BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014198
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYI|A Chain A, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|B Chain B, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|C Chain C, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|D Chain D, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
Length = 382
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 45/188 (23%)
Query: 234 VESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGE- 292
V ++ VV+A G WSG F F+ GL ++ P +GE
Sbjct: 206 VWANHVVVASGVWSGMF------FKQLGLNN--------------------AFLPVKGEC 239
Query: 293 -----GGKPMDPEVY-------PRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRV 340
P+ +Y PR +G + + + + P D ++ + +
Sbjct: 240 LSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETP-----DLGGLESVMKK 294
Query: 341 ARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGA 400
A+T+ + + +V A P T DG P IG P GH GIL PATGA
Sbjct: 295 AKTMLPAI-QNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGA 353
Query: 401 ALAELVMD 408
+++L+M+
Sbjct: 354 LISDLIMN 361
>pdb|3IF9|A Chain A, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|B Chain B, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|C Chain C, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|D Chain D, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
Length = 382
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 45/188 (23%)
Query: 234 VESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGE- 292
V ++ VV+A G WSG F F+ GL ++ P +GE
Sbjct: 206 VWANHVVVASGVWSGMF------FKQLGLNN--------------------AFLPVKGEC 239
Query: 293 -----GGKPMDPEVY-------PRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRV 340
P+ +Y PR +G + + + + P D ++ + +
Sbjct: 240 LSVWNDDIPLTKTLYHDACYIVPRKSGRLVVGATMKPGDWSETP-----DLGGLESVMKK 294
Query: 341 ARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGA 400
A+T+ + + +V A P T DG P IG P GH GIL PATGA
Sbjct: 295 AKTMLPAI-QNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGA 353
Query: 401 ALAELVMD 408
+++L+M+
Sbjct: 354 LISDLIMN 361
>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 382
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 359 ACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSR 418
A + T D P IG + + Y+ G + G + PA G +AEL+ G + +
Sbjct: 305 AGYYAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTKL-PVEW 363
Query: 419 FSPARFGR 426
+ P RF R
Sbjct: 364 YDPYRFER 371
>pdb|1NG3|A Chain A, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG3|B Chain B, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG4|A Chain A, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
pdb|1NG4|B Chain B, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
Length = 390
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 45/188 (23%)
Query: 234 VESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGE- 292
V ++ VV+A G WSG F F+ GL ++ P +GE
Sbjct: 214 VWANHVVVASGVWSGMF------FKQLGLNN--------------------AFLPVKGEC 247
Query: 293 -----GGKPMDPEVY-------PRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRV 340
P+ +Y PR +G + + + + P D ++ + +
Sbjct: 248 LSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETP-----DLGGLESVMKK 302
Query: 341 ARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGA 400
A+T+ + + +V A P T DG P IG P GH GIL PATGA
Sbjct: 303 AKTMLPPI-QNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGA 361
Query: 401 ALAELVMD 408
+++L+M+
Sbjct: 362 LISDLIMN 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,028,406
Number of Sequences: 62578
Number of extensions: 483044
Number of successful extensions: 990
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 15
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)