNARPM--VSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV 266 (429)
Q Consensus 225 Ls~~~~n~~~i--v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La 266 (429)
+...- ....+ +-..+.|.+++--...+ .+++.|+.+|..+.
T Consensus 433 l~e~l-~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 433 LFERL-SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHhhc-CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 55321 11111 11356677777666554 56666666665543
No 198
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=76.12 E-value=3.2 Score=42.26 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhccCCCCh----hHHHhcCcHHHHHHhccCC--cchHHHHHHHHHHhhCChhcH-HHHhcCCCChHH
Q 014196 212 VETKELCIGALYNLSAVLDNA----RPMVSNGVVHTLLKLCSMK--ERLSEKSLATLGNLVVTSTGK-KAMEDSPLVPES 284 (429)
Q Consensus 212 ~~~~~~A~~aL~nLs~~~~n~----~~iv~~G~v~~Lv~lL~~~--~~~~~~a~~~L~~La~~~e~~-~~i~~~~~i~~~ 284 (429)
.+++.+|.++|.|+...-... -...+.|.+..++...--+ -+++-+++.++.||.+++... +..-=++-+.+.
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 367888999999887532211 1222234444444332212 288899999999999976442 222223445567
Q ss_pred HHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 285 LIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 285 Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
|..++..+.+-+++-+|+++|.....
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCC
Confidence 88887756777888889998876554
No 199
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=75.88 E-value=64 Score=34.51 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHH---hcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhc--Cccc
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMA---ELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEA--GILT 159 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~---~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~--G~i~ 159 (429)
.++.+.-|+..||.+.+|...+-..+- ....+..++..+. .++.-+.-++.+|.|+-.+. .++..+... -.+.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~-~g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNP-AGRELFMSRLESILD 634 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCH-HHHHHHHHHHHHHhh
Confidence 455667788889988877654433332 1235556666665 56777888899999998885 577766643 1111
Q ss_pred hhhhhccCCC-HHHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhcC----CcHHHHHHHHHHHHHhccCCCCh
Q 014196 160 KLPKNVDAVD-ESTRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILESG----SSVETKELCIGALYNLSAVLDNA 232 (429)
Q Consensus 160 ~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~~A~~aL~nLs~~~~n~ 232 (429)
.++. .++.+ ...+...+....|+|..- ++.. .|..+.|...+... ...++.-..+.||.+|+..+.+.
T Consensus 635 ~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 635 PVIE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhh-hhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 1111 12333 233444444555665331 2211 45566666655442 11134556778889999888888
Q ss_pred hHHHhcCcHHHHHHhccC
Q 014196 233 RPMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 233 ~~iv~~G~v~~Lv~lL~~ 250 (429)
.++...--|..++.-+++
T Consensus 710 ~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 887776677777777664
No 200
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.08 E-value=13 Score=41.99 Aligned_cols=139 Identities=15% Similarity=0.030 Sum_probs=97.8
Q ss_pred cHHHHHHhhcC----CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCC
Q 014196 115 VIQMLVSMVST----EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANT 189 (429)
Q Consensus 115 ~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~ 189 (429)
..|.++...+. .||++|.+|..+|+.+..-+. .+.+ -.+|.|...++ ++.+..|-+++.++..|+..-.|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 35666666643 579999999999998876542 1221 24677888887 66677888898889888855433
Q ss_pred ccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 190 HIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 190 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
-.. ..-+.|.+.|.+.++ .+++.|+.+|.+|-..+ +|---|.++-+..+|.|++ ++..-|=....+|+.
T Consensus 995 lie----~~T~~Ly~rL~D~~~-~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIE----PWTEHLYRRLRDESP-SVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc----hhhHHHHHHhcCccH-HHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 211 234788888988887 79999999999987643 3333588999999999886 565555544445544
No 201
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=75.00 E-value=5 Score=38.88 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014196 72 VLLQKSVKRLHFGSWE-EKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQL 141 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~-~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nL 141 (429)
..+..|.+.|++.++. .-.-|+..|..+.+..|+.+..+.+.|+=..+..++.++|++++-.|+.++..+
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 4567888888887665 334588899999999999999999999999999999999999999999988655
No 202
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=74.43 E-value=2.6 Score=46.56 Aligned_cols=54 Identities=19% Similarity=0.022 Sum_probs=45.6
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhc-cc-cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSK-SA-RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g-~~-~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|.-|+..=..|+|-|| |++-+-++ ++ .-+++|....++||.+||.-|+.|-...
T Consensus 880 m~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 880 MSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred CCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 5567666667899999 99987655 44 9999999989999999999999998765
No 203
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.45 E-value=1.1e+02 Score=35.00 Aligned_cols=249 Identities=18% Similarity=0.146 Sum_probs=135.5
Q ss_pred HHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc--hHHHHHhcCccchhhhhccCCC--
Q 014196 94 KEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT--NKAIMVEAGILTKLPKNVDAVD-- 169 (429)
Q Consensus 94 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~--nk~~iv~~G~i~~Lv~lL~~~~-- 169 (429)
..|-.+-+.+.+|...+.++.++..++.+|-+ .+-+..-+..+..|-..+.. .-+.+ -.++..|+++-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqvhhqel------malVdtLksgmvt 735 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQVHHQEL------MALVDTLKSGMVT 735 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccccHHHH------HHHHHHHHhccee
Confidence 44666778888999999999988888887743 23444445555555444321 11221 12344444321
Q ss_pred ----------HHHHHHHHHHHHHhh-ccCCCccccccCCcHHHHHHhhhc--------CCcHHHH-HHHHHHHHH---h-
Q 014196 170 ----------ESTRHEFGELLLSLS-SLANTHIPLSSSEILPFLVGILES--------GSSVETK-ELCIGALYN---L- 225 (429)
Q Consensus 170 ----------~~~~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~~~~-~~A~~aL~n---L- 225 (429)
.+......+++|.+- .+...+..++++++...|...|.. +.....+ -.-...|+. +
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 223334456777775 334667788888888888877742 1110111 112223322 2
Q ss_pred -ccCCCChhHH-------------HhcC---------cHHHHHHh----ccCCcchH-HHHHHHHHHhhC------Ch--
Q 014196 226 -SAVLDNARPM-------------VSNG---------VVHTLLKL----CSMKERLS-EKSLATLGNLVV------TS-- 269 (429)
Q Consensus 226 -s~~~~n~~~i-------------v~~G---------~v~~Lv~l----L~~~~~~~-~~a~~~L~~La~------~~-- 269 (429)
|.++.|+..+ .+.| .|..+.++ +..+.-.. ..|++.+..+-. .|
T Consensus 816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG 895 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG 895 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence 3344554332 2333 22222222 11111111 122333333211 12
Q ss_pred ---hcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh---cCCHHHHHHH
Q 014196 270 ---TGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL---LGSPLAQRRA 343 (429)
Q Consensus 270 ---e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~---~~~~~~k~~A 343 (429)
..++.|-++|.+. .|+..+- ...++.|-.-...|-.+++-++.+....-..|.+..|+++.. +|+...-..|
T Consensus 896 qfnpdk~~iynagavR-vlirslL-lnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 896 QFNPDKQKIYNAGAVR-VLIRSLL-LNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred CcCchHhhhcccchhH-HHHHHHH-hhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 2466778878775 7888766 577888877777777888777777777777898888888764 3544444455
Q ss_pred HHHHHHHHh
Q 014196 344 SKLLQWFKD 352 (429)
Q Consensus 344 ~~lL~~l~~ 352 (429)
..++.+|.-
T Consensus 974 lkIvemLga 982 (2799)
T KOG1788|consen 974 LKIVEMLGA 982 (2799)
T ss_pred HHHHHHHhh
Confidence 555555554
No 204
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.27 E-value=17 Score=30.90 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hHHHHHHHhcCcHHHHHHhhcCC-CH-H--HHHHHHHHHHHhc
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VKIKKLMAELGVIQMLVSMVSTE-VI-G--RRRAAIKALIQLA 142 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~-~~-~--~~~~A~~aL~nLa 142 (429)
....+..+.++|.++++.++..|+..|-.+.+.. +..+..+.....+..|+.++.+. .. . +++.++..|...+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999875 56778888888899999988753 33 3 8888888877765
No 205
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=72.84 E-value=85 Score=29.54 Aligned_cols=142 Identities=19% Similarity=0.124 Sum_probs=83.3
Q ss_pred HHHHHHhhhcC---CcHHHHHHHHHHHHHhccCCCChhHHHhcC--cHHHHHHhccCC----c-chHHHHHHHHHHhhCC
Q 014196 199 LPFLVGILESG---SSVETKELCIGALYNLSAVLDNARPMVSNG--VVHTLLKLCSMK----E-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 199 i~~Lv~lL~~~---~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G--~v~~Lv~lL~~~----~-~~~~~a~~~L~~La~~ 268 (429)
...+..++..+ .....+.-++++++|+-.+...+..+.+.. .+...+..+... . .++-.++.++.|++..
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~ 187 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVL 187 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 34444444433 233567779999999999988887777653 333333333322 3 3444445555688741
Q ss_pred ----h---hcHHHHhcCCCChHHHHHhc-ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-CCHHH
Q 014196 269 ----S---TGKKAMEDSPLVPESLIEIL-TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-GSPLA 339 (429)
Q Consensus 269 ----~---e~~~~i~~~~~i~~~Lv~~L-~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~ 339 (429)
. +.+..+ ...+++.+ ....+++..-.++.+|+++...+....+.....|+-..+-..... .+++.
T Consensus 188 ~~~~~~~~~~~~~l------l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri 261 (268)
T PF08324_consen 188 LHKNRSDEEWQSEL------LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRI 261 (268)
T ss_dssp HHHCTS-CCHHHHH------HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHH
T ss_pred HHhcCCChHHHHHH------HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHH
Confidence 1 111111 22455533 222577888889999999997666666555556766655555544 46777
Q ss_pred HHHHHHH
Q 014196 340 QRRASKL 346 (429)
Q Consensus 340 k~~A~~l 346 (429)
++-+..|
T Consensus 262 ~~v~~ei 268 (268)
T PF08324_consen 262 KEVAAEI 268 (268)
T ss_dssp HHHHHHH
T ss_pred HHHhccC
Confidence 7776543
No 206
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=72.78 E-value=24 Score=39.04 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=84.6
Q ss_pred ccccCCcHHHHHHhhhcC----CcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc----C-C----cchHHHH
Q 014196 192 PLSSSEILPFLVGILESG----SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS----M-K----ERLSEKS 258 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~~----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~----~-~----~~~~~~a 258 (429)
.+.+.|++..|+.++.+- .....-...+..|...+..+.|+..+++.|+++.|+..|. + . ..+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 344789999999998762 1123455577777888889999999999999999998774 2 1 2778888
Q ss_pred HHHHHHhhCChh--cHH---HHhcCCC----C---hHHHHHhcccC---CChhHHHHHHHHHHHHhhCCHHHHHHHHh
Q 014196 259 LATLGNLVVTST--GKK---AMEDSPL----V---PESLIEILTWE---EKPKCQELSAYILMILAHQSSEQRDKMAK 321 (429)
Q Consensus 259 ~~~L~~La~~~e--~~~---~i~~~~~----i---~~~Lv~~L~~~---~s~~~~e~A~~~L~~L~~~~~~~~~~i~~ 321 (429)
+.++..|..... ... ......+ . +..|++.+... .++...+.-..+|-+|+-++++..+.+++
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 888876654211 111 1011111 1 12555555421 35666777778888888777777666665
No 207
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=72.40 E-value=0.78 Score=32.67 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=15.8
Q ss_pred CCCcchhhhhhhhHH--HHHHHH
Q 014196 2 SIPSSSYMRLQFFSR--IRQFIQ 22 (429)
Q Consensus 2 ~~~~~~~~~~~TydR--Ie~W~~ 22 (429)
..|+.+-.=|+|||| |++||.
T Consensus 22 ~~PV~s~~C~H~fek~aI~~~i~ 44 (57)
T PF11789_consen 22 EDPVKSKKCGHTFEKEAILQYIQ 44 (57)
T ss_dssp SSEEEESSS--EEEHHHHHHHCT
T ss_pred hCCcCcCCCCCeecHHHHHHHHH
Confidence 468888777899999 999994
No 208
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.76 E-value=11 Score=32.98 Aligned_cols=106 Identities=22% Similarity=0.194 Sum_probs=65.7
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHhhccCCCcccccc--CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh----h
Q 014196 160 KLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSS--SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA----R 233 (429)
Q Consensus 160 ~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~----~ 233 (429)
.+..++++.+.+.|-..+.++...+.... ...+.+ ...+..|+++|+..++..+++.|+.+|..|...-... +
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~R 107 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTR 107 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 35677777777777766666666553322 233322 3367788999998877678888988888876543333 3
Q ss_pred HHHh---cCcHHHHHHhccCCcchHHHHHHHHHHhhC
Q 014196 234 PMVS---NGVVHTLLKLCSMKERLSEKSLATLGNLVV 267 (429)
Q Consensus 234 ~iv~---~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~ 267 (429)
++.- .+.++.++.++.+ +...+.++.+|..+-.
T Consensus 108 ei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 108 EIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLP 143 (165)
T ss_pred HHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 3322 1445555666654 3666777777775544
No 209
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.48 E-value=38 Score=32.85 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...+...+..|.+.+++.+..++..|+.|+...++....+. .-.|..+|.=+++....+-..|+.++..+...- | .
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~l--n-~ 162 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL--N-N 162 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH--H-H
Confidence 34678899999999999999999999999976654333222 234777888888888888899999988886542 1 2
Q ss_pred HHHhcCccchh-hhhccCCC---HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 151 IMVEAGILTKL-PKNVDAVD---ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 151 ~iv~~G~i~~L-v~lL~~~~---~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
.|.+ .++.+ ..|+.... .-+++.|-.+|-.+..+... .-+++.|...+++..+ .++..++.+
T Consensus 163 ~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~-r~r~~a~~~ 228 (334)
T KOG2933|consen 163 SIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNP-RVRAKAALC 228 (334)
T ss_pred HHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhch-hhhhhhhcc
Confidence 2222 22222 33343332 22455555677766632211 1245667667777665 455544443
No 210
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.70 E-value=99 Score=33.90 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 75 QKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 75 ~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
..|..+|.+.....|.+|.+.|-.+-.++.... ...|..|.-..+.|.+++.-.---|..-|..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe 101 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEE 101 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc
Confidence 456677777777777777777666544332221 2356677777777777776655444444433
No 211
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.34 E-value=21 Score=28.97 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=49.6
Q ss_pred CcccchhhHHHHHHHHHh---hcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh
Q 014196 36 NHEKSRTLKNINCQEEKQ---VIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE 112 (429)
Q Consensus 36 ~L~PN~~Lr~lI~~W~~~---~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~ 112 (429)
+-.-...+|+++..+..+ |---++-++..|. +.+.| .-.--..+..+..++. .|+.--.+++
T Consensus 21 e~lD~~~lkklvl~fek~i~kN~e~R~K~~ddP~------------KFmdS--E~dLd~~Ik~l~~La~-~P~LYp~lv~ 85 (108)
T PF08216_consen 21 EVLDEAWLKKLVLSFEKRINKNQEMRIKYPDDPE------------KFMDS--EVDLDEEIKKLSVLAT-APELYPELVE 85 (108)
T ss_pred cccCHHHHHHHHHHHHHHHHHhHHHHHhCCCCHH------------HHHHh--HHHHHHHHHHHHHccC-ChhHHHHHHH
Confidence 344556789999888853 2111222222221 11112 1122345666777775 5678888999
Q ss_pred cCcHHHHHHhhcCCCHHHH
Q 014196 113 LGVIQMLVSMVSTEVIGRR 131 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~ 131 (429)
.|+++.|+.+|..++.++.
T Consensus 86 l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 86 LGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred cCCHHHHHHHHCCCCccee
Confidence 9999999999999887654
No 212
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.15 E-value=23 Score=37.20 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=76.4
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
.|.+..+++-+.+.|..++..++..|.-++-.- ..-...+-.|.+..|..-+-...+.+|.+|+.+|..+-....+-.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee- 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE- 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-
Confidence 355777888888999999999998888776443 223345555777666665555567788888877776643322211
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS 237 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 237 (429)
......|+.+++++.+.++++ .+|.|++..+....-++|
T Consensus 168 ---n~~~n~l~~~vqnDPS~EVRr---~allni~vdnsT~p~IlE 206 (885)
T COG5218 168 ---NRIVNLLKDIVQNDPSDEVRR---LALLNISVDNSTYPCILE 206 (885)
T ss_pred ---HHHHHHHHHHHhcCcHHHHHH---HHHHHeeeCCCcchhHHH
Confidence 122446777888776657777 467888877665554443
No 213
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=68.06 E-value=32 Score=35.03 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=71.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc--------h-----HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHH
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYT--------N-----KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLS 182 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~--------n-----k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~ 182 (429)
+..|+.+|.+ +++...++.++.-|..+.+. + |+.+.. -.+|.|+.-.+..+.+.+.....+|..
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 5567777766 66778888888888776221 1 222222 356666666665555566776667777
Q ss_pred hhccCCCcccccc-CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 183 LSSLANTHIPLSS-SEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 183 Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
+-.+-.....+.+ ...+|.|++-|..++. .++..++.+|..+....
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~-~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDA-DVLLSSLETLKMILEEA 396 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcC
Confidence 6643332222222 4578888888888887 68889999998887654
No 214
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=67.16 E-value=1e+02 Score=34.29 Aligned_cols=168 Identities=16% Similarity=0.125 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 170 ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 170 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
...|.+++.-+................|.+-.+.+....+....+...++..|-.|+..-.....=...+++|.+++.+.
T Consensus 267 WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK 346 (815)
T ss_pred hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh
Confidence 34455565555544433321122224455555666555443335666777777777764322222223478899999888
Q ss_pred CCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH-HHHHHHHhCCchHH
Q 014196 250 MKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS-EQRDKMAKSGIVHV 327 (429)
Q Consensus 250 ~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~-~~~~~i~~~G~v~~ 327 (429)
+.- .+++....++-..+.. .....+.+.+.+.+. ++++..+..+...+........ .....-.-.+.+|.
T Consensus 347 ekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk-~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~ 418 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILNS-------TPLSKMSEAILEALK-GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPH 418 (815)
T ss_pred hccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHH
Confidence 753 6666666666544431 011122235556666 6777666655444443222111 11111111234455
Q ss_pred HHHHhhcCCHHHHHHHHH
Q 014196 328 SLQLALLGSPLAQRRASK 345 (429)
Q Consensus 328 L~~ll~~~~~~~k~~A~~ 345 (429)
++....+....++..|..
T Consensus 419 ~~~~~~D~~~~VR~Aa~e 436 (815)
T KOG1820|consen 419 LIKHINDTDKDVRKAALE 436 (815)
T ss_pred HhhhccCCcHHHHHHHHH
Confidence 555444445555555554
No 215
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=66.93 E-value=22 Score=39.28 Aligned_cols=145 Identities=16% Similarity=0.211 Sum_probs=93.5
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHh--cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE--AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH 190 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~--~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 190 (429)
..++|.|++.....+...+..=+.+|.+.-.+-+ ++.+.. ...+|.|++.|.-++...|-.+..++..+-. ...
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP--~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~--~~~ 941 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP--KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT--ESE 941 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC--HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH--hcc
Confidence 4578999998886666677777778877766543 444432 3467777777777777776665555544331 111
Q ss_pred cccc--cCCcHHHHHHhhhcCCc--HHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHH
Q 014196 191 IPLS--SSEILPFLVGILESGSS--VETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLAT 261 (429)
Q Consensus 191 ~~i~--~~g~i~~Lv~lL~~~~~--~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~ 261 (429)
..+. -.-.+|.+..+=.+.+. ..++..|+.+|..|.. .|.+.-.--.-.++..|...|+|+. -+++.|..+
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2222 13467777777665542 4688999999999988 5555444444567888999998875 555555543
No 216
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=66.37 E-value=93 Score=34.09 Aligned_cols=194 Identities=14% Similarity=0.074 Sum_probs=114.0
Q ss_pred HHHHhccCCCchHHHHHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccccCCcHH--HHHHhhhcCCcHH
Q 014196 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLSSSEILP--FLVGILESGSSVE 213 (429)
Q Consensus 137 aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~ 213 (429)
+|+++...++++...+.+.|++..+..+++.-+ .+....+.+.+.+++....++.....-..+. .+-.++..-+..+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 677888887778899999999999999998544 5567778889999987765555443211122 2222333322213
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHh-hCChhcHHHHhcCCCChHHHHHhcccC
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNL-VVTSTGKKAMEDSPLVPESLIEILTWE 292 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~L-a~~~e~~~~i~~~~~i~~~Lv~~L~~~ 292 (429)
.-..|+..|..+-.+.+. ..+. ...+.+...+.+. ...+.....+....-..+.+-.++...
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~--------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTEC--------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccc--------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 445666666666654433 1110 2233333333322 222222222222122221244444434
Q ss_pred CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHH
Q 014196 293 EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG-SPLAQRRASKLL 347 (429)
Q Consensus 293 ~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~~k~~A~~lL 347 (429)
..+..+-.|++++.+++...+++.+.+.+.|+++.+..+-... ...++..+..++
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 5677788899999999988888999999999999887765532 445555555544
No 217
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=63.90 E-value=55 Score=31.08 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=73.1
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 74 LQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 74 l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
+..+-..|... ...++..|.+.||++-.+. +|-.|++=|..++.-.|..++.+++.|-..
T Consensus 156 v~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l~~~SalfrhEvAfVfGQl~s~------- 217 (289)
T KOG0567|consen 156 VHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGLADDSALFRHEVAFVFGQLQSP------- 217 (289)
T ss_pred HHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhcccchHHHHHHHHHHHhhccch-------
Confidence 44444444332 2356667888888875422 255667777777777788888888766322
Q ss_pred HHhcCccchhhhhccCCC--HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 152 MVEAGILTKLPKNVDAVD--ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
-+||.|.+.|.... +-+|.+||.+|..++ +..+++.|.+.+.+... -+++.|.-+|-
T Consensus 218 ----~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~-vv~esc~vald 276 (289)
T KOG0567|consen 218 ----AAIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEER-VVRESCEVALD 276 (289)
T ss_pred ----hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHH-HHHHHHHHHHH
Confidence 23555566554322 456778888888766 33467888888877765 46665555554
No 218
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=63.81 E-value=93 Score=34.08 Aligned_cols=154 Identities=11% Similarity=0.066 Sum_probs=93.7
Q ss_pred HHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCchHHHHHhcCccc--hhhhhccCCCH-
Q 014196 95 EIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTYTNKAIMVEAGILT--KLPKNVDAVDE- 170 (429)
Q Consensus 95 ~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~--~Lv~lL~~~~~- 170 (429)
.|.....+++++...+.+.|++..+..+++.. ..+.+..++..|.|++...+ ++........+. .+-.++..-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 77788889999999999999999999999975 46788899999999987763 322211111111 11112222222
Q ss_pred HHHHHHHHHHHHhhccCCC------------------------ccccccCCcHHH-HHHhhhcCCcHHHHHHHHHHHHHh
Q 014196 171 STRHEFGELLLSLSSLANT------------------------HIPLSSSEILPF-LVGILESGSSVETKELCIGALYNL 225 (429)
Q Consensus 171 ~~~~~aa~~L~~Ls~~~~~------------------------~~~i~~~g~i~~-Lv~lL~~~~~~~~~~~A~~aL~nL 225 (429)
+.-..++.+|..+-.+.+. .........+.+ +.+++.....+.....|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 3334455555555443211 010111122233 445555443335667789999988
Q ss_pred cc-CCCChhHHHhcCcHHHHHHhcc
Q 014196 226 SA-VLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 226 s~-~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
.. .++++..+.+.|+++.+..+-.
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcch
Confidence 76 5667888888888887776544
No 219
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.36 E-value=83 Score=35.96 Aligned_cols=148 Identities=19% Similarity=0.094 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhh
Q 014196 84 GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLP 162 (429)
Q Consensus 84 ~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv 162 (429)
++|+.|..|--+|..+.--+.+ +.+ -..|.|+.++. ++++-++.+++.+++-++..-+ |-. + -.-+.|.
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~----fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fp-nli---e-~~T~~Ly 1004 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAE----FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP-NLI---E-PWTEHLY 1004 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHH----HHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcc-ccc---c-hhhHHHH
Confidence 4788998888888887643322 222 12789999997 7899999999999999987753 311 1 0112345
Q ss_pred hhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHH
Q 014196 163 KNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVH 242 (429)
Q Consensus 163 ~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~ 242 (429)
.-|+..+..+|+.|..+|..|-.++ .|--.|-++-++..|.+++. +++.-|-.-...|+... |-. -..+|
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~-~IsdlAk~FF~Els~k~-n~i----ynlLP 1074 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNA-EISDLAKSFFKELSSKG-NTI----YNLLP 1074 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcH-HHHHHHHHHHHHhhhcc-cch----hhhch
Confidence 6677778899999999999888655 33346888999999988886 56654443344455433 211 13455
Q ss_pred HHHHhccCC
Q 014196 243 TLLKLCSMK 251 (429)
Q Consensus 243 ~Lv~lL~~~ 251 (429)
-++.-|++.
T Consensus 1075 dil~~Ls~~ 1083 (1251)
T KOG0414|consen 1075 DILSRLSNG 1083 (1251)
T ss_pred HHHHhhccC
Confidence 555555554
No 220
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=62.62 E-value=42 Score=31.69 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcC--cHHHHHHhhcC----CCHHHHHHHHHHHHHhccCCCc
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELG--VIQMLVSMVST----EVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
...+++.+..=..+.+.-++.-+|.++.+. .....+...+ ....+..++.. ..+..+.-++.++.|+-.+. .
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~ 142 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHP-PASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-P 142 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCH-CHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-C
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCc-cHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-c
Confidence 444444444433345566777777766643 4444554432 34555555543 35677888999999998886 5
Q ss_pred hHHHHHhcC--ccchhhh-hccCC---CHHHHHHHHHHHHHhhccCC-Ccc-ccccCCcHHHHHHhhhc--CCcHHHHHH
Q 014196 148 NKAIMVEAG--ILTKLPK-NVDAV---DESTRHEFGELLLSLSSLAN-THI-PLSSSEILPFLVGILES--GSSVETKEL 217 (429)
Q Consensus 148 nk~~iv~~G--~i~~Lv~-lL~~~---~~~~~~~aa~~L~~Ls~~~~-~~~-~i~~~g~i~~Lv~lL~~--~~~~~~~~~ 217 (429)
.+..+.+.. .+-..+. +..+. +...+..++.+++|+|..-. .+. .=.....+..+++.+.. .++ ++...
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~-Ea~~R 221 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDE-EALYR 221 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSH-HHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCH-HHHHH
Confidence 777777543 2222222 22222 34456667778999986531 111 10112235555663332 344 67778
Q ss_pred HHHHHHHhccCCCChhHHHh
Q 014196 218 CIGALYNLSAVLDNARPMVS 237 (429)
Q Consensus 218 A~~aL~nLs~~~~n~~~iv~ 237 (429)
++.||.+|...+........
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCC
T ss_pred HHHHHHHHhccChhHHHHHH
Confidence 99999999976655555554
No 221
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.53 E-value=1.2e+02 Score=31.28 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=80.5
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHH-HHhhCC-hhcHHH
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATL-GNLVVT-STGKKA 274 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L-~~La~~-~e~~~~ 274 (429)
.+..++++|.+......++-|++.|..++.++..+-.=-..-+|..+++.-.|.. ++...|...+ .-++.+ |. +.
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--~~ 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--QC 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--hH
Confidence 3556777777633335788899999998877644311111134555566555553 4444333332 233332 22 11
Q ss_pred HhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC-C-HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH-HHHH
Q 014196 275 MEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ-S-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL-QWFK 351 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~-~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL-~~l~ 351 (429)
|+ .+..++. ..+...--.++..+..|+.+ + ++....+ ..+.|.+++--.+.+..+|+.|+..| .+..
T Consensus 408 I~-------~i~~~Il-t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 IV-------NISPLIL-TADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HH-------HHhhHHh-cCcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 11 3333333 22333333444456666653 2 2233222 35788888888888899999999854 3333
Q ss_pred hccccCCCCC
Q 014196 352 DERQAKMGPH 361 (429)
Q Consensus 352 ~~~~~~~~~~ 361 (429)
.-+..++.+|
T Consensus 478 ~vG~~~mePh 487 (516)
T KOG2956|consen 478 RVGMEEMEPH 487 (516)
T ss_pred HHhHHhhhhH
Confidence 4342236666
No 222
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.51 E-value=39 Score=36.60 Aligned_cols=120 Identities=13% Similarity=0.010 Sum_probs=72.5
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKR-LHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~-L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.|.+|+.. ....|.++|+.|+.+|..++..+++. .|..|++|. +.++.+|-.++.+|+--+.+. .++.
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e 624 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE 624 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH
Confidence 34444443 33457788888888888777766653 566678875 468999999999998888776 5777
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhh--ccCCCccccccCCcHHHHHHhhhcCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLS--SLANTHIPLSSSEILPFLVGILESGS 210 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls--~~~~~~~~i~~~g~i~~Lv~lL~~~~ 210 (429)
.|- .+ -.+...+..-+|+.|.-++.-+- ..+...+.+ .|+...+.+++.+..
T Consensus 625 Ai~---lL---epl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 625 AIN---LL---EPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKH 678 (929)
T ss_pred HHH---HH---hhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhh
Confidence 652 23 33344443445666544433332 222223322 456667777776644
No 223
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.32 E-value=38 Score=36.43 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=83.3
Q ss_pred CcHHHHHHhhhcC-CcHHHHHHHHHHHHHhccCCCCh--hHHHh------c----Cc----HHHHHHhccCCc-chHHHH
Q 014196 197 EILPFLVGILESG-SSVETKELCIGALYNLSAVLDNA--RPMVS------N----GV----VHTLLKLCSMKE-RLSEKS 258 (429)
Q Consensus 197 g~i~~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~n~--~~iv~------~----G~----v~~Lv~lL~~~~-~~~~~a 258 (429)
|.+.-|+.++... +...++++-...|++++.+.... .+-+. . |. ...++++|...+ -++-..
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~ 319 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF 319 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHH
Confidence 3444455555442 22245666677777777643321 11111 1 11 234556666543 334444
Q ss_pred HHHHHHhhC----ChhcHHHHh-cCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC---HHHHHHHHhCCchHHHHH
Q 014196 259 LATLGNLVV----TSTGKKAME-DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS---SEQRDKMAKSGIVHVSLQ 330 (429)
Q Consensus 259 ~~~L~~La~----~~e~~~~i~-~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~---~~~~~~i~~~G~v~~L~~ 330 (429)
+.+++|++. .++.-...- .-...+..|++-+. +.+|-++..|+..+-.+|..+ +.-|+.+ +.....
T Consensus 320 ~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~sk~~~~r~ev-----~~lv~r 393 (1128)
T COG5098 320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDLNSKTVGRRHEV-----IRLVGR 393 (1128)
T ss_pred HHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCcccccchHHHH-----HHHHHH
Confidence 555666654 231111110 11122334555555 678999999999999988743 2334443 444567
Q ss_pred HhhcCCHHHHHHHHHHH-HHHHhccc
Q 014196 331 LALLGSPLAQRRASKLL-QWFKDERQ 355 (429)
Q Consensus 331 ll~~~~~~~k~~A~~lL-~~l~~~~~ 355 (429)
.+++.+..++++|..++ +.|-++|.
T Consensus 394 ~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 394 RLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 78889999999999875 45556664
No 224
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.62 E-value=2.6e+02 Score=30.71 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA 187 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~ 187 (429)
.+.|=++|.+.+..+.-.|+.++.++..... ..+.. ++..|-.++.++....|-.|..+|..++...
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 4445556667778888888999988876542 22222 4555556677777777877888999888654
No 225
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=60.47 E-value=58 Score=25.95 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=44.8
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHH
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEF 176 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~a 176 (429)
.+.+..|+.-...++...++.++..|..+..++ .....+.+-|++..|-++=...++..+...
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~-~a~~~l~~iG~~~fL~klr~~~~~~~~~~i 91 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP-YAAQILRDIGAVRFLSKLRPNVEPNLQAEI 91 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc-HHHHHHHHccHHHHHHHHHhcCCHHHHHHH
Confidence 445666667666666678889999999999997 477888899998876665444444444433
No 226
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=59.75 E-value=21 Score=39.43 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCC---HHHHHHHHHHHHHhccCC
Q 014196 69 DDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV---IGRRRAAIKALIQLANGT 145 (429)
Q Consensus 69 ~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~---~~~~~~A~~aL~nLa~~~ 145 (429)
..+..+|-+++.|.-+|..+|..+...|..+..+++..-..=+ .-.||.++.+=.+.| ..+++.|+.+|..|...-
T Consensus 906 ~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~ 984 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRL 984 (1030)
T ss_pred chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccC
Confidence 4456688899999999999999999999988776643221111 224777777666655 578999999999998844
Q ss_pred CchHHHHHhcCccchhhhhccCCCHHHHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAVDESTRHEFGEL 179 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~ 179 (429)
+.+.-.-....+|..|.++|..++--+|.+|+.+
T Consensus 985 P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 985 PTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred CCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 3344444445566677888877776677777653
No 227
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.77 E-value=1.7e+02 Score=30.34 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=79.5
Q ss_pred hcCcHHHHHHhh----cCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhh-hccCCCHHHHHHHHHHHHHhhcc
Q 014196 112 ELGVIQMLVSMV----STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPK-NVDAVDESTRHEFGELLLSLSSL 186 (429)
Q Consensus 112 ~~G~i~~Lv~lL----~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls~~ 186 (429)
+.|....++..| .+++..++..|+..|.|.+...+ .+..=...-.+..++. +....+.++.-++..+|.-+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P-~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAP-DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCc-HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 345555544444 34567888999999999998742 2211111112222233 33333456666666555544422
Q ss_pred CCCccccccCCcHH---HHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh--hHHHh--cCcHHHHHHhccCCcchHHHHH
Q 014196 187 ANTHIPLSSSEILP---FLVGILESGSSVETKELCIGALYNLSAVLDNA--RPMVS--NGVVHTLLKLCSMKERLSEKSL 259 (429)
Q Consensus 187 ~~~~~~i~~~g~i~---~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~--~~iv~--~G~v~~Lv~lL~~~~~~~~~a~ 259 (429)
..+... ..+.++ .+..+..+.++ +.+.+|......|+...... ..+.+ .+...+++..|.|+....-.|+
T Consensus 331 ~~~~~l--~~~~l~ialrlR~l~~se~~-~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 331 ASNDDL--ESYLLNIALRLRTLFDSEDD-KMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhhcch--hhhchhHHHHHHHHHHhcCh-hhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 222211 122233 44555666666 78888888887887633322 23332 1333455555666655556666
Q ss_pred HHHHHhhC
Q 014196 260 ATLGNLVV 267 (429)
Q Consensus 260 ~~L~~La~ 267 (429)
......|.
T Consensus 408 r~~~~~c~ 415 (533)
T KOG2032|consen 408 RSELRTCY 415 (533)
T ss_pred HHHHHhcC
Confidence 66555544
No 228
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.39 E-value=45 Score=26.17 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred HHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH
Q 014196 241 VHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS 313 (429)
Q Consensus 241 v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~ 313 (429)
+...+..+.|+. +++..++..|..|..... ..+.....+...+...|. +..+-+--+|+..|..||...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-DEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-CCCchHHHHHHHHHHHHHHHCh
Confidence 445666777775 899999999998887554 223333344446667777 6777788899999999987544
No 229
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=57.10 E-value=31 Score=29.95 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=67.3
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhchHHHHHHH-hcCcHHHHHHhhc--CCCHHHHHHHHHHHHHhccCCCch
Q 014196 73 LLQKSVKRLH-FGSWEEKEMAAKEIEKLAKEDVKIKKLMA-ELGVIQMLVSMVS--TEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 73 ~l~~lv~~L~-~~~~~~~~~Aa~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.+...+..+- .++.+....+...+..+---.++.-..+. ..|..+.++.+.. +.+..++..++.+|..-+.+ +..
T Consensus 43 ~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~ 121 (157)
T PF11701_consen 43 KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSC 121 (157)
T ss_dssp HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHH
Confidence 3444444433 33334667777788777665565544444 5799999999998 77888888888877555554 345
Q ss_pred HHHHHhcCccchhhhhccCCC-HH-HHHHHHHHHH
Q 014196 149 KAIMVEAGILTKLPKNVDAVD-ES-TRHEFGELLL 181 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~-~~-~~~~aa~~L~ 181 (429)
|..|.+. +++.|-.++...+ .. .|..|+..|.
T Consensus 122 r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 122 RTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 6666665 4677777775444 33 4555555554
No 230
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=55.82 E-value=3e+02 Score=29.77 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=72.9
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc----CCcchHHHHHHHHH-HhhC--Chh
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS----MKERLSEKSLATLG-NLVV--TST 270 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~----~~~~~~~~a~~~L~-~La~--~~e 270 (429)
.+..++..+. +++ ..+.-++++|.|+-.++.++.-+... ...++..+. .++.....|.++|. |++- ..+
T Consensus 590 ~~~~li~~~~-~~~-an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~ 665 (745)
T KOG0301|consen 590 LVGTLIPILN-ADP-ANQLLVVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQD 665 (745)
T ss_pred HHHhhhcccc-cch-hHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhc
Confidence 4445555554 444 45667899999999887777655443 222222221 12245566666664 5442 111
Q ss_pred cHHHHhcCCCChHHHHH----hcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-C-CHHHHHHHH
Q 014196 271 GKKAMEDSPLVPESLIE----ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-G-SPLAQRRAS 344 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~----~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~-~~~~k~~A~ 344 (429)
.-+ .++.. .|.. .+.+..+-++.-....+|.+|+..+....+....-+ +..+..-+.+ . .+..+.-|.
T Consensus 666 ~~~----~~~~~-~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~-v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 666 NEQ----LEGKE-VLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRS-VDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred ccc----cchHH-HHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcC-HHHHHHHHHHhccCchhhHHHH
Confidence 111 22222 3333 333222223444566777788876655655555445 5666665554 2 455555555
Q ss_pred HHHHH
Q 014196 345 KLLQW 349 (429)
Q Consensus 345 ~lL~~ 349 (429)
.+|++
T Consensus 740 ~il~~ 744 (745)
T KOG0301|consen 740 DILSL 744 (745)
T ss_pred HHHhc
Confidence 55554
No 231
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=54.89 E-value=53 Score=28.70 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcC--cHHHHHHhhcCCC-HHHHHHHHHHHHHhcc
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELG--VIQMLVSMVSTEV-IGRRRAAIKALIQLAN 143 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~ 143 (429)
.+.++...|++.+++.+-.++.-++.....++ .+.+.+.| -+..|+.+|+.++ +.+.+.++.+|..|-.
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44566677788888888888888888887542 45564543 4678899998855 5677888777776643
No 232
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=54.48 E-value=1.4e+02 Score=25.55 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=55.9
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~ 352 (429)
+|.+-|. +.++..+-.|+.+|-.+..+ .......+.....+..|..++.. ..+.++++...+++...+
T Consensus 41 al~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 41 AIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 6677777 78999999999888876654 35688888888999999999988 678899999998877765
No 233
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.91 E-value=90 Score=25.95 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=27.7
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMAK 321 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~ 321 (429)
.|.+-|. +.++.++-.|+.+|-++|.. ++..+..+.+
T Consensus 42 ~L~kRL~-~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~ 79 (122)
T cd03572 42 YLLKRLK-RSSPHVKLKVLKIIKHLCEKGNSDFKRELQR 79 (122)
T ss_pred HHHHHhc-CCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 5677777 67788889999999999974 4566655555
No 234
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=53.33 E-value=1.2e+02 Score=25.52 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=54.2
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhCC-HHHHHHHHhCCchHHHHHHhhcC-CHH---HHHHHHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALLG-SPL---AQRRASKLLQWFKD 352 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~-~~~---~k~~A~~lL~~l~~ 352 (429)
.|.+-|. ++++..+..|+.+|-.+..++ +.....+.....+..|..++... ... +++++..+|+....
T Consensus 46 ~l~krl~-~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 46 ALRKRLK-HGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHT-TSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 6777777 799999999998888776654 56888888888999999988864 433 88998888877765
No 235
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=53.23 E-value=1.9e+02 Score=26.79 Aligned_cols=138 Identities=14% Similarity=0.023 Sum_probs=75.3
Q ss_pred HHHHHH-hhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc
Q 014196 116 IQMLVS-MVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS 194 (429)
Q Consensus 116 i~~Lv~-lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 194 (429)
++.|+. .-+..++..+...+.+|..++.++..+...+++ .|..+...+..+.+.-+...+..+-...+ ...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~-----~L~~L~~~~~~~~~~~~~rLl~~lw~~~~---r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQ-----TLVSLVEQGSLELRYVALRLLTLLWKAND---RHF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHH-----HHHHHHcCCchhHHHHHHHHHHHHHHhCc---hHH
Confidence 344444 445578999999999999999886223444333 24555555544443233334444432211 110
Q ss_pred cCCcHHHHHHhh--h------cCC-cHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhc-cCCc-chHHHHHHHHH
Q 014196 195 SSEILPFLVGIL--E------SGS-SVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKE-RLSEKSLATLG 263 (429)
Q Consensus 195 ~~g~i~~Lv~lL--~------~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL-~~~~-~~~~~a~~~L~ 263 (429)
+.+..++..+ + +++ ..+.......++..+|....++ -...++.+..+| .+.+ ..+..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 2333333331 1 111 1123333456788888766662 234577888888 5544 67777888888
Q ss_pred HhhC
Q 014196 264 NLVV 267 (429)
Q Consensus 264 ~La~ 267 (429)
.||.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 8883
No 236
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=1.9e+02 Score=32.09 Aligned_cols=208 Identities=14% Similarity=0.114 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHH-hh
Q 014196 128 IGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVG-IL 206 (429)
Q Consensus 128 ~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL 206 (429)
+-++-+|+..|..+...- .-+..+...+.+......|...++-+--+|...+..||.. -....+|-|.. ..
T Consensus 741 vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYL 812 (982)
T ss_pred ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHH
Confidence 345556666666666543 2344444555555555555544433223333333344421 12334565555 22
Q ss_pred hcCCc--HHHHHHHHHHHHHhccCCC-ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-h-hcHHHHhcCCC
Q 014196 207 ESGSS--VETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-S-TGKKAMEDSPL 280 (429)
Q Consensus 207 ~~~~~--~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~-e~~~~i~~~~~ 280 (429)
+..+. .+.+-..-.++.++..... -...-.+ -.+...+.-+++++ ..+..+++.|++||.- . .+...+.+
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e--- 888 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE--- 888 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH---
Confidence 22111 0112223355555543211 1111111 12233333445665 6788888999998862 2 11222222
Q ss_pred ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh---CCchHHHHHHhhcC-CHHHHHHHHHHH
Q 014196 281 VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK---SGIVHVSLQLALLG-SPLAQRRASKLL 347 (429)
Q Consensus 281 i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~---~G~v~~L~~ll~~~-~~~~k~~A~~lL 347 (429)
+...++.+...+++...+..|+..+..+-.+..+..-.+.+ -.....+....... .+.+|-.|...+
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 22345555554688889999998888765543222222221 12334444444443 444555555433
No 237
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=49.56 E-value=86 Score=27.29 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc
Q 014196 116 IQMLVSMVSTE-VIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS 194 (429)
Q Consensus 116 i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 194 (429)
++.|.++|+.+ +..++.+++.+|+.|..-| ..+-...+.+. +.-. -......... ..+....... .....-
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALD-P~~~k~~~~~~-~~~~--~~~~~~~~~~---~~l~~~~~~~-~~ee~y 83 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALD-PYKHKSIQKSL-DSKS--SENSNDESTD---ISLPMMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccC-cHHHhcccccC-Cccc--cccccccchh---hHHhhccCCC-chHHHH
Confidence 56677788765 5899999999999997665 35444322111 1000 0000011111 1111111100 111111
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN 264 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~ 264 (429)
-..++..|+++|++.+-..-...++.++.++-.... .+.... .-++|.++..++..+ ...|-.+.-|..
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234678899999887653445567777777664322 222121 356788888887553 555544444433
No 238
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.28 E-value=83 Score=34.05 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=66.5
Q ss_pred CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHH
Q 014196 196 SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKA 274 (429)
Q Consensus 196 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~ 274 (429)
.|.+.+|++-..+.+. .++..++..|.-|+.........+-.+....+..-+.|.. .++..|+-+|..+=..+..-
T Consensus 84 ~~~f~hlLRg~Eskdk-~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDK-KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHHhcccCcch-hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 3556666666666666 7888888888888875444555555677777777777765 78888998888776422110
Q ss_pred HhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 275 MEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
+.. +...++.++.+++++.++..|..
T Consensus 161 --e~~-v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 161 --ECP-VVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred --ccc-HHHHHHHHHhcCCcHHHHHHHHH
Confidence 111 22367777776778888766543
No 239
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=49.27 E-value=1.6e+02 Score=24.64 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=54.0
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhCC-HHHHHHHHhCCchHHHHHHhhcC---CHHHHHHHHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALLG---SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~---~~~~k~~A~~lL~~l~~ 352 (429)
+|-+-|. ++++..+..|+.+|-.+..+. ......+.....+..|+.++... .+.+|+++..+++....
T Consensus 41 aL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 41 AIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777777 789999999998888776654 45777787767777799988763 67899999998888776
No 240
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.25 E-value=19 Score=35.49 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhchHHHHHHHhcCcHHHHHHhh--cCCCHHHHHHHHHHHHHhccCCCchHHHHHhc
Q 014196 92 AAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV--STEVIGRRRAAIKALIQLANGTYTNKAIMVEA 155 (429)
Q Consensus 92 Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~ 155 (429)
....|..++...+++...+.+.||++.+++-. .+.||-+++-.+.++.+|..++.+|+..|.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 34466778877888999999999999877643 34579999999999999999988888877653
No 241
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.64 E-value=3e+02 Score=29.41 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch-
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN- 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n- 148 (429)
-.+.+..+++.+.+.+..++...+.-|+.+... ..--....-.|.+..|..-+.+..+.++..|+.+|..+-... .|
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~-~ne 166 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME-LNE 166 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-CCh
Confidence 345566777777788888888888888877632 122224444677788888777777899999999999886443 23
Q ss_pred HHHHHhcCccchhhhhccC-CCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 149 KAIMVEAGILTKLPKNVDA-VDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
...++. .|+.+++. ++.++|+. +|.+++.+....+.|
T Consensus 167 en~~~n-----~l~~~vqnDPS~EVRr~---allni~vdnsT~p~I 204 (885)
T COG5218 167 ENRIVN-----LLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCI 204 (885)
T ss_pred HHHHHH-----HHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhH
Confidence 223333 35666663 45666654 566777655544444
No 242
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=48.58 E-value=1.4e+02 Score=23.81 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHhccc--CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 285 LIEILTW--EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 285 Lv~~L~~--~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
+..++.| ......++.+...|..+..+ +...+.+.+-|++.-|-.+-..-++..+...-.++.
T Consensus 32 l~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 32 LKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4444444 34455778888888888765 556677888899988777776666766666655554
No 243
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.90 E-value=93 Score=27.85 Aligned_cols=74 Identities=22% Similarity=0.064 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
..++-++..|.+....++.-|...+..+.......+-.=+=.-.|.+|-..|.+.|+++...++.+|..|....
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 35888889998887778888888888777652222322222345777888889999999999999999986554
No 244
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.79 E-value=1.8e+02 Score=24.70 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~ 352 (429)
+|.+-|. ++++..+-.|+.+|-.+..+ .......+.+.+.+..|..++.. ..+.+|+++..+++.-.+
T Consensus 45 al~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 45 ALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 6777777 78999999998888776654 46688888889999999999875 467899999998887775
No 245
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=46.59 E-value=2.9e+02 Score=27.01 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-----cCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-----LGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-----~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~ 145 (429)
+.+..+++.|...+.+.++.++....++-+...+.|...++ ...+..||.- .. .+++--.+-..|.....+.
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirhe 156 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRHE 156 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhhH
Confidence 45678888888888888888888887777766666655544 2333444443 12 2454444445555555553
Q ss_pred CchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc---c---CC-cHHHHHHhhhcCCcHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS---S---SE-ILPFLVGILESGSSVETKELC 218 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~---~---~g-~i~~Lv~lL~~~~~~~~~~~A 218 (429)
.-...|.+..-+......++.+.-+.-..|..+...+-.. ++..++ . .. ....--.++.+++. -.++.+
T Consensus 157 -~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~--Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Ny-vtkrqs 232 (342)
T KOG1566|consen 157 -FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTR--HKSVVAEFLIRNYDNFFAEVYEKLLRSENY-VTKRQS 232 (342)
T ss_pred -HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHH--hHHHHHHHHHhChhhhHHHHHHHHhcccce-ehHHHH
Confidence 3444555555555556666665544444455555444322 122221 1 11 23335667888888 588999
Q ss_pred HHHHHHhccCCCChhHHH----hcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh
Q 014196 219 IGALYNLSAVLDNARPMV----SNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS 269 (429)
Q Consensus 219 ~~aL~nLs~~~~n~~~iv----~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~ 269 (429)
..+|..+-....|-..|. +...+..++.+|+++. .++-.|.-+-.-.+.+|
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999988877765543 3477888999999886 78888887777666543
No 246
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.87 E-value=1.9e+02 Score=24.49 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=54.7
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhc------CCHHHHHHHHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALL------GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~------~~~~~k~~A~~lL~~l~~ 352 (429)
+|.+-|. ++++..+-.|+.+|-.+..+ .......+...+.+.-|+.++.. ....+|++...+++.-.+
T Consensus 42 ai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 42 LLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777777 78999999999888876653 46688889989999999999963 357899999888877775
No 247
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=44.53 E-value=3.8e+02 Score=30.07 Aligned_cols=219 Identities=12% Similarity=0.094 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccc-cCCcHHHH
Q 014196 125 TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLS-SSEILPFL 202 (429)
Q Consensus 125 s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~L 202 (429)
+..|...-.+.+++...+.....|...+-. .+...+..+.... ...+..|..+++.-+ +.+.... ..+.+..|
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGL 535 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHH
Confidence 345665557777777555442223222111 1111223232212 334445555555555 2222211 35677778
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC--c-chHHHHHHHHHHhhCChhcHHHHhcCC
Q 014196 203 VGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK--E-RLSEKSLATLGNLVVTSTGKKAMEDSP 279 (429)
Q Consensus 203 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~--~-~~~~~a~~~L~~La~~~e~~~~i~~~~ 279 (429)
.++....+. ++-.....+|+..++.+.......+.-+.|..+.+.... + -+...+-.++..|+...++..-+.. -
T Consensus 536 ~qlas~~s~-evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~ 613 (1005)
T KOG2274|consen 536 LQLASKSSD-EVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-R 613 (1005)
T ss_pred HHHcccccH-HHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-H
Confidence 887766555 566667789999888777777777788888887765421 2 5566666666666654444333333 2
Q ss_pred CChHHHHHhcccCC---ChhHHHHHHHHHHHHhhCC-HHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Q 014196 280 LVPESLIEILTWEE---KPKCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 280 ~i~~~Lv~~L~~~~---s~~~~e~A~~~L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~ 352 (429)
.+|.||..|...+ .....--|+-+|..+-++. +..-+.++. -++|++..++.. ++...-..|..+|+-+-.
T Consensus 614 -~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 614 -LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred -HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 3458999987322 1233445556666555432 223333433 357888776654 455566777777766654
No 248
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.80 E-value=1.1e+02 Score=34.14 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHH-hcCc---cchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHH
Q 014196 127 VIGRRRAAIKALIQLANGTYTNKAIMV-EAGI---LTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFL 202 (429)
Q Consensus 127 ~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~---i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~L 202 (429)
|++++..|+.+|.|+....++++..+. .-|. =+.. .+=+..+.+..++...-.| ..+....+|..|
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~-~l~~~~ks~~le~~l~~mw---------~~Vr~ndGIkiL 744 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI-FLGAGTKSAKLEQVLRQMW---------EAVRGNDGIKIL 744 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc-cccCCCchHHHHHHHHHHH---------HHHhcCccHHHH
Confidence 689999999999999988766755433 2221 0000 0001111221222222222 234456789999
Q ss_pred HHhhhcCC----cHHHHHHHHHHHHHhccCCCChhHHHh-----cCcHHHHHH--hccCC--c--chHHHHHHHHHHhhC
Q 014196 203 VGILESGS----SVETKELCIGALYNLSAVLDNARPMVS-----NGVVHTLLK--LCSMK--E--RLSEKSLATLGNLVV 267 (429)
Q Consensus 203 v~lL~~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~-----~G~v~~Lv~--lL~~~--~--~~~~~a~~~L~~La~ 267 (429)
+++|+... ...++.-|+.+|.-|+.++.-++.+.. ...++.|+. .+.|. + .....|...|.....
T Consensus 745 l~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g 824 (1516)
T KOG1832|consen 745 LKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQG 824 (1516)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhC
Confidence 99998642 246888999999999999887655543 333343333 23332 1 445566666655443
No 249
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=43.68 E-value=1.4e+02 Score=32.33 Aligned_cols=187 Identities=10% Similarity=0.088 Sum_probs=110.0
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcH
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGK 272 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~ 272 (429)
..+.+|.|++|....+. .+|. ..|.++-...+.. ..+++.-++|.+..-+.|.+ .+++..+..+..|+..-.-+
T Consensus 328 q~~i~p~l~kLF~~~Dr-~iR~---~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDR-QIRL---LLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcch-HHHH---HHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 45689999999999886 5654 4555665544433 67788899999999888876 78888888887776522111
Q ss_pred HHHhcCCCChHHHHHhccc---CCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTW---EEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~---~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
..+ | -+++.+.+ +..+..+.+..-+|..++.+ ++..|..+ .+.++..-+.+.-..+|.++.+.+.
T Consensus 404 --~Ln-~----Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~v----L~~aftralkdpf~paR~a~v~~l~ 472 (690)
T KOG1243|consen 404 --NLN-G----ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRV----LASAFTRALKDPFVPARKAGVLALA 472 (690)
T ss_pred --hhc-H----HHHHHHHhhCccccCcccccceeeecccccccchhhhccc----cchhhhhhhcCCCCCchhhhhHHHh
Confidence 122 1 23333321 34445566666777777654 23333322 2344445556665667777777665
Q ss_pred HHHhccccCCCCCCCCCccccccC-CCCChhhhHHHHHHHHHHHHHHHHHh
Q 014196 349 WFKDERQAKMGPHSGPQTRRVSIG-SPVSPREAQEGKKMMKNLVQQSLHKN 398 (429)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~l~~~~~~~~~~~ 398 (429)
.-..... ....+-++...+... .+.+..-+..+.+++.+-.++..+-+
T Consensus 473 at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~~ 521 (690)
T KOG1243|consen 473 ATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKVS 521 (690)
T ss_pred hcccccc--hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhhhc
Confidence 4443211 111222333343322 33356667888888888877654444
No 250
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=43.19 E-value=1.7e+02 Score=23.45 Aligned_cols=71 Identities=14% Similarity=-0.007 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hHHHHHHHhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHh
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VKIKKLMAELGVIQMLVSMVS------TEVIGRRRAAIKALIQL 141 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~------s~~~~~~~~A~~aL~nL 141 (429)
...+..+.++|.+.++..+..|+..|..+.+.. +.....+.....+..++.+.. ..+..+++.+...+..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 557888889999999999999999999998755 345666666665555554311 12567888887766544
No 251
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.10 E-value=5.9e+02 Score=30.52 Aligned_cols=169 Identities=20% Similarity=0.178 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh---cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE---LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~---~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
||+|.+.=-.++..+|. |...|.+.--.++. .+++ ..+..-|+.-|.+.--.+||+++.||..|-.+.+ + .
T Consensus 1000 IPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k---~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~-~-~ 1073 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQD-AMTSIWNALITDSK---KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP-F-D 1073 (1702)
T ss_pred hHHHhhhccCCcHHHHH-HHHHHHHHhccChH---HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC-h-H
Confidence 34444433345555554 44455543322322 2222 2345555555666667899999999999987753 2 2
Q ss_pred HHHhc--CccchhhhhccCCCHHHHHHH---HHHHHHhhccC-CCccccc----cCCcHHHHHH--hhhcCCcHHHHHHH
Q 014196 151 IMVEA--GILTKLPKNVDAVDESTRHEF---GELLLSLSSLA-NTHIPLS----SSEILPFLVG--ILESGSSVETKELC 218 (429)
Q Consensus 151 ~iv~~--G~i~~Lv~lL~~~~~~~~~~a---a~~L~~Ls~~~-~~~~~i~----~~g~i~~Lv~--lL~~~~~~~~~~~A 218 (429)
.+.+. ..-..+.+.+..-...+|+.+ +.+|..|+..- +....-. -..++|.|.. ++ + +..++++-+
T Consensus 1074 ~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s-~v~evr~~s 1151 (1702)
T KOG0915|consen 1074 QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S-KVNEVRRFS 1151 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c-chHHHHHHH
Confidence 22221 111122333332234445443 33455444211 1100000 1223444443 22 2 234789999
Q ss_pred HHHHHHhccCCCChhHHHhcCcHHHHHHhccC
Q 014196 219 IGALYNLSAVLDNARPMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 219 ~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~ 250 (429)
+.++..|+.+....-.---...+|.|++..+.
T Consensus 1152 i~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 99999999865443222224566777766653
No 252
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=41.70 E-value=26 Score=37.10 Aligned_cols=54 Identities=15% Similarity=0.004 Sum_probs=43.0
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHh-ccc-cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQS-KSA-RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~-g~~-~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|--|+..-.-+.|.|| |.--+=+ |.+ .-+.||.-.+.+||..||+-|..+....
T Consensus 864 mkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k 921 (929)
T COG5113 864 MKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCK 921 (929)
T ss_pred ccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence 4457777777899999 8877644 444 7788998889999999999999887643
No 253
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=41.68 E-value=5.6e+02 Score=30.63 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHH-HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIK-KLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
.+..++..|.++....+-.|++.|..+..-++... ..-++.|+ -.-+.+....|+++|+..++.-....++.-..
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V----h~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV----HGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH----HHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 45667777787778899999999999887666422 22233333 33344566789999999988654433222222
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC-CcHH-HHHHHHHHHHHh
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG-SSVE-TKELCIGALYNL 225 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~-~~~~A~~aL~nL 225 (429)
..+ .+..-+......+|..+..+++.++.....-..+ ....+++|+.- +.+. +++-+..++.++
T Consensus 893 yY~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 893 YYD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 221 1233334455778899999999998554332222 33445555421 1112 455555555554
No 254
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.58 E-value=3.9e+02 Score=30.26 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=76.7
Q ss_pred cCcHHHHHHhhcC--------CCHHHHHHHHHHHHHhccC---CCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHH
Q 014196 113 LGVIQMLVSMVST--------EVIGRRRAAIKALIQLANG---TYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLL 181 (429)
Q Consensus 113 ~G~i~~Lv~lL~s--------~~~~~~~~A~~aL~nLa~~---~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 181 (429)
.|.++.+++.|.+ .++.-++.|+.++++|+.- ....+. .++.=.+..+...++++-.-.|..|++++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 3567778888872 2456678888888888621 111121 222222333344456666777888999999
Q ss_pred HhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHHHhc--CcHHHHHHhccC
Q 014196 182 SLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPMVSN--GVVHTLLKLCSM 250 (429)
Q Consensus 182 ~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~--G~v~~Lv~lL~~ 250 (429)
.++.-+ +.... -..++..-.+.|.+++...++..|+-||.-+-.+.+.. ..+-.. +.++.|+.+.++
T Consensus 488 ~~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 488 QFSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 888443 22221 22345666666664433368888999998876654433 333321 444445555543
No 255
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=41.12 E-value=1.2e+02 Score=27.03 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
.++.+++...+.+..++..|+..+....+..--|= .-++|.|+.|..++++.++..|...+..+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 35667776677788899999988887765431111 125899999999999999999999998886544
No 256
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=40.68 E-value=2.7e+02 Score=30.19 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=82.2
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhc-cCCCHHHHHHHHHHHHHhhccCCCc
Q 014196 112 ELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNV-DAVDESTRHEFGELLLSLSSLANTH 190 (429)
Q Consensus 112 ~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~~~~ 190 (429)
...++|.|...+++.+..+|+.++..+...+..-+ ...++.-.+|.+-.+- .......+.+++.++..+. +..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~l 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRL 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHH
Confidence 34568889999999999999999999988875542 3445555666665542 2334566777777777776 221
Q ss_pred cccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC
Q 014196 191 IPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 191 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
....-..-++++.+-.+..++ .+....+.+..++.....+...+....++|.++.+...+
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp-~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDP-AIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 111111224444444445565 566656666666665544434455567788888777654
No 257
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=40.52 E-value=1.1e+02 Score=31.21 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
..+|.+++..+..+.+.|..-+.+|..+.++-|.. ..+-+ ...+|.|++.|..+|.+++..++.+|..+..+.
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~-vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS-VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 45788888888777667778888888888876632 22223 357899999999999999999999998888765
No 258
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.18 E-value=3.3e+02 Score=32.36 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=81.0
Q ss_pred CcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh--hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhh-CChhcH
Q 014196 197 EILPFLVGILESGSSVETKELCIGALYNLSAVLDNA--RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV-VTSTGK 272 (429)
Q Consensus 197 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~--~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La-~~~e~~ 272 (429)
+.+..++..|..... .+|..|+++|.++...+... ...|..|+.. -+.|.. .+++.|+..++... ..++..
T Consensus 816 ~yLk~Il~~l~e~~i-alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~~DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI-ALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RLNDSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhcCchH-HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hhccchhHHHHHHHHHHhhhhhccHHHH
Confidence 345556666665554 78899999999998754432 3444444433 334454 88999999998433 345444
Q ss_pred HHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc---CCHHHHHHHHHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL---GSPLAQRRASKLLQW 349 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~---~~~~~k~~A~~lL~~ 349 (429)
..+-+ .+.+-+. +.+..+|.+++.+|..+|...|..-. .+.....++.. ....+++-+..++..
T Consensus 891 ~qyY~------~i~erIl-DtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 891 FQYYD------QIIERIL-DTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred HHHHH------HHHhhcC-CCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 33332 3444444 56778999999999999975433221 12222333332 222366666666655
Q ss_pred HHh
Q 014196 350 FKD 352 (429)
Q Consensus 350 l~~ 352 (429)
+.=
T Consensus 958 lWF 960 (1692)
T KOG1020|consen 958 LWF 960 (1692)
T ss_pred Hhc
Confidence 554
No 259
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.40 E-value=2.1e+02 Score=30.41 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=41.3
Q ss_pred cCCcHHHHHHh-hhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHH-HHHHHHhh
Q 014196 195 SSEILPFLVGI-LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKS-LATLGNLV 266 (429)
Q Consensus 195 ~~g~i~~Lv~l-L~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a-~~~L~~La 266 (429)
..|++..|+.. +.+++. +++++|+.||.-+|..+.+ .++..+++|.++. ..++.+ +-+|..-|
T Consensus 549 n~~vv~~lLh~avsD~nD-DVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiac 614 (926)
T COG5116 549 NLGVVSTLLHYAVSDGND-DVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIAC 614 (926)
T ss_pred cchhHhhhheeecccCch-HHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhh
Confidence 45677777777 555565 7999999999988876544 4666778887653 334433 33444433
No 260
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=39.40 E-value=6e+02 Score=28.60 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhh--cCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV--STEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+..+.+.....+.++-.--..+|...++-|++-. ...+.-+.|..+.+. .++||.+...+-.++..|+... .|..
T Consensus 531 ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g 608 (1005)
T KOG2274|consen 531 ILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYG 608 (1005)
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-Hhhc
Confidence 34444444443344555556667777888777533 333444566655544 3567877666666666555432 2322
Q ss_pred HHHhcCccchhhhhccCCC----HHHHHHHHHHHHHhhccCCCccccc---cCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 151 IMVEAGILTKLPKNVDAVD----ESTRHEFGELLLSLSSLANTHIPLS---SSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~----~~~~~~aa~~L~~Ls~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
.+. .-.||.++.+++... ......++..|-.+-... ...+. -.-+.|++.+..-+.+..+...++-.+|.
T Consensus 609 ~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t--p~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 609 PMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT--PSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred chH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC--CCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 222 246888999987655 333333344444343322 22232 24578888887655433356666777777
Q ss_pred Hhcc
Q 014196 224 NLSA 227 (429)
Q Consensus 224 nLs~ 227 (429)
.+-.
T Consensus 686 a~Is 689 (1005)
T KOG2274|consen 686 ALIS 689 (1005)
T ss_pred HHHh
Confidence 6543
No 261
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.27 E-value=5.6e+02 Score=28.22 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=42.5
Q ss_pred CcHHHHHHh-ccCCc-chHHHHHHHHHHhh-CChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC
Q 014196 239 GVVHTLLKL-CSMKE-RLSEKSLATLGNLV-VTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ 311 (429)
Q Consensus 239 G~v~~Lv~l-L~~~~-~~~~~a~~~L~~La-~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~ 311 (429)
++|..|+.. .+|.+ ++++.|+.+|.-++ .+|+ .+| ..|++|..+-++.+|--++.+|.--|++
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~-s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLP-STVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hch-HHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 466777776 55553 88888888887444 3543 344 6777776556788888888888876664
No 262
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.12 E-value=1.6e+02 Score=32.04 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=68.9
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh------cCcHHHHHHhccCCc-chHHHHHHHHHHhhC----
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS------NGVVHTLLKLCSMKE-RLSEKSLATLGNLVV---- 267 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~------~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~---- 267 (429)
...++.+|.+.+. .++...+.+..|+..+-.....|++ +..+..|++-+.|.. -++-+|+-++..++.
T Consensus 301 ~~~~~~LLdses~-tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSESF-TLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhcccch-hHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 3567788888876 6777777888898876554455665 233444445455554 567788888887765
Q ss_pred ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 268 TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 268 ~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
.+.-|+.+.+ ..+..+. +.+..++.+|+..+..+-
T Consensus 380 ~~~~r~ev~~------lv~r~lq-Drss~VRrnaikl~SkLL 414 (1128)
T COG5098 380 TVGRRHEVIR------LVGRRLQ-DRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred ccchHHHHHH------HHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 4555666654 3455555 677888999998887654
No 263
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=38.79 E-value=1.6e+02 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=22.8
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.++.|.++|+++.+..+|+.++++|..|-.-+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc
Confidence 456677777776555788888888887765443
No 264
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=38.28 E-value=3.3e+02 Score=25.20 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=81.5
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 74 LQKSVKRLH-FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 74 l~~lv~~L~-~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
++.++..+. ..++..+...+..|..++.++..+...+ +..|+.+.+.++.+.+--+...+..+...++ +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~--r~f- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAND--RHF- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc--hHH-
Confidence 345566554 3478888999999999998761222222 5567777777776665556666666665542 221
Q ss_pred HhcCccchhhhh--cc-----C-CC--HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhh-hcCCcHHHHHHHHHH
Q 014196 153 VEAGILTKLPKN--VD-----A-VD--ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGIL-ESGSSVETKELCIGA 221 (429)
Q Consensus 153 v~~G~i~~Lv~l--L~-----~-~~--~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~~A~~a 221 (429)
+.+..++.. ++ . .+ .+.....+..+..++....+ .-...++.+..+| .+.+. .++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~-~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDE-VAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccH-HHHHHHHHH
Confidence 222222222 11 1 11 22233345677888755543 1233678888888 55554 678888889
Q ss_pred HHHhc
Q 014196 222 LYNLS 226 (429)
Q Consensus 222 L~nLs 226 (429)
|..||
T Consensus 146 l~~Lc 150 (234)
T PF12530_consen 146 LAPLC 150 (234)
T ss_pred HHHHH
Confidence 99988
No 265
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=38.14 E-value=4.5e+02 Score=26.80 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhcc-CCCchHHHHHhcCcc
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-----VIGRRRAAIKALIQLAN-GTYTNKAIMVEAGIL 158 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~-~~~~nk~~iv~~G~i 158 (429)
+..+-.+|.+.|.++..+++..|+...+......+...+... -..++-.-+..|.-+.. +.+--.+.+++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 346778899999999999999999998887777776655321 11222222333333322 211124567789999
Q ss_pred chhhhhccC
Q 014196 159 TKLPKNVDA 167 (429)
Q Consensus 159 ~~Lv~lL~~ 167 (429)
+.+...++.
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999888864
No 266
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=37.53 E-value=1.3e+02 Score=32.65 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=67.7
Q ss_pred CccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHH
Q 014196 156 GILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPM 235 (429)
Q Consensus 156 G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 235 (429)
.++|.|...++..+...++.+...+-+.+..-+ ......-.+|.|-.+-...+...++.+++.++..+. +.....
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKA 463 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHH
Confidence 345555555555555566666666655553222 222234456666665433333357777887777776 222111
Q ss_pred HhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHH
Q 014196 236 VSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQEL 300 (429)
Q Consensus 236 v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~ 300 (429)
.-..-+.++....+..+ .++-..+.+..++.. ..+| ..+..+..+ |.++-+.. .+.-.+.++
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~Vl-Plli~ls~-~~~L~~~Qy 527 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVL-PLLIPLSV-APSLNGEQY 527 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhh-hhhhhhhh-cccccHHHH
Confidence 11223444444443333 566666666666554 4444 333333444 35555544 344334433
No 267
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.87 E-value=2.5e+02 Score=23.45 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=53.3
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhcC-C-HHHHHHHHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALLG-S-PLAQRRASKLLQWFKD 352 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~~-~-~~~k~~A~~lL~~l~~ 352 (429)
.|-+-|. ++++..+..|+.+|-.+..+ .......+...+.+..|..++... + +.+++++..+++.-.+
T Consensus 41 ~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 41 LLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 5677777 79999999999888876654 466888888888999999888874 3 3488888888777665
No 268
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.18 E-value=2.7e+02 Score=31.43 Aligned_cols=118 Identities=9% Similarity=0.074 Sum_probs=61.7
Q ss_pred Cccchhhhhcc------CCC--HHHHHHHHHHHHHhhccCCCccccc---cCCcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 156 GILTKLPKNVD------AVD--ESTRHEFGELLLSLSSLANTHIPLS---SSEILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 156 G~i~~Lv~lL~------~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
|.++.++.++. .+. ...+..|..++.+|+..=.-+.... +.=.++.+...+++... -+|..||+++..
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g-~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG-YLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh-HHHHHHHHHHHH
Confidence 45555666665 111 2233445556666663211111111 22234444455556554 578889999999
Q ss_pred hcc-CCCChhHHHhcCcHHHHHHhcc-CCc-chHHHHHHHHHHhhC-ChhcHHHHh
Q 014196 225 LSA-VLDNARPMVSNGVVHTLLKLCS-MKE-RLSEKSLATLGNLVV-TSTGKKAME 276 (429)
Q Consensus 225 Ls~-~~~n~~~iv~~G~v~~Lv~lL~-~~~-~~~~~a~~~L~~La~-~~e~~~~i~ 276 (429)
.|. .=.+...+ ..++.....+|. |.+ +++-.|+-+|.-+-. ++.....+.
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 983 22222111 234556666666 555 787778778875554 443334444
No 269
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.68 E-value=54 Score=31.66 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=39.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC--------------chHHHHHhcCccchhhhhcc
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANGTY--------------TNKAIMVEAGILTKLPKNVD 166 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~--------------~nk~~iv~~G~i~~Lv~lL~ 166 (429)
.|..+++-|.+.+...+..|+.+|..++.+.- .|-..+.+.|+++.|+.+|.
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 36678888998899999999999999986642 24555667788887777763
No 270
>COG4872 Predicted membrane protein [Function unknown]
Probab=35.08 E-value=21 Score=34.68 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=12.9
Q ss_pred hhhHH--HHHHHHhccc
Q 014196 12 QFFSR--IRQFIQSKSA 26 (429)
Q Consensus 12 ~TydR--Ie~W~~~g~~ 26 (429)
||++| |++|+++|-.
T Consensus 5 ~~~~r~di~~WldeG~I 21 (394)
T COG4872 5 QRKLRRDIESWLDEGII 21 (394)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 78888 9999999953
No 271
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=34.59 E-value=49 Score=31.96 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=41.2
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC---------------CChhHHHhcCcHHHHHHhcc
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVL---------------DNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~---------------~n~~~iv~~G~v~~Lv~lL~ 249 (429)
....+..++.-|..++. ..+..|+++|..++... .|...+.+.|++++|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~-~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDS-EDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccch-hhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34567777777777765 56778888888887642 46777889999999999985
No 272
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=33.99 E-value=3.1e+02 Score=29.26 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHhccCCCch---------HHHHHhcCccchhhhhcc----CCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 127 VIGRRRAAIKALIQLANGTYTN---------KAIMVEAGILTKLPKNVD----AVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 127 ~~~~~~~A~~aL~nLa~~~~~n---------k~~iv~~G~i~~Lv~lL~----~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
++.++..|+.++..+....-.+ ....+....++.+...+. ..+.+.+..+..+|.|+-.
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 4566677776766664321000 011112234455555444 1223334445566776652
Q ss_pred ccCCcHHHHHHhhhcC--CcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC
Q 014196 194 SSSEILPFLVGILESG--SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
...++.|..++... .+..++..|+.+|..+.....+ -+.+.++.++.+.
T Consensus 520 --~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~ 570 (618)
T PF01347_consen 520 --PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNT 570 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-T
T ss_pred --chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCC
Confidence 23578888887765 2235777787887766443221 2345667776654
No 273
>PRK14015 pepN aminopeptidase N; Provisional
Probab=33.95 E-value=4.9e+02 Score=29.42 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=62.0
Q ss_pred hhhHH-------HHHHHH--hccc----------cccCCCCCCCc-ccchhhHHHHHHHHHhhcccccCCCCCCCChhhH
Q 014196 12 QFFSR-------IRQFIQ--SKSA----------RRRQNEPNHNH-EKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDC 71 (429)
Q Consensus 12 ~TydR-------Ie~W~~--~g~~----------~T~~~L~~~~L-~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~ 71 (429)
.+|+| +.+||. .+.. .+.. +.+++ .||+ +|.+|-.++..|. +.... .+-..-
T Consensus 738 ~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h--p~f~~~npn~-~ral~~~f~~~n~---~~fh~--~~g~gy 809 (875)
T PRK14015 738 DFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQH--PAFDLKNPNR-VRSLIGAFAAANP---AGFHA--ADGSGY 809 (875)
T ss_pred HHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcC--CCCCCCCCcH-HHHHHHHHhhcCC---cccCC--CCCcHH
Confidence 68888 999995 2221 2222 24444 4887 5999999998882 11111 111122
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKA 137 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~a 137 (429)
..+...|-.|..-|+..-...+..+...-+-++..+..+.. .|-.++..+ +.++.|-.-.+
T Consensus 810 ~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~~~~-----~l~~i~~~~~ls~d~~e~~~~~ 872 (875)
T PRK14015 810 RFLADQILALDKINPQVAARLATPLIRWRRYDPKRQALMRA-----ALERIAALPNLSKDVREIVSKA 872 (875)
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHHHHHH-----HHHHHHhCcCCCccHHHHHHHH
Confidence 34555666666667776666666666666666554444433 344444443 23444444333
No 274
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.47 E-value=74 Score=26.02 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=33.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHh
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE 154 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~ 154 (429)
+|+.||.-|.++++++...|+.+|...+.++ .+...++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5889999999999999999999999999886 46565554
No 275
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=31.64 E-value=1.7e+02 Score=29.12 Aligned_cols=53 Identities=26% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
+..++.=|..+.+..+|+.++.-|..-+.++..+..+.+.|.+..++..+.+.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~ 75 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDA 75 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccc
Confidence 44555555544444688888888888888999999999999999999998654
No 276
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=31.22 E-value=6.7e+02 Score=26.69 Aligned_cols=209 Identities=19% Similarity=0.207 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHH----HHHHhcC---cHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIK----KLMAELG---VIQMLVSMVSTEVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r----~~i~~~G---~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 143 (429)
...+-.|++.|..-+.+.-......+..-. .....| +.+..+| ++..+.+++.+....-.+ |...|..|..
T Consensus 346 ~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~ 423 (618)
T PF01347_consen 346 LSKFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDE-AAQLLASLPF 423 (618)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHh
Confidence 445778888887765544333333332221 122334 3444455 566677777775433222 4455555544
Q ss_pred CC-CchHHHHHhcCccchhhhhccCC----CHHHHHHHHHHHHHh----hccC------CCccccccCCcHHHHHHhhhc
Q 014196 144 GT-YTNKAIMVEAGILTKLPKNVDAV----DESTRHEFGELLLSL----SSLA------NTHIPLSSSEILPFLVGILES 208 (429)
Q Consensus 144 ~~-~~nk~~iv~~G~i~~Lv~lL~~~----~~~~~~~aa~~L~~L----s~~~------~~~~~i~~~g~i~~Lv~lL~~ 208 (429)
.. ......+-+ +..++... ...++..|..++..| +... ...........++.|...+..
T Consensus 424 ~~~~Pt~e~l~~------l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 497 (618)
T PF01347_consen 424 HVRRPTEELLKE------LFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKE 497 (618)
T ss_dssp T-----HHHHHH------HHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHH
T ss_pred hcCCCCHHHHHH------HHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHH
Confidence 43 223333322 33444322 233444444344444 3221 011222234567778777762
Q ss_pred ----CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC---c-chHHHHHHHHHHhhC-ChhcHHHHhcCC
Q 014196 209 ----GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---E-RLSEKSLATLGNLVV-TSTGKKAMEDSP 279 (429)
Q Consensus 209 ----~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a~~~L~~La~-~~e~~~~i~~~~ 279 (429)
++. .-+..++.||.|+-. -..++.|..++.+. + .++-.|+.+|..++. +++ .+.
T Consensus 498 ~~~~~~~-~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~---~v~--- 560 (618)
T PF01347_consen 498 AVSRGDE-EEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE---KVR--- 560 (618)
T ss_dssp HHHTT-H-HHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH---HHH---
T ss_pred HhhccCH-HHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH---HHH---
Confidence 333 456778999999853 23677788777654 2 566667777776644 232 111
Q ss_pred CChHHHHHhccc-CCChhHHHHHHHHHHH
Q 014196 280 LVPESLIEILTW-EEKPKCQELSAYILMI 307 (429)
Q Consensus 280 ~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~ 307 (429)
+.|..++.+ ....+.|-.|..+|+.
T Consensus 561 ---~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 561 ---EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp ---HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred ---HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 255665542 2345566666555543
No 277
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=29.95 E-value=68 Score=26.05 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC
Q 014196 216 ELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 216 ~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
...+..|..|+..|+--..+++.|+++.|+.||.+.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 346778889999998778999999999999999864
No 278
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.79 E-value=1.7e+02 Score=24.17 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=42.9
Q ss_pred HHHHHHhhhcCCc---HHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHH
Q 014196 199 LPFLVGILESGSS---VETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATL 262 (429)
Q Consensus 199 i~~Lv~lL~~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L 262 (429)
+..+.+++..... .+....++.++..... --....+.+.+.++.+..+|.++ .+.+.|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~~-~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQSP-ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTSC-CCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCCH-HHHHHHHHhC
Confidence 4555555554332 3677788888888776 34556777788999999999665 6777777665
No 279
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=29.06 E-value=1.3e+02 Score=26.02 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=18.3
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHh
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNL 225 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 225 (429)
-|.+|+.+|.+.+. .+...|+.+|.+-
T Consensus 95 NV~~LI~~L~~~d~-~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 95 NVQPLIDLLKSDDE-ELAEEAAEALKNT 121 (154)
T ss_dssp THHHHHHGG--G-T-TTHHHHHHHHHT-
T ss_pred cHHHHHHHHcCCcH-HHHHHHHHHHHhh
Confidence 47899999977766 5677788888764
No 280
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=28.25 E-value=37 Score=19.82 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 215 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
+..|+.+|.++.. ..++++|++.|.
T Consensus 2 R~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 4566777766554 345677776664
No 281
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=28.10 E-value=3.4e+02 Score=22.57 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HHHHHHHh-cCcHHHHHHhhc
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KIKKLMAE-LGVIQMLVSMVS 124 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~r~~i~~-~G~i~~Lv~lL~ 124 (429)
..+..|.++|...++.+|.+++..|..++...+ ..+..+.+ .-.|..+...=.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 456788899998889999999999999986554 45555554 345555555443
No 282
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=27.08 E-value=3.3e+02 Score=21.76 Aligned_cols=78 Identities=8% Similarity=-0.063 Sum_probs=48.0
Q ss_pred HHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC
Q 014196 47 NCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE 126 (429)
Q Consensus 47 I~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~ 126 (429)
+..||..|. ......+..+.+.+....+..|..++..+-.+++....-..........+.+.......
T Consensus 24 lt~~a~~~~------------~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~ 91 (114)
T cd03562 24 LTKLAIENR------------KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKV 91 (114)
T ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhC
Confidence 347998771 12344566666777777778888888888888876533223333333366666666666
Q ss_pred CHHHHHHHHH
Q 014196 127 VIGRRRAAIK 136 (429)
Q Consensus 127 ~~~~~~~A~~ 136 (429)
++.+++.-..
T Consensus 92 ~~~~r~kl~r 101 (114)
T cd03562 92 DEKTRKKLER 101 (114)
T ss_pred CHHHHHHHHH
Confidence 7776665433
No 283
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.75 E-value=1.7e+02 Score=30.99 Aligned_cols=17 Identities=12% Similarity=-0.005 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhcCCCH
Q 014196 70 DCVLLQKSVKRLHFGSW 86 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~ 86 (429)
+.+....|+..|.+.|.
T Consensus 223 Da~~a~~L~~kL~~end 239 (926)
T COG5116 223 DAEKAKALIEKLVKEND 239 (926)
T ss_pred cHHHHHHHHHHHHhhhh
Confidence 45566677777766543
No 284
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=24.20 E-value=54 Score=28.21 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=32.6
Q ss_pred hhhhhhHH-HHHHHHhccccccCCCCCCCcccchhhHHHHHHHHH
Q 014196 9 MRLQFFSR-IRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEK 52 (429)
Q Consensus 9 ~~~~TydR-Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~lI~~W~~ 52 (429)
-+|.+||| --+|+++| +|.-.+.+..++-+|=+++++. +|+
T Consensus 2 ~~G~sYd~LFg~Yl~d~--~~~I~ieDPYir~~hQi~Nl~~-F~E 43 (148)
T cd02685 2 ATGFSYDRLFGPYLDDG--VTEITVEDPYIRNFHQIRNFLR-FCE 43 (148)
T ss_pred CCcccHHHHHHHHHhCC--ceEEEEeCccccchHHHHHHHH-HHH
Confidence 36899999 89999988 4666677888888999888875 444
No 285
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.93 E-value=3.5e+02 Score=28.12 Aligned_cols=98 Identities=10% Similarity=0.038 Sum_probs=68.9
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HH
Q 014196 28 RRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KI 106 (429)
Q Consensus 28 T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~ 106 (429)
|...|.. |+++ ++-+.|..-. .... ...+.+..+.++|.+.++.++.-|+..|..+.+... ..
T Consensus 10 T~~~l~~----pDWa---~NleIcD~IN-----~~~~----~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~f 73 (470)
T KOG1087|consen 10 TSESLAE----PDWA---LNLEICDLIN-----STEG----GPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSF 73 (470)
T ss_pred hcccccC----ccHH---HHHHHHHHHh-----cCcc----CcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHH
Confidence 5555554 7777 3556665320 1111 124678889999998888899999998887776443 35
Q ss_pred HHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 014196 107 KKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQL 141 (429)
Q Consensus 107 r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nL 141 (429)
...|++.+++.-+|.+.+.. +..+|+.++..|-..
T Consensus 74 h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 74 HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 56888899999999988764 678999998887654
No 286
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=23.75 E-value=1.3e+02 Score=31.36 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=40.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHHHHhh
Q 014196 119 LVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSLS 184 (429)
Q Consensus 119 Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 184 (429)
|-.+....++++++.|..++.+++++. +||.... +...-..++.++-.+.++.-+.++.++..+-
T Consensus 333 lk~~~a~~n~~l~~qa~~~v~~~~~~~-~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 333 LKSLCAHKNPELQRQALLAVGNLAFCL-ENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHhcccChHHHHHHHHHHHHheecc-cccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 333445578999999999999999998 4765433 3333334556665555444444444544443
No 287
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.67 E-value=4.5e+02 Score=22.22 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=70.5
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhc-h
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHF-GSWEEKEMAAKEIEKLAKED-V 104 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~-~ 104 (429)
.|-..+.. ||.. +|-+-|... . ..+ ......+..+-++|.+ .++.++..|+..|..+.+.. .
T Consensus 9 ATse~l~~----~dw~---~ileicD~I---n--~~~----~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~ 72 (141)
T cd03565 9 ATDGSLQS----EDWG---LNMEICDII---N--ETE----DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH 72 (141)
T ss_pred HcCcCCCC----cCHH---HHHHHHHHH---h--CCC----CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH
Confidence 35554544 6666 566777643 1 111 1236678888999985 48889999999988888754 3
Q ss_pred HHHHHHHhcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHhcc
Q 014196 105 KIKKLMAELGVIQM-LVSMVST---EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 105 ~~r~~i~~~G~i~~-Lv~lL~s---~~~~~~~~A~~aL~nLa~ 143 (429)
.....++..+++.- |+.++.. .+..++...+..+...+.
T Consensus 73 ~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 73 RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 56677888888986 9999963 245888888888887763
No 288
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.94 E-value=9.3e+02 Score=26.77 Aligned_cols=114 Identities=13% Similarity=0.193 Sum_probs=69.2
Q ss_pred CcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhh-CChhcHHH
Q 014196 197 EILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV-VTSTGKKA 274 (429)
Q Consensus 197 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La-~~~e~~~~ 274 (429)
.+|..|..+....-. .++..++.++++|-.+..... ...+..||.-|.|+. .+..+|...|..|. .+|..+..
T Consensus 304 rfievLe~lS~D~L~-~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLE-EVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHccccHH-HHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 345555555444443 788999999999877654432 234566788888886 88888888887554 57876655
Q ss_pred HhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHh--hCCHHHHHHHHh
Q 014196 275 MEDSPLVPESLIEILTW-EEKPKCQELSAYILMILA--HQSSEQRDKMAK 321 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~--~~~~~~~~~i~~ 321 (429)
|+. .+.+++-+ +.+..++-+|+-.|-.+. +...+++..++.
T Consensus 379 vi~------EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 379 VID------EIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred hHH------HHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 543 23444331 345556666666665433 333445555554
No 289
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.12 E-value=9.2e+02 Score=29.06 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=115.3
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH-HHHHhcCccchhhhhccCCC----HHHHHH---
Q 014196 104 VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK-AIMVEAGILTKLPKNVDAVD----ESTRHE--- 175 (429)
Q Consensus 104 ~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk-~~iv~~G~i~~Lv~lL~~~~----~~~~~~--- 175 (429)
+..|..+++.|..-.++..+++.|+.++..|.+++...-.|. +|. +...+.-.+-.+..+.+.+. +.....
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHL-e~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~al 1507 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHL-ENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICAL 1507 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHH
Confidence 345558889999999999999999999999988776655554 453 22222223334444444322 111111
Q ss_pred HHHHHHHhhccC--CCcc---------ccccCCcHHHHHHhhhcCCc--HHHHHHHHHHHHHhccCCCChhHHHhcCcHH
Q 014196 176 FGELLLSLSSLA--NTHI---------PLSSSEILPFLVGILESGSS--VETKELCIGALYNLSAVLDNARPMVSNGVVH 242 (429)
Q Consensus 176 aa~~L~~Ls~~~--~~~~---------~i~~~g~i~~Lv~lL~~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~ 242 (429)
..+-...++..+ .+.. .+.+-.++|.+-+++.+... ...+.-....++..-............+.+.
T Consensus 1508 F~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~ 1587 (1758)
T KOG1791|consen 1508 FIAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFE 1587 (1758)
T ss_pred HHHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhhhHHhhcCcce
Confidence 112233333333 1222 22355678888888776432 1234555555555555666666677778888
Q ss_pred HHHHhccCC--c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcc
Q 014196 243 TLLKLCSMK--E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 243 ~Lv~lL~~~--~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
.++.....+ + ..+.-.+.+|.+-+..|.....+.+..|+...++.++.
T Consensus 1588 ~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~ 1638 (1758)
T KOG1791|consen 1588 TLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIP 1638 (1758)
T ss_pred EeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhcc
Confidence 887777654 2 55566778888877888777788777888778888887
No 290
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.10 E-value=55 Score=29.97 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.4
Q ss_pred hhhhhhHHHHHHHHhc
Q 014196 9 MRLQFFSRIRQFIQSK 24 (429)
Q Consensus 9 ~~~~TydRIe~W~~~g 24 (429)
+|-+|||.++||+.+=
T Consensus 97 Tr~~Tfenv~rWL~EL 112 (222)
T KOG0087|consen 97 TRRQTFENVERWLKEL 112 (222)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4669999999999864
No 291
>PLN03205 ATR interacting protein; Provisional
Probab=21.92 E-value=2.8e+02 Score=28.11 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=62.5
Q ss_pred HHHHHhccCC-cchHHHHHHHHHHhhCC-hhcHHHHhcC--CCChHHHHHhccc----CCChhHHHHHHHHHHHHhhCC-
Q 014196 242 HTLLKLCSMK-ERLSEKSLATLGNLVVT-STGKKAMEDS--PLVPESLIEILTW----EEKPKCQELSAYILMILAHQS- 312 (429)
Q Consensus 242 ~~Lv~lL~~~-~~~~~~a~~~L~~La~~-~e~~~~i~~~--~~i~~~Lv~~L~~----~~s~~~~e~A~~~L~~L~~~~- 312 (429)
.+|++|..-. ..++.+++.+|..+-.+ -.+++.+... -..+ .|.+++.+ +..+.++-.|+.++-.+...+
T Consensus 326 EaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 326 EPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 3455554432 35666666666543331 1112222211 1122 45555532 223344556666665554432
Q ss_pred -HHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc
Q 014196 313 -SEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 313 -~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~~~ 354 (429)
...|+.....-++..+-.+++. +...+|+.|..+|.+|-.+|
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 3466666666788888888886 57899999999887776655
No 292
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=21.84 E-value=47 Score=22.19 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=10.6
Q ss_pred cchhhhhhhhHH-HHH
Q 014196 5 SSSYMRLQFFSR-IRQ 19 (429)
Q Consensus 5 ~~~~~~~~TydR-Ie~ 19 (429)
.+.|-+|.+||+ |++
T Consensus 24 ~~yYe~Gi~Ye~~~~~ 39 (46)
T PF09145_consen 24 NDYYERGILYEDLIEK 39 (46)
T ss_dssp HHHHHHH-SSHHHHHH
T ss_pred HHHHHcCchHHHHHHH
Confidence 356889999998 654
No 293
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=21.60 E-value=7.8e+02 Score=24.93 Aligned_cols=88 Identities=8% Similarity=-0.009 Sum_probs=64.7
Q ss_pred HHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhc
Q 014196 46 INCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVS 124 (429)
Q Consensus 46 lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~ 124 (429)
+|-..|...+ .++ ......+..+.++|...++.+...|+..+-.+... ....|..+....+..-|-.++.
T Consensus 28 ~IlDvCD~v~-----~~~----~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 28 LILDVCDKVG-----SDP----DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred HHHHHHHhhc-----CCC----cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHh
Confidence 5777776441 111 23466799999999999999999999988887653 3457788888888888889988
Q ss_pred -CCCHHHHHHHHHHHHHhc
Q 014196 125 -TEVIGRRRAAIKALIQLA 142 (429)
Q Consensus 125 -s~~~~~~~~A~~aL~nLa 142 (429)
+..+.+++.-...+-+++
T Consensus 99 ~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 99 SKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred hcccHHHHHHHHHHHHHHH
Confidence 566778777666666655
No 294
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=20.76 E-value=7.8e+02 Score=24.64 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHhccCCCchHH----------
Q 014196 87 EEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS------TEVIGRRRAAIKALIQLANGTYTNKA---------- 150 (429)
Q Consensus 87 ~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~~~nk~---------- 150 (429)
..+..|..-|+.++++-.+.-..+. ...+-.+|. +.+...++.|+..+..|+......+.
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 3445677778888864322111111 112233333 34567888999999999876532111
Q ss_pred --HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHH
Q 014196 151 --IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGAL 222 (429)
Q Consensus 151 --~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 222 (429)
.....-.+|-|.. -.+..+-.+..|...+......- .+.. -.+.+|.++..|.+++. -+...|+.++
T Consensus 302 v~~Ff~~~v~peL~~-~~~~~piLka~aik~~~~Fr~~l-~~~~--l~~~~~~l~~~L~~~~~-vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQP-DVNSHPILKADAIKFLYTFRNQL-PKEQ--LLQIFPLLVNHLQSSSY-VVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHH--HHHHHHHHHHHTTSS-H-HHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcc-cCCCCcchHHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCCc-chhhhhhhhC
Confidence 1112222222210 00111223333444444333211 1111 24579999999999887 5777777654
No 295
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.45 E-value=1.4e+02 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.099 Sum_probs=31.4
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS 237 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 237 (429)
+|+.|++-|.+.+. ++...|+.+|...|..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~-~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSP-EVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHHHhchhhHHHHHH
Confidence 57889998888887 7888899999999988765555554
No 296
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.31 E-value=2.6e+02 Score=27.40 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHhcC--ccchhhhhccCCC---HHHHHHHHHHHHHhhccCCCccccc-------cC
Q 014196 129 GRRRAAIKALIQLANGTYTNKAIMVEAG--ILTKLPKNVDAVD---ESTRHEFGELLLSLSSLANTHIPLS-------SS 196 (429)
Q Consensus 129 ~~~~~A~~aL~nLa~~~~~nk~~iv~~G--~i~~Lv~lL~~~~---~~~~~~aa~~L~~Ls~~~~~~~~i~-------~~ 196 (429)
.++-.|+..|.++.... .....+...+ .+.-|+.+|+..+ ..++..|..+|..++........|. .+
T Consensus 237 ~iRllAi~~l~~~~~~~-~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPES-QFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCCCH-HHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Q ss_pred CcHHHHHH
Q 014196 197 EILPFLVG 204 (429)
Q Consensus 197 g~i~~Lv~ 204 (429)
|.++.+++
T Consensus 316 GiL~~llR 323 (329)
T PF06012_consen 316 GILPQLLR 323 (329)
T ss_pred ccHHHHHH
Done!