Query 014198
Match_columns 429
No_of_seqs 330 out of 2910
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:48:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01373 soxB sarcosine oxida 100.0 1.7E-42 3.7E-47 332.1 31.6 354 51-428 28-403 (407)
2 KOG2852 Possible oxidoreductas 100.0 1.9E-41 4.1E-46 285.4 26.7 359 52-426 9-380 (380)
3 PRK00711 D-amino acid dehydrog 100.0 2.1E-41 4.5E-46 326.0 28.8 346 55-424 2-416 (416)
4 TIGR01377 soxA_mon sarcosine o 100.0 1.3E-39 2.9E-44 309.9 30.4 356 54-428 1-378 (380)
5 PRK11259 solA N-methyltryptoph 100.0 1.5E-39 3.3E-44 309.0 30.0 354 53-425 3-375 (376)
6 PRK01747 mnmC bifunctional tRN 100.0 3.2E-39 6.9E-44 325.5 23.7 346 53-427 260-653 (662)
7 PF01266 DAO: FAD dependent ox 100.0 3.8E-39 8.2E-44 304.7 14.5 335 55-405 1-358 (358)
8 PRK12409 D-amino acid dehydrog 100.0 6.6E-37 1.4E-41 293.7 26.8 335 54-410 2-407 (410)
9 TIGR03329 Phn_aa_oxid putative 100.0 1E-36 2.3E-41 295.1 28.0 339 51-409 22-394 (460)
10 COG0665 DadA Glycine/D-amino a 100.0 2.6E-36 5.7E-41 288.2 27.1 354 51-427 2-384 (387)
11 KOG2853 Possible oxidoreductas 100.0 8.9E-35 1.9E-39 250.7 25.9 362 51-429 84-502 (509)
12 TIGR03197 MnmC_Cterm tRNA U-34 100.0 1.1E-35 2.3E-40 282.2 20.7 330 68-425 1-380 (381)
13 KOG2844 Dimethylglycine dehydr 100.0 3.9E-35 8.5E-40 273.1 22.1 358 51-426 37-417 (856)
14 KOG2820 FAD-dependent oxidored 100.0 9.1E-35 2E-39 250.9 22.3 355 51-428 5-398 (399)
15 TIGR02352 thiamin_ThiO glycine 100.0 1.5E-34 3.3E-39 270.8 22.7 318 70-409 1-336 (337)
16 TIGR03364 HpnW_proposed FAD de 100.0 2.7E-34 5.8E-39 271.6 23.1 325 54-400 1-364 (365)
17 PRK11101 glpA sn-glycerol-3-ph 100.0 6.4E-32 1.4E-36 265.5 27.0 331 52-408 5-369 (546)
18 PRK11728 hydroxyglutarate oxid 100.0 4.4E-32 9.5E-37 258.5 24.3 339 53-406 2-393 (393)
19 PRK12266 glpD glycerol-3-phosp 100.0 1E-27 2.3E-32 233.9 30.8 339 51-408 4-377 (508)
20 PRK13369 glycerol-3-phosphate 100.0 4.5E-28 9.9E-33 236.8 28.2 334 51-408 4-376 (502)
21 PLN02464 glycerol-3-phosphate 100.0 1.6E-27 3.5E-32 236.7 23.5 340 51-408 69-453 (627)
22 COG0579 Predicted dehydrogenas 100.0 3.5E-26 7.5E-31 211.7 24.8 342 52-406 2-372 (429)
23 COG0578 GlpA Glycerol-3-phosph 99.9 5.6E-25 1.2E-29 207.5 30.0 335 51-408 10-385 (532)
24 TIGR03377 glycerol3P_GlpA glyc 99.9 1.8E-24 3.8E-29 212.7 22.7 312 69-408 1-346 (516)
25 KOG3923 D-aspartate oxidase [A 99.9 4.2E-23 9E-28 175.9 21.6 315 53-407 3-334 (342)
26 TIGR01320 mal_quin_oxido malat 99.9 4.6E-21 9.9E-26 185.2 24.6 342 54-407 1-443 (483)
27 PRK05257 malate:quinone oxidor 99.9 3E-21 6.6E-26 186.5 22.3 343 51-407 3-448 (494)
28 PRK13339 malate:quinone oxidor 99.9 3.5E-21 7.7E-26 184.4 21.8 346 51-407 4-450 (497)
29 PTZ00383 malate:quinone oxidor 99.9 1E-20 2.3E-25 182.0 21.8 217 51-270 43-299 (497)
30 KOG0042 Glycerol-3-phosphate d 99.9 3.2E-21 7E-26 176.8 15.8 335 51-408 65-447 (680)
31 KOG2665 Predicted FAD-dependen 99.8 7.4E-20 1.6E-24 157.2 17.6 345 51-406 46-451 (453)
32 TIGR02032 GG-red-SF geranylger 99.8 2.8E-16 6.1E-21 144.3 24.9 283 54-406 1-295 (295)
33 PRK06185 hypothetical protein; 99.8 2.8E-16 6.1E-21 151.0 23.5 298 51-406 4-318 (407)
34 PLN02697 lycopene epsilon cycl 99.7 7E-16 1.5E-20 149.5 25.7 290 51-409 106-413 (529)
35 PRK08773 2-octaprenyl-3-methyl 99.7 2E-16 4.2E-21 151.2 20.8 300 51-407 4-317 (392)
36 PRK10157 putative oxidoreducta 99.7 3.2E-15 6.8E-20 143.6 26.7 174 52-261 4-178 (428)
37 COG0644 FixC Dehydrogenases (f 99.7 3.8E-15 8.3E-20 141.8 26.4 288 52-409 2-306 (396)
38 PLN02463 lycopene beta cyclase 99.7 2.8E-15 6.1E-20 143.2 23.5 146 51-249 26-171 (447)
39 TIGR01790 carotene-cycl lycope 99.7 7.6E-15 1.6E-19 140.1 25.8 206 182-406 78-296 (388)
40 PRK05714 2-octaprenyl-3-methyl 99.7 4.2E-15 9.1E-20 142.6 23.3 176 53-259 2-180 (405)
41 TIGR01988 Ubi-OHases Ubiquinon 99.7 1.8E-15 3.9E-20 144.4 20.4 298 55-407 1-311 (385)
42 PRK07364 2-octaprenyl-6-methox 99.7 5.7E-15 1.2E-19 142.3 23.7 297 51-407 16-329 (415)
43 PRK07608 ubiquinone biosynthes 99.7 1.2E-14 2.6E-19 138.8 25.4 301 51-407 3-315 (388)
44 PRK07333 2-octaprenyl-6-methox 99.7 4.4E-15 9.6E-20 142.6 22.3 205 182-406 104-314 (403)
45 PRK08244 hypothetical protein; 99.7 1.5E-14 3.2E-19 142.1 26.4 300 53-423 2-326 (493)
46 COG0654 UbiH 2-polyprenyl-6-me 99.7 1.2E-14 2.6E-19 138.2 24.2 163 53-254 2-169 (387)
47 PRK10015 oxidoreductase; Provi 99.7 3.5E-14 7.7E-19 136.2 27.3 166 52-255 4-172 (429)
48 PRK07494 2-octaprenyl-6-methox 99.7 3.5E-15 7.6E-20 142.4 19.9 299 52-407 6-315 (388)
49 TIGR01984 UbiH 2-polyprenyl-6- 99.7 8E-15 1.7E-19 139.8 21.5 204 183-407 99-311 (382)
50 PRK08013 oxidoreductase; Provi 99.7 1E-14 2.2E-19 139.4 21.7 172 53-258 3-179 (400)
51 PRK09126 hypothetical protein; 99.7 5.9E-15 1.3E-19 141.1 19.2 167 53-254 3-174 (392)
52 PRK06847 hypothetical protein; 99.7 1.8E-14 3.8E-19 137.0 22.2 297 52-408 3-318 (375)
53 PRK08849 2-octaprenyl-3-methyl 99.7 5.3E-15 1.1E-19 140.7 18.4 297 53-407 3-314 (384)
54 TIGR02023 BchP-ChlP geranylger 99.6 1E-13 2.2E-18 132.1 25.9 69 184-255 87-163 (388)
55 PRK05732 2-octaprenyl-6-methox 99.6 2.8E-14 6.2E-19 136.6 22.2 203 184-406 107-316 (395)
56 PRK06834 hypothetical protein; 99.6 4.3E-14 9.4E-19 137.6 22.3 160 53-260 3-169 (488)
57 PRK08020 ubiF 2-octaprenyl-3-m 99.6 2.7E-14 5.9E-19 136.5 20.4 295 51-407 3-316 (391)
58 PRK08163 salicylate hydroxylas 99.6 8.5E-14 1.8E-18 133.3 23.3 204 184-407 104-321 (396)
59 PRK08850 2-octaprenyl-6-methox 99.6 5.1E-14 1.1E-18 135.0 20.9 169 53-256 4-177 (405)
60 PRK07045 putative monooxygenas 99.6 1.8E-13 3.9E-18 130.6 24.2 165 52-251 4-169 (388)
61 PRK11445 putative oxidoreducta 99.6 6.9E-13 1.5E-17 124.5 27.4 157 54-254 2-164 (351)
62 PRK06184 hypothetical protein; 99.6 1.2E-13 2.6E-18 135.9 23.0 170 53-257 3-178 (502)
63 PLN02985 squalene monooxygenas 99.6 1.3E-12 2.7E-17 127.8 29.8 169 51-255 41-216 (514)
64 PRK06617 2-octaprenyl-6-methox 99.6 2.6E-13 5.5E-18 128.7 24.3 293 54-406 2-307 (374)
65 PLN00093 geranylgeranyl diphos 99.6 8.5E-13 1.8E-17 126.9 27.9 160 51-255 37-207 (450)
66 PRK07190 hypothetical protein; 99.6 1.9E-13 4.2E-18 132.9 23.5 167 52-259 4-177 (487)
67 PF05834 Lycopene_cycl: Lycope 99.6 3.7E-13 8.1E-18 127.1 24.0 200 182-408 80-290 (374)
68 KOG1298 Squalene monooxygenase 99.6 3E-13 6.6E-18 120.0 20.4 216 51-313 43-266 (509)
69 PRK04176 ribulose-1,5-biphosph 99.6 3.8E-14 8.1E-19 125.8 14.9 145 52-255 24-181 (257)
70 TIGR01989 COQ6 Ubiquinone bios 99.6 1.7E-13 3.7E-18 132.4 20.8 176 54-258 1-194 (437)
71 PF01494 FAD_binding_3: FAD bi 99.6 1.4E-13 3E-18 130.0 19.1 301 54-407 2-326 (356)
72 PRK06753 hypothetical protein; 99.6 5.9E-13 1.3E-17 126.5 23.2 155 55-254 2-159 (373)
73 COG2081 Predicted flavoprotein 99.6 4.1E-14 8.9E-19 127.5 13.9 153 52-249 2-169 (408)
74 PRK06183 mhpA 3-(3-hydroxyphen 99.6 3.8E-13 8.2E-18 133.5 22.1 169 52-258 9-185 (538)
75 COG1635 THI4 Ribulose 1,5-bisp 99.6 1.6E-13 3.4E-18 112.9 15.0 144 52-254 29-185 (262)
76 TIGR02028 ChlP geranylgeranyl 99.6 3.1E-12 6.7E-17 121.9 25.9 71 184-255 88-168 (398)
77 PRK08294 phenol 2-monooxygenas 99.6 1.8E-12 4E-17 129.9 25.2 173 51-258 30-221 (634)
78 PRK06996 hypothetical protein; 99.5 4.5E-13 9.8E-18 128.1 19.7 300 51-407 9-326 (398)
79 PRK05868 hypothetical protein; 99.5 5.2E-12 1.1E-16 119.4 26.6 203 184-407 100-317 (372)
80 PRK08243 4-hydroxybenzoate 3-m 99.5 5.2E-12 1.1E-16 120.6 26.8 159 53-254 2-170 (392)
81 PRK07588 hypothetical protein; 99.5 2.5E-12 5.4E-17 122.9 24.5 64 184-251 98-162 (391)
82 TIGR00292 thiazole biosynthesi 99.5 3.7E-13 8.1E-18 119.0 17.4 143 52-253 20-176 (254)
83 PF01946 Thi4: Thi4 family; PD 99.5 1.5E-13 3.3E-18 113.9 13.6 141 52-251 16-169 (230)
84 PRK08132 FAD-dependent oxidore 99.5 1.5E-12 3.3E-17 129.5 23.2 169 51-258 21-196 (547)
85 PF03486 HI0933_like: HI0933-l 99.5 9E-14 2E-18 130.9 13.3 151 54-248 1-167 (409)
86 PRK06475 salicylate hydroxylas 99.5 3.5E-12 7.7E-17 122.1 24.1 69 184-254 102-174 (400)
87 PRK06126 hypothetical protein; 99.5 6.7E-12 1.4E-16 125.0 26.8 182 51-256 5-197 (545)
88 PRK06481 fumarate reductase fl 99.5 3.7E-13 8.1E-18 132.0 17.3 182 51-251 59-255 (506)
89 PRK07538 hypothetical protein; 99.5 3.9E-12 8.4E-17 122.3 23.4 68 184-253 97-171 (413)
90 PRK07804 L-aspartate oxidase; 99.5 1E-12 2.3E-17 129.7 19.7 169 51-248 14-211 (541)
91 TIGR01813 flavo_cyto_c flavocy 99.5 3.6E-13 7.8E-18 130.6 15.5 178 55-251 1-196 (439)
92 PRK07121 hypothetical protein; 99.5 7.7E-13 1.7E-17 129.8 17.4 64 187-251 175-243 (492)
93 TIGR01789 lycopene_cycl lycope 99.5 1.7E-12 3.8E-17 122.0 18.7 269 55-406 1-285 (370)
94 PTZ00367 squalene epoxidase; P 99.5 4.5E-12 9.7E-17 124.6 22.1 164 51-255 31-227 (567)
95 TIGR02360 pbenz_hydroxyl 4-hyd 99.5 2.1E-11 4.6E-16 116.1 26.0 64 188-253 102-169 (390)
96 PRK08274 tricarballylate dehyd 99.5 3.7E-13 8E-18 131.4 13.6 187 51-250 2-195 (466)
97 PRK06452 sdhA succinate dehydr 99.5 3.3E-12 7.2E-17 126.7 18.3 162 52-248 4-199 (566)
98 TIGR00551 nadB L-aspartate oxi 99.5 5E-12 1.1E-16 123.7 19.0 161 53-249 2-191 (488)
99 PF00890 FAD_binding_2: FAD bi 99.5 3.5E-12 7.7E-17 123.0 17.8 166 55-248 1-204 (417)
100 KOG2614 Kynurenine 3-monooxyge 99.5 9.4E-12 2E-16 112.6 19.0 298 53-406 2-322 (420)
101 PLN02815 L-aspartate oxidase 99.4 5.7E-12 1.2E-16 124.8 18.5 168 51-248 27-223 (594)
102 PTZ00139 Succinate dehydrogena 99.4 4.6E-12 9.9E-17 126.6 17.8 177 51-249 27-231 (617)
103 PRK05192 tRNA uridine 5-carbox 99.4 2.6E-12 5.7E-17 124.8 15.1 152 52-249 3-159 (618)
104 PLN00128 Succinate dehydrogena 99.4 5.8E-12 1.3E-16 125.9 18.0 177 52-250 49-253 (635)
105 PRK09078 sdhA succinate dehydr 99.4 9.3E-12 2E-16 124.2 18.8 177 52-250 11-215 (598)
106 PRK08071 L-aspartate oxidase; 99.4 4.6E-12 1E-16 124.2 16.2 164 53-248 3-191 (510)
107 PRK07573 sdhA succinate dehydr 99.4 8.1E-12 1.8E-16 125.3 17.7 172 51-249 33-234 (640)
108 PRK08958 sdhA succinate dehydr 99.4 6.4E-12 1.4E-16 125.0 16.9 175 52-249 6-208 (588)
109 PF06039 Mqo: Malate:quinone o 99.4 6.6E-12 1.4E-16 115.7 15.5 221 52-273 2-275 (488)
110 COG1249 Lpd Pyruvate/2-oxoglut 99.4 1.2E-12 2.6E-17 124.2 10.9 128 3-247 138-272 (454)
111 PRK12835 3-ketosteroid-delta-1 99.4 8.1E-12 1.7E-16 124.2 17.2 51 50-100 8-58 (584)
112 PRK07803 sdhA succinate dehydr 99.4 1.1E-11 2.3E-16 124.4 18.1 163 52-249 7-215 (626)
113 PRK08641 sdhA succinate dehydr 99.4 1.5E-11 3.3E-16 122.5 19.0 166 53-248 3-201 (589)
114 PRK06175 L-aspartate oxidase; 99.4 7E-12 1.5E-16 120.5 16.0 164 52-248 3-190 (433)
115 PRK07236 hypothetical protein; 99.4 1.8E-10 4E-15 109.8 25.6 152 52-252 5-159 (386)
116 PRK05945 sdhA succinate dehydr 99.4 9E-12 1.9E-16 124.1 17.1 59 189-249 135-199 (575)
117 PRK07395 L-aspartate oxidase; 99.4 1.1E-11 2.3E-16 122.4 17.0 162 51-248 7-198 (553)
118 TIGR01812 sdhA_frdA_Gneg succi 99.4 1.4E-11 3.1E-16 123.0 18.0 164 55-249 1-193 (566)
119 PRK12845 3-ketosteroid-delta-1 99.4 1.5E-11 3.3E-16 121.5 18.0 61 189-251 217-282 (564)
120 PRK07057 sdhA succinate dehydr 99.4 1.7E-11 3.7E-16 122.2 18.2 176 51-249 10-213 (591)
121 TIGR03219 salicylate_mono sali 99.4 1.2E-10 2.5E-15 112.2 23.4 62 185-251 101-163 (414)
122 PLN02927 antheraxanthin epoxid 99.4 4.1E-10 8.9E-15 111.6 27.4 168 51-251 79-252 (668)
123 PRK06134 putative FAD-binding 99.4 1.3E-11 2.8E-16 123.1 16.3 67 184-252 212-283 (581)
124 PRK12839 hypothetical protein; 99.4 1.6E-11 3.4E-16 121.7 16.7 65 186-251 211-280 (572)
125 PRK06069 sdhA succinate dehydr 99.4 1.5E-11 3.2E-16 122.7 16.6 168 51-248 3-201 (577)
126 PRK08205 sdhA succinate dehydr 99.4 2.2E-11 4.8E-16 121.4 17.6 173 52-250 4-209 (583)
127 KOG1336 Monodehydroascorbate/f 99.4 2.2E-12 4.8E-17 118.5 9.5 144 1-251 170-317 (478)
128 PRK09231 fumarate reductase fl 99.4 2.1E-11 4.6E-16 121.3 17.1 164 51-249 2-198 (582)
129 PRK07512 L-aspartate oxidase; 99.4 2.1E-11 4.6E-16 119.6 16.8 161 51-248 7-198 (513)
130 TIGR01176 fum_red_Fp fumarate 99.4 3.1E-11 6.7E-16 119.8 18.0 167 53-249 3-197 (580)
131 PRK14989 nitrite reductase sub 99.4 2.4E-12 5.2E-17 132.2 10.0 141 3-251 104-249 (847)
132 PRK06263 sdhA succinate dehydr 99.4 4.1E-11 9E-16 118.8 18.5 162 52-248 6-198 (543)
133 PRK08626 fumarate reductase fl 99.4 2.7E-11 5.8E-16 121.8 17.2 177 52-249 4-222 (657)
134 PRK12842 putative succinate de 99.4 2.7E-11 5.9E-16 120.7 17.2 61 189-251 214-279 (574)
135 PLN02661 Putative thiazole syn 99.3 2.2E-11 4.7E-16 110.6 14.6 139 52-248 91-245 (357)
136 PF01134 GIDA: Glucose inhibit 99.3 6.3E-12 1.4E-16 115.9 11.2 63 183-246 89-151 (392)
137 PRK08401 L-aspartate oxidase; 99.3 2.2E-11 4.8E-16 118.4 15.4 61 188-251 119-179 (466)
138 PRK09754 phenylpropionate diox 99.3 5.1E-12 1.1E-16 120.6 10.8 140 2-251 102-245 (396)
139 PRK04965 NADH:flavorubredoxin 99.3 5.8E-12 1.3E-16 119.6 10.6 138 3-250 102-242 (377)
140 PF12831 FAD_oxidored: FAD dep 99.3 1.3E-12 2.8E-17 125.5 5.8 143 55-245 1-148 (428)
141 PRK12834 putative FAD-binding 99.3 7.4E-11 1.6E-15 117.1 17.8 50 51-100 2-53 (549)
142 PF04820 Trp_halogenase: Trypt 99.3 1.7E-10 3.7E-15 111.2 19.5 71 179-250 144-214 (454)
143 TIGR02374 nitri_red_nirB nitri 99.3 7.3E-12 1.6E-16 128.8 10.5 139 3-251 99-242 (785)
144 PRK09077 L-aspartate oxidase; 99.3 1.3E-10 2.9E-15 114.8 18.9 168 51-249 6-209 (536)
145 PRK12837 3-ketosteroid-delta-1 99.3 9.1E-11 2E-15 115.4 17.4 61 189-250 173-238 (513)
146 PRK06854 adenylylsulfate reduc 99.3 5.9E-11 1.3E-15 118.7 15.9 61 187-249 130-197 (608)
147 PRK06416 dihydrolipoamide dehy 99.3 9.9E-12 2.1E-16 121.3 10.2 131 3-249 137-274 (462)
148 PRK12843 putative FAD-binding 99.3 8.4E-11 1.8E-15 117.2 16.7 64 186-251 218-286 (578)
149 PRK12844 3-ketosteroid-delta-1 99.3 1.3E-10 2.8E-15 115.3 17.8 61 189-251 208-273 (557)
150 PF13738 Pyr_redox_3: Pyridine 99.3 2E-11 4.4E-16 105.5 10.8 61 186-249 79-140 (203)
151 TIGR01811 sdhA_Bsu succinate d 99.3 9.1E-11 2E-15 117.1 16.2 44 56-99 1-45 (603)
152 PRK05976 dihydrolipoamide dehy 99.3 1.6E-11 3.5E-16 119.9 10.6 133 3-249 145-283 (472)
153 PRK07843 3-ketosteroid-delta-1 99.3 5.3E-11 1.2E-15 118.0 14.3 50 51-100 5-54 (557)
154 TIGR01421 gluta_reduc_1 glutat 99.3 2.1E-11 4.6E-16 118.0 11.2 132 3-250 132-268 (450)
155 PRK05249 soluble pyridine nucl 99.3 1.3E-11 2.8E-16 120.5 9.7 131 3-249 140-274 (461)
156 PRK08275 putative oxidoreducta 99.3 7.3E-11 1.6E-15 117.2 14.5 60 189-249 137-202 (554)
157 PTZ00306 NADH-dependent fumara 99.3 2.2E-10 4.8E-15 122.4 19.0 51 50-100 406-456 (1167)
158 TIGR00136 gidA glucose-inhibit 99.3 7.7E-11 1.7E-15 114.5 14.0 63 184-247 91-154 (617)
159 COG0029 NadB Aspartate oxidase 99.3 1.3E-10 2.7E-15 107.7 14.7 166 55-251 9-200 (518)
160 PTZ00058 glutathione reductase 99.3 3.5E-11 7.5E-16 118.3 11.2 129 3-248 205-337 (561)
161 PRK06116 glutathione reductase 99.3 3.7E-11 8E-16 116.8 11.3 131 3-249 134-267 (450)
162 PRK06370 mercuric reductase; V 99.2 3.8E-11 8.2E-16 117.1 11.0 66 3-86 136-204 (463)
163 PRK07818 dihydrolipoamide dehy 99.2 3.7E-11 8E-16 117.2 10.9 131 3-249 138-275 (466)
164 TIGR01423 trypano_reduc trypan 99.2 4.4E-11 9.6E-16 116.3 10.9 131 3-249 154-290 (486)
165 PRK06115 dihydrolipoamide dehy 99.2 3.6E-11 7.7E-16 117.1 9.8 66 3-86 139-207 (466)
166 TIGR01350 lipoamide_DH dihydro 99.2 4.2E-11 9.1E-16 117.0 10.2 132 3-250 134-272 (461)
167 PRK07251 pyridine nucleotide-d 99.2 3.5E-11 7.6E-16 116.5 9.5 129 3-248 121-254 (438)
168 PRK07845 flavoprotein disulfid 99.2 4.3E-11 9.4E-16 116.5 9.8 132 3-250 142-277 (466)
169 TIGR01424 gluta_reduc_2 glutat 99.2 6.1E-11 1.3E-15 114.9 10.7 130 3-249 133-265 (446)
170 COG3380 Predicted NAD/FAD-depe 99.2 1.4E-09 3.1E-14 92.7 17.4 303 54-407 2-328 (331)
171 PRK06912 acoL dihydrolipoamide 99.2 6.1E-11 1.3E-15 115.3 10.4 66 3-86 135-203 (458)
172 PLN02507 glutathione reductase 99.2 6.2E-11 1.3E-15 116.0 10.3 130 3-249 170-302 (499)
173 PRK13512 coenzyme A disulfide 99.2 4.1E-11 8.9E-16 115.8 8.8 135 3-249 108-243 (438)
174 PRK07846 mycothione reductase; 99.2 5.3E-11 1.1E-15 115.3 9.3 66 3-86 131-199 (451)
175 TIGR02053 MerA mercuric reduct 99.2 7.5E-11 1.6E-15 115.1 10.5 66 3-86 131-199 (463)
176 TIGR02485 CobZ_N-term precorri 99.2 1.2E-10 2.6E-15 112.5 11.5 62 189-251 123-187 (432)
177 PLN02172 flavin-containing mon 99.2 8.8E-10 1.9E-14 106.3 17.0 60 187-249 109-175 (461)
178 PF00070 Pyr_redox: Pyridine n 99.2 5.8E-11 1.3E-15 85.5 6.6 32 55-86 1-32 (80)
179 TIGR01292 TRX_reduct thioredox 99.2 2.1E-10 4.5E-15 105.6 12.1 112 54-248 1-113 (300)
180 TIGR02734 crtI_fam phytoene de 99.2 7.1E-09 1.5E-13 102.4 23.4 58 189-248 219-277 (502)
181 PRK06327 dihydrolipoamide dehy 99.2 1.1E-10 2.4E-15 114.1 10.4 131 3-249 148-286 (475)
182 COG1252 Ndh NADH dehydrogenase 99.2 1.6E-11 3.4E-16 113.8 4.1 147 3-251 102-266 (405)
183 TIGR03385 CoA_CoA_reduc CoA-di 99.2 1.2E-10 2.7E-15 112.4 9.8 137 3-249 94-235 (427)
184 TIGR03452 mycothione_red mycot 99.2 1.1E-10 2.4E-15 113.2 9.3 66 3-86 134-202 (452)
185 TIGR01438 TGR thioredoxin and 99.2 1.7E-10 3.6E-15 112.5 10.4 130 3-249 146-281 (484)
186 COG1251 NirB NAD(P)H-nitrite r 99.2 4.2E-11 9E-16 115.6 6.0 140 3-251 104-247 (793)
187 TIGR02061 aprA adenosine phosp 99.1 8.3E-10 1.8E-14 109.6 15.3 58 190-248 127-192 (614)
188 PRK08255 salicylyl-CoA 5-hydro 99.1 3.3E-09 7.1E-14 109.2 19.9 52 185-251 93-145 (765)
189 TIGR03378 glycerol3P_GlpB glyc 99.1 3.1E-09 6.7E-14 99.4 17.9 63 187-251 261-327 (419)
190 TIGR00275 flavoprotein, HI0933 99.1 8.7E-10 1.9E-14 105.1 14.6 56 188-247 104-160 (400)
191 PTZ00153 lipoamide dehydrogena 99.1 1.5E-10 3.1E-15 115.6 9.3 66 3-86 277-345 (659)
192 PRK08010 pyridine nucleotide-d 99.1 1.9E-10 4.1E-15 111.6 9.9 130 3-249 122-256 (441)
193 COG0492 TrxB Thioredoxin reduc 99.1 4.5E-10 9.7E-15 101.6 11.4 117 52-251 2-119 (305)
194 PRK09564 coenzyme A disulfide 99.1 2.5E-10 5.3E-15 111.1 10.4 137 3-248 106-247 (444)
195 PRK06467 dihydrolipoamide dehy 99.1 1.8E-10 3.8E-15 112.3 9.2 66 3-86 139-207 (471)
196 PLN02546 glutathione reductase 99.1 2.7E-10 5.9E-15 112.1 10.4 132 3-250 219-353 (558)
197 COG1053 SdhA Succinate dehydro 99.1 1.1E-09 2.4E-14 107.2 14.5 161 51-247 4-202 (562)
198 PRK07233 hypothetical protein; 99.1 5.7E-08 1.2E-12 94.4 26.4 55 189-246 198-253 (434)
199 PRK13800 putative oxidoreducta 99.1 2.4E-09 5.1E-14 112.1 17.7 38 51-88 11-48 (897)
200 PRK14727 putative mercuric red 99.1 3.9E-10 8.4E-15 110.3 10.6 130 3-250 153-286 (479)
201 PTZ00052 thioredoxin reductase 99.1 3.5E-10 7.6E-15 110.8 10.1 130 3-249 147-280 (499)
202 KOG2415 Electron transfer flav 99.1 1.2E-09 2.6E-14 98.4 12.1 159 51-248 74-257 (621)
203 PRK14694 putative mercuric red 99.1 4.2E-10 9.2E-15 109.8 9.6 130 3-250 143-276 (468)
204 PLN02612 phytoene desaturase 99.1 5.2E-08 1.1E-12 97.0 24.2 59 189-248 308-367 (567)
205 PTZ00318 NADH dehydrogenase-li 99.1 2.3E-10 5E-15 110.1 7.1 51 194-251 233-284 (424)
206 PRK13748 putative mercuric red 99.0 8.9E-10 1.9E-14 110.3 10.6 129 3-249 235-367 (561)
207 PRK06116 glutathione reductase 99.0 4.2E-09 9E-14 102.5 14.7 38 52-89 3-40 (450)
208 PRK05976 dihydrolipoamide dehy 99.0 8.6E-09 1.9E-13 100.8 17.0 38 51-88 2-39 (472)
209 PRK15317 alkyl hydroperoxide r 99.0 3E-09 6.6E-14 105.0 13.9 114 51-248 209-323 (517)
210 TIGR01424 gluta_reduc_2 glutat 99.0 4E-09 8.6E-14 102.3 14.5 37 53-89 2-38 (446)
211 TIGR03143 AhpF_homolog putativ 99.0 1.5E-09 3.2E-14 107.9 11.6 115 52-250 3-117 (555)
212 TIGR02730 carot_isom carotene 99.0 7.1E-09 1.5E-13 102.0 15.4 59 189-249 229-288 (493)
213 COG2072 TrkA Predicted flavopr 99.0 3.1E-09 6.6E-14 102.2 12.2 36 51-86 6-42 (443)
214 PRK06416 dihydrolipoamide dehy 99.0 8.9E-09 1.9E-13 100.6 15.7 37 52-88 3-39 (462)
215 COG0446 HcaD Uncharacterized N 99.0 1.5E-09 3.3E-14 104.6 10.1 141 2-251 96-241 (415)
216 TIGR01421 gluta_reduc_1 glutat 99.0 1.1E-08 2.3E-13 99.3 15.4 37 53-89 2-38 (450)
217 COG2509 Uncharacterized FAD-de 99.0 7.4E-09 1.6E-13 95.1 13.2 70 180-251 164-234 (486)
218 PRK06467 dihydrolipoamide dehy 99.0 1.6E-08 3.4E-13 98.7 16.3 36 51-86 2-37 (471)
219 PRK06327 dihydrolipoamide dehy 99.0 1.2E-08 2.7E-13 99.7 15.4 33 52-84 3-35 (475)
220 PRK10262 thioredoxin reductase 99.0 1.7E-09 3.7E-14 100.4 9.0 100 53-251 146-252 (321)
221 TIGR03140 AhpF alkyl hydropero 99.0 7.3E-09 1.6E-13 102.2 13.8 114 51-248 210-324 (515)
222 TIGR01316 gltA glutamate synth 99.0 5.7E-09 1.2E-13 101.1 12.4 82 2-86 220-305 (449)
223 PRK08010 pyridine nucleotide-d 99.0 7.8E-09 1.7E-13 100.3 13.3 34 53-86 3-36 (441)
224 PRK06370 mercuric reductase; V 99.0 1.9E-08 4.2E-13 98.2 15.7 41 51-91 3-43 (463)
225 KOG1335 Dihydrolipoamide dehyd 99.0 1.9E-09 4.2E-14 96.2 7.7 136 3-250 176-319 (506)
226 PRK05329 anaerobic glycerol-3- 99.0 6.5E-08 1.4E-12 91.8 18.5 60 189-250 259-321 (422)
227 PRK05249 soluble pyridine nucl 98.9 1.8E-08 3.9E-13 98.5 15.3 38 52-89 4-42 (461)
228 PRK07251 pyridine nucleotide-d 98.9 9.7E-09 2.1E-13 99.6 13.1 34 53-86 3-36 (438)
229 PRK07208 hypothetical protein; 98.9 3.8E-07 8.2E-12 89.7 24.3 58 189-247 218-280 (479)
230 PRK13977 myosin-cross-reactive 98.9 1E-07 2.2E-12 92.4 19.2 62 189-251 226-297 (576)
231 PLN02507 glutathione reductase 98.9 2.7E-08 5.9E-13 97.5 15.6 34 51-84 23-56 (499)
232 COG1233 Phytoene dehydrogenase 98.9 1.8E-09 4E-14 105.4 7.4 55 189-245 224-279 (487)
233 PRK12416 protoporphyrinogen ox 98.9 6.7E-07 1.4E-11 87.5 24.8 51 190-245 227-278 (463)
234 COG0445 GidA Flavin-dependent 98.9 3.3E-09 7.2E-14 99.4 7.8 155 52-250 3-161 (621)
235 PRK12831 putative oxidoreducta 98.9 1.4E-08 3.1E-13 98.6 12.4 81 2-86 230-314 (464)
236 TIGR03169 Nterm_to_SelD pyridi 98.9 3.5E-09 7.6E-14 100.2 7.7 51 194-251 196-247 (364)
237 PRK06292 dihydrolipoamide dehy 98.9 9.7E-09 2.1E-13 100.3 10.6 34 53-86 169-202 (460)
238 PF07992 Pyr_redox_2: Pyridine 98.9 1.4E-08 3E-13 87.5 10.4 32 55-86 1-32 (201)
239 PRK10262 thioredoxin reductase 98.9 3E-08 6.5E-13 92.1 13.4 37 51-87 4-40 (321)
240 KOG1399 Flavin-containing mono 98.9 3.8E-08 8.2E-13 93.5 13.5 142 52-247 5-153 (448)
241 PLN02487 zeta-carotene desatur 98.9 1E-06 2.2E-11 86.9 24.0 61 190-251 296-364 (569)
242 PRK14694 putative mercuric red 98.9 9.1E-08 2E-12 93.5 16.6 39 51-89 4-42 (468)
243 COG1231 Monoamine oxidase [Ami 98.9 4.3E-07 9.3E-12 84.1 19.3 39 51-89 5-44 (450)
244 PTZ00363 rab-GDP dissociation 98.8 1.9E-08 4E-13 96.2 10.9 59 189-248 232-291 (443)
245 PF13454 NAD_binding_9: FAD-NA 98.8 3.6E-08 7.8E-13 80.9 11.2 36 57-92 1-41 (156)
246 TIGR02732 zeta_caro_desat caro 98.8 1.2E-06 2.5E-11 85.6 23.6 60 191-251 221-288 (474)
247 KOG2404 Fumarate reductase, fl 98.8 2.8E-08 6E-13 86.9 10.5 57 190-248 140-207 (477)
248 PRK06115 dihydrolipoamide dehy 98.8 1.2E-07 2.6E-12 92.5 15.9 34 53-86 3-36 (466)
249 PLN02546 glutathione reductase 98.8 9.5E-08 2.1E-12 94.4 15.2 33 52-84 78-110 (558)
250 PRK07818 dihydrolipoamide dehy 98.8 1.7E-07 3.7E-12 91.6 16.3 39 53-91 4-42 (466)
251 TIGR02053 MerA mercuric reduct 98.8 9.8E-08 2.1E-12 93.3 14.3 37 54-90 1-37 (463)
252 TIGR03140 AhpF alkyl hydropero 98.8 3.7E-08 8E-13 97.2 11.3 34 53-86 352-385 (515)
253 PTZ00058 glutathione reductase 98.8 1.1E-07 2.4E-12 93.9 14.4 39 51-89 46-84 (561)
254 TIGR00562 proto_IX_ox protopor 98.8 9.7E-06 2.1E-10 79.4 28.0 37 53-89 2-43 (462)
255 KOG0405 Pyridine nucleotide-di 98.8 1.4E-08 3E-13 89.6 7.0 131 3-249 156-289 (478)
256 PRK11883 protoporphyrinogen ox 98.8 7.1E-06 1.5E-10 80.1 26.9 35 55-89 2-39 (451)
257 TIGR01350 lipoamide_DH dihydro 98.8 7.7E-08 1.7E-12 94.1 13.0 36 54-89 2-37 (461)
258 PTZ00052 thioredoxin reductase 98.8 2.2E-07 4.8E-12 91.2 15.9 33 53-85 5-37 (499)
259 PRK07845 flavoprotein disulfid 98.8 3.4E-07 7.4E-12 89.3 17.1 35 54-88 2-36 (466)
260 PF00743 FMO-like: Flavin-bind 98.8 2.5E-08 5.4E-13 97.7 8.8 142 54-249 2-152 (531)
261 KOG4254 Phytoene desaturase [C 98.8 2.7E-07 5.9E-12 84.5 14.5 59 189-249 264-323 (561)
262 PRK13748 putative mercuric red 98.7 2.6E-07 5.6E-12 92.7 16.0 38 52-89 97-134 (561)
263 TIGR01810 betA choline dehydro 98.7 7.3E-08 1.6E-12 95.7 11.6 58 193-251 197-260 (532)
264 PRK06292 dihydrolipoamide dehy 98.7 3.2E-07 7E-12 89.7 16.0 36 53-88 3-38 (460)
265 PTZ00318 NADH dehydrogenase-li 98.7 1.2E-07 2.6E-12 91.4 12.8 36 51-86 8-43 (424)
266 COG1232 HemY Protoporphyrinoge 98.7 6.8E-06 1.5E-10 77.9 23.9 32 55-86 2-35 (444)
267 TIGR02731 phytoene_desat phyto 98.7 2.2E-07 4.7E-12 90.7 14.5 59 188-247 212-276 (453)
268 PRK12779 putative bifunctional 98.7 6.6E-08 1.4E-12 100.9 11.2 35 52-86 305-339 (944)
269 TIGR01292 TRX_reduct thioredox 98.7 1.1E-07 2.5E-12 87.3 11.1 34 53-86 141-174 (300)
270 KOG2311 NAD/FAD-utilizing prot 98.7 8.6E-08 1.9E-12 88.2 9.8 156 51-248 26-187 (679)
271 PRK12770 putative glutamate sy 98.7 1.3E-07 2.8E-12 89.0 11.0 34 53-86 172-206 (352)
272 PRK09897 hypothetical protein; 98.7 2E-07 4.3E-12 91.1 12.6 38 54-91 2-42 (534)
273 COG3075 GlpB Anaerobic glycero 98.7 1.3E-06 2.7E-11 77.1 15.9 58 190-249 259-319 (421)
274 PRK12778 putative bifunctional 98.7 1.4E-07 3E-12 97.4 11.9 81 2-86 519-604 (752)
275 PRK11749 dihydropyrimidine deh 98.7 2.2E-07 4.8E-12 90.5 12.6 34 53-86 273-307 (457)
276 PF00732 GMC_oxred_N: GMC oxid 98.7 1.6E-08 3.5E-13 92.8 4.3 33 54-86 1-34 (296)
277 PRK09564 coenzyme A disulfide 98.7 1.7E-07 3.7E-12 91.2 11.6 32 55-86 2-35 (444)
278 PRK06912 acoL dihydrolipoamide 98.7 5.5E-07 1.2E-11 87.8 15.0 35 55-89 2-36 (458)
279 TIGR03169 Nterm_to_SelD pyridi 98.7 8.6E-08 1.9E-12 90.7 9.0 50 194-248 59-108 (364)
280 COG3573 Predicted oxidoreducta 98.7 1.5E-07 3.3E-12 82.8 9.4 50 52-101 4-56 (552)
281 PRK15317 alkyl hydroperoxide r 98.7 1.9E-07 4.1E-12 92.3 11.4 34 53-86 351-384 (517)
282 PRK14727 putative mercuric red 98.6 9.4E-07 2E-11 86.6 16.0 36 51-86 14-49 (479)
283 COG1252 Ndh NADH dehydrogenase 98.6 1.3E-07 2.9E-12 87.9 9.2 110 53-251 3-115 (405)
284 TIGR01372 soxA sarcosine oxida 98.6 3.8E-07 8.2E-12 96.6 13.7 35 52-86 162-196 (985)
285 COG1249 Lpd Pyruvate/2-oxoglut 98.6 8.8E-07 1.9E-11 84.6 14.8 39 51-89 2-41 (454)
286 PRK09853 putative selenate red 98.6 1.1E-07 2.4E-12 98.0 9.3 35 52-86 538-572 (1019)
287 PRK07846 mycothione reductase; 98.6 9.8E-07 2.1E-11 85.7 15.2 36 53-90 1-36 (451)
288 PRK05335 tRNA (uracil-5-)-meth 98.6 6.9E-07 1.5E-11 83.7 12.0 34 53-86 2-35 (436)
289 TIGR01438 TGR thioredoxin and 98.6 2.4E-06 5.2E-11 83.6 16.3 34 53-86 2-35 (484)
290 PRK09754 phenylpropionate diox 98.6 2.6E-07 5.7E-12 88.3 9.5 44 201-248 69-113 (396)
291 PRK02106 choline dehydrogenase 98.6 9.5E-07 2.1E-11 88.3 13.8 36 51-86 3-39 (560)
292 PRK05675 sdhA succinate dehydr 98.6 1.4E-06 2.9E-11 87.0 14.7 61 188-249 125-191 (570)
293 KOG3855 Monooxygenase involved 98.6 3.1E-06 6.7E-11 77.0 15.2 71 182-252 143-222 (481)
294 KOG1346 Programmed cell death 98.6 8.5E-08 1.8E-12 86.7 5.3 55 194-251 398-453 (659)
295 PF13434 K_oxygenase: L-lysine 98.6 2.5E-07 5.4E-12 85.8 8.6 36 51-86 188-225 (341)
296 PF13450 NAD_binding_8: NAD(P) 98.5 1.3E-07 2.7E-12 65.2 4.9 32 58-89 1-33 (68)
297 TIGR01372 soxA sarcosine oxida 98.5 8.4E-07 1.8E-11 94.0 13.5 131 2-251 276-415 (985)
298 KOG2960 Protein involved in th 98.5 5.8E-08 1.3E-12 79.8 3.5 39 53-91 76-117 (328)
299 TIGR03143 AhpF_homolog putativ 98.5 5.1E-07 1.1E-11 89.9 10.7 34 53-86 143-176 (555)
300 PRK12831 putative oxidoreducta 98.5 3E-07 6.5E-12 89.4 8.2 36 51-86 138-173 (464)
301 TIGR01423 trypano_reduc trypan 98.5 8.8E-07 1.9E-11 86.5 11.3 34 52-85 2-36 (486)
302 TIGR03315 Se_ygfK putative sel 98.5 5.1E-07 1.1E-11 93.7 9.9 35 52-86 536-570 (1012)
303 TIGR03452 mycothione_red mycot 98.5 2.5E-06 5.5E-11 82.9 14.1 35 53-89 2-36 (452)
304 PRK12810 gltD glutamate syntha 98.5 1.3E-06 2.8E-11 85.4 11.6 51 196-248 336-401 (471)
305 PRK13512 coenzyme A disulfide 98.5 9.2E-07 2E-11 85.7 10.6 33 54-86 2-36 (438)
306 PRK12779 putative bifunctional 98.5 1.1E-06 2.3E-11 92.1 11.3 83 2-86 394-480 (944)
307 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 2.5E-06 5.5E-11 80.5 12.3 33 54-86 1-33 (433)
308 PRK12775 putative trifunctiona 98.4 5E-07 1.1E-11 95.3 8.1 35 52-86 429-463 (1006)
309 TIGR01318 gltD_gamma_fam gluta 98.4 2.5E-06 5.4E-11 83.1 12.3 34 53-86 282-316 (467)
310 COG3634 AhpF Alkyl hydroperoxi 98.4 4.3E-07 9.2E-12 80.5 6.0 62 189-251 266-329 (520)
311 KOG4716 Thioredoxin reductase 98.4 1.9E-07 4.2E-12 82.3 3.8 66 3-86 164-231 (503)
312 PTZ00153 lipoamide dehydrogena 98.4 4.7E-06 1E-10 83.7 14.1 33 53-85 116-148 (659)
313 PRK12778 putative bifunctional 98.4 5.5E-07 1.2E-11 93.1 7.7 35 52-86 430-464 (752)
314 PRK12770 putative glutamate sy 98.4 9.2E-07 2E-11 83.2 8.6 36 51-86 16-51 (352)
315 PRK04965 NADH:flavorubredoxin 98.4 1.8E-06 3.8E-11 82.1 10.6 33 54-86 3-37 (377)
316 PRK11749 dihydropyrimidine deh 98.4 9E-07 1.9E-11 86.3 8.7 36 51-86 138-173 (457)
317 PRK12775 putative trifunctiona 98.4 3.9E-06 8.5E-11 88.7 13.4 82 2-86 519-605 (1006)
318 PLN02852 ferredoxin-NADP+ redu 98.4 2.3E-06 5E-11 82.7 10.7 35 52-86 25-61 (491)
319 KOG2495 NADH-dehydrogenase (ub 98.4 6.3E-07 1.4E-11 81.8 6.2 149 3-251 161-333 (491)
320 TIGR01316 gltA glutamate synth 98.3 1.2E-06 2.7E-11 84.9 7.6 35 52-86 132-166 (449)
321 PRK14989 nitrite reductase sub 98.3 2.7E-06 5.8E-11 88.2 10.2 47 197-248 67-114 (847)
322 PRK09853 putative selenate red 98.3 3.5E-06 7.7E-11 87.2 10.9 34 53-86 668-703 (1019)
323 KOG0404 Thioredoxin reductase 98.3 5.5E-06 1.2E-10 69.0 9.7 122 53-252 8-129 (322)
324 TIGR02374 nitri_red_nirB nitri 98.3 1.8E-06 3.9E-11 89.4 8.5 48 196-248 61-109 (785)
325 COG2907 Predicted NAD/FAD-bind 98.3 8.8E-06 1.9E-10 72.5 11.3 38 51-89 6-44 (447)
326 PLN02172 flavin-containing mon 98.3 2E-06 4.4E-11 83.2 7.6 34 53-86 204-237 (461)
327 TIGR01318 gltD_gamma_fam gluta 98.3 3E-06 6.5E-11 82.6 8.8 35 52-86 140-174 (467)
328 PRK12814 putative NADPH-depend 98.3 5.7E-06 1.2E-10 83.9 10.9 35 52-86 322-357 (652)
329 PRK12810 gltD glutamate syntha 98.3 2.7E-06 5.8E-11 83.2 8.1 35 52-86 142-176 (471)
330 TIGR02462 pyranose_ox pyranose 98.3 4.1E-05 8.8E-10 75.0 16.1 34 54-87 1-34 (544)
331 PRK06567 putative bifunctional 98.2 1.5E-06 3.3E-11 88.8 6.2 36 51-86 381-416 (1028)
332 PRK12769 putative oxidoreducta 98.2 2.8E-06 6.1E-11 86.4 8.1 35 52-86 326-360 (654)
333 PLN02785 Protein HOTHEAD 98.2 5.5E-05 1.2E-09 75.5 16.7 35 51-86 53-87 (587)
334 PRK12814 putative NADPH-depend 98.2 4.6E-06 1E-10 84.6 8.4 35 52-86 192-226 (652)
335 KOG0685 Flavin-containing amin 98.2 4.1E-05 9E-10 71.3 13.4 39 51-89 19-59 (498)
336 PRK12769 putative oxidoreducta 98.2 2.3E-05 5E-10 79.9 13.1 34 53-86 468-502 (654)
337 TIGR01816 sdhA_forward succina 98.2 2.7E-05 5.8E-10 77.8 13.2 61 188-250 118-184 (565)
338 PRK13984 putative oxidoreducta 98.2 2E-05 4.3E-10 79.7 12.2 31 53-83 418-454 (604)
339 TIGR01317 GOGAT_sm_gam glutama 98.1 6.5E-06 1.4E-10 80.6 8.2 35 52-86 142-176 (485)
340 TIGR01317 GOGAT_sm_gam glutama 98.1 1.5E-05 3.3E-10 78.0 10.3 34 53-86 283-317 (485)
341 KOG1335 Dihydrolipoamide dehyd 98.1 3.1E-05 6.7E-10 70.0 11.1 39 52-90 38-76 (506)
342 KOG0029 Amine oxidase [Seconda 98.1 3E-06 6.6E-11 82.1 5.3 39 51-89 13-52 (501)
343 COG0492 TrxB Thioredoxin reduc 98.1 3.2E-05 6.9E-10 70.3 11.5 70 2-86 105-176 (305)
344 PF13434 K_oxygenase: L-lysine 98.1 2.7E-05 5.9E-10 72.3 10.9 34 53-86 2-36 (341)
345 TIGR03315 Se_ygfK putative sel 98.1 1.7E-05 3.7E-10 82.7 10.0 35 52-86 665-701 (1012)
346 PRK12809 putative oxidoreducta 98.1 1.1E-05 2.3E-10 81.9 8.1 35 52-86 309-343 (639)
347 PLN02852 ferredoxin-NADP+ redu 98.1 6.5E-05 1.4E-09 72.9 12.9 69 2-75 116-188 (491)
348 TIGR02733 desat_CrtD C-3',4' d 98.0 5.2E-06 1.1E-10 81.9 5.4 57 189-247 232-294 (492)
349 PTZ00188 adrenodoxin reductase 98.0 2.8E-05 6E-10 74.3 9.8 35 52-86 38-73 (506)
350 COG3349 Uncharacterized conser 98.0 5.4E-06 1.2E-10 78.4 4.9 36 54-89 1-37 (485)
351 COG4529 Uncharacterized protei 98.0 7.4E-05 1.6E-09 70.2 12.2 38 54-91 2-43 (474)
352 PLN02268 probable polyamine ox 98.0 6.3E-06 1.4E-10 80.0 5.2 36 54-89 1-37 (435)
353 TIGR00031 UDP-GALP_mutase UDP- 98.0 1.4E-05 3.1E-10 74.8 7.3 36 54-89 2-38 (377)
354 COG0562 Glf UDP-galactopyranos 98.0 8E-06 1.7E-10 72.0 5.2 39 54-92 2-41 (374)
355 PRK12809 putative oxidoreducta 98.0 0.00011 2.3E-09 74.7 13.9 34 53-86 451-485 (639)
356 PLN02576 protoporphyrinogen ox 98.0 8.4E-06 1.8E-10 80.6 5.7 40 51-90 10-51 (496)
357 PRK12771 putative glutamate sy 98.0 1.9E-05 4E-10 79.2 8.1 36 51-86 135-170 (564)
358 PRK13984 putative oxidoreducta 98.0 2.1E-05 4.6E-10 79.5 7.8 36 51-86 281-316 (604)
359 PRK06567 putative bifunctional 97.9 7E-05 1.5E-09 77.1 10.8 79 3-86 500-586 (1028)
360 COG1148 HdrA Heterodisulfide r 97.9 1.3E-05 2.8E-10 74.5 4.8 38 52-89 123-161 (622)
361 PF00996 GDI: GDP dissociation 97.9 0.00038 8.3E-09 66.2 14.3 54 189-244 232-286 (438)
362 KOG4716 Thioredoxin reductase 97.9 0.00054 1.2E-08 61.1 14.1 56 51-106 17-73 (503)
363 COG1206 Gid NAD(FAD)-utilizing 97.8 0.00017 3.7E-09 63.9 9.9 34 53-86 3-36 (439)
364 PF06100 Strep_67kDa_ant: Stre 97.8 0.001 2.2E-08 63.2 15.6 39 53-91 2-44 (500)
365 KOG1238 Glucose dehydrogenase/ 97.8 0.0012 2.7E-08 64.4 15.7 36 51-86 55-91 (623)
366 PF00743 FMO-like: Flavin-bind 97.8 7.6E-05 1.7E-09 73.5 7.7 67 3-86 141-216 (531)
367 PF13738 Pyr_redox_3: Pyridine 97.7 4.1E-05 8.9E-10 65.9 5.1 67 3-86 129-200 (203)
368 PLN02568 polyamine oxidase 97.7 5.6E-05 1.2E-09 74.7 5.7 53 190-247 243-296 (539)
369 KOG0405 Pyridine nucleotide-di 97.7 0.0011 2.5E-08 59.3 12.6 36 51-86 18-53 (478)
370 PLN02676 polyamine oxidase 97.6 9.5E-05 2.1E-09 72.4 5.7 38 52-89 25-64 (487)
371 PRK12771 putative glutamate sy 97.5 0.001 2.3E-08 66.7 11.9 34 53-86 267-301 (564)
372 PLN02328 lysine-specific histo 97.5 0.00014 3E-09 74.3 5.5 38 52-89 237-275 (808)
373 TIGR03862 flavo_PP4765 unchara 97.5 0.001 2.3E-08 62.2 10.8 56 187-247 84-141 (376)
374 PLN02529 lysine-specific histo 97.5 0.00015 3.3E-09 73.6 5.5 38 52-89 159-197 (738)
375 KOG1276 Protoporphyrinogen oxi 97.5 0.00017 3.6E-09 66.4 5.1 36 51-86 9-46 (491)
376 KOG0404 Thioredoxin reductase 97.4 0.0008 1.7E-08 56.4 8.3 73 3-86 115-190 (322)
377 COG2303 BetA Choline dehydroge 97.4 0.00015 3.2E-09 72.0 4.3 36 51-86 5-40 (542)
378 COG0493 GltD NADPH-dependent g 97.3 0.00087 1.9E-08 64.4 7.9 34 53-86 123-156 (457)
379 KOG2755 Oxidoreductase [Genera 97.2 0.00041 8.8E-09 59.6 4.5 31 56-86 2-34 (334)
380 COG3486 IucD Lysine/ornithine 97.2 0.0034 7.3E-08 57.8 10.6 44 202-246 290-339 (436)
381 PLN03000 amine oxidase 97.2 0.00046 1E-08 70.7 5.5 38 52-89 183-221 (881)
382 PRK01438 murD UDP-N-acetylmura 97.2 0.0017 3.6E-08 64.0 9.2 34 53-86 16-49 (480)
383 PF01593 Amino_oxidase: Flavin 97.1 0.0028 6E-08 61.4 9.9 47 201-249 220-267 (450)
384 COG3634 AhpF Alkyl hydroperoxi 97.1 0.0031 6.6E-08 56.7 8.4 70 3-86 316-387 (520)
385 KOG3851 Sulfide:quinone oxidor 97.0 0.00024 5.2E-09 62.8 1.3 36 51-86 37-74 (446)
386 PLN02976 amine oxidase 97.0 0.0012 2.5E-08 70.6 5.9 39 51-89 691-730 (1713)
387 KOG2495 NADH-dehydrogenase (ub 97.0 0.0031 6.6E-08 58.4 7.6 116 51-251 53-174 (491)
388 TIGR03467 HpnE squalene-associ 96.9 0.11 2.3E-06 50.2 18.7 54 193-248 201-255 (419)
389 KOG0399 Glutamate synthase [Am 96.8 0.0043 9.3E-08 63.9 8.0 48 52-106 1784-1831(2142)
390 KOG1336 Monodehydroascorbate/f 96.8 0.0032 6.9E-08 59.2 6.6 43 201-247 138-181 (478)
391 COG3486 IucD Lysine/ornithine 96.7 0.011 2.4E-07 54.5 9.4 36 51-86 3-39 (436)
392 COG2072 TrkA Predicted flavopr 96.5 0.0045 9.7E-08 59.9 5.5 35 52-86 174-208 (443)
393 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.0066 1.4E-07 49.7 5.4 32 55-86 1-32 (157)
394 COG1251 NirB NAD(P)H-nitrite r 96.4 0.024 5.3E-07 56.3 9.8 46 201-250 70-116 (793)
395 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0064 1.4E-07 51.0 4.7 32 55-86 1-32 (180)
396 KOG1800 Ferredoxin/adrenodoxin 96.3 0.0066 1.4E-07 55.3 4.9 36 53-88 20-57 (468)
397 PF02558 ApbA: Ketopantoate re 96.0 0.011 2.4E-07 48.0 4.9 31 56-86 1-31 (151)
398 COG0569 TrkA K+ transport syst 96.0 0.0088 1.9E-07 52.1 4.4 32 55-86 2-33 (225)
399 PF03721 UDPG_MGDP_dh_N: UDP-g 96.0 0.0083 1.8E-07 50.5 3.9 32 55-86 2-33 (185)
400 KOG1346 Programmed cell death 95.6 0.032 6.9E-07 51.6 6.4 62 180-251 253-315 (659)
401 TIGR03385 CoA_CoA_reduc CoA-di 95.6 0.06 1.3E-06 52.2 8.8 46 201-248 55-104 (427)
402 PRK06129 3-hydroxyacyl-CoA deh 95.6 0.015 3.2E-07 53.6 4.3 32 55-86 4-35 (308)
403 KOG1439 RAB proteins geranylge 95.5 0.048 1E-06 50.3 7.1 60 189-251 232-292 (440)
404 PRK06719 precorrin-2 dehydroge 95.4 0.029 6.2E-07 45.8 5.0 33 53-85 13-45 (157)
405 TIGR02354 thiF_fam2 thiamine b 95.4 0.028 6.1E-07 47.9 4.9 34 53-86 21-55 (200)
406 PF01488 Shikimate_DH: Shikima 95.3 0.055 1.2E-06 43.0 6.3 35 52-86 11-46 (135)
407 PTZ00188 adrenodoxin reductase 95.3 0.51 1.1E-05 45.9 13.6 46 205-251 326-385 (506)
408 PRK07066 3-hydroxybutyryl-CoA 95.2 0.026 5.5E-07 51.9 4.5 33 54-86 8-40 (321)
409 TIGR01470 cysG_Nterm siroheme 95.2 0.035 7.6E-07 47.6 5.1 34 53-86 9-42 (205)
410 PF13241 NAD_binding_7: Putati 95.2 0.018 3.9E-07 43.3 2.9 35 52-86 6-40 (103)
411 PRK07819 3-hydroxybutyryl-CoA 95.2 0.028 6E-07 51.1 4.7 33 54-86 6-38 (286)
412 PRK06718 precorrin-2 dehydroge 95.2 0.038 8.2E-07 47.3 5.1 34 53-86 10-43 (202)
413 PRK06249 2-dehydropantoate 2-r 95.1 0.035 7.6E-07 51.3 5.2 34 53-86 5-38 (313)
414 PRK08293 3-hydroxybutyryl-CoA 95.1 0.029 6.4E-07 51.0 4.5 33 54-86 4-36 (287)
415 PRK09260 3-hydroxybutyryl-CoA 95.0 0.029 6.4E-07 51.1 4.3 32 55-86 3-34 (288)
416 TIGR02733 desat_CrtD C-3',4' d 95.0 0.091 2E-06 52.0 8.1 38 54-91 2-40 (492)
417 PRK02705 murD UDP-N-acetylmura 94.9 0.033 7.1E-07 54.6 4.8 32 55-86 2-33 (459)
418 PRK05708 2-dehydropantoate 2-r 94.9 0.038 8.1E-07 50.8 4.9 33 54-86 3-35 (305)
419 COG0446 HcaD Uncharacterized N 94.9 0.094 2E-06 50.4 7.9 44 202-250 65-109 (415)
420 PRK07530 3-hydroxybutyryl-CoA 94.8 0.048 1E-06 49.8 5.2 33 54-86 5-37 (292)
421 PF00899 ThiF: ThiF family; I 94.8 0.045 9.8E-07 43.5 4.4 34 53-86 2-36 (135)
422 COG0686 Ald Alanine dehydrogen 94.7 0.045 9.8E-07 48.7 4.4 34 53-86 168-201 (371)
423 PRK14106 murD UDP-N-acetylmura 94.7 0.046 1E-06 53.4 5.1 34 53-86 5-38 (450)
424 COG1004 Ugd Predicted UDP-gluc 94.7 0.041 8.9E-07 50.9 4.2 32 55-86 2-33 (414)
425 PRK15116 sulfur acceptor prote 94.6 0.059 1.3E-06 48.0 5.0 34 53-86 30-64 (268)
426 PRK08229 2-dehydropantoate 2-r 94.5 0.053 1.2E-06 50.8 4.8 33 54-86 3-35 (341)
427 PRK07688 thiamine/molybdopteri 94.5 0.06 1.3E-06 50.0 5.0 35 52-86 23-58 (339)
428 PRK06130 3-hydroxybutyryl-CoA 94.4 0.062 1.4E-06 49.6 5.0 34 53-86 4-37 (311)
429 PRK06035 3-hydroxyacyl-CoA deh 94.4 0.052 1.1E-06 49.6 4.3 33 54-86 4-36 (291)
430 cd01080 NAD_bind_m-THF_DH_Cycl 94.3 0.078 1.7E-06 43.7 4.8 35 52-86 43-78 (168)
431 PRK06522 2-dehydropantoate 2-r 94.3 0.059 1.3E-06 49.5 4.6 32 55-86 2-33 (304)
432 PRK12921 2-dehydropantoate 2-r 94.3 0.059 1.3E-06 49.6 4.6 30 55-84 2-31 (305)
433 PRK12475 thiamine/molybdopteri 94.3 0.07 1.5E-06 49.6 5.0 34 53-86 24-58 (338)
434 PF01262 AlaDh_PNT_C: Alanine 94.3 0.08 1.7E-06 43.9 4.9 34 53-86 20-53 (168)
435 PRK05808 3-hydroxybutyryl-CoA 94.3 0.055 1.2E-06 49.1 4.2 33 54-86 4-36 (282)
436 TIGR02356 adenyl_thiF thiazole 94.2 0.086 1.9E-06 45.1 5.1 35 52-86 20-55 (202)
437 PRK04148 hypothetical protein; 94.1 0.054 1.2E-06 42.4 3.3 33 53-86 17-49 (134)
438 PLN02545 3-hydroxybutyryl-CoA 94.1 0.087 1.9E-06 48.2 5.2 33 54-86 5-37 (295)
439 cd01487 E1_ThiF_like E1_ThiF_l 94.1 0.089 1.9E-06 43.8 4.8 32 55-86 1-33 (174)
440 cd01483 E1_enzyme_family Super 94.0 0.1 2.2E-06 42.0 4.8 32 55-86 1-33 (143)
441 KOG2304 3-hydroxyacyl-CoA dehy 94.0 0.063 1.4E-06 45.4 3.6 36 51-86 9-44 (298)
442 KOG2403 Succinate dehydrogenas 94.0 0.04 8.6E-07 52.9 2.6 49 53-101 55-103 (642)
443 PF02254 TrkA_N: TrkA-N domain 94.0 0.11 2.4E-06 39.9 4.8 31 56-86 1-31 (116)
444 cd05292 LDH_2 A subgroup of L- 93.7 0.098 2.1E-06 48.1 4.8 32 55-86 2-35 (308)
445 PRK08644 thiamine biosynthesis 93.7 0.12 2.6E-06 44.6 5.0 34 53-86 28-62 (212)
446 KOG1399 Flavin-containing mono 93.7 0.084 1.8E-06 50.8 4.4 32 53-84 186-217 (448)
447 COG4529 Uncharacterized protei 93.6 1.6 3.5E-05 41.8 12.5 35 52-86 195-231 (474)
448 PRK14618 NAD(P)H-dependent gly 93.6 0.12 2.7E-06 48.0 5.2 33 54-86 5-37 (328)
449 PRK11064 wecC UDP-N-acetyl-D-m 93.5 0.097 2.1E-06 50.3 4.6 33 54-86 4-36 (415)
450 TIGR01763 MalateDH_bact malate 93.5 0.11 2.4E-06 47.6 4.7 33 54-86 2-35 (305)
451 COG1748 LYS9 Saccharopine dehy 93.5 0.11 2.4E-06 48.6 4.7 33 54-86 2-35 (389)
452 TIGR00518 alaDH alanine dehydr 93.4 0.13 2.8E-06 48.6 5.0 34 53-86 167-200 (370)
453 PRK14619 NAD(P)H-dependent gly 93.3 0.15 3.2E-06 47.0 5.3 34 53-86 4-37 (308)
454 PRK12549 shikimate 5-dehydroge 93.2 0.24 5.1E-06 45.0 6.3 34 53-86 127-161 (284)
455 TIGR02355 moeB molybdopterin s 93.2 0.16 3.4E-06 44.8 4.9 34 53-86 24-58 (240)
456 TIGR03736 PRTRC_ThiF PRTRC sys 93.1 0.16 3.4E-06 44.6 4.8 35 52-86 10-55 (244)
457 KOG0399 Glutamate synthase [Am 93.1 0.045 9.7E-07 56.9 1.5 36 51-86 1922-1958(2142)
458 TIGR03026 NDP-sugDHase nucleot 93.0 0.11 2.4E-06 49.9 4.1 32 55-86 2-33 (411)
459 PRK14620 NAD(P)H-dependent gly 93.0 0.14 3E-06 47.7 4.6 32 55-86 2-33 (326)
460 PRK05690 molybdopterin biosynt 92.9 0.17 3.8E-06 44.7 4.9 35 52-86 31-66 (245)
461 COG1179 Dinucleotide-utilizing 92.9 0.14 3E-06 44.1 4.0 35 53-87 30-65 (263)
462 PRK07417 arogenate dehydrogena 92.9 0.14 3E-06 46.4 4.4 32 55-86 2-33 (279)
463 PRK07531 bifunctional 3-hydrox 92.9 0.15 3.3E-06 50.3 4.9 33 54-86 5-37 (495)
464 cd00401 AdoHcyase S-adenosyl-L 92.9 0.17 3.6E-06 48.2 4.9 34 53-86 202-235 (413)
465 PRK08328 hypothetical protein; 92.8 0.19 4.1E-06 44.1 4.9 34 53-86 27-61 (231)
466 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.8 0.13 2.8E-06 50.6 4.3 33 54-86 6-38 (503)
467 PF03446 NAD_binding_2: NAD bi 92.8 0.24 5.1E-06 40.8 5.3 33 54-86 2-34 (163)
468 PLN02576 protoporphyrinogen ox 92.7 5.5 0.00012 39.4 15.8 53 190-247 240-297 (496)
469 PTZ00082 L-lactate dehydrogena 92.7 0.21 4.5E-06 46.1 5.3 34 53-86 6-40 (321)
470 PF08491 SE: Squalene epoxidas 92.7 3.2 7E-05 37.0 12.3 149 236-407 2-165 (276)
471 cd01075 NAD_bind_Leu_Phe_Val_D 92.7 0.22 4.7E-06 42.6 5.0 34 53-86 28-61 (200)
472 COG0493 GltD NADPH-dependent g 92.7 0.3 6.5E-06 47.3 6.5 32 53-84 262-294 (457)
473 cd00757 ThiF_MoeB_HesA_family 92.6 0.21 4.5E-06 43.8 5.0 34 53-86 21-55 (228)
474 PF13478 XdhC_C: XdhC Rossmann 92.6 0.15 3.2E-06 40.4 3.6 31 56-86 1-31 (136)
475 PF03807 F420_oxidored: NADP o 92.6 0.37 7.9E-06 35.5 5.6 32 55-86 1-36 (96)
476 PRK00094 gpsA NAD(P)H-dependen 92.6 0.19 4.1E-06 46.7 4.9 32 55-86 3-34 (325)
477 cd05191 NAD_bind_amino_acid_DH 92.4 0.31 6.8E-06 35.1 4.9 32 53-84 23-55 (86)
478 cd05311 NAD_bind_2_malic_enz N 92.3 0.22 4.8E-06 43.4 4.7 34 53-86 25-61 (226)
479 cd01485 E1-1_like Ubiquitin ac 92.3 0.23 5E-06 42.3 4.7 34 53-86 19-53 (198)
480 PRK11730 fadB multifunctional 92.3 0.17 3.7E-06 52.3 4.6 33 54-86 314-346 (715)
481 COG1087 GalE UDP-glucose 4-epi 92.3 0.66 1.4E-05 41.5 7.5 33 55-87 2-35 (329)
482 cd00755 YgdL_like Family of ac 92.3 0.25 5.5E-06 43.1 4.9 34 53-86 11-45 (231)
483 PRK08268 3-hydroxy-acyl-CoA de 92.2 0.17 3.8E-06 49.9 4.3 33 54-86 8-40 (507)
484 PRK08223 hypothetical protein; 92.2 0.25 5.5E-06 44.3 4.9 34 53-86 27-61 (287)
485 PRK09424 pntA NAD(P) transhydr 92.1 0.2 4.4E-06 49.0 4.6 35 52-86 164-198 (509)
486 TIGR02437 FadB fatty oxidation 92.1 0.19 4.2E-06 51.8 4.6 34 53-86 313-346 (714)
487 COG0287 TyrA Prephenate dehydr 92.0 0.27 5.8E-06 44.3 4.9 34 53-86 3-36 (279)
488 cd01492 Aos1_SUMO Ubiquitin ac 92.0 0.25 5.5E-06 42.0 4.6 34 53-86 21-55 (197)
489 PF00670 AdoHcyase_NAD: S-aden 91.9 0.24 5.3E-06 40.2 4.0 34 53-86 23-56 (162)
490 TIGR01915 npdG NADPH-dependent 91.8 0.26 5.6E-06 42.9 4.6 32 55-86 2-34 (219)
491 COG1250 FadB 3-hydroxyacyl-CoA 91.8 0.24 5.1E-06 45.0 4.4 33 54-86 4-36 (307)
492 PLN02353 probable UDP-glucose 91.8 0.22 4.9E-06 48.5 4.5 33 54-86 2-36 (473)
493 cd05291 HicDH_like L-2-hydroxy 91.8 0.35 7.5E-06 44.5 5.6 32 55-86 2-35 (306)
494 PF00056 Ldh_1_N: lactate/mala 91.8 0.37 8E-06 38.6 5.0 32 55-86 2-36 (141)
495 PRK05562 precorrin-2 dehydroge 91.7 0.35 7.5E-06 41.8 5.1 35 52-86 24-58 (223)
496 COG1893 ApbA Ketopantoate redu 91.7 0.22 4.7E-06 45.7 4.1 32 55-86 2-33 (307)
497 COG5044 MRS6 RAB proteins gera 91.7 0.29 6.4E-06 44.8 4.7 37 53-89 6-43 (434)
498 KOG2755 Oxidoreductase [Genera 91.6 0.24 5.1E-06 43.2 3.9 70 3-86 95-165 (334)
499 cd01065 NAD_bind_Shikimate_DH 91.6 0.56 1.2E-05 38.1 6.2 34 53-86 19-53 (155)
500 cd01484 E1-2_like Ubiquitin ac 91.6 0.31 6.7E-06 42.6 4.7 32 55-86 1-33 (234)
No 1
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=1.7e-42 Score=332.08 Aligned_cols=354 Identities=19% Similarity=0.288 Sum_probs=271.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK-GA-AVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELN 128 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~-G~-~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (429)
...+||+|||||++|+++|++|+++ |. +|+|+||..++.++|++++|+++..+..+ ....+...+.++|+++.++++
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~-~~~~~~~~s~~l~~~l~~~~~ 106 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYP-ESAELYEHAMKLWEGLSQDLN 106 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCc-cccHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999995 95 89999999999999999999998876543 346778889999999998887
Q ss_pred CCCCcCeeeeeeeEEeecccccC-CCCCcc--ccCCCCCCCCCCCCCC---C----------CccC--ccccceeEehHH
Q 014198 129 GPDNYGYRALTTLSLTVTESQQS-GSKPSN--KANSLIPSWVDGPARS---P----------TTIG--STQTTAQVHPQL 190 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~---~----------~~~g--~~~~~~~~~~~~ 190 (429)
. ++.++.+|.+.++.++.+.+ +.+... +..+...+++++++.. + ...+ +.+..+.++|..
T Consensus 107 ~--~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~ 184 (407)
T TIGR01373 107 Y--NVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDA 184 (407)
T ss_pred C--CcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHH
Confidence 6 56788999999988766543 111111 1134455566554432 1 0112 246678999999
Q ss_pred HHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEE
Q 014198 191 FTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSII 268 (429)
Q Consensus 191 l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~ 268 (429)
+...|.+.+ ++.|++++.++ |++++..+++.+..|.+.++ .+.++.||+|+|+|+..+. .++..+++.+.+++++.
T Consensus 185 l~~~l~~~a-~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~~~~~~~~~ 262 (407)
T TIGR01373 185 VAWGYARGA-DRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIESHPLQALV 262 (407)
T ss_pred HHHHHHHHH-HHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcCcccceEEE
Confidence 999999999 88899999999 99997643566777888666 7999999999999998877 66777888888888776
Q ss_pred ecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcccc
Q 014198 269 LEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHL 348 (429)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l 348 (429)
.++.. +..+..+... ....|+.|..+|.+++++..+.. ...+...+.+.++.+++.+.+++|.+
T Consensus 263 ~~~~~--~~~~~~~~~~----------~~~~y~~p~~~g~~~ig~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~P~l 326 (407)
T TIGR01373 263 SEPLK--PIIDTVVMSN----------AVHFYVSQSDKGELVIGGGIDGY----NSYAQRGNLPTLEHVLAAILEMFPIL 326 (407)
T ss_pred ecCCC--CCcCCeEEeC----------CCceEEEEcCCceEEEecCCCCC----CccCcCCCHHHHHHHHHHHHHhCCCc
Confidence 65433 2222222211 12346667777877655433211 11223346678899999999999999
Q ss_pred CcccccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCCcccCCCCCCCCcCCCC
Q 014198 349 GEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARFGRPS 428 (429)
Q Consensus 349 ~~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~ 428 (429)
.+ .++.+.|+|.||+|+|+.|+||++| .+|+|+++|++|+|++++|.+|++++++|.++++ +.+++.|+|.||.++.
T Consensus 327 ~~-~~~~~~w~G~~~~t~D~~PiIg~~~-~~gl~~a~G~~g~G~~~ap~~G~~la~li~~~~~-~~~~~~f~~~Rf~~~~ 403 (407)
T TIGR01373 327 SR-VRMLRSWGGIVDVTPDGSPIIGKTP-LPNLYLNCGWGTGGFKATPASGTVFAHTLARGEP-HDINAPFTLDRFHSGR 403 (407)
T ss_pred CC-CCeEEEeccccccCCCCCceeCCCC-CCCeEEEeccCCcchhhchHHHHHHHHHHhCCCC-CCCCcccCHhHhccCC
Confidence 88 7888999999999999999999998 4999999999999999999999999999965544 5678999999998654
No 2
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.9e-41 Score=285.38 Aligned_cols=359 Identities=41% Similarity=0.706 Sum_probs=307.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHH
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKG------AAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAE 125 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G------~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (429)
...+|+|||||++|+.+||+|++.+ ..|+|+|+..+.+++|+.++|++. .|+.+.....++..+++++++|.+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa-~wc~~s~~~~La~lsfkLh~~Lsd 87 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA-KWCQPSIIQPLATLSFKLHEELSD 87 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhH-hhhCCcccchhhHHHHHHHHHHHH
Confidence 3578999999999999999999987 789999999999999999999999 799999999999999999999999
Q ss_pred HhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCC-CCccCccccceeEehHHHHHHHHHHHHhhcC
Q 014198 126 ELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARS-PTTIGSTQTTAQVHPQLFTKTLLNKAVNDYG 204 (429)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~G 204 (429)
++.....|+|+....+.+..+.++.. ..+ ...+.+|+.++..+ ...+|.....++++|..+++.++..+.+..|
T Consensus 88 eydGvnnwgYRaltTws~ka~~en~~----p~k-~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~ 162 (380)
T KOG2852|consen 88 EYDGVNNWGYRALTTWSCKADWENTN----PAK-VPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGG 162 (380)
T ss_pred hhcCcccccceeeeEEEEEeecccCC----ccc-CCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcC
Confidence 99888899999998888777644332 111 45667888887766 4557888899999999999999999955556
Q ss_pred cEEEEceEEEEEEccCCcEEEEEEe---C-CeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCCCCCc
Q 014198 205 LEVVIGKVERVGVGEGGRVESVMIE---G-GRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPH 280 (429)
Q Consensus 205 v~v~~~~v~~i~~~~~g~v~~v~~~---~-g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (429)
|+++++.|.++..+ .+++..+-.. + ......+.+|++.|+|+..++ ...++...+.+.+.+++... ++.++
T Consensus 163 V~lv~Gkv~ev~dE-k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskll---p~~rIsglrihsI~l~~~e~-~v~~~ 237 (380)
T KOG2852|consen 163 VKLVFGKVKEVSDE-KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLL---PFTRISGLRIHSITLSPGEK-PVGPS 237 (380)
T ss_pred eEEEEeeeEEeecc-cccccccchhhhcCceEEeeeeEEEEecCCCchhhc---cccccceeeeeeEEecCCCC-CCCCc
Confidence 99999999888744 6776665443 1 345678999999999999998 44788888999999988773 58888
Q ss_pred eeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeee
Q 014198 281 ALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQE-VPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQA 359 (429)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~ 359 (429)
.++......++- ....+..|+|+|++++++|.++... .|.+.++...+++.++.|.+.+..+.+.+.+ ..+.....
T Consensus 238 avf~~l~~~~g~--ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npeki~~Lk~~a~~v~s~l~k-s~v~~~qa 314 (380)
T KOG2852|consen 238 AVFCELNTMDGL--EICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEKIIELKEMADLVSSELTK-SNVLDAQA 314 (380)
T ss_pred eEEEEEEeCCCc--cccCcceeecCCceEEEecCCCccccCCcccccceeCHHHHHHHHHHHHHhhhhhcc-chhhhhhh
Confidence 999887765541 2455679999999999999887655 6777888899999999999999999999988 78888999
Q ss_pred eecccCCC-CCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCCcccCCCCCCCCcCC
Q 014198 360 CFLPCTDD-GVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARFGR 426 (429)
Q Consensus 360 g~r~~t~d-~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~ 426 (429)
|+.|.+.+ +.|+||+++ .++|+++||+.+|++.+|+.|..+|++|++|+....+.++|+|+||.+
T Consensus 315 cfLP~sn~tg~PvIget~--sg~yVaagHscWGItnaPaTG~~mAEllldgeaTSanid~f~p~~~~~ 380 (380)
T KOG2852|consen 315 CFLPTSNITGIPVIGETK--SGVYVAAGHSCWGITNAPATGKCMAELLLDGEATSANIDPFDPNLGEK 380 (380)
T ss_pred ccccccCCCCCceEeecC--CceEEeecccccceecCcchhHHHHHHHhccceeeeecCccCccccCC
Confidence 99999877 999999998 699999999999999999999999999999999999999999999864
No 3
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=100.00 E-value=2.1e-41 Score=325.98 Aligned_cols=346 Identities=26% Similarity=0.330 Sum_probs=261.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCC--------------------------
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGG-------------------------- 107 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~-------------------------- 107 (429)
||+|||||++|+++|++|+++|++|+|+|+.. ++.++|++++|++++.+..+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG 81 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCCC
Confidence 79999999999999999999999999999996 789999999999988653221
Q ss_pred -------------------------cchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccC-CCCCccc--c
Q 014198 108 -------------------------PLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQS-GSKPSNK--A 159 (429)
Q Consensus 108 -------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~ 159 (429)
.+..+..++.++|+++.++.+. ++.++..|.+.+..++.+.+ +.+.... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~--~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~ 159 (416)
T PRK00711 82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGI--QYEGRQGGTLQLFRTQQQLDAAAKDIAVLEE 159 (416)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--ccccccCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 1234456678888888887776 66788899999988766543 2221111 1
Q ss_pred CCCCCCCCCCCCCC----------CCccC--ccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEE
Q 014198 160 NSLIPSWVDGPARS----------PTTIG--STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESV 226 (429)
Q Consensus 160 ~~~~~~~~~~~~~~----------~~~~g--~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v 226 (429)
.+..+++++..... ....+ +.+.+++++|..+++.|.+.+ ++.|+++++++ |++++.+ ++.+..|
T Consensus 160 ~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~-~~~G~~i~~~~~V~~i~~~-~~~~~~v 237 (416)
T PRK00711 160 AGVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMA-EQLGVKFRFNTPVDGLLVE-GGRITGV 237 (416)
T ss_pred cCCCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHH-HHCCCEEEcCCEEEEEEec-CCEEEEE
Confidence 34445555544322 11112 367788999999999999999 88899999999 9999887 5666667
Q ss_pred EEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecC
Q 014198 227 MIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRP 305 (429)
Q Consensus 227 ~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (429)
.+. +.+++||.||+|+|+|+..+. .++...|+.+.+++.+.++.... ...+...+.+ ....+.+++.
T Consensus 238 ~t~-~~~~~a~~VV~a~G~~~~~l~~~~g~~~pi~p~rg~~~~~~~~~~-~~~p~~~~~~----------~~~~~~~~~~ 305 (416)
T PRK00711 238 QTG-GGVITADAYVVALGSYSTALLKPLGVDIPVYPLKGYSLTVPITDE-DRAPVSTVLD----------ETYKIAITRF 305 (416)
T ss_pred EeC-CcEEeCCEEEECCCcchHHHHHHhCCCcccCCccceEEEEecCCC-CCCCceeEEe----------cccCEEEeec
Confidence 775 458999999999999999887 66777889999998876643321 1111111111 1112355666
Q ss_pred CCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeeeeecccCCCCCceeccCCCCCcEEEEe
Q 014198 306 TGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGT 385 (429)
Q Consensus 306 ~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~ 385 (429)
+|.+++++..+.. ..+...+.+..+.+.+.+.+++|.+.+ ..+.+.|+|+|++|+|+.|+||++| .+|+|+++
T Consensus 306 ~~~~~iG~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~~~~~w~G~r~~t~D~~PiIG~~~-~~gl~~a~ 378 (416)
T PRK00711 306 DDRIRVGGMAEIV-----GFDLRLDPARRETLEMVVRDLFPGGGD-LSQATFWTGLRPMTPDGTPIVGATR-YKNLWLNT 378 (416)
T ss_pred CCceEEEEEEEec-----CCCCCCCHHHHHHHHHHHHHHCCCccc-ccccceeeccCCCCCCCCCEeCCcC-CCCEEEec
Confidence 7777655433221 123345677888999999999999987 7788999999999999999999997 49999999
Q ss_pred cCCCccchhhHHHHHHHHHHHhcCCCCcccCCCCCCCCc
Q 014198 386 GHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARF 424 (429)
Q Consensus 386 G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~ 424 (429)
|++|+||+++|++|++++++|+ +.+.+.|++.|+|+||
T Consensus 379 G~~g~G~~~ap~~g~~la~li~-g~~~~~~~~~f~~~Rf 416 (416)
T PRK00711 379 GHGTLGWTMACGSGQLLADLIS-GRKPAIDADDLSVARY 416 (416)
T ss_pred CCchhhhhhhhhHHHHHHHHHc-CCCCCCCccccCccCC
Confidence 9999999999999999999995 5556789999999998
No 4
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=1.3e-39 Score=309.92 Aligned_cols=356 Identities=21% Similarity=0.246 Sum_probs=253.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCc--cccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVA--CAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~--~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
+||+|||||++|+++|++|+++|++|+|||+...+ .++|..+++++...+. ...+..+..++.++|+++.++.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~-~~~~~~l~~~s~~~~~~l~~~~~~-- 77 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYP-EDFYTPMMLECYQLWAQLEKEAGT-- 77 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccC-chhHhHHHHHHHHHHHHHHHHhCC--
Confidence 58999999999999999999999999999998743 3445555666655432 334678889999999999887765
Q ss_pred CcCeeeeeeeEEeecccccCCCCCccc--cCCCCCCCCCCCCCC---C-----Ccc-C-ccccceeEehHHHHHHHHHHH
Q 014198 132 NYGYRALTTLSLTVTESQQSGSKPSNK--ANSLIPSWVDGPARS---P-----TTI-G-STQTTAQVHPQLFTKTLLNKA 199 (429)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~-----~~~-g-~~~~~~~~~~~~l~~~l~~~~ 199 (429)
++ +...|.+.+...+. ..+.+.... ..+...++++.++.. + ... + +.+.+++++|..+++.|.+.+
T Consensus 78 ~~-~~~~G~l~~~~~~~-~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~ 155 (380)
T TIGR01377 78 KL-HRQTGLLLLGPKEN-QFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELA 155 (380)
T ss_pred ee-EeecCeEEEcCCCc-HHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHH
Confidence 23 45678887765443 111111111 123334455544321 1 111 2 357889999999999999999
Q ss_pred HhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEecCCCCCCC
Q 014198 200 VNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILEPKEADAI 277 (429)
Q Consensus 200 ~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (429)
++.|++++.++ |+++..+ ++.+ .|.+.++ ++.+|.||+|+|+|+..+. .++..+|+.+.++++..+........
T Consensus 156 -~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 231 (380)
T TIGR01377 156 -EAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIPLQPLRINVCYWREKEPGSY 231 (380)
T ss_pred -HHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCCceEEEEEEEEEecCCcccc
Confidence 88899999999 9999876 5544 4666554 7999999999999998887 66778889899988777654331011
Q ss_pred ---CCceeEeeeccCCCCCCCCCCCceEecCCC-cEEEeccCCCCCC-C-CCCCCCCCCHHHHHHHHHHHHHhccccCcc
Q 014198 278 ---TPHALFLSYYPAQGEGGKPMDPEVYPRPTG-EVYLCGMSSEQEV-P-DDPETVSGDPASIQVLKRVARTVSSHLGEE 351 (429)
Q Consensus 278 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~g~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~ 351 (429)
...+.+..... ....|++|..++ .+++++....... + ....+...+...++.+.+.+.+++|.+..
T Consensus 232 ~~~~~~p~~~~~~~-------~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~- 303 (380)
T TIGR01377 232 GVSQAFPCFLVLGL-------NPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNG- 303 (380)
T ss_pred CccCCCCEEEEeCC-------CCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCC-
Confidence 01222222110 112345565432 3444432221110 0 11122346677889999999999999986
Q ss_pred cccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCCcccCCCCCCCCcCCCC
Q 014198 352 AQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARFGRPS 428 (429)
Q Consensus 352 ~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~ 428 (429)
.. ...|.|+++.|+|+.|+||++|..+|+|+++|++|+||+++|.+|++++++|.++ .++.|++.|+|+||..++
T Consensus 304 ~~-~~~~~~~~~~t~D~~piIg~~p~~~~l~va~G~~g~G~~~~p~~g~~la~li~~~-~~~~~~~~f~~~Rf~~~~ 378 (380)
T TIGR01377 304 EP-KKGEVCMYTNTPDEHFVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAELAMKL-KPSYDLAIFSLNRFALKK 378 (380)
T ss_pred Cc-ceeeEEEeccCCCCCeeeecCCCCCCEEEEecCCccceeccHHHHHHHHHHHhcC-CCCCCccccChhhcccCC
Confidence 44 4678999999999999999999999999999999999999999999999999654 457889999999998876
No 5
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=100.00 E-value=1.5e-39 Score=309.03 Aligned_cols=354 Identities=21% Similarity=0.286 Sum_probs=254.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc--ccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC--AASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~--~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
++||+|||||++|+++|++|+++|++|+||||+..+. ++|..+.++++..+.....+.++..++.++|+++.++.+.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~- 81 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE- 81 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC-
Confidence 5899999999999999999999999999999998543 5566666777765554556678999999999999887765
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccc--cCCCCCCCCCCCCCC--------C-CccC-ccccceeEehHHHHHHHHHH
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNK--ANSLIPSWVDGPARS--------P-TTIG-STQTTAQVHPQLFTKTLLNK 198 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~-~~~g-~~~~~~~~~~~~l~~~l~~~ 198 (429)
++ +..+|.+.+..+.... ..+.... ..+...++++.+... . ...+ +.+.+++++|.+++..+.+.
T Consensus 82 -~~-~~~~G~l~~~~~~~~~-~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~ 158 (376)
T PRK11259 82 -PL-FVRTGVLNLGPADSDF-LANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRL 158 (376)
T ss_pred -cc-EEEECCEEEcCCCCHH-HHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHH
Confidence 33 7778888776443211 1111111 123334445443321 1 1112 45778999999999999999
Q ss_pred HHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCC-C
Q 014198 199 AVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEAD-A 276 (429)
Q Consensus 199 ~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 276 (429)
+ .+.|+++++++ |+++..+ ++.+ .|++.++ .+++|.||+|+|+|+..+... ..+|+.+.+++++.+++.... .
T Consensus 159 ~-~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~ 233 (376)
T PRK11259 159 A-REAGAELLFNEPVTAIEAD-GDGV-TVTTADG-TYEAKKLVVSAGAWVKDLLPP-LELPLTPVRQVLAWFQADGRYSE 233 (376)
T ss_pred H-HHCCCEEECCCEEEEEEee-CCeE-EEEeCCC-EEEeeEEEEecCcchhhhccc-ccCCceEEEEEEEEEecCCccCC
Confidence 9 78899999999 9999886 4443 5777655 799999999999999988732 457888999999888754310 1
Q ss_pred CCCceeEeeeccCCCCCCCCCCCceEecCCCc-EEEeccCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHhccccCcccc
Q 014198 277 ITPHALFLSYYPAQGEGGKPMDPEVYPRPTGE-VYLCGMSSEQE--VPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQ 353 (429)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~ 353 (429)
....+.+... ..++ ...|+.|+.++. +++++...... .+...+.....++..+.+++.+.+++|.+.+
T Consensus 234 ~~~~p~~~~~-~~~~-----~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--- 304 (376)
T PRK11259 234 PNRFPAFIWE-VPDG-----DQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP--- 304 (376)
T ss_pred ccCCCEEEEe-cCCC-----ceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc---
Confidence 1112222221 1111 124555776777 76544332110 1111111222356789999999999997754
Q ss_pred cceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCCcccCCCCCCCCcC
Q 014198 354 VKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARFG 425 (429)
Q Consensus 354 ~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~ 425 (429)
+.+.|.|+|++|+|+.|+||++|+.+|+|+++|++|+|++++|.+|+.++++|++++ +..|++.|+|+||.
T Consensus 305 ~~~~~~g~~~~t~D~~P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~li~~~~-~~~~~~~~~~~Rf~ 375 (376)
T PRK11259 305 CLRGAACTYTNTPDEHFIIDTLPGHPNVLVASGCSGHGFKFASVLGEILADLAQDGT-SDFDLSPFSLSRFA 375 (376)
T ss_pred cccceEEecccCCCCCceeecCCCCCCEEEEecccchhhhccHHHHHHHHHHHhcCC-CCCCcCccCccccc
Confidence 778899999999999999999999999999999999999999999999999996554 57889999999995
No 6
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=100.00 E-value=3.2e-39 Score=325.46 Aligned_cols=346 Identities=21% Similarity=0.262 Sum_probs=255.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCc-chhhhH----HHHHHHHHHHHH
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGP-LSSLAR----ASFNLHRSLAEE 126 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~-~~~l~~----~~~~~~~~~~~~ 126 (429)
.+||+|||||++|+++|++|+++|++|+|+|++. ++.++|++++|++++.+..... ..++.. .+.++|+++. +
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~-~ 338 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALP-A 338 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-h
Confidence 4799999999999999999999999999999996 8899999999999986543322 334433 4567777766 3
Q ss_pred hCCCCCcCeeeeeeeEEeecccccC-CCCCcccc-CCCCCCCCCCCCCC-----CCc-cC-ccccceeEehHHHHHHHHH
Q 014198 127 LNGPDNYGYRALTTLSLTVTESQQS-GSKPSNKA-NSLIPSWVDGPARS-----PTT-IG-STQTTAQVHPQLFTKTLLN 197 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~-----~~~-~g-~~~~~~~~~~~~l~~~l~~ 197 (429)
.+. ++.+..+|.+.+..++.+.+ ..+..... ....+++++.++.. ... .+ +.+.+++++|..++++|.+
T Consensus 339 ~~~--~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~ 416 (662)
T PRK01747 339 AGV--AFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLA 416 (662)
T ss_pred cCC--CCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHH
Confidence 333 45677889998887665433 11111110 11223444443221 111 12 4678899999999999999
Q ss_pred HHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCC
Q 014198 198 KAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADA 276 (429)
Q Consensus 198 ~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (429)
.+ .+ |+++++++ |+++..+ ++.+. |.+.++..++||.||+|+|+|+..+... ..+|+.+.++|++.++... .
T Consensus 417 ~a-~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s~~l~~~-~~lpl~p~RGqv~~~~~~~--~ 489 (662)
T PRK01747 417 LA-GQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDAARFAQT-AHLPLYSVRGQVSHLPTTP--A 489 (662)
T ss_pred hc-cc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCccccccc-cCCCcccccceEEeecCCc--c
Confidence 99 77 99999999 9999876 55544 7777776778999999999999887632 3678999999998877543 2
Q ss_pred CCC-ceeEeeeccCCCCCCCCCCCceEe-cCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcccc-----C
Q 014198 277 ITP-HALFLSYYPAQGEGGKPMDPEVYP-RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHL-----G 349 (429)
Q Consensus 277 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l-----~ 349 (429)
... ..++. ...|+.| ..+|.++ +|++.+.+ ..+...+.+..+.+++.+.+++|.+ .
T Consensus 490 ~~~~~~~~~------------~~~Y~~p~~~~g~~~-iGat~~~~----~~~~~~~~~~~~~~~~~l~~~~P~l~~~~~~ 552 (662)
T PRK01747 490 LSALKQVLC------------YDGYLTPQPANGTHC-IGASYDRD----DTDTAFREADHQENLERLAECLPQALWAKEV 552 (662)
T ss_pred ccccCceeE------------CCceeCCCCCCCceE-eCcccCCC----CCCCCCCHHHHHHHHHHHHHhCCCchhhhcc
Confidence 111 11111 1246777 5677664 56665432 2334567777888999999999976 3
Q ss_pred cccccceeeeeecccCCCCCceecc----------------------CCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 350 EEAQVKAEQACFLPCTDDGVPVIGE----------------------LPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 350 ~~~~~~~~~~g~r~~t~d~~p~ig~----------------------~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
+ ..+...|+|+|+.|+|+.|+||+ +|..+|+|+++|++++|+++||++|++++++|
T Consensus 553 ~-~~~~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~G~gs~Gl~~ap~~a~~lA~li- 630 (662)
T PRK01747 553 D-VSALQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAGALGSRGLCSAPLGAELLASQI- 630 (662)
T ss_pred C-ccccCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEecccccHHHHHHHHHHHHHHHH-
Confidence 4 56789999999999999999999 55678999999999999999999999999999
Q ss_pred cCCCCccc---CCCCCCCCcCCC
Q 014198 408 DGCASIVD---LSRFSPARFGRP 427 (429)
Q Consensus 408 ~g~~~~~~---~~~~~~~R~~~~ 427 (429)
.|++.+.+ ++.|+|+||..+
T Consensus 631 ~g~~~p~~~~~~~~~~p~Rf~~r 653 (662)
T PRK01747 631 EGEPLPLERDLLAALHPNRFWVR 653 (662)
T ss_pred hCCCCCCCHHHHHhhChHHHHHH
Confidence 46665543 679999999765
No 7
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=3.8e-39 Score=304.69 Aligned_cols=335 Identities=30% Similarity=0.462 Sum_probs=250.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeecc--CCCCcchhhhHHHHHHHHHHHHHhCCCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDW--CDGGPLSSLARASFNLHRSLAEELNGPDN 132 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 132 (429)
||+|||||++|+++|++|+++|++|+|||++.+++++|++++|++++.. .....+.++..++.+.|+++.++.+. .
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~ 78 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGI--P 78 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTS--S
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCc--c
Confidence 7999999999999999999999999999999999999999999999863 34446788999999999999888877 5
Q ss_pred cCeeeeeeeEEeecccccC-CCCCcccc--CCCCCCCCCCCCCC-------C-Ccc-CccccceeEehHHHHHHHHHHHH
Q 014198 133 YGYRALTTLSLTVTESQQS-GSKPSNKA--NSLIPSWVDGPARS-------P-TTI-GSTQTTAQVHPQLFTKTLLNKAV 200 (429)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~-------~-~~~-g~~~~~~~~~~~~l~~~l~~~~~ 200 (429)
+.++.+|.+.+..++...+ +.+....+ .+...++++.+... + ... .+.+.++++++.+++++|.+.+
T Consensus 79 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~- 157 (358)
T PF01266_consen 79 VGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEA- 157 (358)
T ss_dssp CEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHH-
T ss_pred cccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHH-
Confidence 6677889999986655443 11111110 22233333332221 1 011 1468889999999999999999
Q ss_pred hhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEecCCCCCCCC
Q 014198 201 NDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILEPKEADAIT 278 (429)
Q Consensus 201 ~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (429)
++.|+++++++ |++|..+ ++++.+|++.+|. ++||.||+|+|+|+..++ .++...++.+.+++++.++... ...
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 233 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDLPLRPVRGQVLVLEPPE--SPL 233 (358)
T ss_dssp HHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSSTEEEEEEEEEEEEGCC--SGS
T ss_pred HHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccceeeeecccccccccccceEEEEEccCC--ccc
Confidence 88899999999 9999998 7888889998776 999999999999999987 6667778999999999988655 222
Q ss_pred Ccee-EeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCC-CCCCCC-----CCCCCCHHHHHHHHHHHHHhccccCcc
Q 014198 279 PHAL-FLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQ-EVPDDP-----ETVSGDPASIQVLKRVARTVSSHLGEE 351 (429)
Q Consensus 279 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~-~~~~~~-----~~~~~~~~~~~~l~~~~~~~~p~l~~~ 351 (429)
...+ +......+ ....+++|+. |.+++ |..+.. ...... .+...+.+ ++.+++.+.+++|.+.+
T Consensus 234 ~~~~~~~~~~~~~-----~~~~~~~p~~-g~~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~- 304 (358)
T PF01266_consen 234 APAILFPPVIFGP-----SDGVYIRPRP-GGVLI-GTADGNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLLPGLGD- 304 (358)
T ss_dssp SSEEEEEEECESS-----CTEEEEEEET-TEEEE-EESECEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHSGGGGG-
T ss_pred ccccccccccccc-----cccceecccc-ccccc-ccccccccccccccccccccccccHH-HHHhHHHHHHHHHHhhh-
Confidence 2222 22211111 1234566777 66654 422211 000000 00112223 67899999999999998
Q ss_pred cccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHH
Q 014198 352 AQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAEL 405 (429)
Q Consensus 352 ~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~ 405 (429)
.++.+.|+|+|+.++|+.|++|++|..+|+|+++|++++|++++|++|+++|++
T Consensus 305 ~~v~~~~~g~r~~t~d~~p~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 305 AEVVRSWAGIRPFTPDGRPIIGELPGSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp SEEEEEEEEEEEEETTSECEEEEESSEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred ccccccccceeeeccCCCeeeeecCCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999999999999999985
No 8
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=100.00 E-value=6.6e-37 Score=293.70 Aligned_cols=335 Identities=21% Similarity=0.234 Sum_probs=242.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCC--------------------------
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDG-------------------------- 106 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~-------------------------- 106 (429)
+||+|||||++|+++|++|+++|++|+||||+. ++.++|++++|++.+.....
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPK 81 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecCC
Confidence 599999999999999999999999999999998 78999999999997632110
Q ss_pred -----------------------CcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccC-CCCCcccc--C
Q 014198 107 -----------------------GPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQS-GSKPSNKA--N 160 (429)
Q Consensus 107 -----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~ 160 (429)
....++..++.++|.++.++.+. ++.+.+.|.+.+..++.+.+ +.+....+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~--~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~ 159 (410)
T PRK12409 82 PSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGI--DFDLERRGILHIYHDKAGFDHAKRVNALLAEG 159 (410)
T ss_pred CCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--cceeecCcEEEEECCHHHHHhccHHHHHHHhc
Confidence 01245677788888898888776 67788999999987766554 22221111 2
Q ss_pred CCCCCCCCCCCCC-------CCccC--ccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC
Q 014198 161 SLIPSWVDGPARS-------PTTIG--STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG 230 (429)
Q Consensus 161 ~~~~~~~~~~~~~-------~~~~g--~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~ 230 (429)
+...+++++++.. ....+ +.+.++++++.+++..|.+.+ ++.|+++++++ |++++.+ ++.+. +.+.+
T Consensus 160 g~~~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a-~~~G~~i~~~~~V~~i~~~-~~~~~-v~~~~ 236 (410)
T PRK12409 160 GLERRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAAC-ARLGVQFRYGQEVTSIKTD-GGGVV-LTVQP 236 (410)
T ss_pred CCCeEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHH-HhCCCEEEcCCEEEEEEEe-CCEEE-EEEEc
Confidence 3344555544332 11122 356778899999999999999 88899999999 9999876 55443 43333
Q ss_pred C-----eEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEe-
Q 014198 231 G-----RVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYP- 303 (429)
Q Consensus 231 g-----~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 303 (429)
+ .+++||.||+|+|+|+..+. .++...++.+.+++++.++..........+.+... + ...++++
T Consensus 237 ~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~~~i~p~~g~~~~~~~~~~~~~~~~p~~~~~---~------~~~~~~~~ 307 (410)
T PRK12409 237 SAEHPSRTLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSITVNLDDEASRAAAPWVSLL---D------DSAKIVTS 307 (410)
T ss_pred CCCCccceEecCEEEECCCcChHHHHHHhCCCCccccCCceEEEeecCCccccccCCceeee---e------cCCcEEEE
Confidence 2 37999999999999999888 66777889999998877654321010001111110 0 1123333
Q ss_pred c-CCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeeeeecccCCCCCceeccCCCCCcEE
Q 014198 304 R-PTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCY 382 (429)
Q Consensus 304 ~-~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~ 382 (429)
+ .++.++++| +.+.+ ..+...+.+.++.+.+.+.+++|.+.+ ..+. .|+|.|++++|+.|+||+.+ .+|+|
T Consensus 308 ~~~~~~~~igg-~~~~~----~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~~~-~w~G~r~~t~D~~PiiG~~~-~~~l~ 379 (410)
T PRK12409 308 RLGADRFRVAG-TAEFN----GYNRDIRADRIRPLVDWVRRNFPDVST-RRVV-PWAGLRPMMPNMMPRVGRGR-RPGVF 379 (410)
T ss_pred ecCCCcEEEEE-EEEec----CCCCCCCHHHHHHHHHHHHHhCCCCCc-cccc-eecccCCCCCCCCCeeCCCC-CCCEE
Confidence 3 355665544 43321 123345667889999999999999987 6655 79999999999999999975 69999
Q ss_pred EEecCCCccchhhHHHHHHHHHHHhcCC
Q 014198 383 VGTGHNCWGILNGPATGAALAELVMDGC 410 (429)
Q Consensus 383 ~~~G~~~~G~~~a~~~a~~la~~i~~g~ 410 (429)
+++|++++|+++||++|++++++|.++.
T Consensus 380 ~~~G~~~~G~~~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 380 YNTGHGHLGWTLSAATADLVAQVVAQKL 407 (410)
T ss_pred EecCCcccchhhcccHHHHHHHHHcCCC
Confidence 9999999999999999999999995443
No 9
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=100.00 E-value=1e-36 Score=295.11 Aligned_cols=339 Identities=20% Similarity=0.258 Sum_probs=233.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCCCccccccccCCeeeeccCC----------CCcchhhhHHH--
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSSVACAASGKAGGFLALDWCD----------GGPLSSLARAS-- 116 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~~~~~~s~~~~g~~~~~~~~----------~~~~~~l~~~~-- 116 (429)
+.++||+|||||++|+++|++|+++ |.+|+|||++.++.|+|++++|++.. +.. ......+...+
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~-~~~~~~~~~~~~g~~~~~~l~~~~~~ 100 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLT-WSTKFFTLKRLFGEAEAARLVKASEQ 100 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccc-cccCHHHHHHhhCHHHHHHHHHHHHH
Confidence 4568999999999999999999998 89999999999999999999997754 211 11122333333
Q ss_pred -HHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccC-CCCCcccc--CCCC-CCCCCCCCCC-----CCccC--ccccce
Q 014198 117 -FNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQS-GSKPSNKA--NSLI-PSWVDGPARS-----PTTIG--STQTTA 184 (429)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~~~~~~~~~-----~~~~g--~~~~~~ 184 (429)
++.+.++.++.+. ++.+...|.+.+..++.+.. +.+..+.+ .+.. +++++.++.. ....+ +.+.++
T Consensus 101 ~~~~~~~l~~~~~i--~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g 178 (460)
T TIGR03329 101 AVLEIAAFCEQHNI--DAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAA 178 (460)
T ss_pred HHHHHHHHHHHhCC--CCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCe
Confidence 3444455555655 67888899999887765543 11111111 2222 3566654432 11112 467889
Q ss_pred eEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccccc
Q 014198 185 QVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVSGL 262 (429)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~ 262 (429)
++||.++++.|.+.+ ++.|++|++++ |++++.. +. +.|++.+| .++||.||+|+|+|+..+. .++. .+.+.
T Consensus 179 ~i~P~~l~~~L~~~a-~~~Gv~i~~~t~V~~i~~~-~~--~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~~--~~~p~ 251 (460)
T TIGR03329 179 SVQPGLLVRGLRRVA-LELGVEIHENTPMTGLEEG-QP--AVVRTPDG-QVTADKVVLALNAWMASHFPQFER--SIAIV 251 (460)
T ss_pred EECHHHHHHHHHHHH-HHcCCEEECCCeEEEEeeC-Cc--eEEEeCCc-EEECCEEEEcccccccccChhhcC--eEEEe
Confidence 999999999999999 88999999999 9999753 32 45777655 7999999999999998776 4332 33445
Q ss_pred eeeEEEecCCCCCCC-----CCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCC-CCCCCCHHHHHH
Q 014198 263 KAHSIILEPKEADAI-----TPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDP-ETVSGDPASIQV 336 (429)
Q Consensus 263 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~-~~~~~~~~~~~~ 336 (429)
..+++.+++... .. .....+.+ .+ ....|+-+.++|++++++........... ..........+.
T Consensus 252 ~~~~~~t~pl~~-~~~~~~~~~~~~~~d-----~~---~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (460)
T TIGR03329 252 SSDMVITEPAPD-LLAATGLDHGTSVLD-----SR---IFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEAL 322 (460)
T ss_pred ccceEecCCCcH-HHHhhcCCCCceEec-----ch---hhhhheeECCCCcEEEcCCccccccCcccccccCCchHHHHH
Confidence 566665554320 11 01111111 10 11124446678887654432211100000 001122334678
Q ss_pred HHHHHHHhccccCcccccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcC
Q 014198 337 LKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDG 409 (429)
Q Consensus 337 l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g 409 (429)
+.+.+.++||.+.+ .++.+.|+|++++|+|+.|+||+++..+|+|+++|++|+|+++++++|++++++|+++
T Consensus 323 l~~~~~~~fP~L~~-~~i~~~W~G~~~~t~D~~P~iG~~~~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~ 394 (460)
T TIGR03329 323 LTRSLRKFFPALAE-VPIAASWNGPSDRSVTGLPFFGRLNGQPNVFYGFGYSGNGVAPSRMGGQILSSLVLGL 394 (460)
T ss_pred HHHHHHHhCCCcCC-CeeeEEEeceeCCCCCCCceeeeecCCCCEEEEeCcCCCChhHHHHHHHHHHHHhcCC
Confidence 99999999999988 8899999999999999999999998889999999999999999999999999999543
No 10
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-36 Score=288.15 Aligned_cols=354 Identities=31% Similarity=0.479 Sum_probs=257.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCC---cchhhhHHHHHHHHHHHHHh
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGG---PLSSLARASFNLHRSLAEEL 127 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~ 127 (429)
..++||+|||||++|+++|++|+++|.+|+++|+..++.++|+++++.+...+.... ....+...+..+|+.+....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEEL 81 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999888999999888888776644 56778888889999988877
Q ss_pred CCCCCcCeeeeeeeEEeeccccc-----C-CCCCccccCCCCCCCCCCCCC---C-----CCccC--ccccceeEehHHH
Q 014198 128 NGPDNYGYRALTTLSLTVTESQQ-----S-GSKPSNKANSLIPSWVDGPAR---S-----PTTIG--STQTTAQVHPQLF 191 (429)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~---~-----~~~~g--~~~~~~~~~~~~l 191 (429)
... ..+...+.+.+....... . ..+..+. .....++++.... . ....+ +.+..++++|..+
T Consensus 82 ~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~ 158 (387)
T COG0665 82 GTG--AGLRRRGLLDLAAREGLKGLAQLERLAAELEA-AGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLL 158 (387)
T ss_pred Ccc--hhcchhhhhhhhhccccchHHHHHHHHHHHHh-cCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHH
Confidence 662 345555555555544311 0 0000000 0111012222111 1 11222 4788999999999
Q ss_pred HHHHHHHHHhhcCc-EEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhh-cccccccceeeEE
Q 014198 192 TKTLLNKAVNDYGL-EVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLA-SMFRVSGLKAHSI 267 (429)
Q Consensus 192 ~~~l~~~~~~~~Gv-~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~-~~~~~~~~~~~~~ 267 (429)
++.|.+.+ ++.|+ .+..++ +..+..+ . +++.|.+.+|. +.||.||+|+|+|+..+. ..+ ..+++.+.+++++
T Consensus 159 ~~~l~~~~-~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~~~~~~ 234 (387)
T COG0665 159 TRALAAAA-EELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAGELAATLGELPLPLRPVRGQAL 234 (387)
T ss_pred HHHHHHHH-HhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcCCCcCccccccceEE
Confidence 99999999 88884 555577 8888865 4 66788887665 999999999999999998 666 6678999999999
Q ss_pred EecCCCCCCCCCce----eEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 014198 268 ILEPKEADAITPHA----LFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVART 343 (429)
Q Consensus 268 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (429)
.+++.. ...... .... .....|+.|..++.+++++....... ...+....+..+..+++.+.+
T Consensus 235 ~~~~~~--~~~~~~~~~~~~~~---------~~~~~y~~~~~~g~~~~g~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 301 (387)
T COG0665 235 TTEPPE--GLLADGLAPVVLVV---------DDGGGYIRPRGDGRLRVGGTDEEGGD--DPSDPEREDLVIAELLRVARA 301 (387)
T ss_pred EecCCC--ccccccccceEEEe---------cCCceEEEEcCCCcEEEeecccccCC--CCccccCcchhHHHHHHHHHH
Confidence 988765 221111 1111 12346777877887866554433210 111111111146799999999
Q ss_pred hccccCcccccceeeeeecccC-CCCCceecc-CCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCCcccCCCCCC
Q 014198 344 VSSHLGEEAQVKAEQACFLPCT-DDGVPVIGE-LPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSP 421 (429)
Q Consensus 344 ~~p~l~~~~~~~~~~~g~r~~t-~d~~p~ig~-~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~ 421 (429)
++|.+.+ ..+.+.|.|.|+.+ +|+.|+||+ .+ .+|+|+++|++++|++++|.+|+++|++| .+.+.+.+...+.+
T Consensus 302 ~~P~l~~-~~~~~~w~g~~~~t~pd~~P~iG~~~~-~~~l~~a~G~~~~G~~~~p~~g~~lA~li-~g~~~~~~~~~~~~ 378 (387)
T COG0665 302 LLPGLAD-AGIEAAWAGLRPPTTPDGLPVIGRAAP-LPNLYVATGHGGHGFTLAPALGRLLADLI-LGGEPELDLRPLLL 378 (387)
T ss_pred hCccccc-cccceeeeccccCCCCCCCceeCCCCC-CCCEEEEecCCCcChhhccHHHHHHHHHH-cCCCCCCCcccccc
Confidence 9999988 78888999999987 999999995 77 89999999999999999999999999999 56566777888888
Q ss_pred CCcCCC
Q 014198 422 ARFGRP 427 (429)
Q Consensus 422 ~R~~~~ 427 (429)
.||...
T Consensus 379 ~~f~~~ 384 (387)
T COG0665 379 DRFAPG 384 (387)
T ss_pred cccccc
Confidence 876544
No 11
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.9e-35 Score=250.69 Aligned_cols=362 Identities=23% Similarity=0.321 Sum_probs=265.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH----CCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAK----KGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAE 125 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~----~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (429)
+..+||+|||||..|+++|+.|.+ .|.+|++||+++ +...++.-+.|-+...+.-++. .++...+.++++...+
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEn-IqmSLF~a~Flr~a~e 162 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPEN-IQMSLFTAEFLRNARE 162 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchh-hhhhhHHHHHHHHHHH
Confidence 357899999999999999999986 479999999999 7777788888878777766665 5666777788877777
Q ss_pred HhCC----CCCcCeeeeeeeEEeecccccCCCCC--ccccCCC------------CCCCCCCCCCCCCccCccccceeEe
Q 014198 126 ELNG----PDNYGYRALTTLSLTVTESQQSGSKP--SNKANSL------------IPSWVDGPARSPTTIGSTQTTAQVH 187 (429)
Q Consensus 126 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~ 187 (429)
.++. +.+..|...|.+.++.++........ .+...+. .++|++.+...-...| ....||+|
T Consensus 163 hl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG-~e~EGwfd 241 (509)
T KOG2853|consen 163 HLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLG-VEKEGWFD 241 (509)
T ss_pred hhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecc-cccccccC
Confidence 7765 55788999999999885543221110 1111333 3444444443222222 46789999
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEceEEEEEEc---------cCC-------cEEEEEEe--C--CeEEEcCEEEEcCCCCc
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGKVERVGVG---------EGG-------RVESVMIE--G--GRVVESDAVVLALGPWS 247 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~v~~i~~~---------~~g-------~v~~v~~~--~--g~~i~ad~vV~a~G~~s 247 (429)
|..++..+.+.+ ...|+.+..+.|+.++.+ +++ ++.++... + .+.++++.+|+|+|+|+
T Consensus 242 pw~LLs~~rrk~-~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s 320 (509)
T KOG2853|consen 242 PWALLSGIRRKA-ITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWS 320 (509)
T ss_pred HHHHHHHHHHHh-hhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccH
Confidence 999999999999 899999999998887765 233 33333332 2 14689999999999999
Q ss_pred hHHH-h---------hhcccccccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCC--CcEEEeccC
Q 014198 248 GKFE-L---------LASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPT--GEVYLCGMS 315 (429)
Q Consensus 248 ~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~i~g~~ 315 (429)
.++. + +..++|+.|.+.+++.+..+.. |-...++..+ +. .+|.|.+ |.-+++|-+
T Consensus 321 ~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~-PGl~~Pl~iD----------ps--G~f~Rrdglg~nfl~grs 387 (509)
T KOG2853|consen 321 GQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDV-PGLDTPLTID----------PS--GVFFRRDGLGGNFLCGRS 387 (509)
T ss_pred HHHHHHhccCCCCceeeecccCCccceeEEEEeCCCC-CCCCCceeEC----------CC--ccEEEecCCCCceecccC
Confidence 9987 2 2357788888888887776542 2122333333 22 3555544 344456655
Q ss_pred CCCCCCCCCCCCCCCHHHH-HHHHHHHHHhccccCcccccceeeeeecc-cCCCCCceeccCCCCCcEEEEecCCCccch
Q 014198 316 SEQEVPDDPETVSGDPASI-QVLKRVARTVSSHLGEEAQVKAEQACFLP-CTDDGVPVIGELPGIKGCYVGTGHNCWGIL 393 (429)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~p~l~~~~~~~~~~~g~r~-~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~ 393 (429)
...+..++.....++.+.+ +.+.-.+-...|.++. .++.+.|+|++. .|.|..++||++|-+.|+|+++|++|||+.
T Consensus 388 p~ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~fet-akVqsaWaGyyD~NtfD~ngViG~HP~y~Nly~atGFsghGvq 466 (509)
T KOG2853|consen 388 PSEDEEPDHSNLDVDHDYFYQKIWPHLANRVPAFET-AKVQSAWAGYYDHNTFDDNGVIGEHPLYTNLYMATGFSGHGVQ 466 (509)
T ss_pred CccccCCCccccccChHHHHhhhhHHHHhcccccce-eeeeehhcccccccccccCCcccCCcceeeeeeeecccccchh
Confidence 3333333444455666655 5677777777888888 999999999877 589999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCcccCCCCCCCCcCCCCC
Q 014198 394 NGPATGAALAELVMDGCASIVDLSRFSPARFGRPSA 429 (429)
Q Consensus 394 ~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~~ 429 (429)
.+|++|+.++++|++|+-..+|++.|+.+||...++
T Consensus 467 qs~avgRAiaElIldG~f~tidLsrf~f~Rlv~~qp 502 (509)
T KOG2853|consen 467 QSPAVGRAIAELILDGAFITIDLSRFDFRRLVKMQP 502 (509)
T ss_pred cchHHHHHHHHHHhcCceeEEeccccchhHHhccCc
Confidence 999999999999999999999999999999987653
No 12
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=100.00 E-value=1.1e-35 Score=282.23 Aligned_cols=330 Identities=23% Similarity=0.293 Sum_probs=242.2
Q ss_pred HHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCC-cchhhhH----HHHHHHHHHHHHhCCCCCcCeeeeeee
Q 014198 68 TAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGG-PLSSLAR----ASFNLHRSLAEELNGPDNYGYRALTTL 141 (429)
Q Consensus 68 ~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~-~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (429)
+|++|+++|++|+|||+.. ++.++|++++|++++.+.... ....+.. ++.++|+++.++ +. ++.++..|.+
T Consensus 1 ~A~~La~~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~~--~~~~~~~G~L 77 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-GF--PFDHEWCGVL 77 (381)
T ss_pred ChHHHHhCCCeeEEEeCCCcccccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CC--CcccccCceE
Confidence 5899999999999999965 889999999999998654322 2344443 455677776542 33 5667888999
Q ss_pred EEeecccccC-CCCCccccC--CCCCCCCCCCCCC-----CCccC--ccccceeEehHHHHHHHHHHHHhhcCcEEEEce
Q 014198 142 SLTVTESQQS-GSKPSNKAN--SLIPSWVDGPARS-----PTTIG--STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK 211 (429)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~-----~~~~g--~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~ 211 (429)
.++.+..+.. ..+...... ....++++.++.. ....+ +.+.++++||.+++..|.+.+ ++ |+++++++
T Consensus 78 ~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~-~~-G~~i~~~~ 155 (381)
T TIGR03197 78 QLAYDEKEAERLQKLLEQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHA-GI-RLTLHFNT 155 (381)
T ss_pred EecCChHHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhcc-CC-CcEEEeCC
Confidence 8887654433 111111110 0112344332221 11122 467889999999999999999 88 99999999
Q ss_pred -EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCCCCCceeEeeeccCC
Q 014198 212 -VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQ 290 (429)
Q Consensus 212 -v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (429)
|++++.+ ++. +.|++.+|..++||.||+|+|+|+..+... ..+|+.+.+++++.++++. ..........
T Consensus 156 ~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~-~~~pi~p~rg~~~~~~~~~--~~~~~~~~~~----- 225 (381)
T TIGR03197 156 EITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAGQLAQT-AHLPLRPVRGQVSHLPATE--ALSALKTVLC----- 225 (381)
T ss_pred EEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccccccccc-ccCCccccccceeeccCCC--cccccCceEe-----
Confidence 9999876 554 457777776799999999999999988733 5778999999999887543 1111111111
Q ss_pred CCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccC-----cccccceeeeeecccC
Q 014198 291 GEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLG-----EEAQVKAEQACFLPCT 365 (429)
Q Consensus 291 ~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~-----~~~~~~~~~~g~r~~t 365 (429)
.+.|+.|+.+|.++ +|++.+.. ..+...+.+..+.+++.+.+++|.+. + .++.+.|+|+||.|
T Consensus 226 ------~~~y~~p~~~g~~~-iG~t~~~~----~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~-~~~~~~~~G~r~~t 293 (381)
T TIGR03197 226 ------YDGYLTPANNGEHC-IGASYDRN----DDDLALREADHAENLERLAECLPALAWASEVD-ISALQGRVGVRCAS 293 (381)
T ss_pred ------CCceecccCCCceE-eecccCCC----CCCCCcCHHHHHHHHHHHHHhCcccchhhccC-ccccCceEEEeccC
Confidence 12467788888775 45554432 12345567778999999999999986 5 67899999999999
Q ss_pred CCCCceeccCCC-------------------------CCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCCccc---CC
Q 014198 366 DDGVPVIGELPG-------------------------IKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVD---LS 417 (429)
Q Consensus 366 ~d~~p~ig~~~~-------------------------~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~---~~ 417 (429)
+|+.|+||++|+ .+|+|+++|++|+||+++|++|++++++|+ +++.+.+ ++
T Consensus 294 ~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~-~~~~~~~~~~~~ 372 (381)
T TIGR03197 294 PDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQIC-GEPLPLERDLLH 372 (381)
T ss_pred CCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHh-CCCCCCcHHHHH
Confidence 999999999998 899999999999999999999999999995 5555555 57
Q ss_pred CCCCCCcC
Q 014198 418 RFSPARFG 425 (429)
Q Consensus 418 ~~~~~R~~ 425 (429)
.|+|+||.
T Consensus 373 ~~~~~rf~ 380 (381)
T TIGR03197 373 ALHPARFL 380 (381)
T ss_pred hcChhhhc
Confidence 89999995
No 13
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=273.09 Aligned_cols=358 Identities=23% Similarity=0.290 Sum_probs=283.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNG 129 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~-V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 129 (429)
+...||+|||||..|+++||+|+++|.+ ++++|+....+|+++.+.|+++.....+.....+...+...+.++..+.+.
T Consensus 37 ~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl 116 (856)
T KOG2844|consen 37 PSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGL 116 (856)
T ss_pred CCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 4568999999999999999999999999 555666668899999999999985556666677788888899999999888
Q ss_pred CCCcCeeeeeeeEEeecccccCCCCCc-c--ccCCCCCCCCCCCCCC--------CCccC--ccccceeEehHHHHHHHH
Q 014198 130 PDNYGYRALTTLSLTVTESQQSGSKPS-N--KANSLIPSWVDGPARS--------PTTIG--STQTTAQVHPQLFTKTLL 196 (429)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~--------~~~~g--~~~~~~~~~~~~l~~~l~ 196 (429)
..++.++|.+.++.+....+..++. . ...+...+.+++++.. ....+ +.|.++.+||..++++|.
T Consensus 117 --~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala 194 (856)
T KOG2844|consen 117 --HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALA 194 (856)
T ss_pred --CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHH
Confidence 7789999999999998766522221 1 1144555666665432 12222 579999999999999999
Q ss_pred HHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEecCCCC
Q 014198 197 NKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILEPKEA 274 (429)
Q Consensus 197 ~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 274 (429)
..+ ++.|+.|++++ |++|... +++..+|.|..| .|++..||+|+|.|++.+. +.+.+.|+.+...+++..++-++
T Consensus 195 ~~A-~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~YvvT~~IeG 271 (856)
T KOG2844|consen 195 RAA-SALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPMHHAYVVTSRIEG 271 (856)
T ss_pred HHH-HhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceeeeeeEEEecccCC
Confidence 999 99999999999 9999877 555568998765 7999999999999999888 78899999999988888776652
Q ss_pred CCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHhccc
Q 014198 275 DAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVP-------DDPETVSGDPASIQVLKRVARTVSSH 347 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~p~ 347 (429)
......+++.+ .+..+|.|..+.-++.|+.+...+. ......+++.+.++..++.+....|.
T Consensus 272 i~s~t~p~irD-----------~DgSvylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~ 340 (856)
T KOG2844|consen 272 VSSLTRPNIRD-----------LDGSVYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERVPV 340 (856)
T ss_pred ccCCCccceec-----------ccceEEEEecCCceeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhCch
Confidence 22222223333 2345666643333344554443211 01112336888899999999999999
Q ss_pred cCcccccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCCcccCCCCCCCCcCC
Q 014198 348 LGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCASIVDLSRFSPARFGR 426 (429)
Q Consensus 348 l~~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~ 426 (429)
+++ ..+.+.-+|.-.+|||.+|++|+.|..+|.|+++|+++.|++++-.+|+.++++|++|++ +.|+..|++.||..
T Consensus 341 l~k-~~i~~~v~gpe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g~p-~~d~~~~D~~Rf~~ 417 (856)
T KOG2844|consen 341 LEK-AGIKSLVNGPETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGKYLAEWIIHGQP-PLDVHELDLRRFGK 417 (856)
T ss_pred hhh-cCccceecCccccCCccccccCCCccccceEEeecCCccceeccCchhHHHHHHhhcCCC-CccchhccHHHhhh
Confidence 999 889899999999999999999999999999999999999999999999999999999987 88999999999964
No 14
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=9.1e-35 Score=250.85 Aligned_cols=355 Identities=23% Similarity=0.324 Sum_probs=247.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc--ccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC--AASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELN 128 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~--~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (429)
.+..||+|||||+.|+++|++|+++|.+++++|+.++++ |+|...+.++++.+.+. .+..+..++++.|+++..+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~-~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAED-KYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhH-HHHHHHHHHHHHHHhChhhhc
Confidence 456899999999999999999999999999999999654 66777777888765433 357888889999998877766
Q ss_pred CCCCcCeeeeeeeEEeecccc-cCCCCCcc--ccCCCCCCCCCCCCCC----------CCccC-ccccceeEehHHHHHH
Q 014198 129 GPDNYGYRALTTLSLTVTESQ-QSGSKPSN--KANSLIPSWVDGPARS----------PTTIG-STQTTAQVHPQLFTKT 194 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~g-~~~~~~~~~~~~l~~~ 194 (429)
. +..++...+.....+ .++..... .+.....+.+..+++. ....| ....+|++++.+-+++
T Consensus 84 ~-----~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~ 158 (399)
T KOG2820|consen 84 V-----KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKA 158 (399)
T ss_pred e-----eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHH
Confidence 5 333344333333332 11110000 0022222222222221 12223 3578899999999999
Q ss_pred HHHHHHhhcCcEEEEce-EEEEEEc-cCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH--hhhcccccccceeeEEEec
Q 014198 195 LLNKAVNDYGLEVVIGK-VERVGVG-EGGRVESVMIEGGRVVESDAVVLALGPWSGKFE--LLASMFRVSGLKAHSIILE 270 (429)
Q Consensus 195 l~~~~~~~~Gv~v~~~~-v~~i~~~-~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~--~~~~~~~~~~~~~~~~~~~ 270 (429)
+...+ ++.|+.++.++ |+.+... +++....|.|.+|..+.|+.+|+++|+|.+.++ .++...|+.+.+.....++
T Consensus 159 ~~~~~-~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~ltvcywk 237 (399)
T KOG2820|consen 159 LQDKA-RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQLTVCYWK 237 (399)
T ss_pred HHHHH-HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeEeehhhhe
Confidence 99999 99999999999 8887742 245567789989988999999999999999999 4788899988887666655
Q ss_pred CCCCCCCCCceeEeeeccCCCCCCCCCCCceEe-cCCCcEEEeccC--------------CCCCCCCCCC--CCCCCHHH
Q 014198 271 PKEADAITPHALFLSYYPAQGEGGKPMDPEVYP-RPTGEVYLCGMS--------------SEQEVPDDPE--TVSGDPAS 333 (429)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~g~~--------------~~~~~~~~~~--~~~~~~~~ 333 (429)
... ++.+.... ...++++| .++..++..+.+ .....+.+++ ...+....
T Consensus 238 ~~~-----~~~~~l~~---------d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~ 303 (399)
T KOG2820|consen 238 TKK-----NMPVYLFD---------DDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKA 303 (399)
T ss_pred eec-----CCceeecC---------CCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchH
Confidence 433 12221110 01122221 122222222111 1111111222 12233446
Q ss_pred HHHHHHHHHHhccccCcccccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcCCCC-
Q 014198 334 IQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDGCAS- 412 (429)
Q Consensus 334 ~~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~- 412 (429)
++.+....+++.|.+.+ ........|++..|+|..++|+.+|+..|+++++|++||||+++|.+|+.++++++ +...
T Consensus 304 idl~~~f~~~~~p~l~~-~~p~~t~~C~YT~TpD~~FviD~~P~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~-~~~~e 381 (399)
T KOG2820|consen 304 IDLMRRFLRTFGPDLDD-RSPINTKMCMYTDTPDANFVIDKHPQYDNVFVGGGGSGHGFKFAPNIGKYLAEMAM-GDLSE 381 (399)
T ss_pred HHHHHHHHHHhCccccC-CCcceeeEEEeeCCCCcCeeeecCCCcccEEEecCCCCcceeecchHHHHHHHHhh-hcccc
Confidence 67777777888999987 77889999999999999999999999999999999999999999999999999995 4444
Q ss_pred -cccCCCCCCCCcCCCC
Q 014198 413 -IVDLSRFSPARFGRPS 428 (429)
Q Consensus 413 -~~~~~~~~~~R~~~~~ 428 (429)
..|...|+.+||...+
T Consensus 382 ~~~d~~~f~~~rf~~~~ 398 (399)
T KOG2820|consen 382 EWVDAWRFREDRFESEA 398 (399)
T ss_pred cceehhhhhhhhccccc
Confidence 7889999999997643
No 15
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=100.00 E-value=1.5e-34 Score=270.80 Aligned_cols=318 Identities=27% Similarity=0.370 Sum_probs=241.3
Q ss_pred HHHHHCCCcEEEEcCCCCccccccccCCeeeeccC---CCCcchhhhHHHHHHHHHHHHHhCC--CCCcCeeeeeeeEEe
Q 014198 70 YFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWC---DGGPLSSLARASFNLHRSLAEELNG--PDNYGYRALTTLSLT 144 (429)
Q Consensus 70 ~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 144 (429)
++|+++|.+|+||||..++.|+|++++|++++... .......+..++.++|+++.+++.. ..++.++.+|.+.+.
T Consensus 1 ~~La~~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l~~a 80 (337)
T TIGR02352 1 WELAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTLVVA 80 (337)
T ss_pred ChHHHCCCceEEEcCCCCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEEEEe
Confidence 47899999999999999889999999999987532 3445778899999999998876522 226778999999998
Q ss_pred ecccccC-CCCCccc--cCCCCCCCCCCCCCC-------CCc-cC-ccccceeEehHHHHHHHHHHHHhhcCcEEEEce-
Q 014198 145 VTESQQS-GSKPSNK--ANSLIPSWVDGPARS-------PTT-IG-STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK- 211 (429)
Q Consensus 145 ~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~-------~~~-~g-~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~- 211 (429)
.+..+.+ +.+.... ..+...++++.+... ... .+ +.+.+++++|.+++..|.+.+ ++.|++++.++
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~-~~~g~~~~~~~~ 159 (337)
T TIGR02352 81 FDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKAL-EKLGVEIIEHTE 159 (337)
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHH-HHcCCEEEccce
Confidence 7765544 1111111 133445566654322 111 12 356789999999999999999 88999999999
Q ss_pred EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCCCCCceeEeeeccCCC
Q 014198 212 VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQG 291 (429)
Q Consensus 212 v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (429)
|+++..+ ++.+..|.+.+| .++||.||+|+|+|+..+.. .++.+.+++++.++.+.. +.....+.... .
T Consensus 160 v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~----~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~-~--- 228 (337)
T TIGR02352 160 VQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWAGELLP----LPLRPVRGQPLRLEAPAV-PLLNRPLRAVV-Y--- 228 (337)
T ss_pred EEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhhhhccc----CCccccCceEEEeecccc-ccCCcccceEE-E---
Confidence 9999987 677777887665 89999999999999998753 678899999988875531 11111111000 0
Q ss_pred CCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeeeeecccCCCCCce
Q 014198 292 EGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPV 371 (429)
Q Consensus 292 ~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~~p~ 371 (429)
....|+.|..+|++++ |.+.... ..+..++.+.++.+++.+.+++|.+.+ .++.+.|+|+||+++|+.|+
T Consensus 229 ----~~~~y~~p~~~g~~~i-G~~~~~~----~~~~~~~~~~~~~l~~~~~~~~P~l~~-~~~~~~~~g~r~~t~D~~pi 298 (337)
T TIGR02352 229 ----GRRVYIVPRRDGRLVV-GATMEES----GFDTTPTLGGIKELLRDAYTILPALKE-ARLLETWAGLRPGTPDNLPY 298 (337)
T ss_pred ----cCCEEEEEcCCCeEEE-EEecccc----CccCCCCHHHHHHHHHHHHHhCCCccc-CcHHHheecCCCCCCCCCCE
Confidence 1134677888887754 5554321 234456778899999999999999988 78899999999999999999
Q ss_pred eccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcC
Q 014198 372 IGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDG 409 (429)
Q Consensus 372 ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g 409 (429)
||++|+.+|+|+++|++|+||+++|++|+.+|++|.++
T Consensus 299 ig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 299 IGEHPEDRRLLIATGHYRNGILLAPATAEVIADLILGK 336 (337)
T ss_pred eCccCCCCCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence 99999889999999999999999999999999999543
No 16
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=100.00 E-value=2.7e-34 Score=271.65 Aligned_cols=325 Identities=20% Similarity=0.155 Sum_probs=229.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNY 133 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (429)
+||+|||||++|+++|++|+++|++|+|+|++..+.++|+++.|++.+..........+..++.++|+++.++.+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---- 76 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGI---- 76 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCC----
Confidence 5899999999999999999999999999999998889999999999864443345677888999999999887654
Q ss_pred CeeeeeeeEEeecccccC-CCCCcccc--CCCCCCCCCCCCCC--------CCccC--ccccceeEehHHHHHHHHHHHH
Q 014198 134 GYRALTTLSLTVTESQQS-GSKPSNKA--NSLIPSWVDGPARS--------PTTIG--STQTTAQVHPQLFTKTLLNKAV 200 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~--------~~~~g--~~~~~~~~~~~~l~~~l~~~~~ 200 (429)
.+.+.|.+.+..++.+.+ ..+..... .+..++++++++.. +...+ +.+.++++||..++..|.+.+
T Consensus 77 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~- 155 (365)
T TIGR03364 77 WVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYL- 155 (365)
T ss_pred CEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHH-
Confidence 367788888876654433 11111111 22345566654322 11122 356789999999999999998
Q ss_pred hh-cCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEecCCCCCCC
Q 014198 201 ND-YGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILEPKEADAI 277 (429)
Q Consensus 201 ~~-~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (429)
.+ .|+++++++ |++|+. + .|.+.++ .++||.||+|+|+|+..++ .++..+++.+.++|++.+++.. .+
T Consensus 156 ~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~~~~~~~~p~~~q~~~~~p~~--~~ 226 (365)
T TIGR03364 156 AEQHGVEFHWNTAVTSVET---G---TVRTSRG-DVHADQVFVCPGADFETLFPELFAASGVRRCKLQMMRTAPQP--RL 226 (365)
T ss_pred HhcCCCEEEeCCeEEEEec---C---eEEeCCC-cEEeCEEEECCCCChhhhCcchhhccCcceEEEEeeeccCCC--CC
Confidence 65 499999999 999963 2 3667555 5789999999999999887 5566788999999998887654 21
Q ss_pred C-CceeEeeec------cC--------------CCCCC--CCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHH
Q 014198 278 T-PHALFLSYY------PA--------------QGEGG--KPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASI 334 (429)
Q Consensus 278 ~-~~~~~~~~~------~~--------------~~~~~--~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~ 334 (429)
. +..+..... .. ....+ .....|+.|+++|.+++ |++.+.... .+...+....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~i-G~~~~~~~~---~~~~~~~~~~ 302 (365)
T TIGR03364 227 PLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELII-GDSHEYGLA---PDPFDDEEID 302 (365)
T ss_pred cCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEe-cCcccccCC---CCCcchHHHH
Confidence 1 011100000 00 00000 01123556778888865 545443211 1112244455
Q ss_pred HHHHHHHHHhccccCcccccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHH
Q 014198 335 QVLKRVARTVSSHLGEEAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGA 400 (429)
Q Consensus 335 ~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~ 400 (429)
+.+.+.+..++ .+.+ .++.+.|+|+||+|+|..|+++.. .+|+|+++|++|+|++++|.+|+
T Consensus 303 ~~l~~~~~~~~-~l~~-~~~~~~w~G~r~~t~d~~~v~~~~--~~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 303 NLILAEAKTIL-GLPD-LDIVERWQGVYASSPPAPIFLERP--DDGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred HHHHHHHHHhc-CCCC-CceEEEEeEEecCCCCCCceecCC--CCCeEEEEecCCCcccccccccC
Confidence 67777787765 6777 788999999999999988888744 59999999999999999999885
No 17
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=6.4e-32 Score=265.49 Aligned_cols=331 Identities=17% Similarity=0.212 Sum_probs=232.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc---chhhhHHHHHHHHHHHHHhC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP---LSSLARASFNLHRSLAEELN 128 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~ 128 (429)
..+||+|||||++|+++|++|+++|++|+||||.++++|+|++++|+++.++.+... ....+.++.+++.++...+
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~- 83 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHC- 83 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHh-
Confidence 468999999999999999999999999999999989999999999999987654322 2233334445555554432
Q ss_pred CCCCcCeeeeeeeEEeecccccC-CCCCcc--ccCCCCCCCCCCCCCC-------CCccC-ccccceeEehHHHHHHHHH
Q 014198 129 GPDNYGYRALTTLSLTVTESQQS-GSKPSN--KANSLIPSWVDGPARS-------PTTIG-STQTTAQVHPQLFTKTLLN 197 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~-------~~~~g-~~~~~~~~~~~~l~~~l~~ 197 (429)
++..+.+.+.....+.. ...... ...+...++++++... ....+ ....++++||..++.++..
T Consensus 84 ------~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~ 157 (546)
T PRK11101 84 ------VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANML 157 (546)
T ss_pred ------hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHH
Confidence 33445555554433322 111111 1123334555543321 11222 2223589999999999999
Q ss_pred HHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC---C--eEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEec
Q 014198 198 KAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG---G--RVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILE 270 (429)
Q Consensus 198 ~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~---g--~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~ 270 (429)
.+ .++|+++++++ |+++..+ ++++++|++.+ + ..|+||.||+|+|+|+..+. +.+...++.|.+++++.++
T Consensus 158 ~A-~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i~p~kG~~lv~~ 235 (546)
T PRK11101 158 DA-KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMD 235 (546)
T ss_pred HH-HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCceeecceEEEEEC
Confidence 99 88999999999 9999887 67777777632 2 47999999999999999998 6677889999999999987
Q ss_pred CCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCc
Q 014198 271 PKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGE 350 (429)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~ 350 (429)
... .. .++.....+ ....++.| .+ ...++|++.+.....+.++..++.+.++.|++.+.+++|.+..
T Consensus 236 ~~~----~~-~vi~~~~~~------~~~~~~vp-~~-~~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~ 302 (546)
T PRK11101 236 HRI----NN-HVINRCRKP------ADADILVP-GD-TISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAK 302 (546)
T ss_pred Ccc----Cc-eeEeccCCC------CCCCEEEe-cC-CEEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCc
Confidence 532 12 222111100 11123334 33 3556787765322123345678899999999999999999998
Q ss_pred ccccceeeeeecccCC-CC----------CceeccC--CCCCcEEEEecCCCccchhhHHHHHHHHHHHhc
Q 014198 351 EAQVKAEQACFLPCTD-DG----------VPVIGEL--PGIKGCYVGTGHNCWGILNGPATGAALAELVMD 408 (429)
Q Consensus 351 ~~~~~~~~~g~r~~t~-d~----------~p~ig~~--~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 408 (429)
.++++.|+|+||... ++ .++++.. .+.+|++.++|. .++.++.+|+.+++++..
T Consensus 303 -~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GG---kltt~r~~Ae~v~d~v~~ 369 (546)
T PRK11101 303 -TRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGG---KLMTYRLMAEWATDAVCR 369 (546)
T ss_pred -cCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECC---hHHHHHHHHHHHHHHHHH
Confidence 899999999999843 22 3678744 346899999993 399999999999999853
No 18
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=4.4e-32 Score=258.46 Aligned_cols=339 Identities=16% Similarity=0.157 Sum_probs=242.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC-CccccccccCCeeeeccCCC-C-cchhhhHHHHHHHHHHHHHh
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS-VACAASGKAGGFLALDWCDG-G-PLSSLARASFNLHRSLAEEL 127 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~ 127 (429)
.+||+|||||++|+++|++|+++ |++|+|+||.. ++.++|+++.|++++..... . ....++.++.++|.++.+++
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999 99999999997 78899999999998864322 2 25678889999999998876
Q ss_pred CCCCCcCeeeeeeeEEeecccccC-CCCCccc--cCCCCCCCCCCCCCC---C---CccC-ccccceeEehHHHHHHHHH
Q 014198 128 NGPDNYGYRALTTLSLTVTESQQS-GSKPSNK--ANSLIPSWVDGPARS---P---TTIG-STQTTAQVHPQLFTKTLLN 197 (429)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~---~---~~~g-~~~~~~~~~~~~l~~~l~~ 197 (429)
+. .++.+|.+.+..++.+.. +.+.... ..+...++++.+... + ...+ +.+.++++++..+++.|.+
T Consensus 82 ~~----~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~ 157 (393)
T PRK11728 82 GI----PYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAE 157 (393)
T ss_pred CC----CcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHH
Confidence 44 477889988887654433 1111111 022334455443322 1 1112 4678899999999999999
Q ss_pred HHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhc--ccccccceeeEEEecCCC
Q 014198 198 KAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLAS--MFRVSGLKAHSIILEPKE 273 (429)
Q Consensus 198 ~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~--~~~~~~~~~~~~~~~~~~ 273 (429)
.+ ++.|+++++++ |+++..+ ++.+ .|.+.++ ++.||.||+|+|.|+..+. .++. ..++.+.+++++.++...
T Consensus 158 ~~-~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~ 233 (393)
T PRK11728 158 LI-QARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEK 233 (393)
T ss_pred HH-HhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEecccc
Confidence 99 88899999999 9999876 4544 5777655 7999999999999998887 5554 367889999999987543
Q ss_pred CCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCC-C---------------------CH
Q 014198 274 ADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVS-G---------------------DP 331 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~-~---------------------~~ 331 (429)
. ...+..++.-... . .+..+.++.|+.+|+++++++..+.. .....+.. . +.
T Consensus 234 ~-~~~~~~v~~~p~~-~---~~~~g~~~~p~~~G~~~~G~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (393)
T PRK11728 234 N-QLVNHLIYPVPDP-A---FPFLGVHLTRMIDGSVTVGPNAVLAF-KREGYRKRDFSLRDLLEILTYPGFWKLAQKHWR 307 (393)
T ss_pred c-cccCCceecCCCC-C---CCcceEEeecCCCCCEEECCCcceeh-hhcCccccCCCHHHHHHHHhccchHHHHHHHHH
Confidence 1 2233333211100 0 01123467788899886644333211 00111111 1 34
Q ss_pred HHHHHH---------HHHHHHhccccCcccccceeeeeecc--cCCCCCceeccCC-CCCcEEEEecCCCccchhhHHHH
Q 014198 332 ASIQVL---------KRVARTVSSHLGEEAQVKAEQACFLP--CTDDGVPVIGELP-GIKGCYVGTGHNCWGILNGPATG 399 (429)
Q Consensus 332 ~~~~~l---------~~~~~~~~p~l~~~~~~~~~~~g~r~--~t~d~~p~ig~~~-~~~~~~~~~G~~~~G~~~a~~~a 399 (429)
+.++++ ++.+++++|.+.. .++...|+|.|| .++|+.|+-+.+- ..++.+.+.|..+.|++.+|.+|
T Consensus 308 ~~~~~~~~~~~~~~~~~~a~~~~P~l~~-~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia 386 (393)
T PRK11728 308 SGLGEMKNSLSKSGYLRLVQKYCPSLTL-SDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIG 386 (393)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhCCCCCH-HHcccCCCceeeeeeCCCCCccCceEEecCCCEEEEcCCCCchHHccHHHH
Confidence 455666 5899999999998 899999999999 8899877655532 23889999999999999999999
Q ss_pred HHHHHHH
Q 014198 400 AALAELV 406 (429)
Q Consensus 400 ~~la~~i 406 (429)
+.+++++
T Consensus 387 ~~v~~~~ 393 (393)
T PRK11728 387 EHIVSKV 393 (393)
T ss_pred HHHHhhC
Confidence 9999864
No 19
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.97 E-value=1e-27 Score=233.94 Aligned_cols=339 Identities=19% Similarity=0.123 Sum_probs=221.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc-chhhhHHHHHHHHHHHHHhCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP-LSSLARASFNLHRSLAEELNG 129 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 129 (429)
...+||+|||||++|+++|+.|+++|++|+||||+++++|+|++++++++.+..+... ...+..+++..+..+......
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~p~ 83 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPH 83 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999999999999999999999999999988765443 456777777666555544322
Q ss_pred C---CCcCeeeeeeeEEeec-ccccCCCCC-ccccCCCCCCCCCC------CCCCCCcc-CccccceeEehHHHHHHHHH
Q 014198 130 P---DNYGYRALTTLSLTVT-ESQQSGSKP-SNKANSLIPSWVDG------PARSPTTI-GSTQTTAQVHPQLFTKTLLN 197 (429)
Q Consensus 130 ~---~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~-g~~~~~~~~~~~~l~~~l~~ 197 (429)
. ..+.+........... .....+... .....-...+.+.. ..+.+... ++.+.++++||.+++..+.+
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~l~~ 163 (508)
T PRK12266 84 IIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVLNAR 163 (508)
T ss_pred cccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHHHHH
Confidence 1 0110000000000000 000000000 00000000000000 00111112 24567788999999999999
Q ss_pred HHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC---C--eEEEcCEEEEcCCCCchHHH-h-hhc--ccccccceeeEE
Q 014198 198 KAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG---G--RVVESDAVVLALGPWSGKFE-L-LAS--MFRVSGLKAHSI 267 (429)
Q Consensus 198 ~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~---g--~~i~ad~vV~a~G~~s~~~~-~-~~~--~~~~~~~~~~~~ 267 (429)
.+ .+.|+++++++ |+++..+ ++. ++|.+.+ + .+++|+.||+|+|+|+..+. . .+. ..++.+.+++++
T Consensus 164 ~A-~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p~kG~~l 240 (508)
T PRK12266 164 DA-AERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRLVKGSHI 240 (508)
T ss_pred HH-HHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceeeeeeEEE
Confidence 99 88899999999 9999876 443 4566543 3 37899999999999999987 3 243 457889999998
Q ss_pred EecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcc-
Q 014198 268 ILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSS- 346 (429)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p- 346 (429)
.++... . .....+.. ..+++ ..++.|..+|.. ++|+++... ..++++..++++.++.|++.+.+++|
T Consensus 241 vl~~~~--~-~~~~~~~~--~~dgr-----~v~~~P~~~g~~-liGttd~~~-~~~~~~~~~~~~~i~~Ll~~~~~~~p~ 308 (508)
T PRK12266 241 VVPRLF--D-HDQAYILQ--NPDGR-----IVFAIPYEDDFT-LIGTTDVEY-KGDPAKVAISEEEIDYLCKVVNRYFKK 308 (508)
T ss_pred EECCcC--C-CCcEEEEe--CCCCC-----EEEEEEeCCCeE-EEecCCCCC-CCCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 876432 1 11222222 12231 133456655544 567765421 12334567889999999999999995
Q ss_pred ccCcccccceeeeeecccCCCCCc---------eeccC--CCCCcEEEEecCCCccchhhHHHHHHHHHHHhc
Q 014198 347 HLGEEAQVKAEQACFLPCTDDGVP---------VIGEL--PGIKGCYVGTGHNCWGILNGPATGAALAELVMD 408 (429)
Q Consensus 347 ~l~~~~~~~~~~~g~r~~t~d~~p---------~ig~~--~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 408 (429)
.+.. .++++.|+|+||.++|+.+ +|-.. .+.+|++.++|. .++.++.+|+.+++.++.
T Consensus 309 ~l~~-~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Gg---k~Tt~r~mAe~~~~~~~~ 377 (508)
T PRK12266 309 QLTP-ADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFGG---KITTYRKLAEHALEKLAP 377 (508)
T ss_pred CCCH-HHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEcC---hHHHHHHHHHHHHHHHHH
Confidence 7887 8899999999999988543 33322 234789999985 599999999999999843
No 20
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=4.5e-28 Score=236.82 Aligned_cols=334 Identities=19% Similarity=0.114 Sum_probs=223.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc-chhhhHHHHHHHHHHHHHhCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP-LSSLARASFNLHRSLAEELNG 129 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 129 (429)
..++||+|||||++|+++|++|+++|++|+||||+++++|+|++++++++.+..+... ...+..+++..+..+......
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 4568999999999999999999999999999999999999999999999976543222 456677777666665554221
Q ss_pred CCCcCeeeeeeeEEeecccccC-CC-----CCcccc----CCCCCCCCCCCCC------CCCc-cCccccceeEehHHHH
Q 014198 130 PDNYGYRALTTLSLTVTESQQS-GS-----KPSNKA----NSLIPSWVDGPAR------SPTT-IGSTQTTAQVHPQLFT 192 (429)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~----~~~~~~~~~~~~~------~~~~-~g~~~~~~~~~~~~l~ 192 (429)
+ .+..+ +.+........ .. ..+..+ .....++++.... .... .++.+.++++++..++
T Consensus 84 ---l-~~~~~-~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~ 158 (502)
T PRK13369 84 ---I-IWPMR-FVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLV 158 (502)
T ss_pred ---c-ccccc-eEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHH
Confidence 0 11122 22222211110 00 000000 0111222222211 1111 2245678899999999
Q ss_pred HHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC----eEEEcCEEEEcCCCCchHHH--hhhcc--cccccce
Q 014198 193 KTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG----RVVESDAVVLALGPWSGKFE--LLASM--FRVSGLK 263 (429)
Q Consensus 193 ~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g----~~i~ad~vV~a~G~~s~~~~--~~~~~--~~~~~~~ 263 (429)
..+...+ ++.|+++++++ |+++..+ ++. +.|.+.++ .+++|+.||+|+|+|+..+. ..+.. .++.+.+
T Consensus 159 ~~l~~~a-~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~k 235 (502)
T PRK13369 159 VLNALDA-AERGATILTRTRCVSARRE-GGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVK 235 (502)
T ss_pred HHHHHHH-HHCCCEEecCcEEEEEEEc-CCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEee
Confidence 9999999 88999999999 9999876 443 45666554 36899999999999999997 23433 4688999
Q ss_pred eeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 014198 264 AHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVART 343 (429)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (429)
|+.+.++... . ........ ..+++ ..++.|..++ ..++|+++... ..++++..++++.++.+++.+.+
T Consensus 236 G~~lv~~~~~--~-~~~~~~~~--~~dgr-----~~~i~P~~~~-~~liGtTd~~~-~~~~~~~~~~~~~i~~ll~~~~~ 303 (502)
T PRK13369 236 GSHIVVPKFW--D-GAQAYLFQ--NPDKR-----VIFANPYEGD-FTLIGTTDIAY-EGDPEDVAADEEEIDYLLDAANR 303 (502)
T ss_pred EEEEEeCCcc--C-CCceEEEe--CCCCe-----EEEEEEecCC-EEEEEecCccc-cCCCCCCCCCHHHHHHHHHHHHH
Confidence 9988885432 1 11122211 12221 2356677555 44567776431 12334677899999999999999
Q ss_pred hcc-ccCcccccceeeeeecccCCCC---------CceeccC--CCCCcEEEEecCCCccchhhHHHHHHHHHHHhc
Q 014198 344 VSS-HLGEEAQVKAEQACFLPCTDDG---------VPVIGEL--PGIKGCYVGTGHNCWGILNGPATGAALAELVMD 408 (429)
Q Consensus 344 ~~p-~l~~~~~~~~~~~g~r~~t~d~---------~p~ig~~--~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 408 (429)
++| .+.. .++.+.|+|+||.++|+ ...|-.. .+.+|++.+.|. +++.++.+|+.+++.+..
T Consensus 304 ~~~~~l~~-~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~Gg---k~Tt~r~~Ae~v~d~~~~ 376 (502)
T PRK13369 304 YFKEKLRR-EDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFGG---KITTFRKLAEHALERLKP 376 (502)
T ss_pred hhCCCCCH-hHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeCC---hHhhHHHHHHHHHHHHHH
Confidence 996 8888 88999999999998653 1122222 223789999984 799999999999999854
No 21
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.96 E-value=1.6e-27 Score=236.73 Aligned_cols=340 Identities=15% Similarity=0.091 Sum_probs=216.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCC--------cchhhhHHHHHHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGG--------PLSSLARASFNLHRS 122 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~--------~~~~l~~~~~~~~~~ 122 (429)
...+||+|||||++|+++|++|+++|++|+|||++++++|+|++++++++.+.++.. ....+..+++..+..
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er~~ 148 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEERKQ 148 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999999987643211 123345555544443
Q ss_pred HHHH---hCCCCCcCeeeeeeeE-EeecccccCCCCCc-cccCCCCCCCCCCCCCC-------CC-----ccC-ccccce
Q 014198 123 LAEE---LNGPDNYGYRALTTLS-LTVTESQQSGSKPS-NKANSLIPSWVDGPARS-------PT-----TIG-STQTTA 184 (429)
Q Consensus 123 ~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~-----~~g-~~~~~~ 184 (429)
+.+. +.....+ +....... .............. ........++++..... .. ..+ ..+.++
T Consensus 149 l~~~ap~l~~~l~~-~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg 227 (627)
T PLN02464 149 LIENAPHLCHALPI-MTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDG 227 (627)
T ss_pred HHhhChhhccccce-eeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEecCc
Confidence 3222 1111010 00000000 00000000000000 00000112333332211 11 222 345679
Q ss_pred eEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEcc-CCcEEEEEEe---CCe--EEEcCEEEEcCCCCchHHH-hhh-c
Q 014198 185 QVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGE-GGRVESVMIE---GGR--VVESDAVVLALGPWSGKFE-LLA-S 255 (429)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~-~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~~~-~~~-~ 255 (429)
++||..++..|.+.+ ++.|+++++++ |+++..++ ++++++|++. +++ .+.||.||+|+|+|+..+. +++ .
T Consensus 228 ~vdp~rl~~al~~~A-~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 228 QMNDSRLNVALACTA-ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK 306 (627)
T ss_pred EEcHHHHHHHHHHHH-HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence 999999999999999 88999999999 99998763 3667776652 233 6899999999999999998 553 2
Q ss_pred cc-ccccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHH
Q 014198 256 MF-RVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASI 334 (429)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~ 334 (429)
.. ++.+.+|..+.++... ......++.. ...++ ...++.|. +|.++ +|++++.. ....+..++++.+
T Consensus 307 ~~~~I~p~kG~hlvl~~~~--~~~~~~~i~~-~~~dg-----r~~~~~P~-~g~~l-iGtTd~~~--~~~~~~~~t~~ei 374 (627)
T PLN02464 307 AKPMICPSSGVHIVLPDYY--SPEGMGLIVP-KTKDG-----RVVFMLPW-LGRTV-AGTTDSKT--PITMLPEPHEDEI 374 (627)
T ss_pred CCCceEeeeeEEEeccccc--CCCCceEEec-CCCCC-----CEEEEEec-CCcEE-EecCCCCC--CCCCCCCCCHHHH
Confidence 33 4889999888775321 0111122222 11122 23456677 56564 57676532 1334567788999
Q ss_pred HHHHHHHHHhcc-ccCcccccceeeeeecccCCCCCceeccCCC--------CCcEEEEecCCCccchhhHHHHHHHHHH
Q 014198 335 QVLKRVARTVSS-HLGEEAQVKAEQACFLPCTDDGVPVIGELPG--------IKGCYVGTGHNCWGILNGPATGAALAEL 405 (429)
Q Consensus 335 ~~l~~~~~~~~p-~l~~~~~~~~~~~g~r~~t~d~~p~ig~~~~--------~~~~~~~~G~~~~G~~~a~~~a~~la~~ 405 (429)
+.|++.+.+++| .+.. .++.+.|+|+||.++|..|.++..+. .+|++..+|.. ++.+..+|+.+.+.
T Consensus 375 ~~Ll~~a~~~~~~~l~~-~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk---~Tt~R~mAe~~~d~ 450 (627)
T PLN02464 375 QFILDAISDYLNVKVRR-SDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITGGK---WTTYRSMAEDAVDA 450 (627)
T ss_pred HHHHHHHHHhhCCCCCh-hhEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEEEECCh---HHHHHHHHHHHHHH
Confidence 999999999998 6887 78999999999999887665544322 25666666653 89999999999999
Q ss_pred Hhc
Q 014198 406 VMD 408 (429)
Q Consensus 406 i~~ 408 (429)
+++
T Consensus 451 ~~~ 453 (627)
T PLN02464 451 AIK 453 (627)
T ss_pred HHH
Confidence 865
No 22
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.95 E-value=3.5e-26 Score=211.66 Aligned_cols=342 Identities=19% Similarity=0.220 Sum_probs=256.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC-CccccccccCCeeeeccCCCC--cchhhhHHHHHHHHHHHHH
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS-VACAASGKAGGFLALDWCDGG--PLSSLARASFNLHRSLAEE 126 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 126 (429)
.++||+|||||++|+++|++|++.+ ++|+||||.. ++..+|.+|+|.+|.++.+.. ...+++......+.++.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999998 9999999998 889999999999999864433 3677888888888888888
Q ss_pred hCCCCCcCeeeeeeeEEeecccccC-CCCCccccCCC---CCCCCCCCCCC---C----CccC--ccccceeEehHHHHH
Q 014198 127 LNGPDNYGYRALTTLSLTVTESQQS-GSKPSNKANSL---IPSWVDGPARS---P----TTIG--STQTTAQVHPQLFTK 193 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~---~----~~~g--~~~~~~~~~~~~l~~ 193 (429)
+.. .+..++.+.++.++.+.+ +.+++++.... ..+.++.+... + ...+ +.+..+.+++..++.
T Consensus 82 ~~~----~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 82 LGI----PFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred hCC----cccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHH
Confidence 875 477789999999998876 33344333222 24445544332 1 1222 468899999999999
Q ss_pred HHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeE-EEcCEEEEcCCCCchHHH-hhhcc--cccccceeeEEE
Q 014198 194 TLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRV-VESDAVVLALGPWSGKFE-LLASM--FRVSGLKAHSII 268 (429)
Q Consensus 194 ~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~-i~ad~vV~a~G~~s~~~~-~~~~~--~~~~~~~~~~~~ 268 (429)
+|.+.+ +++|+++++++ |++|++.++| +..+.+.+|++ ++|+.||+|+|.++..++ +.+.. ....|.+|+.+.
T Consensus 158 ~l~e~a-~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~ 235 (429)
T COG0579 158 ALAEEA-QANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLV 235 (429)
T ss_pred HHHHHH-HHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEE
Confidence 999999 88899999999 9999998454 55577777766 999999999999999999 44433 567788899999
Q ss_pred ecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcccc
Q 014198 269 LEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHL 348 (429)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l 348 (429)
++... .....+.++.-..+ + .++.+.++.+.-||.+. .|-.-.........+...+.+..+.+.......+|.+
T Consensus 236 ~~~~~-~~~~~~~Iy~~p~~--~--~p~~gV~~~~~idG~~l-~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~~~~ 309 (429)
T COG0579 236 LDNEV-KALLRHKIYPVPNP--G--LPGLGVHHTPTIDGSLL-FGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGMPDL 309 (429)
T ss_pred Ecccc-cccccceeecCCCC--C--CCCCcceeecccCCeEE-ECCCcccchhhhccccccccchhhhHHHhhhhhcccc
Confidence 88733 23334444433211 1 12455666677778664 5643332211122234567778888888889999988
Q ss_pred C-cccccceeeeeecc-----cCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 349 G-EEAQVKAEQACFLP-----CTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 349 ~-~~~~~~~~~~g~r~-----~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
. . ......+.|.|| ..+....++-...+.++.....|.=.+|++.+|..++.+.+++
T Consensus 310 ~~~-~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~ 372 (429)
T COG0579 310 GIK-NNVLANYAGIRPILKEPRLPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIAGGVLELL 372 (429)
T ss_pred ccc-ccchhhhheeccccccccccccceecccccCCCCceeeeeEEccccccChhHhhhHhhhc
Confidence 7 4 456678889999 4566667777776779999999999999999999999998888
No 23
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=5.6e-25 Score=207.49 Aligned_cols=335 Identities=19% Similarity=0.170 Sum_probs=227.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcc-hhhhHHHHHHHHHHHHHhCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPL-SSLARASFNLHRSLAEELNG 129 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 129 (429)
+..+||+||||||.|+.+|+.++.+|++|+|+|++++++|+|+++++++|.+.++-... ..++.+++..-+-+......
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 35799999999999999999999999999999999999999999999999988765542 22455554433333322211
Q ss_pred CCCcCeeeeeeeEEeec--ccccCC---CCCccccCC-----CCCCCCC--------CCCCCCCcc-CccccceeEehHH
Q 014198 130 PDNYGYRALTTLSLTVT--ESQQSG---SKPSNKANS-----LIPSWVD--------GPARSPTTI-GSTQTTAQVHPQL 190 (429)
Q Consensus 130 ~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~-----~~~~~~~--------~~~~~~~~~-g~~~~~~~~~~~~ 190 (429)
..+....+....+ ...... ...+..+.+ ...+.++ +........ ++...++++|+.+
T Consensus 90 ----~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaR 165 (532)
T COG0578 90 ----LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDAR 165 (532)
T ss_pred ----ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHH
Confidence 1111122222222 111100 000000001 0111122 111112333 4567899999999
Q ss_pred HHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC-----eEEEcCEEEEcCCCCchHHH-hhhcc----ccc
Q 014198 191 FTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG-----RVVESDAVVLALGPWSGKFE-LLASM----FRV 259 (429)
Q Consensus 191 l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g-----~~i~ad~vV~a~G~~s~~~~-~~~~~----~~~ 259 (429)
|+-.++..+ .+.|.++++.+ |+++..+ ++ +++|.+.|. ..++|+.||+|||+|+..+. ..+.. ..+
T Consensus 166 Lv~~~a~~A-~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~v 242 (532)
T COG0578 166 LVAANARDA-AEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGV 242 (532)
T ss_pred HHHHHHHHH-Hhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccc
Confidence 999999999 89999999999 9999988 66 889988753 36899999999999999998 44332 368
Q ss_pred ccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHH
Q 014198 260 SGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKR 339 (429)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (429)
++.+|..++++..- + ..+.++..+.. +++ ...+.|..+ .. ++|+|+.. ++.++++..+++++++.|++
T Consensus 243 r~skGsHlVv~~~~--~-~~~a~~~~~~~-d~r-----~~f~iP~~~-~~-liGTTD~~-~~~~~~~~~~~~eEidyll~ 310 (532)
T COG0578 243 RPSKGSHLVVDKKF--P-INQAVINRCRK-DGR-----IVFAIPYEG-KT-LIGTTDTD-YDGDPEDPRITEEEIDYLLD 310 (532)
T ss_pred eeccceEEEecccC--C-CCceEEeecCC-CCc-----eEEEecCCC-CE-Eeeccccc-cCCCcccCCCCHHHHHHHHH
Confidence 99999888887621 2 23445554432 332 233445543 34 67988764 33356778899999999999
Q ss_pred HHH-HhccccCcccccceeeeeecccCCCCCc---------eeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhc
Q 014198 340 VAR-TVSSHLGEEAQVKAEQACFLPCTDDGVP---------VIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMD 408 (429)
Q Consensus 340 ~~~-~~~p~l~~~~~~~~~~~g~r~~t~d~~p---------~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 408 (429)
.+. .+.|.+.. .++...|+|+||.-.|+.+ .+-...+.+|++..+|. -++..-.+||.+.+.+++
T Consensus 311 ~~~~~~~~~l~~-~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~GG---KlTTyR~maE~a~d~v~~ 385 (532)
T COG0578 311 AVNRYLAPPLTR-EDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVAGG---KLTTYRKMAEDALDAVCE 385 (532)
T ss_pred HHHhhhhccCCh-hheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEEEecc---hhHHhHHHHHHHHHHHHH
Confidence 999 55577887 8999999999998775543 22222224788888876 488888899988888754
No 24
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.93 E-value=1.8e-24 Score=212.72 Aligned_cols=312 Identities=18% Similarity=0.229 Sum_probs=217.3
Q ss_pred HHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc---chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEee
Q 014198 69 AYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP---LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTV 145 (429)
Q Consensus 69 A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (429)
|+.|+++|++|+||||++++.|+|++++|+++.++.+... ....+.....+|.++... .++..|.+.+..
T Consensus 1 ArdLa~rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~-------~~~~~g~L~va~ 73 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH-------CVEDTGGLFITL 73 (516)
T ss_pred ChhHHHCCCCEEEEeCCCcccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH-------hccCCCceEEec
Confidence 6789999999999999999999999999999987654322 233344445566655433 245667777665
Q ss_pred cccccC-CCCCccc--cCCCCCCCCCCCCCC-------CCccC-ccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EE
Q 014198 146 TESQQS-GSKPSNK--ANSLIPSWVDGPARS-------PTTIG-STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VE 213 (429)
Q Consensus 146 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~-------~~~~g-~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~ 213 (429)
...+.. ...+... ..+...++++++... ....+ ....++++||.+++..+.+.+ .+.|+++++++ |+
T Consensus 74 ~~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~~~ga~~~~dg~vdp~~l~~al~~~A-~~~Ga~i~~~t~V~ 152 (516)
T TIGR03377 74 PEDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDA-QEHGARIFTYTKVT 152 (516)
T ss_pred CcccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChhheEEEEeCCcEECHHHHHHHHHHHH-HHcCCEEEcCcEEE
Confidence 544322 1111111 123334455443321 11222 223368999999999999999 89999999999 99
Q ss_pred EEEEccCCcEEEEEEe---CC--eEEEcCEEEEcCCCCchHHH-hhhcccccccceeeEEEecCCCCCCCCCceeEeeec
Q 014198 214 RVGVGEGGRVESVMIE---GG--RVVESDAVVLALGPWSGKFE-LLASMFRVSGLKAHSIILEPKEADAITPHALFLSYY 287 (429)
Q Consensus 214 ~i~~~~~g~v~~v~~~---~g--~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (429)
++..+ ++++++|++. ++ ..++|+.||+|+|+|+..+. +.+...++.+.+++++.++... ....+..-..
T Consensus 153 ~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~~~i~p~kG~~lv~~~~~----~~~~~~~~~~ 227 (516)
T TIGR03377 153 GLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIRMFPAKGALLIMNHRI----NNTVINRCRK 227 (516)
T ss_pred EEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCCCceecceEEEEEECCcc----cccccccccC
Confidence 99987 6777777763 23 37999999999999999998 6677889999999999986432 1111111011
Q ss_pred cCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeeeeecccCCC
Q 014198 288 PAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDD 367 (429)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d 367 (429)
.. .+.++.|. ++ ..++|++.... .++++..++.+.++.+++.+.+++|.+.. .++++.|+|+||...+
T Consensus 228 ~~-------~g~~~~P~-~~-~~liGtT~~~~--~~~~~~~~~~~~v~~ll~~~~~~~P~l~~-~~i~~~~aGvRPl~~~ 295 (516)
T TIGR03377 228 PS-------DADILVPG-DT-ISIIGTTSERI--DDPDDLPVTQEEVDVLLREGAKLAPMLAQ-TRILRAFAGVRPLVAV 295 (516)
T ss_pred CC-------CCcEEEEC-CC-eEEEecCCCCC--CCCCCCCCCHHHHHHHHHHHHHhCccccc-CCEEEEEeecccccCC
Confidence 11 12355564 34 44567776532 23445678889999999999999999988 8899999999997644
Q ss_pred C-----------Cceecc--CCCCCcEEEEecCCCccchhhHHHHHHHHHHHhc
Q 014198 368 G-----------VPVIGE--LPGIKGCYVGTGHNCWGILNGPATGAALAELVMD 408 (429)
Q Consensus 368 ~-----------~p~ig~--~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 408 (429)
. ..+++. .++.+|++.++|. .++.++.+|+.+++++..
T Consensus 296 ~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GG---kltt~r~~Ae~~~d~~~~ 346 (516)
T TIGR03377 296 DDDPSGRNISRGIVLLDHAERDGLPGFITITGG---KLTTYRLMAEWATDVVCK 346 (516)
T ss_pred CCCCCccccCCCeEEeecccccCCCCeEEEecc---hHHHHHHHHHHHHHHHHH
Confidence 2 245553 2456899999993 399999999999999853
No 25
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.92 E-value=4.2e-23 Score=175.90 Aligned_cols=315 Identities=19% Similarity=0.180 Sum_probs=211.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEcCCCCccccccccCCeeeeccCCCCc---chhhhHHHHHHHHH
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKG-------AAVTLIEKSSVACAASGKAGGFLALDWCDGGP---LSSLARASFNLHRS 122 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G-------~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~---~~~l~~~~~~~~~~ 122 (429)
..+|+|||+|++|+++|+.+.+.+ .+|++++-......+|..+.|++.+....... ..++....++.+..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~ 82 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAH 82 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCCCCcHHHHHHHHHHHHHHHHH
Confidence 568999999999999999888854 67999988777788899999999997654333 35566667777777
Q ss_pred HHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCC----CCccCccccceeEehHHHHHHHHHH
Q 014198 123 LAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARS----PTTIGSTQTTAQVHPQLFTKTLLNK 198 (429)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~l~~~l~~~ 198 (429)
+...... ...+........+...+.-.+.++.... .-..+..+...++. ....|........++..++.+|.++
T Consensus 83 l~rs~~a-~~aGV~l~sg~~ls~~e~~~~~~~~w~d-iV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~ 160 (342)
T KOG3923|consen 83 LARSEEA-GEAGVCLVSGHILSDSESLDDQQRSWGD-IVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKKR 160 (342)
T ss_pred Hhccccc-cccceEEeeeeeeccCCCchhhhhhHHh-hhhhhhcCCHHHhcCCCCccccceeEEEeeccchhhhHHHHHH
Confidence 6652211 1233333333333332111101111111 11122223322222 1122445566778889999999999
Q ss_pred HHhhcCcEEEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCCCC
Q 014198 199 AVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAIT 278 (429)
Q Consensus 199 ~~~~~Gv~v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (429)
+ .+.|+++....|++++.- + + -.+|.||+|+|.|+..+. ..-.++|.+||++.++. ++.
T Consensus 161 l-~e~Gvef~~r~v~~l~E~-------~---~---~~~DVivNCtGL~a~~L~---gDd~~yPiRGqVl~V~A----pWv 219 (342)
T KOG3923|consen 161 L-TENGVEFVQRRVESLEEV-------A---R---PEYDVIVNCTGLGAGKLA---GDDDLYPIRGQVLKVDA----PWV 219 (342)
T ss_pred H-HhcCcEEEEeeeccHHHh-------c---c---CCCcEEEECCcccccccc---CCcceeeccceEEEeeC----Cce
Confidence 9 889999988778877532 1 1 257999999999999987 22238999999999886 566
Q ss_pred CceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceee
Q 014198 279 PHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQ 358 (429)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~ 358 (429)
.+.++.+. ...|++|-. +.++ +|++.. +..++.+++++....++++...+.|.|.. .+++..|
T Consensus 220 khf~~~D~----------~~ty~iP~~-~~V~-lGg~~Q----~g~w~~ei~~~D~~dIl~rc~aL~P~l~~-a~ii~E~ 282 (342)
T KOG3923|consen 220 KHFIYRDF----------SRTYIIPGT-ESVT-LGGTKQ----EGNWNLEITDEDRRDILERCCALEPSLRH-AEIIREW 282 (342)
T ss_pred eEEEEecC----------CccEEecCC-ceEE-Eccccc----cCcccCcCChhhHHHHHHHHHHhCccccc-ceehhhh
Confidence 66666542 112444433 3344 455543 23456778889999999999999999999 9999999
Q ss_pred eeecccCCCCCceeccCC-CCCc--EEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 359 ACFLPCTDDGVPVIGELP-GIKG--CYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 359 ~g~r~~t~d~~p~ig~~~-~~~~--~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
+|+||..+.-+.--...+ +.+. +++..|+||.|+++++++|...+.+++
T Consensus 283 vGlRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~ 334 (342)
T KOG3923|consen 283 VGLRPGRKQVRLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVL 334 (342)
T ss_pred hcccCCCCceeeeeeeecCCCccceeEeeccCCCCceecccchHHHHHHHHH
Confidence 999998765211111111 1233 489999999999999999998888874
No 26
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.89 E-value=4.6e-21 Score=185.22 Aligned_cols=342 Identities=17% Similarity=0.130 Sum_probs=205.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC-Ccccccc--ccCCeeeeccC---CCC----cchhh---------
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS-VACAASG--KAGGFLALDWC---DGG----PLSSL--------- 112 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~-~~~~~s~--~~~g~~~~~~~---~~~----~~~~l--------- 112 (429)
+||+||||||+|+++|++|++. |.+|+|+||.. ++.++|+ ++.|.++.... +.. ....+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~ 80 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ 80 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence 5999999999999999999997 99999999976 7777777 57777776551 111 11222
Q ss_pred hHHHHHHHHHHHHHhCCC-CCcC-eeeeeeeEEeecccccC-CCCCccccCCC----CCCC-CCCCCCC---C-------
Q 014198 113 ARASFNLHRSLAEELNGP-DNYG-YRALTTLSLTVTESQQS-GSKPSNKANSL----IPSW-VDGPARS---P------- 174 (429)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~-~~~~~~~---~------- 174 (429)
...+.++|..+.++ +.. .+.. .+.+|.+.++..+.+.. +.+.+..+... .+++ +++++.. +
T Consensus 81 ~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~ 159 (483)
T TIGR01320 81 FQVSRQFWAHLVEE-GILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRD 159 (483)
T ss_pred HHHHHHHHHHHHHc-CCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCC
Confidence 23456677666654 211 1123 33589999998877665 22222222111 2333 3433221 1
Q ss_pred --CccC--ccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEE---eCC--eEEEcCEEEEcCC
Q 014198 175 --TTIG--STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMI---EGG--RVVESDAVVLALG 244 (429)
Q Consensus 175 --~~~g--~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~---~~g--~~i~ad~vV~a~G 244 (429)
...+ +.+.++++||..++++|.+.+ ++.|+++++++ |++++.++++.+ .+.+ .++ .+++||.||+|+|
T Consensus 160 ~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a-~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG 237 (483)
T TIGR01320 160 FSEPVAANWAAEGTDVDFGALTKQLLGYL-VQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAG 237 (483)
T ss_pred CCCceEEEEeCCCEEECHHHHHHHHHHHH-HhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCC
Confidence 1122 468889999999999999999 88899999999 999987634433 3432 223 3689999999999
Q ss_pred CCchHHH-hhhcc----cccccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecC-----CCcEE-Eec
Q 014198 245 PWSGKFE-LLASM----FRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRP-----TGEVY-LCG 313 (429)
Q Consensus 245 ~~s~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~-i~g 313 (429)
+|+..+. .+|.. .++.|.+++++.++.+.........++....+ + ..++..|+. +|..+ +.|
T Consensus 238 ~~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p--~-----~p~~~Vph~Dtr~i~G~~~~~~G 310 (483)
T TIGR01320 238 GGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASV--G-----APPMSVPHLDTRVVDGKKWLLFG 310 (483)
T ss_pred cchHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCC--C-----CCCcEEecCCCccccCCEEEEEC
Confidence 9999998 55543 47789999999887553111122223322111 1 113344443 34443 233
Q ss_pred cCCC-------CCCCCCCCCCCCCHHH-------------------------HHHHHHHHHHhccccCcccccceeeeee
Q 014198 314 MSSE-------QEVPDDPETVSGDPAS-------------------------IQVLKRVARTVSSHLGEEAQVKAEQACF 361 (429)
Q Consensus 314 ~~~~-------~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~~p~l~~~~~~~~~~~g~ 361 (429)
-+-- .....+-. ...+... .....+.+++++|.+.. .++.....|+
T Consensus 311 P~A~~~~~~~reg~~~d~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~p~~~~-~d~~~~~~Gi 388 (483)
T TIGR01320 311 PYAGWSPKFLKHGSILDLP-LSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFYPEAID-SDWELIVAGQ 388 (483)
T ss_pred cCCCcchHhhcCCchhHHh-hcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhCCCCCH-HHcEEccCce
Confidence 2211 00000000 0000000 11123446778898887 6777788999
Q ss_pred ccc--CCC-----CCceecc--CCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 362 LPC--TDD-----GVPVIGE--LPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 362 r~~--t~d-----~~p~ig~--~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
|+- ..| +....|. +...++.+++.-.-+.|++.+..+++.+.+...
T Consensus 389 R~Q~i~~~~~~~~g~l~~g~~~i~~~~~~~~~l~~~SPgaTss~~i~~~v~~~~~ 443 (483)
T TIGR01320 389 RVQVIKKDPEKGGGVLEFGTTLIADADGSIAGLLGASPGASTAVSIMLDLLERCF 443 (483)
T ss_pred EEEEEecCCCCCcCEEecCCeEEECCCCeEEEecCCCchHHhhHHHHHHHHHHHh
Confidence 985 333 1122221 123366666544458999999999998887663
No 27
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.88 E-value=3e-21 Score=186.52 Aligned_cols=343 Identities=15% Similarity=0.130 Sum_probs=209.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC-Ccccccc--ccCCeeeeccC---CCC----cchhhh-----
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS-VACAASG--KAGGFLALDWC---DGG----PLSSLA----- 113 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~-~~~~~s~--~~~g~~~~~~~---~~~----~~~~l~----- 113 (429)
+..+||+|||||++|+++|++|++. |++|+||||.. ++.++|+ +++|.++...+ +.. ....+.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~ 82 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI 82 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence 3468999999999999999999984 78999999987 5666665 67777776531 111 111211
Q ss_pred ----HHHHHHHHHHHHHhCCC-CCc-CeeeeeeeEEeecccccC-CCCCccccC--C--CCCCCC-CCCCCC---C----
Q 014198 114 ----RASFNLHRSLAEELNGP-DNY-GYRALTTLSLTVTESQQS-GSKPSNKAN--S--LIPSWV-DGPARS---P---- 174 (429)
Q Consensus 114 ----~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~--~~~~~~-~~~~~~---~---- 174 (429)
..+.++|..+.+. +.. ... .+..+|.+.+..++.+.+ +.++...+. + ..++++ +.+... +
T Consensus 83 ~~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~~ 161 (494)
T PRK05257 83 NEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMME 161 (494)
T ss_pred HHHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCccccc
Confidence 4566777666554 221 122 236888998888776554 212221111 1 123442 332211 1
Q ss_pred -----CccC--ccccceeEehHHHHHHHHHHHHhhcC-cEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEE
Q 014198 175 -----TTIG--STQTTAQVHPQLFTKTLLNKAVNDYG-LEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVV 240 (429)
Q Consensus 175 -----~~~g--~~~~~~~~~~~~l~~~l~~~~~~~~G-v~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV 240 (429)
...+ +.+.++.+|+..+++.|.+.+ ++.| +++++++ |+++..++++.+ .+.+. ++. +++|++||
T Consensus 162 ~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a-~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VV 239 (494)
T PRK05257 162 GRDPSQKVAATRIEIGTDVNFGALTRQLVGYL-QKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVF 239 (494)
T ss_pred CCCCCcceeEEEcCCceEECHHHHHHHHHHHH-HhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEE
Confidence 1122 467889999999999999999 7766 8999999 999998635543 34432 342 69999999
Q ss_pred EcCCCCchHHH-hhhcc----cccccceeeEEEecCCCCCCCCCce--eEeeeccCCCCCCCCCCCceEecCCCcEEEec
Q 014198 241 LALGPWSGKFE-LLASM----FRVSGLKAHSIILEPKEADAITPHA--LFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCG 313 (429)
Q Consensus 241 ~a~G~~s~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g 313 (429)
+|+|+|+..++ ..+.. .++.|.+++++.++.+. .+..+. ++.... . ...++..|+.|+.++ .|
T Consensus 240 vaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~--~v~~~~~kvY~~~~--~-----~~P~~~vPh~dtr~i-~G 309 (494)
T PRK05257 240 IGAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPE--VVAQHHAKVYGKAS--V-----GAPPMSVPHLDTRVI-DG 309 (494)
T ss_pred ECCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHH--HHhcCCeEEecCCC--C-----CCCCCCCCCCCCcEE-CC
Confidence 99999999998 55544 47889999999988653 222222 222210 0 112233444443332 22
Q ss_pred c-------CCC------CCCC--------CCCCC---C---CCCH----HH-------HHHHHHHHHHhccccCcccccc
Q 014198 314 M-------SSE------QEVP--------DDPET---V---SGDP----AS-------IQVLKRVARTVSSHLGEEAQVK 355 (429)
Q Consensus 314 ~-------~~~------~~~~--------~~~~~---~---~~~~----~~-------~~~l~~~~~~~~p~l~~~~~~~ 355 (429)
. +-- .... ....- . ..+. -. -....+.+++++|.+.. .++.
T Consensus 310 ~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~d~~ 388 (494)
T PRK05257 310 KRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFYPNAKP-EDWE 388 (494)
T ss_pred ceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhCCCCCH-HHce
Confidence 1 100 0000 00000 0 0000 00 12344557788898887 6677
Q ss_pred eeeeeeccc--CCC----CCceecc-C-CCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 356 AEQACFLPC--TDD----GVPVIGE-L-PGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 356 ~~~~g~r~~--t~d----~~p~ig~-~-~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
....|.|+- ..| +..+.|. + ...++.+++.=.-+.|.+.+..+++.+.+.+.
T Consensus 389 ~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~~SPgat~s~~i~~~v~~~~~ 448 (494)
T PRK05257 389 LIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADGSIAALLGASPGASTAVPIMLEVLEKCF 448 (494)
T ss_pred EcCCceEeEEEccCCCCCCEEECCcEEEecCCCeEEEEcCCCchHHHHHHHHHHHHHHhC
Confidence 778999985 344 5566663 2 34467665555558999999999999998773
No 28
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.88 E-value=3.5e-21 Score=184.45 Aligned_cols=346 Identities=13% Similarity=0.059 Sum_probs=208.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcC-CCCccccccc--cCCeee-----eccCCCC--cchhhh-----
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEK-SSVACAASGK--AGGFLA-----LDWCDGG--PLSSLA----- 113 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~-~~~~~~~s~~--~~g~~~-----~~~~~~~--~~~~l~----- 113 (429)
...+||+||||||+|+++|++|++. |.+|+|+|| +.++..+|++ |+|.++ ..|.... ....+.
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i 83 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI 83 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence 3467999999999999999999998 899999999 6688888855 444444 4443322 123333
Q ss_pred ----HHHHHHHHHHHHHhCCCC-CcCeeeeeeeEEeecccccC-CCCCccccCC--C--CCCCC-CCCCCC---C-----
Q 014198 114 ----RASFNLHRSLAEELNGPD-NYGYRALTTLSLTVTESQQS-GSKPSNKANS--L--IPSWV-DGPARS---P----- 174 (429)
Q Consensus 114 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~--~~~~~-~~~~~~---~----- 174 (429)
..+.++|..+...-.... .-.+...+.+.+...+.+.+ +.+++..+.. . .++++ +.++.. +
T Consensus 84 ~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~~ 163 (497)
T PRK13339 84 NEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMPG 163 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcccCC
Confidence 556677766655211111 12267788888886666554 3333333222 2 45666 333221 1
Q ss_pred ----CccC--ccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEE---EeCCe--EEEcCEEEEc
Q 014198 175 ----TTIG--STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVM---IEGGR--VVESDAVVLA 242 (429)
Q Consensus 175 ----~~~g--~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~---~~~g~--~i~ad~vV~a 242 (429)
...+ +.+.++.+|+..++++|.+.+.+..|+++++++ |+++..++++.+ .++ +.++. +++||.||+|
T Consensus 164 r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 164 REANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred CCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEEC
Confidence 1122 467889999999999999999334589999999 999987634443 343 33342 6899999999
Q ss_pred CCCCchHHH-hhhcc----cccccceeeEEEecCCCCCCCCCce--eEeeeccCCCCCCCCCCCceEecCCCcEEE----
Q 014198 243 LGPWSGKFE-LLASM----FRVSGLKAHSIILEPKEADAITPHA--LFLSYYPAQGEGGKPMDPEVYPRPTGEVYL---- 311 (429)
Q Consensus 243 ~G~~s~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i---- 311 (429)
+|+|+..++ .+|.. .++.|.+|+++.++.+. .+..+. ++.... .+ ..++..|+.|+.++.
T Consensus 243 AGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~--~v~~h~~~VY~v~~--~~-----~P~~~VPhlDtr~i~G~~~ 313 (497)
T PRK13339 243 AGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPE--VVKQHQAKVYSKEP--VG-----TPPMTVPHLDTRYIDGKRS 313 (497)
T ss_pred CCcchHHHHHHcCCCccCCCceEeeeEEEEEecCHH--HhhhcCceEeCCCC--CC-----CCCCcCCCCCCcEEcCcee
Confidence 999999998 55543 58899999999988643 232222 222110 00 112333444333221
Q ss_pred --eccCCCC------CCC-------CCCCCC-------CCC----HHH-------HHHHHHHHHHhccccCcccccceee
Q 014198 312 --CGMSSEQ------EVP-------DDPETV-------SGD----PAS-------IQVLKRVARTVSSHLGEEAQVKAEQ 358 (429)
Q Consensus 312 --~g~~~~~------~~~-------~~~~~~-------~~~----~~~-------~~~l~~~~~~~~p~l~~~~~~~~~~ 358 (429)
.|-+--. ... ...... ..+ .-. -....+.+++++|.+.. .++....
T Consensus 314 v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~P~~~~-~D~~~~~ 392 (497)
T PRK13339 314 LLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFYPEARA-EDWRLYT 392 (497)
T ss_pred EEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhCCCCCH-HHeeEcC
Confidence 1111000 000 000000 000 000 12344567788898887 6777778
Q ss_pred eeeccc--CCCCCce-----ecc--CCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 359 ACFLPC--TDDGVPV-----IGE--LPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 359 ~g~r~~--t~d~~p~-----ig~--~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
+|+|+- ..|+..+ .|. +...++.+++.=.-+.|++.+..+|+.|++.+.
T Consensus 393 aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~~s~~~lna~SPgATssl~ia~~v~~~~f 450 (497)
T PRK13339 393 AGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHSVIALLGESPGASTSVSVALEVLERNF 450 (497)
T ss_pred CceEEEEEeCCCCccCCEEEecceeeecCCCeEEEecCCCcHHHhhHHHHHHHHHHHh
Confidence 999984 3444332 221 123366444444448999999999999988764
No 29
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.87 E-value=1e-20 Score=182.01 Aligned_cols=217 Identities=15% Similarity=0.143 Sum_probs=154.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC-Cccccc--cccCCeeeeccC---CCCcchhhhHHHHHHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS-VACAAS--GKAGGFLALDWC---DGGPLSSLARASFNLHRS 122 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~-~~~~~s--~~~~g~~~~~~~---~~~~~~~l~~~~~~~~~~ 122 (429)
+..+||+|||||++|+++|++|++.+ .+|+||||.. ++.++| .++++.++.+.. +......++.++.+++.+
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~ 122 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRN 122 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999963 6999999986 565555 556666665432 222355667777888888
Q ss_pred HHHHhCCCC-CcCeeeeeeeEEeecccccC-CCCCcccc--CCCCCCCCCCCCCC---CC------------ccC--ccc
Q 014198 123 LAEELNGPD-NYGYRALTTLSLTVTESQQS-GSKPSNKA--NSLIPSWVDGPARS---PT------------TIG--STQ 181 (429)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~---~~------------~~g--~~~ 181 (429)
+..++.... ...+..+|.+.+...+.+.+ +.++.+.+ ....+++++.++.. +. ..+ +.+
T Consensus 123 ~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p 202 (497)
T PTZ00383 123 YLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVP 202 (497)
T ss_pred HHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccceEEEEeC
Confidence 877654321 34467789999887776654 22222211 23345566554332 11 112 245
Q ss_pred cc-eeEehHHHHHHHHHHHHhh----cC--cEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-h
Q 014198 182 TT-AQVHPQLFTKTLLNKAVND----YG--LEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-L 252 (429)
Q Consensus 182 ~~-~~~~~~~l~~~l~~~~~~~----~G--v~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~ 252 (429)
.. +.+|+..+++.|.+.+ ++ .| +++++++ |++|..+ ++.++.|.+.+| +++||.||+|+|+|+..++ .
T Consensus 203 ~~g~~Vd~~~L~~al~~~a-~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~ 279 (497)
T PTZ00383 203 NELTTVDYQKLSESFVKHA-RRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQK 279 (497)
T ss_pred CCCEEECHHHHHHHHHHHH-HhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhHHHHHHH
Confidence 45 6899999999999999 77 67 7899999 9999986 455667888655 7999999999999999998 4
Q ss_pred hh--cccccccceeeEEEec
Q 014198 253 LA--SMFRVSGLKAHSIILE 270 (429)
Q Consensus 253 ~~--~~~~~~~~~~~~~~~~ 270 (429)
.| ...++.|.+|+++..+
T Consensus 280 ~Gi~~~~~i~Pv~G~~~~~~ 299 (497)
T PTZ00383 280 MGYGLEYSCLPVAGSFYFSG 299 (497)
T ss_pred hCCCCCCCEEecCceEEEcC
Confidence 44 4677888888877664
No 30
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.87 E-value=3.2e-21 Score=176.84 Aligned_cols=335 Identities=16% Similarity=0.116 Sum_probs=214.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------chhhhHHHHHHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------LSSLARASFNLHRS 122 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------~~~l~~~~~~~~~~ 122 (429)
..++||+|||||-+|.-+|+..+-+|+||.|||++++++|+|+.++-++|.+-++-+. ..++..+++..-..
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999987554322 22333333332222
Q ss_pred HHH---HhCCCCCc------------CeeeeeeeEEeecccccCCCCCccc-cCCCCCCCCCCCCCCCCccC-cccccee
Q 014198 123 LAE---ELNGPDNY------------GYRALTTLSLTVTESQQSGSKPSNK-ANSLIPSWVDGPARSPTTIG-STQTTAQ 185 (429)
Q Consensus 123 ~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~~~ 185 (429)
+.+ .+....++ .|-.+..+.+...........+..+ ..-+.++.+.. ....| ....+|+
T Consensus 145 lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~----~~L~Ga~VYyDGQ 220 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRK----DNLKGAMVYYDGQ 220 (680)
T ss_pred HhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccc----cCceeEEEEecCC
Confidence 222 12221111 1111222222221111110000000 01111122222 12223 2467888
Q ss_pred EehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC---C--eEEEcCEEEEcCCCCchHHHhh-hcc--
Q 014198 186 VHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG---G--RVVESDAVVLALGPWSGKFELL-ASM-- 256 (429)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~---g--~~i~ad~vV~a~G~~s~~~~~~-~~~-- 256 (429)
.|-.++.-.+.-.+ .++|..+.... |.++.+++++++.+++..| | -.|+|+.||+|||++++.+... ...
T Consensus 221 ~nDaRmnl~vAlTA-~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~ 299 (680)
T KOG0042|consen 221 HNDARMNLAVALTA-ARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAK 299 (680)
T ss_pred CchHHHHHHHHHHH-HhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccC
Confidence 88888888888888 78899999999 9999988788887777654 3 3689999999999999999832 221
Q ss_pred cccccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHH
Q 014198 257 FRVSGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQV 336 (429)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (429)
.-+.|..+..+.++.- ..+..+=+++...++| --+|+.|+-...|.|+++... ..+.++.+++++++.
T Consensus 300 ~i~~pSsGvHIVlP~y---Y~P~~mGlldP~TsDg-------RViFflPWqg~TIaGTTD~pt--~v~~~P~PtE~dIqf 367 (680)
T KOG0042|consen 300 PICVPSSGVHIVLPGY---YCPENMGLLDPKTSDG-------RVIFFLPWQGKTIAGTTDIPT--SVTHSPTPTEDDIQF 367 (680)
T ss_pred ceeccCCceeEEcccc---cCCcccccccCCCCCC-------cEEEEeccCCceeeccCCCCC--CCCCCCCCCHHHHHH
Confidence 1123444444444321 2233333444443444 245555665566789887652 334567899999999
Q ss_pred HHHHHHHhcc---ccCcccccceeeeeecccCCCCCc-----------eeccCCCCCcEEEEecCCCccchhhHHHHHHH
Q 014198 337 LKRVARTVSS---HLGEEAQVKAEQACFLPCTDDGVP-----------VIGELPGIKGCYVGTGHNCWGILNGPATGAAL 402 (429)
Q Consensus 337 l~~~~~~~~p---~l~~~~~~~~~~~g~r~~t~d~~p-----------~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~l 402 (429)
+++.++.++. .+.. .++...|+|+||...|-.. +|..-+ +|++..+|. -++..-.+||.-
T Consensus 368 IL~ev~~yl~~~~~VrR-~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~--~gLiTIaGG---KWTTyR~MAEeT 441 (680)
T KOG0042|consen 368 ILKEVQHYLSFDVEVRR-EDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSP--SGLITIAGG---KWTTYRHMAEET 441 (680)
T ss_pred HHHHHHHhhCCCcccch-hhhHHHhhCCcccccCCCccccchhhhhhceEEecC--CCeEEEecC---cchhHHHHHHHH
Confidence 9999999874 3555 7899999999999877532 333223 899999886 488888899877
Q ss_pred HHHHhc
Q 014198 403 AELVMD 408 (429)
Q Consensus 403 a~~i~~ 408 (429)
.+.+.+
T Consensus 442 Vd~aI~ 447 (680)
T KOG0042|consen 442 VDAAIK 447 (680)
T ss_pred HHHHHH
Confidence 776544
No 31
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.85 E-value=7.4e-20 Score=157.22 Aligned_cols=345 Identities=14% Similarity=0.122 Sum_probs=231.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC-CccccccccCCeeeeccCCCC--cchhhhHHHHHHHHHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS-VACAASGKAGGFLALDWCDGG--PLSSLARASFNLHRSLAE 125 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~--~~~~l~~~~~~~~~~~~~ 125 (429)
...+|.||||||++|++.|.+|.-+ +.+|.|+|+.. ++--.|++++|.|+.++.+.. -..+++.+..++.-++++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 4579999999999999999999987 89999999998 888889999999999865543 367899999988877777
Q ss_pred HhCCCCCcCeeeeeeeEEeecccccCCC----CCccccCCCCCCCCCCCCCC---CCccC----ccccceeEehHHHHHH
Q 014198 126 ELNGPDNYGYRALTTLSLTVTESQQSGS----KPSNKANSLIPSWVDGPARS---PTTIG----STQTTAQVHPQLFTKT 194 (429)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~g----~~~~~~~~~~~~l~~~ 194 (429)
+..+ .|+++|.+.++.+..+.-.. .+...-.-.+++.++..+.. +.+-| ..++.|.+|-..++..
T Consensus 126 e~~I----pyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls 201 (453)
T KOG2665|consen 126 EKKI----PYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS 201 (453)
T ss_pred hcCC----ChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence 6654 58999999999888765411 11111123344455554433 22222 4789999999999999
Q ss_pred HHHHHHhhcCcEEEEce-EEEEEEccCC---cEEEEEEeCCeEEEcCEEEEcCCCCchHHH---hhhcccccccceeeEE
Q 014198 195 LLNKAVNDYGLEVVIGK-VERVGVGEGG---RVESVMIEGGRVVESDAVVLALGPWSGKFE---LLASMFRVSGLKAHSI 267 (429)
Q Consensus 195 l~~~~~~~~Gv~v~~~~-v~~i~~~~~g---~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~---~~~~~~~~~~~~~~~~ 267 (429)
+.+.+ +..|.++.++- +..+.++.++ .-..|.-..+++++.+.||-|+|-.++... .+.....+.+.++..+
T Consensus 202 ~~edF-~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~yl 280 (453)
T KOG2665|consen 202 FGEDF-DFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYL 280 (453)
T ss_pred HHHHH-HHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhh
Confidence 99999 88999999999 9999876332 112233233578999999999999998887 2333334556666665
Q ss_pred EecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccC--------CC-CCC-----------------C
Q 014198 268 ILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMS--------SE-QEV-----------------P 321 (429)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~--------~~-~~~-----------------~ 321 (429)
.+.+... ...+..++. .++.+ ++..+....|+-||.+++.-.. +. .++ .
T Consensus 281 ll~~ek~-h~vk~niyP---vpd~R-FpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~ 355 (453)
T KOG2665|consen 281 LLKPEKL-HLVKGNIYP---VPDPR-FPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLA 355 (453)
T ss_pred hcChHHh-ccccCceee---CCCCC-CccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHH
Confidence 5543321 111222211 11111 1334445556666665532100 00 000 0
Q ss_pred CCCCCCCCCHHHHHHHH----HHHHHhccccCcccccceeeeeecccCCCC------Cceec--cCCCCCcEEEEecCCC
Q 014198 322 DDPETVSGDPASIQVLK----RVARTVSSHLGEEAQVKAEQACFLPCTDDG------VPVIG--ELPGIKGCYVGTGHNC 389 (429)
Q Consensus 322 ~~~~~~~~~~~~~~~l~----~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~------~p~ig--~~~~~~~~~~~~G~~~ 389 (429)
...++...++..-+..+ ..+++++|+++. .++.+..+|+|.-.-|+ .+++. .-...+++.++-+.-+
T Consensus 356 ~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~-~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapS 434 (453)
T KOG2665|consen 356 SKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKD-SDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPS 434 (453)
T ss_pred HhhcCcccchHhhhhhhhhhhHHHHHhCccccc-cccccCcccccchhccCCCCCchheEEecCccccccceEEecCCCC
Confidence 11123334444433333 778899999999 88999999999543332 12222 1123589999999999
Q ss_pred ccchhhHHHHHHHHHHH
Q 014198 390 WGILNGPATGAALAELV 406 (429)
Q Consensus 390 ~G~~~a~~~a~~la~~i 406 (429)
.|.+.+.++|+++|+.+
T Consensus 435 PgaTSSlAIa~mIa~k~ 451 (453)
T KOG2665|consen 435 PGATSSLAIAKMIADKF 451 (453)
T ss_pred ccchhhHHHHHHHHHHh
Confidence 99999999999999876
No 32
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.76 E-value=2.8e-16 Score=144.31 Aligned_cols=283 Identities=20% Similarity=0.180 Sum_probs=149.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNY 133 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (429)
+||+|||||++|+++|+.|++.|.+|+|+||...... ...+..+.+ ...+.+........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~-------------~~~~~l~~~~~~~~----- 60 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY--KPCGGALSP-------------RVLEELDLPLELIV----- 60 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc--ccccCccCH-------------hHHHHhcCCchhhh-----
Confidence 5999999999999999999999999999999973221 111111111 01111111000000
Q ss_pred CeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-E
Q 014198 134 GYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-V 212 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v 212 (429)
........... . ...... .........+++..+.+.|.+.+ .+.|+++++++ |
T Consensus 61 -~~~~~~~~~~~-~-------------~~~~~~----------~~~~~~~~~i~r~~l~~~l~~~~-~~~gv~~~~~~~v 114 (295)
T TIGR02032 61 -NLVRGARFFSP-N-------------GDSVEI----------PIETELAYVIDRDAFDEQLAERA-QEAGAELRLGTTV 114 (295)
T ss_pred -hheeeEEEEcC-C-------------CcEEEe----------ccCCCcEEEEEHHHHHHHHHHHH-HHcCCEEEeCcEE
Confidence 00000000000 0 000000 00013456788999999999999 88899999999 9
Q ss_pred EEEEEccCCcEEEEEEe-CCeEEEcCEEEEcCCCCchHHHhhhcccc-cccceeeEEEecCCCCCCCCCc--eeEeeecc
Q 014198 213 ERVGVGEGGRVESVMIE-GGRVVESDAVVLALGPWSGKFELLASMFR-VSGLKAHSIILEPKEADAITPH--ALFLSYYP 288 (429)
Q Consensus 213 ~~i~~~~~g~v~~v~~~-~g~~i~ad~vV~a~G~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 288 (429)
+++..+ ++.+. +.+. ++.++++|.||+|+|.++.....++.... .....+....++.+.. ..... .++.....
T Consensus 115 ~~~~~~-~~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (295)
T TIGR02032 115 LDVEIH-DDRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELGVAARAEVEMPDE-EVDEDFVEVYIDRGI 191 (295)
T ss_pred eeEEEe-CCEEE-EEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCcceeeEEEEEEecCCc-ccCcceEEEEcCCCc
Confidence 999877 44432 3333 34689999999999999864434433221 1111122223332210 11122 22222211
Q ss_pred CCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeeeeecccCCC-
Q 014198 289 AQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACFLPCTDD- 367 (429)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d- 367 (429)
.. ....+++|..++.+.+ +.+.... . +....++.++.+.+.+|.+.+ .++...+.+..|....
T Consensus 192 ~~-----~~~~~~~P~~~~~~~v-~~~~~~~-----~----~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 255 (295)
T TIGR02032 192 SP-----GGYGWVFPKGDGTANV-GVGSRSA-----E----EGEDLKKYLKDFLARRPELKD-AETVEVIGAPIPIGRPD 255 (295)
T ss_pred CC-----CceEEEEeCCCCeEEE-eeeeccC-----C----CCCCHHHHHHHHHHhCccccc-CcEEeeeceeeccCCCC
Confidence 11 1234577887775543 3222211 0 112333344444455676665 5555556655555322
Q ss_pred ------CCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 368 ------GVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 368 ------~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
+..++|.. ......+.|+|+.+|...|..+++.|
T Consensus 256 ~~~~~~~v~liGDA-----A~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 256 DKTVRGNVLLVGDA-----AGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CccccCCEEEEecc-----cCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 22233422 12333477889999999999888653
No 33
>PRK06185 hypothetical protein; Provisional
Probab=99.75 E-value=2.8e-16 Score=150.98 Aligned_cols=298 Identities=17% Similarity=0.175 Sum_probs=158.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
..++||+|||||++|+++|+.|++.|++|+|||+.+.... ..+ + ..+...+.++++++ +..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~-~~r-~-------------~~l~~~s~~~L~~l----G~~ 64 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR-DFR-G-------------DTVHPSTLELMDEL----GLL 64 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-ccc-C-------------ceeChhHHHHHHHc----CCh
Confidence 3568999999999999999999999999999999862110 001 0 11112222333332 111
Q ss_pred CC---cCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEE
Q 014198 131 DN---YGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEV 207 (429)
Q Consensus 131 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v 207 (429)
.. ........+.+...... ...++-.... ...+....+....+.+.|.+.+....|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i 126 (407)
T PRK06185 65 ERFLELPHQKVRTLRFEIGGRT--------------VTLADFSRLP----TPYPYIAMMPQWDFLDFLAEEASAYPNFTL 126 (407)
T ss_pred hHHhhcccceeeeEEEEECCeE--------------EEecchhhcC----CCCCcEEEeehHHHHHHHHHHHhhCCCcEE
Confidence 00 00111111111111000 0000000000 001233457778888999988833458999
Q ss_pred EEce-EEEEEEccCCcEEEEEEe--CC-eEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCCCCCceeE
Q 014198 208 VIGK-VERVGVGEGGRVESVMIE--GG-RVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALF 283 (429)
Q Consensus 208 ~~~~-v~~i~~~~~g~v~~v~~~--~g-~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (429)
++++ |+++..+ ++.+.+|.+. ++ .+++||.||.|+|.+|.....++...+..+.....+.+..+.. .......+
T Consensus 127 ~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 204 (407)
T PRK06185 127 RMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPRE-PDDPESLM 204 (407)
T ss_pred EeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCC-CCCCcccc
Confidence 9999 9999887 6666555543 45 3799999999999999755466666555555555554443221 11111111
Q ss_pred eeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeee----
Q 014198 284 LSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQA---- 359 (429)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~---- 359 (429)
.+... .....++|.. +... ++.+.... ..........+.+.+.+.+.+|.+.........|.
T Consensus 205 -~~~~~------~g~~~llP~~-~~~~-i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 270 (407)
T PRK06185 205 -GRFGP------GQGLIMIDRG-DYWQ-CGYVIPKG-----GYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKL 270 (407)
T ss_pred -eEecC------CcEEEEEcCC-CeEE-EEEEecCC-----CchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEE
Confidence 11111 1122344554 4433 33332211 11112333456666677676665432000011111
Q ss_pred ------eecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 360 ------CFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 360 ------g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
.......++..++|.. .+....++|+|+.++.--+..+++.+
T Consensus 271 ~~l~~~~~~~~~~~rv~LvGDA-----Ah~~~P~~GqG~nlgl~Da~~La~~l 318 (407)
T PRK06185 271 LDVRVDRLRRWHRPGLLCIGDA-----AHAMSPVGGVGINLAIQDAVAAANIL 318 (407)
T ss_pred EEEeccccccccCCCeEEEecc-----ccccCcccccchhHHHHHHHHHHHHH
Confidence 1122355677788855 46777888999999997766666666
No 34
>PLN02697 lycopene epsilon cyclase
Probab=99.75 E-value=7e-16 Score=149.50 Aligned_cols=290 Identities=18% Similarity=0.199 Sum_probs=155.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
...+||+|||||++|+++|..|++.|++|+|||+..+.... .|+ |.. ..+.+.+ .+....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n----~Gv----W~~-------~l~~lgl-~~~i~~---- 165 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN----YGV----WED-------EFKDLGL-EDCIEH---- 165 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc----ccc----chh-------HHHhcCc-HHHHHh----
Confidence 34689999999999999999999999999999986421111 111 100 0000000 000000
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
.| .+...+..+.. ..-.....+.+++..+.+.|.+.+ .+.|+++ .+
T Consensus 166 -~w----~~~~v~~~~~~---------------------------~~~~~~~Yg~V~R~~L~~~Ll~~a-~~~GV~~-~~ 211 (529)
T PLN02697 166 -VW----RDTIVYLDDDK---------------------------PIMIGRAYGRVSRTLLHEELLRRC-VESGVSY-LS 211 (529)
T ss_pred -hc----CCcEEEecCCc---------------------------eeeccCcccEEcHHHHHHHHHHHH-HhcCCEE-Ee
Confidence 00 00000000000 000012345789999999999999 7889998 55
Q ss_pred e-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhh---hcccccccceeeEEEecCCCCCCCCCceeEeee
Q 014198 211 K-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELL---ASMFRVSGLKAHSIILEPKEADAITPHALFLSY 286 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (429)
+ |+++..+ ++.+..+.+.++.+++|+.||.|+|.++..+... +...+.+...++.+.+..+.. . ....+++++
T Consensus 212 ~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~-d-~~~~vlMD~ 288 (529)
T PLN02697 212 SKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVENNPY-D-PSLMVFMDY 288 (529)
T ss_pred eEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecCCCC-C-cchheeecc
Confidence 6 9999876 4444445566778899999999999999655421 122345556677776654321 1 223566664
Q ss_pred ccC---CC---CCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHhccccCcccccceeee
Q 014198 287 YPA---QG---EGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASI-QVLKRVARTVSSHLGEEAQVKAEQA 359 (429)
Q Consensus 287 ~~~---~~---~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~p~l~~~~~~~~~~~ 359 (429)
... .. ....+...|+.|..++.+.+=++.... ....+.+.+ +.|.+.+.+. .+.. .++.+.-.
T Consensus 289 r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~-------~~~l~~~~l~~~L~~~l~~~--Gi~~-~~i~~~E~ 358 (529)
T PLN02697 289 RDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLAS-------KDAMPFDLLKKRLMSRLETM--GIRI-LKTYEEEW 358 (529)
T ss_pred ccccccccccccCCCceEEEEeecCCCeEEEEEeeecc-------CCCCCHHHHHHHHHHHHHhC--CCCc-ceEEEEEe
Confidence 411 00 000123456667777666542432110 011222333 4555555543 3443 45667777
Q ss_pred eecccCC------CCCceeccCCCCCcEEEEecCC-CccchhhHHHHHHHHHHHhcC
Q 014198 360 CFLPCTD------DGVPVIGELPGIKGCYVGTGHN-CWGILNGPATGAALAELVMDG 409 (429)
Q Consensus 360 g~r~~t~------d~~p~ig~~~~~~~~~~~~G~~-~~G~~~a~~~a~~la~~i~~g 409 (429)
|..|+.. ++...+|... .-+.=++|++ ..++..|+.+|+.+++.+..+
T Consensus 359 g~iPm~g~~~~~~~~vl~vG~AA--G~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~ 413 (529)
T PLN02697 359 SYIPVGGSLPNTEQKNLAFGAAA--SMVHPATGYSVVRSLSEAPKYASVIARILKNV 413 (529)
T ss_pred eeecCCCCCcccCCCeeEeehhh--cCCCCchhhhHHHHHHhHHHHHHHHHHHhhCC
Confidence 8888742 2222333221 0111122221 123377888888888888433
No 35
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.74 E-value=2e-16 Score=151.16 Aligned_cols=300 Identities=17% Similarity=0.172 Sum_probs=155.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc-ccccccCCeeeeccCCCCcchhhhHHHHH------HHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC-AASGKAGGFLALDWCDGGPLSSLARASFN------LHRSL 123 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~-~~s~~~~g~~~~~~~~~~~~~~l~~~~~~------~~~~~ 123 (429)
...+||+|||||++|+++|+.|+++|++|+|||+.+... ..+.. + .+. ..+...+.+ +|+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~--~-~r~--------~~l~~~~~~~l~~lGl~~~~ 72 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQP--D-LRV--------YAFAADNAALLDRLGVWPAV 72 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCC--C-CEE--------EEecHHHHHHHHHCCchhhh
Confidence 346899999999999999999999999999999987321 11110 0 000 011122223 33333
Q ss_pred HHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhc
Q 014198 124 AEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDY 203 (429)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~ 203 (429)
.+.... .+.. ..+...... .... ++.. ..+.......++...+.+.|.+.+ ++.
T Consensus 73 ~~~~~~----~~~~---~~~~~~~~~------------~~~~-~~~~-----~~~~~~~~~~v~~~~l~~~L~~~~-~~~ 126 (392)
T PRK08773 73 RAARAQ----PYRR---MRVWDAGGG------------GELG-FDAD-----TLGREQLGWIVENDLLVDRLWAAL-HAA 126 (392)
T ss_pred hHhhCC----cccE---EEEEeCCCC------------ceEE-echh-----ccCCCcCEEEEEhHHHHHHHHHHH-HhC
Confidence 221111 0111 111000000 0000 0000 001112235688889999999999 788
Q ss_pred CcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccccc--ccceeeEEEecCCCCCCCCCc
Q 014198 204 GLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRV--SGLKAHSIILEPKEADAITPH 280 (429)
Q Consensus 204 Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 280 (429)
|+++++++ |++++.+ ++.+ .+++.++.++++|.||.|+|.++.....++...+. +...+....++... +. ..
T Consensus 127 gv~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~--~~-~~ 201 (392)
T PRK08773 127 GVQLHCPARVVALEQD-ADRV-RLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEH--PH-QA 201 (392)
T ss_pred CCEEEcCCeEEEEEec-CCeE-EEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccC--CC-CC
Confidence 99999999 9999876 4444 36777778899999999999999543355544332 23334444443322 11 11
Q ss_pred eeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeee-
Q 014198 281 ALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQA- 359 (429)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~- 359 (429)
..+..+ .. .....++|.+++...++ ....... .........++..+.+.+.+...++.+.. ......|.
T Consensus 202 ~~~~~~-~~------~g~~~~lP~~~~~~~~~-w~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l 271 (392)
T PRK08773 202 TAWQRF-LP------TGPLALLPFADGRSSIV-WTLPDAE-AERVLALDEAAFSRELTQAFAARLGEVRV-ASPRTAFPL 271 (392)
T ss_pred EEEEEe-CC------CCcEEEEECCCCceEEE-EECCHHH-HHHHHcCCHHHHHHHHHHHHhhhhcCeEe-cCCccEeec
Confidence 111111 11 12345778776654332 1111100 00000011123334555554444332221 00000110
Q ss_pred ---eecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 360 ---CFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 360 ---g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
....+..++..++|.. .+....+.|+|+.+|..-|..|++.+.
T Consensus 272 ~~~~~~~~~~~rv~LiGDA-----AH~~~P~~GqG~n~al~Da~~La~~L~ 317 (392)
T PRK08773 272 RRQLVQQYVSGRVLTLGDA-----AHVVHPLAGQGVNLGLRDVAALQQLVR 317 (392)
T ss_pred hhhhhhhhcCCcEEEEech-----hhcCCCchhchhhhhHHHHHHHHHHHH
Confidence 1122344556677754 356666778888888888888887773
No 36
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.73 E-value=3.2e-15 Score=143.62 Aligned_cols=174 Identities=25% Similarity=0.320 Sum_probs=102.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
..+||+|||||++|+++|+.|+++|++|+||||....+. ....+|.+.... .+ .++..+.......
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~-k~~~gg~l~~~~----------~e--~l~~~~~~~~~~~- 69 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA-KNVTGGRLYAHS----------LE--HIIPGFADSAPVE- 69 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC-cccccceechhh----------HH--HHhhhhhhcCccc-
Confidence 369999999999999999999999999999999873221 112233332200 00 1222222111110
Q ss_pred CcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce
Q 014198 132 NYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK 211 (429)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~ 211 (429)
.. . ....+.+..... ...+.+.+.... ........+.+..+.+.|.+.+ ++.|+++++++
T Consensus 70 ~~-~-~~~~~~~~~~~~------------~~~~~~~~~~~~-----~~~~~~~~v~R~~fD~~L~~~a-~~~Gv~i~~~~ 129 (428)
T PRK10157 70 RL-I-THEKLAFMTEKS------------AMTMDYCNGDET-----SPSQRSYSVLRSKFDAWLMEQA-EEAGAQLITGI 129 (428)
T ss_pred ce-e-eeeeEEEEcCCC------------ceeecccccccc-----CCCCCceeeEHHHHHHHHHHHH-HHCCCEEECCC
Confidence 00 0 000011111000 000111111000 0112345688899999999999 88899999999
Q ss_pred -EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccccccc
Q 014198 212 -VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSG 261 (429)
Q Consensus 212 -v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~ 261 (429)
|+++..+ ++.+..+.+ ++.+++||.||+|+|.++.....++...+..+
T Consensus 130 ~V~~i~~~-~g~v~~v~~-~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~ 178 (428)
T PRK10157 130 RVDNLVQR-DGKVVGVEA-DGDVIEAKTVILADGVNSILAEKLGMAKRVKP 178 (428)
T ss_pred EEEEEEEe-CCEEEEEEc-CCcEEECCEEEEEeCCCHHHHHHcCCCCCCCC
Confidence 9999876 666655554 56789999999999998754445554433333
No 37
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.72 E-value=3.8e-15 Score=141.85 Aligned_cols=288 Identities=21% Similarity=0.158 Sum_probs=157.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.++||+|||||++|+++|+.|+++|++|+|+||.. ++. -. .+++.+.+ ..+.++.......
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~-k~-~~~~~~~~----------------~~l~~l~~~~~~~ 63 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGA-KP-CCGGGLSP----------------RALEELIPDFDEE 63 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCC-Cc-cccceech----------------hhHHHhCCCcchh
Confidence 36899999999999999999999999999999987 332 11 11222222 1222221111100
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-cccceeEehHHHHHHHHHHHHhhcCcEEEE
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTTAQVHPQLFTKTLLNKAVNDYGLEVVI 209 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~ 209 (429)
....-.+......... ..... ......++...+.+.|.+.+ ++.|++++.
T Consensus 64 --i~~~v~~~~~~~~~~~--------------------------~~~~~~~~~~y~v~R~~fd~~La~~A-~~aGae~~~ 114 (396)
T COG0644 64 --IERKVTGARIYFPGEK--------------------------VAIEVPVGEGYIVDRAKFDKWLAERA-EEAGAELYP 114 (396)
T ss_pred --hheeeeeeEEEecCCc--------------------------eEEecCCCceEEEEhHHhhHHHHHHH-HHcCCEEEe
Confidence 0000001111000000 00000 03478899999999999999 889999999
Q ss_pred ce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccce---eeEEEecCCCCCCCCCceeEee
Q 014198 210 GK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLK---AHSIILEPKEADAITPHALFLS 285 (429)
Q Consensus 210 ~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 285 (429)
++ ++.+..++++.+ .+...++.+++|+.||.|+|..+.....++.. ...+.. ++.-.+..+. . .....+..
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~--~-~~~~~~~~ 189 (396)
T COG0644 115 GTRVTGVIREDDGVV-VGVRAGDDEVRAKVVIDADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPD--D-GDVEEFLY 189 (396)
T ss_pred ceEEEEEEEeCCcEE-EEEEcCCEEEEcCEEEECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCC--C-CceEEEEe
Confidence 99 999998844544 34444447899999999999988887766655 222222 2222222221 1 11111111
Q ss_pred eccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcc---ccCcccccceeeeeec
Q 014198 286 YYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSS---HLGEEAQVKAEQACFL 362 (429)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p---~l~~~~~~~~~~~g~r 362 (429)
...... ......+||..++...+ |....... ..... .. ++++.+....+ .+.. .++.....+..
T Consensus 190 ~~~~~~---~~Gy~wifP~~~~~~~V-G~g~~~~~------~~~~~-~~-~~l~~f~~~~~~~~~~~~-~~~~~~~~~~i 256 (396)
T COG0644 190 GPLDVG---PGGYGWIFPLGDGHANV-GIGVLLDD------PSLSP-FL-ELLERFKEHPAIRKLLLG-GKILEYAAGGI 256 (396)
T ss_pred cCCccC---CCceEEEEECCCceEEE-EEEEecCC------cCCCc-hH-HHHHHHHhCcccchhccC-CceEEEeeeec
Confidence 111111 23455688888775554 32222110 11111 12 33344433221 1111 13334444444
Q ss_pred cc--------CCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhcC
Q 014198 363 PC--------TDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMDG 409 (429)
Q Consensus 363 ~~--------t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g 409 (429)
|. ..++..+||... -....+.|.|+.+|..+|+++++.|.+.
T Consensus 257 p~~g~~~~~~~~~~~~lvGDAA-----g~v~p~~g~Gi~~A~~sg~~Aa~~i~~~ 306 (396)
T COG0644 257 PEGGPASRPLVGDGVLLVGDAA-----GFVNPLTGEGIRYAIKSGKLAAEAIAEA 306 (396)
T ss_pred ccCCcCCCccccCCEEEEeccc-----cCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 43 345556777553 2555666778999999999888888553
No 38
>PLN02463 lycopene beta cyclase
Probab=99.71 E-value=2.8e-15 Score=143.21 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=91.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
...+||+|||||++|+++|..|+++|++|+|||+.+...- .++ + ..|.+..+.++..
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~--p~~-------~--------------g~w~~~l~~lgl~ 82 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW--PNN-------Y--------------GVWVDEFEALGLL 82 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh--ccc-------c--------------chHHHHHHHCCcH
Confidence 3468999999999999999999999999999999762100 000 0 1111111111110
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
...............+.. . . ......+.+++..+.+.|.+.+ .+.|++++..
T Consensus 83 ~~l~~~w~~~~v~~~~~~----------------------~---~--~~~~~y~~V~R~~L~~~Ll~~~-~~~GV~~~~~ 134 (447)
T PLN02463 83 DCLDTTWPGAVVYIDDGK----------------------K---K--DLDRPYGRVNRKKLKSKMLERC-IANGVQFHQA 134 (447)
T ss_pred HHHHhhCCCcEEEEeCCC----------------------C---c--cccCcceeEEHHHHHHHHHHHH-hhcCCEEEee
Confidence 000000000000000000 0 0 0012446789999999999999 7889999754
Q ss_pred eEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchH
Q 014198 211 KVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGK 249 (429)
Q Consensus 211 ~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~ 249 (429)
.|++++.+ ++. ..|++++|.+++||.||.|+|..+..
T Consensus 135 ~V~~I~~~-~~~-~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 135 KVKKVVHE-ESK-SLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred EEEEEEEc-CCe-EEEEECCCCEEEcCEEEECcCCCcCc
Confidence 49999876 444 45788888899999999999998753
No 39
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.70 E-value=7.6e-15 Score=140.13 Aligned_cols=206 Identities=14% Similarity=0.062 Sum_probs=111.8
Q ss_pred cceeEehHHHHHHHHHHHHhhcCcEEEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH-hhhcccccc
Q 014198 182 TTAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE-LLASMFRVS 260 (429)
Q Consensus 182 ~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~-~~~~~~~~~ 260 (429)
....+++..+.+.|.+.+ .+.|++++..+|+++..+ ++..+.|++.++.+++|+.||.|+|.++.... ..+......
T Consensus 78 ~~~~i~~~~l~~~l~~~~-~~~gv~~~~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~q 155 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKC-PEGGVLWLERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGFQ 155 (388)
T ss_pred ceeEEcHHHHHHHHHHHH-HhcCcEEEccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceEE
Confidence 345689999999999999 777999875558888765 34445677777778999999999999982211 112222333
Q ss_pred cceeeEEEecCCCCCCCCCceeEeeeccCCC--C---CCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHH-
Q 014198 261 GLKAHSIILEPKEADAITPHALFLSYYPAQG--E---GGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASI- 334 (429)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~- 334 (429)
...+..+.+..+. .-....+++++..... . ...+...+++|..++... ++.+.... ....+.+.+
T Consensus 156 ~~~G~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~-v~~~~~~~------~~~~~~~~~~ 226 (388)
T TIGR01790 156 VAYGVEARLSRPP--HGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVF-IEETSLAD------RPALPRDRLR 226 (388)
T ss_pred EEEEEEEEEcCCC--CCCCceEEEeccccccccccccCCCCceEEEeecCCCeEE-EEeccccC------CCCCCHHHHH
Confidence 3445555554322 1123345555432210 0 000113455676666654 34332211 111233333
Q ss_pred HHHHHHHHHhccccCcccccceeeeeecccCC------CCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 335 QVLKRVARTVSSHLGEEAQVKAEQACFLPCTD------DGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 335 ~~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~------d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
+.+.+.++.. .+.. .++.+...|..|+.. ++..+||... ..+....|.|+.++...|..+++.+
T Consensus 227 ~~l~~~~~~~--g~~~-~~i~~~~~~~iP~~~~~~~~~~rv~liGdAA-----g~~~P~tG~Gi~~al~~a~~la~~l 296 (388)
T TIGR01790 227 QRILARLNAQ--GWQI-KTIEEEEWGALPVGLPGPFLPQRVAAFGAAA-----GMVHPTTGYSVARALSDAPGLAAAI 296 (388)
T ss_pred HHHHHHHHHc--CCee-eEEEeeeeEEEecccCCCccCCCeeeeechh-----cCcCCcccccHHHHHHHHHHHHHHH
Confidence 3343434332 2222 234444456556532 2333444322 2333356778888888888888887
No 40
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.70 E-value=4.2e-15 Score=142.64 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=101.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH--HHhCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA--EELNGP 130 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~ 130 (429)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.....-... .........+...+.++++++. +.+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~-------~~~~~r~~~l~~~~~~~L~~lGl~~~l~~- 73 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQ-------APFEPRVSALSAASQRILERLGAWDGIAA- 73 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccC-------CCCCccchhhhHHHHHHHHHCChhhhhhH-
Confidence 4799999999999999999999999999999986211000000 0000001123344444444321 11100
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
........+.+...... ....+ +.. ..+.......++...+.+.|.+.+ .+.|++++++
T Consensus 74 --~~~~~~~~~~~~~~~~~------------~~~~~-~~~-----~~~~~~~g~~i~~~~l~~~L~~~~-~~~gv~v~~~ 132 (405)
T PRK05714 74 --RRASPYSEMQVWDGSGT------------GQIHF-SAA-----SVHAEVLGHIVENRVVQDALLERL-HDSDIGLLAN 132 (405)
T ss_pred --hhCccceeEEEEcCCCC------------ceEEe-ccc-----ccCCCccEEEEEhHHHHHHHHHHH-hcCCCEEEcC
Confidence 00001111111110000 00000 000 001112234677788888999988 7789999999
Q ss_pred e-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccccc
Q 014198 211 K-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRV 259 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~ 259 (429)
+ +++++.+ ++.+ .|++.+|.+++||.||.|+|.+|.....++...+.
T Consensus 133 ~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~ 180 (405)
T PRK05714 133 ARLEQMRRS-GDDW-LLTLADGRQLRAPLVVAADGANSAVRRLAGCATRE 180 (405)
T ss_pred CEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCCchhHHhcCCCccc
Confidence 9 9999877 4444 46777888899999999999999765555554443
No 41
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.70 E-value=1.8e-15 Score=144.43 Aligned_cols=298 Identities=17% Similarity=0.161 Sum_probs=150.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc-ccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCC-
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC-AASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDN- 132 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~-~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 132 (429)
||+|||||++|+++|+.|+++|++|+|+||....+ ...+..+..+ .+...+.+.++++ +....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~-----------~l~~~~~~~l~~l----Gl~~~~ 65 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVS-----------ALSAASIRLLEKL----GVWDKI 65 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCccee-----------ecCHHHHHHHHHC----Cchhhh
Confidence 79999999999999999999999999999998321 1111011111 1112222333332 11000
Q ss_pred ---cCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcC-cEEE
Q 014198 133 ---YGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYG-LEVV 208 (429)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~G-v~v~ 208 (429)
......+ +.+...... ..+.+ .. ...........++...+.+.|.+.+ .+.| ++++
T Consensus 66 ~~~~~~~~~~-~~~~~~~~~------------~~~~~-~~-----~~~~~~~~~~~i~r~~l~~~L~~~~-~~~~~~~v~ 125 (385)
T TIGR01988 66 EPDRAQPIRD-IHVSDGGSF------------GALHF-DA-----DEIGLEALGYVVENRVLQQALWERL-QEYPNVTLL 125 (385)
T ss_pred hhhcCCCceE-EEEEeCCCC------------ceEEe-ch-----hhcCCCccEEEEEcHHHHHHHHHHH-HhCCCcEEe
Confidence 0000011 111110000 00000 00 0001112346788899999999999 7777 9999
Q ss_pred Ece-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccccccc--ceeeEEEecCCCCCCCCCceeEee
Q 014198 209 IGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSG--LKAHSIILEPKEADAITPHALFLS 285 (429)
Q Consensus 209 ~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 285 (429)
.++ |++++.+ ++.+ .+.+.+|..+.+|.||.|+|.++.....++...+... .......+.... +. .......
T Consensus 126 ~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 200 (385)
T TIGR01988 126 CPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHER--PH-QGTAWER 200 (385)
T ss_pred cCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecC--CC-CCEEEEE
Confidence 999 9999876 5544 4777788889999999999999975555543333222 222222333221 11 1111111
Q ss_pred eccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceee-e---ee
Q 014198 286 YYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQ-A---CF 361 (429)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~-~---g~ 361 (429)
+ .. .....++|..++...+.-...... .. .......++..+.+.+.+...++.+.. ......| . -.
T Consensus 201 ~-~~------~g~~~~~p~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 270 (385)
T TIGR01988 201 F-TP------TGPLALLPLPDNRSSLVWTLPPEE-AE-RLLALSDEEFLAELQRAFGSRLGAITL-VGERHAFPLSLTHA 270 (385)
T ss_pred e-cC------CCCEEEeECCCCCeEEEEECCHHH-HH-HHHcCCHHHHHHHHHHHHhhhcCceEe-ccCcceeechhhhh
Confidence 1 11 123456787777543322111100 00 000011223334444433333222211 0000111 0 01
Q ss_pred cccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 362 LPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 362 r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
.+...++..++|.. .+....+.|+|+..|..-|..+++.+.
T Consensus 271 ~~~~~~~v~LiGDA-----ah~~~P~~G~G~~~Ai~da~~La~~L~ 311 (385)
T TIGR01988 271 KRYVAPRLALIGDA-----AHTIHPLAGQGLNLGLRDVAALAEVLE 311 (385)
T ss_pred hheecCceEEEecc-----cccCCccccchhhhhHHHHHHHHHHHH
Confidence 12234556667743 466677888888888888888887773
No 42
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.69 E-value=5.7e-15 Score=142.34 Aligned_cols=297 Identities=15% Similarity=0.139 Sum_probs=146.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHH------HHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHR------SLA 124 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 124 (429)
...+||+|||||++|+++|..|+++|++|+|+||.+.....+ . +..+ .+...+.++++ ++.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~-g~~~-----------~l~~~~~~~L~~lGl~~~l~ 82 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA-K-GQAY-----------ALSLLSARIFEGIGVWEKIL 82 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC-C-CcEE-----------EechHHHHHHHHCChhhhhH
Confidence 557899999999999999999999999999999987321111 0 0000 11112223333 222
Q ss_pred HHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhh-c
Q 014198 125 EELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVND-Y 203 (429)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~-~ 203 (429)
+.... . ..+.+...... ....+. ... ............+.+.+.|.+.+ .+ .
T Consensus 83 ~~~~~-----~---~~~~~~~~~~~------------~~~~~~-~~~-----~~~~~~~~~~~~~~l~~~L~~~~-~~~~ 135 (415)
T PRK07364 83 PQIGK-----F---RQIRLSDADYP------------GVVKFQ-PTD-----LGTEALGYVGEHQVLLEALQEFL-QSCP 135 (415)
T ss_pred hhcCC-----c---cEEEEEeCCCC------------ceeeec-ccc-----CCCCccEEEEecHHHHHHHHHHH-hcCC
Confidence 21111 0 11111100000 000000 000 00011123345567888888888 55 4
Q ss_pred CcEEEEce-EEEEEEccCCcEEEEEEeC-C--eEEEcCEEEEcCCCCchHHHhhhccccccccee--eEEEecCCCCCCC
Q 014198 204 GLEVVIGK-VERVGVGEGGRVESVMIEG-G--RVVESDAVVLALGPWSGKFELLASMFRVSGLKA--HSIILEPKEADAI 277 (429)
Q Consensus 204 Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-g--~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 277 (429)
|+++++++ |++++.+ ++.+ .|++.+ + .+++||.||.|+|.+|.....++.......... ..+.+.... +
T Consensus 136 ~v~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~--~- 210 (415)
T PRK07364 136 NITWLCPAEVVSVEYQ-QDAA-TVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA--P- 210 (415)
T ss_pred CcEEEcCCeeEEEEec-CCee-EEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccC--C-
Confidence 89999999 9999876 4433 355543 2 469999999999999976655443322211111 112222221 1
Q ss_pred CCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCccccccee
Q 014198 278 TPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAE 357 (429)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~ 357 (429)
.....+..+ ...+ ...++|.+++...+.-.... .. .........++..+.+.+.+...++.+.. ..-...
T Consensus 211 ~~~~~~~~~-~~~g------~~~~~p~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~ 280 (415)
T PRK07364 211 HNDIAYERF-WPSG------PFAILPLPGNRCQIVWTAPH-AQ-AKALLALPEAEFLAELQQRYGDQLGKLEL-LGDRFL 280 (415)
T ss_pred CCCEEEEEe-cCCC------CeEEeECCCCCEEEEEECCH-HH-HHHHHCCCHHHHHHHHHHHhhhhhcCcee-cCCCce
Confidence 111111111 1111 24566777765433211110 00 00000111233344554444443332211 000000
Q ss_pred e----eeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 358 Q----ACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 358 ~----~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
| .-..++..++..++|.. .+....+.|+|+.+|.--|..+++.+.
T Consensus 281 ~~~~~~~~~~~~~~rv~LvGDA-----Ah~~~P~~GqG~n~al~DA~~La~~L~ 329 (415)
T PRK07364 281 FPVQLMQSDRYVQHRLALVGDA-----AHCCHPVGGQGLNLGIRDAAALAQVLQ 329 (415)
T ss_pred ecchhhhhhhhcCCcEEEEecc-----cccCCCcccccHhHHHHHHHHHHHHHH
Confidence 1 00122345566677754 366677788888888888888888873
No 43
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.69 E-value=1.2e-14 Score=138.80 Aligned_cols=301 Identities=17% Similarity=0.153 Sum_probs=155.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCc-cccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH--HHh
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVA-CAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA--EEL 127 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~-~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~ 127 (429)
++.+||+|||||++|+++|+.|++.|++|+|+||.... ........ ....+...+.++++++. +++
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~-----------r~~~l~~~~~~~l~~~g~~~~~ 71 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDS-----------RVYAISPSSQAFLERLGVWQAL 71 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCC-----------ceEeecHHHHHHHHHcCchhhh
Confidence 34689999999999999999999999999999998732 11100000 00122333444554431 111
Q ss_pred CCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcC-cE
Q 014198 128 NGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYG-LE 206 (429)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~G-v~ 206 (429)
.. ..+.....+.+...... .+.+. ............+++..+.+.|.+.+ ++.| ++
T Consensus 72 ~~---~~~~~~~~~~~~~~~~~-------------~~~~~------~~~~~~~~~~~~i~~~~l~~~L~~~~-~~~~~v~ 128 (388)
T PRK07608 72 DA---ARLAPVYDMRVFGDAHA-------------RLHFS------AYQAGVPQLAWIVESSLIERALWAAL-RFQPNLT 128 (388)
T ss_pred hh---hcCCcceEEEEEECCCc-------------eeEee------ccccCCCCCEEEEEhHHHHHHHHHHH-HhCCCcE
Confidence 00 00111111222111100 00000 00001122346788999999999999 7777 99
Q ss_pred EEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccc--eeeEEEecCCCCCCCCCceeE
Q 014198 207 VVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGL--KAHSIILEPKEADAITPHALF 283 (429)
Q Consensus 207 v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 283 (429)
++ ++ |+++..+ ++.+ .|++.++.+++||.||.|+|.+|.....++...+..+. .+....++... +. ....+
T Consensus 129 ~~-~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~ 202 (388)
T PRK07608 129 WF-PARAQGLEVD-PDAA-TLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER--PH-RGTAY 202 (388)
T ss_pred EE-cceeEEEEec-CCeE-EEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC--CC-CCEEE
Confidence 99 87 9999876 4443 47777777899999999999999744455555444433 23333343222 11 11111
Q ss_pred eeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHhccccCcccccceee-ee-
Q 014198 284 LSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASI-QVLKRVARTVSSHLGEEAQVKAEQ-AC- 360 (429)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~p~l~~~~~~~~~~-~g- 360 (429)
.+.. . .....++|.+++.+.+.-...... .... ...+++.+ +.+.+.....+..+.. ......| ..
T Consensus 203 -~~~~-~-----~~~~~~~p~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 271 (388)
T PRK07608 203 -QWFR-D-----DGILALLPLPDGHVSMVWSARTAH--ADEL-LALSPEALAARVERASGGRLGRLEC-VTPAAGFPLRL 271 (388)
T ss_pred -EEec-C-----CCCEEEeECCCCCeEEEEECCHHH--HHHH-HCCCHHHHHHHHHHHHHHhcCCcee-cCCcceeecch
Confidence 1111 1 123456788877654321111100 0000 11122222 2222222221111111 0000001 00
Q ss_pred --ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 361 --FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 361 --~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
......++..++|.. .+....+.|+|+..|.--|..+++.|.
T Consensus 272 ~~~~~~~~~rv~liGDA-----Ah~~~P~~GqG~n~ai~da~~La~~L~ 315 (388)
T PRK07608 272 QRVDRLVAPRVALVGDA-----AHLIHPLAGQGMNLGLRDVAALADVLA 315 (388)
T ss_pred hhhhhhhcCceEEEecc-----ccccCCccccccchhHHHHHHHHHHHH
Confidence 112234455567743 466677888899999999999998884
No 44
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.69 E-value=4.4e-15 Score=142.55 Aligned_cols=205 Identities=16% Similarity=0.069 Sum_probs=111.9
Q ss_pred cceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccccc-
Q 014198 182 TTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRV- 259 (429)
Q Consensus 182 ~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~- 259 (429)
....+++..+.+.|.+.+ .+.|+++++++ |++++.+ ++.+ .+++.++.++.+|.||.|+|.++.....++.....
T Consensus 104 ~~~~i~r~~l~~~L~~~~-~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~ 180 (403)
T PRK07333 104 FAHMVENRVLINALRKRA-EALGIDLREATSVTDFETR-DEGV-TVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGW 180 (403)
T ss_pred cEEEeEhHHHHHHHHHHH-HhCCCEEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccc
Confidence 345789999999999999 77899999999 9999876 4443 46777788899999999999998755455543322
Q ss_pred -ccceeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHH
Q 014198 260 -SGLKAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLK 338 (429)
Q Consensus 260 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (429)
+...+....++... + ........+ .. .....++|..++...+.-...... ........+....+.+.
T Consensus 181 ~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~------~g~~~~~Pl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 248 (403)
T PRK07333 181 DYGQSGIVCTVEHER--P-HGGRAEEHF-LP------AGPFAILPLKGNRSSLVWTERTAD--AERLVALDDLVFEAELE 248 (403)
T ss_pred cCCCEEEEEEEEcCC--C-CCCEEEEEe-CC------CCceEEeECCCCCeEEEEECCHHH--HHHHHCCCHHHHHHHHH
Confidence 22333333333221 1 111111111 11 123456787777654322111100 00000011122234444
Q ss_pred HHHHHhccccCcccccceeeee---ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 339 RVARTVSSHLGEEAQVKAEQAC---FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 339 ~~~~~~~p~l~~~~~~~~~~~g---~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
+.+...++.+............ .+....++..++|... +....+.|+|+.++...|..+++.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAA-----H~~~P~~GqG~n~ai~Da~~La~~L 314 (403)
T PRK07333 249 QRFGHRLGELKVLGKRRAFPLGLTLARSFVAPRFALVGDAA-----HGIHPIAGQGLNLGLKDVAALAEVV 314 (403)
T ss_pred HHhhhhcCceEeccCccEeechhhhhhhccCCCEEEEechh-----hcCCCccccchhhhHHHHHHHHHHH
Confidence 4444333322110000001111 1223456677788553 5666677788888887777777776
No 45
>PRK08244 hypothetical protein; Provisional
Probab=99.69 E-value=1.5e-14 Score=142.14 Aligned_cols=300 Identities=20% Similarity=0.165 Sum_probs=151.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHH------HHHH
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRS------LAEE 126 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~ 126 (429)
++||+|||||++|+++|+.|+++|++|+||||.+..... ++. ..+...+++++++ +.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~-~ra--------------~~l~~~~~e~l~~lGl~~~l~~~ 66 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY-SKA--------------LTLHPRTLEILDMRGLLERFLEK 66 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-cce--------------eEecHHHHHHHHhcCcHHHHHhh
Confidence 479999999999999999999999999999998722110 000 1122223333333 2221
Q ss_pred hCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcE
Q 014198 127 LNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLE 206 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~ 206 (429)
+.. +. . ..+.... ....+...+ ...+....+....+.+.|.+.+ ++.|++
T Consensus 67 -~~~----~~--~-~~~~~~~------------~~~~~~~~~---------~~~~~~~~i~q~~le~~L~~~~-~~~gv~ 116 (493)
T PRK08244 67 -GRK----LP--S-GHFAGLD------------TRLDFSALD---------TSSNYTLFLPQAETEKVLEEHA-RSLGVE 116 (493)
T ss_pred -ccc----cc--c-eEEeccc------------ccCCcccCC---------CCCCcEEEecHHHHHHHHHHHH-HHcCCe
Confidence 110 00 0 0000000 000000000 0112334566677888888888 778999
Q ss_pred EEEce-EEEEEEccCCcEEEEEEe--CC-eEEEcCEEEEcCCCCchHHHhhhccccccc--ceeeEEEecCCCCCCCCCc
Q 014198 207 VVIGK-VERVGVGEGGRVESVMIE--GG-RVVESDAVVLALGPWSGKFELLASMFRVSG--LKAHSIILEPKEADAITPH 280 (429)
Q Consensus 207 v~~~~-v~~i~~~~~g~v~~v~~~--~g-~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 280 (429)
++.++ +++++.+ ++.+. +.+. ++ .+++||.||.|+|.+|.....++...+-.. .......+.... + ...
T Consensus 117 v~~~~~v~~i~~~-~~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~--~-~~~ 191 (493)
T PRK08244 117 IFRGAEVLAVRQD-GDGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD--P-PPS 191 (493)
T ss_pred EEeCCEEEEEEEc-CCeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC--C-CCc
Confidence 99999 9999877 44432 4333 35 479999999999999965545544332211 111111121111 1 111
Q ss_pred eeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccc-cCcccccceeee
Q 014198 281 ALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSH-LGEEAQVKAEQA 359 (429)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~-l~~~~~~~~~~~ 359 (429)
..+..+. . .....++|..++...+.-...... ........+.+ ++.+.+.+.++. +.. .. ..|.
T Consensus 192 ~~~~~~~-~------~g~~~~~P~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~l~~~~~~~~~~-~~--~~~~ 256 (493)
T PRK08244 192 SVLSLCT-R------EGGVMIVPLSGGIYRVLIIDPERP--QVPKDEPVTLE---ELKTSLIRICGTDFGL-ND--PVWM 256 (493)
T ss_pred ceeEEEe-C------CceEEEEECCCCeEEEEEEcCCcc--cccCCCCCCHH---HHHHHHHHhhCCCCCc-CC--eeEE
Confidence 1111111 1 123467788777544322111110 11111122333 344444444432 111 01 1121
Q ss_pred ee--------cccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHH----HHHHHhcCCCCcccCCCCCCCC
Q 014198 360 CF--------LPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAA----LAELVMDGCASIVDLSRFSPAR 423 (429)
Q Consensus 360 g~--------r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~----la~~i~~g~~~~~~~~~~~~~R 423 (429)
.. ..+..++..++|.. .+....++|+|+.++.--|.. |+..+ +|...+.-++.|.-+|
T Consensus 257 ~~~~~~~~~a~~~~~gRv~L~GDA-----AH~~~P~~GqG~n~gi~DA~~La~~La~~l-~g~~~~~lL~~Ye~eR 326 (493)
T PRK08244 257 SRFGNATRQAERYRSGRIFLAGDA-----AHIHFPAGGQGLNVGLQDAMNLGWKLAAAI-KGWAPDWLLDSYHAER 326 (493)
T ss_pred EecccceeeHhhhccCcEEEeecc-----eeccCCccccccccchhhHHHHHHHHHHHH-cCCCCchhhhhhHHHH
Confidence 11 12345567778854 466677777777777776644 44444 4544444466666655
No 46
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.68 E-value=1.2e-14 Score=138.23 Aligned_cols=163 Identities=24% Similarity=0.299 Sum_probs=103.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH--HHhCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA--EELNGP 130 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~ 130 (429)
..||+|||||++|+++|..|+++|++|+|||+.+......+ .+ ..+...++++++++. +.+..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~-r~-------------~~l~~~~~~~L~~lG~~~~i~~- 66 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG-RG-------------IALSPNALRALERLGLWDRLEA- 66 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc-ee-------------eeecHhHHHHHHHcCChhhhhh-
Confidence 57999999999999999999999999999999821100111 11 223334445555543 11111
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhc-CcEEEE
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDY-GLEVVI 209 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~-Gv~v~~ 209 (429)
..........+..... .....+ ....+.......+....+.+.|.+.+ .+. ++++++
T Consensus 67 --~~~~~~~~~~~~~~~~--------------~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~v~~~~ 124 (387)
T COG0654 67 --LGVPPLHVMVVDDGGR--------------RLLIFD-----AAELGRGALGYVVPRSDLLNALLEAA-RALPNVTLRF 124 (387)
T ss_pred --ccCCceeeEEEecCCc--------------eeEEec-----ccccCCCcceEEeEhHHHHHHHHHHH-hhCCCcEEEc
Confidence 0011111111111000 000000 00001134567788899999999999 554 499999
Q ss_pred ce-EEEEEEccCCcEEEEEEe-CCeEEEcCEEEEcCCCCchHHHhhh
Q 014198 210 GK-VERVGVGEGGRVESVMIE-GGRVVESDAVVLALGPWSGKFELLA 254 (429)
Q Consensus 210 ~~-v~~i~~~~~g~v~~v~~~-~g~~i~ad~vV~a~G~~s~~~~~~~ 254 (429)
++ |+.++.+ ++.+. ++++ +|++++||.||.|+|.+|.....++
T Consensus 125 ~~~v~~~~~~-~~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 125 GAEVEAVEQD-GDGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred CceEEEEEEc-CCceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 99 9999988 55555 7777 8889999999999999999888665
No 47
>PRK10015 oxidoreductase; Provisional
Probab=99.68 E-value=3.5e-14 Score=136.21 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=97.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
.++||+|||||++|+++|+.|+++|++|+||||....+ ....++|.+.. ..++.+...+....
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g-~k~~~gg~i~~----------------~~~~~l~~~~~~~~ 66 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG-CKNMTGGRLYA----------------HTLEAIIPGFAASA 66 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC-cccccCceeec----------------ccHHHHcccccccC
Confidence 46899999999999999999999999999999987432 11122333322 11111111110000
Q ss_pred CcCee-eeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-cccceeEehHHHHHHHHHHHHhhcCcEEEE
Q 014198 132 NYGYR-ALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTTAQVHPQLFTKTLLNKAVNDYGLEVVI 209 (429)
Q Consensus 132 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~ 209 (429)
..... ....+.+..... ...+.+.... .+. ......+.+..+.+.|.+.+ ++.|++++.
T Consensus 67 ~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~------~~~~~~~~~~v~R~~fd~~L~~~a-~~~Gv~i~~ 127 (429)
T PRK10015 67 PVERKVTREKISFLTEES------------AVTLDFHREQ------PDVPQHASYTVLRNRLDPWLMEQA-EQAGAQFIP 127 (429)
T ss_pred CccccccceeEEEEeCCC------------ceEeecccCC------CCCCCcCceEeehhHHHHHHHHHH-HHcCCEEEC
Confidence 00000 000011100000 0000010000 000 12346678889999999999 888999999
Q ss_pred ce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhc
Q 014198 210 GK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLAS 255 (429)
Q Consensus 210 ~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~ 255 (429)
++ |+++..+ ++++.++.+ ++.+++||.||+|+|.++.....++.
T Consensus 128 ~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v~~~lg~ 172 (429)
T PRK10015 128 GVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVNSMLGRSLGM 172 (429)
T ss_pred CcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcchhhhcccCC
Confidence 99 9999876 566666655 45689999999999997754434443
No 48
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.68 E-value=3.5e-15 Score=142.42 Aligned_cols=299 Identities=17% Similarity=0.144 Sum_probs=148.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH--HHhCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA--EELNG 129 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~ 129 (429)
..+||+|||||++|+++|+.|+++|++|+|||+.+.... .+.. .+...+.++++++. +.+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~--~r~~--------------~l~~~s~~~l~~lgl~~~~~~ 69 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD--LRTT--------------ALLGPSIRFLERLGLWARLAP 69 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC--cchh--------------hCcHHHHHHHHHhCchhhhHh
Confidence 457999999999999999999999999999999873210 1111 11112233333321 11100
Q ss_pred CCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcC-cEEE
Q 014198 130 PDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYG-LEVV 208 (429)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~G-v~v~ 208 (429)
. ...+ ....+....... . ...... ++. ...+..+....++...+.+.|.+.+ .+.+ +. +
T Consensus 70 ~-~~~~---~~~~~~~~~g~~-~-------~~~~~~-~~~-----~~~~~~~~g~~i~~~~l~~~L~~~~-~~~~~~~-~ 129 (388)
T PRK07494 70 H-AAPL---QSMRIVDATGRL-I-------RAPEVR-FRA-----AEIGEDAFGYNIPNWLLNRALEARV-AELPNIT-R 129 (388)
T ss_pred h-ccee---eEEEEEeCCCCC-C-------CCceEE-EcH-----HhcCCCccEEEeEhHHHHHHHHHHH-hcCCCcE-E
Confidence 0 0001 111111110000 0 000000 000 0001112345688889999999998 6654 55 7
Q ss_pred Ece-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccc--cceeeEEEecCCCCCCCCCceeEee
Q 014198 209 IGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVS--GLKAHSIILEPKEADAITPHALFLS 285 (429)
Q Consensus 209 ~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (429)
+++ |++++.+ ++.+ .|+++++.+++||.||.|+|.+|.....++...... +.....+.++... +. .....+
T Consensus 130 ~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~--~~--~~~~~~ 203 (388)
T PRK07494 130 FGDEAESVRPR-EDEV-TVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSR--PH--QNVSTE 203 (388)
T ss_pred ECCeeEEEEEc-CCeE-EEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccC--CC--CCEEEE
Confidence 788 9999876 4444 477777888999999999999997555555443322 2222222333211 11 111111
Q ss_pred eccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHhccccCcccccceeeee----
Q 014198 286 YYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPAS-IQVLKRVARTVSSHLGEEAQVKAEQAC---- 360 (429)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~~~~~~~~~~g---- 360 (429)
+.... +...++|.+++...++-...... .. .....+.+. .+.+.+.+.+++..+.. ......|.=
T Consensus 204 ~~~~~------g~~~~~Pl~~~~~~~v~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~l~~~~ 273 (388)
T PRK07494 204 FHTEG------GPFTQVPLPGRRSSLVWVVRPAE--AE-RLLALSDAALSAAIEERMQSMLGKLTL-EPGRQAWPLSGQV 273 (388)
T ss_pred EeCCC------CcEEEEECCCCcEEEEEECCHHH--HH-HHHcCCHHHHHHHHHHHHhhhcCCeEE-ccCCcEeechHHH
Confidence 11111 23456677665433321111100 00 001112222 23333333333222111 000011100
Q ss_pred ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 361 FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 361 ~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
...+..++..++|.. .+....+.|+|+.++.--|..+++.+.
T Consensus 274 ~~~~~~~rv~LiGDA-----AH~~~P~~GqG~n~~l~Da~~La~~L~ 315 (388)
T PRK07494 274 AHRFAAGRTALVGEA-----AHVFPPIGAQGLNLGLRDVATLVEIVE 315 (388)
T ss_pred HHhhccCceEEEEhh-----hhcCCchhhcccchhHHHHHHHHHHHH
Confidence 012234556667744 355667788899999999999988884
No 49
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.67 E-value=8e-15 Score=139.76 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=109.2
Q ss_pred ceeEehHHHHHHHHHHHHhh-cCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccc
Q 014198 183 TAQVHPQLFTKTLLNKAVND-YGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVS 260 (429)
Q Consensus 183 ~~~~~~~~l~~~l~~~~~~~-~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~ 260 (429)
...+++..+.+.|.+.+ .+ .|++++.++ |++++.+ ++.+ .|.+.++.+++||.||.|+|.+|.....++...+..
T Consensus 99 ~~~i~r~~l~~~L~~~~-~~~~gv~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~ 175 (382)
T TIGR01984 99 GYVVELADLGQALLSRL-ALLTNIQLYCPARYKEIIRN-QDYV-RVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEH 175 (382)
T ss_pred EEEEEcHHHHHHHHHHH-HhCCCcEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEeeEEEEecCCChHHHHHcCCCCccc
Confidence 45689999999999999 66 599999999 9999876 4444 467777888999999999999987444554433332
Q ss_pred cc--eeeEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCC-cEEEeccCCCCCCCCCCCCCCCCHHHHHHH
Q 014198 261 GL--KAHSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTG-EVYLCGMSSEQEVPDDPETVSGDPASIQVL 337 (429)
Q Consensus 261 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l 337 (429)
.. ......++... +. ....+..+ .. .....++|..++ ...+.-...... .........++..+.+
T Consensus 176 ~~~~~~~~~~~~~~~--~~-~~~~~~~~-~~------~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 243 (382)
T TIGR01984 176 DYNQTALIANIRHEQ--PH-QGCAFERF-TP------HGPLALLPLKDNYRSSLVWCLPSKQ--ADTIANLPDAEFLAEL 243 (382)
T ss_pred ccCCEEEEEEEEecC--CC-CCEEEEee-CC------CCCeEECcCCCCCCEEEEEECCHHH--HHHHHcCCHHHHHHHH
Confidence 21 11122222211 11 11111111 11 123456677666 332221111100 0000001112223444
Q ss_pred HHHHHHhccccCcccccceeee----eecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 338 KRVARTVSSHLGEEAQVKAEQA----CFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 338 ~~~~~~~~p~l~~~~~~~~~~~----g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
.+.+...+..+.. ......|. .......++..++|.. .+....++|.|+..|.--|..+++.|.
T Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGDA-----Ah~~~P~~GqG~~~al~Da~~La~~L~ 311 (382)
T TIGR01984 244 QQAFGWRLGKITQ-VGERKTYPLKLRIAETHVHPRVVLIGNA-----AQTLHPIAGQGFNLGLRDVETLAEVLI 311 (382)
T ss_pred HHHHhhhccCeEE-cCCccEeecchhhhhheecCCEEEEeec-----ccccCCccccchhhhHHHHHHHHHHHH
Confidence 4433332222211 00011111 1112234556677743 466778889999999999998888884
No 50
>PRK08013 oxidoreductase; Provisional
Probab=99.67 E-value=1e-14 Score=139.44 Aligned_cols=172 Identities=18% Similarity=0.179 Sum_probs=100.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDN 132 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 132 (429)
.+||+|||||++|+++|+.|+++|++|+|||+.+......+... .+.. ..+...+.++++++ +....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~-~~r~--------~~l~~~s~~~L~~l----Gl~~~ 69 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPP-ALRV--------SAINAASEKLLTRL----GVWQD 69 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCC-Ccee--------eecchhHHHHHHHc----CCchh
Confidence 47999999999999999999999999999999873211100000 0000 11222333444432 21110
Q ss_pred cC---eeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhh-cCcEEE
Q 014198 133 YG---YRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVND-YGLEVV 208 (429)
Q Consensus 133 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~-~Gv~v~ 208 (429)
.. ........+..... . ..+. ++ ....+.......+....+.+.|.+.+ .+ .|++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~-~-----------~~~~-~~-----~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~~~v~i~ 130 (400)
T PRK08013 70 ILARRASCYHGMEVWDKDS-F-----------GRIA-FD-----DQSMGYSHLGHIIENSVIHYALWQKA-QQSSDITLL 130 (400)
T ss_pred hhhhcCccccEEEEEeCCC-C-----------ceEE-Ec-----ccccCCCccEEEEEhHHHHHHHHHHH-hcCCCcEEE
Confidence 00 00001111110000 0 0000 00 00011112235688889999999998 55 489999
Q ss_pred Ece-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccc
Q 014198 209 IGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFR 258 (429)
Q Consensus 209 ~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~ 258 (429)
+++ |++++.+ ++.+ .+++.+|.+++||.||.|+|.+|.....++....
T Consensus 131 ~~~~v~~i~~~-~~~v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~ 179 (400)
T PRK08013 131 APAELQQVAWG-ENEA-FLTLKDGSMLTARLVVGADGANSWLRNKADIPLT 179 (400)
T ss_pred cCCeeEEEEec-CCeE-EEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCcc
Confidence 999 9999876 3333 4666788899999999999999987776554433
No 51
>PRK09126 hypothetical protein; Provisional
Probab=99.66 E-value=5.9e-15 Score=141.11 Aligned_cols=167 Identities=23% Similarity=0.265 Sum_probs=96.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccc-cccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAAS-GKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s-~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
++||+|||||++|+++|+.|+++|++|+|+||.......+ ...+ ....+...+.++++++ +...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g-----------~~i~l~~~~~~~L~~l----Gl~~ 67 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDG-----------REIALTHASREILQRL----GAWD 67 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCch-----------hHHHhhHHHHHHHHHC----CChh
Confidence 5899999999999999999999999999999987321000 0000 0011222333343332 2210
Q ss_pred Cc---CeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEE
Q 014198 132 NY---GYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVV 208 (429)
Q Consensus 132 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~ 208 (429)
.. .........+..... ...+.+-.. ..+.......+....+.+.|.+.+.+..|++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~------~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~ 129 (392)
T PRK09126 68 RIPEDEISPLRDAKVLNGRS------------PFALTFDAR------GRGADALGYLVPNHLIRRAAYEAVSQQDGIELL 129 (392)
T ss_pred hhccccCCccceEEEEcCCC------------CceeEeehh------hcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEE
Confidence 00 000000111110000 000000000 000112233466777888888887445799999
Q ss_pred Ece-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhh
Q 014198 209 IGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLA 254 (429)
Q Consensus 209 ~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~ 254 (429)
+++ |++++.+ ++.+ .|.+++|.+++||.||.|+|.+|.....++
T Consensus 130 ~~~~v~~~~~~-~~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 130 TGTRVTAVRTD-DDGA-QVTLANGRRLTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred cCCeEEEEEEc-CCeE-EEEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence 999 9999876 4443 477778889999999999999887665544
No 52
>PRK06847 hypothetical protein; Provisional
Probab=99.66 E-value=1.8e-14 Score=137.02 Aligned_cols=297 Identities=20% Similarity=0.209 Sum_probs=149.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
+..||+|||||++|+++|..|++.|++|+|+|+.. +... + .+-.+.+. . . -..+.+.+++.+.+. ...
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~--g-~g~~l~~~-----~-~-~~l~~~gl~~~~~~~-~~~ 71 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVY--G-AGITLQGN-----A-L-RALRELGVLDECLEA-GFG 71 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccC--C-ceeeecHH-----H-H-HHHHHcCCHHHHHHh-CCC
Confidence 45799999999999999999999999999999986 2211 0 00001000 0 0 001111222222221 110
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccC-ccccceeEehHHHHHHHHHHHHhhcCcEEEE
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIG-STQTTAQVHPQLFTKTLLNKAVNDYGLEVVI 209 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~ 209 (429)
. ....+..... .....++.. ...+ ..+....+++..+.+.|.+.+ .+.|+++++
T Consensus 72 --~-----~~~~~~~~~g-------------~~~~~~~~~----~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~gv~v~~ 126 (375)
T PRK06847 72 --F-----DGVDLFDPDG-------------TLLAELPTP----RLAGDDLPGGGGIMRPALARILADAA-RAAGADVRL 126 (375)
T ss_pred --c-----cceEEECCCC-------------CEEEecCcc----cccccCCCCcccCcHHHHHHHHHHHH-HHhCCEEEe
Confidence 0 0001100000 000000000 0000 012345678889999999999 778999999
Q ss_pred ce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhh-hcc-cccccce-eeEEEecCCCCCCCCCceeEee
Q 014198 210 GK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELL-ASM-FRVSGLK-AHSIILEPKEADAITPHALFLS 285 (429)
Q Consensus 210 ~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 285 (429)
++ |++++.+ ++.+ .+.+.+|.++.+|.||.|+|.++.....+ +.. .+.+... .+...++.+. .......+..
T Consensus 127 ~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~ 202 (375)
T PRK06847 127 GTTVTAIEQD-DDGV-TVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPA--EVDRSLMYLG 202 (375)
T ss_pred CCEEEEEEEc-CCEE-EEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCC--CccceEEEeC
Confidence 99 9999876 4443 46777888899999999999999776532 221 1221111 1112223222 2222222221
Q ss_pred eccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHhcc-ccCc------cccccee
Q 014198 286 YYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPAS-IQVLKRVARTVSS-HLGE------EAQVKAE 357 (429)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p-~l~~------~~~~~~~ 357 (429)
. .....++|..++..++....... .. ...+++. .+.+.+.+..+.+ .+.. .......
T Consensus 203 ----~-----~~~~~~~p~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (375)
T PRK06847 203 ----P-----TTKAGVVPLSEDLMYLFVTEPRP---DN---PRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY 267 (375)
T ss_pred ----C-----CcEEEEEcCCCCeEEEEEeccCc---cc---ccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee
Confidence 0 12234557666655433322111 00 1112222 2334333333322 1110 0000000
Q ss_pred e-ee----ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHhc
Q 014198 358 Q-AC----FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVMD 408 (429)
Q Consensus 358 ~-~g----~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~ 408 (429)
+ .. ..+...++..++|.. .+....+.|+|+..|.--|..|++.|..
T Consensus 268 ~~~~~~~~~~~~~~grv~LiGDA-----aH~~~P~~GqG~n~aieDA~~La~~L~~ 318 (375)
T PRK06847 268 RPLETLLVPAPWHRGRVVLIGDA-----AHATTPHLAQGAGMAIEDAIVLAEELAR 318 (375)
T ss_pred ccHhhccCCCCccCCeEEEEech-----hccCCCCccccHHHHHHHHHHHHHHHhh
Confidence 0 00 112233445667743 3566778899999999999999999944
No 53
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.66 E-value=5.3e-15 Score=140.74 Aligned_cols=297 Identities=16% Similarity=0.121 Sum_probs=147.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc-ccccc-cCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC-AASGK-AGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~-~~s~~-~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.+||+|||||++|+++|+.|+++|++|+|+|+.+... ...+. ..+. ..+...++++++++ +..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~-----------~~l~~~~~~~L~~l----G~~ 67 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRV-----------SAISQTSVDLLESL----GAW 67 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccE-----------EEecHHHHHHHHHC----CCc
Confidence 4799999999999999999999999999999875211 00000 0000 11223333444432 221
Q ss_pred CCcC---eeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEE
Q 014198 131 DNYG---YRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEV 207 (429)
Q Consensus 131 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v 207 (429)
.... ......+....... . ...+ ... ..........+....+.+.|.+.+....|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~-~~~-----~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i 128 (384)
T PRK08849 68 SSIVAMRVCPYKRLETWEHPE-----------C--RTRF-HSD-----ELNLDQLGYIVENRLIQLGLWQQFAQYPNLTL 128 (384)
T ss_pred hhhhHhhCCccceEEEEeCCC-----------c--eEEe-ccc-----ccCCCccEEEEEcHHHHHHHHHHHHhCCCeEE
Confidence 1000 00000111000000 0 0000 000 00001112345556677788888734457999
Q ss_pred EEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCCCCCceeEeee
Q 014198 208 VIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSY 286 (429)
Q Consensus 208 ~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (429)
++++ |++++.+ ++.+ .|++.+|.+++||.||.|+|.+|.....++..........+.+.++.... .......+..+
T Consensus 129 ~~~~~v~~~~~~-~~~~-~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~ 205 (384)
T PRK08849 129 MCPEKLADLEFS-AEGN-RVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-QPQQDITWQQF 205 (384)
T ss_pred ECCCceeEEEEc-CCeE-EEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-CCCCCEEEEEe
Confidence 9999 9999887 4443 47777888999999999999999877655443332222233333221110 11111112111
Q ss_pred ccCCCCCCCCCCCceEecCCCcE-EEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccceeeeee----
Q 014198 287 YPAQGEGGKPMDPEVYPRPTGEV-YLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAEQACF---- 361 (429)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~g~~-~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~~~g~---- 361 (429)
...+ ...++|.+++.. +++...... .........+...+.+.+.+...++.+ .+ .+...
T Consensus 206 -~~~g------~~~~~pl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~--~~~~~~~l~ 269 (384)
T PRK08849 206 -TPSG------PRSFLPLCGNQGSLVWYDSPKR---IKQLSAMNPEQLRSEILRHFPAELGEI----KV--LQHGSFPLT 269 (384)
T ss_pred -CCCC------CEEEeEcCCCceEEEEECCHHH---HHHHHcCCHHHHHHHHHHHhhhhhCcE----Ee--ccceEeecc
Confidence 1112 122345544322 122211100 000000112223344444443322222 11 11111
Q ss_pred ----cccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 362 ----LPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 362 ----r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
.....++..++|.. .+....+.|+|+.++..-|..|++.+.
T Consensus 270 ~~~~~~~~~grv~LlGDA-----AH~~~P~~GQG~n~al~Da~~L~~~l~ 314 (384)
T PRK08849 270 RRHAQQYVKNNCVLLGDA-----AHTINPLAGQGVNLGFKDVDVLLAETE 314 (384)
T ss_pred ccccchhccCCEEEEEcc-----cccCCCCccchHhHHHHHHHHHHHHHH
Confidence 12344555677744 466777889999999999999999884
No 54
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.65 E-value=1e-13 Score=132.06 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=52.5
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEceEEEEEEccCCcEEEEEEeC--------CeEEEcCEEEEcCCCCchHHHhhhc
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEG--------GRVVESDAVVLALGPWSGKFELLAS 255 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~v~~i~~~~~g~v~~v~~~~--------g~~i~ad~vV~a~G~~s~~~~~~~~ 255 (429)
+.++...+.+.|.+.+ .+.|++++..+|+++..+ ++.+ .+.+.+ ..+++||.||.|+|.+|.....++.
T Consensus 87 ~~~~r~~fd~~L~~~a-~~~G~~v~~~~v~~v~~~-~~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~ 163 (388)
T TIGR02023 87 GMVRREVFDSYLRERA-QKAGAELIHGLFLKLERD-RDGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGL 163 (388)
T ss_pred EeeeHHHHHHHHHHHH-HhCCCEEEeeEEEEEEEc-CCeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCC
Confidence 4689999999999999 778999976558888876 4443 354432 2479999999999999976655543
No 55
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.65 E-value=2.8e-14 Score=136.63 Aligned_cols=203 Identities=15% Similarity=0.106 Sum_probs=106.6
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccc
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGL 262 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~ 262 (429)
..++...+.+.|.+.+....|+++++++ |+++..+ ++.+ .|++.++..+.+|.||.|+|.++.....++...+..+.
T Consensus 107 ~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~ 184 (395)
T PRK05732 107 YVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPY 184 (395)
T ss_pred EEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceec
Confidence 4567777888888888334689999999 9999876 4444 47777777899999999999999755455544333332
Q ss_pred eeeEEE--ecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 014198 263 KAHSII--LEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRV 340 (429)
Q Consensus 263 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (429)
....+. +.... . .....+..+. . ....+++|..+|...+.-....... ........++..+.+.+.
T Consensus 185 ~~~~~~~~~~~~~--~-~~~~~~~~~~-~------~g~~~~~p~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 252 (395)
T PRK05732 185 EQVAVIANVTTSE--A-HQGRAFERFT-E------HGPLALLPMSDGRCSLVWCHPLEDA--EEVLSWSDAQFLAELQQA 252 (395)
T ss_pred CCEEEEEEEEecC--C-CCCEEEEeec-C------CCCEEEeECCCCCeEEEEECCHHHH--HHHHcCCHHHHHHHHHHH
Confidence 211221 22111 1 1111111111 1 1235677888776543221111000 000011122333444443
Q ss_pred HHHhccccCcccccceee----eeecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 341 ARTVSSHLGEEAQVKAEQ----ACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 341 ~~~~~p~l~~~~~~~~~~----~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
+...++.+.. ..-...| ....+...++..++|.. .+....+.|+|+..|...|..+++.+
T Consensus 253 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~grv~LvGDA-----Ah~~~P~~GqG~~~al~Da~~La~~L 316 (395)
T PRK05732 253 FGWRLGRITH-AGKRSAYPLALVTAAQQISHRLALVGNA-----AQTLHPIAGQGFNLGLRDVMSLAETL 316 (395)
T ss_pred HHhhhcceee-cCCcceecccccchhhhccCcEEEEeec-----ccccCCccccccchHHHHHHHHHHHH
Confidence 3222222211 0000111 01122334555677744 36667778888888888888877777
No 56
>PRK06834 hypothetical protein; Provisional
Probab=99.63 E-value=4.3e-14 Score=137.64 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=97.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHH------HHHHHH
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLH------RSLAEE 126 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~ 126 (429)
.+||+|||||++|+++|+.|+++|++|+||||.+.......+..+ +...+.+++ +++.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~--------------l~~~s~~~L~~lGl~~~l~~~ 68 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGG--------------LHARTLEVLDQRGIADRFLAQ 68 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceee--------------ECHHHHHHHHHcCcHHHHHhc
Confidence 479999999999999999999999999999998732111111111 122222333 333221
Q ss_pred hCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcE
Q 014198 127 LNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLE 206 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~ 206 (429)
... ......+...+ +..... ...+....+....+.+.|.+.+ ++.|++
T Consensus 69 ~~~---~~~~~~~~~~~------------------------~~~~~~----~~~~~~~~i~q~~le~~L~~~l-~~~gv~ 116 (488)
T PRK06834 69 GQV---AQVTGFAATRL------------------------DISDFP----TRHNYGLALWQNHIERILAEWV-GELGVP 116 (488)
T ss_pred CCc---cccceeeeEec------------------------ccccCC----CCCCccccccHHHHHHHHHHHH-HhCCCE
Confidence 100 00000000000 000000 0012223345567788888888 778999
Q ss_pred EEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccc
Q 014198 207 VVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVS 260 (429)
Q Consensus 207 v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~ 260 (429)
+++++ |++++.+ ++.+ .+++.++.+++||.||.|+|.+|.....++...+-.
T Consensus 117 i~~~~~v~~v~~~-~~~v-~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~ 169 (488)
T PRK06834 117 IYRGREVTGFAQD-DTGV-DVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGW 169 (488)
T ss_pred EEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCC
Confidence 99999 9999987 4444 366666778999999999999996555666555533
No 57
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.63 E-value=2.7e-14 Score=136.46 Aligned_cols=295 Identities=15% Similarity=0.131 Sum_probs=149.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
...+||+|||||++|+++|+.|+++|++|+|||+.....-...... ......+...+.+++++ ++..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~---------~~r~~~l~~~~~~~l~~----lGl~ 69 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQP---------DVRISAISAASVALLKG----LGVW 69 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCC---------CceEEeccHHHHHHHHH----cCCh
Confidence 3468999999999999999999999999999999862110000000 00001122223333332 2211
Q ss_pred CCc------CeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhc-
Q 014198 131 DNY------GYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDY- 203 (429)
Q Consensus 131 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~- 203 (429)
... .+... ....... ..+. .+... .........++...+.+.|.+.+ .+.
T Consensus 70 ~~~~~~~~~~~~~~---~~~~~~~-------------~~~~-~~~~~-----~~~~~~g~~i~r~~l~~~L~~~~-~~~~ 126 (391)
T PRK08020 70 DAVQAMRSHPYRRL---ETWEWET-------------AHVV-FDAAE-----LKLPELGYMVENRVLQLALWQAL-EAHP 126 (391)
T ss_pred hhhhhhhCcccceE---EEEeCCC-------------CeEE-ecccc-----cCCCccEEEEEcHHHHHHHHHHH-HcCC
Confidence 000 01100 0000000 0000 00000 00112234688889999999988 554
Q ss_pred CcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccc--ccccceeeEEEecCCCCCCCCCc
Q 014198 204 GLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMF--RVSGLKAHSIILEPKEADAITPH 280 (429)
Q Consensus 204 Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 280 (429)
|+++++++ |+++..+ ++. +.|.+.++.+++||.||.|+|.+|.....++... +.+....+.+.++... + ...
T Consensus 127 gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~--~-~~~ 201 (391)
T PRK08020 127 NVTLRCPASLQALQRD-DDG-WELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCEN--P-PGD 201 (391)
T ss_pred CcEEEcCCeeEEEEEc-CCe-EEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecC--C-CCC
Confidence 99999999 9999876 443 3467777888999999999999997544444322 2333444444444322 1 111
Q ss_pred eeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcc-ccCcccccceeee
Q 014198 281 ALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSS-HLGEEAQVKAEQA 359 (429)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p-~l~~~~~~~~~~~ 359 (429)
..+..+. ..+ ...++|..++...+ ........ .... ...+. +.+.+.+.+.+| .+.. +...+.
T Consensus 202 ~~~~~~~-~~g------~~~~~p~~~~~~~~-v~~~~~~~-~~~~-~~~~~---~~~~~~l~~~~~~~~~~---~~~~~~ 265 (391)
T PRK08020 202 STWQQFT-PSG------PRAFLPLFDNWASL-VWYDSPAR-IRQL-QAMSM---AQLQQEIAAHFPARLGA---VTPVAA 265 (391)
T ss_pred EEEEEEc-CCC------CEEEeECCCCcEEE-EEECCHHH-HHHH-HCCCH---HHHHHHHHHHhhhhccc---eEeccc
Confidence 1221111 111 22355665553322 11111000 0000 01122 223333333333 2222 111111
Q ss_pred eec--------ccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 360 CFL--------PCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 360 g~r--------~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
+.. ....++..++|.. .+....+.|+|+.++..-|..+++.+.
T Consensus 266 ~~~pl~~~~~~~~~~~rv~LvGDA-----AH~~~P~~GqG~n~al~Da~~La~~L~ 316 (391)
T PRK08020 266 GAFPLTRRHALQYVQPGLALVGDA-----AHTINPLAGQGVNLGYRDVDALLDVLV 316 (391)
T ss_pred cEeecceeehhhhccCcEEEEech-----hhccCCcccchhHHHHHHHHHHHHHHH
Confidence 111 2344566677744 366677888899999998888888874
No 58
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.63 E-value=8.5e-14 Score=133.34 Aligned_cols=204 Identities=15% Similarity=0.102 Sum_probs=108.6
Q ss_pred eeEehHHHHHHHHHHHHhhc-CcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhh-hcccccc
Q 014198 184 AQVHPQLFTKTLLNKAVNDY-GLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELL-ASMFRVS 260 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~-Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~-~~~~~~~ 260 (429)
..+++..+.+.|.+.+ .+. ++++++++ |+++..+ ++.+ .+.+.++.++.||.||.|+|.+|.....+ +......
T Consensus 104 ~~i~r~~l~~~L~~~~-~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~~~~~~ 180 (396)
T PRK08163 104 AVIHRADIHLSLLEAV-LDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGCDGVKSVVRQSLVGDAPRVT 180 (396)
T ss_pred EEEEHHHHHHHHHHHH-HhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEECCCcChHHHhhccCCCCCcc
Confidence 4688899999999998 555 59999999 9999876 4444 36677788899999999999999877633 3311111
Q ss_pred cceeeEEEecCCCC-CCCCCc--eeEeeeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHH
Q 014198 261 GLKAHSIILEPKEA-DAITPH--ALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVL 337 (429)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l 337 (429)
....+...++.... ...... ..+.. .......+|..+|..+.+........ .... .......+.+
T Consensus 181 g~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~p~~~g~~~~~~~~~~~~~-~~~~--~~~~~~~~~l 248 (396)
T PRK08163 181 GHVVYRAVIDVDDMPEDLRINAPVLWAG---------PHCHLVHYPLRGGEQYNLVVTFHSRE-QEEW--GVKDGSKEEV 248 (396)
T ss_pred ccEEEEEEEeHHHCcchhccCccEEEEc---------CCceEEEEEecCCeEEEEEEEECCCC-Cccc--ccCCCCHHHH
Confidence 11111112221110 011111 11111 01223456766665322111111110 0000 0111223455
Q ss_pred HHHHHHhccccCcccccceeeee--------ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 338 KRVARTVSSHLGEEAQVKAEQAC--------FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 338 ~~~~~~~~p~l~~~~~~~~~~~g--------~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
++.+..+.|.+..-......|.- ......++..++|.. .+....+.|+|+.+|.--|..+++.|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDA-----AH~~~P~~GqG~n~ai~Da~~La~~L~ 321 (396)
T PRK08163 249 LSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRVTLLGDA-----AHPMTQYMAQGACMALEDAVTLGKALE 321 (396)
T ss_pred HHHHcCCChHHHHHHhcCCceeEccccCCCcccccccCcEEEEecc-----cccCCcchhccHHHHHHHHHHHHHHHH
Confidence 66666655544220000011110 011223345566643 466678889999999999999999884
No 59
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.62 E-value=5.1e-14 Score=135.05 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=97.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCC-cc-ccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH--HHhC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSV-AC-AASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA--EELN 128 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~-~~-~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~ 128 (429)
.+||+|||||++|+++|+.|+++|++|+|+|+... .. +.... .....+...+.++++++. +++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~------------~r~~~l~~~~~~~L~~lGl~~~l~ 71 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPD------------VRVSALSRSSEHILRNLGAWQGIE 71 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCC------------cceecccHHHHHHHHhCCchhhhh
Confidence 57999999999999999999999999999999631 11 00000 000122334445554421 1111
Q ss_pred CCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEE
Q 014198 129 GPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVV 208 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~ 208 (429)
.. .......+.+..... . .... ++.. ..+.......+....+.+.|.+.+.+..|++++
T Consensus 72 ~~---~~~~~~~~~~~~~~~-~-----------~~~~-~~~~-----~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~ 130 (405)
T PRK08850 72 AR---RAAPYIAMEVWEQDS-F-----------ARIE-FDAE-----SMAQPDLGHIVENRVIQLALLEQVQKQDNVTLL 130 (405)
T ss_pred hh---hCCcccEEEEEeCCC-C-----------ceEE-Eecc-----ccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEE
Confidence 00 000011111111100 0 0000 0000 000111234566677888888888333579999
Q ss_pred Ece-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcc
Q 014198 209 IGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASM 256 (429)
Q Consensus 209 ~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~ 256 (429)
+++ |++++.+ ++.+ .|++.+|++++||.||.|+|.+|.....++..
T Consensus 131 ~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~ 177 (405)
T PRK08850 131 MPARCQSIAVG-ESEA-WLTLDNGQALTAKLVVGADGANSWLRRQMDIP 177 (405)
T ss_pred cCCeeEEEEee-CCeE-EEEECCCCEEEeCEEEEeCCCCChhHHHcCCC
Confidence 999 9999876 4433 47777888999999999999998776655543
No 60
>PRK07045 putative monooxygenase; Reviewed
Probab=99.62 E-value=1.8e-13 Score=130.59 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=96.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
..+||+|||||++|+++|..|+++|++|+|+|+.+...... . ...+.+. . ....+.+.+++.+.+....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~-~~~l~~~-----~--~~~L~~lGl~~~~~~~~~~-- 72 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQN-G-ADLLKPS-----G--IGVVRAMGLLDDVFAAGGL-- 72 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCC-c-ccccCcc-----H--HHHHHHcCCHHHHHhcccc--
Confidence 46799999999999999999999999999999997221100 0 0011110 0 0011111222332221110
Q ss_pred CcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce
Q 014198 132 NYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK 211 (429)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~ 211 (429)
....+.+..+.... . ...+.. . ........+....+.+.|.+.+....|+++++++
T Consensus 73 -----~~~~~~~~~~g~~~---------~--~~~~~~---~-----~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~ 128 (388)
T PRK07045 73 -----RRDAMRLYHDKELI---------A--SLDYRS---A-----SALGYFILIPCEQLRRLLLAKLDGLPNVRLRFET 128 (388)
T ss_pred -----cccceEEecCCcEE---------E--EecCCc---c-----ccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCC
Confidence 00001111000000 0 000000 0 0001123456678888888887345689999999
Q ss_pred -EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 212 -VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 212 -v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
|++++.++++.++.|++++|+++.+|.||.|+|.+|....
T Consensus 129 ~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 129 SIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred EEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 9999987566556688888889999999999999997665
No 61
>PRK11445 putative oxidoreductase; Provisional
Probab=99.61 E-value=6.9e-13 Score=124.47 Aligned_cols=157 Identities=18% Similarity=0.077 Sum_probs=90.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Cc-cccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VA-CAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~-~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
+||+|||||++|+++|+.|++. ++|+|+|+.+ .. .+.....++.+.+ .+.+.+++ ++...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~-------------~~~~~L~~----lgl~~ 63 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAP-------------DAQKSFAK----DGLTL 63 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCH-------------HHHHHHHH----cCCCC
Confidence 7999999999999999999999 9999999987 21 1111223333322 22233332 33311
Q ss_pred CcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce
Q 014198 132 NYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK 211 (429)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~ 211 (429)
............ ...+.+-+. . .. .+......+++..+.+.|.+.+ +.|+++++++
T Consensus 64 ~~~~~~~~~~~~-----------------~~~~~~~~~--~-~~--~~~~~~~~i~R~~~~~~L~~~~--~~gv~v~~~~ 119 (351)
T PRK11445 64 PKDVIANPQIFA-----------------VKTIDLANS--L-TR--NYQRSYINIDRHKFDLWLKSLI--PASVEVYHNS 119 (351)
T ss_pred Ccceeeccccce-----------------eeEeccccc--c-hh--hcCCCcccccHHHHHHHHHHHH--hcCCEEEcCC
Confidence 000000000000 000000000 0 00 0011224588888888887743 5689999999
Q ss_pred -EEEEEEccCCcEEEEEE-eCCe--EEEcCEEEEcCCCCchHHHhhh
Q 014198 212 -VERVGVGEGGRVESVMI-EGGR--VVESDAVVLALGPWSGKFELLA 254 (429)
Q Consensus 212 -v~~i~~~~~g~v~~v~~-~~g~--~i~ad~vV~a~G~~s~~~~~~~ 254 (429)
+++++.+ ++.+ .|.+ .++. +++||.||.|+|..|.....+.
T Consensus 120 ~v~~i~~~-~~~~-~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~ 164 (351)
T PRK11445 120 LCRKIWRE-DDGY-HVIFRADGWEQHITARYLVGADGANSMVRRHLY 164 (351)
T ss_pred EEEEEEEc-CCEE-EEEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence 9999876 4433 3543 3453 6899999999999987655443
No 62
>PRK06184 hypothetical protein; Provisional
Probab=99.61 E-value=1.2e-13 Score=135.95 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=95.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH--HHhCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA--EELNGP 130 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~ 130 (429)
++||+|||||++|+++|+.|+++|++|+||||.+..... .+.. .+..+++++++++. +++...
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~-~ra~--------------~l~~~~~e~l~~lGl~~~l~~~ 67 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPG-SRGK--------------GIQPRTQEVFDDLGVLDRVVAA 67 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcC-ccce--------------eecHHHHHHHHHcCcHHHHHhc
Confidence 579999999999999999999999999999998621111 1111 11223334444321 111100
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
...+. ....+. ..... .. ..+..... ......++....+....+.+.|.+.+ .+.|++++++
T Consensus 68 -~~~~~--~~~~~~-~~~~~---------~~--~~~~~~~~--~~~~~~~~~~~~i~q~~le~~L~~~l-~~~gv~i~~~ 129 (502)
T PRK06184 68 -GGLYP--PMRIYR-DDGSV---------AE--SDMFAHLE--PTPDEPYPLPLMVPQWRTERILRERL-AELGHRVEFG 129 (502)
T ss_pred -Ccccc--ceeEEe-CCceE---------EE--eecccccc--CCCCCCCCcceecCHHHHHHHHHHHH-HHCCCEEEeC
Confidence 00000 000000 00000 00 00000000 00000012223455667778888888 7779999999
Q ss_pred e-EEEEEEccCCcEEEEEE---eCCeEEEcCEEEEcCCCCchHHHhhhccc
Q 014198 211 K-VERVGVGEGGRVESVMI---EGGRVVESDAVVLALGPWSGKFELLASMF 257 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~---~~g~~i~ad~vV~a~G~~s~~~~~~~~~~ 257 (429)
+ |++++.+ ++.+. +++ .++.+++||.||.|+|.+|.....++...
T Consensus 130 ~~v~~i~~~-~~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~ 178 (502)
T PRK06184 130 CELVGFEQD-ADGVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALGIGF 178 (502)
T ss_pred cEEEEEEEc-CCcEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCc
Confidence 9 9999987 44443 333 44568999999999999997665655443
No 63
>PLN02985 squalene monooxygenase
Probab=99.61 E-value=1.3e-12 Score=127.77 Aligned_cols=169 Identities=19% Similarity=0.192 Sum_probs=95.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
...+||+|||||++|+++|+.|+++|++|+|+||....... ..+-. +...+.+.++++ +..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~--~~g~~-------------L~p~g~~~L~~L----Gl~ 101 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPER--MMGEF-------------MQPGGRFMLSKL----GLE 101 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCcc--ccccc-------------cCchHHHHHHHc----CCc
Confidence 45789999999999999999999999999999997521100 00101 111122333332 221
Q ss_pred CC---cCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEE
Q 014198 131 DN---YGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEV 207 (429)
Q Consensus 131 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v 207 (429)
.. ........+.+..+.... ...+...+ ...........++...+.+.|.+.+.+..|+++
T Consensus 102 d~l~~~~~~~~~~~~v~~~g~~~----------~~~~~~~~------~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i 165 (514)
T PLN02985 102 DCLEGIDAQKATGMAVYKDGKEA----------VAPFPVDN------NNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL 165 (514)
T ss_pred chhhhccCcccccEEEEECCEEE----------EEeCCCCC------cCCCcccceeeeecHHHHHHHHHHHHhCCCeEE
Confidence 00 000011111111110000 00000000 000111334567888999999999833457999
Q ss_pred EEceEEEEEEccCCcEEEEEEe--CCe--EEEcCEEEEcCCCCchHHHhhhc
Q 014198 208 VIGKVERVGVGEGGRVESVMIE--GGR--VVESDAVVLALGPWSGKFELLAS 255 (429)
Q Consensus 208 ~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~ad~vV~a~G~~s~~~~~~~~ 255 (429)
+.++++++..+ ++.+.+|+.. +|+ ++.||.||.|+|.+|.....++.
T Consensus 166 ~~gtvv~li~~-~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~ 216 (514)
T PLN02985 166 EEGTVKSLIEE-KGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLND 216 (514)
T ss_pred EeeeEEEEEEc-CCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhcc
Confidence 87777777665 5656566653 454 46799999999999987775543
No 64
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.61 E-value=2.6e-13 Score=128.66 Aligned_cols=293 Identities=13% Similarity=0.084 Sum_probs=146.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHH------HHHHHHHh
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNL------HRSLAEEL 127 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~ 127 (429)
+||+|||||++|+++|+.|++.|++|+|+|+.+.........+.. ..+...+.++ |+.+.+ .
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~-----------~~l~~~~~~~L~~lGl~~~l~~-~ 69 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRT-----------TALTPHSKNFLFSIDIWEELEK-F 69 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceE-----------EEeCHHHHHHHHHCCcHHHHHh-h
Confidence 689999999999999999999999999999975221110000111 1122222233 333322 1
Q ss_pred CCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhc-CcE
Q 014198 128 NGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDY-GLE 206 (429)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~-Gv~ 206 (429)
... +.. +.+...... ....+ +. .........+....+.+.|.+.+ .+. +++
T Consensus 70 ~~~----~~~---~~~~~~~g~------------~~~~~-~~-------~~~~~~g~~v~r~~L~~~L~~~~-~~~~~v~ 121 (374)
T PRK06617 70 VAE----MQD---IYVVDNKAS------------EILDL-RN-------DADAVLGYVVKNSDFKKILLSKI-TNNPLIT 121 (374)
T ss_pred cCC----CcE---EEEEECCCc------------eEEEe-cC-------CCCCCcEEEEEHHHHHHHHHHHH-hcCCCcE
Confidence 110 111 111110000 00000 00 00112346788899999999998 555 599
Q ss_pred EEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccccccc-ceeeEEEecCCCCCCCCCceeEe
Q 014198 207 VVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSG-LKAHSIILEPKEADAITPHALFL 284 (429)
Q Consensus 207 v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 284 (429)
+++++ ++++..+ ++.+ .+.++++ +++||.||.|+|.+|.....++......+ .....+.++... + .....+
T Consensus 122 ~~~~~~v~~i~~~-~~~v-~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~--~-~~~~~~- 194 (374)
T PRK06617 122 LIDNNQYQEVISH-NDYS-IIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPYQTALTFNIKHEK--P-HENCAM- 194 (374)
T ss_pred EECCCeEEEEEEc-CCeE-EEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccCCeEEEEEEeccC--C-CCCEEE-
Confidence 99999 9999877 4444 3677655 89999999999999988764433221112 222222333211 1 111111
Q ss_pred eeccCCCCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHhccccCcccccceeee---e
Q 014198 285 SYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVA-RTVSSHLGEEAQVKAEQA---C 360 (429)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~p~l~~~~~~~~~~~---g 360 (429)
.+....| ...++|.+++....+..+..... .. .....+.+.+..+++.. ...+..+....++..... -
T Consensus 195 ~~~~~~g------~~~~lPl~~~~~~~~vw~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 266 (374)
T PRK06617 195 EHFLPLG------PFALLPLKDQYASSVIWSTSSDQ-AA-LIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARI 266 (374)
T ss_pred EEecCCC------CEEEeECCCCCeEEEEEeCCHHH-HH-HHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeee
Confidence 1111112 24566777664211111111100 00 00111223333332221 111111110000000000 1
Q ss_pred ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 361 FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 361 ~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
......++..++|.. .+....+.|+|+.++.--+..+++.+
T Consensus 267 ~~~~~~grv~LiGDA-----AH~~~P~~GQG~n~gl~Da~~La~~L 307 (374)
T PRK06617 267 ANRYFHNRIVLIADT-----AHTVHPLAGQGLNQGIKDIEILSMIV 307 (374)
T ss_pred ccceecCCEEEEEcc-----cccCCCCccccHHHHHHHHHHHHHHH
Confidence 122234556677754 36667788999999999999999988
No 65
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.61 E-value=8.5e-13 Score=126.94 Aligned_cols=160 Identities=23% Similarity=0.302 Sum_probs=92.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHH-hCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEE-LNG 129 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ 129 (429)
...+||+|||||++|+++|+.|+++|++|+|+||.... ....++.+.... .+.+.+...+... ...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~---~k~cgg~i~~~~----------l~~lgl~~~~~~~~i~~ 103 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN---AKPCGGAIPLCM----------VGEFDLPLDIIDRKVTK 103 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC---CCCccccccHhH----------HhhhcCcHHHHHHHhhh
Confidence 55799999999999999999999999999999998521 111223222110 0001111111110 000
Q ss_pred CCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEE
Q 014198 130 PDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVI 209 (429)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~ 209 (429)
..+...+...+.. . .........+.+++..|.+.|.+.+ .+.|++++.
T Consensus 104 ---~~~~~p~~~~v~~----------------------~------~~~~~~~~~~~v~R~~~d~~L~~~A-~~~Ga~~~~ 151 (450)
T PLN00093 104 ---MKMISPSNVAVDI----------------------G------KTLKPHEYIGMVRREVLDSFLRERA-QSNGATLIN 151 (450)
T ss_pred ---heEecCCceEEEe----------------------c------ccCCCCCeEEEecHHHHHHHHHHHH-HHCCCEEEe
Confidence 0000000000000 0 0000012334689999999999999 888999987
Q ss_pred ceEEEEEEcc-CCcEEEEEEeC---------CeEEEcCEEEEcCCCCchHHHhhhc
Q 014198 210 GKVERVGVGE-GGRVESVMIEG---------GRVVESDAVVLALGPWSGKFELLAS 255 (429)
Q Consensus 210 ~~v~~i~~~~-~g~v~~v~~~~---------g~~i~ad~vV~a~G~~s~~~~~~~~ 255 (429)
++++++.... ++....|++.+ +.+++||.||.|+|.+|.....++.
T Consensus 152 ~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~ 207 (450)
T PLN00093 152 GLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDA 207 (450)
T ss_pred ceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCC
Confidence 6677776431 12222344422 2479999999999999977665543
No 66
>PRK07190 hypothetical protein; Provisional
Probab=99.61 E-value=1.9e-13 Score=132.95 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=96.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHH------HHHHHH
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNL------HRSLAE 125 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~------~~~~~~ 125 (429)
..+||+|||||++|+++|+.|+++|.+|+||||.+... ..+++.+ +...++++ ++++..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~-~~gra~~--------------l~~~tle~L~~lGl~~~l~~ 68 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPL-EVGRADA--------------LNARTLQLLELVDLFDELYP 68 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccc-ccccceE--------------eCHHHHHHHHhcChHHHHHh
Confidence 45899999999999999999999999999999987221 1111111 11222233 333322
Q ss_pred HhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCc
Q 014198 126 ELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGL 205 (429)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv 205 (429)
. +. .+ ... .+... ... ......+.+. .. ....+....+....+.+.|.+.+ .+.|+
T Consensus 69 ~-~~--~~--~~~---~~~~~-g~~---------i~~~~~~~~~--~~---~~~~~~~~~~~q~~le~~L~~~~-~~~Gv 124 (487)
T PRK07190 69 L-GK--PC--NTS---SVWAN-GKF---------ISRQSSWWEE--LE---GCLHKHFLMLGQSYVEKLLDDKL-KEAGA 124 (487)
T ss_pred h-Cc--cc--eeE---EEecC-Cce---------EeeccccCcc--CC---cCCCCceEecCHHHHHHHHHHHH-HHCCC
Confidence 1 11 00 000 00000 000 0000000000 00 00011122344456667777778 77899
Q ss_pred EEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhccccc
Q 014198 206 EVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRV 259 (429)
Q Consensus 206 ~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~ 259 (429)
+++.++ |++++.+ ++.+. +.+.++++++|+.||.|+|.+|.....++...+.
T Consensus 125 ~v~~~~~v~~l~~~-~~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g 177 (487)
T PRK07190 125 AVKRNTSVVNIELN-QAGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEI 177 (487)
T ss_pred EEEeCCEEEEEEEc-CCeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcCCCccc
Confidence 999999 9999987 44333 4555677899999999999998777666655443
No 67
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.60 E-value=3.7e-13 Score=127.06 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=116.5
Q ss_pred cceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccc
Q 014198 182 TTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVS 260 (429)
Q Consensus 182 ~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~ 260 (429)
.+..++...+.+.+.+.+ .+.| .++.+. |++|+.. ++ ...|++.+|.+++|+.||.|+|..+..- .....+
T Consensus 80 ~Y~~i~~~~f~~~l~~~~-~~~~-~~~~~~~V~~i~~~-~~-~~~v~~~~g~~i~a~~VvDa~g~~~~~~----~~~~~Q 151 (374)
T PF05834_consen 80 PYCMIDRADFYEFLLERA-AAGG-VIRLNARVTSIEET-GD-GVLVVLADGRTIRARVVVDARGPSSPKA----RPLGLQ 151 (374)
T ss_pred ceEEEEHHHHHHHHHHHh-hhCC-eEEEccEEEEEEec-Cc-eEEEEECCCCEEEeeEEEECCCcccccc----cccccc
Confidence 446899999999999999 6544 566667 9999987 33 2457788888999999999999665521 112223
Q ss_pred cceeeEEEecCCCCCCCCCceeEeeeccCCC-CCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHH-HHHH
Q 014198 261 GLKAHSIILEPKEADAITPHALFLSYYPAQG-EGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASI-QVLK 338 (429)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~-~~l~ 338 (429)
.-.|..+.++.+. --.....++++..... . .+...|+.|...++.+| ..|.... ....+.+.+ +.+.
T Consensus 152 ~f~G~~v~~~~~~--f~~~~~~lMD~r~~~~~~--~~~F~Y~lP~~~~~alv-E~T~fs~------~~~~~~~~~~~~l~ 220 (374)
T PF05834_consen 152 HFYGWEVETDEPV--FDPDTATLMDFRVPQSAD--GPSFLYVLPFSEDRALV-EETSFSP------RPALPEEELKARLR 220 (374)
T ss_pred eeEEEEEeccCCC--CCCCceEEEEecccCCCC--CceEEEEEEcCCCeEEE-EEEEEcC------CCCCCHHHHHHHHH
Confidence 3345555555432 1234456677664332 1 24456677877776644 4332211 111334444 4555
Q ss_pred HHHHHhccccCcccccceeeeeecccCCCCCc-eeccCCCCCcEEEEe---cC----CCccchhhHHHHHHHHHHHhc
Q 014198 339 RVARTVSSHLGEEAQVKAEQACFLPCTDDGVP-VIGELPGIKGCYVGT---GH----NCWGILNGPATGAALAELVMD 408 (429)
Q Consensus 339 ~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~~p-~ig~~~~~~~~~~~~---G~----~~~G~~~a~~~a~~la~~i~~ 408 (429)
+.++.+ .+.. .++.+.-.|..|++....+ ..+ ++++.++ |. .|.+|..+.-.+..+|+.+..
T Consensus 221 ~~l~~~--g~~~-~~i~~~E~G~IPm~~~~~~~~~~-----~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 221 RYLERL--GIDD-YEILEEERGVIPMTTGGFPPRFG-----QRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred HHHHHc--CCCc-eeEEEeecceeecccCCCccccC-----CCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 555552 4444 6788889999999543221 111 2222221 11 123456666677788888854
No 68
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.59 E-value=3e-13 Score=120.05 Aligned_cols=216 Identities=19% Similarity=0.180 Sum_probs=127.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc-chhhh-HHHHHHHHHHHHHhC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP-LSSLA-RASFNLHRSLAEELN 128 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~-~~~l~-~~~~~~~~~~~~~~~ 128 (429)
+...||+|||||++|.++|+.|++.|.+|.+|||+. ..+.. .-++. .-+...+.++.-+-.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl-----------------~EPdRivGEllQPGG~~~L~~LGl~Dc 105 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL-----------------SEPDRIVGELLQPGGYLALSKLGLEDC 105 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc-----------------ccchHHHHHhcCcchhHHHHHhCHHHH
Confidence 457899999999999999999999999999999985 11100 00000 001122222211111
Q ss_pred CCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEE
Q 014198 129 GPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVV 208 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~ 208 (429)
.+ .++-++...+.+..+..+.+ +.+-. ......+.+-.++..++++.|++.+....+|++.
T Consensus 106 ve-~IDAQ~v~Gy~ifk~gk~v~------------~pyP~------~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~e 166 (509)
T KOG1298|consen 106 VE-GIDAQRVTGYAIFKDGKEVD------------LPYPL------KNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLE 166 (509)
T ss_pred hh-cccceEeeeeEEEeCCceee------------ccCCC------cCCCCCcccceeeccHHHHHHHHHHhcCCCeEEe
Confidence 10 23344444444444332211 11100 0111234456678889999999998778899999
Q ss_pred EceEEEEEEccCCcEEEEEEeC--Ce--EEEcCEEEEcCCCCchHHH-hhhcccc-cccceeeEEEecCCCCCCCCCcee
Q 014198 209 IGKVERVGVGEGGRVESVMIEG--GR--VVESDAVVLALGPWSGKFE-LLASMFR-VSGLKAHSIILEPKEADAITPHAL 282 (429)
Q Consensus 209 ~~~v~~i~~~~~g~v~~v~~~~--g~--~i~ad~vV~a~G~~s~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 282 (429)
.++|.++.++ ++.|.+|+..+ ++ +..|...|+|+|-+|+-.. ....+.+ +...-..++........+-..+.+
T Consensus 167 eGtV~sLlee-~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~hghvI 245 (509)
T KOG1298|consen 167 EGTVKSLLEE-EGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNHGHVI 245 (509)
T ss_pred eeeHHHHHhc-cCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccccchheeeeeecCCCCCCCCcceEE
Confidence 9999998887 78889998864 23 4568999999999998877 3333444 333323333333333123333444
Q ss_pred EeeeccCCCCCCCCCCCceEecCCCcEEEec
Q 014198 283 FLSYYPAQGEGGKPMDPEVYPRPTGEVYLCG 313 (429)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~g 313 (429)
+.+ +....+||....++.+.-
T Consensus 246 L~~----------pspil~Y~ISStEvRcl~ 266 (509)
T KOG1298|consen 246 LSK----------PSPILVYQISSTEVRCLV 266 (509)
T ss_pred ecC----------CCcEEEEEecchheEEEE
Confidence 433 344568887665555443
No 69
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.58 E-value=3.8e-14 Score=125.79 Aligned_cols=145 Identities=28% Similarity=0.322 Sum_probs=99.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.++||+|||||++|+++|+.|++.|++|+|+|+.. ++++.++ +|.+.... . .. .....+.++++..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~--gg~~~~~~----~---v~----~~~~~~l~~~gv~ 90 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWG--GGMLFNKI----V---VQ----EEADEILDEFGIR 90 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc--Cccccccc----c---ch----HHHHHHHHHCCCC
Confidence 46899999999999999999999999999999987 4443321 22211100 0 00 1122333334431
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
+... ......+++..+...|.+.+ .+.|++++++
T Consensus 91 ----~~~~-----------------------------------------~~g~~~vd~~~l~~~L~~~A-~~~Gv~I~~~ 124 (257)
T PRK04176 91 ----YKEV-----------------------------------------EDGLYVADSVEAAAKLAAAA-IDAGAKIFNG 124 (257)
T ss_pred ----ceee-----------------------------------------cCcceeccHHHHHHHHHHHH-HHcCCEEEcC
Confidence 1000 01224567889999999999 8889999999
Q ss_pred e-EEEEEEccCCcEEEEEEeC-----------CeEEEcCEEEEcCCCCchHHHhhhc
Q 014198 211 K-VERVGVGEGGRVESVMIEG-----------GRVVESDAVVLALGPWSGKFELLAS 255 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~~-----------g~~i~ad~vV~a~G~~s~~~~~~~~ 255 (429)
+ |+++..++++++.++.+.. ...++|+.||+|||+++.....+..
T Consensus 125 t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~ 181 (257)
T PRK04176 125 VSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLAR 181 (257)
T ss_pred ceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHH
Confidence 9 9999876354777776531 2479999999999999987764433
No 70
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.58 E-value=1.7e-13 Score=132.40 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=100.1
Q ss_pred CcEEEECCCHHHHHHHHHHHH----CCCcEEEEcCCC-Ccccc-c-cccCCeeeeccCCCCcchhhhHHHHHHHHHHH--
Q 014198 54 KHVAVCGGGIIGVCTAYFLAK----KGAAVTLIEKSS-VACAA-S-GKAGGFLALDWCDGGPLSSLARASFNLHRSLA-- 124 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~----~G~~V~lie~~~-~~~~~-s-~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 124 (429)
+||+|||||++|+++|+.|++ +|++|+|||+.+ +.... . ....+. .......+...+.++++++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~------~~~R~~~l~~~s~~~L~~lG~~ 74 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGP------YSNRVSSITPASISFFKKIGAW 74 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCC------CCCCeEEcCHHHHHHHHHcCch
Confidence 699999999999999999999 899999999954 21100 0 000000 00011223344445554421
Q ss_pred HHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhc-
Q 014198 125 EELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDY- 203 (429)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~- 203 (429)
+++.. ........+.+...... ....+ +.. .+..+....++...+.+.|.+.+ .+.
T Consensus 75 ~~l~~---~~~~~~~~~~~~~~~~~------------~~~~~-~~~------~~~~~~~~~i~~~~l~~~L~~~~-~~~~ 131 (437)
T TIGR01989 75 DHIQS---DRIQPFGRMQVWDGCSL------------ALIRF-DRD------NGKEDMACIIENDNIQNSLYNRL-QEYN 131 (437)
T ss_pred hhhhh---hcCCceeeEEEecCCCC------------ceEEe-ecC------CCCCceEEEEEHHHHHHHHHHHH-HhCC
Confidence 11110 00001111111110000 00000 000 01112345678888999999998 655
Q ss_pred --CcEEEEce-EEEEEEc-----cCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccc
Q 014198 204 --GLEVVIGK-VERVGVG-----EGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFR 258 (429)
Q Consensus 204 --Gv~v~~~~-v~~i~~~-----~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~ 258 (429)
++++++++ |++++.+ +++....|++.+|++++||.||.|+|.+|.....++....
T Consensus 132 ~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~ 194 (437)
T TIGR01989 132 GDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTT 194 (437)
T ss_pred CCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCcc
Confidence 49999999 9999742 1222245777788899999999999999988776555443
No 71
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.58 E-value=1.4e-13 Score=129.96 Aligned_cols=301 Identities=17% Similarity=0.108 Sum_probs=143.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHH------HHHHh
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRS------LAEEL 127 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~ 127 (429)
+||+|||||++|+++|..|+++|++|+||||........ .+ ..+...+++++++ +.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~--~~-------------~~l~~~~~~~l~~lgl~~~~~~~~ 66 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG--RG-------------IGLSPNSLRILQRLGLLDEILARG 66 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS--SS-------------EEEEHHHHHHHHHTTEHHHHHHHS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccc--cc-------------cccccccccccccccchhhhhhhc
Confidence 699999999999999999999999999999987321111 11 1122233344443 22211
Q ss_pred CCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEE
Q 014198 128 NGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEV 207 (429)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v 207 (429)
.. .......+...-........... ....+. .....+....++...+.+.|.+.+ ++.|+++
T Consensus 67 ~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~r~~l~~~L~~~~-~~~gv~i 128 (356)
T PF01494_consen 67 SP------HEVMRIFFYDGISDSRIWVENPQ-IREDME----------IDTKGPYGHVIDRPELDRALREEA-EERGVDI 128 (356)
T ss_dssp EE------ECEEEEEEEEETTTSEEEEEEEE-EEEECH----------STSGSSCEEEEEHHHHHHHHHHHH-HHHTEEE
T ss_pred cc------ccceeeEeecccCCccceeeecc-cceeee----------ccccCCcchhhhHHHHHHhhhhhh-hhhhhhh
Confidence 00 00000000000000000000000 000000 001123456678888999999999 7789999
Q ss_pred EEce-EEEEEEccCCcEEEEEEe--CC--eEEEcCEEEEcCCCCchHHHhhhcccccccce--eeEE--EecCCCCCCCC
Q 014198 208 VIGK-VERVGVGEGGRVESVMIE--GG--RVVESDAVVLALGPWSGKFELLASMFRVSGLK--AHSI--ILEPKEADAIT 278 (429)
Q Consensus 208 ~~~~-v~~i~~~~~g~v~~v~~~--~g--~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~ 278 (429)
.+++ +++++.+ ++.+..+... +| .+++||.||.|+|.+|.....++...+..... ...+ ...... ..+.
T Consensus 129 ~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 206 (356)
T PF01494_consen 129 RFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDL-SDPW 206 (356)
T ss_dssp EESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHS-HTTT
T ss_pred eeeeeccccccc-ccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccccc-cccc
Confidence 9999 9999887 4443322222 23 37899999999999998887555443322111 1111 122211 0111
Q ss_pred CceeEeeeccCCCCCCCCCCCceEecCCCc---EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccc
Q 014198 279 PHALFLSYYPAQGEGGKPMDPEVYPRPTGE---VYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVK 355 (429)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~ 355 (429)
....+..... .....++|..++. .++....... ..........+.+.+.+...+........+.
T Consensus 207 ~~~~~~~~~~-------~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (356)
T PF01494_consen 207 EDHCFIYSPP-------SGGFAIIPLENGDRSRFVWFLPFDES------KEERPEEFSPEELFANLPEIFGPDLLETEID 273 (356)
T ss_dssp SCEEEEEEET-------TEEEEEEEETTTTEEEEEEEEETTTT------TCCSTHCHHHHHHHHHHHHHHHTCHHHHEEE
T ss_pred cccccccccc-------ccceeEeeccCCccceEEEeeecccc------ccccccccccccccccccccccccccccccc
Confidence 1122222111 1112466765521 2222211111 0111222223444444444332111001110
Q ss_pred --eee---ee-ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 356 --AEQ---AC-FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 356 --~~~---~g-~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
..| .. ..+...++..+||.. .+....++|+|+..|..-|..|++.|.
T Consensus 274 ~~~~~~~~~~~~~~~~~grv~LiGDA-----Ah~~~P~~GqG~n~Ai~da~~La~~L~ 326 (356)
T PF01494_consen 274 EISAWPIPQRVADRWVKGRVLLIGDA-----AHAMDPFSGQGINMAIEDAAALAELLA 326 (356)
T ss_dssp EEEEEEEEEEEESSSEETTEEE-GGG-----TEEE-CCTSHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccceeEEeccc-----eeeecccccCCCCcccccHHHHHHHHH
Confidence 111 11 112334556678855 488888999999999998888887763
No 72
>PRK06753 hypothetical protein; Provisional
Probab=99.58 E-value=5.9e-13 Score=126.47 Aligned_cols=155 Identities=20% Similarity=0.287 Sum_probs=91.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHH--HHHhCCCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSL--AEELNGPDN 132 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~ 132 (429)
||+|||||++|+++|..|+++|++|+|+||.+.... .+ .|+ .+...+++.++.+ .+.+...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~g--~gi------------~l~~~~~~~L~~~gl~~~~~~~-- 64 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE-VG--AGI------------GIGDNVIKKLGNHDLAKGIKNA-- 64 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc-cc--cce------------eeChHHHHHHHhcChHHHHHhc--
Confidence 799999999999999999999999999999972211 00 110 1111222222221 1111000
Q ss_pred cCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-
Q 014198 133 YGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK- 211 (429)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~- 211 (429)
. .....+.+..... ..+..+. .........++...+.+.|.+.+ . +.++++++
T Consensus 65 -~-~~~~~~~~~~~~g-------------~~~~~~~--------~~~~~~~~~i~R~~l~~~L~~~~-~--~~~i~~~~~ 118 (373)
T PRK06753 65 -G-QILSTMNLLDDKG-------------TLLNKVK--------LKSNTLNVTLHRQTLIDIIKSYV-K--EDAIFTGKE 118 (373)
T ss_pred -C-CcccceeEEcCCC-------------CEEeecc--------cccCCccccccHHHHHHHHHHhC-C--CceEEECCE
Confidence 0 0001111110000 0000000 00012234577888888888877 4 46899999
Q ss_pred EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhh
Q 014198 212 VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLA 254 (429)
Q Consensus 212 v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~ 254 (429)
|++++.+ ++.+ .|++++|.++++|.||.|+|.+|.....++
T Consensus 119 v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 119 VTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred EEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 9999876 5554 467778889999999999999998776443
No 73
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.57 E-value=4.1e-14 Score=127.48 Aligned_cols=153 Identities=22% Similarity=0.204 Sum_probs=96.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeec--------cCCCC---c--chhhhHHHH
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALD--------WCDGG---P--LSSLARASF 117 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~--------~~~~~---~--~~~l~~~~~ 117 (429)
+.+||+|||||++|+++|..++++|++|+|+|+.+ ++.----..+|-++.. ....+ . ...+.....
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 36899999999999999999999999999999998 5421111111111110 00001 0 111112222
Q ss_pred HHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHH
Q 014198 118 NLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLN 197 (429)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~ 197 (429)
+-+..|...++. .+.....|.++... .....+++.|++
T Consensus 82 ~d~i~~~e~~Gi--~~~e~~~Gr~Fp~s----------------------------------------dkA~~Iv~~ll~ 119 (408)
T COG2081 82 EDFIDWVEGLGI--ALKEEDLGRMFPDS----------------------------------------DKASPIVDALLK 119 (408)
T ss_pred HHHHHHHHhcCC--eeEEccCceecCCc----------------------------------------cchHHHHHHHHH
Confidence 233334444444 11111122211111 123578899999
Q ss_pred HHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchH
Q 014198 198 KAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGK 249 (429)
Q Consensus 198 ~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~ 249 (429)
++ ++.||++++++ |.+++.+ + ....+.+.++.+++||.+|+|+|+.|-.
T Consensus 120 ~~-~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 120 EL-EALGVTIRTRSRVSSVEKD-D-SGFRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred HH-HHcCcEEEecceEEeEEec-C-ceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence 99 99999999999 9999987 4 2355788888789999999999966654
No 74
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.57 E-value=3.8e-13 Score=133.46 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=95.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHH--HHHhCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSL--AEELNG 129 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~ 129 (429)
..+||+|||||++|+++|+.|+++|++|+||||....... .+. ..+..++.++++++ .+++..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~-~ra--------------~~l~~~~~~~L~~lGl~~~l~~ 73 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL-PRA--------------VGIDDEALRVLQAIGLADEVLP 73 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-Cce--------------eeeCHHHHHHHHHcCChhHHHh
Confidence 4689999999999999999999999999999998721110 010 11122333444332 111100
Q ss_pred CCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhh-cCcEEE
Q 014198 130 PDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVND-YGLEVV 208 (429)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~-~Gv~v~ 208 (429)
......+ ..+...... ....++... ....+ .+....++...+.+.|.+.+ .+ .|++++
T Consensus 74 ---~~~~~~~-~~~~~~~g~-------------~~~~~~~~~--~~~~g-~~~~~~~~q~~le~~L~~~~-~~~~gv~v~ 132 (538)
T PRK06183 74 ---HTTPNHG-MRFLDAKGR-------------CLAEIARPS--TGEFG-WPRRNAFHQPLLEAVLRAGL-ARFPHVRVR 132 (538)
T ss_pred ---hcccCCc-eEEEcCCCC-------------EEEEEcCCC--CCCCC-CChhccCChHHHHHHHHHHH-HhCCCcEEE
Confidence 0000000 111100000 000000000 00001 12223456667778888887 54 599999
Q ss_pred Ece-EEEEEEccCCcEEEEEEe--CC--eEEEcCEEEEcCCCCchHHHhhhcccc
Q 014198 209 IGK-VERVGVGEGGRVESVMIE--GG--RVVESDAVVLALGPWSGKFELLASMFR 258 (429)
Q Consensus 209 ~~~-v~~i~~~~~g~v~~v~~~--~g--~~i~ad~vV~a~G~~s~~~~~~~~~~~ 258 (429)
+++ |++++++ ++.+ .+++. +| .+++||.||.|+|.+|.....++....
T Consensus 133 ~g~~v~~i~~~-~~~v-~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~ 185 (538)
T PRK06183 133 FGHEVTALTQD-DDGV-TVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFE 185 (538)
T ss_pred cCCEEEEEEEc-CCeE-EEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeee
Confidence 999 9999987 4444 34554 45 479999999999999987765554433
No 75
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.6e-13 Score=112.89 Aligned_cols=144 Identities=26% Similarity=0.315 Sum_probs=101.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.+.||+|||||++||++|++|+++|.||+|+||.. +++|.. . +|++.+..--. +--+.+.++++..
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w-~-GGmlf~~iVv~-----------~~a~~iL~e~gI~ 95 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW-G-GGMLFNKIVVR-----------EEADEILDEFGIR 95 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc-c-cccccceeeec-----------chHHHHHHHhCCc
Confidence 36799999999999999999999999999999998 554443 2 22222211100 2234455555552
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
|+.. .......|+..++..|...+ .+.|++|+..
T Consensus 96 ----ye~~-----------------------------------------e~g~~v~ds~e~~skl~~~a-~~aGaki~n~ 129 (262)
T COG1635 96 ----YEEE-----------------------------------------EDGYYVADSAEFASKLAARA-LDAGAKIFNG 129 (262)
T ss_pred ----ceec-----------------------------------------CCceEEecHHHHHHHHHHHH-HhcCceeeec
Confidence 1111 12345678888899999999 7889999999
Q ss_pred e-EEEEEEccCCcEEEEEEe-----------CCeEEEcCEEEEcCCCCchHHHhhh
Q 014198 211 K-VERVGVGEGGRVESVMIE-----------GGRVVESDAVVLALGPWSGKFELLA 254 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~-----------~g~~i~ad~vV~a~G~~s~~~~~~~ 254 (429)
+ |+++...++.+|.+|.+. |--.++|+.||-|||..+.....+.
T Consensus 130 ~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~ 185 (262)
T COG1635 130 VSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLA 185 (262)
T ss_pred ceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHH
Confidence 9 999987734378887764 2247899999999998887665433
No 76
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.55 E-value=3.1e-12 Score=121.89 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=50.8
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEceEEEEEEc-cCCcEEEEEE--eC-------CeEEEcCEEEEcCCCCchHHHhh
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVG-EGGRVESVMI--EG-------GRVVESDAVVLALGPWSGKFELL 253 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~v~~i~~~-~~g~v~~v~~--~~-------g~~i~ad~vV~a~G~~s~~~~~~ 253 (429)
+.++...+.+.|.+.+ .+.|++++.++++++... ..+....|+. .+ ..+++|+.||.|+|.+|.....+
T Consensus 88 ~~v~R~~~d~~L~~~a-~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 88 GMLRREVLDSFLRRRA-ADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred eeeeHHHHHHHHHHHH-HHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHh
Confidence 4688999999999999 888999988876666532 1222333442 11 24799999999999999766655
Q ss_pred hc
Q 014198 254 AS 255 (429)
Q Consensus 254 ~~ 255 (429)
+.
T Consensus 167 g~ 168 (398)
T TIGR02028 167 DA 168 (398)
T ss_pred CC
Confidence 43
No 77
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.55 E-value=1.8e-12 Score=129.88 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=96.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHH------H
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAK-KGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRS------L 123 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~-~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~------~ 123 (429)
...+||+|||||++|+++|+.|++ .|++|+|||+.+-. ...+++.| +..++++++++ +
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~-~~~grA~g--------------l~prtleiL~~lGl~d~l 94 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR-LELGQADG--------------IACRTMEMFQAFGFAERI 94 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC-CCCCeeeE--------------EChHHHHHHHhccchHHH
Confidence 347899999999999999999999 49999999998621 11111111 12233344443 3
Q ss_pred HHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhc
Q 014198 124 AEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDY 203 (429)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~ 203 (429)
.+.... . .............. . ... .. ...+.. ......+ ...++...+.+.|++.+ .+.
T Consensus 95 ~~~g~~-----~--~~~~~~~~~~~~~~--~-i~r-~~---~~~~~~----~~~~~~~-~~~l~Q~~le~~L~~~l-~~~ 154 (634)
T PRK08294 95 LKEAYW-----I--NETAFWKPDPADPS--T-IVR-TG---RVQDTE----DGLSEFP-HVIVNQARVHDYFLDVM-RNS 154 (634)
T ss_pred Hhhccc-----c--cceEEEcCCCcccc--c-eec-cc---cccccC----CCCCCCc-cEeeCHHHHHHHHHHHH-Hhc
Confidence 221111 0 00000000000000 0 000 00 000000 0001112 24566777888999888 666
Q ss_pred C--cEEEEce-EEEEEEccCC-cEEEEEEe------CC--eEEEcCEEEEcCCCCchHHHhhhcccc
Q 014198 204 G--LEVVIGK-VERVGVGEGG-RVESVMIE------GG--RVVESDAVVLALGPWSGKFELLASMFR 258 (429)
Q Consensus 204 G--v~v~~~~-v~~i~~~~~g-~v~~v~~~------~g--~~i~ad~vV~a~G~~s~~~~~~~~~~~ 258 (429)
| +++.+++ +++++.++++ ..+.|++. +| .+++||.||.|+|++|.....++....
T Consensus 155 g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~ 221 (634)
T PRK08294 155 PTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELR 221 (634)
T ss_pred CCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCcc
Confidence 6 4778899 9999876322 21234443 24 589999999999999988876665443
No 78
>PRK06996 hypothetical protein; Provisional
Probab=99.55 E-value=4.5e-13 Score=128.06 Aligned_cols=300 Identities=13% Similarity=0.096 Sum_probs=148.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC----CcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKG----AAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEE 126 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G----~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (429)
...+||+|||||++|+++|+.|+++| ++|+|+|+....... . ......+...+.+++++
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~-~------------~~r~~~l~~~~~~~L~~---- 71 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASA-N------------DPRAIALSHGSRVLLET---- 71 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCC-C------------CceEEEecHHHHHHHHh----
Confidence 45689999999999999999999987 479999998632100 0 00011233344444444
Q ss_pred hCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcE
Q 014198 127 LNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLE 206 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~ 206 (429)
++....... ......+.... . .....++. ...........++...+.+.|.+.+ .+.|++
T Consensus 72 lg~~~~~~~-~~~~~~~~~~~-~------------~g~~~~~~-----~~~~~~~~g~~v~r~~l~~~L~~~~-~~~g~~ 131 (398)
T PRK06996 72 LGAWPADAT-PIEHIHVSQRG-H------------FGRTLIDR-----DDHDVPALGYVVRYGSLVAALARAV-RGTPVR 131 (398)
T ss_pred CCCchhcCC-cccEEEEecCC-C------------CceEEecc-----cccCCCcCEEEEEhHHHHHHHHHHH-HhCCCE
Confidence 332111000 00011110000 0 00000000 0001112345688889999999999 888999
Q ss_pred EEEce-EEEEEEccCCcEEEEEEeCC---eEEEcCEEEEcCCCC-chHHHhhhccccc--ccceeeEEEecCCCCCCCCC
Q 014198 207 VVIGK-VERVGVGEGGRVESVMIEGG---RVVESDAVVLALGPW-SGKFELLASMFRV--SGLKAHSIILEPKEADAITP 279 (429)
Q Consensus 207 v~~~~-v~~i~~~~~g~v~~v~~~~g---~~i~ad~vV~a~G~~-s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 279 (429)
++.++ +++++.+ +..+ .+.+.++ .+++||.||.|+|.. +.....++..... +........++... + ..
T Consensus 132 ~~~~~~v~~~~~~-~~~v-~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~ 206 (398)
T PRK06996 132 WLTSTTAHAPAQD-ADGV-TLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSA--P-RP 206 (398)
T ss_pred EEcCCeeeeeeec-CCeE-EEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccC--C-CC
Confidence 99999 9999876 3333 3555543 589999999999974 4433333332222 22222222333221 1 11
Q ss_pred ceeEeeeccCCCCCCCCCCCceEecCCCc---EEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccCcccccce
Q 014198 280 HALFLSYYPAQGEGGKPMDPEVYPRPTGE---VYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKA 356 (429)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~ 356 (429)
...+..+ ...| ...++|.+++. ..++-...... .........++..+.+.+.+...++.+.. ..-..
T Consensus 207 ~~~~~~~-~~~G------~~~~lp~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 276 (398)
T PRK06996 207 GWAWERF-THEG------PLALLPLGGPRQADYALVWCCAPDE--AARRAALPDDAFLAELGAAFGTRMGRFTR-IAGRH 276 (398)
T ss_pred CEEEEEe-cCCC------CeEEeECCCCCCCcEEEEEECCHHH--HHHHHcCCHHHHHHHHHHHhccccCceEE-ecceE
Confidence 1222221 1122 23344554432 22211111000 00000111223334454444443332221 00000
Q ss_pred ee---ee-ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 357 EQ---AC-FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 357 ~~---~g-~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
.| .. ......++..++|.. .+....++|+|+.++.--|..+++.|.
T Consensus 277 ~~~l~~~~~~~~~~grv~LiGDA-----AH~~~P~~GQG~n~ai~Da~~La~~L~ 326 (398)
T PRK06996 277 AFPLGLNAARTLVNGRIAAVGNA-----AQTLHPVAGQGLNLGLRDAHTLADALS 326 (398)
T ss_pred EEeeecccccceecCCEEEEEhh-----hccCCcccchhHHHHHHHHHHHHHHHH
Confidence 11 00 011234455567744 366777889999999999999999884
No 79
>PRK05868 hypothetical protein; Validated
Probab=99.55 E-value=5.2e-12 Score=119.39 Aligned_cols=203 Identities=14% Similarity=0.059 Sum_probs=104.8
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhh-hccccccc
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELL-ASMFRVSG 261 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~-~~~~~~~~ 261 (429)
..+....|.+.|.+.+ ..|+++++++ |++++.+ ++.+ .|++.++.++++|.||.|+|.+|.....+ +...+...
T Consensus 100 ~~i~R~~L~~~l~~~~--~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~ 175 (372)
T PRK05868 100 IELLRDDLVELLYGAT--QPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVK 175 (372)
T ss_pred EEEEHHHHHHHHHHhc--cCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCCchHHHHhcCCccccee
Confidence 3566777777665543 4589999999 9999876 4444 47788888999999999999999877633 32211111
Q ss_pred cee-eEEEecCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcE-E-EeccCCCCCCCCCCCCCCCCHHHHHHHH
Q 014198 262 LKA-HSIILEPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEV-Y-LCGMSSEQEVPDDPETVSGDPASIQVLK 338 (429)
Q Consensus 262 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~-i~g~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (429)
..+ +...+..+...+......+. ... .....+||..++.. . +...... .. ..+....+...+.+.
T Consensus 176 ~~g~~~~~~~~~~~~~~~~~~~~~---~g~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~l~ 243 (372)
T PRK05868 176 RLGTHAAIFTVPNFLELDYWQTWH---YGD-----STMAGVYSARNNTEARAALAFMDT-EL---RIDYRDTEAQFAELQ 243 (372)
T ss_pred ecceEEEEEEcCCCCCCCcceEEE---ecC-----CcEEEEEecCCCCceEEEEEEecC-Cc---ccccCChHHHHHHHH
Confidence 112 22232222200111111110 001 11234566554422 1 1111111 00 011111233445565
Q ss_pred HHHHH--hc-cccCccc-ccceeeee---ec---ccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 339 RVART--VS-SHLGEEA-QVKAEQAC---FL---PCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 339 ~~~~~--~~-p~l~~~~-~~~~~~~g---~r---~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
+.+.. +. |.+.+.. .....|.. .. ....++.-++|.. .+....+.|+|+.+|..-|..|++.|.
T Consensus 244 ~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~~grv~LvGDA-----AH~~~P~~GqGa~~AleDa~~La~~L~ 317 (372)
T PRK05868 244 RRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSRGRVALVGDA-----GYCCSPLSGQGTSVALLGAYILAGELK 317 (372)
T ss_pred HHHhhCCCchHHHHhhcccCCceeeccceEEecCCCCCCCeeeeecc-----cccCCCccCccHHHHHHHHHHHHHHHH
Confidence 55542 11 2221100 00001111 11 1234455677744 477788899999999999999999983
No 80
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.55 E-value=5.2e-12 Score=120.59 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=90.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHH------HHHH
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRS------LAEE 126 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~ 126 (429)
..||+|||||++|+++|+.|+++|++|+|+|+.+..........+.+.+ .+.+++++ +.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~-------------~~~~~l~~lGl~~~l~~~ 68 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQ-------------GTVDLLREAGVGERMDRE 68 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECH-------------hHHHHHHHcCChHHHHhc
Confidence 4799999999999999999999999999999997311001001111221 22233333 2211
Q ss_pred hCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcE
Q 014198 127 LNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLE 206 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~ 206 (429)
........+...+... .+.+-+ ..+ ......+....+.+.|++.+ .+.|++
T Consensus 69 ~~~~~~~~~~~~g~~~--------------------~~~~~~-------~~~-~~~~~~~~~~~l~~~Ll~~a-~~~gv~ 119 (392)
T PRK08243 69 GLVHDGIELRFDGRRH--------------------RIDLTE-------LTG-GRAVTVYGQTEVTRDLMAAR-LAAGGP 119 (392)
T ss_pred CCccCcEEEEECCEEE--------------------Eecccc-------ccC-CceEEEeCcHHHHHHHHHHH-HhCCCe
Confidence 1000000010001000 000000 000 01112334567788888888 778999
Q ss_pred EEEce-EEEEEEccCCcEEEEEE-eCC--eEEEcCEEEEcCCCCchHHHhhh
Q 014198 207 VVIGK-VERVGVGEGGRVESVMI-EGG--RVVESDAVVLALGPWSGKFELLA 254 (429)
Q Consensus 207 v~~~~-v~~i~~~~~g~v~~v~~-~~g--~~i~ad~vV~a~G~~s~~~~~~~ 254 (429)
+++++ +++++..++.. ..|++ .+| .+++||.||.|+|.+|.....++
T Consensus 120 v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 120 IRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred EEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 99999 99998621333 23555 355 36899999999999997666443
No 81
>PRK07588 hypothetical protein; Provisional
Probab=99.54 E-value=2.5e-12 Score=122.90 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=52.3
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
..+....+.+.|.+.+ . .|+++++++ |++++.+ ++.+ .|++++|..+++|.||.|+|.+|....
T Consensus 98 ~~i~r~~l~~~L~~~~-~-~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~d~vIgADG~~S~vR~ 162 (391)
T PRK07588 98 TSLPRGDLAAAIYTAI-D-GQVETIFDDSIATIDEH-RDGV-RVTFERGTPRDFDLVIGADGLHSHVRR 162 (391)
T ss_pred EEEEHHHHHHHHHHhh-h-cCeEEEeCCEEeEEEEC-CCeE-EEEECCCCEEEeCEEEECCCCCccchh
Confidence 4677788888888766 4 389999999 9999887 4544 477778888999999999999997765
No 82
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.54 E-value=3.7e-13 Score=118.99 Aligned_cols=143 Identities=25% Similarity=0.297 Sum_probs=96.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.++||+|||||++|+++|+.|+++|++|+|+||.. ++++.+. +|.+.+..... ....++.++++..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~--gg~~~~~~~~~-----------~~~~~~l~~~gi~ 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWG--GGMLFSKIVVE-----------KPAHEILDEFGIR 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccC--CCcceeccccc-----------chHHHHHHHCCCC
Confidence 36899999999999999999999999999999998 4444321 22222111000 1122233334331
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
+...+ ......+...+++.|.+.+ .+.|++++++
T Consensus 87 ----~~~~~-----------------------------------------~g~~~~~~~el~~~L~~~a-~e~GV~I~~~ 120 (254)
T TIGR00292 87 ----YEDEG-----------------------------------------DGYVVADSAEFISTLASKA-LQAGAKIFNG 120 (254)
T ss_pred ----eeecc-----------------------------------------CceEEeeHHHHHHHHHHHH-HHcCCEEECC
Confidence 11100 1123346778899999999 8889999999
Q ss_pred e-EEEEEEccCC-cEEEEEEeC-----------CeEEEcCEEEEcCCCCchHHHhh
Q 014198 211 K-VERVGVGEGG-RVESVMIEG-----------GRVVESDAVVLALGPWSGKFELL 253 (429)
Q Consensus 211 ~-v~~i~~~~~g-~v~~v~~~~-----------g~~i~ad~vV~a~G~~s~~~~~~ 253 (429)
+ |+++..++++ ++.+|.+.. ...++|+.||.|||..+.....+
T Consensus 121 t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 121 TSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred cEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 9 9999876332 677877631 24789999999999888666533
No 83
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.54 E-value=1.5e-13 Score=113.86 Aligned_cols=141 Identities=29% Similarity=0.328 Sum_probs=89.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.++||+|||||++|+++|++|+++|+||+++|+.. ++++.... |+....+.-. +--..+.++++..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G--g~lf~~iVVq-----------~~a~~iL~elgi~ 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG--GMLFNKIVVQ-----------EEADEILDELGIP 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS---CTT---EEEE-----------TTTHHHHHHHT--
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc--ccccchhhhh-----------hhHHHHHHhCCce
Confidence 36899999999999999999999999999999997 55444321 1111111000 1112334445542
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
|+.. .......|+..++..|...+ .+.|++++..
T Consensus 83 ----y~~~-----------------------------------------~~g~~v~d~~~~~s~L~s~a-~~aGakifn~ 116 (230)
T PF01946_consen 83 ----YEEY-----------------------------------------GDGYYVADSVEFTSTLASKA-IDAGAKIFNL 116 (230)
T ss_dssp -----EE------------------------------------------SSEEEES-HHHHHHHHHHHH-HTTTEEEEET
T ss_pred ----eEEe-----------------------------------------CCeEEEEcHHHHHHHHHHHH-hcCCCEEEee
Confidence 1111 12345568888999999999 7799999999
Q ss_pred e-EEEEEEccCCcEEEEEEe-----------CCeEEEcCEEEEcCCCCchHHH
Q 014198 211 K-VERVGVGEGGRVESVMIE-----------GGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~-----------~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
+ |+++...++++|.+|.+. |--.++|+.||-|||.-+.-..
T Consensus 117 ~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 117 TSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVR 169 (230)
T ss_dssp EEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTS
T ss_pred eeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHH
Confidence 9 999987635899988874 1248999999999998775443
No 84
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.54 E-value=1.5e-12 Score=129.49 Aligned_cols=169 Identities=18% Similarity=0.222 Sum_probs=93.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH--HHh
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA--EEL 127 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~ 127 (429)
...+||+|||||++|+++|+.|++.|++|+||||.+ +..+. + ...+..+++++++++. +++
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~--r--------------a~~l~~~~~~~l~~lGl~~~l 84 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGS--R--------------AICFAKRSLEIFDRLGCGERM 84 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCC--e--------------EEEEcHHHHHHHHHcCCcHHH
Confidence 356899999999999999999999999999999987 22111 0 0112223334444321 111
Q ss_pred CCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccC-ccccceeEehHHHHHHHHHHHHhhcCcE
Q 014198 128 NGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIG-STQTTAQVHPQLFTKTLLNKAVNDYGLE 206 (429)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~l~~~l~~~~~~~~Gv~ 206 (429)
.. ..........+... ... . .+.... ..+ ..+....+....+.+.|.+.+.+..+++
T Consensus 85 ~~---~~~~~~~~~~~~~~-~~~---------~--~~~~~~-------~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~ 142 (547)
T PRK08132 85 VD---KGVSWNVGKVFLRD-EEV---------Y--RFDLLP-------EPGHRRPAFINLQQYYVEGYLVERAQALPNID 142 (547)
T ss_pred Hh---hCceeeceeEEeCC-CeE---------E--EecCCC-------CCCCCCCceEecCHHHHHHHHHHHHHhCCCcE
Confidence 00 00000000000000 000 0 000000 000 0122233455667788888883334799
Q ss_pred EEEce-EEEEEEccCCcEE-EEEEeCCe-EEEcCEEEEcCCCCchHHHhhhcccc
Q 014198 207 VVIGK-VERVGVGEGGRVE-SVMIEGGR-VVESDAVVLALGPWSGKFELLASMFR 258 (429)
Q Consensus 207 v~~~~-v~~i~~~~~g~v~-~v~~~~g~-~i~ad~vV~a~G~~s~~~~~~~~~~~ 258 (429)
+++++ |++++.+ ++.+. .+...++. ++++|.||.|+|.+|.....++....
T Consensus 143 v~~~~~v~~i~~~-~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~ 196 (547)
T PRK08132 143 LRWKNKVTGLEQH-DDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFE 196 (547)
T ss_pred EEeCCEEEEEEEc-CCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCC
Confidence 99999 9999987 44332 22223443 69999999999999986555554433
No 85
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.53 E-value=9e-14 Score=130.91 Aligned_cols=151 Identities=25% Similarity=0.265 Sum_probs=83.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc--ccccccCCeeee------ccCC----CCcch--hhhHHHHH
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC--AASGKAGGFLAL------DWCD----GGPLS--SLARASFN 118 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~--~~s~~~~g~~~~------~~~~----~~~~~--~l~~~~~~ 118 (429)
|||+|||||.+|+++|+.|++.|++|+|+||.+ ++. -.|++..--+.. .+.. ..... .+.....+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 699999999999999999999999999999997 532 112111111111 0111 11111 12222223
Q ss_pred HHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHH
Q 014198 119 LHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNK 198 (429)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~ 198 (429)
-...+..+.+.. +..+..+.++.. .-....++..|++.
T Consensus 81 d~~~ff~~~Gv~--~~~~~~gr~fP~----------------------------------------s~~a~~Vv~~L~~~ 118 (409)
T PF03486_consen 81 DLIAFFEELGVP--TKIEEDGRVFPK----------------------------------------SDKASSVVDALLEE 118 (409)
T ss_dssp HHHHHHHHTT----EEE-STTEEEET----------------------------------------T--HHHHHHHHHHH
T ss_pred HHHHHHHhcCCe--EEEcCCCEECCC----------------------------------------CCcHHHHHHHHHHH
Confidence 333455555551 111111221111 11346788899999
Q ss_pred HHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 199 AVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 199 ~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
+ ++.||++++++ |.+|+.+ ++.+..|++.++.++.||.||+|+|+.+.
T Consensus 119 l-~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 119 L-KRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp H-HHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred H-HHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecCCCCc
Confidence 9 88999999999 9999987 66667788867789999999999997663
No 86
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.53 E-value=3.5e-12 Score=122.07 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=52.6
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEE---eCCeEEEcCEEEEcCCCCchHHHhhh
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMI---EGGRVVESDAVVLALGPWSGKFELLA 254 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~---~~g~~i~ad~vV~a~G~~s~~~~~~~ 254 (429)
..++...+.+.|.+.+....|+++++++ |++++.+ ++.+ .+++ .++.++++|.||.|+|.+|.....++
T Consensus 102 ~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 102 IVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSI-TATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred eeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCce-EEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 3578889999999988333589999999 9999876 4444 2333 23457999999999999998777543
No 87
>PRK06126 hypothetical protein; Provisional
Probab=99.53 E-value=6.7e-12 Score=125.04 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=95.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHH--HHH--
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSL--AEE-- 126 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~-- 126 (429)
...+||+|||||++|+++|+.|+++|++|+|+||..... ...+ ...+..+++++++++ .++
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~-~~~r--------------a~~l~~r~~e~L~~lGl~~~l~ 69 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTA-FNPK--------------ANTTSARSMEHFRRLGIADEVR 69 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC-CCCc--------------cccCCHHHHHHHHhcChHHHHH
Confidence 346899999999999999999999999999999986211 0111 112333344544443 111
Q ss_pred -hCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCc
Q 014198 127 -LNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGL 205 (429)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv 205 (429)
.+.. ..+.... ... .......+................. . ............++...+.+.|.+.+.+..|+
T Consensus 70 ~~g~~--~~~~~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v 142 (545)
T PRK06126 70 SAGLP--VDYPTDI-AYF-TRLTGYELARFRLPSAREAITPVGG--P-DGSWPSPELPHRIPQKYLEPILLEHAAAQPGV 142 (545)
T ss_pred hhcCC--ccccCCc-eEE-ecCCCceeeeeecCCcCcccccccc--c-ccccCCCCccccCCHHHHHHHHHHHHHhCCCc
Confidence 1211 0000000 000 0000000000000000000000000 0 00000011123455667778888888334689
Q ss_pred EEEEce-EEEEEEccCCcEEEEEEe---CC--eEEEcCEEEEcCCCCchHHHhhhcc
Q 014198 206 EVVIGK-VERVGVGEGGRVESVMIE---GG--RVVESDAVVLALGPWSGKFELLASM 256 (429)
Q Consensus 206 ~v~~~~-v~~i~~~~~g~v~~v~~~---~g--~~i~ad~vV~a~G~~s~~~~~~~~~ 256 (429)
++++++ |++++.+ ++.+. +.+. ++ .++++|.||.|+|++|.....++..
T Consensus 143 ~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~ 197 (545)
T PRK06126 143 TLRYGHRLTDFEQD-ADGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGIS 197 (545)
T ss_pred eEEeccEEEEEEEC-CCeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCc
Confidence 999999 9999987 44443 3332 34 3689999999999999755555543
No 88
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.52 E-value=3.7e-13 Score=131.98 Aligned_cols=182 Identities=15% Similarity=0.211 Sum_probs=99.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
+.++||||||+|++|+++|+.++++|.+|+||||....+|+|..++|.++.................++++++.+.....
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 138 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 138 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 45789999999999999999999999999999999866666655555443211000000000000001122211100000
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCC----------CCccCccccceeEehHHHHHHHHHHHH
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARS----------PTTIGSTQTTAQVHPQLFTKTLLNKAV 200 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~~~~~~~l~~~l~~~~~ 200 (429)
.+ .++.+...+.....++|++..... .....+.+..+......++..|.+.+
T Consensus 139 ~d-----------------~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~- 200 (506)
T PRK06481 139 ND-----------------KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNV- 200 (506)
T ss_pred CC-----------------HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHH-
Confidence 00 000000000000000111000000 00000112222334456888899998
Q ss_pred hhcCcEEEEce-EEEEEEccCCcEEEEEEe--CC--eEEEcCEEEEcCCCCchHHH
Q 014198 201 NDYGLEVVIGK-VERVGVGEGGRVESVMIE--GG--RVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 201 ~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~--~g--~~i~ad~vV~a~G~~s~~~~ 251 (429)
++.|+++++++ |++|..+ +++|.+|.+. ++ ..+.||.||+|+|++..+..
T Consensus 201 ~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~ 255 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKD 255 (506)
T ss_pred HHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHH
Confidence 88899999999 9999876 7888777664 22 36899999999999887654
No 89
>PRK07538 hypothetical protein; Provisional
Probab=99.52 E-value=3.9e-12 Score=122.33 Aligned_cols=68 Identities=22% Similarity=0.167 Sum_probs=50.5
Q ss_pred eeEehHHHHHHHHHHHHhhcC-cEEEEce-EEEEEEccCCcEEEEEEeCC-----eEEEcCEEEEcCCCCchHHHhh
Q 014198 184 AQVHPQLFTKTLLNKAVNDYG-LEVVIGK-VERVGVGEGGRVESVMIEGG-----RVVESDAVVLALGPWSGKFELL 253 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~G-v~v~~~~-v~~i~~~~~g~v~~v~~~~g-----~~i~ad~vV~a~G~~s~~~~~~ 253 (429)
..++...|.+.|.+.+.+..| .++++++ |++++.++++.+ +.+.++ .+++||.||.|+|.+|.....+
T Consensus 97 ~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 97 YSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred EEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 458899999999998833346 4799999 999987745433 333322 4899999999999999766643
No 90
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.51 E-value=1e-12 Score=129.68 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=103.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------ch
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LS 110 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~ 110 (429)
..++||+|||+|++|+++|+.+++.|.+|+||||....+++|..++|.+......... +.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4578999999999999999999999999999999997767777666655432211111 22
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHH
Q 014198 111 SLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQL 190 (429)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 190 (429)
.++.++.+..+.|. +.+.. +.....|.+........ ..... ....+......
T Consensus 94 ~~~~~s~~~i~~L~-~~Gv~--f~~~~~G~~~~~~~~g~----------------------~~~r~---~~~~~d~~G~~ 145 (541)
T PRK07804 94 SLVAEGPRAVRELV-ALGAR--FDESPDGRWALTREGGH----------------------SRRRI---VHAGGDATGAE 145 (541)
T ss_pred HHHHHHHHHHHHHH-HcCCc--cccCCCCcEeeeccCCe----------------------ecCee---EecCCCCCHHH
Confidence 23333333333332 23331 11111111111000000 00000 00001113457
Q ss_pred HHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe-------CC-eEEEcCEEEEcCCCCch
Q 014198 191 FTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE-------GG-RVVESDAVVLALGPWSG 248 (429)
Q Consensus 191 l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-------~g-~~i~ad~vV~a~G~~s~ 248 (429)
+.+.|.+.+ ++.|+++++++ |+++..+++++|.++.+. ++ ..+.|+.||+|||+++.
T Consensus 146 i~~~L~~~~-~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 146 VQRALDAAV-RADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHH-HhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 888999988 78899999999 999987645688887664 22 36899999999999875
No 91
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.51 E-value=3.6e-13 Score=130.56 Aligned_cols=178 Identities=21% Similarity=0.254 Sum_probs=101.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCc
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNY 133 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (429)
||||||+|++|+++|+.++++| .+|+||||....+++|..++|.+............+....-.+++.+........+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 79 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND- 79 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC-
Confidence 8999999999999999999999 99999999997777887777766542210000000000000111111111000000
Q ss_pred CeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCC------------CCccCccccceeEehHHHHHHHHHHHHh
Q 014198 134 GYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARS------------PTTIGSTQTTAQVHPQLFTKTLLNKAVN 201 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~g~~~~~~~~~~~~l~~~l~~~~~~ 201 (429)
.++.+...+.....++|+. .... .......+..+......+++.|.+.+ +
T Consensus 80 ----------------~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~ 141 (439)
T TIGR01813 80 ----------------PELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKA-K 141 (439)
T ss_pred ----------------HHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHH-H
Confidence 0000000000000011111 0000 00000112223345678899999999 8
Q ss_pred hcCcEEEEce-EEEEEEccCCcEEEEEEeC--Ce--EEEcCEEEEcCCCCchHHH
Q 014198 202 DYGLEVVIGK-VERVGVGEGGRVESVMIEG--GR--VVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 202 ~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~--g~--~i~ad~vV~a~G~~s~~~~ 251 (429)
+.|+++++++ |+++..++++++.+|++.+ +. .+.+|.||+|+|+++.+..
T Consensus 142 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~ 196 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKE 196 (439)
T ss_pred HcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHH
Confidence 8899999999 9999986467787776642 32 4789999999999998544
No 92
>PRK07121 hypothetical protein; Validated
Probab=99.50 E-value=7.7e-13 Score=129.78 Aligned_cols=64 Identities=25% Similarity=0.374 Sum_probs=52.3
Q ss_pred ehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC-C--eEEEc-CEEEEcCCCCchHHH
Q 014198 187 HPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG-G--RVVES-DAVVLALGPWSGKFE 251 (429)
Q Consensus 187 ~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-g--~~i~a-d~vV~a~G~~s~~~~ 251 (429)
....+++.|.+.+ ++.|++|++++ |++|..++++++.+|+..+ + ..++| +.||+|||+++.+..
T Consensus 175 ~g~~~~~~L~~~~-~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~e 243 (492)
T PRK07121 175 GGAMLMDPLAKRA-AALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNRE 243 (492)
T ss_pred chHHHHHHHHHHH-HhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHH
Confidence 4567889999999 88899999999 9999886457888887653 2 35889 999999999887554
No 93
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.50 E-value=1.7e-12 Score=121.98 Aligned_cols=269 Identities=13% Similarity=0.125 Sum_probs=144.6
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
||+|||||++|+++|+.|++. |++|+|+|+.+ .++..++ ..|..+.. . .....+..+.. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw-------~~~~~~~~--~---~~~~~~~~~v~---~-- 63 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTW-------SFFDSDLS--D---AQHAWLADLVQ---T-- 63 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccc-------eecccccc--h---hhhhhhhhhhe---E--
Confidence 799999999999999999987 99999999987 3322222 11111100 0 00001111111 0
Q ss_pred CcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce
Q 014198 132 NYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK 211 (429)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~ 211 (429)
. .....+..... .... ......++...+.+.+.+.+ .. + ++.++
T Consensus 64 ----~-W~~~~v~~~~~-------------------------~~~l--~~~Y~~I~r~~f~~~l~~~l-~~-~--i~~~~ 107 (370)
T TIGR01789 64 ----D-WPGYEVRFPKY-------------------------RRKL--KTAYRSMTSTRFHEGLLQAF-PE-G--VILGR 107 (370)
T ss_pred ----e-CCCCEEECcch-------------------------hhhc--CCCceEEEHHHHHHHHHHhh-cc-c--EEecC
Confidence 0 00011100000 0000 12447888889999888776 43 3 67787
Q ss_pred -EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEecCCCCCCCCCceeEeeeccCC
Q 014198 212 -VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIILEPKEADAITPHALFLSYYPAQ 290 (429)
Q Consensus 212 -v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (429)
|+++.. ++ |++.+|.+++|+.||.|+|..+..... ...+.-.|+.+.+..+. . ....+++++...+
T Consensus 108 ~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~~~~~----~~~Q~f~G~~~r~~~p~--~-~~~~~lMD~~~~q 174 (370)
T TIGR01789 108 KAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPSAHLK----GGFQVFLGREMRLQEPH--G-LENPIIMDATVDQ 174 (370)
T ss_pred EEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCCcccc----ceeeEEEEEEEEEcCCC--C-CCccEEEeeeccC
Confidence 998842 32 344678899999999999988653332 12233345556655432 2 2344556665432
Q ss_pred CCCCCCCCCceEecCCCcEEEeccCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHhccccCcccccceeeeeecccCCCC-
Q 014198 291 GEGGKPMDPEVYPRPTGEVYLCGMSSEQEVPDDPETVSGDPASIQ-VLKRVARTVSSHLGEEAQVKAEQACFLPCTDDG- 368 (429)
Q Consensus 291 ~~~~~~~~~~~~~~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~p~l~~~~~~~~~~~g~r~~t~d~- 368 (429)
.. .+...|+.|..++++++ ..|... .....+.+.++ .+.+.+.+. .+.. ..+++...|..|++.++
T Consensus 175 ~~--g~~F~Y~lP~~~~~~lv-E~T~~s------~~~~l~~~~l~~~l~~~~~~~--g~~~-~~i~~~e~g~iPm~~~~~ 242 (370)
T TIGR01789 175 LA--GYRFVYVLPLGSHDLLI-EDTYYA------DDPLLDRNALSQRIDQYARAN--GWQN-GTPVRHEQGVLPVLLGGD 242 (370)
T ss_pred CC--CceEEEECcCCCCeEEE-EEEecc------CCCCCCHHHHHHHHHHHHHHh--CCCc-eEEEEeeeeEEeeecCCC
Confidence 21 13344556777777765 333221 11223444443 344444433 3333 45666666888875432
Q ss_pred ----------CceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 369 ----------VPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 369 ----------~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
..++|.. - ...-...|.|+..+...++.|++.+
T Consensus 243 ~~~~~~~~~~v~~iG~A---A--g~~~P~tGyg~~~a~~~a~~la~~~ 285 (370)
T TIGR01789 243 FSAYQDEVRIVAIAGLR---A--GLTHPTTGYSLPVAVENADALAAQP 285 (370)
T ss_pred cccccccCCceeeeecc---c--ccccccccccHHHHHHHHHHHHhcc
Confidence 1223422 1 2222334557888888888888877
No 94
>PTZ00367 squalene epoxidase; Provisional
Probab=99.49 E-value=4.5e-12 Score=124.58 Aligned_cols=164 Identities=19% Similarity=0.194 Sum_probs=91.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
+..+||+|||||++|+++|+.|+++|++|+|+|+.....- .+..| ..+...+.++++++ +..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~--~r~~G------------~~L~p~g~~~L~~L----GL~ 92 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP--DRIVG------------ELLQPGGVNALKEL----GME 92 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc--chhhh------------hhcCHHHHHHHHHC----CCh
Confidence 3468999999999999999999999999999999752100 00000 01222233333332 221
Q ss_pred C---CcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHH--HhhcCc
Q 014198 131 D---NYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKA--VNDYGL 205 (429)
Q Consensus 131 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~--~~~~Gv 205 (429)
. ..... ...+.+...+... . ...+ ........++...+.+.|.+.+ ....++
T Consensus 93 d~l~~i~~~-~~~~~v~~~~G~~---------~--~i~~-----------~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V 149 (567)
T PTZ00367 93 ECAEGIGMP-CFGYVVFDHKGKQ---------V--KLPY-----------GAGASGVSFHFGDFVQNLRSHVFHNCQDNV 149 (567)
T ss_pred hhHhhcCcc-eeeeEEEECCCCE---------E--EecC-----------CCCCceeEeEHHHHHHHHHHHHHhhcCCCc
Confidence 0 00111 1111111110000 0 0000 0001223456677878877766 234689
Q ss_pred EEEEceEEEEEEccCC---cEEEEEEe--C-----------------------CeEEEcCEEEEcCCCCchHHHhhhc
Q 014198 206 EVVIGKVERVGVGEGG---RVESVMIE--G-----------------------GRVVESDAVVLALGPWSGKFELLAS 255 (429)
Q Consensus 206 ~v~~~~v~~i~~~~~g---~v~~v~~~--~-----------------------g~~i~ad~vV~a~G~~s~~~~~~~~ 255 (429)
+++..+|+++..++.+ ++.+|+.. + +.+++||.||.|+|.+|.....++.
T Consensus 150 ~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~ 227 (567)
T PTZ00367 150 TMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQH 227 (567)
T ss_pred EEEEeEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccC
Confidence 9976558887654221 34555443 2 4579999999999999988775543
No 95
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.49 E-value=2.1e-11 Score=116.07 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe-CCe--EEEcCEEEEcCCCCchHHHhh
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE-GGR--VVESDAVVLALGPWSGKFELL 253 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-~g~--~i~ad~vV~a~G~~s~~~~~~ 253 (429)
...+.+.|.+.+ .+.|+.+++++ ++.+...++.. ..|++. +|. +++||.||.|+|.+|.....+
T Consensus 102 ~~~l~~~L~~~~-~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l 169 (390)
T TIGR02360 102 QTEVTRDLMEAR-EAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGFHGVSRASI 169 (390)
T ss_pred HHHHHHHHHHHH-HhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCCchhhHHhc
Confidence 456778888888 77799999998 88876531222 245554 664 689999999999999866643
No 96
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.48 E-value=3.7e-13 Score=131.41 Aligned_cols=187 Identities=18% Similarity=0.140 Sum_probs=99.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCC--ccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSV--ACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELN 128 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~--~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (429)
..++||||||+|++|+++|+.|+++|.+|+||||... .+|+|..++| +..................+++.++.....
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 3468999999999999999999999999999999973 4566777777 332111110000000001123333332221
Q ss_pred CCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEE
Q 014198 129 GPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVV 208 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~ 208 (429)
...+..+ .. ..+..... ..++..+ .+..+.................. -....++..|.+.+ ++.|++++
T Consensus 81 ~~~~~~~--~~-~~~~~s~~---~~~wl~~-~Gv~~~~~~~~~~~~~~~~~~~~---g~g~~l~~~l~~~~-~~~gv~i~ 149 (466)
T PRK08274 81 GRTDEAL--AR-LLIRESSD---CRDWMRK-HGVRFQPPLSGALHVARTNAFFW---GGGKALVNALYRSA-ERLGVEIR 149 (466)
T ss_pred CCCCHHH--HH-HHHHcCHH---HHHHHHh-CCceEeecCCCccccCCCCeeec---CCHHHHHHHHHHHH-HHCCCEEE
Confidence 1000000 00 00000000 0000000 00000000000000000000000 01467888999998 88899999
Q ss_pred Ece-EEEEEEccCCcEEEEEEe--C--CeEEEcCEEEEcCCCCchHH
Q 014198 209 IGK-VERVGVGEGGRVESVMIE--G--GRVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 209 ~~~-v~~i~~~~~g~v~~v~~~--~--g~~i~ad~vV~a~G~~s~~~ 250 (429)
+++ |++|..+ +++|.+|.+. + ...++|+.||+|+|++..+.
T Consensus 150 ~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~ 195 (466)
T PRK08274 150 YDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNR 195 (466)
T ss_pred cCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCH
Confidence 999 9999987 7888888764 2 24689999999999877654
No 97
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=3.3e-12 Score=126.69 Aligned_cols=162 Identities=19% Similarity=0.120 Sum_probs=99.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccC---CCCc--------------------
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWC---DGGP-------------------- 108 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~---~~~~-------------------- 108 (429)
.++||||||+|.+|+++|+.+++.|.+|+||||....++.|..++|.+..... ....
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 46899999999999999999999999999999998655565555554442111 0111
Q ss_pred -chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-cccc---
Q 014198 109 -LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTT--- 183 (429)
Q Consensus 109 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~--- 183 (429)
+..++.++.+.++.|. +++..+ .....+.+... ...+. .+..
T Consensus 84 ~v~~~~~~s~~~i~~L~-~~Gv~f--~~~~~g~~~~~------------------------------~~gg~~~~r~~~~ 130 (566)
T PRK06452 84 AAELLSNKSGEIVMLLE-RWGALF--NRQPDGRVAVR------------------------------YFGGQTYPRTRFV 130 (566)
T ss_pred HHHHHHHHHHHHHHHHH-HCCCcc--ccCCCCcEecc------------------------------CCcCccCCeeEec
Confidence 1222333333333222 233311 10001100000 00000 0000
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC---C--eEEEcCEEEEcCCCCch
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG---G--RVVESDAVVLALGPWSG 248 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~---g--~~i~ad~vV~a~G~~s~ 248 (429)
+.-....+++.|.+.+ .+.|+++++++ ++++..+ +|+|.+|...+ + ..+.|+.||+|||++..
T Consensus 131 ~~~~G~~i~~~L~~~~-~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 199 (566)
T PRK06452 131 GDKTGMALLHTLFERT-SGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGM 199 (566)
T ss_pred CCCCHHHHHHHHHHHH-HhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCcccc
Confidence 0012356888898888 67799999999 9999987 88999987653 2 36789999999998773
No 98
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.45 E-value=5e-12 Score=123.66 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=99.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------chhh
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LSSL 112 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~~l 112 (429)
++||+|||+|++|+++|+.+++.|. |+||||....+++|..++|.+......... +..+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999998 999999987667776666655543321111 1112
Q ss_pred hHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-cccc---eeEeh
Q 014198 113 ARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTT---AQVHP 188 (429)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~---~~~~~ 188 (429)
+.++.+..+.+. +.+.. +.....|.+.. ....+. .+.. +....
T Consensus 81 ~~~~~~~i~~L~-~~Gv~--f~~~~~g~~~~------------------------------~~~gg~~~~r~~~~~~~~G 127 (488)
T TIGR00551 81 VSDARSAVQWLV-DQGVL--FDRHEQGSYAL------------------------------TREGGHSYRRILHAADATG 127 (488)
T ss_pred HHhHHHHHHHHH-HcCCc--ceeCCCCCccc------------------------------cCCCCcCCCeEEEeCCCCH
Confidence 222222222221 12221 00000000000 000000 0000 11234
Q ss_pred HHHHHHHHHHHHhh-cCcEEEEce-EEEEEEccCCcEEEEEEeC-C--eEEEcCEEEEcCCCCchH
Q 014198 189 QLFTKTLLNKAVND-YGLEVVIGK-VERVGVGEGGRVESVMIEG-G--RVVESDAVVLALGPWSGK 249 (429)
Q Consensus 189 ~~l~~~l~~~~~~~-~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-g--~~i~ad~vV~a~G~~s~~ 249 (429)
..+.+.|.+.+ ++ .|+++++++ |+++..+ ++++.++.+.+ + ..+.|+.||+|||+++..
T Consensus 128 ~~l~~~L~~~~-~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 128 REVITTLVKKA-LNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHH-HhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 67888999998 65 699999999 9999876 67777776654 2 368999999999999864
No 99
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.45 E-value=3.5e-12 Score=122.96 Aligned_cols=166 Identities=24% Similarity=0.297 Sum_probs=95.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCC-------Cc-------------------
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDG-------GP------------------- 108 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~-------~~------------------- 108 (429)
||||||+|++|+++|+.++++|.+|+||||....++++..++|.+....... ..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999965667777777766532110 10
Q ss_pred -chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCC---cc--Ccccc
Q 014198 109 -LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPT---TI--GSTQT 182 (429)
Q Consensus 109 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--g~~~~ 182 (429)
...+...+.+..+.+. +.+.. +.....+.+..... ...... .. ...+.
T Consensus 81 ~~~~~~~~~~~~~~~l~-~~g~~--~~~~~~g~~~~~~~-----------------------g~~~~~~~~~~~~~~~~~ 134 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLE-ELGVP--FRRDEDGPFAPTPF-----------------------GGHSPRWRSPPGNPDPPF 134 (417)
T ss_dssp HHHHHHHHHHHHHHHHH-HTT----B-BGTTSSBCEEEE-----------------------TTESSTEEEEESSTTSSS
T ss_pred hhhhhhhcccceehhhh-hhccc--cccccccccccccc-----------------------CCccccceeeeccccccc
Confidence 0111111112221111 11210 00000000000000 000000 00 00001
Q ss_pred ceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCch
Q 014198 183 TAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 183 ~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~ 248 (429)
........++..|.+.+ ++.|++|++++ ++++..+ +++|.+|... +++ .|+|+.||+|||.+..
T Consensus 135 ~~~~~g~~~~~~l~~~~-~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 135 GGLGGGKALIEALAKAA-EEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HCCCHHHHHHHHHHHHH-HHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cccccHHHHHHHHHHHH-hhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 22234577889999999 88899999999 9999998 8899999887 343 6789999999999997
No 100
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.45 E-value=9.4e-12 Score=112.63 Aligned_cols=298 Identities=15% Similarity=0.114 Sum_probs=140.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHH--HHHHHhCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHR--SLAEELNGP 130 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ 130 (429)
+.+|+|||||++|+++|+.|.++|++|+|+|+.....+. +. -++... -..++++.+. +...+.+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~-g~---si~L~~--------ng~~aLkai~~~e~i~~~gip 69 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE-GT---SINLAL--------NGWRALKAIGLKEQIREQGIP 69 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC-Cc---ceeehh--------hHHHHHHHcccHHHHHHhcCc
Confidence 458999999999999999999999999999997633222 11 111100 0111222111 222222221
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
. . +.. +.+..... ....+.+.+. ....-.++.+.+.+.++..++....+++..+
T Consensus 70 ~--~----~~v-~~~~~sg~---------~~~~~~~~~~----------~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~ 123 (420)
T KOG2614|consen 70 L--G----GRV-LIHGDSGK---------EVSRILYGEP----------DEYILRINRRNLLQELLAEALPTGTIKFHSN 123 (420)
T ss_pred c--c----cee-eeecCCCC---------eeEecccCCc----------hHHHHHHHHHHHHHHHHHhhcCCCeeecccc
Confidence 0 0 000 00000000 0000000000 0111334556666666666635555666652
Q ss_pred e-----EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHhhhcccccccceeeEEEe-cCCCCCCCCCceeEe
Q 014198 211 K-----VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFELLASMFRVSGLKAHSIIL-EPKEADAITPHALFL 284 (429)
Q Consensus 211 ~-----v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 284 (429)
. ...++.-... ..|++.+|.++++|.+|.|+|++|.....++...|-+.....+..+ .-+...+. ..-.+.
T Consensus 124 ~~~~~~~~~~~~~~~~--~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~-~~~vf~ 200 (420)
T KOG2614|consen 124 LSCTSKDVEIETLGKK--LVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPF-GKKVFA 200 (420)
T ss_pred cccccccceeeecccc--cceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCc-ccceec
Confidence 2 3333332122 2368888999999999999999999888555443433332222111 11110011 111111
Q ss_pred eeccCCCCCCCCCCCceEecCCCcEEEeccCCC-------CCCCCCCCCCCCCHHHHHHHHHHHHHhccccCccccccee
Q 014198 285 SYYPAQGEGGKPMDPEVYPRPTGEVYLCGMSSE-------QEVPDDPETVSGDPASIQVLKRVARTVSSHLGEEAQVKAE 357 (429)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~g~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~~~~~~~ 357 (429)
. .....+..|++....++.--.+. ...++...-.....+.++.+.+.+.+++.-+.. ..+...
T Consensus 201 ~---------~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~-e~i~~t 270 (420)
T KOG2614|consen 201 I---------YGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGE-ESIVRT 270 (420)
T ss_pred c---------cCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcCh-HHhhhc
Confidence 1 12234444555433221111100 000000001112233445555555555543333 222211
Q ss_pred -------eee-ecccCCCCCceeccCCCCCcEEEEecCCCccchhhHHHHHHHHHHH
Q 014198 358 -------QAC-FLPCTDDGVPVIGELPGIKGCYVGTGHNCWGILNGPATGAALAELV 406 (429)
Q Consensus 358 -------~~g-~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i 406 (429)
|.. +...+++...++|. -.+..+.+.|+|+..|.--+..+++.+
T Consensus 271 ~l~~r~p~~~i~~~~s~~~vvL~GD-----AaHaM~Pf~GQG~n~a~ED~~VLa~~L 322 (420)
T KOG2614|consen 271 PLADRPPWPLISVKCSPGNVVLLGD-----AAHAMTPFLGQGGNCAFEDCVVLAECL 322 (420)
T ss_pred hhhhcCCcCeeeeccCCCeEEEecc-----cccccCCcccccccchHHHHHHHHHHH
Confidence 111 12235556667774 346677888888888887777777776
No 101
>PLN02815 L-aspartate oxidase
Probab=99.44 E-value=5.7e-12 Score=124.84 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=99.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------ch
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LS 110 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~ 110 (429)
..++||||||+|++|+++|+.+++.| +|+||||....+++|..++|.+......... +.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 45789999999999999999999999 9999999997777776666655432211111 22
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHH
Q 014198 111 SLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQL 190 (429)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 190 (429)
.++.++.+..+.|. +.+.. +.....+.+..... ........ ...+......
T Consensus 106 ~~~~~s~e~i~~L~-~~Gv~--F~~~~~g~~~~~~~----------------------gg~s~~R~----~~~~d~tG~~ 156 (594)
T PLN02815 106 VVCTEGPERVKELI-AMGAS--FDHGEDGNLHLARE----------------------GGHSHHRI----VHAADMTGRE 156 (594)
T ss_pred HHHHHHHHHHHHHH-HhCCe--eeecCCCCccccCC----------------------CCCccCce----eecCCCCHHH
Confidence 33333434333332 23331 10000000000000 00000000 0001113456
Q ss_pred HHHHHHHHHHhhcCcEEEEce-EEEEEEccCC---cEEEEEEe---CC--eEEEcCEEEEcCCCCch
Q 014198 191 FTKTLLNKAVNDYGLEVVIGK-VERVGVGEGG---RVESVMIE---GG--RVVESDAVVLALGPWSG 248 (429)
Q Consensus 191 l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g---~v~~v~~~---~g--~~i~ad~vV~a~G~~s~ 248 (429)
++..|.+.+++..|+++++++ +++|..++++ +|.++... ++ ..+.|+.||+|||++..
T Consensus 157 i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 157 IERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 888898888334599999999 9999875344 27787653 34 35789999999998875
No 102
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.44 E-value=4.6e-12 Score=126.64 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=104.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCC--CCc--------------------
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD--GGP-------------------- 108 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~--~~~-------------------- 108 (429)
..++||||||+|.+|+++|+.+++.|.+|+||||....+++|..+.|.+...... ...
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 3468999999999999999999999999999999987666666666655542211 111
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEeh
Q 014198 109 LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHP 188 (429)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 188 (429)
+..++.++.+.++.|. +.+.. +.....|.+..... .+....+...... ... .....-..
T Consensus 107 v~~l~~~s~~~i~~L~-~~Gv~--f~~~~~g~~~~~~~-------------gg~s~~~~~~~~~-~r~----~~~~d~tG 165 (617)
T PTZ00139 107 IQYMCREAPQAVLELE-SYGLP--FSRTKDGKIYQRAF-------------GGQSLKFGKGGQA-YRC----AAAADRTG 165 (617)
T ss_pred HHHHHHHHHHHHHHHH-hcCCc--eEeCCCCcEeeccc-------------CcccccccCCCcc-cee----eecCCCcH
Confidence 2223333444444332 23331 11101111100000 0000000000000 000 00000123
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CC--eEEEcCEEEEcCCCCchH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GG--RVVESDAVVLALGPWSGK 249 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g--~~i~ad~vV~a~G~~s~~ 249 (429)
..+++.|.+.+ ++.|++++.++ ++++..+++++|.+|... ++ ..+.|+.||+|||++...
T Consensus 166 ~~i~~~L~~~a-~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 166 HAMLHTLYGQS-LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred HHHHHHHHHHH-HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 57888999998 77899999999 999987437888888652 34 367899999999998754
No 103
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.43 E-value=2.6e-12 Score=124.82 Aligned_cols=152 Identities=23% Similarity=0.246 Sum_probs=93.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC--CccccccccCCeeeeccCCCCcchhhhHHHH---HHHHHHHHH
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAGGFLALDWCDGGPLSSLARASF---NLHRSLAEE 126 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~--~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~ 126 (429)
..+||+|||||.+|+++|+.+++.|.+|+|||+.. +|.-+...+-|.+.. ..+..+-- ..+....+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~ak--------g~lvrEidalGg~~g~~~d~ 74 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK--------GHLVREIDALGGEMGKAIDK 74 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchh--------hHHHHHHHhcCCHHHHHHhh
Confidence 46999999999999999999999999999999973 332111111111110 01111000 011111111
Q ss_pred hCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcE
Q 014198 127 LNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLE 206 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~ 206 (429)
.+. .+..++... .. ......+++|+..+.+.+.+.+....|++
T Consensus 75 ~gi---------------------------------q~r~ln~sk---Gp-AV~s~RaQiDr~ly~kaL~e~L~~~~nV~ 117 (618)
T PRK05192 75 TGI---------------------------------QFRMLNTSK---GP-AVRALRAQADRKLYRAAMREILENQPNLD 117 (618)
T ss_pred ccC---------------------------------ceeecccCC---CC-ceeCcHHhcCHHHHHHHHHHHHHcCCCcE
Confidence 111 000111000 00 00112247889999999999883345899
Q ss_pred EEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchH
Q 014198 207 VVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGK 249 (429)
Q Consensus 207 v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~ 249 (429)
++..+|+++..+ ++++.+|.+.+|..+.|+.||+|||.|++.
T Consensus 118 I~q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 118 LFQGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred EEEeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence 875559888877 778889999999999999999999987743
No 104
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.43 E-value=5.8e-12 Score=125.88 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=102.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCC--CCc--------------------c
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD--GGP--------------------L 109 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~--~~~--------------------~ 109 (429)
.++||||||+|++|+++|+.+++.|.+|+||||..+.+++|..+.|.+...... ... +
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 468999999999999999999999999999999987666766666655542221 111 1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehH
Q 014198 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQ 189 (429)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 189 (429)
..++.++.+.++.+. +.+.. +.-...|.+...... .....+. ....... ....+.-...
T Consensus 129 ~~l~~~s~~~i~~L~-~~Gv~--F~~~~~g~~~~~~~g-------------g~s~~~~-~~g~~~r----~~~~~d~tG~ 187 (635)
T PLN00128 129 QYMCREAPKAVIELE-NYGLP--FSRTEDGKIYQRAFG-------------GQSLDFG-KGGQAYR----CACAADRTGH 187 (635)
T ss_pred HHHHHhHHHHHHHHH-hCCCc--cccCCCCceeecccc-------------ccccccC-CCcceee----eeccCCCCHH
Confidence 222333333333322 23331 110001110000000 0000000 0000000 0000111235
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CC--eEEEcCEEEEcCCCCchHH
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GG--RVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g--~~i~ad~vV~a~G~~s~~~ 250 (429)
.+++.|.+.+ .+.|++++.++ ++++..+++++|.++... +| ..+.|+.||+|||++....
T Consensus 188 ~i~~~L~~~a-~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~ 253 (635)
T PLN00128 188 AMLHTLYGQA-MKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAY 253 (635)
T ss_pred HHHHHHHHHH-HhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcccc
Confidence 6888999988 77899999999 999887546788888763 34 3678999999999987643
No 105
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.42 E-value=9.3e-12 Score=124.23 Aligned_cols=177 Identities=18% Similarity=0.203 Sum_probs=102.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCC--CCc--------------------c
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD--GGP--------------------L 109 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~--~~~--------------------~ 109 (429)
..+||||||+|++|+++|+.+++.|.+|+||||.....++|..+.|.+...... ... +
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 90 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAI 90 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHH
Confidence 468999999999999999999999999999999986666665555555432211 111 1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehH
Q 014198 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQ 189 (429)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 189 (429)
..++.++.+..+.+. +.+.. +.....|.+....... ....+-..... .... ....-...
T Consensus 91 ~~l~~~s~~~i~~L~-~~Gv~--f~~~~~G~~~~~~~gg-------------~~~~~~~~~~~-~R~~----~~~d~tG~ 149 (598)
T PRK09078 91 EYMCREAPAAVYELE-HYGVP--FSRTEEGKIYQRPFGG-------------MTTNYGKGPPA-QRTC----AAADRTGH 149 (598)
T ss_pred HHHHHHHHHHHHHHH-HcCCc--ceecCCCceeecccCc-------------eecccCCCCcc-ceeE----ecCCCCHH
Confidence 223333333333322 23331 1111111110000000 00000000000 0000 00001234
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchHH
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGKF 250 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~~ 250 (429)
.++..|.+.+ ++.|+++++++ ++++..+++++|.+|... ++. .+.|+.||+|||++....
T Consensus 150 ~i~~~L~~~~-~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 215 (598)
T PRK09078 150 AILHTLYQQS-LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAY 215 (598)
T ss_pred HHHHHHHHHH-hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcccc
Confidence 6888999988 77899999999 999987634788888752 443 688999999999987643
No 106
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.42 E-value=4.6e-12 Score=124.21 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=98.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------chhh
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LSSL 112 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~~l 112 (429)
++||||||+|.+|+++|+.+++ |.+|+||||....+++|..++|.+......... +..+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6799999999999999999976 999999999997667776566655443221111 2222
Q ss_pred hHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHH
Q 014198 113 ARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFT 192 (429)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 192 (429)
+.++.+.+..+.+ .+.. +.....|.+....... ... ... ....+......++
T Consensus 82 ~~~s~~~i~~L~~-~Gv~--f~~~~~g~~~~~~~gg---------------------~~~-~r~---~~~~gd~~g~~i~ 133 (510)
T PRK08071 82 VEEGPKEIQELIE-NGMP--FDGDETGPLHLGKEGA---------------------HRK-RRI---LHAGGDATGKNLL 133 (510)
T ss_pred HHHHHHHHHHHHH-cCCc--cccCCCCceeeccCcC---------------------ccC-CeE---EecCCCCcHHHHH
Confidence 3333333333322 3331 1100011100000000 000 000 0001122356788
Q ss_pred HHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC--C--eEEEcCEEEEcCCCCch
Q 014198 193 KTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG--G--RVVESDAVVLALGPWSG 248 (429)
Q Consensus 193 ~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~--g--~~i~ad~vV~a~G~~s~ 248 (429)
+.|.+.+ . .|+++++++ |+++..+ ++++.++.+.+ + ..+.|+.||+|||+++.
T Consensus 134 ~~L~~~~-~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 134 EHLLQEL-V-PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHH-h-cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 8888887 5 599999999 9999876 78888887653 2 26889999999999875
No 107
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=8.1e-12 Score=125.26 Aligned_cols=172 Identities=22% Similarity=0.153 Sum_probs=95.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccC---CCCc------------------
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWC---DGGP------------------ 108 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~---~~~~------------------ 108 (429)
..++||+|||+|.+|+++|+.+++.|.+|+||||.. ++.++|..++|.+..... ....
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~ 112 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRARE 112 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCH
Confidence 346899999999999999999999999999999866 555556555444332110 0010
Q ss_pred --chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeE
Q 014198 109 --LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQV 186 (429)
Q Consensus 109 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 186 (429)
+..++..+.+..+.+. +.+..+ .....+.+...... .... ....-.....+..
T Consensus 113 ~lv~~l~~~s~~~i~wL~-~~GV~f--~~~~~g~~~~~~~g---------------------ghs~-~R~~~~~~~tG~~ 167 (640)
T PRK07573 113 ANVYRLAEVSVNIIDQCV-AQGVPF--AREYGGLLANRSFG---------------------GAQV-SRTFYARGQTGQQ 167 (640)
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCcc--ccCCCCceeccccC---------------------Cccc-ceeEeCCCCCchh
Confidence 1223333333333222 233211 00000000000000 0000 0000000000111
Q ss_pred ehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchH
Q 014198 187 HPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 187 ~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~ 249 (429)
-...+.+.|.+.+ ++.|++|++++ ++++..+ +++|.+|.+. ++. .+.|+.||+|||+++..
T Consensus 168 i~~~l~~~L~~~~-~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 168 LLLGAYQALSRQI-AAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHHHHH-HhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 1122335666677 77899999999 9999887 7888888765 342 68999999999998764
No 108
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=6.4e-12 Score=125.01 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=102.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccC--CCCc--------------------c
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWC--DGGP--------------------L 109 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~--~~~~--------------------~ 109 (429)
.++||||||+|++|+++|+.+++.|.+|+||||....+++|..++|.+..... .... +
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 46899999999999999999999999999999998655566555555433211 1111 2
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehH
Q 014198 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQ 189 (429)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 189 (429)
..++.++.+.++.|. +.+.. +.-...|.+...... .....+ ......+. ...+.-...
T Consensus 86 ~~~~~~s~~~i~~L~-~~Gv~--f~~~~~g~~~~~~~g-------------g~~~~~--~~~~~~r~----~~~~~~~G~ 143 (588)
T PRK08958 86 EYMCKTGPEAILELE-HMGLP--FSRLDDGRIYQRPFG-------------GQSKNF--GGEQAART----AAAADRTGH 143 (588)
T ss_pred HHHHHHHHHHHHHHH-HcCCC--cccCCCCceeecccc-------------cccccc--ccccccee----EecCCCCHH
Confidence 233344444444332 23331 111111111000000 000000 00000000 000001235
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CC--eEEEcCEEEEcCCCCchH
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GG--RVVESDAVVLALGPWSGK 249 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g--~~i~ad~vV~a~G~~s~~ 249 (429)
.++..|.+.+ .+.|+++++++ ++++..+++|+|.+|... ++ ..+.|+.||+|||+++..
T Consensus 144 ~i~~~L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 144 ALLHTLYQQN-LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHh-hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 6888999888 77899999999 999987547888888752 34 357899999999998864
No 109
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.41 E-value=6.6e-12 Score=115.73 Aligned_cols=221 Identities=16% Similarity=0.165 Sum_probs=146.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC-Cccccc--cccCCeeeeccCCCC---c-------------ch
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS-VACAAS--GKAGGFLALDWCDGG---P-------------LS 110 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~-~~~~~s--~~~~g~~~~~~~~~~---~-------------~~ 110 (429)
..+||++|||||.|.++++.|++. .++|.|+||-+ ++..+| +++.|-.|+.++... . +.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 368999999999999999999985 58999999998 555444 777888877654311 0 11
Q ss_pred hhhHHHHHHHHHHHHHhCCCC-CcCeeeeeeeEEeecccccC-CCCCccccC----CCCCCCCCCCC-------------
Q 014198 111 SLARASFNLHRSLAEELNGPD-NYGYRALTTLSLTVTESQQS-GSKPSNKAN----SLIPSWVDGPA------------- 171 (429)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~------------- 171 (429)
+-..-+.++|..+.++-.... .-.+..+..+.+...+.+.+ ++++++.+. ...+++.+...
T Consensus 82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR 161 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR 161 (488)
T ss_pred HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence 122334466666655433221 23455666777777666655 333333321 22333332110
Q ss_pred -CC-CCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe-----CCeEEEcCEEEEcC
Q 014198 172 -RS-PTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE-----GGRVVESDAVVLAL 243 (429)
Q Consensus 172 -~~-~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-----~g~~i~ad~vV~a~ 243 (429)
.. +....+...+..+|=..+.+.|.+.+.+..|+++++++ |++|.+.+++.+ .|.+. +..+++|++|++++
T Consensus 162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGA 240 (488)
T PF06039_consen 162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGA 240 (488)
T ss_pred CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECC
Confidence 00 11112345667789999999999999444599999999 999999866653 45543 23689999999999
Q ss_pred CCCchHHH-hhh----cccccccceeeEEEecCCC
Q 014198 244 GPWSGKFE-LLA----SMFRVSGLKAHSIILEPKE 273 (429)
Q Consensus 244 G~~s~~~~-~~~----~~~~~~~~~~~~~~~~~~~ 273 (429)
|+++-.++ ..| ......|+.|+.+..+.++
T Consensus 241 GG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~ 275 (488)
T PF06039_consen 241 GGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPE 275 (488)
T ss_pred chHhHHHHHHcCChhhcccCCCcccceEEecCCHH
Confidence 99999998 323 3555678888888877553
No 110
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.41 E-value=1.2e-12 Score=124.24 Aligned_cols=128 Identities=26% Similarity=0.407 Sum_probs=93.7
Q ss_pred ccccCCCCCCCccCcceEE---Eeeccc-cccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRK-LSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAA 78 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~ 78 (429)
.+||||||+|..||+..+. +++..+ +... ..+.+++|||||++|++.|..+++.|.+
T Consensus 138 ~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~-------------------~lP~~lvIiGgG~IGlE~a~~~~~LG~~ 198 (454)
T COG1249 138 NIIIATGSRPRIPPGPGIDGARILDSSDALFLL-------------------ELPKSLVIVGGGYIGLEFASVFAALGSK 198 (454)
T ss_pred EEEEcCCCCCcCCCCCCCCCCeEEechhhcccc-------------------cCCCEEEEECCCHHHHHHHHHHHHcCCc
Confidence 4799999999998744332 333332 1111 2356899999999999999999999999
Q ss_pred EEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 79 VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 79 V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
|+|||+.+ .+++.+.+
T Consensus 199 VTiie~~~-------------------------------~iLp~~D~--------------------------------- 214 (454)
T COG1249 199 VTVVERGD-------------------------------RILPGEDP--------------------------------- 214 (454)
T ss_pred EEEEecCC-------------------------------CCCCcCCH---------------------------------
Confidence 99999998 22222222
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCe--EEE
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGR--VVE 235 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~--~i~ 235 (429)
++.+.+.+.+ ++.|+++++++ +++++.. ++. ..+.++++. +++
T Consensus 215 -------------------------------ei~~~~~~~l-~~~gv~i~~~~~v~~~~~~-~~~-v~v~~~~g~~~~~~ 260 (454)
T COG1249 215 -------------------------------EISKELTKQL-EKGGVKILLNTKVTAVEKK-DDG-VLVTLEDGEGGTIE 260 (454)
T ss_pred -------------------------------HHHHHHHHHH-HhCCeEEEccceEEEEEec-CCe-EEEEEecCCCCEEE
Confidence 2333677777 66789999999 9999887 443 456776665 789
Q ss_pred cCEEEEcCCCCc
Q 014198 236 SDAVVLALGPWS 247 (429)
Q Consensus 236 ad~vV~a~G~~s 247 (429)
+|.|++|+|-..
T Consensus 261 ad~vLvAiGR~P 272 (454)
T COG1249 261 ADAVLVAIGRKP 272 (454)
T ss_pred eeEEEEccCCcc
Confidence 999999999543
No 111
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.41 E-value=8.1e-12 Score=124.20 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=44.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeee
Q 014198 50 RHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLA 100 (429)
Q Consensus 50 ~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~ 100 (429)
+..++||||||+|++|+++|+.++++|.+|+||||....+++|..++|.++
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~ 58 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIW 58 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCcc
Confidence 356799999999999999999999999999999999977777777766554
No 112
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=1.1e-11 Score=124.38 Aligned_cols=163 Identities=21% Similarity=0.171 Sum_probs=98.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCC---CCc--------------------
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD---GGP-------------------- 108 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~---~~~-------------------- 108 (429)
.++||||||+|++|+++|+.+++.|.+|+||||...++++|..++|.+...... ...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~ 86 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRM 86 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHH
Confidence 468999999999999999999999999999999987767776666655543321 111
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-ccc---ce
Q 014198 109 LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQT---TA 184 (429)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~---~~ 184 (429)
+..++.++.+.+.. ..+.+.. +.....|.+.... ..+. .+. .+
T Consensus 87 v~~~~~~s~~~i~~-L~~~Gv~--f~~~~~g~~~~~~------------------------------~gg~~~~r~~~~~ 133 (626)
T PRK07803 87 AELHAKEAPDRVWE-LETYGAL--FDRTKDGRISQRN------------------------------FGGHTYPRLAHVG 133 (626)
T ss_pred HHHHHHHhHHHHHH-HHHCCCc--eEecCCCceeeee------------------------------cCCcccCeEEecC
Confidence 11122223333321 2223331 1000011110000 0000 000 00
Q ss_pred eEehHHHHHHHHHHHHhhc--------C-----cEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCC
Q 014198 185 QVHPQLFTKTLLNKAVNDY--------G-----LEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGP 245 (429)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~--------G-----v~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~ 245 (429)
.-....++..|.+.+ .+. | +++++++ |+++..+ ++++.++... ++. .+.|+.||+|||+
T Consensus 134 ~~tG~~i~~~L~~~~-~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 134 DRTGLELIRTLQQKI-VSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred CCcHHHHHHHHHHHH-HhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 112356788888877 555 6 9999999 9999876 7888777542 343 6899999999998
Q ss_pred CchH
Q 014198 246 WSGK 249 (429)
Q Consensus 246 ~s~~ 249 (429)
+...
T Consensus 212 ~~~~ 215 (626)
T PRK07803 212 IGKS 215 (626)
T ss_pred ccCC
Confidence 6644
No 113
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=1.5e-11 Score=122.47 Aligned_cols=166 Identities=18% Similarity=0.171 Sum_probs=99.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccC---CCCc--------------------c
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWC---DGGP--------------------L 109 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~---~~~~--------------------~ 109 (429)
++||||||+|++|+++|+.+++.|.+|+||||....+++|..++|.+..... .... +
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 5699999999999999999999999999999999777777777665554221 1111 2
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehH
Q 014198 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQ 189 (429)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 189 (429)
..++.++.+..+.+. +.+.. +.-...|.+....... ... ... ...+.....
T Consensus 83 ~~~~~~s~~~i~~L~-~~Gv~--f~~~~~g~~~~~~~gg---------------------~~~-~R~----~~~~~~tG~ 133 (589)
T PRK08641 83 KAMCEAAPGIIHLLD-RMGVM--FNRTPEGLLDFRRFGG---------------------TLH-HRT----AFAGATTGQ 133 (589)
T ss_pred HHHHHHHHHHHHHHH-HcCCC--cccCCCCcEeeeccCC---------------------eec-ccc----cccCCCcHH
Confidence 222333333333222 23331 1100001000000000 000 000 001112345
Q ss_pred HHHHHHHHHHHhhcC----cEEEEce-EEEEEEccCCcEEEEEEeC---Ce--EEEcCEEEEcCCCCch
Q 014198 190 LFTKTLLNKAVNDYG----LEVVIGK-VERVGVGEGGRVESVMIEG---GR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 190 ~l~~~l~~~~~~~~G----v~v~~~~-v~~i~~~~~g~v~~v~~~~---g~--~i~ad~vV~a~G~~s~ 248 (429)
.++..|.+.+ ++.+ ++++.++ ++++..+++++|.+|...+ +. .+.|+.||+|||+++.
T Consensus 134 ~i~~~L~~~~-~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 134 QLLYALDEQV-RRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred HHHHHHHHHH-HhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 6777888777 4433 8899999 9998875468899987653 32 5789999999999886
No 114
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.40 E-value=7e-12 Score=120.45 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=95.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------chh
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LSS 111 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~~ 111 (429)
.++||||||+|.+|+++|+.+. .|.+|+||||....++.|..++|.+.... +... +..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~-~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR-NKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC-CCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4689999999999999999985 79999999999866666665555444211 1111 122
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHH
Q 014198 112 LARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLF 191 (429)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 191 (429)
+..++.+..+.+. +.+..+ ... .+.+.+..... ...... ..........+
T Consensus 81 ~~~~s~e~i~wL~-~~Gv~f--~~~-~~~~~~~~~g~----------------------~~~~r~----~~~~~~~g~~l 130 (433)
T PRK06175 81 LANESIENINKLI-DMGLNF--DKD-EKELSYTKEGA----------------------HSVNRI----VHFKDNTGKKV 130 (433)
T ss_pred HHHHHHHHHHHHH-HcCCcc--ccC-CCceeeeccCc----------------------cccCeE----EecCCCChHHH
Confidence 2222333333222 222211 000 00000000000 000000 00001123568
Q ss_pred HHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEE-eCCe--EEEcCEEEEcCCCCch
Q 014198 192 TKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMI-EGGR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 192 ~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~-~~g~--~i~ad~vV~a~G~~s~ 248 (429)
++.|.+.++++.|+++++++ +++|..+ ++++.+|.. .++. .+.|+.||+|||++..
T Consensus 131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 131 EKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 88898888334699999999 9999876 677777653 3443 5899999999998764
No 115
>PRK07236 hypothetical protein; Provisional
Probab=99.40 E-value=1.8e-10 Score=109.76 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=87.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
+..+|+|||||++|+++|+.|++.|++|+|+||.+.... ....|+. +...+.+++++ ++...
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--~~g~gi~------------l~~~~~~~l~~----lg~~~ 66 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD--GRGAGIV------------LQPELLRALAE----AGVAL 66 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC--CCCceeE------------eCHHHHHHHHH----cCCCc
Confidence 357999999999999999999999999999999862110 1111111 11122233332 33211
Q ss_pred C--cCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEE
Q 014198 132 N--YGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVI 209 (429)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~ 209 (429)
. ........ .+.... +. .+.. .. .....+....+.+.|.+.+ .++++++
T Consensus 67 ~~~~~~~~~~~-~~~~~~-------------g~---~~~~-----~~----~~~~~~~~~~l~~~L~~~~---~~~~i~~ 117 (386)
T PRK07236 67 PADIGVPSRER-IYLDRD-------------GR---VVQR-----RP----MPQTQTSWNVLYRALRAAF---PAERYHL 117 (386)
T ss_pred ccccccCccce-EEEeCC-------------CC---Eeec-----cC----CCccccCHHHHHHHHHHhC---CCcEEEc
Confidence 0 00000000 000000 00 0000 00 0001123345556665544 3578999
Q ss_pred ce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHh
Q 014198 210 GK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFEL 252 (429)
Q Consensus 210 ~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~ 252 (429)
++ |++++.+ ++.+ .|++.+|.+++||.||.|+|.+|.....
T Consensus 118 ~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vIgADG~~S~vR~~ 159 (386)
T PRK07236 118 GETLVGFEQD-GDRV-TARFADGRRETADLLVGADGGRSTVRAQ 159 (386)
T ss_pred CCEEEEEEec-CCeE-EEEECCCCEEEeCEEEECCCCCchHHHH
Confidence 99 9999887 4444 4777788899999999999999987763
No 116
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=9e-12 Score=124.12 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEE---eCCe--EEEcCEEEEcCCCCchH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMI---EGGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~---~~g~--~i~ad~vV~a~G~~s~~ 249 (429)
..+++.|.+.+ ++.|+++++++ |+++..+ ++++.++.. .++. .+.|+.||+|||+++..
T Consensus 135 ~~i~~~L~~~~-~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNL-RRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHH-hhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 57888999988 77899999999 9999876 788777754 2443 58999999999998753
No 117
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.40 E-value=1.1e-11 Score=122.44 Aligned_cols=162 Identities=22% Similarity=0.246 Sum_probs=96.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------ch
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LS 110 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~ 110 (429)
+.++||||||+|++|+++|+.++ .|.+|+||||....+++|..++|.+......... +.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 56789999999999999999996 4999999999987666666665544432211111 22
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcCeeee-eeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-ccccee---
Q 014198 111 SLARASFNLHRSLAEELNGPDNYGYRAL-TTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTTAQ--- 185 (429)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~--- 185 (429)
.++.++.+.++.+. +.+.. +... +.+... ...+. .+....
T Consensus 86 ~~~~~s~~~i~wL~-~~Gv~----f~~~~~~~~~~------------------------------~~~g~s~~r~~~~~d 130 (553)
T PRK07395 86 FLVEQAPEAIASLV-EMGVA----FDRHGQHLALT------------------------------LEAAHSRPRVLHAAD 130 (553)
T ss_pred HHHHHHHHHHHHHH-hcCCe----eecCCCceeee------------------------------cccccccCeEEEeCC
Confidence 23333333333322 22221 1000 000000 00000 000000
Q ss_pred EehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEcc-CCcEEEEEEe-CCe--EEEcCEEEEcCCCCch
Q 014198 186 VHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGE-GGRVESVMIE-GGR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~-~g~v~~v~~~-~g~--~i~ad~vV~a~G~~s~ 248 (429)
-....++..|.+.+.++.|+++++++ ++++..++ +++|.+|.+. ++. .+.|+.||+|||++..
T Consensus 131 ~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 131 TTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence 02356788888888334599999999 99998763 3788888654 343 4789999999999654
No 118
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.39 E-value=1.4e-11 Score=122.98 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=95.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCC--CCc---------------------chh
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD--GGP---------------------LSS 111 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~--~~~---------------------~~~ 111 (429)
||||||+|++|+++|+.++++|.+|+||||....++.|..++|.+...... ... +..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 899999999999999999999999999999986555555544444432211 101 111
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHH
Q 014198 112 LARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLF 191 (429)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 191 (429)
++.++.+..+.+ .+.+.. +.....+.+.... ...... ... ..........+
T Consensus 81 ~~~~s~~~i~~L-~~~Gv~--f~~~~~g~~~~~~---------------------~gg~~~-~r~----~~~~~~~G~~i 131 (566)
T TIGR01812 81 MCQEAPKAILEL-EHWGVP--FSRTPDGRIAQRP---------------------FGGHSK-DRT----CYAADKTGHAL 131 (566)
T ss_pred HHHHHHHHHHHH-HHcCCc--ceecCCCcEeecc---------------------cccccc-Cee----EECCCCCHHHH
Confidence 122222222222 122221 0000000000000 000000 000 00000123467
Q ss_pred HHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchH
Q 014198 192 TKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 192 ~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~ 249 (429)
...|.+.+ ++.|+++++++ ++++..+ +++|.+|... ++. .+.|+.||+|||+++..
T Consensus 132 ~~~L~~~~-~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 132 LHTLYEQC-LKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHH-HHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 78888888 77799999999 9999887 7888877652 443 58999999999998753
No 119
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.39 E-value=1.5e-11 Score=121.51 Aligned_cols=61 Identities=28% Similarity=0.448 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe-CCe--EEEc-CEEEEcCCCCchHHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE-GGR--VVES-DAVVLALGPWSGKFE 251 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-~g~--~i~a-d~vV~a~G~~s~~~~ 251 (429)
..++..|.+.+ ++.|++|++++ |++|..+ +++|.+|... ++. .+.+ +.||+|||++..+..
T Consensus 217 ~~l~~~L~~~~-~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~e 282 (564)
T PRK12845 217 QALAAGLFAGV-LRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDME 282 (564)
T ss_pred HHHHHHHHHHH-HHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHH
Confidence 56778888888 88899999999 9999876 7889888654 332 4556 689999999998754
No 120
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=1.7e-11 Score=122.23 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=101.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccC--CCCc--------------------
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWC--DGGP-------------------- 108 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~--~~~~-------------------- 108 (429)
+..+||||||+|.+|+++|+.+++.|.+|+||||.....+.|..+.|.+..... ....
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 346899999999999999999999999999999998666666555555443221 0011
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEeh
Q 014198 109 LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHP 188 (429)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 188 (429)
+..++.++.+....+. +.+.. +.....|.+....... ....+.. ... ... ...+.-..
T Consensus 90 v~~~~~~a~~~i~~L~-~~Gv~--f~~~~~G~~~~~~~gg-------------~s~~~~~-~~~-~r~----~~~~~~tG 147 (591)
T PRK07057 90 IEFMCREAPNVVYELE-HFGMP--FDRNADGTIYQRPFGG-------------HTANYGE-KPV-QRA----CAAADRTG 147 (591)
T ss_pred HHHHHHHHHHHHHHHH-hcCCc--ceeCCCCcEeeeccCC-------------ccccccC-Ccc-cee----eecCCCCh
Confidence 1122222333333222 23331 1111111111100000 0000000 000 000 00001113
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~ 249 (429)
..+++.|.+.+ .+.|++++.++ ++++..++++++.+|... ++. .+.|+.||+|||+++..
T Consensus 148 ~~l~~~L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 148 HALLHTLYQQN-VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred HHHHHHHHHHH-HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 56888899888 78899999999 999987646788888763 343 67899999999998754
No 121
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.39 E-value=1.2e-10 Score=112.24 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=49.6
Q ss_pred eEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 185 QVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.+++..|.+.|.+.+ . ...+++++ |+++..+ ++.+ .|.+.++.++++|.||.|+|.+|....
T Consensus 101 ~i~R~~l~~~L~~~~-~--~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vVgADG~~S~vR~ 163 (414)
T TIGR03219 101 SVHRADFLDALLKHL-P--EGIASFGKRATQIEEQ-AEEV-QVLFTDGTEYRCDLLIGADGIKSALRD 163 (414)
T ss_pred cCCHHHHHHHHHHhC-C--CceEEcCCEEEEEEec-CCcE-EEEEcCCCEEEeeEEEECCCccHHHHH
Confidence 467888998888877 4 35678899 9999876 4443 577778888999999999999997554
No 122
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.39 E-value=4.1e-10 Score=111.57 Aligned_cols=168 Identities=23% Similarity=0.248 Sum_probs=92.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH----HH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA----EE 126 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~ 126 (429)
.+..+|+|||||++|+++|+.|+++|++|+|+||..... +..|.+.. -..+...+++.++++. .+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~----r~~G~~~~-------~I~L~pngl~aLe~LGl~~~e~ 147 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAI----RGEGKYRG-------PIQIQSNALAALEAIDIDVAEQ 147 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecccccc----ccccccCc-------ccccCHHHHHHHHHcCcchHHH
Confidence 456899999999999999999999999999999975110 00000000 0112233334444431 11
Q ss_pred hCCCCCcCeeeeeee-EEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCc
Q 014198 127 LNGPDNYGYRALTTL-SLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGL 205 (429)
Q Consensus 127 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv 205 (429)
+... .......+ .+..... ......+ +... .....+ .+....++...|.+.|.+.+ .. .
T Consensus 148 l~~~---g~~~~~~i~~~~d~~~-----------G~~~~~~-~~~~-~~~~~g-~p~~~~I~R~~L~~~L~~al-g~--~ 207 (668)
T PLN02927 148 VMEA---GCITGDRINGLVDGIS-----------GSWYVKF-DTFT-PAASRG-LPVTRVISRMTLQQILARAV-GE--D 207 (668)
T ss_pred HHhh---cCcccceeeeeeecCC-----------CceEeec-cccc-cccccC-CCeEEEEeHHHHHHHHHhhC-CC--C
Confidence 1100 00000000 0000000 0000000 0000 000001 12345688888888887765 22 2
Q ss_pred EEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 206 EVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 206 ~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.+++++ |++++.+ ++.+. |++.++.++++|.||.|+|.+|....
T Consensus 208 ~i~~g~~V~~I~~~-~d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~ 252 (668)
T PLN02927 208 VIRNESNVVDFEDS-GDKVT-VVLENGQRYEGDLLVGADGIWSKVRN 252 (668)
T ss_pred EEEcCCEEEEEEEe-CCEEE-EEECCCCEEEcCEEEECCCCCcHHHH
Confidence 367788 9999876 55554 77778888999999999999998776
No 123
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.38 E-value=1.3e-11 Score=123.08 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=55.6
Q ss_pred eeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe-CCe--EEEc-CEEEEcCCCCchHHHh
Q 014198 184 AQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE-GGR--VVES-DAVVLALGPWSGKFEL 252 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-~g~--~i~a-d~vV~a~G~~s~~~~~ 252 (429)
..+++..+++.|.+.+ ++.|++|++++ |++|..+ ++++.+|... ++. .++| +.||+|+|+|+.+..+
T Consensus 212 ~~~~g~~l~~~L~~~a-~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 212 HLVNGNALVARLLKSA-EDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred cccCHHHHHHHHHHHH-HhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 4467788999999999 88999999999 9999887 7888887664 232 5788 9999999999987763
No 124
>PRK12839 hypothetical protein; Provisional
Probab=99.37 E-value=1.6e-11 Score=121.72 Aligned_cols=65 Identities=29% Similarity=0.530 Sum_probs=52.7
Q ss_pred EehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC--Ce-EE-EcCEEEEcCCCCchHHH
Q 014198 186 VHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG--GR-VV-ESDAVVLALGPWSGKFE 251 (429)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~--g~-~i-~ad~vV~a~G~~s~~~~ 251 (429)
+++..++..|.+.+ ++.|++|+.++ ++++..+++++|.+|...+ +. .+ .++.||+|||+++.+..
T Consensus 211 ~~g~~l~~~L~~~a-~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 211 VNGTALTGRLLRSA-DDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred ccHHHHHHHHHHHH-HHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHH
Confidence 46788999999999 88899999999 9999875468888887642 32 33 45899999999998665
No 125
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=1.5e-11 Score=122.71 Aligned_cols=168 Identities=21% Similarity=0.193 Sum_probs=98.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcCCCCccccccccCCeeeeccCC--CCc-----------------
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKG---AAVTLIEKSSVACAASGKAGGFLALDWCD--GGP----------------- 108 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G---~~V~lie~~~~~~~~s~~~~g~~~~~~~~--~~~----------------- 108 (429)
..++||+|||+|++|+++|+.+++.| .+|+||||....+++|..++|.+...+.. ...
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 34689999999999999999999998 89999999997666666665544432221 111
Q ss_pred ---chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCcccccee
Q 014198 109 ---LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQ 185 (429)
Q Consensus 109 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 185 (429)
+..++.++.+.++.+ .+++.. +.....|.+....... ... ... .....
T Consensus 83 ~~lv~~~~~~s~~~i~~L-~~~Gv~--f~~~~~G~~~~~~~~g---------------------~~~-~r~----~~~~d 133 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFL-DHWGVP--WSRRPDGRISQRPFGG---------------------MSF-PRT----TFAAD 133 (577)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCe--eEecCCCcEeeeecCC---------------------ccc-cee----eEcCC
Confidence 122222333333222 223321 1100111110000000 000 000 00000
Q ss_pred EehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCch
Q 014198 186 VHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~ 248 (429)
-....+++.|.+.+++..|+++++++ ++++..+ ++++.++... ++. .+.|+.||+|||+++.
T Consensus 134 ~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 134 KTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred CchHHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 12356788888888333699999999 9999877 7888777542 443 5899999999999854
No 126
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=2.2e-11 Score=121.44 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=99.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCC-CCc---------------------c
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD-GGP---------------------L 109 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~-~~~---------------------~ 109 (429)
.++||+|||+|++|+++|+.+++. .+|+|+||....+++|..+.|.+...... ... +
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 468999999999999999999986 99999999987666666665554432210 111 1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccce--eEe
Q 014198 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTA--QVH 187 (429)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~ 187 (429)
..++.++.+..+.+ .+++.. +.....+.+....... ....+... ....... .-.
T Consensus 83 ~~~~~~~~~~i~~L-~~~Gv~--f~~~~~g~~~~~~~gg-------------~s~~~~~~--------~~~r~~~~~~~t 138 (583)
T PRK08205 83 EIMAKEAIDAVLDL-EKMGLP--FNRTPEGKIDQRRFGG-------------HTRDHGKA--------PVRRACYAADRT 138 (583)
T ss_pred HHHHHHHHHHHHHH-HHcCCc--cccCCCCceeeccccc-------------ccccccCC--------CccceeccCCCC
Confidence 11222233332222 223331 1000001000000000 00000000 0000000 013
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccC---CcEEEEEEe---CCe--EEEcCEEEEcCCCCchHH
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEG---GRVESVMIE---GGR--VVESDAVVLALGPWSGKF 250 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~---g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~~ 250 (429)
...+++.|.+.+ ++.|+++++++ |+++..+++ ++|.++... ++. .+.|+.||+|||+++...
T Consensus 139 G~~i~~~L~~~~-~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~ 209 (583)
T PRK08205 139 GHMILQTLYQNC-VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVY 209 (583)
T ss_pred HHHHHHHHHHHH-HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccC
Confidence 467888999988 78899999999 999987632 788888652 343 578999999999987543
No 127
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.37 E-value=2.2e-12 Score=118.52 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=110.4
Q ss_pred CcccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC
Q 014198 1 MAATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA 77 (429)
Q Consensus 1 ~~~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~ 77 (429)
++.|+||||++|..+ ||..+. +...+++.+...+.... .....|++||+|.+|+.+|..|...++
T Consensus 170 ys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~------------~~~~~vV~vG~G~ig~Evaa~l~~~~~ 237 (478)
T KOG1336|consen 170 YSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAI------------QLGGKVVCVGGGFIGMEVAAALVSKAK 237 (478)
T ss_pred cceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHh------------ccCceEEEECchHHHHHHHHHHHhcCc
Confidence 367999999999876 677655 55556555555433222 335679999999999999999999999
Q ss_pred cEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcc
Q 014198 78 AVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSN 157 (429)
Q Consensus 78 ~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (429)
+|++|++.+ ...+++..
T Consensus 238 ~VT~V~~e~-------------------------------~~~~~lf~-------------------------------- 254 (478)
T KOG1336|consen 238 SVTVVFPEP-------------------------------WLLPRLFG-------------------------------- 254 (478)
T ss_pred eEEEEccCc-------------------------------cchhhhhh--------------------------------
Confidence 999999988 22222111
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEc
Q 014198 158 KANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVES 236 (429)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~a 236 (429)
..+-+.+.+.+ ++.|++++.++ +.+++.+++|++..|.+.++.++.|
T Consensus 255 -------------------------------~~i~~~~~~y~-e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~a 302 (478)
T KOG1336|consen 255 -------------------------------PSIGQFYEDYY-ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEA 302 (478)
T ss_pred -------------------------------HHHHHHHHHHH-HhcCeEEEEecceeecccCCCCcEEEEEeccCCEecc
Confidence 01222677777 88899999999 9999988789999999999999999
Q ss_pred CEEEEcCCCCchHHH
Q 014198 237 DAVVLALGPWSGKFE 251 (429)
Q Consensus 237 d~vV~a~G~~s~~~~ 251 (429)
|.||+++|+.++.-.
T Consensus 303 dlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 303 DLVVVGIGIKPNTSF 317 (478)
T ss_pred CeEEEeecccccccc
Confidence 999999998665443
No 128
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.36 E-value=2.1e-11 Score=121.30 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=98.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSSVACAASGKAGGFLALDWCDGGP-------------------- 108 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~-------------------- 108 (429)
+.++||+|||+|++|+++|+.+++. |.+|+||||....+++|..++|.+.........
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 3468999999999999999999987 479999999986666666665544432211111
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-ccccee--
Q 014198 109 LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTTAQ-- 185 (429)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~-- 185 (429)
+..++.++.+..+.|. +.+.. +.-...|.+.... ..+. ......
T Consensus 82 v~~~~~~s~~~i~~L~-~~Gv~--f~~~~~g~~~~~~------------------------------~gg~~~~r~~~~~ 128 (582)
T PRK09231 82 VEYFVHHCPTEMTQLE-QWGCP--WSRKPDGSVNVRR------------------------------FGGMKIERTWFAA 128 (582)
T ss_pred HHHHHHHHHHHHHHHH-HcCCC--cccCCCCceeeec------------------------------cccccCCeeEecC
Confidence 2223333333333322 23331 1111111110000 0000 000000
Q ss_pred -EehHHHHHHHHHHHHhh-cCcEEEEce-EEEEEEccCCcEEEEEE---eCC--eEEEcCEEEEcCCCCchH
Q 014198 186 -VHPQLFTKTLLNKAVND-YGLEVVIGK-VERVGVGEGGRVESVMI---EGG--RVVESDAVVLALGPWSGK 249 (429)
Q Consensus 186 -~~~~~l~~~l~~~~~~~-~Gv~v~~~~-v~~i~~~~~g~v~~v~~---~~g--~~i~ad~vV~a~G~~s~~ 249 (429)
-....+...|.+.+ .+ .++++++++ ++++..+ ++++.++.. .++ ..+.|+.||+|||+++..
T Consensus 129 ~~~G~~i~~~L~~~~-~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 129 DKTGFHMLHTLFQTS-LKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred CCcHHHHHHHHHHHh-hcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 01346777888877 44 489999999 9999987 788877654 245 368999999999988854
No 129
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.36 E-value=2.1e-11 Score=119.63 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=96.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCC-ccccccccCCeeeeccCCCCc--------------------c
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSV-ACAASGKAGGFLALDWCDGGP--------------------L 109 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~-~~~~s~~~~g~~~~~~~~~~~--------------------~ 109 (429)
+.++||+|||+|++|+++|+.++ |.+|+||||... .+++|..++|.+......... +
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 45789999999999999999996 579999999986 455666555555432211111 1
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-cccc----e
Q 014198 110 SSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTT----A 184 (429)
Q Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~----~ 184 (429)
..++..+.+.++.+. +.+.. +.....|.+... ...+. .+.. +
T Consensus 85 ~~~~~~s~~~i~wL~-~~Gv~--f~~~~~G~~~~~------------------------------~~~~~~~~r~~~~~g 131 (513)
T PRK07512 85 ALITAEAPAAIEDLL-RLGVP--FDRDADGRLALG------------------------------LEAAHSRRRIVHVGG 131 (513)
T ss_pred HHHHHHHHHHHHHHH-HhCCc--cccCCCCccccc------------------------------cccCccCCcEEEcCC
Confidence 222233333332222 22221 100000000000 00000 0000 1
Q ss_pred eEehHHHHHHHHHHHHhh-cCcEEEEce-EEEEEEccCCcEEEEEEeC-Ce--EEEcCEEEEcCCCCch
Q 014198 185 QVHPQLFTKTLLNKAVND-YGLEVVIGK-VERVGVGEGGRVESVMIEG-GR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~-~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-g~--~i~ad~vV~a~G~~s~ 248 (429)
.-....+++.|.+.+ ++ .|++++.++ |+++..+ +++|.++.+.+ +. .+.|+.||+|||+++.
T Consensus 132 ~~~G~~l~~~L~~~~-~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 132 DGAGAAIMRALIAAV-RATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred CCCHHHHHHHHHHHH-HhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence 123467888999888 55 489999999 9999876 78888877643 32 5899999999999764
No 130
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.36 E-value=3.1e-11 Score=119.82 Aligned_cols=167 Identities=20% Similarity=0.124 Sum_probs=99.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------ch
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LS 110 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~ 110 (429)
++||+|||+|++|+++|+.+++. |.+|+||||....++.+..++|.+......... +.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 57999999999999999999987 589999999987666665565554322111111 22
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHH
Q 014198 111 SLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQL 190 (429)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 190 (429)
.++.++.+..+.|. +.+.. +.-...|.+........ ...+. ... ..-....
T Consensus 83 ~l~~~s~~~i~~L~-~~Gv~--f~~~~~g~~~~~~~gg~----------------------~~~R~--~~~--~~~~G~~ 133 (580)
T TIGR01176 83 YFVAEAPKEMVQLE-HWGCP--WSRKPDGRVNVRRFGGM----------------------KKERT--WFA--ADKTGFH 133 (580)
T ss_pred HHHHHhHHHHHHHH-HcCCc--cEecCCCceeeeccCCc----------------------cCCee--eec--CCCCHHH
Confidence 33344444444332 23331 11111111110000000 00000 000 0012356
Q ss_pred HHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CC--eEEEcCEEEEcCCCCchH
Q 014198 191 FTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GG--RVVESDAVVLALGPWSGK 249 (429)
Q Consensus 191 l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g--~~i~ad~vV~a~G~~s~~ 249 (429)
+++.|.+.+.+..++++++++ ++++..+ +++|.++..- ++ ..+.|+.||+|||+++..
T Consensus 134 i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 134 MLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 888888888333589999999 9999987 7888887642 44 468899999999998864
No 131
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.36 E-value=2.4e-12 Score=132.22 Aligned_cols=141 Identities=21% Similarity=0.236 Sum_probs=100.2
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.|||||||+|+.| ||.... ++..+++.+...+.... ....+++|||||.+|+++|..|++.|.+|
T Consensus 104 ~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~------------~~~k~vvVIGgG~iGlE~A~~L~~~G~~V 171 (847)
T PRK14989 104 KLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA------------RRSKRGAVVGGGLLGLEAAGALKNLGVET 171 (847)
T ss_pred EEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH------------hcCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 5899999999876 565433 44444443333221111 22457999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHH-HHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHR-SLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
+|||+.+ .++. .+..+
T Consensus 172 tvVe~~~-------------------------------~ll~~~ld~~-------------------------------- 188 (847)
T PRK14989 172 HVIEFAP-------------------------------MLMAEQLDQM-------------------------------- 188 (847)
T ss_pred EEEeccc-------------------------------cchhhhcCHH--------------------------------
Confidence 9999876 2221 11111
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcC
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESD 237 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad 237 (429)
..+.+.+.+ ++.|+++++++ +++|..++++....+.+.+|.++.+|
T Consensus 189 --------------------------------~~~~l~~~L-~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D 235 (847)
T PRK14989 189 --------------------------------GGEQLRRKI-ESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD 235 (847)
T ss_pred --------------------------------HHHHHHHHH-HHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC
Confidence 112667777 88899999999 99997642344556778888899999
Q ss_pred EEEEcCCCCchHHH
Q 014198 238 AVVLALGPWSGKFE 251 (429)
Q Consensus 238 ~vV~a~G~~s~~~~ 251 (429)
.||+|+|...+.-+
T Consensus 236 ~Vv~A~G~rPn~~L 249 (847)
T PRK14989 236 FIVFSTGIRPQDKL 249 (847)
T ss_pred EEEECCCcccCchH
Confidence 99999997766543
No 132
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=4.1e-11 Score=118.76 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=96.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCC-ccccccccCCeeeeccCCCCc--------------------ch
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSV-ACAASGKAGGFLALDWCDGGP--------------------LS 110 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~-~~~~s~~~~g~~~~~~~~~~~--------------------~~ 110 (429)
.++||||||+|.+|+++|+.+ +.|.+|+||||... .+|++..+.|.++........ +.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 468999999999999999999 99999999999875 456666666666543221111 11
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCc-cccc---eeE
Q 014198 111 SLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGS-TQTT---AQV 186 (429)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~---~~~ 186 (429)
.++..+.+.+..+ .+++.. +.....|.+... ..-+. .+.. +..
T Consensus 85 ~~~~~s~~~i~~L-~~~Gv~--f~~~~~g~~~~~------------------------------~~~g~~~~r~~~~~~~ 131 (543)
T PRK06263 85 ILVKEAPKRLKDL-EKFGAL--FDRTEDGEIAQR------------------------------PFGGQSFNRTCYAGDR 131 (543)
T ss_pred HHHHHHHHHHHHH-HHcCCc--ceeCCCCceeec------------------------------ccCCeEcCeEEECCCC
Confidence 1222222222222 122221 100000000000 00000 0000 001
Q ss_pred ehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCch
Q 014198 187 HPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 187 ~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~ 248 (429)
....++..|.+.+ ++.|+++++++ ++++..+++++|.++... ++. .+.|+.||+|||++..
T Consensus 132 ~G~~i~~~L~~~~-~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 132 TGHEMMMGLMEYL-IKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 2356888898888 77899999999 999987734448777642 343 5899999999998764
No 133
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.35 E-value=2.7e-11 Score=121.80 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=100.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCC-----CCc------------------
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCD-----GGP------------------ 108 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~-----~~~------------------ 108 (429)
..+||||||+|++|+.+|+.++++|.+|+||||.....++|..+.|-+...+.. ...
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~ 83 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQ 83 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCH
Confidence 468999999999999999999999999999999986666554444333221110 000
Q ss_pred --chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCC----CCccCcc--
Q 014198 109 --LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARS----PTTIGST-- 180 (429)
Q Consensus 109 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~-- 180 (429)
...++..+.+.++.+. ..+. +|.....|...+.. .....+..+..... ....+..
T Consensus 84 ~~vr~~v~~sp~~i~~L~-~~Gv--~f~r~~~g~~~~~~--------------~g~~~~~~~~~~~~~~i~~r~~GG~~~ 146 (657)
T PRK08626 84 EVARMFVHTAPKAVRELA-AWGV--PWTRVTAGPRTVVI--------------NGEKVTITEKEEAHGLINARDFGGTKK 146 (657)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCC--CCeecCCCcccccc--------------ccccccccccccccccccccccccccc
Confidence 1222333333333332 2232 11110001000000 00011111111100 0011110
Q ss_pred -----ccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchH
Q 014198 181 -----QTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 181 -----~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~ 249 (429)
..++ ....++..|.+.+ .+.|+++++++ +++|..+ ++++.++... +|. .+.|+.||+|||++...
T Consensus 147 ~R~~~~~d~--tG~~l~~~L~~~~-~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 147 WRTCYTADG--TGHTMLYAVDNEA-IKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred ceeEecCCC--cHHHHHHHHHHHH-HhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 0011 1345777888888 78899999999 9999987 7888887664 343 46899999999988764
No 134
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.35 E-value=2.7e-11 Score=120.75 Aligned_cols=61 Identities=26% Similarity=0.429 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC--Ce-EEEcC-EEEEcCCCCchHHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG--GR-VVESD-AVVLALGPWSGKFE 251 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~--g~-~i~ad-~vV~a~G~~s~~~~ 251 (429)
..+.+.|.+.+ ++.|++|+.++ |+++..+ +++|.+|.+.+ +. .+.++ .||+|+|.++.+..
T Consensus 214 ~~l~~~L~~~~-~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 214 NALAARLAKSA-LDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HHHHHHHHHHH-HhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHH
Confidence 56788888888 88899999999 9999987 78888887754 32 47775 79999999997666
No 135
>PLN02661 Putative thiazole synthesis
Probab=99.35 E-value=2.2e-11 Score=110.58 Aligned_cols=139 Identities=24% Similarity=0.336 Sum_probs=88.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKK-GAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~-G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.++||+|||||++|+++|++|++. |++|+||||....+|..+..+.++.. + ... ....++.++++..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~-~--------vv~---~~a~e~LeElGV~ 158 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSA-M--------VVR---KPAHLFLDELGVP 158 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccc-c--------ccc---cHHHHHHHHcCCC
Confidence 468999999999999999999986 89999999987333322221111111 1 000 0112334444442
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
. ...+.+ ....+...+.+.|.+.+.++.|++++.+
T Consensus 159 f----d~~dgy-----------------------------------------~vv~ha~e~~stLi~ka~~~~gVkI~~~ 193 (357)
T PLN02661 159 Y----DEQENY-----------------------------------------VVIKHAALFTSTIMSKLLARPNVKLFNA 193 (357)
T ss_pred c----ccCCCe-----------------------------------------eEecchHHHHHHHHHHHHhcCCCEEEeC
Confidence 1 100000 0011334566788887745679999999
Q ss_pred e-EEEEEEccCCcEEEEEEe------C--C------eEEEcCEEEEcCCCCch
Q 014198 211 K-VERVGVGEGGRVESVMIE------G--G------RVVESDAVVLALGPWSG 248 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~------~--g------~~i~ad~vV~a~G~~s~ 248 (429)
+ ++++..+ ++++.+|.+. + + ..++|+.||+|||....
T Consensus 194 t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 194 VAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred eEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence 9 9999987 7888887741 1 1 36899999999996553
No 136
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.35 E-value=6.3e-12 Score=115.90 Aligned_cols=63 Identities=32% Similarity=0.520 Sum_probs=53.1
Q ss_pred ceeEehHHHHHHHHHHHHhhcCcEEEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCC
Q 014198 183 TAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPW 246 (429)
Q Consensus 183 ~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~ 246 (429)
..++|...+.+.+.+.+....+++++...|++|..+ +++|.+|.+.+|..+.+|.||+|||.+
T Consensus 89 r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 89 RAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp EEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEec-CCeEEEEEeCCCCEEecCEEEEecccc
Confidence 358999999999999994447899986559999988 899999999999999999999999993
No 137
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.34 E-value=2.2e-11 Score=118.36 Aligned_cols=61 Identities=28% Similarity=0.525 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
...+.+.|.+.+ ++.|++++.+.++++..+ ++++.++.+ ++..+.++.||+|||+++....
T Consensus 119 G~~i~~~L~~~~-~~~gv~i~~~~v~~l~~~-~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 119 GKHIIKILYKHA-RELGVNFIRGFAEELAIK-NGKAYGVFL-DGELLKFDATVIATGGFSGLFK 179 (466)
T ss_pred hHHHHHHHHHHH-HhcCCEEEEeEeEEEEee-CCEEEEEEE-CCEEEEeCeEEECCCcCcCCCC
Confidence 356888999999 888999987558888766 778877777 5678999999999999987653
No 138
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.34 E-value=5.1e-12 Score=120.64 Aligned_cols=140 Identities=20% Similarity=0.325 Sum_probs=95.5
Q ss_pred cccccCCCCCCCccCcce--EE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 014198 2 AATLLAPSSAPTYLPGLR--LT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAA 78 (429)
Q Consensus 2 ~~~~~a~g~~p~~~~g~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~ 78 (429)
-.+|||||++|..+|... .. +++.+++.+...+.... ....+|+|||+|.+|+++|..|++.|.+
T Consensus 102 d~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~------------~~~~~vvViGgG~ig~E~A~~l~~~g~~ 169 (396)
T PRK09754 102 DQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL------------QPERSVVIVGAGTIGLELAASATQRRCK 169 (396)
T ss_pred CEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHh------------hcCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 368999999998765322 11 44443333222221110 1245899999999999999999999999
Q ss_pred EEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 79 VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 79 V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
|+|+|+.+ .++....
T Consensus 170 Vtlv~~~~-------------------------------~~l~~~~---------------------------------- 184 (396)
T PRK09754 170 VTVIELAA-------------------------------TVMGRNA---------------------------------- 184 (396)
T ss_pred EEEEecCC-------------------------------cchhhhc----------------------------------
Confidence 99999876 1111100
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcC
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESD 237 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad 237 (429)
+..+.+.+.+.+ ++.|+++++++ |+++..+ +. ..+.+.+|.++.+|
T Consensus 185 -----------------------------~~~~~~~l~~~l-~~~GV~i~~~~~V~~i~~~--~~-~~v~l~~g~~i~aD 231 (396)
T PRK09754 185 -----------------------------PPPVQRYLLQRH-QQAGVRILLNNAIEHVVDG--EK-VELTLQSGETLQAD 231 (396)
T ss_pred -----------------------------CHHHHHHHHHHH-HHCCCEEEeCCeeEEEEcC--CE-EEEEECCCCEEECC
Confidence 011222566777 77899999999 9999752 22 34677788899999
Q ss_pred EEEEcCCCCchHHH
Q 014198 238 AVVLALGPWSGKFE 251 (429)
Q Consensus 238 ~vV~a~G~~s~~~~ 251 (429)
.||+|+|...+..+
T Consensus 232 ~Vv~a~G~~pn~~l 245 (396)
T PRK09754 232 VVIYGIGISANDQL 245 (396)
T ss_pred EEEECCCCChhhHH
Confidence 99999998876543
No 139
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.33 E-value=5.8e-12 Score=119.56 Aligned_cols=138 Identities=24% Similarity=0.367 Sum_probs=95.7
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..| ||... +++.+.+.+........ ....+|+|||||.+|+.+|..|++.|.+|+
T Consensus 102 ~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~------------~~~~~vvViGgG~~g~e~A~~L~~~g~~Vt 168 (377)
T PRK04965 102 KLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL------------RDAQRVLVVGGGLIGTELAMDLCRAGKAVT 168 (377)
T ss_pred EEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh------------hcCCeEEEECCCHHHHHHHHHHHhcCCeEE
Confidence 5899999999876 56544 44444332221111000 124589999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
++++.+ .++....
T Consensus 169 lv~~~~-------------------------------~~l~~~~------------------------------------ 181 (377)
T PRK04965 169 LVDNAA-------------------------------SLLASLM------------------------------------ 181 (377)
T ss_pred EEecCC-------------------------------cccchhC------------------------------------
Confidence 999876 1111000
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAV 239 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~v 239 (429)
+..+...+.+.+ ++.|+++++++ |+++..+ ++. ..+.+.++.++.+|.|
T Consensus 182 ---------------------------~~~~~~~l~~~l-~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~v 231 (377)
T PRK04965 182 ---------------------------PPEVSSRLQHRL-TEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAV 231 (377)
T ss_pred ---------------------------CHHHHHHHHHHH-HhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEE
Confidence 011222566677 78899999999 9999865 333 3467778889999999
Q ss_pred EEcCCCCchHH
Q 014198 240 VLALGPWSGKF 250 (429)
Q Consensus 240 V~a~G~~s~~~ 250 (429)
|+|+|..++.-
T Consensus 232 I~a~G~~p~~~ 242 (377)
T PRK04965 232 IAAAGLRPNTA 242 (377)
T ss_pred EECcCCCcchH
Confidence 99999877643
No 140
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.33 E-value=1.3e-12 Score=125.50 Aligned_cols=143 Identities=25% Similarity=0.357 Sum_probs=36.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCc
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNY 133 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (429)
||||||||++|+++|+.+++.|.+|+|||+.. +|+..+......+...+. .. .....++.++.+.+......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~-----~~--~~~~gi~~e~~~~~~~~~~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHD-----ED--QVIGGIFREFLNRLRARGGY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEH-----HH--HHHHHHHHHHHHST------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcch-----hh--ccCCCHHHHHHHHHhhhccc
Confidence 89999999999999999999999999999998 444332222111111000 00 11123444444433220000
Q ss_pred CeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-E
Q 014198 134 GYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-V 212 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v 212 (429)
... .. .. ......++|..+...|.+.+ .+.|+++++++ |
T Consensus 74 --------~~~-~~----------------~~--------------~~~~~~~~~~~~~~~l~~~l-~e~gv~v~~~t~v 113 (428)
T PF12831_consen 74 --------PQE-DR----------------YG--------------WVSNVPFDPEVFKAVLDEML-AEAGVEVLLGTRV 113 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------ccc-cc----------------cc--------------cccccccccccccccccccc-ccccccccccccc
Confidence 000 00 00 00113456666666777777 78899999999 9
Q ss_pred EEEEEccCCcEEEEEEeC---CeEEEcCEEEEcCCC
Q 014198 213 ERVGVGEGGRVESVMIEG---GRVVESDAVVLALGP 245 (429)
Q Consensus 213 ~~i~~~~~g~v~~v~~~~---g~~i~ad~vV~a~G~ 245 (429)
+++..+ +++|.+|++.+ ..+++|+.||.|||-
T Consensus 114 ~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 114 VDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------
T ss_pred cccccc-ccccccccccccccccccccccccccccc
Confidence 999998 78899998865 468999999999993
No 141
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.32 E-value=7.4e-11 Score=117.14 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC--CccccccccCCeee
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAGGFLA 100 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~--~~~~~s~~~~g~~~ 100 (429)
..++||||||+|.+|+++|+.+++.|.+|+||||.. ..+|+|..++|.++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~ 53 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLF 53 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCcee
Confidence 357899999999999999999999999999999998 45566665655544
No 142
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.31 E-value=1.7e-10 Score=111.24 Aligned_cols=71 Identities=28% Similarity=0.386 Sum_probs=57.3
Q ss_pred ccccceeEehHHHHHHHHHHHHhhcCcEEEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHH
Q 014198 179 STQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 179 ~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~ 250 (429)
....++++|...+.+.|.+.+ .+.||+++.++|+++..+++|.|..|++.+|.+++||.||.|+|..+...
T Consensus 144 ~~~~ayhlDR~~fd~~L~~~A-~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 144 PFNYAYHLDRAKFDQFLRRHA-EERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp TSS-EEEEEHHHHHHHHHHHH-HHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCC
T ss_pred CCCeeEEEeHHHHHHHHHHHH-hcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhh
Confidence 356789999999999999999 88899999988888877768888899999999999999999999766543
No 143
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.31 E-value=7.3e-12 Score=128.76 Aligned_cols=139 Identities=23% Similarity=0.339 Sum_probs=99.6
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.||||||+.|+.| ||.... +++.+++.+...+.... ....+++|||||.+|+.+|..|++.|.+|
T Consensus 99 ~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~------------~~~k~vvVVGgG~~GlE~A~~L~~~G~~V 166 (785)
T TIGR02374 99 KLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA------------QRFKKAAVIGGGLLGLEAAVGLQNLGMDV 166 (785)
T ss_pred EEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh------------hcCCeEEEECCCHHHHHHHHHHHhcCCeE
Confidence 6899999999876 565443 55555443333222111 22458999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHH-HHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRS-LAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
+|||+.+ .++.. +...
T Consensus 167 tvv~~~~-------------------------------~ll~~~ld~~-------------------------------- 183 (785)
T TIGR02374 167 SVIHHAP-------------------------------GLMAKQLDQT-------------------------------- 183 (785)
T ss_pred EEEccCC-------------------------------chhhhhcCHH--------------------------------
Confidence 9999876 22211 1111
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcC
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESD 237 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad 237 (429)
+.+.+.+.+ ++.|+++++++ ++++..+ +.+..|.+.+|.++.+|
T Consensus 184 --------------------------------~~~~l~~~l-~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D 228 (785)
T TIGR02374 184 --------------------------------AGRLLQREL-EQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEAD 228 (785)
T ss_pred --------------------------------HHHHHHHHH-HHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcC
Confidence 112566666 78899999999 9999753 44567888889899999
Q ss_pred EEEEcCCCCchHHH
Q 014198 238 AVVLALGPWSGKFE 251 (429)
Q Consensus 238 ~vV~a~G~~s~~~~ 251 (429)
.||+|+|...+.-+
T Consensus 229 ~Vi~a~G~~Pn~~l 242 (785)
T TIGR02374 229 LIVMAAGIRPNDEL 242 (785)
T ss_pred EEEECCCCCcCcHH
Confidence 99999997765543
No 144
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.31 E-value=1.3e-10 Score=114.78 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=98.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------ch
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LS 110 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~ 110 (429)
..++||||||+|++|+++|+.+++. .+|+||||....+++|..++|.+......... +.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 84 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVR 84 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHH
Confidence 3468999999999999999999987 89999999987677776666655443221111 11
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeE----
Q 014198 111 SLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQV---- 186 (429)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---- 186 (429)
.++..+.+.++.|. +.+.. |..... .... ........+.......+
T Consensus 85 ~~~~~~~~~i~~L~-~~Gv~----f~~~~~--------------------~~g~-----~~~~~~~~gg~~~~r~~~~~~ 134 (536)
T PRK09077 85 FIAENAREAVQWLI-DQGVP----FTTDEQ--------------------ANGE-----EGYHLTREGGHSHRRILHAAD 134 (536)
T ss_pred HHHHHHHHHHHHHH-HcCCc----cccCCC--------------------CCcc-----ccccccCCCCccCCceEecCC
Confidence 22222333333222 22221 100000 0000 00000000000000011
Q ss_pred -ehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEcc-----CCcEEEEEEe---CCe--EEEcCEEEEcCCCCchH
Q 014198 187 -HPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGE-----GGRVESVMIE---GGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 187 -~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~-----~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~ 249 (429)
....+...|.+.+++..|+++++++ ++++..++ ++++.+|... ++. .+.|+.||+|||+++..
T Consensus 135 ~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 135 ATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 2356777888888334589999999 99998652 3788888763 233 58999999999998753
No 145
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.30 E-value=9.1e-11 Score=115.42 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC-C--eEEEcC-EEEEcCCCCchHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG-G--RVVESD-AVVLALGPWSGKF 250 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-g--~~i~ad-~vV~a~G~~s~~~ 250 (429)
..++..+++.+.++.|+++++++ |++|..+ +++|.+|.... + ..++|+ .||+|||++..+.
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~ 238 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQND 238 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCH
Confidence 45777777777344599999999 9999887 78888886642 3 357885 7999999987653
No 146
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.30 E-value=5.9e-11 Score=118.65 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=47.5
Q ss_pred ehHHHHHHHHHHHHhhcC-cEEEEce-EEEEEEccCCcEEEEEE---eCCe--EEEcCEEEEcCCCCchH
Q 014198 187 HPQLFTKTLLNKAVNDYG-LEVVIGK-VERVGVGEGGRVESVMI---EGGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 187 ~~~~l~~~l~~~~~~~~G-v~v~~~~-v~~i~~~~~g~v~~v~~---~~g~--~i~ad~vV~a~G~~s~~ 249 (429)
+...+.+.|.+.+ ++.+ +++++++ |+++..+ ++++.+|.. .++. .+.|+.||+|||+++..
T Consensus 130 ~G~~~~~~L~~~a-~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (608)
T PRK06854 130 NGESYKPIVAEAA-KKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGI 197 (608)
T ss_pred ChHHHHHHHHHHH-HhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCchhhc
Confidence 4567778888888 6655 9999999 9999876 677777743 2343 68999999999998753
No 147
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.30 E-value=9.9e-12 Score=121.29 Aligned_cols=131 Identities=28% Similarity=0.410 Sum_probs=91.5
Q ss_pred ccccCCCCCCCccCcceEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..+||.... +++..+.. .. . ....+++|||||.+|+.+|..|++.|.+|
T Consensus 137 ~lViAtGs~p~~~pg~~~~~~~v~~~~~~~---~~------------~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~V 198 (462)
T PRK06416 137 NIILATGSRPRELPGIEIDGRVIWTSDEAL---NL------------D---EVPKSLVVIGGGYIGVEFASAYASLGAEV 198 (462)
T ss_pred EEEEeCCCCCCCCCCCCCCCCeEEcchHhh---Cc------------c---ccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 5899999999888876432 22221110 00 0 12358999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+++++.+. ++..+.
T Consensus 199 tli~~~~~-------------------------------~l~~~~----------------------------------- 212 (462)
T PRK06416 199 TIVEALPR-------------------------------ILPGED----------------------------------- 212 (462)
T ss_pred EEEEcCCC-------------------------------cCCcCC-----------------------------------
Confidence 99999761 100000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC---eEEE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG---RVVE 235 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g---~~i~ 235 (429)
..+...+.+.+ ++.|++++.++ |++++.+ ++.+ .+.+.++ .++.
T Consensus 213 -----------------------------~~~~~~l~~~l-~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~gg~~~~i~ 260 (462)
T PRK06416 213 -----------------------------KEISKLAERAL-KKRGIKIKTGAKAKKVEQT-DDGV-TVTLEDGGKEETLE 260 (462)
T ss_pred -----------------------------HHHHHHHHHHH-HHcCCEEEeCCEEEEEEEe-CCEE-EEEEEeCCeeEEEE
Confidence 11222566667 77899999999 9999876 4443 3555555 6799
Q ss_pred cCEEEEcCCCCchH
Q 014198 236 SDAVVLALGPWSGK 249 (429)
Q Consensus 236 ad~vV~a~G~~s~~ 249 (429)
+|.||+|+|...+.
T Consensus 261 ~D~vi~a~G~~p~~ 274 (462)
T PRK06416 261 ADYVLVAVGRRPNT 274 (462)
T ss_pred eCEEEEeeCCccCC
Confidence 99999999976654
No 148
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.29 E-value=8.4e-11 Score=117.19 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=52.6
Q ss_pred EehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC-e--EEEc-CEEEEcCCCCchHHH
Q 014198 186 VHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG-R--VVES-DAVVLALGPWSGKFE 251 (429)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g-~--~i~a-d~vV~a~G~~s~~~~ 251 (429)
.+...++..|.+.+ ++.|+++++++ |+++..+ +++|.+|.+.++ + .+.| +.||+|+|++..+..
T Consensus 218 ~~G~~l~~aL~~~~-~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~e 286 (578)
T PRK12843 218 VMGNALIGRLLYSL-RARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQ 286 (578)
T ss_pred cccHHHHHHHHHHH-HhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHH
Confidence 45678899999999 88999999999 9999876 788888877543 2 5776 789999999998744
No 149
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.29 E-value=1.3e-10 Score=115.28 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe-CCe--EEEc-CEEEEcCCCCchHHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE-GGR--VVES-DAVVLALGPWSGKFE 251 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-~g~--~i~a-d~vV~a~G~~s~~~~ 251 (429)
..++..|.+.+ ++.|+++++++ |++|..+ +++|.+|... +++ .+.| +.||+|||++..+..
T Consensus 208 ~~l~~~l~~~~-~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~e 273 (557)
T PRK12844 208 AALIGRMLEAA-LAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAE 273 (557)
T ss_pred HHHHHHHHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHH
Confidence 56778888888 88899999999 9999987 7889888764 332 5778 479999999998654
No 150
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.29 E-value=2e-11 Score=105.48 Aligned_cols=61 Identities=31% Similarity=0.402 Sum_probs=45.9
Q ss_pred EehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchH
Q 014198 186 VHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGK 249 (429)
Q Consensus 186 ~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~ 249 (429)
.....+.++|.+.+ ++.++++.+++ |+++.++ ++. +.|++.++.+++||.||+|+|.++..
T Consensus 79 ~~~~~v~~yl~~~~-~~~~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 79 PSGEEVLDYLQEYA-ERFGLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGHYSHP 140 (203)
T ss_dssp EBHHHHHHHHHHHH-HHTTGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---SSCSB
T ss_pred CCHHHHHHHHHHHH-hhcCcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeeccCCC
Confidence 55667778888888 88899999999 9999998 444 67888888789999999999986553
No 151
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.28 E-value=9.1e-11 Score=117.07 Aligned_cols=44 Identities=34% Similarity=0.268 Sum_probs=37.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCee
Q 014198 56 VAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFL 99 (429)
Q Consensus 56 vvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~ 99 (429)
|||||+|++|+++|+.+++.|.+|+||||.. ++.+.|..++|.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi 45 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGI 45 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhh
Confidence 6999999999999999999999999999998 6666665555443
No 152
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.28 E-value=1.6e-11 Score=119.90 Aligned_cols=133 Identities=28% Similarity=0.442 Sum_probs=90.2
Q ss_pred ccccCCCCCCCccCcceEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..+|+.... +++..+... .. ....+|+|||||.+|+++|..|++.|.+|
T Consensus 145 ~lViATGs~p~~~p~~~~~~~~~~~~~~~~~---------------~~---~~~~~vvIIGgG~~G~E~A~~l~~~g~~V 206 (472)
T PRK05976 145 NLLIATGSRPVELPGLPFDGEYVISSDEALS---------------LE---TLPKSLVIVGGGVIGLEWASMLADFGVEV 206 (472)
T ss_pred EEEEeCCCCCCCCCCCCCCCceEEcchHhhC---------------cc---ccCCEEEEECCCHHHHHHHHHHHHcCCeE
Confidence 5899999999877765321 222211100 00 12458999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+|+|+.+ .++..+
T Consensus 207 tli~~~~-------------------------------~il~~~------------------------------------ 219 (472)
T PRK05976 207 TVVEAAD-------------------------------RILPTE------------------------------------ 219 (472)
T ss_pred EEEEecC-------------------------------ccCCcC------------------------------------
Confidence 9999886 110000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC--eEEEc
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG--RVVES 236 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g--~~i~a 236 (429)
...+.+.+.+.+ ++.|++++.++ |+++..++++++..+.+.+| .++.+
T Consensus 220 ----------------------------~~~~~~~l~~~l-~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~ 270 (472)
T PRK05976 220 ----------------------------DAELSKEVARLL-KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEA 270 (472)
T ss_pred ----------------------------CHHHHHHHHHHH-HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEe
Confidence 011223566677 77899999999 99998521333444444455 46999
Q ss_pred CEEEEcCCCCchH
Q 014198 237 DAVVLALGPWSGK 249 (429)
Q Consensus 237 d~vV~a~G~~s~~ 249 (429)
|.||+|+|...+.
T Consensus 271 D~vi~a~G~~p~~ 283 (472)
T PRK05976 271 DKVLVSVGRRPNT 283 (472)
T ss_pred CEEEEeeCCccCC
Confidence 9999999976653
No 153
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.28 E-value=5.3e-11 Score=118.04 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=43.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeee
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLA 100 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~ 100 (429)
+.++||+|||+|++|+++|+.++++|.+|+||||....+|++..++|.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~ 54 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVW 54 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceee
Confidence 45789999999999999999999999999999999866677777766554
No 154
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.28 E-value=2.1e-11 Score=118.01 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=91.2
Q ss_pred ccccCCCCCCCcc---CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL---PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||... ..+...+ +. .. ....+++|||||.+|+++|..|++.|.+|
T Consensus 132 ~vIiAtGs~p~~p~~i~g~~~-~~~~~~~-----~~-~~------------~~~~~vvIIGgG~iG~E~A~~l~~~g~~V 192 (450)
T TIGR01421 132 HILIATGGKPSFPENIPGAEL-GTDSDGF-----FA-LE------------ELPKRVVIVGAGYIAVELAGVLHGLGSET 192 (450)
T ss_pred EEEEecCCCCCCCCCCCCCce-eEcHHHh-----hC-cc------------ccCCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence 5899999999876 44432 1121111 10 00 12358999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+|+++.+ .++..+..
T Consensus 193 tli~~~~-------------------------------~il~~~d~---------------------------------- 207 (450)
T TIGR01421 193 HLVIRHE-------------------------------RVLRSFDS---------------------------------- 207 (450)
T ss_pred EEEecCC-------------------------------CCCcccCH----------------------------------
Confidence 9999886 11111111
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC-eEEEcC
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG-RVVESD 237 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g-~~i~ad 237 (429)
.+.+.+.+.+ ++.|++++.++ |+++..++++. ..+++.++ ..+.+|
T Consensus 208 ------------------------------~~~~~~~~~l-~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D 255 (450)
T TIGR01421 208 ------------------------------MISETITEEY-EKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVD 255 (450)
T ss_pred ------------------------------HHHHHHHHHH-HHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcC
Confidence 1222566677 77899999999 99998652332 34566566 579999
Q ss_pred EEEEcCCCCchHH
Q 014198 238 AVVLALGPWSGKF 250 (429)
Q Consensus 238 ~vV~a~G~~s~~~ 250 (429)
.||+|+|...+.-
T Consensus 256 ~vi~a~G~~pn~~ 268 (450)
T TIGR01421 256 ELIWAIGRKPNTK 268 (450)
T ss_pred EEEEeeCCCcCcc
Confidence 9999999766643
No 155
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.28 E-value=1.3e-11 Score=120.46 Aligned_cols=131 Identities=24% Similarity=0.372 Sum_probs=92.3
Q ss_pred ccccCCCCCCCccCcceEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..||..... +++...+.. .. ....+++|||+|.+|+++|..|++.|.+|
T Consensus 140 ~lviATGs~p~~p~~~~~~~~~v~~~~~~~~------~~------------~~~~~v~IiGgG~~g~E~A~~l~~~g~~V 201 (461)
T PRK05249 140 KIVIATGSRPYRPPDVDFDHPRIYDSDSILS------LD------------HLPRSLIIYGAGVIGCEYASIFAALGVKV 201 (461)
T ss_pred EEEEcCCCCCCCCCCCCCCCCeEEcHHHhhc------hh------------hcCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 5899999999887643221 222222110 00 22468999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+|+++.+ .+...+.
T Consensus 202 tli~~~~-------------------------------~~l~~~d----------------------------------- 215 (461)
T PRK05249 202 TLINTRD-------------------------------RLLSFLD----------------------------------- 215 (461)
T ss_pred EEEecCC-------------------------------CcCCcCC-----------------------------------
Confidence 9999886 1111000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDA 238 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~ 238 (429)
..+...+.+.+ ++.|++++.++ |+++..+ ++.+ .+++.++.++++|.
T Consensus 216 -----------------------------~~~~~~l~~~l-~~~gI~v~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~ 263 (461)
T PRK05249 216 -----------------------------DEISDALSYHL-RDSGVTIRHNEEVEKVEGG-DDGV-IVHLKSGKKIKADC 263 (461)
T ss_pred -----------------------------HHHHHHHHHHH-HHcCCEEEECCEEEEEEEe-CCeE-EEEECCCCEEEeCE
Confidence 11223677777 77899999999 9999875 4433 35566777899999
Q ss_pred EEEcCCCCchH
Q 014198 239 VVLALGPWSGK 249 (429)
Q Consensus 239 vV~a~G~~s~~ 249 (429)
||+|+|...+.
T Consensus 264 vi~a~G~~p~~ 274 (461)
T PRK05249 264 LLYANGRTGNT 274 (461)
T ss_pred EEEeecCCccc
Confidence 99999977654
No 156
>PRK08275 putative oxidoreductase; Provisional
Probab=99.27 E-value=7.3e-11 Score=117.20 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~ 249 (429)
..+.+.|.+.+ ++.|+++++++ |++|..++++++.+|... ++. .+.|+.||+|||+++..
T Consensus 137 ~~i~~~L~~~~-~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 137 HDIKKVLYRQL-KRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHH-HHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 46788899988 77899999999 999987546778777642 343 57899999999997653
No 157
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.27 E-value=2.2e-10 Score=122.45 Aligned_cols=51 Identities=33% Similarity=0.357 Sum_probs=43.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeee
Q 014198 50 RHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLA 100 (429)
Q Consensus 50 ~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~ 100 (429)
.+..+||||||+|.+|+++|+.+++.|.+|+||||....+|+|..++|.++
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~ 456 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGIN 456 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccc
Confidence 356799999999999999999999999999999999866666665555443
No 158
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.26 E-value=7.7e-11 Score=114.51 Aligned_cols=63 Identities=22% Similarity=0.421 Sum_probs=53.1
Q ss_pred eeEehHHHHHHHHHHHHhhc-CcEEEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCc
Q 014198 184 AQVHPQLFTKTLLNKAVNDY-GLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247 (429)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~~~-Gv~v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s 247 (429)
+++|+..+.+.+.+.+ ++. |++++.++|+++..++++++.+|.+.+|..+.|+.||+|||.|.
T Consensus 91 aQVDr~~y~~~L~e~L-e~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 91 AQIDKVLYRKAMRNAL-ENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HhCCHHHHHHHHHHHH-HcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 6889999999999999 554 88888777777765436778899998888999999999999995
No 159
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.26 E-value=1.3e-10 Score=107.74 Aligned_cols=166 Identities=22% Similarity=0.232 Sum_probs=110.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCc--------------------chhhhH
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGP--------------------LSSLAR 114 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~--------------------~~~l~~ 114 (429)
||+|||+|++||++|+.|.+. ++|+||.|.....++|..++|-|...+..+.. ...+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 99999999998878888887777765544332 334445
Q ss_pred HHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHH
Q 014198 115 ASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKT 194 (429)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~ 194 (429)
++.+..+.|.. .+. +++-...|.+.+..+..... ..+ -..+.-.-..++++
T Consensus 88 ~~~~ai~~Li~-~Gv--~FDr~~~g~~~lt~EggHS~----------rRI----------------lH~~~~TG~~I~~~ 138 (518)
T COG0029 88 EAPEAIEWLID-LGV--PFDRDEDGRLHLTREGGHSR----------RRI----------------LHAADATGKEIMTA 138 (518)
T ss_pred hHHHHHHHHHH-cCC--CCcCCCCCceeeeeecccCC----------ceE----------------EEecCCccHHHHHH
Confidence 55555555443 344 22222223233322221100 000 00011233678889
Q ss_pred HHHHHHhhcCcEEEEce-EEEEEEccCC-cEEEEEEeCC----eEEEcCEEEEcCCCCchHHH
Q 014198 195 LLNKAVNDYGLEVVIGK-VERVGVGEGG-RVESVMIEGG----RVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 195 l~~~~~~~~Gv~v~~~~-v~~i~~~~~g-~v~~v~~~~g----~~i~ad~vV~a~G~~s~~~~ 251 (429)
|.+.+++..++++++++ +.++..+ ++ .+.+|.+.+. ..+.++.||+|||+.+....
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~-~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIE-DGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhc-CCceEeEEEEecCCCeEEEEecCeEEEecCCCccccc
Confidence 99999445899999999 9999887 55 5558877543 57889999999998765544
No 160
>PTZ00058 glutathione reductase; Provisional
Probab=99.25 E-value=3.5e-11 Score=118.34 Aligned_cols=129 Identities=19% Similarity=0.332 Sum_probs=88.9
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..| ||.+. +++...+ +. . ....+|+|||+|.+|+++|..|++.|.+|+
T Consensus 205 ~lVIATGS~P~~P~IpG~~~-v~ts~~~-----~~----------l----~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vt 264 (561)
T PTZ00058 205 NILIAVGNKPIFPDVKGKEF-TISSDDF-----FK----------I----KEAKRIGIAGSGYIAVELINVVNRLGAESY 264 (561)
T ss_pred EEEEecCCCCCCCCCCCcee-EEEHHHH-----hh----------c----cCCCEEEEECCcHHHHHHHHHHHHcCCcEE
Confidence 5899999999876 55432 2222221 00 0 114689999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
|+++.+ .+...+..
T Consensus 265 li~~~~-------------------------------~il~~~d~----------------------------------- 278 (561)
T PTZ00058 265 IFARGN-------------------------------RLLRKFDE----------------------------------- 278 (561)
T ss_pred EEEecc-------------------------------cccccCCH-----------------------------------
Confidence 999876 11111111
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC-CeEEEcCE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG-GRVVESDA 238 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-g~~i~ad~ 238 (429)
.+.+.+.+.+ ++.|++++.++ |.+++.++++.+. +...+ +.++.+|.
T Consensus 279 -----------------------------~i~~~l~~~L-~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~ 327 (561)
T PTZ00058 279 -----------------------------TIINELENDM-KKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDY 327 (561)
T ss_pred -----------------------------HHHHHHHHHH-HHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCE
Confidence 1222566677 77899999999 9999865333333 33323 45799999
Q ss_pred EEEcCCCCch
Q 014198 239 VVLALGPWSG 248 (429)
Q Consensus 239 vV~a~G~~s~ 248 (429)
||+|+|...+
T Consensus 328 VlvA~Gr~Pn 337 (561)
T PTZ00058 328 VIYCVGRSPN 337 (561)
T ss_pred EEECcCCCCC
Confidence 9999996554
No 161
>PRK06116 glutathione reductase; Validated
Probab=99.25 E-value=3.7e-11 Score=116.79 Aligned_cols=131 Identities=23% Similarity=0.320 Sum_probs=91.9
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..| ||... +.+...... +. ....+|+|||+|.+|+.+|..|++.|.+|+
T Consensus 134 ~lViATGs~p~~p~i~g~~~-~~~~~~~~~---~~---------------~~~~~vvViGgG~~g~E~A~~l~~~g~~Vt 194 (450)
T PRK06116 134 HILIATGGRPSIPDIPGAEY-GITSDGFFA---LE---------------ELPKRVAVVGAGYIAVEFAGVLNGLGSETH 194 (450)
T ss_pred EEEEecCCCCCCCCCCCcce-eEchhHhhC---cc---------------ccCCeEEEECCCHHHHHHHHHHHHcCCeEE
Confidence 5899999999876 45432 222221100 00 224689999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
++++.+. ++..+.
T Consensus 195 lv~~~~~-------------------------------~l~~~~------------------------------------ 207 (450)
T PRK06116 195 LFVRGDA-------------------------------PLRGFD------------------------------------ 207 (450)
T ss_pred EEecCCC-------------------------------CccccC------------------------------------
Confidence 9998761 000000
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAV 239 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~v 239 (429)
..+.+.+.+.+ ++.|++++.++ |++++.++++.+ .+.+.+|.++.+|.|
T Consensus 208 ----------------------------~~~~~~l~~~L-~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~V 257 (450)
T PRK06116 208 ----------------------------PDIRETLVEEM-EKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCL 257 (450)
T ss_pred ----------------------------HHHHHHHHHHH-HHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEE
Confidence 11222666777 78899999999 999987634433 466667888999999
Q ss_pred EEcCCCCchH
Q 014198 240 VLALGPWSGK 249 (429)
Q Consensus 240 V~a~G~~s~~ 249 (429)
|+|+|...+.
T Consensus 258 v~a~G~~p~~ 267 (450)
T PRK06116 258 IWAIGREPNT 267 (450)
T ss_pred EEeeCCCcCC
Confidence 9999976543
No 162
>PRK06370 mercuric reductase; Validated
Probab=99.24 E-value=3.8e-11 Score=117.09 Aligned_cols=66 Identities=24% Similarity=0.448 Sum_probs=48.8
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||.... +++..++... . ....+|+|||+|.+|+++|..|++.|.+|
T Consensus 136 ~lViATGs~p~~p~i~G~~~~~~~~~~~~~~~---------------~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~V 197 (463)
T PRK06370 136 RIFINTGARAAIPPIPGLDEVGYLTNETIFSL---------------D---ELPEHLVIIGGGYIGLEFAQMFRRFGSEV 197 (463)
T ss_pred EEEEcCCCCCCCCCCCCCCcCceEcchHhhCc---------------c---ccCCEEEEECCCHHHHHHHHHHHHcCCeE
Confidence 6899999999877 454322 2232221100 0 22468999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+|+++.+
T Consensus 198 tli~~~~ 204 (463)
T PRK06370 198 TVIERGP 204 (463)
T ss_pred EEEEcCC
Confidence 9999986
No 163
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.24 E-value=3.7e-11 Score=117.20 Aligned_cols=131 Identities=24% Similarity=0.422 Sum_probs=90.5
Q ss_pred ccccCCCCCCCccCcceEE--EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYLPGLRLT--LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..+||.+.. +++.... +. .. ....+|+|||+|.+|+++|..|++.|.+|+
T Consensus 138 ~lViATGs~p~~~pg~~~~~~v~~~~~~-----~~----------~~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vt 199 (466)
T PRK07818 138 NAIIATGSSTRLLPGTSLSENVVTYEEQ-----IL----------SR---ELPKSIVIAGAGAIGMEFAYVLKNYGVDVT 199 (466)
T ss_pred EEEEeCCCCCCCCCCCCCCCcEEchHHH-----hc----------cc---cCCCeEEEECCcHHHHHHHHHHHHcCCeEE
Confidence 5899999999888875421 3332211 00 00 123589999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
|+|+.+ .++..+.
T Consensus 200 lv~~~~-------------------------------~~l~~~d------------------------------------ 212 (466)
T PRK07818 200 IVEFLD-------------------------------RALPNED------------------------------------ 212 (466)
T ss_pred EEecCC-------------------------------CcCCccC------------------------------------
Confidence 999876 1111110
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe--CC--eEEE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE--GG--RVVE 235 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~--~g--~~i~ 235 (429)
..+...+.+.+ ++.|++++.++ |+++..+ ++.+ .+.+. +| .++.
T Consensus 213 ----------------------------~~~~~~l~~~l-~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~ 261 (466)
T PRK07818 213 ----------------------------AEVSKEIAKQY-KKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELE 261 (466)
T ss_pred ----------------------------HHHHHHHHHHH-HHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEE
Confidence 11222666777 77899999999 9999865 4433 23333 45 4799
Q ss_pred cCEEEEcCCCCchH
Q 014198 236 SDAVVLALGPWSGK 249 (429)
Q Consensus 236 ad~vV~a~G~~s~~ 249 (429)
+|.||+|+|...+.
T Consensus 262 ~D~vi~a~G~~pn~ 275 (466)
T PRK07818 262 ADKVLQAIGFAPRV 275 (466)
T ss_pred eCEEEECcCcccCC
Confidence 99999999976553
No 164
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.24 E-value=4.4e-11 Score=116.28 Aligned_cols=131 Identities=27% Similarity=0.471 Sum_probs=90.3
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHH---CCC
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAK---KGA 77 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~---~G~ 77 (429)
.+||||||+|..| ||... +++..+. +. .. ....+++|||||.+|+++|..++. .|.
T Consensus 154 ~lIIATGs~p~~p~i~G~~~-~~~~~~~-----~~----------~~---~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~ 214 (486)
T TIGR01423 154 HILLATGSWPQMLGIPGIEH-CISSNEA-----FY----------LD---EPPRRVLTVGGGFISVEFAGIFNAYKPRGG 214 (486)
T ss_pred EEEEecCCCCCCCCCCChhh-eechhhh-----hc----------cc---cCCCeEEEECCCHHHHHHHHHHHHhccCCC
Confidence 5899999999876 45432 2222211 00 00 124589999999999999987655 499
Q ss_pred cEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcc
Q 014198 78 AVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSN 157 (429)
Q Consensus 78 ~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (429)
+|+|+|+.+ .+...+..
T Consensus 215 ~Vtli~~~~-------------------------------~il~~~d~-------------------------------- 231 (486)
T TIGR01423 215 KVTLCYRNN-------------------------------MILRGFDS-------------------------------- 231 (486)
T ss_pred eEEEEecCC-------------------------------ccccccCH--------------------------------
Confidence 999999887 11111111
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEc
Q 014198 158 KANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVES 236 (429)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~a 236 (429)
.+.+.+.+.+ ++.|+++++++ |+++..++++ ...+.+.++.++.+
T Consensus 232 --------------------------------~~~~~l~~~L-~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~ 277 (486)
T TIGR01423 232 --------------------------------TLRKELTKQL-RANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDV 277 (486)
T ss_pred --------------------------------HHHHHHHHHH-HHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEc
Confidence 2223677777 78899999999 9999865233 23456666778999
Q ss_pred CEEEEcCCCCchH
Q 014198 237 DAVVLALGPWSGK 249 (429)
Q Consensus 237 d~vV~a~G~~s~~ 249 (429)
|.||+|+|...+.
T Consensus 278 D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 278 DVVMMAIGRVPRT 290 (486)
T ss_pred CEEEEeeCCCcCc
Confidence 9999999966554
No 165
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.23 E-value=3.6e-11 Score=117.10 Aligned_cols=66 Identities=32% Similarity=0.524 Sum_probs=48.4
Q ss_pred ccccCCCCCCCccCcceEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..+||..+. +++... .+. .. ....+|+|||+|.+|+++|..|++.|.+|
T Consensus 139 ~lVIATGs~p~~ipg~~~~~~~~~~~~~-----~~~----------~~---~~~~~vvIIGgG~ig~E~A~~l~~~G~~V 200 (466)
T PRK06115 139 DIVIATGSEPTPLPGVTIDNQRIIDSTG-----ALS----------LP---EVPKHLVVIGAGVIGLELGSVWRRLGAQV 200 (466)
T ss_pred EEEEeCCCCCCCCCCCCCCCCeEECHHH-----HhC----------Cc---cCCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 5899999999877775421 111111 100 00 23468999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+|+|+.+
T Consensus 201 tlie~~~ 207 (466)
T PRK06115 201 TVVEYLD 207 (466)
T ss_pred EEEeCCC
Confidence 9999876
No 166
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.23 E-value=4.2e-11 Score=116.98 Aligned_cols=132 Identities=23% Similarity=0.351 Sum_probs=90.7
Q ss_pred ccccCCCCCCCccCcc-eEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 014198 3 ATLLAPSSAPTYLPGL-RLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAA 78 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~ 78 (429)
.+|||||++|..+|.. ... +++..+.. . .. ....+|+|||||.+|+++|..|++.|.+
T Consensus 134 ~lVlAtG~~p~~~~~~~~~~~~~~~~~~~~~---~------------~~---~~~~~vvViGgG~~g~e~A~~l~~~g~~ 195 (461)
T TIGR01350 134 NIIIATGSRPRSLPGPFDFDGEVVITSTGAL---N------------LK---EVPESLVIIGGGVIGIEFASIFASLGSK 195 (461)
T ss_pred EEEEcCCCCCCCCCCCCCCCCceEEcchHHh---c------------cc---cCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 5899999999877653 211 22211110 0 00 2245899999999999999999999999
Q ss_pred EEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 79 VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 79 V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
|+|+|+.+. ++..+.
T Consensus 196 Vtli~~~~~-------------------------------~l~~~~---------------------------------- 210 (461)
T TIGR01350 196 VTVIEMLDR-------------------------------ILPGED---------------------------------- 210 (461)
T ss_pred EEEEEcCCC-------------------------------CCCCCC----------------------------------
Confidence 999999861 000000
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC--eEEE
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG--RVVE 235 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g--~~i~ 235 (429)
..+.+.+.+.+ ++.|++++.++ |++++.+ ++.+. +.+.++ .++.
T Consensus 211 ------------------------------~~~~~~~~~~l-~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~i~ 257 (461)
T TIGR01350 211 ------------------------------AEVSKVVAKAL-KKKGVKILTNTKVTAVEKN-DDQVV-YENKGGETETLT 257 (461)
T ss_pred ------------------------------HHHHHHHHHHH-HHcCCEEEeCCEEEEEEEe-CCEEE-EEEeCCcEEEEE
Confidence 11222566667 77899999999 9999876 45443 555555 4799
Q ss_pred cCEEEEcCCCCchHH
Q 014198 236 SDAVVLALGPWSGKF 250 (429)
Q Consensus 236 ad~vV~a~G~~s~~~ 250 (429)
+|.||+|+|..++..
T Consensus 258 ~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 258 GEKVLVAVGRKPNTE 272 (461)
T ss_pred eCEEEEecCCcccCC
Confidence 999999999766543
No 167
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.22 E-value=3.5e-11 Score=116.54 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=88.3
Q ss_pred ccccCCCCCCCcc--Ccce-EE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 014198 3 ATLLAPSSAPTYL--PGLR-LT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAA 78 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~ 78 (429)
.+|||||++|..| ||.. .. +++...+.. . . ....+|+|||||.+|+++|..|++.|.+
T Consensus 121 ~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~------~---------~---~~~~~vvIIGgG~~g~e~A~~l~~~g~~ 182 (438)
T PRK07251 121 TIVINTGAVSNVLPIPGLADSKHVYDSTGIQS------L---------E---TLPERLGIIGGGNIGLEFAGLYNKLGSK 182 (438)
T ss_pred EEEEeCCCCCCCCCCCCcCCCCcEEchHHHhc------c---------h---hcCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 5899999999876 5642 11 222222110 0 0 2235899999999999999999999999
Q ss_pred EEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 79 VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 79 V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
|+|+++.+. ++....
T Consensus 183 Vtli~~~~~-------------------------------~l~~~~---------------------------------- 197 (438)
T PRK07251 183 VTVLDAAST-------------------------------ILPREE---------------------------------- 197 (438)
T ss_pred EEEEecCCc-------------------------------cCCCCC----------------------------------
Confidence 999999861 000000
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcC
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESD 237 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad 237 (429)
..+...+.+.+ ++.|++++.++ |++++.+ ++.+. +. .++.++.+|
T Consensus 198 ------------------------------~~~~~~~~~~l-~~~GI~i~~~~~V~~i~~~-~~~v~-v~-~~g~~i~~D 243 (438)
T PRK07251 198 ------------------------------PSVAALAKQYM-EEDGITFLLNAHTTEVKND-GDQVL-VV-TEDETYRFD 243 (438)
T ss_pred ------------------------------HHHHHHHHHHH-HHcCCEEEcCCEEEEEEec-CCEEE-EE-ECCeEEEcC
Confidence 01112455566 77899999999 9999865 44432 33 356789999
Q ss_pred EEEEcCCCCch
Q 014198 238 AVVLALGPWSG 248 (429)
Q Consensus 238 ~vV~a~G~~s~ 248 (429)
.||+|+|...+
T Consensus 244 ~viva~G~~p~ 254 (438)
T PRK07251 244 ALLYATGRKPN 254 (438)
T ss_pred EEEEeeCCCCC
Confidence 99999997665
No 168
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.22 E-value=4.3e-11 Score=116.52 Aligned_cols=132 Identities=23% Similarity=0.312 Sum_probs=92.0
Q ss_pred ccccCCCCCCCccCcceE---EEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRL---TLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..+|+... .+++...+.... ....+++|||+|.+|+++|..|++.|.+|
T Consensus 142 ~lViATGs~p~~~p~~~~~~~~v~~~~~~~~~~------------------~~~~~vvVIGgG~ig~E~A~~l~~~g~~V 203 (466)
T PRK07845 142 VVLIATGASPRILPTAEPDGERILTWRQLYDLD------------------ELPEHLIVVGSGVTGAEFASAYTELGVKV 203 (466)
T ss_pred EEEEcCCCCCCCCCCCCCCCceEEeehhhhccc------------------ccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 589999999987765321 133333221100 12358999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+++++.+. +...+.
T Consensus 204 tli~~~~~-------------------------------~l~~~d----------------------------------- 217 (466)
T PRK07845 204 TLVSSRDR-------------------------------VLPGED----------------------------------- 217 (466)
T ss_pred EEEEcCCc-------------------------------CCCCCC-----------------------------------
Confidence 99998761 100000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDA 238 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~ 238 (429)
..+...+.+.+ ++.|++++.++ |++++.+ ++.+ .+.+.++.++.+|.
T Consensus 218 -----------------------------~~~~~~l~~~L-~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~l~~D~ 265 (466)
T PRK07845 218 -----------------------------ADAAEVLEEVF-ARRGMTVLKRSRAESVERT-GDGV-VVTLTDGRTVEGSH 265 (466)
T ss_pred -----------------------------HHHHHHHHHHH-HHCCcEEEcCCEEEEEEEe-CCEE-EEEECCCcEEEecE
Confidence 01122566666 77899999999 9999865 4443 35666778899999
Q ss_pred EEEcCCCCchHH
Q 014198 239 VVLALGPWSGKF 250 (429)
Q Consensus 239 vV~a~G~~s~~~ 250 (429)
||+|+|...+.-
T Consensus 266 vl~a~G~~pn~~ 277 (466)
T PRK07845 266 ALMAVGSVPNTA 277 (466)
T ss_pred EEEeecCCcCCC
Confidence 999999766543
No 169
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.22 E-value=6.1e-11 Score=114.95 Aligned_cols=130 Identities=23% Similarity=0.302 Sum_probs=90.1
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..| ||... .++..+. +. . . ....+++|||+|.+|+++|..|++.|.+|+
T Consensus 133 ~lIiATGs~p~~p~i~G~~~-~~~~~~~-----~~-l---------~---~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vt 193 (446)
T TIGR01424 133 KILIAVGGRPQKPNLPGHEL-GITSNEA-----FH-L---------P---TLPKSILILGGGYIAVEFAGIWRGLGVQVT 193 (446)
T ss_pred EEEEecCCcCCCCCCCCccc-eechHHh-----hc-c---------c---ccCCeEEEECCcHHHHHHHHHHHHcCCeEE
Confidence 5899999999876 55432 1121111 00 0 0 124589999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
++++.+. ++..+.
T Consensus 194 li~~~~~-------------------------------~l~~~d------------------------------------ 206 (446)
T TIGR01424 194 LIYRGEL-------------------------------ILRGFD------------------------------------ 206 (446)
T ss_pred EEEeCCC-------------------------------CCcccC------------------------------------
Confidence 9998761 111000
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAV 239 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~v 239 (429)
..+...+.+.+ ++.|++++.++ |+++..+ ++.+ .+.+.++.++.+|.|
T Consensus 207 ----------------------------~~~~~~l~~~l-~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~v 255 (446)
T TIGR01424 207 ----------------------------DDMRALLARNM-EGRGIRIHPQTSLTSITKT-DDGL-KVTLSHGEEIVADVV 255 (446)
T ss_pred ----------------------------HHHHHHHHHHH-HHCCCEEEeCCEEEEEEEc-CCeE-EEEEcCCcEeecCEE
Confidence 11222566666 77899999999 9999865 3332 356667778999999
Q ss_pred EEcCCCCchH
Q 014198 240 VLALGPWSGK 249 (429)
Q Consensus 240 V~a~G~~s~~ 249 (429)
|+|+|...+.
T Consensus 256 iva~G~~pn~ 265 (446)
T TIGR01424 256 LFATGRSPNT 265 (446)
T ss_pred EEeeCCCcCC
Confidence 9999976553
No 170
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.22 E-value=1.4e-09 Score=92.70 Aligned_cols=303 Identities=18% Similarity=0.162 Sum_probs=143.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc-ccccccC-CeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC-AASGKAG-GFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~-~~s~~~~-g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.+|+|||+||+|+++|+.|+++|++|+|+||+. .++ -+|.+.. |.+..+.++-+...++..+..+.|.+ -+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~----~glV 77 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRD----DGLV 77 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHh----CCce
Confidence 369999999999999999999999999999998 443 4454332 23333333333333344433333332 1110
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
..| .-..+.+....... .....+|+-.. ... +|.+.+ . ...+|.++
T Consensus 78 ~~W---~~~~~~~~~~~~~~---------~~d~~pyvg~p----------------gms----alak~L-A-tdL~V~~~ 123 (331)
T COG3380 78 DVW---TPAVWTFTGDGSPP---------RGDEDPYVGEP----------------GMS----ALAKFL-A-TDLTVVLE 123 (331)
T ss_pred eec---cccccccccCCCCC---------CCCCCccccCc----------------chH----HHHHHH-h-ccchhhhh
Confidence 000 00000000000000 00000111111 112 555544 2 36789999
Q ss_pred e-EEEEEEccCCcEEEEEEeCC-eEEEcCEEEEcCCC-CchHHH-hhhccccc-----------ccceeeEEEecCCCCC
Q 014198 211 K-VERVGVGEGGRVESVMIEGG-RVVESDAVVLALGP-WSGKFE-LLASMFRV-----------SGLKAHSIILEPKEAD 275 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~~g-~~i~ad~vV~a~G~-~s~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~ 275 (429)
+ |+++... ++ .|.++++++ +...+|.||+|.-+ .+..++ .....+|. .|.-.-++.++.+.+.
T Consensus 124 ~rVt~v~~~-~~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~ 201 (331)
T COG3380 124 TRVTEVART-DN-DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDR 201 (331)
T ss_pred hhhhhheec-CC-eeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCC
Confidence 9 9999987 44 367888655 56789999999863 333333 11111111 1111111222212211
Q ss_pred CCCCceeEeeeccCCCCCCCCCCCc-eEe--cCCCcEEEeccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcc-ccCc-
Q 014198 276 AITPHALFLSYYPAQGEGGKPMDPE-VYP--RPTGEVYLCGMSSEQEVPDDPETVSGDPASIQVLKRVARTVSS-HLGE- 350 (429)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~g~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p-~l~~- 350 (429)
++.. .+.+ +......... .-+ .+++.++++-.+.... .... -..+++.++.+...+..+++ .+.+
T Consensus 202 P~~G--~~vd-----g~~laWla~d~sK~g~~p~~~~~vvqasp~wS--r~h~-~~~~e~~i~~l~aA~~~~~~~~~~~p 271 (331)
T COG3380 202 PWPG--NFVD-----GHPLAWLARDASKKGHVPDGEIWVVQASPDWS--REHL-DHPAEQVIVALRAAAQELDGDRLPEP 271 (331)
T ss_pred CCCC--cccC-----CCeeeeeeccccCCCCCCcCceEEEEeCchHH--HHhh-cCCHHHHHHHHHHhhhhccCCCCCcc
Confidence 2222 1111 0000000000 000 1334455444333221 0111 23456677888888888776 4443
Q ss_pred ccccceeeeeecccCCCCCceeccCCCCCcEEEEecCCCcc-chhhHHHHHHHHHHHh
Q 014198 351 EAQVKAEQACFLPCTDDGVPVIGELPGIKGCYVGTGHNCWG-ILNGPATGAALAELVM 407 (429)
Q Consensus 351 ~~~~~~~~~g~r~~t~d~~p~ig~~~~~~~~~~~~G~~~~G-~~~a~~~a~~la~~i~ 407 (429)
.....+.|...+|.-+-..|.++-.++ -++|.|.-..+.| ..-|.+.|-.+++.|+
T Consensus 272 ~~s~~H~WrYA~P~~~~~~~~L~ad~~-~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~ 328 (331)
T COG3380 272 DWSDAHRWRYAIPNDAVAGPPLDADRE-LPLYACGDWCAGGRVEGAVLSGLAAADHIL 328 (331)
T ss_pred hHHHhhccccccccccccCCccccCCC-CceeeecccccCcchhHHHhccHHHHHHHH
Confidence 244567787777765545555553331 5566664433222 3445556666666664
No 171
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.21 E-value=6.1e-11 Score=115.34 Aligned_cols=66 Identities=27% Similarity=0.446 Sum_probs=47.3
Q ss_pred ccccCCCCCCCccCcceE--E-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRL--T-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..+|.... . +++..... .+. ....+++|||||.+|+++|..|++.|.+|
T Consensus 135 ~lviATGs~p~~~p~~~~~~~~v~~~~~~~---~~~---------------~~~~~vvIIGgG~iG~E~A~~l~~~g~~V 196 (458)
T PRK06912 135 QFIIAAGSEPTELPFAPFDGKWIINSKHAM---SLP---------------SIPSSLLIVGGGVIGCEFASIYSRLGTKV 196 (458)
T ss_pred EEEEeCCCCCCCCCCCCCCCCeEEcchHHh---Ccc---------------ccCCcEEEECCCHHHHHHHHHHHHcCCeE
Confidence 589999999987653221 1 22221110 000 22458999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+|+++.+
T Consensus 197 tli~~~~ 203 (458)
T PRK06912 197 TIVEMAP 203 (458)
T ss_pred EEEecCC
Confidence 9999876
No 172
>PLN02507 glutathione reductase
Probab=99.21 E-value=6.2e-11 Score=115.98 Aligned_cols=130 Identities=22% Similarity=0.300 Sum_probs=90.8
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..| ||... ..+..+.. .+ . ....+|+|||+|.+|+.+|..|++.|.+|+
T Consensus 170 ~LIIATGs~p~~p~ipG~~~-~~~~~~~~---~l------------~---~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vt 230 (499)
T PLN02507 170 HILIATGSRAQRPNIPGKEL-AITSDEAL---SL------------E---ELPKRAVVLGGGYIAVEFASIWRGMGATVD 230 (499)
T ss_pred EEEEecCCCCCCCCCCCccc-eechHHhh---hh------------h---hcCCeEEEECCcHHHHHHHHHHHHcCCeEE
Confidence 5899999999876 55432 11221110 00 0 123589999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
|+++.+. .+..+.
T Consensus 231 li~~~~~-------------------------------~l~~~d------------------------------------ 243 (499)
T PLN02507 231 LFFRKEL-------------------------------PLRGFD------------------------------------ 243 (499)
T ss_pred EEEecCC-------------------------------cCcccC------------------------------------
Confidence 9998761 111010
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAV 239 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~v 239 (429)
..+.+.+.+.+ ++.|++++.++ |++++.+ ++.+ .+.+.++.++.+|.|
T Consensus 244 ----------------------------~~~~~~l~~~l-~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~v 292 (499)
T PLN02507 244 ----------------------------DEMRAVVARNL-EGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVV 292 (499)
T ss_pred ----------------------------HHHHHHHHHHH-HhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEE
Confidence 11222566667 77899999999 9999865 4433 356667778999999
Q ss_pred EEcCCCCchH
Q 014198 240 VLALGPWSGK 249 (429)
Q Consensus 240 V~a~G~~s~~ 249 (429)
++|+|...+.
T Consensus 293 l~a~G~~pn~ 302 (499)
T PLN02507 293 LFATGRAPNT 302 (499)
T ss_pred EEeecCCCCC
Confidence 9999976654
No 173
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.20 E-value=4.1e-11 Score=115.78 Aligned_cols=135 Identities=16% Similarity=0.256 Sum_probs=90.3
Q ss_pred ccccCCCCCCCccCcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 014198 3 ATLLAPSSAPTYLPGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLI 82 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~li 82 (429)
.+||||||+|..|+-....+++.+++.+...+.... .. ....+++|||||.+|+.+|..|++.|.+|+|+
T Consensus 108 ~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l-------~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli 177 (438)
T PRK13512 108 KLILSPGASANSLGFESDITFTLRNLEDTDAIDQFI-------KA---NQVDKALVVGAGYISLEVLENLYERGLHPTLI 177 (438)
T ss_pred EEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHH-------hh---cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 589999999987652111133333332221111000 00 12358999999999999999999999999999
Q ss_pred cCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCC
Q 014198 83 EKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSL 162 (429)
Q Consensus 83 e~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (429)
++.+ .+...+.+
T Consensus 178 ~~~~-------------------------------~l~~~~d~------------------------------------- 189 (438)
T PRK13512 178 HRSD-------------------------------KINKLMDA------------------------------------- 189 (438)
T ss_pred eccc-------------------------------ccchhcCH-------------------------------------
Confidence 9876 11111111
Q ss_pred CCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEE
Q 014198 163 IPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVL 241 (429)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~ 241 (429)
.+.+.+.+.+ ++.|++++.++ |++++. . .+++.++..+.+|.||+
T Consensus 190 ---------------------------~~~~~l~~~l-~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~ 235 (438)
T PRK13512 190 ---------------------------DMNQPILDEL-DKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIE 235 (438)
T ss_pred ---------------------------HHHHHHHHHH-HhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEE
Confidence 1222566777 78899999999 999962 2 25566777899999999
Q ss_pred cCCCCchH
Q 014198 242 ALGPWSGK 249 (429)
Q Consensus 242 a~G~~s~~ 249 (429)
|+|...+.
T Consensus 236 a~G~~pn~ 243 (438)
T PRK13512 236 GVGTHPNS 243 (438)
T ss_pred CcCCCcCh
Confidence 99976654
No 174
>PRK07846 mycothione reductase; Reviewed
Probab=99.20 E-value=5.3e-11 Score=115.25 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=47.7
Q ss_pred ccccCCCCCCCccC--cceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLP--GLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~--g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..|| |.... +.+..++. .+. ....+++|||||.+|+++|..|++.|.+|
T Consensus 131 ~lViATGs~p~~p~i~g~~~~~~~~~~~~~---~l~---------------~~~~~vvIIGgG~iG~E~A~~l~~~G~~V 192 (451)
T PRK07846 131 QVVIAAGSRPVIPPVIADSGVRYHTSDTIM---RLP---------------ELPESLVIVGGGFIAAEFAHVFSALGVRV 192 (451)
T ss_pred EEEEcCCCCCCCCCCCCcCCccEEchHHHh---hhh---------------hcCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 58999999998774 42211 22222110 000 12458999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+|+++.+
T Consensus 193 tli~~~~ 199 (451)
T PRK07846 193 TVVNRSG 199 (451)
T ss_pred EEEEcCC
Confidence 9999976
No 175
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.20 E-value=7.5e-11 Score=115.08 Aligned_cols=66 Identities=33% Similarity=0.548 Sum_probs=48.0
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||.... +++.... +. .. ....+++|||+|.+|+++|..|++.|.+|
T Consensus 131 ~lIiATGs~p~~p~i~G~~~~~~~~~~~~-----~~----------~~---~~~~~vvIIGgG~~g~E~A~~l~~~g~~V 192 (463)
T TIGR02053 131 RFLIATGARPAIPPIPGLKEAGYLTSEEA-----LA----------LD---RIPESLAVIGGGAIGVELAQAFARLGSEV 192 (463)
T ss_pred EEEEcCCCCCCCCCCCCcccCceECchhh-----hC----------cc---cCCCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence 5899999999876 554321 2222111 00 00 12368999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+|+++.+
T Consensus 193 tli~~~~ 199 (463)
T TIGR02053 193 TILQRSD 199 (463)
T ss_pred EEEEcCC
Confidence 9999986
No 176
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.19 E-value=1.2e-10 Score=112.51 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEcc-CCcEEEEEEeC-CeEEEcCEEEEcCCCCchHHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGE-GGRVESVMIEG-GRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~-~g~v~~v~~~~-g~~i~ad~vV~a~G~~s~~~~ 251 (429)
..+++.|.+.+ ++.|++|++++ |++|..++ ++++.+|.+.+ +..+.|+.||+|+|.+..+..
T Consensus 123 ~~l~~~L~~~a-~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 123 KALTNALYSSA-ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred HHHHHHHHHHH-HHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHH
Confidence 56888999999 88999999999 99998763 46777776643 358999999999998887654
No 177
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.19 E-value=8.8e-10 Score=106.34 Aligned_cols=60 Identities=23% Similarity=0.220 Sum_probs=45.2
Q ss_pred ehHHHHHHHHHHHHhhcCcE--EEEce-EEEEEEccCCcEEEEEEeCC----eEEEcCEEEEcCCCCchH
Q 014198 187 HPQLFTKTLLNKAVNDYGLE--VVIGK-VERVGVGEGGRVESVMIEGG----RVVESDAVVLALGPWSGK 249 (429)
Q Consensus 187 ~~~~l~~~l~~~~~~~~Gv~--v~~~~-v~~i~~~~~g~v~~v~~~~g----~~i~ad~vV~a~G~~s~~ 249 (429)
...++.++|.+.+ +..|++ |.+++ |+++... +++ +.|++.++ .+..+|.||+|+|.++..
T Consensus 109 ~~~ev~~YL~~~a-~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P 175 (461)
T PLN02172 109 SHREVLAYLQDFA-REFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFDAVVVCNGHYTEP 175 (461)
T ss_pred CHHHHHHHHHHHH-HHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcCEEEEeccCCCCC
Confidence 3467888888888 888887 89999 9999876 554 45666532 145789999999987543
No 178
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.18 E-value=5.8e-11 Score=85.51 Aligned_cols=32 Identities=53% Similarity=0.715 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|+|||||++|+.+|..|++.|.+|+|+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 48999999999999999999999999999998
No 179
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.18 E-value=2.1e-10 Score=105.59 Aligned_cols=112 Identities=19% Similarity=0.280 Sum_probs=78.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNY 133 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (429)
+||+|||||++|+++|..|++.|++|+|+|+.++++. +... . .+ ....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~--------~~~~---------------~---~~-~~~~----- 48 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ--------LTTT---------------T---EV-ENYP----- 48 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc--------eeec---------------c---cc-cccC-----
Confidence 5899999999999999999999999999998873311 1000 0 00 0000
Q ss_pred CeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-E
Q 014198 134 GYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-V 212 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v 212 (429)
.....+.+..+...+.+.+ ++.|++++. + |
T Consensus 49 -----------------------------------------------~~~~~~~~~~~~~~l~~~~-~~~gv~~~~-~~v 79 (300)
T TIGR01292 49 -----------------------------------------------GFPEGISGPELMEKMKEQA-VKFGAEIIY-EEV 79 (300)
T ss_pred -----------------------------------------------CCCCCCChHHHHHHHHHHH-HHcCCeEEE-EEE
Confidence 0000122345666788888 778999999 6 9
Q ss_pred EEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 213 ERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 213 ~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
++++.+ +.. +.+.+.++.++++|.+|+|+|.+..
T Consensus 80 ~~v~~~-~~~-~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 80 IKVDLS-DRP-FKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred EEEEec-CCe-eEEEeCCCCEEEeCEEEECCCCCcc
Confidence 999876 443 3466666778999999999998654
No 180
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.18 E-value=7.1e-09 Score=102.45 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
..+.+.|.+.+ ++.|++|++++ |++|..+ ++++++|++.+++++.||.||+|++....
T Consensus 219 ~~l~~al~~~~-~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~ 277 (502)
T TIGR02734 219 GALVAAMAKLA-EDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHT 277 (502)
T ss_pred HHHHHHHHHHH-HHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHH
Confidence 57888999999 88899999999 9999987 67778898888888999999999996443
No 181
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.18 E-value=1.1e-10 Score=114.07 Aligned_cols=131 Identities=24% Similarity=0.433 Sum_probs=89.4
Q ss_pred ccccCCCCCCCccCcceEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..+|+.... +++.... +. .. ....+|+|||+|.+|+++|..|++.|.+|
T Consensus 148 ~lViATGs~p~~~p~~~~~~~~~~~~~~~-----~~----------~~---~~~~~vvVvGgG~~g~E~A~~l~~~g~~V 209 (475)
T PRK06327 148 HVIIATGSEPRHLPGVPFDNKIILDNTGA-----LN----------FT---EVPKKLAVIGAGVIGLELGSVWRRLGAEV 209 (475)
T ss_pred EEEEeCCCCCCCCCCCCCCCceEECcHHH-----hc----------cc---ccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 5899999999877765321 1111111 00 00 22358999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+|+++.+. +...+
T Consensus 210 tli~~~~~-------------------------------~l~~~------------------------------------ 222 (475)
T PRK06327 210 TILEALPA-------------------------------FLAAA------------------------------------ 222 (475)
T ss_pred EEEeCCCc-------------------------------cCCcC------------------------------------
Confidence 99999761 00000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC--C--eEE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG--G--RVV 234 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~--g--~~i 234 (429)
...+...+.+.+ ++.|++++.++ |++++.+ ++.+ .+.+.+ + .++
T Consensus 223 ----------------------------d~~~~~~~~~~l-~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~~~g~~~~i 271 (475)
T PRK06327 223 ----------------------------DEQVAKEAAKAF-TKQGLDIHLGVKIGEIKTG-GKGV-SVAYTDADGEAQTL 271 (475)
T ss_pred ----------------------------CHHHHHHHHHHH-HHcCcEEEeCcEEEEEEEc-CCEE-EEEEEeCCCceeEE
Confidence 012223566667 77899999999 9999876 4443 344433 2 479
Q ss_pred EcCEEEEcCCCCchH
Q 014198 235 ESDAVVLALGPWSGK 249 (429)
Q Consensus 235 ~ad~vV~a~G~~s~~ 249 (429)
.+|.||+|+|...+.
T Consensus 272 ~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 272 EVDKLIVSIGRVPNT 286 (475)
T ss_pred EcCEEEEccCCccCC
Confidence 999999999976654
No 182
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.17 E-value=1.6e-11 Score=113.77 Aligned_cols=147 Identities=22% Similarity=0.293 Sum_probs=98.4
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCC-CCCCcEEEECCCHHHHHHHHHHHHCC---
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQR-HSKKHVAVCGGGIIGVCTAYFLAKKG--- 76 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dvvIIGaGi~Gl~~A~~L~~~G--- 76 (429)
.||||+||.+..+ ||.....+..+++.+...+..............+. ....+++|||||+.|.++|.+|+++-
T Consensus 102 ~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l 181 (405)
T COG1252 102 YLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRL 181 (405)
T ss_pred EEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHH
Confidence 4899999999886 88654444455544443222111000000000000 12347999999999999999998631
Q ss_pred ----------CcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeec
Q 014198 77 ----------AAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVT 146 (429)
Q Consensus 77 ----------~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (429)
.+|+|||+.+ .+++.+.++
T Consensus 182 ~~~~~~~~~~~~V~LVea~p-------------------------------~ILp~~~~~-------------------- 210 (405)
T COG1252 182 LKKFRVDPSELRVILVEAGP-------------------------------RILPMFPPK-------------------- 210 (405)
T ss_pred hhhhcCCccccEEEEEccCc-------------------------------hhccCCCHH--------------------
Confidence 3899999988 444333332
Q ss_pred ccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEE
Q 014198 147 ESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVES 225 (429)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~ 225 (429)
+.++..+.+ ++.||+|+.++ |++++.+ +
T Consensus 211 --------------------------------------------l~~~a~~~L-~~~GV~v~l~~~Vt~v~~~------~ 239 (405)
T COG1252 211 --------------------------------------------LSKYAERAL-EKLGVEVLLGTPVTEVTPD------G 239 (405)
T ss_pred --------------------------------------------HHHHHHHHH-HHCCCEEEcCCceEEECCC------c
Confidence 233666677 88999999999 9999854 3
Q ss_pred EEEeCCe-EEEcCEEEEcCCCCchHHH
Q 014198 226 VMIEGGR-VVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 226 v~~~~g~-~i~ad~vV~a~G~~s~~~~ 251 (429)
|++.+++ +|.++.+|.|+|...+.+.
T Consensus 240 v~~~~g~~~I~~~tvvWaaGv~a~~~~ 266 (405)
T COG1252 240 VTLKDGEEEIPADTVVWAAGVRASPLL 266 (405)
T ss_pred EEEccCCeeEecCEEEEcCCCcCChhh
Confidence 6777776 5999999999999888887
No 183
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.16 E-value=1.2e-10 Score=112.44 Aligned_cols=137 Identities=24% Similarity=0.403 Sum_probs=91.3
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
++|||||++|..+ ||.... +++.+.+.+...+.... . .....+|+|||+|.+|+.+|..|++.|.+|
T Consensus 94 ~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l--------~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~V 163 (427)
T TIGR03385 94 YLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI--------D--KNKVENVVIIGGGYIGIEMAEALRERGKNV 163 (427)
T ss_pred EEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHH--------h--hcCCCeEEEECCCHHHHHHHHHHHhCCCcE
Confidence 5899999999876 564322 33333322111110000 0 012358999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHH-HHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLH-RSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
+++++.+. ++ ..+.
T Consensus 164 tli~~~~~-------------------------------~~~~~~~---------------------------------- 178 (427)
T TIGR03385 164 TLIHRSER-------------------------------ILNKLFD---------------------------------- 178 (427)
T ss_pred EEEECCcc-------------------------------cCccccC----------------------------------
Confidence 99998761 10 0000
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcC
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESD 237 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad 237 (429)
..+...+.+.+ ++.|++++.++ |+++..+ +.+ +.+.+++++.+|
T Consensus 179 ------------------------------~~~~~~~~~~l-~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D 223 (427)
T TIGR03385 179 ------------------------------EEMNQIVEEEL-KKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQAD 223 (427)
T ss_pred ------------------------------HHHHHHHHHHH-HHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeC
Confidence 11222566667 78899999999 9999754 333 445577889999
Q ss_pred EEEEcCCCCchH
Q 014198 238 AVVLALGPWSGK 249 (429)
Q Consensus 238 ~vV~a~G~~s~~ 249 (429)
.||+|+|...+.
T Consensus 224 ~vi~a~G~~p~~ 235 (427)
T TIGR03385 224 MVILATGIKPNS 235 (427)
T ss_pred EEEECCCccCCH
Confidence 999999987664
No 184
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.16 E-value=1.1e-10 Score=113.15 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=47.8
Q ss_pred ccccCCCCCCCccCcceEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..||+.... +.+..+.. .+. ....+++|||+|.+|+++|..|++.|.+|
T Consensus 134 ~lIiATGs~p~~p~~~~~~~~~~~~~~~~~---~l~---------------~~~k~vvVIGgG~ig~E~A~~l~~~G~~V 195 (452)
T TIGR03452 134 QIVIAAGSRPYIPPAIADSGVRYHTNEDIM---RLP---------------ELPESLVIVGGGYIAAEFAHVFSALGTRV 195 (452)
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEcHHHHH---hhh---------------hcCCcEEEECCCHHHHHHHHHHHhCCCcE
Confidence 5899999999877643211 11221110 000 12458999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+||++.+
T Consensus 196 tli~~~~ 202 (452)
T TIGR03452 196 TIVNRST 202 (452)
T ss_pred EEEEccC
Confidence 9999876
No 185
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.15 E-value=1.7e-10 Score=112.53 Aligned_cols=130 Identities=23% Similarity=0.243 Sum_probs=88.1
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..| ||.....++..++.... ....+++|||||.+|+.+|..|++.|.+|+
T Consensus 146 ~lVIATGs~p~~p~ipG~~~~~~~~~~~~~~~------------------~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vt 207 (484)
T TIGR01438 146 RFLIATGERPRYPGIPGAKELCITSDDLFSLP------------------YCPGKTLVVGASYVALECAGFLAGIGLDVT 207 (484)
T ss_pred EEEEecCCCCCCCCCCCccceeecHHHhhccc------------------ccCCCEEEECCCHHHHHHHHHHHHhCCcEE
Confidence 5899999999876 55422222222221100 123479999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
|+++..+. +.+..
T Consensus 208 li~~~~~l--------------------------------~~~d~----------------------------------- 220 (484)
T TIGR01438 208 VMVRSILL--------------------------------RGFDQ----------------------------------- 220 (484)
T ss_pred EEEecccc--------------------------------cccCH-----------------------------------
Confidence 99874311 10111
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC---eEEEc
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG---RVVES 236 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g---~~i~a 236 (429)
.+...+.+.+ ++.|+++++++ ++++... ++.+ .++..++ .++.+
T Consensus 221 -----------------------------~~~~~l~~~L-~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~ 268 (484)
T TIGR01438 221 -----------------------------DCANKVGEHM-EEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEY 268 (484)
T ss_pred -----------------------------HHHHHHHHHH-HHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEe
Confidence 1222566667 77899999999 9999875 4433 3554444 37999
Q ss_pred CEEEEcCCCCchH
Q 014198 237 DAVVLALGPWSGK 249 (429)
Q Consensus 237 d~vV~a~G~~s~~ 249 (429)
|.||+|+|...+.
T Consensus 269 D~vl~a~G~~pn~ 281 (484)
T TIGR01438 269 DTVLLAIGRDACT 281 (484)
T ss_pred CEEEEEecCCcCC
Confidence 9999999975554
No 186
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.15 E-value=4.2e-11 Score=115.61 Aligned_cols=140 Identities=28% Similarity=0.443 Sum_probs=107.8
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.|||||||.|+.+ ||.++. ++.++++.+........ ......+|||||.-|+.+|..|...|..|
T Consensus 104 kLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a------------r~~~~avVIGGGLLGlEaA~~L~~~Gm~~ 171 (793)
T COG1251 104 KLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA------------RNKKKAVVIGGGLLGLEAARGLKDLGMEV 171 (793)
T ss_pred eeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH------------hccCCcEEEccchhhhHHHHHHHhCCCce
Confidence 5899999999986 677665 88888877766544332 33445899999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
++++-.+. -+-+++...-+.
T Consensus 172 ~Vvh~~~~------------------------------lMerQLD~~ag~------------------------------ 191 (793)
T COG1251 172 TVVHIAPT------------------------------LMERQLDRTAGR------------------------------ 191 (793)
T ss_pred EEEeecch------------------------------HHHHhhhhHHHH------------------------------
Confidence 99988761 122333332222
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDA 238 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~ 238 (429)
.|.+.+ .+.|++++++. .+++.. ++++.+++++||..+.||.
T Consensus 192 ----------------------------------lL~~~l-e~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~ 234 (793)
T COG1251 192 ----------------------------------LLRRKL-EDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADL 234 (793)
T ss_pred ----------------------------------HHHHHH-Hhhcceeecccchhhhhc--CcceeeEeecCCCccccee
Confidence 455555 88899999999 777765 5677889999999999999
Q ss_pred EEEcCCCCchHHH
Q 014198 239 VVLALGPWSGKFE 251 (429)
Q Consensus 239 vV~a~G~~s~~~~ 251 (429)
||+|+|...+.-+
T Consensus 235 VV~a~GIrPn~el 247 (793)
T COG1251 235 VVMAVGIRPNDEL 247 (793)
T ss_pred EEEecccccccHh
Confidence 9999998776555
No 187
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.15 E-value=8.3e-10 Score=109.60 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEccC--CcEEEEEEe---CCe--EEEcCEEEEcCCCCch
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGEG--GRVESVMIE---GGR--VVESDAVVLALGPWSG 248 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~--g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~ 248 (429)
.+.+.+...+ .+.++++++++ ++++..+++ |+|.+|... +++ .+.|+.||+|||+++.
T Consensus 127 ~~~r~l~~~l-~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 SYKPIVAEAA-KNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hHHHHHHHHH-HhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 4444555555 56678999999 999997632 788888752 343 5789999999999875
No 188
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.14 E-value=3.3e-09 Score=109.18 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=42.4
Q ss_pred eEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 185 QVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 185 ~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.++...|.+.|.+.+ .+.|+++++++ |+++... ..++|.||.|+|.+|....
T Consensus 93 ~i~R~~L~~~L~e~a-~~~GV~i~~g~~v~~i~~~--------------~~~~D~VVgADG~~S~vR~ 145 (765)
T PRK08255 93 GIGRKRLLNILQARC-EELGVKLVFETEVPDDQAL--------------AADADLVIASDGLNSRIRT 145 (765)
T ss_pred cCCHHHHHHHHHHHH-HHcCCEEEeCCccCchhhh--------------hcCCCEEEEcCCCCHHHHH
Confidence 467889999999999 88899999999 8776421 1478999999999987654
No 189
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.14 E-value=3.1e-09 Score=99.43 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=54.2
Q ss_pred ehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC--eEEEcCEEEEcCCCC-chHHH
Q 014198 187 HPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG--RVVESDAVVLALGPW-SGKFE 251 (429)
Q Consensus 187 ~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g--~~i~ad~vV~a~G~~-s~~~~ 251 (429)
-..++.+.|.+.+ ++.|++++.++ |+++..+ ++++..|.+.++ ..++||.||+|+|+| |..+.
T Consensus 261 ~G~RL~~aL~~~~-~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 261 LGIRLEEALKHRF-EQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred cHHHHHHHHHHHH-HHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 3367889999999 88999999998 9999887 777877877665 489999999999999 88886
No 190
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.14 E-value=8.7e-10 Score=105.08 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCc
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s 247 (429)
...+.+.|.+.+ ++.|+++++++ |+++..+ ++. +.+++ ++..+.+|.||+|+|.++
T Consensus 104 a~~v~~~L~~~l-~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNEL-KELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHH-HHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCCCcc
Confidence 357788899998 88899999999 9999775 443 45666 466899999999999876
No 191
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.14 E-value=1.5e-10 Score=115.58 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=48.6
Q ss_pred ccccCCCCCCCccCcceEE---EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRLT---LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..|++.... +++..+... +. ....+|+|||||.+|+++|..|++.|.+|
T Consensus 277 ~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~---l~---------------~lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 277 NIIIATGSTPNIPDNIEVDQKSVFTSDTAVK---LE---------------GLQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred EEEEcCCCCCCCCCCCCCCCCcEEehHHhhh---hh---------------hcCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 5899999999887644321 333222111 00 12358999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+|||+.+
T Consensus 339 TLIe~~~ 345 (659)
T PTZ00153 339 VSFEYSP 345 (659)
T ss_pred EEEeccC
Confidence 9999987
No 192
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.14 E-value=1.9e-10 Score=111.58 Aligned_cols=130 Identities=23% Similarity=0.372 Sum_probs=89.5
Q ss_pred ccccCCCCCCCcc--CcceE-E-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCc
Q 014198 3 ATLLAPSSAPTYL--PGLRL-T-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAA 78 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~ 78 (429)
.+|||||++|..| ||... . +++...+.. .. ....+|+|||+|.+|+.+|..|++.|.+
T Consensus 122 ~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~---------------~~---~~~~~v~ViGgG~~g~E~A~~l~~~g~~ 183 (441)
T PRK08010 122 KIFINTGAQTVVPPIPGITTTPGVYDSTGLLN---------------LK---ELPGHLGILGGGYIGVEFASMFANFGSK 183 (441)
T ss_pred EEEEcCCCcCCCCCCCCccCCCCEEChhHhhc---------------cc---ccCCeEEEECCCHHHHHHHHHHHHCCCe
Confidence 5899999999876 45421 1 222211100 00 1235899999999999999999999999
Q ss_pred EEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 79 VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 79 V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
|+|+++.+. +...+.
T Consensus 184 Vtli~~~~~-------------------------------~l~~~~---------------------------------- 198 (441)
T PRK08010 184 VTILEAASL-------------------------------FLPRED---------------------------------- 198 (441)
T ss_pred EEEEecCCC-------------------------------CCCCcC----------------------------------
Confidence 999999761 000000
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcC
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESD 237 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad 237 (429)
..+.+.+.+.+ ++.|+++++++ |++++.+ ++.+ .+.+.+ .++.+|
T Consensus 199 ------------------------------~~~~~~l~~~l-~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~-g~i~~D 244 (441)
T PRK08010 199 ------------------------------RDIADNIATIL-RDQGVDIILNAHVERISHH-ENQV-QVHSEH-AQLAVD 244 (441)
T ss_pred ------------------------------HHHHHHHHHHH-HhCCCEEEeCCEEEEEEEc-CCEE-EEEEcC-CeEEeC
Confidence 11223666777 78899999999 9999876 4443 345444 468999
Q ss_pred EEEEcCCCCchH
Q 014198 238 AVVLALGPWSGK 249 (429)
Q Consensus 238 ~vV~a~G~~s~~ 249 (429)
.||+|+|..++.
T Consensus 245 ~vl~a~G~~pn~ 256 (441)
T PRK08010 245 ALLIASGRQPAT 256 (441)
T ss_pred EEEEeecCCcCC
Confidence 999999987765
No 193
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.5e-10 Score=101.65 Aligned_cols=117 Identities=23% Similarity=0.370 Sum_probs=84.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~-V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
+.+||+|||||++|+++|.++++++.+ ++|+|+..+++..+ .+. +..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~--------------------------~~~----~ve-- 49 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLT--------------------------KTT----DVE-- 49 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccc--------------------------cce----eec--
Confidence 368999999999999999999999998 77777765431000 000 000
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
++....+.+....+++.+.+++ ...|+++...
T Consensus 50 -----------------------------------------------nypg~~~~~~g~~L~~~~~~~a-~~~~~~~~~~ 81 (305)
T COG0492 50 -----------------------------------------------NYPGFPGGILGPELMEQMKEQA-EKFGVEIVED 81 (305)
T ss_pred -----------------------------------------------CCCCCccCCchHHHHHHHHHHH-hhcCeEEEEE
Confidence 1112223355677888888888 7889999995
Q ss_pred eEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 211 KVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 211 ~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.|.+++.. +. ...|.++++. ++|+.||+|||.....+.
T Consensus 82 ~v~~v~~~-~~-~F~v~t~~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 82 EVEKVELE-GG-PFKVKTDKGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEEeec-Cc-eEEEEECCCe-EEEeEEEECcCCcccCCC
Confidence 58888876 32 5668887775 999999999998776654
No 194
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.13 E-value=2.5e-10 Score=111.06 Aligned_cols=137 Identities=17% Similarity=0.277 Sum_probs=91.2
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||.... +++.+.+.+...+.... . .....+|+|||||.+|+.+|..|++.|.+|
T Consensus 106 ~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l--------~--~~~~~~vvVvGgG~~g~e~A~~l~~~g~~V 175 (444)
T PRK09564 106 KLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELL--------K--DEEIKNIVIIGAGFIGLEAVEAAKHLGKNV 175 (444)
T ss_pred EEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHH--------h--hcCCCEEEEECCCHHHHHHHHHHHhcCCcE
Confidence 5899999999876 554322 33333221111111000 0 012468999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHH-HHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRS-LAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNK 158 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
+++++.+ .++.. +
T Consensus 176 tli~~~~-------------------------------~~l~~~~----------------------------------- 189 (444)
T PRK09564 176 RIIQLED-------------------------------RILPDSF----------------------------------- 189 (444)
T ss_pred EEEeCCc-------------------------------ccCchhc-----------------------------------
Confidence 9999876 11100 0
Q ss_pred cCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcC
Q 014198 159 ANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESD 237 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad 237 (429)
...+.+.+.+.+ ++.|++++.++ |+++.. ++.+..+.+. +.++.+|
T Consensus 190 -----------------------------~~~~~~~l~~~l-~~~gI~v~~~~~v~~i~~--~~~~~~v~~~-~~~i~~d 236 (444)
T PRK09564 190 -----------------------------DKEITDVMEEEL-RENGVELHLNEFVKSLIG--EDKVEGVVTD-KGEYEAD 236 (444)
T ss_pred -----------------------------CHHHHHHHHHHH-HHCCCEEEcCCEEEEEec--CCcEEEEEeC-CCEEEcC
Confidence 012333667777 78899999999 999964 3444455554 5579999
Q ss_pred EEEEcCCCCch
Q 014198 238 AVVLALGPWSG 248 (429)
Q Consensus 238 ~vV~a~G~~s~ 248 (429)
.||+|+|...+
T Consensus 237 ~vi~a~G~~p~ 247 (444)
T PRK09564 237 VVIVATGVKPN 247 (444)
T ss_pred EEEECcCCCcC
Confidence 99999998765
No 195
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.12 E-value=1.8e-10 Score=112.32 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=47.3
Q ss_pred ccccCCCCCCCccCcceE---EEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYLPGLRL---TLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+||||||+|..+|+... .+++..+... + . ....+++|||||.+|+++|..|++.|.+|
T Consensus 139 ~lViATGs~p~~~p~~~~~~~~v~~~~~~~~---~------------~---~~~~~vvIiGgG~iG~E~A~~l~~~G~~V 200 (471)
T PRK06467 139 NAIIAAGSRPIQLPFIPHDDPRIWDSTDALE---L------------K---EVPKRLLVMGGGIIGLEMGTVYHRLGSEV 200 (471)
T ss_pred EEEEeCCCCCCCCCCCCCCCCcEEChHHhhc---c------------c---cCCCeEEEECCCHHHHHHHHHHHHcCCCE
Confidence 589999999986553321 1222211100 0 0 22358999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+|||+.+
T Consensus 201 tlv~~~~ 207 (471)
T PRK06467 201 DVVEMFD 207 (471)
T ss_pred EEEecCC
Confidence 9999887
No 196
>PLN02546 glutathione reductase
Probab=99.12 E-value=2.7e-10 Score=112.12 Aligned_cols=132 Identities=20% Similarity=0.247 Sum_probs=89.7
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++|..| ||... +++.... +. . . ....+|+|||||.+|+.+|..|++.|.+|+
T Consensus 219 ~LVIATGs~p~~P~IpG~~~-v~~~~~~-----l~-~---------~---~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vt 279 (558)
T PLN02546 219 NILIAVGGRPFIPDIPGIEH-AIDSDAA-----LD-L---------P---SKPEKIAIVGGGYIALEFAGIFNGLKSDVH 279 (558)
T ss_pred EEEEeCCCCCCCCCCCChhh-ccCHHHH-----Hh-c---------c---ccCCeEEEECCCHHHHHHHHHHHhcCCeEE
Confidence 5899999999876 55432 2222111 00 0 0 124589999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
|+++.+ .++..+..+
T Consensus 280 lv~~~~-------------------------------~il~~~d~~---------------------------------- 294 (558)
T PLN02546 280 VFIRQK-------------------------------KVLRGFDEE---------------------------------- 294 (558)
T ss_pred EEEecc-------------------------------ccccccCHH----------------------------------
Confidence 999876 111111111
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAV 239 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~v 239 (429)
+...+.+.+ ++.|++++.++ ++++..++++.+ .+.+.++....+|.|
T Consensus 295 ------------------------------~~~~l~~~L-~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~V 342 (558)
T PLN02546 295 ------------------------------VRDFVAEQM-SLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHV 342 (558)
T ss_pred ------------------------------HHHHHHHHH-HHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEE
Confidence 122566777 77899999999 999986534433 355544444458999
Q ss_pred EEcCCCCchHH
Q 014198 240 VLALGPWSGKF 250 (429)
Q Consensus 240 V~a~G~~s~~~ 250 (429)
|+|+|...+.-
T Consensus 343 iva~G~~Pnt~ 353 (558)
T PLN02546 343 MFATGRKPNTK 353 (558)
T ss_pred EEeeccccCCC
Confidence 99999776653
No 197
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.12 E-value=1.1e-09 Score=107.18 Aligned_cols=161 Identities=22% Similarity=0.210 Sum_probs=100.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCC-----c-----------------
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGG-----P----------------- 108 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~-----~----------------- 108 (429)
..++||||||||.+|+.+|..+++.|.+|+|+||..+..++|..+.|.++....... .
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 457899999999999999999999999999999999666888777777776543221 1
Q ss_pred ---chhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCC--CCCCCccCc----
Q 014198 109 ---LSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGP--ARSPTTIGS---- 179 (429)
Q Consensus 109 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~---- 179 (429)
+..++..+.+....|.+. +. .+.... ......+|.
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~-G~-----------------------------------~f~r~~~G~~~~r~fgg~~~~ 127 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKW-GV-----------------------------------PFSRTEDGRIYQRRFGGHSKP 127 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHh-CC-----------------------------------CcccCCCccccccccCCcCCC
Confidence 111122222222222111 11 110000 001111111
Q ss_pred -cccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CC--eEEEcCEEEEcCCCCc
Q 014198 180 -TQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GG--RVVESDAVVLALGPWS 247 (429)
Q Consensus 180 -~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g--~~i~ad~vV~a~G~~s 247 (429)
....+.-....++..|.+++.+..+++++.+. ++++..++++.+.++..- ++ ..+.++.||+|||+..
T Consensus 128 rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 128 RTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred cceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 11222233467888999999444778999999 999987634446565443 33 3577899999999887
No 198
>PRK07233 hypothetical protein; Provisional
Probab=99.12 E-value=5.7e-08 Score=94.35 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCC
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPW 246 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~ 246 (429)
..+.+.|.+.+ ++.|++|++++ |++|+.+ ++++..+. .+++.+++|.||+|+...
T Consensus 198 ~~l~~~l~~~l-~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAI-EARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHH-HhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence 46888898888 78899999999 9999987 55555444 466789999999999864
No 199
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.12 E-value=2.4e-09 Score=112.11 Aligned_cols=38 Identities=39% Similarity=0.502 Sum_probs=35.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVA 88 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~ 88 (429)
..++||+|||+|.+|+++|+.+++.|.+|+||||...+
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~ 48 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVR 48 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 45789999999999999999999999999999999853
No 200
>PRK14727 putative mercuric reductase; Provisional
Probab=99.11 E-value=3.9e-10 Score=110.27 Aligned_cols=130 Identities=21% Similarity=0.267 Sum_probs=88.6
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||.... .++.. ..+. .. ....+++|||+|.+|+.+|..|++.|.+|
T Consensus 153 ~lViATGs~p~~p~i~G~~~~~~~~~~-----~~l~----------~~---~~~k~vvVIGgG~iG~E~A~~l~~~G~~V 214 (479)
T PRK14727 153 RCLIATGSTPTIPPIPGLMDTPYWTST-----EALF----------SD---ELPASLTVIGSSVVAAEIAQAYARLGSRV 214 (479)
T ss_pred EEEEecCCCCCCCCCCCcCccceecch-----HHhc----------cc---cCCCeEEEECCCHHHHHHHHHHHHcCCEE
Confidence 5899999999877 454211 11111 1110 00 12368999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+|+++..+. ..+..
T Consensus 215 tlv~~~~~l--------------------------------~~~d~---------------------------------- 228 (479)
T PRK14727 215 TILARSTLL--------------------------------FREDP---------------------------------- 228 (479)
T ss_pred EEEEcCCCC--------------------------------CcchH----------------------------------
Confidence 999875410 00000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDA 238 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~ 238 (429)
.+.+.+.+.+ ++.|+++++++ |+++..+ ++.+ .+.+.+ .++.+|.
T Consensus 229 ------------------------------~~~~~l~~~L-~~~GV~i~~~~~V~~i~~~-~~~~-~v~~~~-g~i~aD~ 274 (479)
T PRK14727 229 ------------------------------LLGETLTACF-EKEGIEVLNNTQASLVEHD-DNGF-VLTTGH-GELRAEK 274 (479)
T ss_pred ------------------------------HHHHHHHHHH-HhCCCEEEcCcEEEEEEEe-CCEE-EEEEcC-CeEEeCE
Confidence 1222666777 78899999999 9999865 4433 345544 4689999
Q ss_pred EEEcCCCCchHH
Q 014198 239 VVLALGPWSGKF 250 (429)
Q Consensus 239 vV~a~G~~s~~~ 250 (429)
||+|+|...+.-
T Consensus 275 VlvA~G~~pn~~ 286 (479)
T PRK14727 275 LLISTGRHANTH 286 (479)
T ss_pred EEEccCCCCCcc
Confidence 999999887654
No 201
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.10 E-value=3.5e-10 Score=110.80 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=89.7
Q ss_pred ccccCCCCCCCcc---CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL---PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||.....++..++ +. .. ....+++|||+|.+|+.+|..|++.|.+|
T Consensus 147 ~lIIATGs~p~~p~~i~G~~~~~~~~~~~-----~~-~~------------~~~~~vvIIGgG~iG~E~A~~l~~~G~~V 208 (499)
T PTZ00052 147 YILIATGGRPSIPEDVPGAKEYSITSDDI-----FS-LS------------KDPGKTLIVGASYIGLETAGFLNELGFDV 208 (499)
T ss_pred EEEEecCCCCCCCCCCCCccceeecHHHH-----hh-hh------------cCCCeEEEECCCHHHHHHHHHHHHcCCcE
Confidence 5899999999865 4543222222221 10 00 12348999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+|+++..+. ..+..
T Consensus 209 tli~~~~~l--------------------------------~~~d~---------------------------------- 222 (499)
T PTZ00052 209 TVAVRSIPL--------------------------------RGFDR---------------------------------- 222 (499)
T ss_pred EEEEcCccc--------------------------------ccCCH----------------------------------
Confidence 999874310 00000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDA 238 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~ 238 (429)
.+.+.+.+.+ ++.|++++.++ ++++... ++.+ .+.+.++.++.+|.
T Consensus 223 ------------------------------~~~~~l~~~l-~~~GV~i~~~~~v~~v~~~-~~~~-~v~~~~g~~i~~D~ 269 (499)
T PTZ00052 223 ------------------------------QCSEKVVEYM-KEQGTLFLEGVVPINIEKM-DDKI-KVLFSDGTTELFDT 269 (499)
T ss_pred ------------------------------HHHHHHHHHH-HHcCCEEEcCCeEEEEEEc-CCeE-EEEECCCCEEEcCE
Confidence 1122566777 77899999999 9999865 3333 35666777899999
Q ss_pred EEEcCCCCchH
Q 014198 239 VVLALGPWSGK 249 (429)
Q Consensus 239 vV~a~G~~s~~ 249 (429)
||+|+|..++.
T Consensus 270 vl~a~G~~pn~ 280 (499)
T PTZ00052 270 VLYATGRKPDI 280 (499)
T ss_pred EEEeeCCCCCc
Confidence 99999976654
No 202
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.09 E-value=1.2e-09 Score=98.44 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=101.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC------CCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK------GAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA 124 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~------G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (429)
...+||+|||||++|+++|..|.+. .++|+|+||....++.+ -++..+.+ ..+.++.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght-lSGaviep----------------~aldEL~ 136 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT-LSGAVIEP----------------GALDELL 136 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce-ecceeecc----------------chhhhhC
Confidence 3578999999999999999999763 46899999998433332 23344444 2233332
Q ss_pred HHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCC--CCccC-ccccceeEehHHHHHHHHHHHHh
Q 014198 125 EELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARS--PTTIG-STQTTAQVHPQLFTKTLLNKAVN 201 (429)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g-~~~~~~~~~~~~l~~~l~~~~~~ 201 (429)
.+...+..-..... ....+.++...... +.... -....+.+.-.+++++|-+++ +
T Consensus 137 P~wke~~apl~t~v---------------------T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kA-E 194 (621)
T KOG2415|consen 137 PDWKEDGAPLNTPV---------------------TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKA-E 194 (621)
T ss_pred cchhhcCCcccccc---------------------cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHH-H
Confidence 22111000000000 11122222222111 01001 123467788899999999999 9
Q ss_pred hcCcEEEEce-EEEEEEccCCcEEEEEEeC---------------CeEEEcCEEEEcCCCCch
Q 014198 202 DYGLEVVIGK-VERVGVGEGGRVESVMIEG---------------GRVVESDAVVLALGPWSG 248 (429)
Q Consensus 202 ~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~---------------g~~i~ad~vV~a~G~~s~ 248 (429)
+.||+|+.+. +.++..+++|.|.++.|.| |..+.|+..|.|-|-...
T Consensus 195 e~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 195 ELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred hhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence 9999999999 9999988899999998864 236889999999885543
No 203
>PRK14694 putative mercuric reductase; Provisional
Probab=99.08 E-value=4.2e-10 Score=109.80 Aligned_cols=130 Identities=18% Similarity=0.279 Sum_probs=88.6
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||.... +.+.... .. .. ....+++|||+|.+|+.+|..|++.|.+|
T Consensus 143 ~lViATGs~p~~p~i~G~~~~~~~~~~~~---~~------------l~---~~~~~vvViG~G~~G~E~A~~l~~~g~~V 204 (468)
T PRK14694 143 RAFIGTGARPAEPPVPGLAETPYLTSTSA---LE------------LD---HIPERLLVIGASVVALELAQAFARLGSRV 204 (468)
T ss_pred EEEEeCCCCCCCCCCCCCCCCceEcchhh---hc------------hh---cCCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 5899999999877 454321 1111110 00 00 12358999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+++++..+.. .+
T Consensus 205 tlv~~~~~l~--------------------------------~~------------------------------------ 216 (468)
T PRK14694 205 TVLARSRVLS--------------------------------QE------------------------------------ 216 (468)
T ss_pred EEEECCCCCC--------------------------------CC------------------------------------
Confidence 9998754110 00
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDA 238 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~ 238 (429)
...+...+.+.+ ++.|++++.++ |++++.+ ++.+ .+.+. +.++.+|.
T Consensus 217 ----------------------------~~~~~~~l~~~l-~~~GI~v~~~~~v~~i~~~-~~~~-~v~~~-~~~i~~D~ 264 (468)
T PRK14694 217 ----------------------------DPAVGEAIEAAF-RREGIEVLKQTQASEVDYN-GREF-ILETN-AGTLRAEQ 264 (468)
T ss_pred ----------------------------CHHHHHHHHHHH-HhCCCEEEeCCEEEEEEEc-CCEE-EEEEC-CCEEEeCE
Confidence 011222566777 77899999999 9999865 4432 35553 45799999
Q ss_pred EEEcCCCCchHH
Q 014198 239 VVLALGPWSGKF 250 (429)
Q Consensus 239 vV~a~G~~s~~~ 250 (429)
||+|+|..++.-
T Consensus 265 vi~a~G~~pn~~ 276 (468)
T PRK14694 265 LLVATGRTPNTE 276 (468)
T ss_pred EEEccCCCCCcC
Confidence 999999877654
No 204
>PLN02612 phytoene desaturase
Probab=99.07 E-value=5.2e-08 Score=96.95 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
..+++.|.+.+ ++.|++|++++ |++|..++++.+.++++.+|+.++||.||+|+.....
T Consensus 308 ~~l~~~l~~~l-~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l 367 (567)
T PLN02612 308 ERLCMPIVDHF-QSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDIL 367 (567)
T ss_pred HHHHHHHHHHH-HhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHH
Confidence 46778888888 77899999999 9999986567677788878888999999999976443
No 205
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.07 E-value=2.3e-10 Score=110.11 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 194 TLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 194 ~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.+.+.+ ++.|++++.++ |+++..+ .|.+++|+++.+|.+|.|+|...+.+.
T Consensus 233 ~~~~~L-~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~~~~ 284 (424)
T PTZ00318 233 YGQRRL-RRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPGPLT 284 (424)
T ss_pred HHHHHH-HHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCcchh
Confidence 566777 78899999999 9999632 256778889999999999997666543
No 206
>PRK13748 putative mercuric reductase; Provisional
Probab=99.05 E-value=8.9e-10 Score=110.33 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=88.3
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.+|||||++|..| ||.... +++.. ..+. .. ....+++|||+|.+|+.+|..|++.|.+|
T Consensus 235 ~lviAtGs~p~~p~i~g~~~~~~~~~~-----~~~~----------~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~V 296 (561)
T PRK13748 235 RCLIATGASPAVPPIPGLKETPYWTST-----EALV----------SD---TIPERLAVIGSSVVALELAQAFARLGSKV 296 (561)
T ss_pred EEEEcCCCCCCCCCCCCCCccceEccH-----HHhh----------cc---cCCCeEEEECCCHHHHHHHHHHHHcCCEE
Confidence 5899999999876 454321 11111 1110 00 22458999999999999999999999999
Q ss_pred EEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 80 TLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 80 ~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
+||++..+. ..+..
T Consensus 297 tli~~~~~l--------------------------------~~~d~---------------------------------- 310 (561)
T PRK13748 297 TILARSTLF--------------------------------FREDP---------------------------------- 310 (561)
T ss_pred EEEecCccc--------------------------------cccCH----------------------------------
Confidence 999985410 00000
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCE
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDA 238 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~ 238 (429)
.+.+.+.+.+ ++.|+++++++ |+++..+ ++.+ .+.+.+ .++.+|.
T Consensus 311 ------------------------------~~~~~l~~~l-~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~-~~i~~D~ 356 (561)
T PRK13748 311 ------------------------------AIGEAVTAAF-RAEGIEVLEHTQASQVAHV-DGEF-VLTTGH-GELRADK 356 (561)
T ss_pred ------------------------------HHHHHHHHHH-HHCCCEEEcCCEEEEEEec-CCEE-EEEecC-CeEEeCE
Confidence 1222566777 77899999999 9999865 4433 355544 4799999
Q ss_pred EEEcCCCCchH
Q 014198 239 VVLALGPWSGK 249 (429)
Q Consensus 239 vV~a~G~~s~~ 249 (429)
||+|+|...+.
T Consensus 357 vi~a~G~~pn~ 367 (561)
T PRK13748 357 LLVATGRAPNT 367 (561)
T ss_pred EEEccCCCcCC
Confidence 99999976664
No 207
>PRK06116 glutathione reductase; Validated
Probab=99.04 E-value=4.2e-09 Score=102.49 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
..+||+|||||++|+++|..|+++|++|+|||+..+|+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG 40 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG 40 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence 46899999999999999999999999999999975443
No 208
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.04 E-value=8.6e-09 Score=100.84 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=34.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVA 88 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~ 88 (429)
...+||+|||||++|+++|..|+++|++|+|||+..+|
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~G 39 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLG 39 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence 45799999999999999999999999999999997553
No 209
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.04 E-value=3e-09 Score=104.96 Aligned_cols=114 Identities=18% Similarity=0.309 Sum_probs=81.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
...+||+|||||++|+++|.+|++.|++|+|+++. +++ .+... ...+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG--------~~~~~------------------------~~~~ 255 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGG--------QVLDT------------------------MGIE 255 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCC--------eeecc------------------------Cccc
Confidence 34689999999999999999999999999999764 221 11000 0000
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
++ .........++.+.+.+.+ ++.|++++.+
T Consensus 256 ---~~---------------------------------------------~~~~~~~~~~l~~~l~~~~-~~~gv~i~~~ 286 (517)
T PRK15317 256 ---NF---------------------------------------------ISVPETEGPKLAAALEEHV-KEYDVDIMNL 286 (517)
T ss_pred ---cc---------------------------------------------CCCCCCCHHHHHHHHHHHH-HHCCCEEEcC
Confidence 00 0000123456777888888 8889999999
Q ss_pred e-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 211 K-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
+ |+++..+ ++. +.|.+.++..+.+|.||+|+|...+
T Consensus 287 ~~V~~I~~~-~~~-~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 287 QRASKLEPA-AGL-IEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred CEEEEEEec-CCe-EEEEECCCCEEEcCEEEECCCCCcC
Confidence 9 9999876 333 4566777778999999999998654
No 210
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.04 E-value=4e-09 Score=102.35 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
++||+|||||++|+++|..++++|++|+|+|+..+|+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG 38 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGG 38 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCc
Confidence 5899999999999999999999999999999965543
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.04 E-value=1.5e-09 Score=107.90 Aligned_cols=115 Identities=17% Similarity=0.297 Sum_probs=77.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
..+||+|||||++|+++|..|+++|++|+|+|++.+++. +.... . ...
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~--------~~~~~--------------~--------i~~-- 50 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQ--------ITITS--------------E--------VVN-- 50 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCce--------EEecc--------------c--------ccc--
Confidence 458999999999999999999999999999999764321 11000 0 000
Q ss_pred CcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce
Q 014198 132 NYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK 211 (429)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~ 211 (429)
++......+..+.+.+.+.+ ++.|++++...
T Consensus 51 ------------------------------------------------~pg~~~~~~~~l~~~l~~~~-~~~gv~~~~~~ 81 (555)
T TIGR03143 51 ------------------------------------------------YPGILNTTGPELMQEMRQQA-QDFGVKFLQAE 81 (555)
T ss_pred ------------------------------------------------CCCCcCCCHHHHHHHHHHHH-HHcCCEEeccE
Confidence 00001123345666787777 77899986433
Q ss_pred EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHH
Q 014198 212 VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 212 v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~ 250 (429)
|+++..+ + ....|.+.++ .+.++.||+|||++...+
T Consensus 82 V~~i~~~-~-~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 82 VLDVDFD-G-DIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEEec-C-CEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 8888865 3 3344666544 689999999999976543
No 212
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.02 E-value=7.1e-09 Score=102.02 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGK 249 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~ 249 (429)
..+++.|.+.+ ++.|++|++++ |++|..+ ++++.+|++.++++++||.||+|+|++...
T Consensus 229 ~~l~~~L~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 229 GQIAESLVKGL-EKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred HHHHHHHHHHH-HHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 57889999999 88999999999 9999887 678888999888889999999999987654
No 213
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.01 E-value=3.1e-09 Score=102.17 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~-V~lie~~~ 86 (429)
...+||+|||||++|+++|++|.++|.+ ++|+||+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 4578999999999999999999999998 99999997
No 214
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.01 E-value=8.9e-09 Score=100.58 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVA 88 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~ 88 (429)
..+||+|||||++|+++|..|+++|++|+|+|+..+|
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~G 39 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLG 39 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence 4689999999999999999999999999999998743
No 215
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.01 E-value=1.5e-09 Score=104.65 Aligned_cols=141 Identities=26% Similarity=0.334 Sum_probs=98.9
Q ss_pred cccccCCCCCCCccCcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 2 AATLLAPSSAPTYLPGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 2 ~~~~~a~g~~p~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
..++||||++|..+|+.... +.+.+.......+.... ....+++|||+|.+|+++|..|+++|++|+
T Consensus 96 d~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~vvG~G~~gle~A~~~~~~G~~v~ 163 (415)
T COG0446 96 DYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGA------------EPPKDVVVVGAGPIGLEAAEAAAKRGKKVT 163 (415)
T ss_pred cEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHH------------hccCeEEEECCcHHHHHHHHHHHHcCCeEE
Confidence 36899999999988733222 33444433333322111 114799999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHH-HHhCCCCCcCeeeeeeeEEeecccccCCCCCcccc
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLA-EELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKA 159 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
++|+.+ +....+. ..
T Consensus 164 l~e~~~-------------------------------~~~~~~~~~~--------------------------------- 179 (415)
T COG0446 164 LIEAAD-------------------------------RLGGQLLDPE--------------------------------- 179 (415)
T ss_pred EEEccc-------------------------------ccchhhhhHH---------------------------------
Confidence 999988 1112111 11
Q ss_pred CCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEE--EEEeCCeEEEc
Q 014198 160 NSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVES--VMIEGGRVVES 236 (429)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~--v~~~~g~~i~a 236 (429)
+.+.+.+.+ ++.|++++.++ +.+++.. .+.... +...++..+++
T Consensus 180 -------------------------------~~~~~~~~l-~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~ 226 (415)
T COG0446 180 -------------------------------VAEELAELL-EKYGVELLLGTKVVGVEGK-GNTLVVERVVGIDGEEIKA 226 (415)
T ss_pred -------------------------------HHHHHHHHH-HHCCcEEEeCCceEEEEcc-cCcceeeEEEEeCCcEEEe
Confidence 222667777 88899999999 9999976 433332 45667888999
Q ss_pred CEEEEcCCCCchHHH
Q 014198 237 DAVVLALGPWSGKFE 251 (429)
Q Consensus 237 d~vV~a~G~~s~~~~ 251 (429)
|.+++++|...+..+
T Consensus 227 d~~~~~~g~~p~~~l 241 (415)
T COG0446 227 DLVIIGPGERPNVVL 241 (415)
T ss_pred eEEEEeecccccHHH
Confidence 999999998886444
No 216
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.99 E-value=1.1e-08 Score=99.27 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
++||+|||||++|+++|..|++.|++|+|+||+.+|+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG 38 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGG 38 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccccc
Confidence 5899999999999999999999999999999976543
No 217
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.99 E-value=7.4e-09 Score=95.06 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=63.5
Q ss_pred cccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 180 TQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 180 ~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.++-|...-..+++.+.+.+ ++.|++|++++ |++|+.+ ++.+..|.+++|.++.+|.||+|.|..+.+.+
T Consensus 164 ~rHiGTD~l~~vvkni~~~l-~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~ 234 (486)
T COG2509 164 QRHIGTDILPKVVKNIREYL-ESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSGRDWF 234 (486)
T ss_pred ccccCccchHHHHHHHHHHH-HhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcchHHHH
Confidence 46778888899999999999 99999999999 9999988 77677899999999999999999999888887
No 218
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.99 E-value=1.6e-08 Score=98.74 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+..+||+|||||++|+.+|..|++.|++|+|||+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346999999999999999999999999999999875
No 219
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.98 E-value=1.2e-08 Score=99.72 Aligned_cols=33 Identities=33% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEK 84 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~ 84 (429)
..+|++|||||++|+++|..+++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 220
>PRK10262 thioredoxin reductase; Provisional
Probab=98.98 E-value=1.7e-09 Score=100.36 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDN 132 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 132 (429)
..+|+|||+|..|+.+|..|++.|.+|+++++.+... . +
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-~--------------------------~-------------- 184 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-A--------------------------E-------------- 184 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-C--------------------------C--------------
Confidence 4689999999999999999999999999999876100 0 0
Q ss_pred cCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-
Q 014198 133 YGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK- 211 (429)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~- 211 (429)
..+.+.+.+.+ ++.|++++.++
T Consensus 185 --------------------------------------------------------~~~~~~~~~~l-~~~gV~i~~~~~ 207 (321)
T PRK10262 185 --------------------------------------------------------KILIKRLMDKV-ENGNIILHTNRT 207 (321)
T ss_pred --------------------------------------------------------HHHHHHHHhhc-cCCCeEEEeCCE
Confidence 00111455666 77899999999
Q ss_pred EEEEEEccCCcEEEEEEeCC------eEEEcCEEEEcCCCCchHHH
Q 014198 212 VERVGVGEGGRVESVMIEGG------RVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 212 v~~i~~~~~g~v~~v~~~~g------~~i~ad~vV~a~G~~s~~~~ 251 (429)
++++..+ ++.+..|++.++ .++.+|.||+|+|..++..+
T Consensus 208 v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l 252 (321)
T PRK10262 208 LEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAI 252 (321)
T ss_pred EEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhH
Confidence 9999865 444555655432 37999999999998776654
No 221
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.98 E-value=7.3e-09 Score=102.15 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=79.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
...+||+|||||++|+++|..|++.|++|+|++.. +++ .+.. . ..+..+ .+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG--------~~~~----~-----------~~~~~~---~~~- 261 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGG--------QVKD----T-----------VGIENL---ISV- 261 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCC--------cccc----C-----------cCcccc---ccc-
Confidence 44689999999999999999999999999999753 221 0000 0 000000 000
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEc
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIG 210 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~ 210 (429)
......++...+.+.+ ++.|++++.+
T Consensus 262 -----------------------------------------------------~~~~~~~l~~~l~~~l-~~~gv~i~~~ 287 (515)
T TIGR03140 262 -----------------------------------------------------PYTTGSQLAANLEEHI-KQYPIDLMEN 287 (515)
T ss_pred -----------------------------------------------------CCCCHHHHHHHHHHHH-HHhCCeEEcC
Confidence 0012345666788888 7789999999
Q ss_pred e-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 211 K-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 211 ~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
+ |+++..+ ++. ..+.+.++..+.+|.+|+|+|....
T Consensus 288 ~~V~~I~~~-~~~-~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 288 QRAKKIETE-DGL-IVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred CEEEEEEec-CCe-EEEEECCCCEEEeCEEEECCCCCcC
Confidence 9 9999876 433 3466667778999999999998643
No 222
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.97 E-value=5.7e-09 Score=101.09 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=51.0
Q ss_pred cccccCCCC-CCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC
Q 014198 2 AATLLAPSS-APTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA 77 (429)
Q Consensus 2 ~~~~~a~g~-~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~ 77 (429)
-+++||||+ .|..+ ||..+. +++..++........... .+..........+|+|||||.+|+.+|..|++.|.
T Consensus 220 d~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~---~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~ 296 (449)
T TIGR01316 220 DAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYE---FPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGA 296 (449)
T ss_pred CEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhccccc---ccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 368999998 67765 666543 444333211111100000 00000001234689999999999999999999999
Q ss_pred cEEEEcCCC
Q 014198 78 AVTLIEKSS 86 (429)
Q Consensus 78 ~V~lie~~~ 86 (429)
+|+++++..
T Consensus 297 ~Vtlv~~~~ 305 (449)
T TIGR01316 297 EVHCLYRRT 305 (449)
T ss_pred EEEEEeecC
Confidence 999999875
No 223
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.97 E-value=7.8e-09 Score=100.34 Aligned_cols=34 Identities=41% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5899999999999999999999999999999975
No 224
>PRK06370 mercuric reductase; Validated
Probab=98.96 E-value=1.9e-08 Score=98.16 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=36.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAA 91 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~ 91 (429)
..++||+|||||++|+++|..|+++|++|+|||+..+++.+
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c 43 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTC 43 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCce
Confidence 44699999999999999999999999999999998665443
No 225
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.95 E-value=1.9e-09 Score=96.17 Aligned_cols=136 Identities=21% Similarity=0.400 Sum_probs=94.0
Q ss_pred ccccCCCCCCCccCcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 014198 3 ATLLAPSSAPTYLPGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLI 82 (429)
Q Consensus 3 ~~~~a~g~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~li 82 (429)
.+||||||.-+..||...+ ...-++....++ +. ..+.+.+|||||++||+.+.-..+.|.+|++|
T Consensus 176 nIiiATGSeV~~~PGI~ID--ekkIVSStgALs-L~------------~vPk~~~viG~G~IGLE~gsV~~rLGseVT~V 240 (506)
T KOG1335|consen 176 NIIIATGSEVTPFPGITID--EKKIVSSTGALS-LK------------EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVV 240 (506)
T ss_pred eEEEEeCCccCCCCCeEec--CceEEecCCccc-hh------------hCcceEEEEcCceeeeehhhHHHhcCCeEEEE
Confidence 4789999998888887653 111111111111 11 34578999999999999999999999999999
Q ss_pred cCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccCCC
Q 014198 83 EKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKANSL 162 (429)
Q Consensus 83 e~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (429)
|-.+ ++...+..+
T Consensus 241 Ef~~-------------------------------~i~~~mD~E------------------------------------ 253 (506)
T KOG1335|consen 241 EFLD-------------------------------QIGGVMDGE------------------------------------ 253 (506)
T ss_pred Eehh-------------------------------hhccccCHH------------------------------------
Confidence 9876 211111111
Q ss_pred CCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC-----CeEEEc
Q 014198 163 IPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG-----GRVVES 236 (429)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-----g~~i~a 236 (429)
+.+.+.+.+ .++|++|.+++ |+..+.+.||.+ .+...+ ..+++|
T Consensus 254 ----------------------------isk~~qr~L-~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~ 303 (506)
T KOG1335|consen 254 ----------------------------ISKAFQRVL-QKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLEC 303 (506)
T ss_pred ----------------------------HHHHHHHHH-HhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEe
Confidence 222555556 77899999999 999999867654 344432 257899
Q ss_pred CEEEEcCC--CCchHH
Q 014198 237 DAVVLALG--PWSGKF 250 (429)
Q Consensus 237 d~vV~a~G--~~s~~~ 250 (429)
|.+.+|+| +++..+
T Consensus 304 DvlLVsiGRrP~t~GL 319 (506)
T KOG1335|consen 304 DVLLVSIGRRPFTEGL 319 (506)
T ss_pred eEEEEEccCcccccCC
Confidence 99999999 444443
No 226
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.95 E-value=6.5e-08 Score=91.83 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC--eEEEcCEEEEcCCCCchHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG--RVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g--~~i~ad~vV~a~G~~s~~~ 250 (429)
.++.+.|.+.+ ++.|++++.++ |++++.+ ++++..+.+.++ ..+++|.||+|+|.+..+-
T Consensus 259 ~rL~~aL~~~l-~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~G 321 (422)
T PRK05329 259 LRLQNALRRAF-ERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGG 321 (422)
T ss_pred HHHHHHHHHHH-HhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCc
Confidence 45778888888 88899999999 9999987 666665555444 3589999999999865543
No 227
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.95 E-value=1.8e-08 Score=98.45 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
..+||+|||||++|+++|+.|+++|++|+|||+.. +|+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG 42 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccc
Confidence 46899999999999999999999999999999975 543
No 228
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.95 E-value=9.7e-09 Score=99.56 Aligned_cols=34 Identities=35% Similarity=0.363 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
++||+|||||++|+++|..|+++|++|+||||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 5899999999999999999999999999999986
No 229
>PRK07208 hypothetical protein; Provisional
Probab=98.94 E-value=3.8e-07 Score=89.71 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe--CC--eEEEcCEEEEcCCCCc
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE--GG--RVVESDAVVLALGPWS 247 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~--~g--~~i~ad~vV~a~G~~s 247 (429)
..+.+.|.+.+ .+.|++|++++ |++|..++++.+..+... +| ..+.||.||.|+..+.
T Consensus 218 ~~l~~~L~~~l-~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 218 GQLWETAAEKL-EALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE 280 (479)
T ss_pred chHHHHHHHHH-HHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence 46788888888 77899999999 999998744444444432 24 2689999999988653
No 230
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.93 E-value=1e-07 Score=92.39 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEc-cC--CcEEEEEEeC-C--e---EEEcCEEEEcCCCCchHHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVG-EG--GRVESVMIEG-G--R---VVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~-~~--g~v~~v~~~~-g--~---~i~ad~vV~a~G~~s~~~~ 251 (429)
..++..|.+.+ +++||+|++++ |++|..+ ++ ++|.++.+.. | + ....|.||+++|..+.+-.
T Consensus 226 eSLV~PL~~~L-e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~ 297 (576)
T PRK13977 226 ESLVLPLIKYL-EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESST 297 (576)
T ss_pred hHHHHHHHHHH-HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccc
Confidence 67888999999 89999999999 9999874 23 5788887752 2 2 3467999999998887665
No 231
>PLN02507 glutathione reductase
Probab=98.93 E-value=2.7e-08 Score=97.53 Aligned_cols=34 Identities=38% Similarity=0.382 Sum_probs=32.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEK 84 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~ 84 (429)
+.++||+|||||++|+.+|..+++.|++|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3468999999999999999999999999999997
No 232
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.93 E-value=1.8e-09 Score=105.37 Aligned_cols=55 Identities=31% Similarity=0.412 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCC
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGP 245 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~ 245 (429)
..++++|.+.+ ++.|++|++++ |++|..+ +|+..++++.++..+++|.||.+...
T Consensus 224 ~al~~aL~~~~-~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELA-REHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHH-HHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 57999999999 99999999999 9999988 76666677776667899999999887
No 233
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.92 E-value=6.7e-07 Score=87.55 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCC
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGP 245 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~ 245 (429)
.+.+.|.+.+ .+ ++|++++ |++|+.+ ++++ .|.+.++..+.||.||+|+-.
T Consensus 227 ~l~~~l~~~l-~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 227 TIIDRLEEVL-TE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAPH 278 (463)
T ss_pred HHHHHHHHhc-cc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCCH
Confidence 5666666665 33 6899999 9999987 4544 577777778999999999953
No 234
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=3.3e-09 Score=99.38 Aligned_cols=155 Identities=25% Similarity=0.251 Sum_probs=94.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC--Cccccccc-cCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGK-AGGFLALDWCDGGPLSSLARASFNLHRSLAEELN 128 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~--~~~~~s~~-~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (429)
..+||+|||||-+|+++|+..++.|.+++|+.-.. ++ -.|.+ +-|-+.-+.- ..++ ..---......+..+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig-~msCNPaIGG~~KG~l----vrEI-DALGG~Mg~~~D~~~ 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG-EMSCNPAIGGPGKGHL----VREI-DALGGLMGKAADKAG 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee-ecccccccCCccccee----EEee-hhccchHHHhhhhcC
Confidence 45999999999999999999999999999997764 22 22211 1010000000 0000 000011112222222
Q ss_pred CCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEE
Q 014198 129 GPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVV 208 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~ 208 (429)
++ +..++...-+ .....-.+.|...|.+.+.+.+....+..++
T Consensus 77 IQ---------------------------------~r~LN~sKGP----AVra~RaQaDk~~Y~~~mk~~le~~~NL~l~ 119 (621)
T COG0445 77 IQ---------------------------------FRMLNSSKGP----AVRAPRAQADKWLYRRAMKNELENQPNLHLL 119 (621)
T ss_pred Cc---------------------------------hhhccCCCcc----hhcchhhhhhHHHHHHHHHHHHhcCCCceeh
Confidence 21 1111110000 0012335667777888888888667789999
Q ss_pred EceEEEEEEccCC-cEEEEEEeCCeEEEcCEEEEcCCCCchHH
Q 014198 209 IGKVERVGVGEGG-RVESVMIEGGRVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 209 ~~~v~~i~~~~~g-~v~~v~~~~g~~i~ad~vV~a~G~~s~~~ 250 (429)
.+.|+++..+ ++ +|++|.+.+|..+.|+.||++||-+.+..
T Consensus 120 q~~v~dli~e-~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~ 161 (621)
T COG0445 120 QGEVEDLIVE-EGQRVVGVVTADGPEFHAKAVVLTTGTFLRGK 161 (621)
T ss_pred HhhhHHHhhc-CCCeEEEEEeCCCCeeecCEEEEeecccccce
Confidence 8889888876 45 69999999999999999999999776543
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=98.90 E-value=1.4e-08 Score=98.57 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=51.7
Q ss_pred cccccCCCC-CCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC
Q 014198 2 AATLLAPSS-APTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA 77 (429)
Q Consensus 2 ~~~~~a~g~-~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~ 77 (429)
.+++||||+ .|..+ ||..+. +++..++........... ...........+|+|||||.+|+.+|..|.+.|.
T Consensus 230 d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~----~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga 305 (464)
T PRK12831 230 DAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYK----PEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGA 305 (464)
T ss_pred CEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhccccc----ccccCcccCCCeEEEECCcHHHHHHHHHHHHcCC
Confidence 478999999 57765 666543 444444322211100000 0000011235699999999999999999999999
Q ss_pred cEEEEcCCC
Q 014198 78 AVTLIEKSS 86 (429)
Q Consensus 78 ~V~lie~~~ 86 (429)
+|+++++..
T Consensus 306 ~Vtlv~r~~ 314 (464)
T PRK12831 306 EVHIVYRRS 314 (464)
T ss_pred EEEEEeecC
Confidence 999998865
No 236
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.89 E-value=3.5e-09 Score=100.19 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 194 TLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 194 ~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.+.+.+ ++.|++++.++ |+++.. + .+.+.++.++.+|.||+|+|...+..+
T Consensus 196 ~~~~~l-~~~gV~v~~~~~v~~i~~---~---~v~~~~g~~i~~D~vi~a~G~~p~~~l 247 (364)
T TIGR03169 196 LVLRLL-ARRGIEVHEGAPVTRGPD---G---ALILADGRTLPADAILWATGARAPPWL 247 (364)
T ss_pred HHHHHH-HHCCCEEEeCCeeEEEcC---C---eEEeCCCCEEecCEEEEccCCChhhHH
Confidence 566666 78899999999 998852 2 356677889999999999998776544
No 237
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.88 E-value=9.7e-09 Score=100.33 Aligned_cols=34 Identities=38% Similarity=0.631 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4689999999999999999999999999999986
No 238
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.88 E-value=1.4e-08 Score=87.53 Aligned_cols=32 Identities=47% Similarity=0.680 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998876
No 239
>PRK10262 thioredoxin reductase; Provisional
Probab=98.88 E-value=3e-08 Score=92.07 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSV 87 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~ 87 (429)
...+||+|||||++|+++|..|+++|++|+++|+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 4578999999999999999999999999999997654
No 240
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=3.8e-08 Score=93.46 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=84.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPD 131 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 131 (429)
...+|+|||||++||.+|.+|.+.|++|+++||.+--+|. |...+... .....+|+.+...+....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl-----------W~y~~~~~---~~~ss~Y~~l~tn~pKe~ 70 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL-----------WKYTENVE---VVHSSVYKSLRTNLPKEM 70 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce-----------EeecCccc---ccccchhhhhhccCChhh
Confidence 3579999999999999999999999999999999832222 11111100 000022333322222100
Q ss_pred CcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCc--EEEE
Q 014198 132 NYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGL--EVVI 209 (429)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv--~v~~ 209 (429)
+ .-..+++.+. ......+..+++++|...+ +.-++ .|.+
T Consensus 71 -~--------------------------~~~dfpf~~~-----------~~~~~p~~~e~~~YL~~yA-~~F~l~~~i~f 111 (448)
T KOG1399|consen 71 -M--------------------------GYSDFPFPER-----------DPRYFPSHREVLEYLRDYA-KHFDLLKMINF 111 (448)
T ss_pred -h--------------------------cCCCCCCccc-----------CcccCCCHHHHHHHHHHHH-HhcChhhheEe
Confidence 0 0000111110 0011123357888888888 77665 6888
Q ss_pred ce-EEEEEEccCCcEEEEEEeCC----eEEEcCEEEEcCCCCc
Q 014198 210 GK-VERVGVGEGGRVESVMIEGG----RVVESDAVVLALGPWS 247 (429)
Q Consensus 210 ~~-v~~i~~~~~g~v~~v~~~~g----~~i~ad~vV~a~G~~s 247 (429)
++ |.++....+|. |.|.+.++ .+.-+|.||+|+|.+.
T Consensus 112 ~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 112 NTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred cccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 88 99998872255 45666543 3567899999999985
No 241
>PLN02487 zeta-carotene desaturase
Probab=98.87 E-value=1e-06 Score=86.95 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEcc--CC--cEEEEEEe---CCeEEEcCEEEEcCCCCchHHH
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGE--GG--RVESVMIE---GGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~--~g--~v~~v~~~---~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.+.+.+.+.+ ++.|++|++++ |.+|..+. ++ ++++|++. ++..+.+|.||.|++.+....+
T Consensus 296 ~l~~pl~~~L-~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 296 RLSGPIAKYI-TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred HHHHHHHHHH-HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence 4788889999 89999999999 99998862 22 37788872 3456899999999998755443
No 242
>PRK14694 putative mercuric reductase; Provisional
Probab=98.86 E-value=9.1e-08 Score=93.50 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=35.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
...+||+|||||++|+++|..|++.|++|+|||++.+|+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GG 42 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGG 42 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccccc
Confidence 457999999999999999999999999999999986544
No 243
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.85 E-value=4.3e-07 Score=84.11 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=35.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
.+.+||+|||+|++||++|++|.+.|++|+|+|.++ .++
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 457899999999999999999999999999999998 444
No 244
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.85 E-value=1.9e-08 Score=96.21 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
..+.+.+.+.+ +..|+++++++ |++|..++++++++|++.+|++++|+.||.....+..
T Consensus 232 g~L~qal~r~~-a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLC-AIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHH-HHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 56888888888 88899999999 9999887557788899988989999999997777655
No 245
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.85 E-value=3.6e-08 Score=80.88 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=30.2
Q ss_pred EEECCCHHHHHHHHHHHHC-----CCcEEEEcCCCCccccc
Q 014198 57 AVCGGGIIGVCTAYFLAKK-----GAAVTLIEKSSVACAAS 92 (429)
Q Consensus 57 vIIGaGi~Gl~~A~~L~~~-----G~~V~lie~~~~~~~~s 92 (429)
+|||+|+.|++++.+|.++ ..+|+|+|+...+.|..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~ 41 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGA 41 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcccccc
Confidence 5999999999999999987 46899999977754433
No 246
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.85 E-value=1.2e-06 Score=85.58 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCcEEEEce-EEEEEEcc--CC--cEEEEEEeCC---eEEEcCEEEEcCCCCchHHH
Q 014198 191 FTKTLLNKAVNDYGLEVVIGK-VERVGVGE--GG--RVESVMIEGG---RVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 191 l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~--~g--~v~~v~~~~g---~~i~ad~vV~a~G~~s~~~~ 251 (429)
+.+.+.+.+ ++.|++|+.++ |++|..++ ++ ++++|++.++ +.+.+|.||+|+..+...-+
T Consensus 221 l~~pl~~~L-~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 221 LTKPILEYI-EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred HHHHHHHHH-HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 567788888 78899999999 99998752 23 3666777544 46899999999998755444
No 247
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.84 E-value=2.8e-08 Score=86.93 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhh------cCcEEEEce-EEEEEEccCCcEEEEEEeC--C--eEEEcCEEEEcCCCCch
Q 014198 190 LFTKTLLNKAVND------YGLEVVIGK-VERVGVGEGGRVESVMIEG--G--RVVESDAVVLALGPWSG 248 (429)
Q Consensus 190 ~l~~~l~~~~~~~------~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~--g--~~i~ad~vV~a~G~~s~ 248 (429)
.++++|..++ ++ .-++|..++ |++|..+ +|+|.+|...| | ..+.++.||+|+|+++.
T Consensus 140 ei~~~L~~~l-~k~as~~pe~~ki~~nskvv~il~n-~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 140 EIVKALSTRL-KKKASENPELVKILLNSKVVDILRN-NGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHH-HHhhhcChHHHhhhhcceeeeeecC-CCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 4556666655 32 138899999 9999977 89999988764 2 36789999999998764
No 248
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=1.2e-07 Score=92.55 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
++||+|||||++|+++|..++++|++|+|||+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4899999999999999999999999999999743
No 249
>PLN02546 glutathione reductase
Probab=98.82 E-value=9.5e-08 Score=94.35 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEK 84 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~ 84 (429)
.+|||+|||+|++|..+|..++++|++|+|||+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 250
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.80 E-value=1.7e-07 Score=91.55 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=35.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcccc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAA 91 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~ 91 (429)
++||+|||||++|+++|..|++.|++|+|||++.+++.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c 42 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVC 42 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCce
Confidence 589999999999999999999999999999997655443
No 251
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.79 E-value=9.8e-08 Score=93.29 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACA 90 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~ 90 (429)
+||+|||||++|+++|..|+++|++|+|||++.+++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence 6999999999999999999999999999999875443
No 252
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.79 E-value=3.7e-08 Score=97.20 Aligned_cols=34 Identities=41% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||||..|+.+|..|++.|.+|+++++.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 4689999999999999999999999999999765
No 253
>PTZ00058 glutathione reductase; Provisional
Probab=98.79 E-value=1.1e-07 Score=93.90 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=35.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
..++||+|||||++|..+|..+++.|++|+|||++.+|+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GG 84 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGG 84 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 357899999999999999999999999999999975443
No 254
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.78 E-value=9.7e-06 Score=79.44 Aligned_cols=37 Identities=51% Similarity=0.917 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcCCC-Ccc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK----GAAVTLIEKSS-VAC 89 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~----G~~V~lie~~~-~~~ 89 (429)
..||+|||||++||++|++|+++ |++|+|+|+++ +|+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 36899999999999999999998 99999999998 554
No 255
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=1.4e-08 Score=89.65 Aligned_cols=131 Identities=23% Similarity=0.340 Sum_probs=96.5
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.++||||++|..| ||..+.+-+-. +..+. ..+.+++|||||.++++.|--++..|.++.
T Consensus 156 ~iLIAtGg~p~~PnIpG~E~gidSDg-------ff~Le------------e~Pkr~vvvGaGYIavE~Agi~~gLgseth 216 (478)
T KOG0405|consen 156 HILIATGGRPIIPNIPGAELGIDSDG-------FFDLE------------EQPKRVVVVGAGYIAVEFAGIFAGLGSETH 216 (478)
T ss_pred eEEEEeCCccCCCCCCchhhcccccc-------ccchh------------hcCceEEEEccceEEEEhhhHHhhcCCeeE
Confidence 4789999999987 88877532211 11111 446799999999999999999999999999
Q ss_pred EEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCccccC
Q 014198 81 LIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSNKAN 160 (429)
Q Consensus 81 lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
|+=|.. ..++.+.+....
T Consensus 217 lfiR~~-------------------------------kvLR~FD~~i~~------------------------------- 234 (478)
T KOG0405|consen 217 LFIRQE-------------------------------KVLRGFDEMISD------------------------------- 234 (478)
T ss_pred EEEecc-------------------------------hhhcchhHHHHH-------------------------------
Confidence 998887 455555444333
Q ss_pred CCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEE
Q 014198 161 SLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAV 239 (429)
Q Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~v 239 (429)
.+.+.+ ...|++++.++ ++++.+..++.. .+.+..+..-..|.+
T Consensus 235 ---------------------------------~v~~~~-~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~l 279 (478)
T KOG0405|consen 235 ---------------------------------LVTEHL-EGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTL 279 (478)
T ss_pred ---------------------------------HHHHHh-hhcceeecccccceeeeecCCCce-EEEEeccccccccEE
Confidence 566667 77899999999 999988745543 345555644458999
Q ss_pred EEcCCCCchH
Q 014198 240 VLALGPWSGK 249 (429)
Q Consensus 240 V~a~G~~s~~ 249 (429)
+.|+|-..+.
T Consensus 280 lwAiGR~Pnt 289 (478)
T KOG0405|consen 280 LWAIGRKPNT 289 (478)
T ss_pred EEEecCCCCc
Confidence 9999965443
No 256
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.78 E-value=7.1e-06 Score=80.13 Aligned_cols=35 Identities=51% Similarity=0.806 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC-Ccc
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS-VAC 89 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~-~~~ 89 (429)
+|+|||||++||++|+.|+++| ++|+|+|+.+ +|+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 6999999999999999999988 8999999998 554
No 257
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.78 E-value=7.7e-08 Score=94.07 Aligned_cols=36 Identities=36% Similarity=0.404 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
+||+|||||++|+.+|+.|+++|++|+|||+..+|+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG 37 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGG 37 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 799999999999999999999999999999954544
No 258
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.77 E-value=2.2e-07 Score=91.23 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~ 85 (429)
.+||+|||||++|+++|..|+++|++|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 259
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.77 E-value=3.4e-07 Score=89.33 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=32.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVA 88 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~ 88 (429)
.||+|||+|++|+.+|..++++|.+|+|||++.++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~g 36 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLG 36 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence 48999999999999999999999999999998753
No 260
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.76 E-value=2.5e-08 Score=97.71 Aligned_cols=142 Identities=23% Similarity=0.146 Sum_probs=78.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNY 133 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (429)
.+|+|||||++||.+|..|.+.|++|+++||.+-.+|...... +...-. ..+|+.+.......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~--------~~~~g~------~~~y~sl~~n~sk~--- 64 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTE--------NPEDGR------SSVYDSLHTNTSKE--- 64 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHST--------TCCCSE------GGGSTT-B-SS-GG---
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCC--------cCCCCc------cccccceEEeeCch---
Confidence 4799999999999999999999999999999983333211000 000000 00111111000000
Q ss_pred CeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCc--EEEEce
Q 014198 134 GYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGL--EVVIGK 211 (429)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv--~v~~~~ 211 (429)
.+....+++-+ ...-.....++.++|.+.+ +..++ .|.+++
T Consensus 65 ------------------------~~~fsdfp~p~------------~~p~f~~~~~v~~Yl~~Ya-~~f~L~~~I~fnt 107 (531)
T PF00743_consen 65 ------------------------MMAFSDFPFPE------------DYPDFPSHSEVLEYLESYA-EHFGLRKHIRFNT 107 (531)
T ss_dssp ------------------------GSCCTTS-HCC------------CCSSSEBHHHHHHHHHHHH-HHTTGGGGEETSE
T ss_pred ------------------------HhcCCCcCCCC------------CCCCCCCHHHHHHHHHHHH-hhhCCcceEEEcc
Confidence 00000000000 0112345678888898888 76665 689999
Q ss_pred -EEEEEEccCC---cEEEEEEeCC-e--EEEcCEEEEcCCCCchH
Q 014198 212 -VERVGVGEGG---RVESVMIEGG-R--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 212 -v~~i~~~~~g---~v~~v~~~~g-~--~i~ad~vV~a~G~~s~~ 249 (429)
|+++++.++. .-|.|++.++ . +-.+|.||+|+|.++..
T Consensus 108 ~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 108 EVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp EEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred EEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 9999986332 2356776543 2 34579999999987744
No 261
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.75 E-value=2.7e-07 Score=84.53 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGK 249 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~ 249 (429)
..+..++.+.+ ++.|.+|++.. |.+|..+ +|++.+|.+.||++++++.||--++.|-.-
T Consensus 264 Gavs~aia~~~-~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 264 GAVSFAIAEGA-KRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hHHHHHHHHHH-Hhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence 46777888888 88999999999 9999998 799999999999999999999888877654
No 262
>PRK13748 putative mercuric reductase; Provisional
Probab=98.75 E-value=2.6e-07 Score=92.70 Aligned_cols=38 Identities=37% Similarity=0.488 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
..+||+|||||++|+.+|..|++.|++|+|||++.+|+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG 134 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGG 134 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCccee
Confidence 36899999999999999999999999999999985543
No 263
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.74 E-value=7.3e-08 Score=95.73 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC-e---EEEcCEEEEcCCC-CchHHH
Q 014198 193 KTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG-R---VVESDAVVLALGP-WSGKFE 251 (429)
Q Consensus 193 ~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g-~---~i~ad~vV~a~G~-~s~~~~ 251 (429)
..++..++.+.|++|+.++ |++|..+ ++++.+|++.++ . .+.++.||+|+|+ ++..++
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 3444445246789999999 9999987 788888887543 2 3579999999998 777766
No 264
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.74 E-value=3.2e-07 Score=89.67 Aligned_cols=36 Identities=42% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVA 88 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~ 88 (429)
.+||+|||||++|+++|..|++.|++|+|||++.++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~G 38 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLG 38 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 589999999999999999999999999999995443
No 265
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.74 E-value=1.2e-07 Score=91.38 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=32.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+.+|||||||.+|+.+|..|.+.+++|+|||+.+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 345799999999999999999987789999999887
No 266
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.74 E-value=6.8e-06 Score=77.89 Aligned_cols=32 Identities=47% Similarity=0.787 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~ 86 (429)
.|+|||||++||++||+|++++ .+|+|+|+++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~ 35 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 6899999999999999999999 9999999987
No 267
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.73 E-value=2.2e-07 Score=90.71 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCe-----EEEcCEEEEcCCCCc
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGR-----VVESDAVVLALGPWS 247 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~-----~i~ad~vV~a~G~~s 247 (429)
+..+.+.|.+.+ ++.|++|++++ |++|..++++++.+|++.+++ ++.||.||+|+.+..
T Consensus 212 ~~~l~~~l~~~l-~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 212 PERLCQPIVDYI-TSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred hHHHHHHHHHHH-HhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 356788888888 77899999999 999987646777778886654 789999999998644
No 268
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.73 E-value=6.6e-08 Score=100.90 Aligned_cols=35 Identities=40% Similarity=0.553 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 46799999999999999999999999999999987
No 269
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.71 E-value=1.1e-07 Score=87.33 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||+|..|+.+|..|++.+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4589999999999999999999999999999875
No 270
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=8.6e-08 Score=88.20 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=93.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC--CccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS--VACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELN 128 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~--~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (429)
...+||||||||-+|+++|.+.++.|.+.+|+.... ++.-+..-+.|-+.-+..-.+ .+.+..++....
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrE---------VDALdGl~~rvc 96 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMRE---------VDALDGLCSRVC 96 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeee---------ehhhcchHhhhh
Confidence 457999999999999999999999999999998775 433222222222221100000 011111111111
Q ss_pred CCCCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEE
Q 014198 129 GPDNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVV 208 (429)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~ 208 (429)
.. .....+.++...- + .....-.++|...|-+.+.+.+....+.+|+
T Consensus 97 D~-----------------------------s~vq~k~LNrs~G-P---AVwg~RAQiDR~lYkk~MQkei~st~nL~ir 143 (679)
T KOG2311|consen 97 DQ-----------------------------SGVQYKVLNRSKG-P---AVWGLRAQIDRKLYKKNMQKEISSTPNLEIR 143 (679)
T ss_pred hh-----------------------------hhhhHHHhhccCC-C---cccChHHhhhHHHHHHHHHHHhccCCcchhh
Confidence 10 0000011110000 0 0012335677888888888888556788999
Q ss_pred EceEEEEEEccCC----cEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 209 IGKVERVGVGEGG----RVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 209 ~~~v~~i~~~~~g----~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
.+.|.++...+.+ ++.+|.+.+|..+.|+.||+.||-+..
T Consensus 144 e~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~ 187 (679)
T KOG2311|consen 144 EGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLR 187 (679)
T ss_pred hhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeecccee
Confidence 9887776554122 478899999999999999999997654
No 271
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.69 E-value=1.3e-07 Score=88.95 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~-V~lie~~~ 86 (429)
..+|+|||+|..|+.+|..|.+.|.+ |+|+++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35899999999999999999999987 99999765
No 272
>PRK09897 hypothetical protein; Provisional
Probab=98.69 E-value=2e-07 Score=91.06 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC-Ccccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS-VACAA 91 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~-~~~~~ 91 (429)
++|+|||||+.|+++|..|.+.+ .+|+|+|+.. +|.|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 48999999999999999999865 5899999976 66554
No 273
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.68 E-value=1.3e-06 Score=77.09 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCe--EEEcCEEEEcCCCCchH
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~--~i~ad~vV~a~G~~s~~ 249 (429)
++.+.|.+.+ ++.|+.+..+. |.+.+.. +++|..+.+.+.. .++||.+|+|+|.+-.+
T Consensus 259 Rl~~~L~~~f-~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 259 RLHNQLQRQF-EQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSFFSK 319 (421)
T ss_pred hHHHHHHHHH-HHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeeccccccc
Confidence 4666788888 88899999999 9999988 8899999988764 46899999999975443
No 274
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.68 E-value=1.4e-07 Score=97.42 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=50.7
Q ss_pred cccccCCCC-CCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC
Q 014198 2 AATLLAPSS-APTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA 77 (429)
Q Consensus 2 ~~~~~a~g~-~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~ 77 (429)
-+++||||+ .|..+ ||..+. +++..++............. .........+|+|||||.+|+.+|..+.+.|.
T Consensus 519 davvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~----~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga 594 (752)
T PRK12778 519 KGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPD----SDTPIKFGKKVAVVGGGNTAMDSARTAKRLGA 594 (752)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhccccccc----ccCcccCCCcEEEECCcHHHHHHHHHHHHcCC
Confidence 368999999 47765 676543 44444322211111000000 00001234689999999999999999999998
Q ss_pred c-EEEEcCCC
Q 014198 78 A-VTLIEKSS 86 (429)
Q Consensus 78 ~-V~lie~~~ 86 (429)
+ |+|+++..
T Consensus 595 ~~Vtlv~r~~ 604 (752)
T PRK12778 595 ERVTIVYRRS 604 (752)
T ss_pred CeEEEeeecC
Confidence 7 99999865
No 275
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.68 E-value=2.2e-07 Score=90.55 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|.+|+.+|..|++.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999998 899999865
No 276
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.67 E-value=1.6e-08 Score=92.80 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~ 86 (429)
||+||||+|.+|+.+|..|++.| ++|+|||++.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 69999999999999999999997 7999999997
No 277
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.67 E-value=1.7e-07 Score=91.19 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~ 86 (429)
+|+|||||++|+++|..|++.+ .+|+|||+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 6999999999999999999875 5899999987
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.67 E-value=5.5e-07 Score=87.82 Aligned_cols=35 Identities=34% Similarity=0.533 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
+|+|||||++|+++|..|++.|++|+|||++.+++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG 36 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGG 36 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 79999999999999999999999999999987543
No 279
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.66 E-value=8.6e-08 Score=90.74 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCcEEEEceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 194 TLLNKAVNDYGLEVVIGKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 194 ~l~~~~~~~~Gv~v~~~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
.+.+.+ ++.|++++.+.|++++.+ +. .|.+.+++++++|.+|+|||+...
T Consensus 59 ~~~~~~-~~~gv~~~~~~v~~id~~-~~---~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 59 DLRRLA-RQAGARFVIAEATGIDPD-RR---KVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred cHHHHH-HhcCCEEEEEEEEEEecc-cC---EEEECCCCcccccEEEEccCCCCC
Confidence 455666 677999988779999876 33 367777888999999999997654
No 280
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.65 E-value=1.5e-07 Score=82.85 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=41.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC---CccccccccCCeeee
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS---VACAASGKAGGFLAL 101 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~---~~~~~s~~~~g~~~~ 101 (429)
..+||+|||+|.+|+.+|.+|+++|.+|+|+|+.. +++.+-+.-+|++..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~v 56 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLV 56 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEe
Confidence 46899999999999999999999999999999875 455555666666653
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.65 E-value=1.9e-07 Score=92.30 Aligned_cols=34 Identities=44% Similarity=0.411 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||||..|+.+|..|+..+.+|+|+++.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 4689999999999999999999999999999876
No 282
>PRK14727 putative mercuric reductase; Provisional
Probab=98.65 E-value=9.4e-07 Score=86.60 Aligned_cols=36 Identities=36% Similarity=0.473 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++|++|||+|++|+++|..|++.|.+|+|||++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 457899999999999999999999999999999974
No 283
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.64 E-value=1.3e-07 Score=87.94 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=78.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
+.+|||||||.+|+.+|..|.++- .+|+|||+... ..+..+..+.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~------------------------------hl~~plL~ev--- 49 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY------------------------------HLFTPLLYEV--- 49 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc------------------------------cccchhhhhh---
Confidence 468999999999999999999974 89999999982 1122222111
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHh-hcCcEEEE
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVN-DYGLEVVI 209 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~-~~Gv~v~~ 209 (429)
..+.+++..+.-.+.+.+ + ..++++..
T Consensus 50 ---------------------------------------------------a~g~l~~~~i~~p~~~~~-~~~~~v~~~~ 77 (405)
T COG1252 50 ---------------------------------------------------ATGTLSESEIAIPLRALL-RKSGNVQFVQ 77 (405)
T ss_pred ---------------------------------------------------hcCCCChhheeccHHHHh-cccCceEEEE
Confidence 112233333333666777 5 33499999
Q ss_pred ceEEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 210 GKVERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 210 ~~v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
++|++|+.+ ..+ |.+.++..+..|.+|+|.|+.+..+.
T Consensus 78 ~~V~~ID~~-~k~---V~~~~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 78 GEVTDIDRD-AKK---VTLADLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred EEEEEEccc-CCE---EEeCCCccccccEEEEecCCcCCcCC
Confidence 999999986 443 66767678999999999998776554
No 284
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.63 E-value=3.8e-07 Score=96.63 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+||+|||||++|+++|+.|++.|++|+|+|+++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~ 196 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQP 196 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46899999999999999999999999999999987
No 285
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.63 E-value=8.8e-07 Score=84.64 Aligned_cols=39 Identities=31% Similarity=0.372 Sum_probs=35.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
..+||++|||+|++|..+|..+++.|.||.+||+.. +|+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGG 41 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGG 41 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCc
Confidence 457999999999999999999999999999999995 443
No 286
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.63 E-value=1.1e-07 Score=98.02 Aligned_cols=35 Identities=49% Similarity=0.800 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 45799999999999999999999999999999987
No 287
>PRK07846 mycothione reductase; Reviewed
Probab=98.62 E-value=9.8e-07 Score=85.66 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACA 90 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~ 90 (429)
++|++|||+|++|..+|.. ..|++|+|||++.+|+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGt 36 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGT 36 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCc
Confidence 3799999999999988865 46999999999765543
No 288
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.57 E-value=6.9e-07 Score=83.72 Aligned_cols=34 Identities=41% Similarity=0.561 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 3589999999999999999999999999999876
No 289
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.57 E-value=2.4e-06 Score=83.61 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
++|++|||+|++|..+|..+++.|++|+|||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~ 35 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVT 35 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4899999999999999999999999999999853
No 290
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.57 E-value=2.6e-07 Score=88.32 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=35.7
Q ss_pred hhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 201 NDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 201 ~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
.+.|++++.++ |+.++.+ +. .|.+.+|..+.+|.+|+|||....
T Consensus 69 ~~~~i~~~~g~~V~~id~~-~~---~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRD-TR---ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred HHCCCEEEcCCEEEEEECC-CC---EEEECCCCEEEcCEEEEccCCCCC
Confidence 45699999998 9999875 33 256667888999999999998764
No 291
>PRK02106 choline dehydrogenase; Validated
Probab=98.57 E-value=9.5e-07 Score=88.33 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAK-KGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~-~G~~V~lie~~~ 86 (429)
..++|+||||+|.+|+.+|..|++ .|++|+|||++.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456899999999999999999999 899999999996
No 292
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1.4e-06 Score=86.99 Aligned_cols=61 Identities=21% Similarity=0.167 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchH
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGK 249 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~ 249 (429)
...++..|.+.+ .+.|++++.++ ++++..+++|+|.+|... ++. .+.|+.||+|||++...
T Consensus 125 G~~i~~~L~~~~-~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGN-LKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHH-hccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 467889999988 78899999999 999987547889888763 343 57899999999998864
No 293
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.56 E-value=3.1e-06 Score=77.01 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=53.0
Q ss_pred cceeEehHHHHHHHH--HHHHhhcCcEEEEce-EEEEEE------ccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHh
Q 014198 182 TTAQVHPQLFTKTLL--NKAVNDYGLEVVIGK-VERVGV------GEGGRVESVMIEGGRVVESDAVVLALGPWSGKFEL 252 (429)
Q Consensus 182 ~~~~~~~~~l~~~l~--~~~~~~~Gv~v~~~~-v~~i~~------~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~ 252 (429)
.++.+...-+...|. +...+..++++.+.+ +..+.. ++.+-+..+.+.+|..+..|.+|.|.|..+.....
T Consensus 143 ~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~ 222 (481)
T KOG3855|consen 143 MAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKA 222 (481)
T ss_pred ceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhhh
Confidence 345666666666776 333355689999999 888765 23566677888899999999999999998876663
No 294
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.56 E-value=8.5e-08 Score=86.73 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=44.1
Q ss_pred HHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 194 TLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 194 ~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
+-++.+ ++.||.++.+. |.++... .+.+ .+.++||.+++.|.||+|+|-..+.-+
T Consensus 398 wt~eki-r~~GV~V~pna~v~sv~~~-~~nl-~lkL~dG~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 398 WTIEKI-RKGGVDVRPNAKVESVRKC-CKNL-VLKLSDGSELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred HHHHHH-HhcCceeccchhhhhhhhh-ccce-EEEecCCCeeeeeeEEEEecCCCchhh
Confidence 566777 78899999999 9999876 4443 378889999999999999996555443
No 295
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.55 E-value=2.5e-07 Score=85.81 Aligned_cols=36 Identities=36% Similarity=0.434 Sum_probs=28.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGA--AVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~--~V~lie~~~ 86 (429)
....+|+|||||..+.+++..|.+++. +|+++-|..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 456799999999999999999999874 899999987
No 296
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.55 E-value=1.3e-07 Score=65.22 Aligned_cols=32 Identities=44% Similarity=0.759 Sum_probs=29.0
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 58 VCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 58 IIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
|||||++|+++|+.|+++|++|+|+|+.+ +++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 89999999999999999999999999998 544
No 297
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.55 E-value=8.4e-07 Score=94.02 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=88.3
Q ss_pred cccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC-
Q 014198 2 AATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA- 77 (429)
Q Consensus 2 ~~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~- 77 (429)
..+|||||+.|..+ ||..++ +++....... +... ......+|+|||+|..|+.+|..|++.|.
T Consensus 276 ~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~--l~~~-----------~~~~gk~VvViG~G~~g~e~A~~L~~~G~~ 342 (985)
T TIGR01372 276 KRVVLATGAHERPLVFANNDRPGVMLAGAARTY--LNRY-----------GVAPGKRIVVATNNDSAYRAAADLLAAGIA 342 (985)
T ss_pred CEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHH--HHhh-----------CcCCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence 36899999999876 565443 3332211100 0000 00124689999999999999999999995
Q ss_pred cEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeeeEEeecccccCCCCCcc
Q 014198 78 AVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTLSLTVTESQQSGSKPSN 157 (429)
Q Consensus 78 ~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (429)
.|+|+|..+ ....
T Consensus 343 vV~vv~~~~-------------------------------~~~~------------------------------------ 355 (985)
T TIGR01372 343 VVAIIDARA-------------------------------DVSP------------------------------------ 355 (985)
T ss_pred eEEEEccCc-------------------------------chhH------------------------------------
Confidence 588998765 1100
Q ss_pred ccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe----CCe
Q 014198 158 KANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE----GGR 232 (429)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~----~g~ 232 (429)
.+.+.+ ++.|++++.++ |+++..+ +++.+|++. ++.
T Consensus 356 ------------------------------------~l~~~L-~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~ 396 (985)
T TIGR01372 356 ------------------------------------EARAEA-RELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQ 396 (985)
T ss_pred ------------------------------------HHHHHH-HHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceE
Confidence 344555 67799999999 9999743 445555544 456
Q ss_pred EEEcCEEEEcCCCCchHHH
Q 014198 233 VVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 233 ~i~ad~vV~a~G~~s~~~~ 251 (429)
++.+|.|+++.|...+.-+
T Consensus 397 ~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 397 RLEADALAVSGGWTPVVHL 415 (985)
T ss_pred EEECCEEEEcCCcCchhHH
Confidence 8999999999997766544
No 298
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.54 E-value=5.8e-08 Score=79.76 Aligned_cols=39 Identities=33% Similarity=0.529 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC-Ccccc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS-VACAA 91 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~-~~~~~ 91 (429)
+.||+|||+|-+|+++||.++++ ..+|.|||..- +++|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 46999999999999999999864 58999999987 55444
No 299
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.53 E-value=5.1e-07 Score=89.88 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||||.+|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999876
No 300
>PRK12831 putative oxidoreductase; Provisional
Probab=98.51 E-value=3e-07 Score=89.38 Aligned_cols=36 Identities=42% Similarity=0.426 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 346799999999999999999999999999999876
No 301
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.50 E-value=8.8e-07 Score=86.46 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKK-GAAVTLIEKS 85 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~-G~~V~lie~~ 85 (429)
.++||+|||||++|..+|..++++ |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 368999999999999999999997 9999999984
No 302
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.50 E-value=5.1e-07 Score=93.67 Aligned_cols=35 Identities=46% Similarity=0.728 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++|+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 35799999999999999999999999999999987
No 303
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.49 E-value=2.5e-06 Score=82.87 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCcc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVAC 89 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~ 89 (429)
++|++|||+|++|..+|. +..|.+|+|||++.+|+
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~~GG 36 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGTFGG 36 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCCCCC
Confidence 589999999999988864 45799999999976544
No 304
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.47 E-value=1.3e-06 Score=85.43 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=38.5
Q ss_pred HHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe-----CC---------eEEEcCEEEEcCCCCch
Q 014198 196 LNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE-----GG---------RVVESDAVVLALGPWSG 248 (429)
Q Consensus 196 ~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-----~g---------~~i~ad~vV~a~G~~s~ 248 (429)
.+.+ ++.|+++++++ +++|..+ ++++.+|++. +| .++.+|.||+|+|...+
T Consensus 336 ~~~~-~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~ 401 (471)
T PRK12810 336 VSNA-HEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGP 401 (471)
T ss_pred HHHH-HHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCC
Confidence 4455 66799999999 9999765 6777666542 11 57999999999997654
No 305
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.47 E-value=9.2e-07 Score=85.66 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~ 86 (429)
.+|+|||||++|+++|..|++. +.+|+|||+++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 3799999999999999999886 58999999987
No 306
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.46 E-value=1.1e-06 Score=92.07 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=51.4
Q ss_pred cccccCCCCC-CCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC
Q 014198 2 AATLLAPSSA-PTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA 77 (429)
Q Consensus 2 ~~~~~a~g~~-p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~ 77 (429)
-+++||||+. |+.+ ||..+. +++..++........... ... ..........+|+|||||.+|+.+|..+.+.|.
T Consensus 394 DAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~-~~~-~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga 471 (944)
T PRK12779 394 WKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLD-DDY-ETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGG 471 (944)
T ss_pred CEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhcccc-ccc-cccccccCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence 4789999995 6654 676544 444443322111100000 000 000000134689999999999999999999999
Q ss_pred cEEEEcCCC
Q 014198 78 AVTLIEKSS 86 (429)
Q Consensus 78 ~V~lie~~~ 86 (429)
+|+++.+..
T Consensus 472 ~Vtlv~rr~ 480 (944)
T PRK12779 472 NVTIVYRRT 480 (944)
T ss_pred EEEEEEecC
Confidence 999998765
No 307
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.44 E-value=2.5e-06 Score=80.48 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 379999999999999999999999999999876
No 308
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.43 E-value=5e-07 Score=95.27 Aligned_cols=35 Identities=37% Similarity=0.504 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35799999999999999999999999999999986
No 309
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.43 E-value=2.5e-06 Score=83.14 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|.+|+.+|..+.+.|. +|+||++..
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4689999999999999999999995 799999865
No 310
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=4.3e-07 Score=80.48 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEc-cCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVG-EGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~-~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.++..+|.+.. +++.|++..-. ++++++. ..+....|++.+|..++++.||++||+.-+++.
T Consensus 266 pkl~~ale~Hv-~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~n 329 (520)
T COG3634 266 PKLAAALEAHV-KQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMN 329 (520)
T ss_pred hHHHHHHHHHH-hhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCC
Confidence 56777899999 89999999988 9999873 234456789999999999999999998776654
No 311
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.9e-07 Score=82.26 Aligned_cols=66 Identities=27% Similarity=0.311 Sum_probs=51.9
Q ss_pred ccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
-++||||-+|++| ||....-+++.++-... ..+-+-+|||||.++|++|-+|+--|++|+
T Consensus 164 ~fvIatG~RPrYp~IpG~~Ey~ITSDDlFsl~------------------~~PGkTLvVGa~YVaLECAgFL~gfg~~vt 225 (503)
T KOG4716|consen 164 NFVIATGLRPRYPDIPGAKEYGITSDDLFSLP------------------YEPGKTLVVGAGYVALECAGFLKGFGYDVT 225 (503)
T ss_pred eEEEEecCCCCCCCCCCceeeeeccccccccc------------------CCCCceEEEccceeeeehhhhHhhcCCCcE
Confidence 3689999999998 88765555665541111 234578999999999999999999999999
Q ss_pred EEcCCC
Q 014198 81 LIEKSS 86 (429)
Q Consensus 81 lie~~~ 86 (429)
+.-|.-
T Consensus 226 VmVRSI 231 (503)
T KOG4716|consen 226 VMVRSI 231 (503)
T ss_pred EEEEEe
Confidence 988764
No 312
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.41 E-value=4.7e-06 Score=83.69 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~ 85 (429)
+|||+|||+|++|..+|..+++.|++|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999976
No 313
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.41 E-value=5.5e-07 Score=93.08 Aligned_cols=35 Identities=43% Similarity=0.459 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++|+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46799999999999999999999999999999975
No 314
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.41 E-value=9.2e-07 Score=83.16 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....+|+|||+|++|+++|..|++.|++|+++|+.+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 345799999999999999999999999999999987
No 315
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.41 E-value=1.8e-06 Score=82.12 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~ 86 (429)
.+|+|||||++|+++|..|.+.+ .+|+||++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 58999999999999999998854 6899999876
No 316
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.41 E-value=9e-07 Score=86.28 Aligned_cols=36 Identities=42% Similarity=0.541 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....+|+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 345799999999999999999999999999999987
No 317
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.39 E-value=3.9e-06 Score=88.65 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=49.1
Q ss_pred cccccCCCCC-CCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC
Q 014198 2 AATLLAPSSA-PTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA 77 (429)
Q Consensus 2 ~~~~~a~g~~-p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~ 77 (429)
.++|||||+. |+.+ ||..+. +++..++.......... ..+..........+|+|||||.+|+.+|..+.+.|.
T Consensus 519 DaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~---~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa 595 (1006)
T PRK12775 519 DAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGD---KFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGA 595 (1006)
T ss_pred CEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCcc---ccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCC
Confidence 4789999995 6655 675443 44443321111110000 000001111235689999999999999999999997
Q ss_pred c-EEEEcCCC
Q 014198 78 A-VTLIEKSS 86 (429)
Q Consensus 78 ~-V~lie~~~ 86 (429)
+ |+++.+..
T Consensus 596 ~~Vtiv~rr~ 605 (1006)
T PRK12775 596 PTVRCVYRRS 605 (1006)
T ss_pred CEEEEEeecC
Confidence 5 77787654
No 318
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.38 E-value=2.3e-06 Score=82.73 Aligned_cols=35 Identities=43% Similarity=0.531 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAK--KGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~--~G~~V~lie~~~ 86 (429)
...+|+|||||++|+++|..|++ .|++|+|+|+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 45789999999999999999987 799999999998
No 319
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.38 E-value=6.3e-07 Score=81.78 Aligned_cols=149 Identities=23% Similarity=0.243 Sum_probs=93.0
Q ss_pred ccccCCCCCCCcc--CcceEEEeecccccccee-----eeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHH-
Q 014198 3 ATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTT-----FINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAK- 74 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~- 74 (429)
.||+|+|+.|..+ ||......-.+.+.+... +.+...+......+.+...--.++|||||+.|.+.|.+|+.
T Consensus 161 yLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Df 240 (491)
T KOG2495|consen 161 YLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADF 240 (491)
T ss_pred EEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHH
Confidence 5899999999765 776443111122211111 11111111111112122334589999999999999999974
Q ss_pred -------------CCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCCcCeeeeeee
Q 014198 75 -------------KGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDNYGYRALTTL 141 (429)
Q Consensus 75 -------------~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (429)
.-.+|+++|..+ .++.-+.+.+.
T Consensus 241 i~~Dl~k~yp~l~~~i~vtLiEA~d-------------------------------~iL~mFdkrl~------------- 276 (491)
T KOG2495|consen 241 IPEDLRKIYPELKKDIKVTLIEAAD-------------------------------HILNMFDKRLV------------- 276 (491)
T ss_pred HHHHHHHhhhcchhheEEEeeccch-------------------------------hHHHHHHHHHH-------------
Confidence 236899999887 44444443332
Q ss_pred EEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccC
Q 014198 142 SLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEG 220 (429)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~ 220 (429)
.+..+++ .+.|+++..++ |.++..+
T Consensus 277 ---------------------------------------------------~yae~~f-~~~~I~~~~~t~Vk~V~~~-- 302 (491)
T KOG2495|consen 277 ---------------------------------------------------EYAENQF-VRDGIDLDTGTMVKKVTEK-- 302 (491)
T ss_pred ---------------------------------------------------HHHHHHh-hhccceeecccEEEeecCc--
Confidence 2556666 77899999999 9988643
Q ss_pred CcEEEEEEeCC--eEEEcCEEEEcCCCCchHHH
Q 014198 221 GRVESVMIEGG--RVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 221 g~v~~v~~~~g--~~i~ad~vV~a~G~~s~~~~ 251 (429)
. ..+.+.+| .+|..-.+|.+||..++.+.
T Consensus 303 -~-I~~~~~~g~~~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 303 -T-IHAKTKDGEIEEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred -E-EEEEcCCCceeeecceEEEecCCCCCchhh
Confidence 2 23444444 46788999999998877766
No 320
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.33 E-value=1.2e-06 Score=84.89 Aligned_cols=35 Identities=43% Similarity=0.525 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++|+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46799999999999999999999999999999986
No 321
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.32 E-value=2.7e-06 Score=88.20 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=36.9
Q ss_pred HHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 197 NKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 197 ~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
+.+ ++.|++++.++ |++++.+ .. .|.+.+|..+.+|.+|+|||....
T Consensus 67 ~~~-~~~gI~~~~g~~V~~Id~~-~~---~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 67 GFY-EKHGIKVLVGERAITINRQ-EK---VIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred HHH-HhCCCEEEcCCEEEEEeCC-Cc---EEEECCCcEEECCEEEECCCCCcC
Confidence 344 66799999999 9999865 32 356677888999999999998654
No 322
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.32 E-value=3.5e-06 Score=87.24 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK-G-AAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~-G-~~V~lie~~~ 86 (429)
..+|+|||||.+|+.+|..+.+. | .+|+++.++.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 56899999999999999998887 5 4899999875
No 323
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.5e-06 Score=68.98 Aligned_cols=122 Identities=21% Similarity=0.309 Sum_probs=83.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGPDN 132 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 132 (429)
..+|+|||+|+++-.+|.+++++-.|-+|+|-...++-+ .+|.+.-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~---pGGQLtT------------------------------- 53 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIA---PGGQLTT------------------------------- 53 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcC---CCceeee-------------------------------
Confidence 458999999999999999999999999999865422211 0111111
Q ss_pred cCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhcCcEEEEceE
Q 014198 133 YGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGKV 212 (429)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~v 212 (429)
..+-++ +.|+ .--+....++..+.++. .+.|.+++.++|
T Consensus 54 -----------TT~veN--------------------------fPGF---Pdgi~G~~l~d~mrkqs-~r~Gt~i~tEtV 92 (322)
T KOG0404|consen 54 -----------TTDVEN--------------------------FPGF---PDGITGPELMDKMRKQS-ERFGTEIITETV 92 (322)
T ss_pred -----------eecccc--------------------------CCCC---CcccccHHHHHHHHHHH-Hhhcceeeeeeh
Confidence 000000 0010 01133456777888888 888999999999
Q ss_pred EEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHHh
Q 014198 213 ERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFEL 252 (429)
Q Consensus 213 ~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~~ 252 (429)
.++... ++...+.+ +.+.+.||.||+|||+.+..+..
T Consensus 93 skv~~s--skpF~l~t-d~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 93 SKVDLS--SKPFKLWT-DARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred hhcccc--CCCeEEEe-cCCceeeeeEEEecccceeeeec
Confidence 999875 33344555 56789999999999998877653
No 324
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.30 E-value=1.8e-06 Score=89.36 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=37.8
Q ss_pred HHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 196 LNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 196 ~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
.+.+ ++.|++++.++ |++|+.+ .. .|.+.+|.++.+|.+|+|||....
T Consensus 61 ~~~~-~~~gv~~~~g~~V~~Id~~-~k---~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 61 KDWY-EKHGITLYTGETVIQIDTD-QK---QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred HHHH-HHCCCEEEcCCeEEEEECC-CC---EEEECCCcEeeCCEEEECCCCCcC
Confidence 3445 66799999999 9999865 33 366777888999999999998654
No 325
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.30 E-value=8.8e-06 Score=72.46 Aligned_cols=38 Identities=34% Similarity=0.682 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
+...+|+|||+|++|+++|+.|+++ ++|+|+|.+. +|+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 3467899999999999999999986 8999999998 443
No 326
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.27 E-value=2e-06 Score=83.22 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||+|..|+.+|.+|++.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 5689999999999999999999999999998864
No 327
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.27 E-value=3e-06 Score=82.56 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||+|++|+++|..|+++|++|+|+|+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45799999999999999999999999999999987
No 328
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.26 E-value=5.7e-06 Score=83.94 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
...+|+|||+|.+|+.+|..|.+.|. +|+|+.+..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35689999999999999999999996 599998765
No 329
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.26 E-value=2.7e-06 Score=83.21 Aligned_cols=35 Identities=40% Similarity=0.580 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++|+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45799999999999999999999999999999987
No 330
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.25 E-value=4.1e-05 Score=75.03 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSV 87 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~ 87 (429)
+||+|||+|++|+.+|+.|+++|++|+|||++..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~ 34 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAA 34 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCc
Confidence 5999999999999999999999999999999983
No 331
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.24 E-value=1.5e-06 Score=88.81 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=33.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....+|+|||||++|+++|++|+++|++|+++|+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 346799999999999999999999999999999875
No 332
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.24 E-value=2.8e-06 Score=86.45 Aligned_cols=35 Identities=40% Similarity=0.613 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999999999999999999999999986
No 333
>PLN02785 Protein HOTHEAD
Probab=98.23 E-value=5.5e-05 Score=75.49 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+..+|+||||||.+|+.+|..|++ +.+|+|||++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 457999999999999999999999 69999999996
No 334
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.19 E-value=4.6e-06 Score=84.60 Aligned_cols=35 Identities=40% Similarity=0.706 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35799999999999999999999999999999987
No 335
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.18 E-value=4.1e-05 Score=71.33 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC-Ccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS-VAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~-~~~ 89 (429)
....+|||||||++|+++|..|.+.| .+|+|+|..+ +|+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 34568999999999999999999766 6899999988 553
No 336
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.17 E-value=2.3e-05 Score=79.86 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||||..|+.+|..+.+.|. +|+++.+..
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 4689999999999999999999996 699998765
No 337
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.17 E-value=2.7e-05 Score=77.78 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEe---CCe--EEEcCEEEEcCCCCchHH
Q 014198 188 PQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIE---GGR--VVESDAVVLALGPWSGKF 250 (429)
Q Consensus 188 ~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~---~g~--~i~ad~vV~a~G~~s~~~ 250 (429)
...++..|.+.+ ++.|++|++++ ++++..+ +|+|.++... ++. .+.|+.||+|||++....
T Consensus 118 G~~i~~~L~~~~-~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~~ 184 (565)
T TIGR01816 118 GHAILHTLYQQN-LKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRIY 184 (565)
T ss_pred hHHHHHHHHHHH-HhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccccC
Confidence 357888999988 78899999999 9999987 8889888763 343 678999999999987643
No 338
>PRK13984 putative oxidoreductase; Provisional
Probab=98.16 E-value=2e-05 Score=79.73 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC------cEEEEc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA------AVTLIE 83 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~------~V~lie 83 (429)
..+|+|||||.+|+.+|..|++.|. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999998753 677764
No 339
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.15 E-value=6.5e-06 Score=80.61 Aligned_cols=35 Identities=37% Similarity=0.555 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 34699999999999999999999999999999987
No 340
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.13 E-value=1.5e-05 Score=78.04 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||||..|+.+|..+.+.|. +|+++|..+
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 4689999999999999988888774 799998876
No 341
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.13 E-value=3.1e-05 Score=69.95 Aligned_cols=39 Identities=28% Similarity=0.299 Sum_probs=35.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACA 90 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~ 90 (429)
..+||+|||+|+.|-.+|...++.|.+.+.||++..-+|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGG 76 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGG 76 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCc
Confidence 479999999999999999999999999999999873333
No 342
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=3e-06 Score=82.14 Aligned_cols=39 Identities=33% Similarity=0.433 Sum_probs=35.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
....+|+|||||++|+++|..|.+.|.+|+|+|.++ +|+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 456799999999999999999999999999999998 543
No 343
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=3.2e-05 Score=70.32 Aligned_cols=70 Identities=29% Similarity=0.450 Sum_probs=48.4
Q ss_pred cccccCCCCCCCcc--CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 2 AATLLAPSSAPTYL--PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 2 ~~~~~a~g~~p~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
.++|||||+.+..| ||.. .+.. +. ..+..-+. . .-...+|+|||||-.++.-|++|++-+.+|
T Consensus 105 k~vIiAtG~~~~~~~~~~e~-e~~g-~g----v~yc~~cd--------g-~~~~k~v~ViGgG~sAve~Al~L~~~a~~V 169 (305)
T COG0492 105 KAVIIATGAGARKLGVPGEE-EFEG-KG----VSYCATCD--------G-FFKGKDVVVIGGGDSAVEEALYLSKIAKKV 169 (305)
T ss_pred eEEEECcCCcccCCCCCcch-hhcC-Cc----eEEeeecC--------c-cccCCeEEEEcCCHHHHHHHHHHHHhcCeE
Confidence 46899999999877 5433 2222 11 01110010 0 022459999999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
+++-|.+
T Consensus 170 tlv~r~~ 176 (305)
T COG0492 170 TLVHRRD 176 (305)
T ss_pred EEEecCc
Confidence 9999987
No 344
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.10 E-value=2.7e-05 Score=72.33 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=26.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~ 86 (429)
.+|+++||.|+.+|++|..|.+.+ .++..+|+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 479999999999999999999876 8999999887
No 345
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.08 E-value=1.7e-05 Score=82.67 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKK-GA-AVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~-G~-~V~lie~~~ 86 (429)
...+|+|||||.+|+.+|..+.+. |. +|++|.+..
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 356899999999999999998885 85 799999875
No 346
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.06 E-value=1.1e-05 Score=81.90 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||+|++|+++|+.|++.|++|+|+|+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 46799999999999999999999999999999987
No 347
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.06 E-value=6.5e-05 Score=72.85 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=40.2
Q ss_pred cccccCCCCCC-Ccc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHC
Q 014198 2 AATLLAPSSAP-TYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKK 75 (429)
Q Consensus 2 ~~~~~a~g~~p-~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~ 75 (429)
-++|||||+.+ ..+ ||.++. +++..++-....-.... . ..........+|+|||+|.+|+.+|..|.+.
T Consensus 116 DaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~--~---~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 116 HVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDC--V---HLPPDLKSSDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhh--h---hhhhcccCCCEEEEECCCHHHHHHHHHHHhC
Confidence 47899999986 333 776554 55554431111000000 0 0000001246899999999999999999876
No 348
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.05 E-value=5.2e-06 Score=81.95 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCC-----eEEEcCEEEEcCCCCc
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGG-----RVVESDAVVLALGPWS 247 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g-----~~i~ad~vV~a~G~~s 247 (429)
..+.++|.+.+ ++.|++|++++ |++|..+ ++++.+|.+.++ +++.||.||.++.+..
T Consensus 232 ~~l~~aL~~~~-~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 232 QTLSDRLVEAL-KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHHHHHH-HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 57889999999 88899999999 9999987 565556666554 5789999999998744
No 349
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.04 E-value=2.8e-05 Score=74.32 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLA-KKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~-~~G~~V~lie~~~ 86 (429)
...+|+|||||++|+.+|.+|+ +.|++|+|+||.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3568999999999999999765 6799999999998
No 350
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=5.4e-06 Score=78.40 Aligned_cols=36 Identities=39% Similarity=0.590 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
.+|+|+|||++||++|++|+++|++|+|+|+++ +|+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 379999999999999999999999999999999 554
No 351
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=7.4e-05 Score=70.21 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC---CcEEEEcCCC-Ccccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKG---AAVTLIEKSS-VACAA 91 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G---~~V~lie~~~-~~~~~ 91 (429)
++|+|||+|+.|+++|.+|.+.- .+|.|+|+.. ++.|-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 68999999999999999999841 2399999998 66554
No 352
>PLN02268 probable polyamine oxidase
Probab=98.02 E-value=6.3e-06 Score=80.03 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=33.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
.+|+|||||++||++|+.|.++|++|+|+|+++ +|+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 379999999999999999999999999999998 554
No 353
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.01 E-value=1.4e-05 Score=74.78 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=33.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
+||+|||||++|+++|+.|++.|.+|+|+|++. +|+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 699999999999999999999999999999987 554
No 354
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=8e-06 Score=72.00 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=36.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Cccccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAAS 92 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s 92 (429)
+|++|||||+.|+.+|..|++.|++|.||||++ +|+.+-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 799999999999999999999999999999998 887664
No 355
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.00 E-value=0.00011 Score=74.75 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|..|+..|..+.+.|. +|+++.+..
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5689999999999999999999995 799998765
No 356
>PLN02576 protoporphyrinogen oxidase
Probab=97.99 E-value=8.4e-06 Score=80.59 Aligned_cols=40 Identities=43% Similarity=0.594 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcCCC-Cccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK-GAAVTLIEKSS-VACA 90 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~-G~~V~lie~~~-~~~~ 90 (429)
...+||+|||||++||++|++|+++ |++|+|+|+.+ +|+-
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 3457999999999999999999999 99999999998 6553
No 357
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.99 E-value=1.9e-05 Score=79.18 Aligned_cols=36 Identities=44% Similarity=0.694 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....+|+|||+|++|+++|+.|++.|++|+++|+.+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 345789999999999999999999999999999987
No 358
>PRK13984 putative oxidoreductase; Provisional
Probab=97.95 E-value=2.1e-05 Score=79.54 Aligned_cols=36 Identities=44% Similarity=0.658 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....+|+|||+|++|+++|..|+++|++|+|+|+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 346789999999999999999999999999999987
No 359
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.92 E-value=7e-05 Score=77.06 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=45.0
Q ss_pred ccccCCCC-CCCcc--CcceEE-Eeeccccc-cceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHH---
Q 014198 3 ATLLAPSS-APTYL--PGLRLT-LIGSRKLS-KTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAK--- 74 (429)
Q Consensus 3 ~~~~a~g~-~p~~~--~g~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~--- 74 (429)
+++||||+ .|..+ ||.... +++..++. ......... ............|+|||||.+|+.+|..+..
T Consensus 500 AV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~-----~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~ 574 (1028)
T PRK06567 500 HIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSGGAFL-----KNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYK 574 (1028)
T ss_pred EEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhccccc-----ccccCcccCCCCEEEEcCcHHHHHHHHHHHhhcc
Confidence 78999999 68776 665433 44444421 111100000 0000011223579999999999999996654
Q ss_pred CCCcEEEEcCCC
Q 014198 75 KGAAVTLIEKSS 86 (429)
Q Consensus 75 ~G~~V~lie~~~ 86 (429)
.+..+++++...
T Consensus 575 l~ve~~l~~~~~ 586 (1028)
T PRK06567 575 KQVEEFAKDYIE 586 (1028)
T ss_pred chhhHHHHhhhh
Confidence 356677666543
No 360
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.91 E-value=1.3e-05 Score=74.52 Aligned_cols=38 Identities=39% Similarity=0.562 Sum_probs=34.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
...+++|||||++|+++|+.|++.|++|.||||.+ +|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 45789999999999999999999999999999999 544
No 361
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.88 E-value=0.00038 Score=66.18 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCC
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALG 244 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G 244 (429)
.++.+.+.+.+ .-.|..+..++ |.+|..++++++.+|.. +|++++|+.||....
T Consensus 232 GELpQ~FcRl~-AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~dps 286 (438)
T PF00996_consen 232 GELPQAFCRLS-AVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGDPS 286 (438)
T ss_dssp THHHHHHHHHH-HHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEEGG
T ss_pred ccHHHHHHHHh-hhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEECCc
Confidence 58889999988 77899999999 99999865788888875 788999999996443
No 362
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00054 Score=61.10 Aligned_cols=56 Identities=25% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-CccccccccCCeeeeccCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAASGKAGGFLALDWCDG 106 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~s~~~~g~~~~~~~~~ 106 (429)
...+|.+|||||-.||++|.+.+..|.+|.++|--. .+.|+|+.-+|.+..--+.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIP 73 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIP 73 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeeccccc
Confidence 457999999999999999999999999999999766 55788887777665544433
No 363
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00017 Score=63.94 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...|.|||||.+|.++||.++++|.+|.|.|.++
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 3468999999999999999999999999999886
No 364
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.81 E-value=0.001 Score=63.19 Aligned_cols=39 Identities=26% Similarity=0.527 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcCCCCcccc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK----GAAVTLIEKSSVACAA 91 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~----G~~V~lie~~~~~~~~ 91 (429)
..++=|||+|+++|++|.+|.+. |.+|+|+|+....+|+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 35788999999999999999985 5799999999854443
No 365
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.76 E-value=0.0012 Score=64.37 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK-GAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~-G~~V~lie~~~ 86 (429)
...+|.+|||||-+|+.+|-.|++. ..+|+|+|++.
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 5689999999999999999999995 58999999987
No 366
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.75 E-value=7.6e-05 Score=73.48 Aligned_cols=67 Identities=30% Similarity=0.399 Sum_probs=44.7
Q ss_pred ccccCCCCC--CCcc----Ccce---EEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHH
Q 014198 3 ATLLAPSSA--PTYL----PGLR---LTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLA 73 (429)
Q Consensus 3 ~~~~a~g~~--p~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~ 73 (429)
++++|||.- |..| ||.+ -.++.+++..+...+ ...+|+|||+|..|+-+|.+|+
T Consensus 141 ~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f-----------------~gKrVlVVG~g~Sg~DIa~el~ 203 (531)
T PF00743_consen 141 AVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPF-----------------KGKRVLVVGGGNSGADIAVELS 203 (531)
T ss_dssp EEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGG-----------------TTSEEEEESSSHHHHHHHHHHT
T ss_pred eEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhc-----------------CCCEEEEEeCCHhHHHHHHHHH
Confidence 589999965 4433 4542 124444444433332 2579999999999999999999
Q ss_pred HCCCcEEEEcCCC
Q 014198 74 KKGAAVTLIEKSS 86 (429)
Q Consensus 74 ~~G~~V~lie~~~ 86 (429)
+...+|.+.-|..
T Consensus 204 ~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 204 RVAKKVYLSTRRG 216 (531)
T ss_dssp TTSCCEEEECC--
T ss_pred HhcCCeEEEEecc
Confidence 9999999988775
No 367
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.74 E-value=4.1e-05 Score=65.93 Aligned_cols=67 Identities=36% Similarity=0.468 Sum_probs=40.2
Q ss_pred ccccCCCC--CCCcc--Cc-ceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC
Q 014198 3 ATLLAPSS--APTYL--PG-LRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGA 77 (429)
Q Consensus 3 ~~~~a~g~--~p~~~--~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~ 77 (429)
.+|+|||. .|..| || .....+.......... -...+|+|||+|..+..+|..|++.|.
T Consensus 129 ~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~~~~~-----------------~~~k~V~VVG~G~SA~d~a~~l~~~g~ 191 (203)
T PF13738_consen 129 RVVLATGHYSHPRIPDIPGSAFRPIIHSADWRDPED-----------------FKGKRVVVVGGGNSAVDIAYALAKAGK 191 (203)
T ss_dssp EEEE---SSCSB---S-TTGGCSEEEEGGG-STTGG-----------------CTTSEEEEE--SHHHHHHHHHHTTTCS
T ss_pred eEEEeeeccCCCCccccccccccceEehhhcCChhh-----------------cCCCcEEEEcChHHHHHHHHHHHhhCC
Confidence 58999996 66655 56 2222223322222211 235799999999999999999999999
Q ss_pred cEEEEcCCC
Q 014198 78 AVTLIEKSS 86 (429)
Q Consensus 78 ~V~lie~~~ 86 (429)
+|+++-|.+
T Consensus 192 ~V~~~~R~~ 200 (203)
T PF13738_consen 192 SVTLVTRSP 200 (203)
T ss_dssp EEEEEESS-
T ss_pred EEEEEecCC
Confidence 999999876
No 368
>PLN02568 polyamine oxidase
Probab=97.69 E-value=5.6e-05 Score=74.70 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCc
Q 014198 190 LFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247 (429)
Q Consensus 190 ~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s 247 (429)
.+.+.|.+.+ . +.+|++++ |++|..+ ++.+ .|++.+|.++.||.||+|.-...
T Consensus 243 ~Li~~La~~L-~--~~~I~ln~~V~~I~~~-~~~v-~V~~~dG~~~~aD~VIvTvPl~v 296 (539)
T PLN02568 243 SVIEALASVL-P--PGTIQLGRKVTRIEWQ-DEPV-KLHFADGSTMTADHVIVTVSLGV 296 (539)
T ss_pred HHHHHHHhhC-C--CCEEEeCCeEEEEEEe-CCeE-EEEEcCCCEEEcCEEEEcCCHHH
Confidence 4667776665 2 44799999 9999987 4443 47777888899999999987433
No 369
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.66 E-value=0.0011 Score=59.34 Aligned_cols=36 Identities=36% Similarity=0.326 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|.+|||||-.|+..|+..++.|.+|.|+|..-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 458999999999999999999999999999999873
No 370
>PLN02676 polyamine oxidase
Probab=97.59 E-value=9.5e-05 Score=72.43 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=34.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC-Ccc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS-VAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~-~~~ 89 (429)
..+||+|||||++|+++|+.|+++|. +|+|+|++. +|+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 46799999999999999999999998 599999998 554
No 371
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.50 E-value=0.001 Score=66.69 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~ 86 (429)
..+|+|||+|..|...|..+.+.| .+|+|+.+..
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 568999999999999999999988 6788888765
No 372
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.50 E-value=0.00014 Score=74.31 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
...+|+|||||++|+++|+.|++.|++|+|+|+.. +|+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 46799999999999999999999999999999998 543
No 373
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.49 E-value=0.001 Score=62.22 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=44.4
Q ss_pred ehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeC-CeEEEcCEEEEcCCCCc
Q 014198 187 HPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEG-GRVVESDAVVLALGPWS 247 (429)
Q Consensus 187 ~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~-g~~i~ad~vV~a~G~~s 247 (429)
....++..|.+.+ ++.||++++++ |++|. ++. ..+.+.+ +..++||.||+|||+.+
T Consensus 84 ~A~sVv~~L~~~l-~~~gV~i~~~~~V~~i~---~~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRL-AEQGVQFHTRHRWIGWQ---GGT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHH-HHCCCEEEeCCEEEEEe---CCc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 3467888999999 88999999999 99992 333 4566643 35699999999999865
No 374
>PLN02529 lysine-specific histone demethylase 1
Probab=97.47 E-value=0.00015 Score=73.56 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
...+|+|||||++|+++|..|+++|++|+|+|+.+ +|+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 46799999999999999999999999999999987 544
No 375
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.47 E-value=0.00017 Score=66.41 Aligned_cols=36 Identities=56% Similarity=0.876 Sum_probs=31.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcE--EEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAV--TLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V--~lie~~~ 86 (429)
....+|+|||||++||++||+|++++-+| +|+|+.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 34679999999999999999999998665 5699987
No 376
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0008 Score=56.44 Aligned_cols=73 Identities=27% Similarity=0.378 Sum_probs=48.7
Q ss_pred ccccCCCCCCCcc--CcceEE-EeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 014198 3 ATLLAPSSAPTYL--PGLRLT-LIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAV 79 (429)
Q Consensus 3 ~~~~a~g~~p~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V 79 (429)
++|+|||+...++ ||.... +++.. + .... .++. +.|. -...-.+|||||=+.++=|.+|.+.+.||
T Consensus 115 avI~atGAsAkRl~~pg~ge~~fWqrG-i--SaCA--VCDG-aapi-----frnk~laVIGGGDsA~EEA~fLtkyaskV 183 (322)
T KOG0404|consen 115 AVILATGASAKRLHLPGEGEGEFWQRG-I--SACA--VCDG-AAPI-----FRNKPLAVIGGGDSAMEEALFLTKYASKV 183 (322)
T ss_pred eEEEecccceeeeecCCCCcchHHhcc-c--chhh--cccC-cchh-----hcCCeeEEEcCcHHHHHHHHHHHhhccEE
Confidence 6899999998875 877443 22221 1 0000 0000 1111 12345889999999999999999999999
Q ss_pred EEEcCCC
Q 014198 80 TLIEKSS 86 (429)
Q Consensus 80 ~lie~~~ 86 (429)
.||-|.+
T Consensus 184 yii~Rrd 190 (322)
T KOG0404|consen 184 YIIHRRD 190 (322)
T ss_pred EEEEEhh
Confidence 9999886
No 377
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00015 Score=71.96 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++|+||||+|.+|+.+|..|++.|++|+|+|++.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 567999999999999999999999999999999994
No 378
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.28 E-value=0.00087 Score=64.44 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||||++|+++|..|++.|++|+++|+.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 4799999999999999999999999999999998
No 379
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.24 E-value=0.00041 Score=59.63 Aligned_cols=31 Identities=48% Similarity=0.589 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCcEEEEcCCC
Q 014198 56 VAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSS 86 (429)
Q Consensus 56 vvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~ 86 (429)
.+||||||+|.++|..|+.. ..+|+|+....
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 68999999999999999974 57899988765
No 380
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.23 E-value=0.0034 Score=57.83 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=32.6
Q ss_pred hcCcEEEEce-EEEEEEccCCcEEEEEEe-----CCeEEEcCEEEEcCCCC
Q 014198 202 DYGLEVVIGK-VERVGVGEGGRVESVMIE-----GGRVVESDAVVLALGPW 246 (429)
Q Consensus 202 ~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-----~g~~i~ad~vV~a~G~~ 246 (429)
+..++++.++ |..++..++|++ .+.+. +..+++.|.||+|||..
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCCCceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 3468999999 999998756653 33332 23578899999999975
No 381
>PLN03000 amine oxidase
Probab=97.22 E-value=0.00046 Score=70.72 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
...+|+|||||++|+.+|+.|.+.|++|+|+|+.. +|+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 35799999999999999999999999999999998 554
No 382
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.20 E-value=0.0017 Score=63.97 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999765
No 383
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.13 E-value=0.0028 Score=61.38 Aligned_cols=47 Identities=34% Similarity=0.489 Sum_probs=37.1
Q ss_pred hhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchH
Q 014198 201 NDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGK 249 (429)
Q Consensus 201 ~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~ 249 (429)
...|.+|++++ |++|+.+ ++++ .|.+.++.++.||.||+|+....-.
T Consensus 220 ~~~g~~i~l~~~V~~I~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 220 EELGGEIRLNTPVTRIERE-DGGV-TVTTEDGETIEADAVISAVPPSVLK 267 (450)
T ss_dssp HHHGGGEESSEEEEEEEEE-SSEE-EEEETTSSEEEESEEEE-S-HHHHH
T ss_pred hhcCceeecCCcceecccc-cccc-ccccccceEEecceeeecCchhhhh
Confidence 55578999999 9999998 6665 4777888899999999999865544
No 384
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0031 Score=56.67 Aligned_cols=70 Identities=34% Similarity=0.363 Sum_probs=47.4
Q ss_pred ccccCCCCCCCc--cCcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 014198 3 ATLLAPSSAPTY--LPGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVT 80 (429)
Q Consensus 3 ~~~~a~g~~p~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~ 80 (429)
.+|||||++=+- .||.... + ++...|...+ +++--+.+||+|||||-.|.++|..|+--=..|+
T Consensus 316 tvIlstGArWRn~nvPGE~e~----r--nKGVayCPHC--------DGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVt 381 (520)
T COG3634 316 TVILATGARWRNMNVPGEDEY----R--NKGVAYCPHC--------DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVT 381 (520)
T ss_pred eEEEecCcchhcCCCCchHHH----h--hCCeeeCCCC--------CCcccCCceEEEECCCcchHHHHHhHHhhhheee
Confidence 578999998554 3776431 1 1222222111 1111346899999999999999999997767899
Q ss_pred EEcCCC
Q 014198 81 LIEKSS 86 (429)
Q Consensus 81 lie~~~ 86 (429)
++|=.+
T Consensus 382 llEF~~ 387 (520)
T COG3634 382 LLEFAP 387 (520)
T ss_pred eeecch
Confidence 998765
No 385
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.04 E-value=0.00024 Score=62.77 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=30.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKK-G-AAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~-G-~~V~lie~~~ 86 (429)
..+++|+|||||-.|+++|..+.++ | -+|.|||...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4689999999999999999999874 4 4799999875
No 386
>PLN02976 amine oxidase
Probab=96.98 E-value=0.0012 Score=70.59 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
....+|+|||||++|+++|+.|++.|++|+|+|+.. +|+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 345799999999999999999999999999999987 543
No 387
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.95 E-value=0.0031 Score=58.36 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCCCcchhhhHHHHHHHHHHHHHhCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDGGPLSSLARASFNLHRSLAEELNGP 130 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 130 (429)
.+..+|||+|+|.+|.++...|-..-++|++|..+..- .+-.+ +
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF------------------------------lFTPL---L--- 96 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF------------------------------LFTPL---L--- 96 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccce------------------------------EEeec---c---
Confidence 45689999999999999999998888999999987610 00000 0
Q ss_pred CCcCeeeeeeeEEeecccccCCCCCccccCCCCCCCCCCCCCCCCccCccccceeEehHHHHHHHHHHHHhhc-CcEEEE
Q 014198 131 DNYGYRALTTLSLTVTESQQSGSKPSNKANSLIPSWVDGPARSPTTIGSTQTTAQVHPQLFTKTLLNKAVNDY-GLEVVI 209 (429)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~~-Gv~v~~ 209 (429)
.+...|.++.+.+++.+...+.+.. ++++++
T Consensus 97 ------------------------------------------------pS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e 128 (491)
T KOG2495|consen 97 ------------------------------------------------PSTTVGTVELRSIVEPIRAIARKKNGEVKYLE 128 (491)
T ss_pred ------------------------------------------------CCccccceeehhhhhhHHHHhhccCCCceEEe
Confidence 0134566777777777777763333 455555
Q ss_pred ceEEEEEEccCCcEE-EEEEeCC----eEEEcCEEEEcCCCCchHHH
Q 014198 210 GKVERVGVGEGGRVE-SVMIEGG----RVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 210 ~~v~~i~~~~~g~v~-~v~~~~g----~~i~ad~vV~a~G~~s~~~~ 251 (429)
...++++.+ ...|. ...+.++ ..+..|.+|+|+|+.++.+-
T Consensus 129 Aec~~iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg 174 (491)
T KOG2495|consen 129 AECTKIDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG 174 (491)
T ss_pred cccEeeccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC
Confidence 547777765 44332 1223344 46889999999999876553
No 388
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.91 E-value=0.11 Score=50.18 Aligned_cols=54 Identities=28% Similarity=0.479 Sum_probs=40.0
Q ss_pred HHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCch
Q 014198 193 KTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSG 248 (429)
Q Consensus 193 ~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~ 248 (429)
+.|.+.+ ++.|++|++++ |++|+.+ ++++..+...+++.+.||.||+|+.....
T Consensus 201 ~~l~~~l-~~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p~~~~ 255 (419)
T TIGR03467 201 EPARRWL-DSRGGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVPPRHA 255 (419)
T ss_pred HHHHHHH-HHcCCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCCHHHH
Confidence 4466677 67799999999 9999987 45443223336778999999999876544
No 389
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0043 Score=63.88 Aligned_cols=48 Identities=35% Similarity=0.506 Sum_probs=40.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeeeccCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLALDWCDG 106 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~~~~~~ 106 (429)
...+|.|||+|++|+++|-.|-+.|+.|+++||.+ +.+|+++.+..+.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d-------r~ggll~ygipnm 1831 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD-------RVGGLLMYGIPNM 1831 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC-------CcCceeeecCCcc
Confidence 45799999999999999999999999999999988 4556777655443
No 390
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.81 E-value=0.0032 Score=59.17 Aligned_cols=43 Identities=16% Similarity=0.496 Sum_probs=37.1
Q ss_pred hhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCc
Q 014198 201 NDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWS 247 (429)
Q Consensus 201 ~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s 247 (429)
++.|+++++++ |+.++.. +. .+.+.+|+.++.+.+++|||..+
T Consensus 138 ke~gIe~~~~t~v~~~D~~-~K---~l~~~~Ge~~kys~LilATGs~~ 181 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLA-SK---TLVLGNGETLKYSKLIIATGSSA 181 (478)
T ss_pred hhcCceEEEcceeEEeecc-cc---EEEeCCCceeecceEEEeecCcc
Confidence 77899999999 9999876 43 47788999999999999999833
No 391
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.74 E-value=0.011 Score=54.55 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~ 86 (429)
....|++.||-|+.-+++|..|.+.+ .++..+||.+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 45689999999999999999999975 8899999987
No 392
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.0045 Score=59.94 Aligned_cols=35 Identities=43% Similarity=0.427 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++|+|||+|-+|..+|-+|++.|.+|+++-|.+
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 36799999999999999999999999999999887
No 393
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.42 E-value=0.0066 Score=49.74 Aligned_cols=32 Identities=38% Similarity=0.519 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||||-.|.++|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999986
No 394
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.38 E-value=0.024 Score=56.32 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=38.3
Q ss_pred hhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHH
Q 014198 201 NDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 201 ~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~ 250 (429)
+++|++++.+. |+.|..+ +. .|.+++|.++..|.+|+|||.++..+
T Consensus 70 ~~~~i~L~~~~~v~~idr~-~k---~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 70 EENGITLYTGEKVIQIDRA-NK---VVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred HHcCcEEEcCCeeEEeccC-cc---eEEccCCcEeecceeEEecCcccccc
Confidence 77899999999 9999876 32 36777889999999999999866544
No 395
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.28 E-value=0.0064 Score=51.00 Aligned_cols=32 Identities=41% Similarity=0.592 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||+|..|...|..++..|++|+++|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999976
No 396
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0066 Score=55.32 Aligned_cols=36 Identities=36% Similarity=0.494 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcCCCCc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK--GAAVTLIEKSSVA 88 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~--G~~V~lie~~~~~ 88 (429)
...|+|||+|++|.-+|..|.++ +.+|.|+|+.+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 45899999999999999999984 6899999999844
No 397
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.03 E-value=0.011 Score=48.03 Aligned_cols=31 Identities=39% Similarity=0.554 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 56 VAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 56 vvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
|+|+|+|-+|+..|+.|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 398
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0088 Score=52.11 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+++|||+|-.|.++|..|.+.|++|++||++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 68999999999999999999999999999987
No 399
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.97 E-value=0.0083 Score=50.49 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||.|..|+.+|..|++.|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 68999999999999999999999999999987
No 400
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.63 E-value=0.032 Score=51.57 Aligned_cols=62 Identities=23% Similarity=0.357 Sum_probs=48.1
Q ss_pred cccceeEehHHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 180 TQTTAQVHPQLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 180 ~~~~~~~~~~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.+....++|..|-+ + ...||-+..+. |+.|..+ +. .|.+.||.+|..|..++|||.....+-
T Consensus 253 epd~FfvspeDLp~-----~-~nGGvAvl~G~kvvkid~~-d~---~V~LnDG~~I~YdkcLIATG~~Pk~l~ 315 (659)
T KOG1346|consen 253 EPDGFFVSPEDLPK-----A-VNGGVAVLRGRKVVKIDEE-DK---KVILNDGTTIGYDKCLIATGVRPKKLQ 315 (659)
T ss_pred cCCcceeChhHCcc-----c-ccCceEEEeccceEEeecc-cC---eEEecCCcEeehhheeeecCcCcccch
Confidence 35556667766543 3 45689999999 9999876 44 367889999999999999998887776
No 401
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=95.59 E-value=0.06 Score=52.21 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=32.8
Q ss_pred hhcCcEEEEce-EEEEEEccCCcEEEEEEe-CCeEEE--cCEEEEcCCCCch
Q 014198 201 NDYGLEVVIGK-VERVGVGEGGRVESVMIE-GGRVVE--SDAVVLALGPWSG 248 (429)
Q Consensus 201 ~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~-~g~~i~--ad~vV~a~G~~s~ 248 (429)
.+.|++++.++ |++++.+ +..+ .+... ++..+. +|.+|+|||....
T Consensus 55 ~~~gv~~~~~~~V~~id~~-~~~v-~~~~~~~~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDE-RQTV-VVRNNKTNETYEESYDYLILSPGASPI 104 (427)
T ss_pred HhcCCeEEecCEEEEEECC-CCEE-EEEECCCCCEEecCCCEEEECCCCCCC
Confidence 56699999898 9999865 4433 23322 235677 9999999998554
No 402
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.57 E-value=0.015 Score=53.56 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||+|..|.++|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999986
No 403
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.048 Score=50.27 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHHH
Q 014198 189 QLFTKTLLNKAVNDYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 189 ~~l~~~l~~~~~~~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~~ 251 (429)
.++.+.+.+.. .-.|+++..+. +.++...+++++.++... ++...++ -|+|.+.+.....
T Consensus 232 gEL~QgFaRls-AvyGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k-~vi~dpSY~~~~~ 292 (440)
T KOG1439|consen 232 GELPQGFARLS-AVYGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCK-KVICDPSYFPQKV 292 (440)
T ss_pred chhhHHHHHHh-hccCceeecCCceeeeeccCCccEEEEecC-Cceeecc-eEEecCccchHHH
Confidence 47778888877 67899999999 999998547887777653 4455667 6777777775554
No 404
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.43 E-value=0.029 Score=45.83 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKS 85 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~ 85 (429)
...|+|||||-+|..-|..|.+.|++|+||.+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 568999999999999999999999999999644
No 405
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.35 E-value=0.028 Score=47.92 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|..|..+|..|++.|. +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5789999999999999999999998 699999985
No 406
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.34 E-value=0.055 Score=42.99 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~-V~lie~~~ 86 (429)
...+++|||+|-+|-.+++.|.+.|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 367899999999999999999999987 99999876
No 407
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.31 E-value=0.51 Score=45.85 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=31.6
Q ss_pred cEEEEce-EEEEEEccCCcEEEEEEe-----------CC--eEEEcCEEEEcCCCCchHHH
Q 014198 205 LEVVIGK-VERVGVGEGGRVESVMIE-----------GG--RVVESDAVVLALGPWSGKFE 251 (429)
Q Consensus 205 v~v~~~~-v~~i~~~~~g~v~~v~~~-----------~g--~~i~ad~vV~a~G~~s~~~~ 251 (429)
+.+.+.. -++|... +++|.++++. .+ +++.++.|+-|.|..+..+.
T Consensus 326 i~l~F~~sP~ei~~~-~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~ 385 (506)
T PTZ00188 326 IEFIFYFEIRQIRPI-DGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA 385 (506)
T ss_pred EEEEccCCceEEECC-CCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC
Confidence 5566666 6667643 4667777665 12 36899999999998777654
No 408
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.026 Score=51.89 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..|.|||+|..|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999876
No 409
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.21 E-value=0.035 Score=47.56 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...|+|||||.+|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999998865
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.20 E-value=0.018 Score=43.31 Aligned_cols=35 Identities=37% Similarity=0.493 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....|+|||||-.|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35689999999999999999999999999998873
No 411
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.028 Score=51.06 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..|.|||+|..|...|..++..|++|+++|+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999987
No 412
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.15 E-value=0.038 Score=47.28 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...|+|||||-+|...|..|.+.|.+|+|+++..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 5689999999999999999999999999998754
No 413
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.11 E-value=0.035 Score=51.27 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||+|.+|...|..|++.|++|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999999865
No 414
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.06 E-value=0.029 Score=51.04 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|.++|..|+++|++|+++|+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999876
No 415
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.01 E-value=0.029 Score=51.09 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||+|..|..+|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 69999999999999999999999999999986
No 416
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.00 E-value=0.091 Score=52.00 Aligned_cols=38 Identities=42% Similarity=0.594 Sum_probs=34.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccccc
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VACAA 91 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~~~ 91 (429)
.||+|||||++|+++|..|+++|++|+|+|++. +|+.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999998 55544
No 417
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.033 Score=54.56 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|+|||.|.+|+++|..|.++|++|++.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999876
No 418
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.95 E-value=0.038 Score=50.79 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|+|||+|-+|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999864
No 419
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.94 E-value=0.094 Score=50.41 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=34.8
Q ss_pred hcCcEEEEce-EEEEEEccCCcEEEEEEeCCeEEEcCEEEEcCCCCchHH
Q 014198 202 DYGLEVVIGK-VERVGVGEGGRVESVMIEGGRVVESDAVVLALGPWSGKF 250 (429)
Q Consensus 202 ~~Gv~v~~~~-v~~i~~~~~g~v~~v~~~~g~~i~ad~vV~a~G~~s~~~ 250 (429)
+.+++++.++ |+++... .. .+.+.++ .+..|.+|+|+|+.....
T Consensus 65 ~~~i~~~~~~~v~~id~~-~~---~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPE-NK---VVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred hhCCEEeeCCEEEEecCC-CC---EEEECCC-cccccEEEEcCCCcccCC
Confidence 4589999999 9999865 33 2566666 888999999999877654
No 420
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.048 Score=49.81 Aligned_cols=33 Identities=36% Similarity=0.370 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|..+|..|+++|++|+++|+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999876
No 421
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.81 E-value=0.045 Score=43.49 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
+.+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4589999999999999999999997 799999987
No 422
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.71 E-value=0.045 Score=48.71 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||||++|..+|.-+.-.|.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 5699999999999999999999999999999986
No 423
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.70 E-value=0.046 Score=53.37 Aligned_cols=34 Identities=41% Similarity=0.607 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999875
No 424
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.68 E-value=0.041 Score=50.89 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||.|.+|+..|..|++.|++|+.+|.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999999986
No 425
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.62 E-value=0.059 Score=47.99 Aligned_cols=34 Identities=38% Similarity=0.565 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~ 86 (429)
...|+|||+|-+|..+|..|++.| -+++|+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 578999999999999999999999 6899999887
No 426
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.51 E-value=0.053 Score=50.77 Aligned_cols=33 Identities=39% Similarity=0.513 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|...|..|+++|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 469999999999999999999999999999853
No 427
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.51 E-value=0.06 Score=50.04 Aligned_cols=35 Identities=31% Similarity=0.643 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
...+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35789999999999999999999998 899999976
No 428
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.40 E-value=0.062 Score=49.58 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
-.+|.|||+|..|.++|..|++.|++|+++|+..
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999875
No 429
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.38 E-value=0.052 Score=49.57 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999876
No 430
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.34 E-value=0.078 Score=43.74 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGI-IGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi-~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|||+|- +|..+|..|.++|.+|+++.+..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 467999999996 69999999999999999999864
No 431
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.32 E-value=0.059 Score=49.54 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|+|||+|-.|...|..|++.|++|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999999999999854
No 432
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.32 E-value=0.059 Score=49.57 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEK 84 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~ 84 (429)
+|+|||+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999998
No 433
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.30 E-value=0.07 Score=49.59 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5689999999999999999999997 899999986
No 434
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.28 E-value=0.08 Score=43.86 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 5789999999999999999999999999999875
No 435
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.25 E-value=0.055 Score=49.13 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|..+|..|+++|++|+++|..+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999876
No 436
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.21 E-value=0.086 Score=45.13 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
....|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35789999999999999999999997 899999986
No 437
>PRK04148 hypothetical protein; Provisional
Probab=94.14 E-value=0.054 Score=42.43 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..++++||.| .|.+.|..|++.|++|+.+|..+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999 99999999999999999999987
No 438
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.12 E-value=0.087 Score=48.21 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..|.|||+|..|..+|..|+..|++|+++|+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999876
No 439
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.10 E-value=0.089 Score=43.84 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 499999986
No 440
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.02 E-value=0.1 Score=41.96 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999997 799999987
No 441
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.01 E-value=0.063 Score=45.41 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.....|.|||+|..|..+|.-.+..|++|.|+|+..
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 445789999999999999999999999999999987
No 442
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=93.96 E-value=0.04 Score=52.87 Aligned_cols=49 Identities=24% Similarity=0.190 Sum_probs=40.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCCCccccccccCCeeee
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSSVACAASGKAGGFLAL 101 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~~~~~~s~~~~g~~~~ 101 (429)
.+|.+|||+|-+|+..|..|++.|.++.++.+..+....+....|.++.
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA 103 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINA 103 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhh
Confidence 4899999999999999999999999999999987655555555555554
No 443
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.95 E-value=0.11 Score=39.92 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 56 VAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 56 vvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
|+|+|.|..|..++..|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 6899999999999999999888999999987
No 444
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.72 E-value=0.098 Score=48.10 Aligned_cols=32 Identities=34% Similarity=0.685 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~ 86 (429)
+|.|||+|.+|.++|+.|+.+| .+|.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 5899999876
No 445
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.70 E-value=0.12 Score=44.56 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~-V~lie~~~ 86 (429)
..+|+|||+|-.|..+|..|++.|.. ++|+|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 57899999999999999999999975 99999986
No 446
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.67 E-value=0.084 Score=50.81 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=27.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEK 84 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~ 84 (429)
...|+|||+|..|.-+|..+++....|.+..+
T Consensus 186 ~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 186 DKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred CceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence 57899999999999999999988777777654
No 447
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=1.6 Score=41.81 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGA--AVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~--~V~lie~~~ 86 (429)
...+|+|+|+|+.-+-.-+.|.++|+ +|+++.|..
T Consensus 195 ~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 195 ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 34569999999999999999999986 599998876
No 448
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.58 E-value=0.12 Score=48.04 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999965
No 449
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.54 E-value=0.097 Score=50.32 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||.|..|+.+|..|+++|++|+.+|+.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 469999999999999999999999999999876
No 450
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.53 E-value=0.11 Score=47.61 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
.+|.|||+|..|..+|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 369999999999999999999886 899999854
No 451
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.51 E-value=0.11 Score=48.65 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~ 86 (429)
.+|+|||+|-+|..+|..|+++| .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 47999999999999999999999 8999999985
No 452
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.35 E-value=0.13 Score=48.59 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|+|||+|.+|..+|..|...|.+|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999876
No 453
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.32 E-value=0.15 Score=47.00 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..+|.|||+|..|..+|..|++.|++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999875
No 454
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.19 E-value=0.24 Score=44.95 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|-+|.++|+.|++.|. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4689999999999999999999997 799999876
No 455
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.16 E-value=0.16 Score=44.79 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 5789999999999999999999995 799999887
No 456
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.12 E-value=0.16 Score=44.63 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-----------CcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKG-----------AAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G-----------~~V~lie~~~ 86 (429)
...+|+|||+|-.|+.++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4679999999999999999999974 3899999886
No 457
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.09 E-value=0.045 Score=56.89 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcCCC
Q 014198 51 HSKKHVAVCGGGIIGVCTAYFLAKKGAA-VTLIEKSS 86 (429)
Q Consensus 51 ~~~~dvvIIGaGi~Gl~~A~~L~~~G~~-V~lie~~~ 86 (429)
.+..+|+|||||=.|.-+--.-.+.|.+ |.=+|--+
T Consensus 1922 ~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp 1958 (2142)
T KOG0399|consen 1922 AKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLP 1958 (2142)
T ss_pred cCCCeEEEECCCCccccccccchhhccceecceeecC
Confidence 4567999999999887766666667753 44455433
No 458
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.99 E-value=0.11 Score=49.93 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||.|..|+.+|..|+++|++|+++|+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 58999999999999999999999999999875
No 459
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.99 E-value=0.14 Score=47.67 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||+|-.|...|..|++.|++|+++++..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999865
No 460
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.95 E-value=0.17 Score=44.69 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
...+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35799999999999999999999996 799999886
No 461
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=92.92 E-value=0.14 Score=44.06 Aligned_cols=35 Identities=37% Similarity=0.531 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSSV 87 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~~ 87 (429)
...|+|||.|-+|.+++..|++.|. +++|||.+..
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 5789999999999999999999996 7999999983
No 462
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.92 E-value=0.14 Score=46.43 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||.|..|.++|..|+++|++|+++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999875
No 463
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.88 E-value=0.15 Score=50.28 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999876
No 464
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.85 E-value=0.17 Score=48.19 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...|+|+|+|.+|+.+|..++..|.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 5689999999999999999999999999999876
No 465
>PRK08328 hypothetical protein; Provisional
Probab=92.84 E-value=0.19 Score=44.07 Aligned_cols=34 Identities=41% Similarity=0.644 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
...|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5689999999999999999999996 699998876
No 466
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.83 E-value=0.13 Score=50.63 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|.|||+|..|..+|..|++.|++|+++|+.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999886
No 467
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.83 E-value=0.24 Score=40.80 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
.+|-|||-|..|...|..|.++|++|.++++.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 478999999999999999999999999999875
No 468
>PLN02576 protoporphyrinogen oxidase
Probab=92.74 E-value=5.5 Score=39.44 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcC-cEEEEce-EEEEEEccCCcEEEEEEe--CC-eEEEcCEEEEcCCCCc
Q 014198 190 LFTKTLLNKAVNDYG-LEVVIGK-VERVGVGEGGRVESVMIE--GG-RVVESDAVVLALGPWS 247 (429)
Q Consensus 190 ~l~~~l~~~~~~~~G-v~v~~~~-v~~i~~~~~g~v~~v~~~--~g-~~i~ad~vV~a~G~~s 247 (429)
.+.+.|.+.+ + .+|++++ |++|+..+++.+ .|.+. +| .++.||.||+|+-...
T Consensus 240 ~L~~~la~~l----~~~~i~l~~~V~~I~~~~~~~~-~v~~~~~~g~~~~~ad~VI~a~P~~~ 297 (496)
T PLN02576 240 TLPDALAKRL----GKDKVKLNWKVLSLSKNDDGGY-SLTYDTPEGKVNVTAKAVVMTAPLYV 297 (496)
T ss_pred HHHHHHHHhh----CcCcEEcCCEEEEEEECCCCcE-EEEEecCCCceeEEeCEEEECCCHHH
Confidence 4555555444 4 6899999 999998734323 34433 44 3699999999986443
No 469
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.74 E-value=0.21 Score=46.14 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|.+|..+|+.++..|+ +++|+|..+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4689999999999999999999996 899999876
No 470
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=92.72 E-value=3.2 Score=37.01 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=71.6
Q ss_pred cCEEEEcCCCCchHHHhhhcccccccceeeEEE--e-cCCCCCCCCCceeEeeeccCCCCCCCCCCCceEecCCCcEEEe
Q 014198 236 SDAVVLALGPWSGKFELLASMFRVSGLKAHSII--L-EPKEADAITPHALFLSYYPAQGEGGKPMDPEVYPRPTGEVYLC 312 (429)
Q Consensus 236 ad~vV~a~G~~s~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 312 (429)
|+.+|+|+|.+|+-...+....+.. +.+.+. + +...+.+-..+.++.+ .....+|+....+..+.
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v--~S~fvGl~l~~~~lp~~~~ghvil~~----------~~pil~YqI~~~etR~L 69 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQV--RSYFVGLILKDAPLPKPNHGHVILGK----------PGPILLYQISSNETRVL 69 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCce--eeeEEEEEEcCCCCCCCCceEEEEcC----------CCcEEEEEcCCCceEEE
Confidence 7889999999998777554333322 222222 2 2222111122233322 23456777766655554
Q ss_pred ccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccc---------cCcccccce---eeeeecccCCCCCceeccCCCCCc
Q 014198 313 GMSSEQEVPDDPETVSGDPASIQVLKRVARTVSSH---------LGEEAQVKA---EQACFLPCTDDGVPVIGELPGIKG 380 (429)
Q Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~---------l~~~~~~~~---~~~g~r~~t~d~~p~ig~~~~~~~ 380 (429)
-.......| ...+.+..+.+.+.+...+|. +.+ .++.. .|.-..+...++..++|..-
T Consensus 70 vdvp~~k~P-----~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~-~rirsMPn~~lp~~~~~~~G~vllGDA~---- 139 (276)
T PF08491_consen 70 VDVPGPKLP-----SVSNGELKEYLREVVAPQLPEELRPSFEKALED-GRIRSMPNSFLPASPNWKPGVVLLGDAA---- 139 (276)
T ss_pred EEeCCCccC-----CccchHHHHHHHHHHHhhchHHHHHHHHHHhcc-CCcceecccccCCCCCCCCCEEEEehhh----
Confidence 422221111 111234445555544444431 111 11211 11111222344555666432
Q ss_pred EEEEecCCCccchhhHHHHHHHHHHHh
Q 014198 381 CYVGTGHNCWGILNGPATGAALAELVM 407 (429)
Q Consensus 381 ~~~~~G~~~~G~~~a~~~a~~la~~i~ 407 (429)
-+--..-|.||+.|.--+.++++++.
T Consensus 140 -nmrHPLTGgGMTVAl~Dv~lL~~lL~ 165 (276)
T PF08491_consen 140 -NMRHPLTGGGMTVALNDVVLLRDLLS 165 (276)
T ss_pred -cCcCCccccchhhHHHHHHHHHHHHh
Confidence 22223446699999999999999993
No 471
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.71 E-value=0.22 Score=42.57 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...++|+|.|-.|..+|..|.+.|++|++.|+..
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4579999999999999999999999999998765
No 472
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.67 E-value=0.3 Score=47.30 Aligned_cols=32 Identities=34% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEK 84 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~ 84 (429)
..+|+|||+|-+++-+|....+.|. +|+.+++
T Consensus 262 gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~ 294 (457)
T COG0493 262 GKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYR 294 (457)
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCeEEEEecc
Confidence 3799999999999999999999997 6877763
No 473
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.63 E-value=0.21 Score=43.75 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5789999999999999999999996 799999886
No 474
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.62 E-value=0.15 Score=40.44 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=27.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 56 VAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 56 vvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
++|+|+|..+..++..++..|++|+++|.++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999886
No 475
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.59 E-value=0.37 Score=35.49 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC---CcEEEE-cCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKG---AAVTLI-EKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G---~~V~li-e~~~ 86 (429)
+|.|||+|-.|.+++..|.+.| .+|.++ ++.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 4789999999999999999999 899977 8876
No 476
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.56 E-value=0.19 Score=46.71 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999875
No 477
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.42 E-value=0.31 Score=35.11 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=29.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKK-GAAVTLIEK 84 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~-G~~V~lie~ 84 (429)
..+++|+|+|.+|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46799999999999999999998 688999998
No 478
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.35 E-value=0.22 Score=43.40 Aligned_cols=34 Identities=21% Similarity=0.499 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc---EEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAA---VTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~---V~lie~~~ 86 (429)
..+++|+|+|-+|..+|..|.+.|.+ +.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46899999999999999999999975 99999985
No 479
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.32 E-value=0.23 Score=42.31 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|-.|.++|..|++.|. +++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5789999999999999999999997 599999886
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.31 E-value=0.17 Score=52.26 Aligned_cols=33 Identities=39% Similarity=0.537 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..|.|||+|..|..+|..++..|++|+|+|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999886
No 481
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.30 E-value=0.66 Score=41.52 Aligned_cols=33 Identities=36% Similarity=0.471 Sum_probs=29.1
Q ss_pred cEEEE-CCCHHHHHHHHHHHHCCCcEEEEcCCCC
Q 014198 55 HVAVC-GGGIIGVCTAYFLAKKGAAVTLIEKSSV 87 (429)
Q Consensus 55 dvvII-GaGi~Gl~~A~~L~~~G~~V~lie~~~~ 87 (429)
.|+|. |+|.+|.-++.+|.+.|++|+|+|.-.-
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~ 35 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSN 35 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCeEEEEecCCC
Confidence 47777 5999999999999999999999998653
No 482
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.25 E-value=0.25 Score=43.10 Aligned_cols=34 Identities=41% Similarity=0.514 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
...|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5689999999999999999999997 899999887
No 483
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.21 E-value=0.17 Score=49.86 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..|.|||+|..|..+|..|++.|++|+++|+.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999886
No 484
>PRK08223 hypothetical protein; Validated
Probab=92.19 E-value=0.25 Score=44.35 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
..+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5789999999999999999999996 799999887
No 485
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.13 E-value=0.2 Score=49.02 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...+|+|+|+|.+|+.++..+...|.+|+++|..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 36799999999999999999999999999999876
No 486
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.06 E-value=0.19 Score=51.79 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
-..|.|||+|..|..+|..++..|++|+++|...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999876
No 487
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=92.04 E-value=0.27 Score=44.28 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...|+|||.|..|-+.|..|+++|+.|.++.++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~ 36 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDR 36 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecC
Confidence 4579999999999999999999999999998876
No 488
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.03 E-value=0.25 Score=42.03 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
...|+|||+|-.|+++|..|+..|. +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5789999999999999999999997 599999886
No 489
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.86 E-value=0.24 Score=40.17 Aligned_cols=34 Identities=38% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
...++|+|=|..|-.+|..|+..|.+|+|.|.++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4679999999999999999999999999999987
No 490
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.83 E-value=0.26 Score=42.86 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=29.4
Q ss_pred cEEEEC-CCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCG-GGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIG-aGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|.||| +|..|.++|..|++.|++|+++++..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998865
No 491
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.82 E-value=0.24 Score=45.00 Aligned_cols=33 Identities=39% Similarity=0.507 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
..|.|||||..|...|..++..|++|+++|..+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 579999999999999999999889999999985
No 492
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.80 E-value=0.22 Score=48.46 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC
Q 014198 54 KHVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS 86 (429)
Q Consensus 54 ~dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~ 86 (429)
.+|.|||.|.+|+.+|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 36999999999999999999984 8899999875
No 493
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.77 E-value=0.35 Score=44.48 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKG--AAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G--~~V~lie~~~ 86 (429)
+|+|||+|-+|.++|+.|+..| .++.|+|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5899999999999999999999 5799999976
No 494
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.75 E-value=0.37 Score=38.55 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=29.1
Q ss_pred cEEEECC-CHHHHHHHHHHHHCC--CcEEEEcCCC
Q 014198 55 HVAVCGG-GIIGVCTAYFLAKKG--AAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGa-Gi~Gl~~A~~L~~~G--~~V~lie~~~ 86 (429)
+|.|||+ |-+|.++|+.|...+ .++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 999999999999987 4799999986
No 495
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.70 E-value=0.35 Score=41.78 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 52 SKKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 52 ~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
....|+|||||-+++.=+..|.+.|.+|+||...-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 35689999999999999999999999999998764
No 496
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.69 E-value=0.22 Score=45.67 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~ 86 (429)
+|+|+|+|-.|.-.|+.|++.|..|+++-|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 68999999999999999999998888888765
No 497
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.29 Score=44.82 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcCCC-Ccc
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKGAAVTLIEKSS-VAC 89 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G~~V~lie~~~-~~~ 89 (429)
.+||+|+|-|+.=+.++..|+..|.+|+.||+++ .|+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 6999999999999999999999999999999999 544
No 498
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.65 E-value=0.24 Score=43.19 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=48.0
Q ss_pred ccccCCCCCCCcc-CcceEEEeeccccccceeeeecCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEE
Q 014198 3 ATLLAPSSAPTYL-PGLRLTLIGSRKLSKTTTFINCSAAQASPPMDGQRHSKKHVAVCGGGIIGVCTAYFLAKKGAAVTL 81 (429)
Q Consensus 3 ~~~~a~g~~p~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGaGi~Gl~~A~~L~~~G~~V~l 81 (429)
.|+|+||++|... .|.+-.++..|+-.....++..- .+..+|+|+|-|-+.++.+++|. +.+|+.
T Consensus 95 kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl------------~kaK~VlilgnGgia~El~yElk--~~nv~w 160 (334)
T KOG2755|consen 95 KLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKL------------VKAKIVLILGNGGIAMELTYELK--ILNVTW 160 (334)
T ss_pred EEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHH------------hhcceEEEEecCchhHHHHHHhh--cceeEE
Confidence 5789999999887 44232355665533333322111 45679999999999999999875 478888
Q ss_pred EcCCC
Q 014198 82 IEKSS 86 (429)
Q Consensus 82 ie~~~ 86 (429)
.-+..
T Consensus 161 ~ikd~ 165 (334)
T KOG2755|consen 161 KIKDE 165 (334)
T ss_pred Eecch
Confidence 87776
No 499
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.65 E-value=0.56 Score=38.09 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcCCC
Q 014198 53 KKHVAVCGGGIIGVCTAYFLAKKG-AAVTLIEKSS 86 (429)
Q Consensus 53 ~~dvvIIGaGi~Gl~~A~~L~~~G-~~V~lie~~~ 86 (429)
..+++|||+|..|.+.|..|++.| .+|+++++..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 467999999999999999999986 7899998875
No 500
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.60 E-value=0.31 Score=42.64 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-cEEEEcCCC
Q 014198 55 HVAVCGGGIIGVCTAYFLAKKGA-AVTLIEKSS 86 (429)
Q Consensus 55 dvvIIGaGi~Gl~~A~~L~~~G~-~V~lie~~~ 86 (429)
+|+|||+|-.|+.++..|+..|. +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999996 799999886
Done!