BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014198
(429 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10058|YAM3_SCHPO Putative oxidoreductase C1F5.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1F5.03c PE=3 SV=1
Length = 382
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 196/398 (49%), Gaps = 51/398 (12%)
Query: 52 SKKHVAVCGGGIIGVCTAYFLA------KKGAAVTLIEKSSVACAASGKAGGFLALDWCD 105
+ +++ + GGGI GV YFLA + +TL E + +A AASGKA GFL+L+W
Sbjct: 3 NSRNIVIVGGGITGVSCLYFLAHHPSFNRDRDTITLFESAGIASAASGKASGFLSLEW-H 61
Query: 106 GGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPS 165
G SSLA S+NLH+ L+++ +G + +GYRAL T S+ E+ Q K + PS
Sbjct: 62 GPSTSSLAALSYNLHKELSDQYDGVNKWGYRALDTWSIKADENCQQPDKLPEGIEWIAPS 121
Query: 166 WVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVES 225
V+ R +G+ + + QVHP F + +A + +V G V V E VE
Sbjct: 122 IVENVTR----LGNKKNSGQVHPYKFCHAIYEEASKVANVTLVKGHVLSVDENE---VEY 174
Query: 226 VMIEGG------------------RVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSI 267
+I +E+ +++A GPW+ + L R+SG + HSI
Sbjct: 175 RLIGDDYAPDEEEEITSAEELHTIHSMEATHIIVAAGPWTPQ---LIPNLRISGARIHSI 231
Query: 268 ILE-PKEADAITPHALF--LSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDP 324
++ P + + +A+F ++Y + G PE Y R E+Y+CG ++ +P+
Sbjct: 232 TIDLPIKLNG---NAVFSEITY-----KDGTIAAPEFYAR-EDELYVCGEFDDEPLPELS 282
Query: 325 ETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTD-DGVPVIGELPGIKGCYV 383
D ++K+ A + ++ VK QAC+LP ++ G PVIG++ YV
Sbjct: 283 SDTKVDQDKCALIKQCANHF-HQIIRDSPVKVRQACYLPISNATGAPVIGKIG--SSIYV 339
Query: 384 GTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSP 421
H CWGI GP TG L+EL++DG + ++ P
Sbjct: 340 AAAHGCWGITLGPGTGKVLSELILDGAVTSANIDLLDP 377
>sp|P38758|TDA3_YEAST Putative oxidoreductase TDA3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TDA3 PE=1 SV=2
Length = 523
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 144/290 (49%), Gaps = 55/290 (18%)
Query: 175 TTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGE--------------- 219
+++G T TTAQ+HP FT +L+KA+ +++++GKV + E
Sbjct: 242 SSLGGTDTTAQLHPYKFTHFILSKAMETGAVDLLLGKVVGLKCDEMDCVHSLKYLPSVVK 301
Query: 220 -----GGRVESVMIEGGRVVESD-----------AVVLALGPWSGKFELLASMFRVSGLK 263
G E+ I+ G + + +VL++GPW+ K + +SGL+
Sbjct: 302 NRRNSRGHAENPDIKLGTIFNDENAKPIEINDIQQIVLSMGPWTSK---ILKDCPISGLR 358
Query: 264 AHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCG----MSSEQE 319
AHS+ ++P E ++P+A+ E PE+Y R EVY+CG + + E
Sbjct: 359 AHSVTIKPSEK-TVSPYAILAELKVNDREF---FSPEMYAR-KDEVYVCGEGDTLVNIPE 413
Query: 320 VPDDPETVSGDPASI-QVLKRVARTVSSHLGEEAQVKAEQACFLPC----TDDGVPVIGE 374
DD E VS + + +++ T+S + + +QACFLP T G P+IGE
Sbjct: 414 SSDDVEVVSEKCDELYHYVSKLSPTLS-----KGHLLRKQACFLPVLNVPTSSG-PLIGE 467
Query: 375 LPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARF 424
+K Y+ +GH+CWGI N PATG +AE+++DG A+ ++S P +
Sbjct: 468 T-NVKDLYIASGHSCWGINNAPATGKLMAEILLDGEATSAEISSLDPKLY 516
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 10/97 (10%)
Query: 53 KKHVAVCGGGIIGVCTAYFLAKKGA------AVTLIEKSSVACAASGKAGGFLALDWCDG 106
KKH+ + GGGIIG CTAY+L + + +T+IE +A ASGKAGG LA W
Sbjct: 21 KKHIVIVGGGIIGCCTAYYLTQHPSFSPSTHHITIIESRRIAGGASGKAGGLLA-SWAFP 79
Query: 107 GPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSL 143
+ L SF LH+ L++E +G +N+ YR LTT+SL
Sbjct: 80 HQIVPL---SFQLHQELSDEYDGENNWDYRRLTTVSL 113
>sp|O32159|YURR_BACSU Uncharacterized oxidoreductase YurR OS=Bacillus subtilis (strain
168) GN=yurR PE=3 SV=1
Length = 372
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 161/391 (41%), Gaps = 46/391 (11%)
Query: 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD---GGPLS 110
K + G GI+G TAY LAK GA VT+I++ A AG + W
Sbjct: 2 KSYIIVGAGILGASTAYHLAKTGARVTVIDRKEPGQATDAAAG--IVCPWLSQRRNQDWY 59
Query: 111 SLARASFNLHRSLAEEL--NGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVD 168
LA+ ++ L +L +G + GY+ + +S+ SK D
Sbjct: 60 QLAKGGARYYKDLIHQLEKDGESDTGYKRVGAISI-----HTDASKLDKMEERAYKRRED 114
Query: 169 GPARSPTTIGSTQTTAQVHPQL---FTKTLLNKA--VNDYGL-EVVIGKVERVGVGEGGR 222
P T S T ++ P L + ++ A VN L ++ E+ G
Sbjct: 115 APEIGDITRLSASETKKLFPILADGYESVHISGAARVNGRALCRSLLSAAEKRGATVIKG 174
Query: 223 VESVMIEGGRVV---------ESDAVVLALGPWSGK-FELLASMFRVSGLKAHSIILEPK 272
S++ E G V +DAV++ G W+ + + L F+VS KA + E
Sbjct: 175 NASLLFENGTVTGVQTDTKQFAADAVIVTAGAWANEILKPLGIHFQVSFQKAQIMHFEMT 234
Query: 273 EADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVP-DDPETVSGDP 331
+AD + + P D + G + + G + E + DD +G
Sbjct: 235 DADTGSWPVVM-----------PPSDQYILSFDNGRI-VAGATHENDAGLDDLRVTAG-- 280
Query: 332 ASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWG 391
+VL + A V+ L + A V+ + F P T +PV+G +P ++G Y G G
Sbjct: 281 GQHEVLSK-ALAVAPGLADAAAVET-RVGFRPFTPGFLPVVGAVPNVQGLYAANGLGASG 338
Query: 392 ILNGPATGAALAELVMDGCASIVDLSRFSPA 422
+ GP GA LA+LV+ G + +DLS + PA
Sbjct: 339 LTMGPFLGAELAKLVL-GKQTELDLSPYDPA 368
>sp|O14252|YE66_SCHPO Putative oxidoreductase C6G10.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC6G10.06 PE=2 SV=1
Length = 376
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 138/354 (38%), Gaps = 32/354 (9%)
Query: 67 CTAYFLA-----KKGAA-VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLH 120
CTA++L KKG + + E +A +SG L C + L+ + L+
Sbjct: 24 CTAFYLTEEQEYKKGELDIFIFESKEIAGGSSGIDSAILT-KLCQNEIIQPLSTLALKLY 82
Query: 121 RSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSP----TT 176
L ++ +G N+ YR S K N + +P + R ++
Sbjct: 83 EGLDKKFDGKKNWEYRT--------ANSWFCKMKWDNTNVAKVPDTLQWLQRERMQKCSS 134
Query: 177 IGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRV-VE 235
IGS A ++P+LF + + K + G++ + G V+ V V E + +
Sbjct: 135 IGSGNDFAMINPKLFCQ-FMAKEIEKRGVKFIFGSVKEVSKHHITYVPKQEAEDTIIKAQ 193
Query: 236 SDAVVLALGPWSGKFELLASMFRVSGLKAHSI-ILEPKEADAITPHALFLSYYPAQGEGG 294
+++ GPW+G + +G+ I I+ + ++ + G
Sbjct: 194 VHKTLVSAGPWTG------YLLPFTGIAGLCIPIIHLSVGNFPVGDSIVVCCLNTMGNLN 247
Query: 295 KPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQV 354
E++ + ++ G +P D +P I LK + V S + +
Sbjct: 248 ICKTTEIFSKNREQLIFMGTPKFHLLPKDSNRCFFNPFEIIELKEMTDLVLSENTKSNYL 307
Query: 355 KAEQACFLPCTD-DGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407
A FLP + G+P+I G +V GH WGI PATG +AE+++
Sbjct: 308 DASFK-FLPTSRITGIPIISTTKS--GVFVAAGHANWGITQAPATGLCMAEMLL 358
>sp|P33642|Y4548_PSEAE Probable D-amino acid oxidase PA4548 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4548 PE=3 SV=3
Length = 364
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 153/379 (40%), Gaps = 54/379 (14%)
Query: 66 VCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLA--LDWCDGGPLSSLARASFNLHRSL 123
+ TA LA G VTL+E+ AS GG ++ W +++LA S + + +L
Sbjct: 15 LLTARELALAGLRVTLVERGESGREASWAGGGIVSPLYPWRYSPAVTALAHWSQDFYPAL 74
Query: 124 AEEL---NGPDNYGYRA-LTTLSLT-VTESQQSGSK--------PSNKANSLIPSWVDGP 170
+ L G D + L L L TE+ Q K P +A + +P G
Sbjct: 75 GQRLLDETGLDPEVHTVGLYWLDLDDQTEALQWARKHTRPLKEVPIEEAYAAVPGLGAGF 134
Query: 171 ARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEG 230
R+ G A V ++L LE+ R + +G RV V
Sbjct: 135 QRAVYMSG----VANVRNPRLARSLRASLQQFANLELHEQTEVRGWLRDGDRVVGVATSR 190
Query: 231 GRVVESDAVVLALGPWSGKFELLASM---FRVSGLKAHSIILEPKEADAITPHALFLSYY 287
G + D V+LA G WSG ELL + V +K +IL AD + L Y
Sbjct: 191 GEI-RGDKVLLAAGAWSG--ELLKPLGLELPVVPVKGQ-MILYKCAADFLPRMVLAKGRY 246
Query: 288 PAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQ----EVPDDPETVSGDPASIQVLKRVART 343
PR G + L G + E + P D S ++ ++L +A
Sbjct: 247 -------------AIPRRDGHI-LIGSTLEHSGFDKTPTDEAQESLRASAAELLPELA-- 290
Query: 344 VSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALA 403
+ Q A A P + +G+P IG +PG G ++ TGH G++ PA+ LA
Sbjct: 291 -------DMQPVAHWAGLRPGSPEGIPYIGPVPGFDGLWLNTGHYRNGLVLAPASCRLLA 343
Query: 404 ELVMDGCASIVDLSRFSPA 422
+L M G I+D + ++PA
Sbjct: 344 DL-MSGREPIIDPAPYAPA 361
>sp|Q6DCP1|FXRD1_XENLA FAD-dependent oxidoreductase domain-containing protein 1 OS=Xenopus
laevis GN=foxred1 PE=2 SV=1
Length = 499
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 34/209 (16%)
Query: 234 VESDAVVLALGPWSGKFELLASMFR--VSGLKAHSIILEPKEADAITPHA---------L 282
VE V+ A G WS K LA + + L+ + +EPK+ H L
Sbjct: 295 VECSLVINAAGAWSSKVAELAGIGTGPSNSLEGIKLPVEPKKRYVYVVHCPNGPGLDCPL 354
Query: 283 FL----SYYPAQGEGGKPMDPEVYPRPTGEVYLCGMS-SEQEVPDDPET-VSGDPASIQV 336
+ +Y+ +G GG Y+ G S +E+E PD V D +V
Sbjct: 355 LIDNSGAYFRREGLGGN--------------YIAGKSPAEEEEPDISNMEVDHDFFQEKV 400
Query: 337 LKRVARTVSSHLGEEAQVKAEQACFLPC-TDDGVPVIGELPGIKGCYVGTGHNCWGILNG 395
+A V + E +VK A + T D V+G P + + TG + G+ +
Sbjct: 401 WPLLAHRVPAF--ESLKVKTSWAGYYDYNTYDQNGVVGMHPLVNNLFFATGFSGHGLQHS 458
Query: 396 PATGAALAELVMDGCASIVDLSRFSPARF 424
PA G A+AEL++DG ++LS FS RF
Sbjct: 459 PAVGRAVAELIVDGGFKTLNLSSFSFRRF 487
>sp|Q3TQB2|FXRD1_MOUSE FAD-dependent oxidoreductase domain-containing protein 1 OS=Mus
musculus GN=Foxred1 PE=2 SV=1
Length = 487
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 24/231 (10%)
Query: 204 GLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFR--VSG 261
G VV+ ++ V V +E + VE V+ A G WSGK LA + +
Sbjct: 259 GEHVVLRRINNVHVKMDKSLEY------QPVECAVVINAAGAWSGKIAELAGVGKGLPGT 312
Query: 262 LKAHSIILEPKEADAITPHALFLSYYPAQGEGGK-PMDPE---VYPRPTG--EVYLCGMS 315
L+ + +EP++ H QG G + P+ + VY R G YL G S
Sbjct: 313 LQGTKLPVEPRKRYVHLWHC-------PQGPGLETPLVADISGVYFRREGLGSNYLGGCS 365
Query: 316 SEQEVPDDPETVSGDPASIQ--VLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIG 373
+E DP ++ D Q V + + V S E Q A + T D V+G
Sbjct: 366 PTEEEEPDPTNLNVDHDFFQNKVWPHLVQRVPSFKTLEVQ-SAWAGYYDYNTFDQNGVVG 424
Query: 374 ELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARF 424
P + Y TG + G+ + P G A+AE++++G +D+S F RF
Sbjct: 425 PHPLVVNMYFATGFSGRGLQHAPGIGRAVAEIMLEGHFKTIDMSPFLFTRF 475
>sp|C6DGU9|DADA_PECCP D-amino acid dehydrogenase small subunit OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=dadA PE=3
SV=1
Length = 417
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 37/246 (15%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248
QLFT+ L A D G+ +G+ R EG V V + +V +DA V+A G +S
Sbjct: 201 QLFTRQLAAMAA-DAGVTFKLGRHVRQLRVEGQNVTGVQCDDEMIV-ADAYVMACGSYST 258
Query: 249 KFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYPR 304
LL F V LK +S+ + P DA P + L +Y A + + R
Sbjct: 259 G--LLRQWFDIPVYPLKGYSLTI-PLADDASAPVSTVLDETYKVAITRFDRRI------R 309
Query: 305 PTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFL-- 362
G + G +++ +P + L+ V R + H G EQA F
Sbjct: 310 VGGMAEVVGFNTDL-----------NPKRRETLEMVVRDLYPHCG-----PIEQATFWTG 353
Query: 363 --PCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFS 420
P T DG P++G P +K Y+ TGH G +G LA+++ D I + + S
Sbjct: 354 LRPMTPDGTPLVGRSP-LKNLYLNTGHGTLGWTMACGSGKLLADILSDKSPEI-EANDLS 411
Query: 421 PARFGR 426
R+ R
Sbjct: 412 VERYVR 417
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85
V + G G++GV TA++LA++G VT+I++
Sbjct: 2 RVVILGSGVVGVSTAWYLAQEGHDVTVIDRQ 32
>sp|Q6F7Y9|MNMC_ACIAD tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Acinetobacter sp. (strain ADP1) GN=mnmC
PE=3 SV=1
Length = 623
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 151/385 (39%), Gaps = 39/385 (10%)
Query: 48 GQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGG 107
Q +++H AV G GI G+ A+ LA++G VTL+++S ASG L C
Sbjct: 257 NQPSTQQHFAVIGAGIAGLHCAWSLAQRGHRVTLVDQSQPLSGASGNPLALLNPKLC--- 313
Query: 108 PLSSLARASFNLHRSLAEEL-NGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSW 166
P++ L A + + + L+L ++S + ++ K S
Sbjct: 314 PITQCHDHLMVLCWQYARRFYQNFEAFRLIQVNQLALKASDSLLNLAEQYPKDVLDAHSA 373
Query: 167 VDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESV 226
P + + + PQLF +L + +E K+ ++ + G V+ +
Sbjct: 374 QQSPLETQYDYLTLHYAGVISPQLFCNQVLQHPL----IEFKQFKINQI-IEIDGTVQLL 428
Query: 227 MIEGGRVVESDAVVLALGPWSGK-FELLASMF----RVSGLKAHSIILEPKEADAITPHA 281
E ++ES+A ++ SGK FE ++ +VS + H+ P +A + +
Sbjct: 429 SSEQA-ILESNAAIVCCARESGKLFEQYPTLKPIRGQVSWFEQHTFPFAPDQAFSYGGYC 487
Query: 282 LFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVA 341
+ L +P Q G P+ R EV L E V + S PA Q L V
Sbjct: 488 MQL--HPQQLILGASFHPQ---RDDDEVLL-----EDHVHNFNLIHSVFPAYAQTLPPVE 537
Query: 342 RTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAA 401
A V+A+ + D P++G+L + G G L P
Sbjct: 538 E-----WHGRASVRAQ-------SPDYFPLVGQLQDHSKLFTLAGLGSKGYLFAPLNSEI 585
Query: 402 L-AELVMDGC-ASIVDLSRFSPARF 424
L A ++ + C S L + +P RF
Sbjct: 586 LVAHILGEACPVSANLLQKLNPQRF 610
>sp|Q6D4N9|DADA_ERWCT D-amino acid dehydrogenase small subunit OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=dadA PE=3 SV=1
Length = 417
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 101/248 (40%), Gaps = 41/248 (16%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248
QLFT+ L A + G+ +G+ R EG V V + +V +DA V+A G +S
Sbjct: 201 QLFTRQLAAMAA-EAGVTFKLGRNVRQLRVEGQSVTGVQCDDEMIV-ADAYVMACGSYST 258
Query: 249 KFELLASMFR--VSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYP--- 303
LL F V LK +S+ + P DA P + L E Y
Sbjct: 259 G--LLRQWFDIPVYPLKGYSLTI-PLADDASAPVSTVLD--------------ETYKVAI 301
Query: 304 -RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFL 362
R + + GM+ D +P + L+ V R + H G EQA F
Sbjct: 302 TRFDNRIRVGGMAEVVGFNTDL-----NPKRRETLEMVVRDLYPHCG-----PIEQATFW 351
Query: 363 ----PCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSR 418
P T DG P++G P +K Y+ TGH G +G LA+++ D I +
Sbjct: 352 TGLRPMTPDGTPLVGRSP-LKNLYLNTGHGTLGWTMACGSGKLLADILSDKSPEI-EADD 409
Query: 419 FSPARFGR 426
S +R+ R
Sbjct: 410 LSVSRYTR 417
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85
V + G G++GV TA++LA+ G VT+I++
Sbjct: 2 RVVILGSGVVGVSTAWYLAQAGHDVTVIDRQ 32
>sp|Q5EA45|FXRD1_BOVIN FAD-dependent oxidoreductase domain-containing protein 1 OS=Bos
taurus GN=FOXRED1 PE=2 SV=1
Length = 486
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 234 VESDAVVLALGPWSGKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFLSYYPAQG 291
VE VV A G WSG+ LA + ++ + +EP++ ++L + P QG
Sbjct: 282 VECAIVVNAAGAWSGQIAELAGVGNGPPGTMQGTKLPVEPRK------RYVYLWHCP-QG 334
Query: 292 EGGK-PM--DPE-VYPRPTG--EVYLCGMSSEQEVPDDPETVSGDPASIQ--VLKRVART 343
G + P+ DP Y R G Y+ S +E DP + D Q V R+A+
Sbjct: 335 PGLEAPLVADPSGAYFRREGLGNNYVGSCSPTEEEEPDPGNLEVDYDFFQEKVWPRLAQR 394
Query: 344 VSSHLGEEAQVKAEQACFLPC-TDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAAL 402
V + E +V++ A + T D V+G P + Y TG + G+ PA G A+
Sbjct: 395 VPAF--ETLKVRSAWAGYYDYNTFDQNGVVGPHPLVVNMYFATGFSGHGLQQAPAVGRAV 452
Query: 403 AELVMDGCASIVDLSRFSPARF 424
AE+V++G ++LS F +RF
Sbjct: 453 AEMVLEGHFQTINLSPFLFSRF 474
>sp|C5B9W5|DADA_EDWI9 D-amino acid dehydrogenase small subunit OS=Edwardsiella ictaluri
(strain 93-146) GN=dadA PE=3 SV=1
Length = 417
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 100/440 (22%), Positives = 156/440 (35%), Gaps = 96/440 (21%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGG-P 108
V + G G+IGV +A++LA+ G VT++++ + A +G+ A W G P
Sbjct: 2 RVVILGSGVIGVTSAWYLAQAGHQVTVVDRQEGPGLETSAANAGQISPGYAAPWAAPGIP 61
Query: 109 LSSLARASFNLHRSLAEELNGP-----------------------------DNYGYRALT 139
L +L + F H LA L+G Y L
Sbjct: 62 LKAL-KWLFQRHAPLAMSLDGSLFQLRWLWQMLRNCDSTHYAQNKARMVRLAEYSRDCLA 120
Query: 140 TLSLTVT---ESQQSGS-----KPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQL- 190
L T T E +Q G+ P N+ V A P + T + V P L
Sbjct: 121 QLRRTTTIDYEGRQLGTLQLFRTPQQYENAARDIAVLREAGVPYRLLPTAQLSTVEPALA 180
Query: 191 ----------------------FTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMI 228
FT+ L +A G+ + + G R++ V
Sbjct: 181 VAGVRLSGGLHLPHDETGDCQLFTRHLAQQAAQS-GVHFIFSTQVLRLLRSGARIQGVQC 239
Query: 229 EGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYP 288
G + +DA V+ALG +S V LK +S+ L + DA P + L
Sbjct: 240 -GHDTLVADAYVVALGAYSTGLLQDIVAIPVYPLKGYSLTLPIDDPDA-APRSTVLD--- 294
Query: 289 AQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDP----ASIQVLKRVARTV 344
E Y +V + V E V D A + L+RV R +
Sbjct: 295 -----------ESY-----KVAITRFDRRIRVGGMAEVVGFDMSLPLARRRTLERVVRDL 338
Query: 345 SSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAE 404
G Q + + P T DG P++G P ++ Y+ TGH G +G LA+
Sbjct: 339 YPRGGLLPQA-SFWSGLRPATPDGTPLVGATP-LENLYLNTGHGTLGWTMACGSGQLLAD 396
Query: 405 LVMDGCASIVDLSRFSPARF 424
++ G + + S +R+
Sbjct: 397 II-SGVTPTIRVDDLSVSRY 415
>sp|Q4R510|FXRD1_MACFA FAD-dependent oxidoreductase domain-containing protein 1 OS=Macaca
fascicularis GN=FOXRED1 PE=2 SV=1
Length = 486
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 307 GEVYLCGMSSEQEVPDDPETVSGDPASIQ--VLKRVARTVSSHLGEEAQVKAEQACFLPC 364
G YL G S +E DP + D Q V +A V + E +V+ A +
Sbjct: 356 GSNYLGGRSPAEEEEPDPANLEVDHDFFQEKVWPHLALRVPAF--ETLKVQTAWAGYYDY 413
Query: 365 -TDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPAR 423
T D V+G P + Y TG + G+ P G A+AE++++G +DLS F R
Sbjct: 414 NTFDQNGVVGPHPLVVNMYFATGFSGHGLQQAPGVGRAVAEMILEGSFQTIDLSPFLFNR 473
Query: 424 F 424
F
Sbjct: 474 F 474
>sp|B1JLH4|DADA_YERPY D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=dadA
PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|Q66AQ6|DADA_YERPS D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=dadA
PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|Q1CJ86|DADA_YERPN D-amino acid dehydrogenase small subunit OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=dadA PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|A9R9D3|DADA_YERPG D-amino acid dehydrogenase small subunit OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=dadA PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|Q8ZEL7|DADA_YERPE D-amino acid dehydrogenase small subunit OS=Yersinia pestis GN=dadA
PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|B2K3Q3|DADA_YERPB D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=dadA
PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|Q1C7V0|DADA_YERPA D-amino acid dehydrogenase small subunit OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=dadA PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|A7FI92|DADA_YERP3 D-amino acid dehydrogenase small subunit OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=dadA PE=3 SV=1
Length = 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K Y+ TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|Q63342|M2GD_RAT Dimethylglycine dehydrogenase, mitochondrial OS=Rattus norvegicus
GN=Dmgdh PE=1 SV=1
Length = 857
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 15 LPGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAK 74
L LRL + R + Q SPP + + + GGG +GV AY LAK
Sbjct: 4 LGALRLRGLALRSSQGRPSSAGLREGQESPPSPPEWKDRAETVIIGGGCVGVSLAYHLAK 63
Query: 75 KGAA-VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEE 126
G V L+EKS + ++ A G L + G L + S L+ L EE
Sbjct: 64 AGMRDVVLLEKSELTAGSTWHAAG-LTTYFHPGINLKKIHYDSIKLYERLEEE 115
>sp|Q96CU9|FXRD1_HUMAN FAD-dependent oxidoreductase domain-containing protein 1 OS=Homo
sapiens GN=FOXRED1 PE=1 SV=2
Length = 486
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 307 GEVYLCGMS-SEQEVPDDPE-TVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPC 364
G YL G S +EQE PD V D +V +A V + E +V++ A +
Sbjct: 356 GSNYLGGRSPTEQEEPDPANLEVDHDFFQDKVWPHLALRVPAF--ETLKVQSAWAGYYDY 413
Query: 365 -TDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPAR 423
T D V+G P + Y TG + G+ P G A+AE+V+ G +DLS F R
Sbjct: 414 NTFDQNGVVGPHPLVVNMYFATGFSGHGLQQAPGIGRAVAEMVLKGRFQTIDLSPFLFTR 473
Query: 424 F 424
F
Sbjct: 474 F 474
>sp|Q55710|THIOG_SYNY3 Bifunctional protein ThiO/ThiG OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=thiO/thiG PE=3 SV=1
Length = 656
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 196 LNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLAS 255
L +A G+++ G + G+V +V+ + G ++D+ VLA G W+ + L
Sbjct: 152 LRQAAQSLGVQIQEGVTVQAIAQRHGQVTAVLTDQGSF-QADSYVLANGSWAKEL-LPLP 209
Query: 256 MFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVY--PRPTGEVYLCG 313
+F V G + A+ A YP Q P+ Y PR G + + G
Sbjct: 210 VFPVKG-----------QMMALRMPAGTHQPYPLQR---VLFGPQTYLVPRRDGRL-IVG 254
Query: 314 MSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIG 373
+SEQ V P P IQ L A + LG+ A ++ F P T D P +G
Sbjct: 255 ATSEQ-VDWQPHNT---PQGIQTLLGRAIRLFPALGDWA-IEDFWWGFRPGTPDEQPFLG 309
Query: 374 ELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARF 424
P + GH GIL P T A +++L++D S + + FSP RF
Sbjct: 310 YGP-CDNLILAIGHYRNGILLAPITAALISDLILDQKVSPL-IHAFSPQRF 358
>sp|A9IP97|DADA_BORPD D-amino acid dehydrogenase small subunit OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dadA
PE=3 SV=1
Length = 434
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 145/418 (34%), Gaps = 86/418 (20%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-SVACAASGKAGG---------------- 97
HV V G G+IG TAY+LA++GA VT++++ AC S G
Sbjct: 2 HVIVLGSGVIGTTTAYYLARQGAKVTVLDRQPEAACETSYANAGQVSPGYSTPWAAPGIP 61
Query: 98 FLALDWC--DGGPLS--------------------SLARASFNLHRSLA---------EE 126
F AL W PL+ + R + N R L E
Sbjct: 62 FKALKWLFQKDAPLAIRPDGTLYQWRWMAAMLANCTAGRYTVNKERMLRLAEYSRDCLRE 121
Query: 127 LNGPDNYGY--RALTTLSLTVTESQQSGSKPSNKANSL--IPSWVDGPARSPTTIGSTQT 182
L Y R L TL L + SQ ++ + +P + AR T +
Sbjct: 122 LRADTGIQYEARTLGTLQLFRSASQYQAAQRDIQVLDACGVPYELLDSARLQTVEPALAR 181
Query: 183 TAQVHP-------------QLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIE 229
TA +LFT+ L A G+E G+ V G + V +
Sbjct: 182 TAHKLAGGLRLPNDETGDCRLFTRRLAQLAAG-LGVEFRYGQDVEALVAGGAEIRGVRV- 239
Query: 230 GGRVVESDAVVLALGPWS-GKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYP 288
GG + +D V A G ++ G L V +K +S+ + A+A + Y
Sbjct: 240 GGETLAADRYVAAFGSYTRGFLAPLGLELPVYPVKGYSLTIPLASAEAAPVSTVLDETYK 299
Query: 289 AQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHL 348
D + R G L G + +PA + L+ V +
Sbjct: 300 V---AITRFDNRI--RVGGMAELAGFD-----------LGLNPAHRRTLEHVVTDLYPGC 343
Query: 349 GEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406
GE AQ + P T D P++G ++ TGH G +G +A+LV
Sbjct: 344 GEVAQAEFWTG-LRPMTPDSTPIVGATR-YANLFLNTGHGTLGWTMACGSGKVVADLV 399
>sp|A3M8T4|MNMC_ACIBT tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Acinetobacter baumannii (strain ATCC
17978 / NCDC KC 755) GN=mnmC PE=3 SV=2
Length = 623
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 44 PPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDW 103
P D +++H+AV G GI G+ TA+ A++G VTL E+++ ASG L
Sbjct: 255 PVSDTLHFTQQHIAVIGAGIAGLSTAWAFAQRGHQVTLFERTAPLSGASGNPLALLNPKL 314
Query: 104 C 104
C
Sbjct: 315 C 315
>sp|B1J4P3|DADA_PSEPW D-amino acid dehydrogenase small subunit OS=Pseudomonas putida
(strain W619) GN=dadA PE=3 SV=1
Length = 433
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/441 (21%), Positives = 164/441 (37%), Gaps = 94/441 (21%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGG-P 108
V V G G+IG +AY+LA++G VT++++ + A +G+ A W G P
Sbjct: 2 RVLVLGSGVIGTASAYYLARQGFEVTVVDRQPAVAMETSFANAGQISPGYASPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNGP-DNYGYRALTTLSLTVTE---SQQSGSKPSNKANSLIP 164
L ++ + H LA +L G D Y + A + T + +++ + S + +
Sbjct: 62 LKAI-KWLLERHAPLAIKLTGDVDQYLWMAQMLRNCTASRYAVNKERMVRLSEYSRDCLD 120
Query: 165 SWV--DGPARSPTTIGSTQT-------------------------------TAQVHPQL- 190
G A T+G+TQ A+V P L
Sbjct: 121 ELRAETGIAYESRTLGTTQLFRTQAQLDAAAKDIAVLEQSGVPYELLDRDGIARVEPALA 180
Query: 191 ----------------------FTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVM 227
FT L A+ G+E G+ ++R+ G R+ V
Sbjct: 181 GVKDILAGALRLPNDQTGDCQLFTTKLAEMALK-LGVEFRFGQDIQRLDFA-GDRINGVW 238
Query: 228 IEGGRVVESDAVVLALGPWSGK-FELLASMFRVSGLKAHSIILEPKEADAITPHALFLSY 286
++ G++ +D VLALG +S + + L V LK +S+ + AD +
Sbjct: 239 VD-GKLETADRYVLALGSYSPQMLKPLGIKAPVYPLKGYSLTVPITNADMAPTSTILDET 297
Query: 287 YPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSS 346
Y R + + GM+ +S +P + L+ + +
Sbjct: 298 YKV-----------AITRFDNRIRVGGMAEIAGF-----DLSLNPRRRETLEMIVNDLYP 341
Query: 347 HLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406
G+ +Q + P T DG P++G + ++ TGH G +G LA+L+
Sbjct: 342 RGGDLSQA-SFWTGLRPATPDGTPIVGA-TAFRNLFLNTGHGTLGWTMACGSGRLLADLI 399
Query: 407 MDGCASI----VDLSRFSPAR 423
I +D+SR+ R
Sbjct: 400 ARKKPQISAEGLDISRYGKTR 420
>sp|Q7WI07|DADA_BORBR D-amino acid dehydrogenase small subunit OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=dadA PE=3 SV=1
Length = 434
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-----VACAASGKAGGFLALDWCDGG-P 108
HV V G G+IG TAY+LA++GA VT++E+ + + +G+ + W G P
Sbjct: 2 HVIVLGSGVIGTTTAYYLARQGAQVTVLERRAGPADETSYGNAGQVSPGYSTPWAAPGIP 61
Query: 109 LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
L +L + F H LA +G Y +R L + + + S +K
Sbjct: 62 LKAL-KWMFQKHAPLAIRADG-SFYQWRWLAAMLANCSAGRYSVNK 105
>sp|Q7W641|DADA_BORPA D-amino acid dehydrogenase small subunit OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=dadA PE=3 SV=1
Length = 434
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-----VACAASGKAGGFLALDWCDGG-P 108
HV V G G+IG TAY+LA++GA VT++E+ + + +G+ + W G P
Sbjct: 2 HVIVLGSGVIGTTTAYYLARQGAQVTVLERRAGPADETSYGNAGQVSPGYSTPWAAPGIP 61
Query: 109 LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
L +L + F H LA +G Y +R L + + + S +K
Sbjct: 62 LKAL-KWMFQKHAPLAIRADG-SFYQWRWLAAMLANCSAGRYSVNK 105
>sp|Q1QZP3|MNMC_CHRSD tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=mnmC PE=3 SV=1
Length = 699
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 42 ASPPMDGQRHSK-----------KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACA 90
A+PP D +R S +HV V G G+ G A LA++G AVTL+E+ +
Sbjct: 247 AAPPDDRRRASTPWFTPPRARPARHVVVIGAGLAGTSVAAALARRGVAVTLLERDAPGAG 306
Query: 91 ASGKAGGFL 99
ASG G L
Sbjct: 307 ASGNRQGAL 315
>sp|A4XXB7|MNMC_PSEMY tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pseudomonas mendocina (strain ymp)
GN=mnmC PE=3 SV=1
Length = 657
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 81/396 (20%), Positives = 144/396 (36%), Gaps = 66/396 (16%)
Query: 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEK-SSVACAASGKAGGFLALDW-CDGGPLSS 111
+ V G G+ G TA LA +G VTL+E+ VA ASG G L L G LS
Sbjct: 256 RQAVVIGAGLAGCATAASLAARGWRVTLLERHDDVAREASGNPQGVLYLKLSAHGTVLSR 315
Query: 112 LARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPA 171
L A F R L E L ++ + L+ E+++ + + L+ + A
Sbjct: 316 LIVAGFGHTRRLLERLQRGSDWDACGVLQLAFDAKEAERQNKLAAAFPDDLLHALPQTEA 375
Query: 172 RSPTTIG------STQTTAQVHPQLFTKTLLNKAVND---YGLEVVIGKVERVGVGEGGR 222
+ IG VHP + L + + Y + + + + EG
Sbjct: 376 EARAGIGLPAGGLFYPDAGWVHPPALCRQLAQHPLIELRPYQEALSLSRQQERWCVEG-- 433
Query: 223 VESVMIEGGRVVESDAVVLALGPWSGKF--ELLASMFRVSGLKAHSIILEPKEADAITPH 280
+ G + E+ ++LA G+ E + R+ G + E A
Sbjct: 434 ------QNGVLAEAPVLILACAAEIGRLLPEANLPLKRIRGQISRLPANESSSA------ 481
Query: 281 ALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRV 340
+ A+G D E + G S + D +V+ ++++L+ +
Sbjct: 482 --LRTVVCAEGYVAPARDDE---------HTLGASFDFHSDDLTPSVAEHAGNLELLREI 530
Query: 341 ARTVSSHLGEEAQVKAE---QACFLPCTDDGVPVIGEL---------------------- 375
++ ++ L + A +A F + D +P++G L
Sbjct: 531 SQDLAERLDTQTLDPATLQGRAAFRCTSPDYLPLVGPLAAGQAFNQAYAVLAKDARQVPE 590
Query: 376 ---PGIKGCYVGTGHNCWGILNGPATGAALAELVMD 408
P + G Y+ +GH G++ P +G +A + D
Sbjct: 591 TPCPWLDGLYINSGHGSRGLITAPLSGELIAAWLED 626
>sp|Q9DBT9|M2GD_MOUSE Dimethylglycine dehydrogenase, mitochondrial OS=Mus musculus
GN=Dmgdh PE=1 SV=1
Length = 869
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 20 LTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAA- 78
L L GS + + + ASPP + + + GGG +GV AY LAK G
Sbjct: 12 LALRGSPRRPSSAGLREGQESPASPP---EWKDRAETVIIGGGCVGVSLAYHLAKAGMRD 68
Query: 79 VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEE 126
V L+EKS + ++ A G L + G L + S L+ L EE
Sbjct: 69 VVLMEKSELTAGSTWHAAG-LTTYFHPGINLKKIHYDSIKLYERLEEE 115
>sp|Q9UI17|M2GD_HUMAN Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens
GN=DMGDH PE=1 SV=2
Length = 866
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 41 QASPPM--DGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSSVACAASGKAGG 97
+ PP+ + Q + + GGG +GV AY LAK G V L+EKS + ++ A G
Sbjct: 35 EEKPPLSAETQWKDRAETVIIGGGCVGVSLAYHLAKAGMKDVVLLEKSELTAGSTWHAAG 94
Query: 98 FLALDWCDGGPLSSLARASFNLHRSLAEE 126
L + G L + S L+ L EE
Sbjct: 95 -LTTYFHPGINLKKIHYDSIKLYEKLEEE 122
>sp|B0RWG2|DADA_XANCB D-amino acid dehydrogenase small subunit OS=Xanthomonas campestris
pv. campestris (strain B100) GN=dadA PE=3 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 103/246 (41%), Gaps = 29/246 (11%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L + A G++ G+ +ER+ GG + V I+G R+V +D VLALG +S
Sbjct: 201 RLFTQRLADLATQA-GVQFRYGQQIERLEHA-GGEITGVQIDG-RLVTADRYVLALGSYS 257
Query: 248 GKFELLASMFR-VSGLKAHSIILEPKEAD-AITPHALFLSYYPAQGEGGKPMDPEVYPRP 305
L + V LK +S+ + +A A T L SY A D + R
Sbjct: 258 ADLLLSLGLHLPVYPLKGYSLTIPIVDAQRAPTSTVLDESYKIALTR----FDERI--RV 311
Query: 306 TGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCT 365
G + G +S +P L+ V + G+ AQ + P T
Sbjct: 312 GGMAEVAGFD-----------LSLNPRRRATLEMVVNDLFPGAGDLAQAEFWTG-LRPAT 359
Query: 366 DDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASI----VDLSRFSP 421
DG PV+G P ++ TGH G +G LA+L+ I +D+ R+
Sbjct: 360 PDGTPVVGATP-YANLFLNTGHGTLGWTMACGSGRYLADLMQGRTPEIDTEGLDVFRYLS 418
Query: 422 ARFGRP 427
R RP
Sbjct: 419 TRSTRP 424
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85
V + G G+IG TA++LA+ G VT++++
Sbjct: 2 RVLILGSGVIGTTTAWYLAQSGCEVTVVDRQ 32
>sp|Q8P4Q9|DADA_XANCP D-amino acid dehydrogenase small subunit OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dadA PE=3 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 103/246 (41%), Gaps = 29/246 (11%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L + A G++ G+ +ER+ GG + V I+G R+V +D VLALG +S
Sbjct: 201 RLFTQRLADLATQA-GVQFRYGQQIERLEHA-GGEITGVQIDG-RLVTADRYVLALGSYS 257
Query: 248 GKFELLASMFR-VSGLKAHSIILEPKEAD-AITPHALFLSYYPAQGEGGKPMDPEVYPRP 305
L + V LK +S+ + +A A T L SY A D + R
Sbjct: 258 ADLLLSLGLHLPVYPLKGYSLTIPIVDAQRAPTSTVLDESYKIALTR----FDERI--RV 311
Query: 306 TGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCT 365
G + G +S +P L+ V + G+ AQ + P T
Sbjct: 312 GGMAEVAGFD-----------LSLNPRRRATLEMVVNDLFPGAGDLAQAEFWTG-LRPAT 359
Query: 366 DDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASI----VDLSRFSP 421
DG PV+G P ++ TGH G +G LA+L+ I +D+ R+
Sbjct: 360 PDGTPVVGATP-YANLFLNTGHGTLGWTMACGSGRYLADLMQGRTPEIDTEGLDVFRYLS 418
Query: 422 ARFGRP 427
R RP
Sbjct: 419 TRSTRP 424
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85
V + G G+IG TA++LA+ G VT++++
Sbjct: 2 RVLILGSGVIGTTTAWYLAQSGCEVTVVDRQ 32
>sp|Q4UQB4|DADA_XANC8 D-amino acid dehydrogenase small subunit OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=dadA PE=3 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 103/246 (41%), Gaps = 29/246 (11%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L + A G++ G+ +ER+ GG + V I+G R+V +D VLALG +S
Sbjct: 201 RLFTQRLADLATQA-GVQFRYGQQIERLEHA-GGEITGVQIDG-RLVTADRYVLALGSYS 257
Query: 248 GKFELLASMFR-VSGLKAHSIILEPKEAD-AITPHALFLSYYPAQGEGGKPMDPEVYPRP 305
L + V LK +S+ + +A A T L SY A D + R
Sbjct: 258 ADLLLSLGLHLPVYPLKGYSLTIPIVDAQRAPTSTVLDESYKIALTR----FDERI--RV 311
Query: 306 TGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCT 365
G + G +S +P L+ V + G+ AQ + P T
Sbjct: 312 GGMAEVAGFD-----------LSLNPRRRATLEMVVNDLFPGAGDLAQAEFWTG-LRPAT 359
Query: 366 DDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASI----VDLSRFSP 421
DG PV+G P ++ TGH G +G LA+L+ I +D+ R+
Sbjct: 360 PDGTPVVGATP-YANLFLNTGHGTLGWTMACGSGRYLADLMQGRTPEIDTEGLDVFRYLS 418
Query: 422 ARFGRP 427
R RP
Sbjct: 419 TRSTRP 424
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85
V + G G+IG TA++LA+ G VT++++
Sbjct: 2 RVLILGSGVIGTTTAWYLAQSGCEVTVVDRQ 32
>sp|A9BU40|DADA_DELAS D-amino acid dehydrogenase small subunit OS=Delftia acidovorans
(strain DSM 14801 / SPH-1) GN=dadA PE=3 SV=1
Length = 432
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 56 VAVCGGGIIGVCTAYFLAKKGAAVTLIEK-----SSVACAASGKAGGFLALDWCDGG-PL 109
V V GGG+IGV +AY+LA+ GA VT++++ S + A +G+ + W G PL
Sbjct: 3 VLVLGGGVIGVTSAYYLARAGAEVTVLDRQDAPASETSFANAGQVSPGYSTPWAAPGIPL 62
Query: 110 SSLARASFNLHRSLAEELNG 129
+L + H LA L+G
Sbjct: 63 KAL-KWMLQEHAPLAVRLDG 81
>sp|A4TJC4|DADA_YERPP D-amino acid dehydrogenase small subunit OS=Yersinia pestis (strain
Pestoides F) GN=dadA PE=3 SV=1
Length = 434
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247
+LFT+ L K G++ + + V+++ V EG ++ V+ G ++++DA V+A G +S
Sbjct: 201 KLFTERL-AKMAEQAGVKFIFNRSVDKLLV-EGDQIAGVLC-GDDIIKADAYVVAFGAYS 257
Query: 248 GKFELLASMFR--VSGLKAHSIILEPKEADAITPHALFL--SYYPAQGEGGKPMDPEVYP 303
LLA + V LK +S+ + P A P + L +Y A D +
Sbjct: 258 TA--LLAGLVSIPVYPLKGYSLTI-PITDPASAPFSTVLDETYKIAITR----FDDRI-- 308
Query: 304 RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLP 363
R G + G +++ PA + L+ V R + H G+ +Q + P
Sbjct: 309 RVGGMAEIVGFNTQLA-----------PARRETLEMVVRDLYPHGGDISQA-VFWSGLRP 356
Query: 364 CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIV--DLS 417
T DG P++G P +K + TGH G +G LA+++ +IV DLS
Sbjct: 357 MTPDGTPIVGRTP-LKNLNLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLS 411
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAG----GFLALDWCDGGP 108
V + G G++GV +A++LAK+G VT+I++ ++G AG G+ A G P
Sbjct: 2 RVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGVP 61
Query: 109 LSSLARASFNLHRSLAEELNG 129
L ++ + F H LA L+G
Sbjct: 62 LKAI-KWMFQRHAPLAIRLDG 81
>sp|Q3K8R9|MNMC_PSEPF tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pseudomonas fluorescens (strain Pf0-1)
GN=mnmC PE=3 SV=1
Length = 659
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEK-SSVACAASGKAGGFLALDW-CDGGPLSS 111
+ V G G+ G TA LA +G V+L+E+ +VA ASG G L L G LS
Sbjct: 262 RRALVIGAGLAGCATAASLAARGWQVSLLERHDAVAQEASGNPQGVLYLKLSAHGTALSQ 321
Query: 112 LARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGP 170
L + F R + E L ++ + L+ E ++ S L+ W+D P
Sbjct: 322 LIVSGFGYTRRVLETLQRGTDWDDCGVLQLAFNEKERERQAQLASAFPEDLL-QWLDQP 379
>sp|O31616|GLOX_BACSU Glycine oxidase OS=Bacillus subtilis (strain 168) GN=thiO PE=1 SV=1
Length = 369
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 146/389 (37%), Gaps = 75/389 (19%)
Query: 53 KKHVAV--CGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFL-ALDWC-DGGP 108
K+H GGGIIG AY+LAK+ L E ++ + A G L A C +
Sbjct: 2 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDA 61
Query: 109 LSSLARASFNLHRSLAEELNGPDNYGYRALT--TLSLTVTESQQSGSKPSNKANSLIPSW 166
A S L++ L EEL R L +E + + +S+ SW
Sbjct: 62 FFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSV--SW 119
Query: 167 VDG-------PARSPTTIGST--QTTAQVHPQLFTKTLLNKAVNDYGLEVV----IGKVE 213
P S G++ Q V P K + KA G E+ + VE
Sbjct: 120 YSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYV-KAAKMLGAEIFEHTPVLHVE 178
Query: 214 RVGVGEGGRVESVMIEG-GRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPK 272
R G E++ I+ V ++ VV+A G WSG F F+ GL
Sbjct: 179 RDG-------EALFIKTPSGDVWANHVVVASGVWSGMF------FKQLGLNN-------- 217
Query: 273 EADAITPHALFLSYYPAQGE------GGKPMDPEVY-------PRPTGEVYLCGMSSEQE 319
++ P +GE P+ +Y PR +G + + +
Sbjct: 218 ------------AFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGD 265
Query: 320 VPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIK 379
+ P D ++ + + A+T+ + + +V A P T DG P IG P
Sbjct: 266 WSETP-----DLGGLESVMKKAKTMLPAI-QNMKVDRFWAGLRPGTKDGKPYIGRHPEDS 319
Query: 380 GCYVGTGHNCWGILNGPATGAALAELVMD 408
GH GIL PATGA +++L+M+
Sbjct: 320 RILFAAGHFRNGILLAPATGALISDLIMN 348
>sp|Q8FVC0|DADA_BRUSU D-amino acid dehydrogenase small subunit OS=Brucella suis biovar 1
(strain 1330) GN=dadA PE=3 SV=1
Length = 416
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGGPL 109
+ + G G+IGV TAY+LAK G VT+I++ + A +G+ A W G
Sbjct: 2 QITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPAPETSFANAGQVSPGYASPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
A+ F H L L D YR L + T+S+ +K
Sbjct: 62 LKAAKWLFQKHAPLILRLT-TDPVQYRWLLQMLANCTDSRYKINK 105
>sp|A5VVJ0|DADA_BRUO2 D-amino acid dehydrogenase small subunit OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=dadA PE=3 SV=1
Length = 416
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGGPL 109
+ + G G+IGV TAY+LAK G VT+I++ + A +G+ A W G
Sbjct: 2 QITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
A+ F H L L D YR L + T+S+ +K
Sbjct: 62 LKAAKWLFQKHAPLILRLT-TDPVQYRWLLQMLANCTDSRYKINK 105
>sp|Q8YD04|DADA_BRUME D-amino acid dehydrogenase small subunit OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=dadA
PE=3 SV=1
Length = 416
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGGPL 109
+ + G G+IGV TAY+LAK G VT+I++ + A +G+ A W G
Sbjct: 2 QITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
A+ F H L L D YR L + T+S+ +K
Sbjct: 62 LKAAKWLFQKHAPLILRLT-TDPVQYRWLLQMLANCTDSRYKINK 105
>sp|C0RM68|DADA_BRUMB D-amino acid dehydrogenase small subunit OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=dadA PE=3 SV=1
Length = 416
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGGPL 109
+ + G G+IGV TAY+LAK G VT+I++ + A +G+ A W G
Sbjct: 2 QITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
A+ F H L L D YR L + T+S+ +K
Sbjct: 62 LKAAKWLFQKHAPLILRLT-TDPVQYRWLLQMLANCTDSRYKINK 105
>sp|Q579E2|DADA_BRUAB D-amino acid dehydrogenase small subunit OS=Brucella abortus biovar
1 (strain 9-941) GN=dadA PE=3 SV=1
Length = 416
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGGPL 109
+ + G G+IGV TAY+LAK G VT+I++ + A +G+ A W G
Sbjct: 2 QITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
A+ F H L L D YR L + T+S+ +K
Sbjct: 62 LKAAKWLFQKHAPLILRLT-TDPVQYRWLLQMLANCTDSRYKINK 105
>sp|Q2YIL0|DADA_BRUA2 D-amino acid dehydrogenase small subunit OS=Brucella abortus
(strain 2308) GN=dadA PE=3 SV=1
Length = 416
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGGPL 109
+ + G G+IGV TAY+LAK G VT+I++ + A +G+ A W G
Sbjct: 2 QITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
A+ F H L L D YR L + T+S+ +K
Sbjct: 62 LKAAKWLFQKHAPLILRLT-TDPVQYRWLLQMLANCTDSRYKINK 105
>sp|B2SDA2|DADA_BRUA1 D-amino acid dehydrogenase small subunit OS=Brucella abortus
(strain S19) GN=dadA PE=3 SV=1
Length = 416
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS-----SVACAASGKAGGFLALDWCDGGPL 109
+ + G G+IGV TAY+LAK G VT+I++ + A +G+ A W G
Sbjct: 2 QITILGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSK 154
A+ F H L L D YR L + T+S+ +K
Sbjct: 62 LKAAKWLFQKHAPLILRLT-TDPVQYRWLLQMLANCTDSRYKINK 105
>sp|B1M860|DADA_METRJ D-amino acid dehydrogenase small subunit OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=dadA PE=3 SV=1
Length = 419
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85
HV + GGG++GV +AY+LA+ G VT++E+
Sbjct: 2 HVLILGGGVVGVTSAYYLARAGHQVTVLERQ 32
>sp|B2HYP8|MNMC_ACIBC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Acinetobacter baumannii (strain ACICU)
GN=mnmC PE=3 SV=1
Length = 623
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 44 PPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDW 103
P D + +++ +AV G GI G+ TA+ A++G VTL E++ ASG L
Sbjct: 255 PVRDTFQFTQQRIAVIGAGIAGLSTAWAFAQRGHQVTLFERTVPLSGASGNPLALLNPKL 314
Query: 104 C 104
C
Sbjct: 315 C 315
>sp|A3M0Z0|DADA_ACIBT D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=dadA PE=3 SV=2
Length = 421
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAGGF---LALDWCDGGPL 109
V V G G+IGV +AY+LA++GA VT++++ S + G AG + W G
Sbjct: 2 RVIVLGSGVIGVASAYYLARQGAEVTVLDRQSGPAEETSFGNAGQISPGYSTPWAAPGIP 61
Query: 110 SSLARASFNLHRSLAEELNG 129
+ F H LA L+G
Sbjct: 62 FKAVKWMFQHHAPLAINLDG 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,762,373
Number of Sequences: 539616
Number of extensions: 7391415
Number of successful extensions: 20676
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 20197
Number of HSP's gapped (non-prelim): 603
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)