BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014199
(429 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis
thaliana GN=At5g56900 PE=2 SV=1
Length = 596
Score = 603 bits (1556), Expect = e-172, Method: Compositional matrix adjust.
Identities = 292/428 (68%), Positives = 345/428 (80%), Gaps = 8/428 (1%)
Query: 3 VGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 62
VGISDSS +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK
Sbjct: 176 VGISDSSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKN 235
Query: 63 KQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWR 122
KQKF+HALSPTP +TMS A++S K P TTL PY D + SK KRP+DS SDSQYWR
Sbjct: 236 KQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDSQYWR 292
Query: 123 YDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKC 182
YDV KRQK G G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGKC
Sbjct: 293 YDVP-KRQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKC 350
Query: 183 EKGPECSYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCAL 241
EKGPECSYKH Q++ S QR RSENA NRSKECWFCLSSPSVESHLIVSVGE +YCAL
Sbjct: 351 EKGPECSYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCAL 408
Query: 242 PKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRG 301
PKG LVEDH+L+IP+EH+PNT+ SPE E EL R+QN L YK+QG +AVFFE +SKR
Sbjct: 409 PKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRV 468
Query: 302 THANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFY 361
+HANLQ VP+P+S+A + +IF+LAAEKLGFK + K + S+DGR+ L+ +++ FY
Sbjct: 469 SHANLQVVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFY 528
Query: 362 VELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKR 421
VELP+GTVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK+
Sbjct: 529 VELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQ 588
Query: 422 FEAFDPNQ 429
F+ FDP Q
Sbjct: 589 FQEFDPCQ 596
>sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa
subsp. japonica GN=Os09g0364000 PE=2 SV=1
Length = 613
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/426 (59%), Positives = 321/426 (75%), Gaps = 4/426 (0%)
Query: 5 ISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQ 64
ISD D V+ELVAEIKPRYHIAGSKGVFYAREPY + A HVTRF+GLA VGNKEKQ
Sbjct: 191 ISDPHGYDPVVAELVAEIKPRYHIAGSKGVFYAREPYVSDSAAHVTRFIGLANVGNKEKQ 250
Query: 65 KFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYD 124
KFIHA+SPTPA+TMS+ DI + PNTTLSPY + +E KRP++ +D QYWRYD
Sbjct: 251 KFIHAISPTPASTMSSVDIHARPPNTTLSPYISPAKSVPVEETPKRPAED-ADLQYWRYD 309
Query: 125 VSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEK 184
V K+Q+HG G+++CFKF SGSCPRG KCN+RHD +ARE R VC DF+ KGKCEK
Sbjct: 310 V--KKQRHGEAGGNRLCFKFTSSGSCPRGSKCNYRHDEEAREHYNRNVCFDFLNKGKCEK 367
Query: 185 GPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKG 244
GPEC + HSL ++ + R + + CWFCLSSP VESHL++S+GE YYCAL KG
Sbjct: 368 GPECRFAHSLSDEGAVRDTKPRSERRRVESSCWFCLSSPDVESHLVISIGEGYYCALAKG 427
Query: 245 PLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHA 304
PLV +HVLVIPVEH +T+ E E ELGR++++L Y++ QGK A++FEW+S++ HA
Sbjct: 428 PLVPNHVLVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWVSQQSRHA 487
Query: 305 NLQAVPIPTSKAAAVQDIFNLAAEKLGFKF-LATKSSKSSDGRRSLRAQFDRNCSFFYVE 363
NLQAVP+P SKA++V+ IF+LAA++LGF+F + ++ R LR++ D S FYVE
Sbjct: 488 NLQAVPVPLSKASSVKKIFHLAAQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVE 547
Query: 364 LPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFE 423
LPEG+VL HL++ NE+FPAQFGREVLAGLL++AD+ADWRNC + KEEE +MV+DFK+ F
Sbjct: 548 LPEGSVLLHLVDSNEKFPAQFGREVLAGLLSMADRADWRNCKVSKEEEIQMVDDFKQGFR 607
Query: 424 AFDPNQ 429
FDP +
Sbjct: 608 EFDPAE 613
>sp|Q5RGJ5|C19L1_DANRE CWF19-like protein 1 OS=Danio rerio GN=cwf19l1 PE=2 SV=1
Length = 544
Score = 189 bits (480), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 200/425 (47%), Gaps = 76/425 (17%)
Query: 13 STVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLAPVGNKEKQKFI 67
S++++L ++KPRYH AG +GV Y R PY N + HV+RF+ LA V N K+K++
Sbjct: 180 SSIADLADKLKPRYHFAGLEGVHYERLPYRNHVVLQENTQHVSRFIALATVNNPAKKKYL 239
Query: 68 HALSPTPAATMSAADISMKTPNTTLSPY-TFLDQGSHSKEAAKRPSDSVSDSQYWRYDVS 126
+A + P M + ++ + + T +PY + G +++A
Sbjct: 240 YAFNIIPMKNMDSTELVKQPQDVTENPYRKLMKDGKKERQSASM---------------- 283
Query: 127 QKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGP 186
TDA+E+ D +K P
Sbjct: 284 -----------------------------------TDAQEEPASQFFFDL-----GQKNP 303
Query: 187 ECSYKHSLQND-DSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGP 245
+ + Q+D D H+ + CWFCL+SP VE HL++S+G + Y AL KG
Sbjct: 304 QRQHGRKRQSDGDRPNQHKQPRRPPQPTGPCWFCLASPEVEKHLVISIGTHCYMALAKGG 363
Query: 246 LVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHAN 305
L DHVL++P+ H + + + E +E+ +++++ + K++GK V FE + R H
Sbjct: 364 LTPDHVLLLPIGHYQSVVDLASEVVEEMEKYKSAFKKFCKSKGKRCVLFE-RNYRSQHLQ 422
Query: 306 LQAVPIPTSKAAA--VQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVE 363
LQAVP+P K + +++ F AE+ + + + L+ +FYVE
Sbjct: 423 LQAVPVPMEKCSTEDIKEAFMTQAEEQQMELMEIPA------HTDLKQIAPPGTPYFYVE 476
Query: 364 LPEGTVLSHLIEENERFPAQFGREVLA--GLLNIADKADWRNCMLGKEEETKMVEDFKKR 421
L G L + I++N FP QFGREVLA ++NI ++DWR C + +EEE + +
Sbjct: 477 LDTGDKLFYRIKKN--FPLQFGREVLASEAVMNIPMRSDWRECKISREEEEDQAKQVRSD 534
Query: 422 FEAFD 426
+E FD
Sbjct: 535 YEPFD 539
>sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1
Length = 540
Score = 189 bits (479), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 210/424 (49%), Gaps = 79/424 (18%)
Query: 13 STVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLAPVGNKEKQKFI 67
+ +S L +KPRYH A +G Y R PY N +A HV+RF+ LA VGN +K+K+I
Sbjct: 181 ALISNLAFNLKPRYHFAALEGENYERLPYRNHLVLQENAQHVSRFISLASVGNLDKKKYI 240
Query: 68 HALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQ 127
+A + P MS DI+ + K+P D V+++ Y + D
Sbjct: 241 YAFNIVP---MSLTDIA---------------------DLVKQPLD-VTENPYRKSDKDT 275
Query: 128 KRQK-HGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGP 186
+ K + + ++ +F + + P+G+K TD KG +
Sbjct: 276 PKSKGNKSAEEEEPTQQFFFDLNKPQGKK----RQTDG--------------KGGRQSQA 317
Query: 187 ECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPL 246
+ KH + CWFCL+SP VE HL+VS+G+ Y AL KG L
Sbjct: 318 KQPRKH-----------------PQPTGPCWFCLASPEVEKHLVVSIGDNCYVALAKGGL 360
Query: 247 VEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANL 306
+ DHVL++P+ H +T+ S + KE+ +++ +L ++K +GK V FE + + H L
Sbjct: 361 MSDHVLILPIGHYQSTVDLSSDVVKEVEQYKAALRTFFKTKGKRYVMFER-NYKSQHLQL 419
Query: 307 QAVPIPTS--KAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVEL 364
Q VP+P S +++ F L A++ G + L + SD ++ + +FYVEL
Sbjct: 420 QVVPLPLSCCTTEDIKETFILQAQEQGMELLEI--PEHSDIKQIAQP----GTPYFYVEL 473
Query: 365 PEGTVLSHLIEENERFPAQFGREVLA--GLLNIADKADWRNCMLGKEEETKMVEDFKKRF 422
G L H I+++ FP QFGREVLA +LNI +ADW++C + EE + + F+ F
Sbjct: 474 DSGEKLFHRIKKH--FPLQFGREVLASEAILNIPTRADWKDCKSSRAEEEDLTKTFRDAF 531
Query: 423 EAFD 426
E FD
Sbjct: 532 EPFD 535
>sp|O16216|C19L1_CAEEL CWF19-like protein 1 homolog OS=Caenorhabditis elegans GN=F17A9.2
PE=3 SV=2
Length = 533
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 128/419 (30%), Positives = 192/419 (45%), Gaps = 75/419 (17%)
Query: 15 VSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLAPVGNKEKQKFIHA 69
+S+L A +KPRYH AG GV Y R+PY N A H TRF+GLA +GN EKQK+++A
Sbjct: 175 LSKLAAHLKPRYHFAGL-GVHYERQPYRNHRVLLEPARHTTRFIGLAAIGNPEKQKWLYA 233
Query: 70 LSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKR 129
+ P M +++ + PN + PY L + +KE R + + + +Y
Sbjct: 234 CNVKPMRKMEKEELTAQPPNASEFPYRELLEEIAAKETLSRMNGNGQRPEGSQYRFEMGG 293
Query: 130 QKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECS 189
+ G G+G K RH+ + G K P
Sbjct: 294 AEDGAGNGRK-------------------RHNDGGND-------------GPRNKQPVGP 321
Query: 190 YKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVED 249
L N D+++ HL+V++G Y A+PKGPL ED
Sbjct: 322 CWFCLSNVDAEK--------------------------HLVVAIGNKCYAAMPKGPLTED 355
Query: 250 HVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAV 309
HV+V+ V H+ + +S E E+ +F+++ + QGK V FE + R H +Q V
Sbjct: 356 HVMVLSVGHIQSQVSAPVEVRDEIEKFKSAFTLMANKQGKALVTFER-NFRTQHLQVQMV 414
Query: 310 PIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTV 369
I S + A++ F AA GF+ + + SL + C +F ELP+G+
Sbjct: 415 MIDKSSSKALKSSFTTAAACAGFELVTMGPDE------SLLDMVNEGCPYFVAELPDGSK 468
Query: 370 LSHLIEENERFPAQFGREVLAG--LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 426
L + FP FGREVLA +L+ DK DW+ C+L KE+E ++V K F+ FD
Sbjct: 469 L--FTRSMKGFPLHFGREVLASTPILDCEDKVDWKACVLAKEKEVELVNKLKSDFKPFD 525
>sp|Q8CI33|C19L1_MOUSE CWF19-like protein 1 OS=Mus musculus GN=Cwf19l1 PE=2 SV=2
Length = 537
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 129/215 (60%), Gaps = 13/215 (6%)
Query: 216 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 275
CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H + + S E +E+ +
Sbjct: 327 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 386
Query: 276 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 333
++ +L ++K++GK V FE + R H LQ +P+P S A ++D F A++ +
Sbjct: 387 YKATLQRFFKSRGKRCVLFER-NYRSHHLQLQVIPVPLSCCATDDIKDAFITQAQEQQIE 445
Query: 334 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--G 391
L + SD ++ + ++FYVEL G L H I++N FP QFGREVLA
Sbjct: 446 LLEI--PEHSDIKQIAQP----GAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 497
Query: 392 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 426
+LNI +KADWR C K+EE + F+K FE FD
Sbjct: 498 ILNIPEKADWRQCQTSKDEEEALARRFRKDFEPFD 532
>sp|Q5R8R4|C19L1_PONAB CWF19-like protein 1 OS=Pongo abelii GN=CWF19L1 PE=2 SV=1
Length = 538
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 130/215 (60%), Gaps = 13/215 (6%)
Query: 216 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 275
CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H + + S E +E+ +
Sbjct: 328 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 387
Query: 276 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 333
++ +L ++K++GK V FE + + H LQ +P+P S A ++D F A++ +
Sbjct: 388 YKATLRRFFKSRGKRCVVFE-RNYKSHHLQLQVIPVPVSCCATDDIKDAFITQAQEQQIE 446
Query: 334 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--G 391
L + SD ++ + ++FYVEL G L H I++N FP QFGREVLA
Sbjct: 447 LLEI--PEHSDIKQIAQP----GAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 498
Query: 392 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 426
+LN+ DK+DWR C + KE+E + F+K FE +D
Sbjct: 499 ILNVPDKSDWRQCQISKEDEETLARCFRKDFEPYD 533
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 13 STVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLAPVGNKEKQKFI 67
+ VS L +KPRYH A + +Y R PY N +A H TRF+ LA VGN EK+K++
Sbjct: 179 ALVSSLATGLKPRYHFAALEKTYYERLPYRNHIVLQENAQHATRFIALANVGNPEKKKYL 238
Query: 68 HALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQ 127
+A S P M AA++ + P+ T +PY Q + + + P + + ++ + Q
Sbjct: 239 YAFSIVPMKLMDAAELVKQPPDVTENPYRKSGQEASTGKQILAPVEESACQFFFDLNEKQ 298
Query: 128 KRQKHGGGDGDK 139
R++ G K
Sbjct: 299 GRKRSSTGRDSK 310
>sp|Q69YN2|C19L1_HUMAN CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2
Length = 538
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 130/215 (60%), Gaps = 13/215 (6%)
Query: 216 CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGR 275
CWFCL+SP VE HL+V++G + Y AL KG L +DHVL++P+ H + + S E +E+ +
Sbjct: 328 CWFCLASPEVEKHLVVNIGTHCYLALAKGGLSDDHVLILPIGHYQSVVELSAEVVEEVEK 387
Query: 276 FQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAA--VQDIFNLAAEKLGFK 333
++ +L ++K++GK V FE + + H LQ +P+P S + ++D F A++ +
Sbjct: 388 YKATLRRFFKSRGKWCVVFE-RNYKSHHLQLQVIPVPISCSTTDDIKDAFITQAQEQQIE 446
Query: 334 FLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA--G 391
L + SD ++ + ++FYVEL G L H I++N FP QFGREVLA
Sbjct: 447 LLEI--PEHSDIKQIAQP----GAAYFYVELDTGEKLFHRIKKN--FPLQFGREVLASEA 498
Query: 392 LLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 426
+LN+ DK+DWR C + KE+E + F+K FE +D
Sbjct: 499 ILNVPDKSDWRQCQISKEDEETLARRFRKDFEPYD 533
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 13 STVSELVAEIKPRYHIAGSKGVFYAREPYSN-----VDAVHVTRFLGLAPVGNKEKQKFI 67
+ VS L +KPRYH A + +Y R PY N +A H TRF+ LA VGN EK+K++
Sbjct: 179 ALVSSLATGLKPRYHFAALEKTYYERLPYRNHIILQENAQHATRFIALANVGNPEKKKYL 238
Query: 68 HALSPTPAATMSAADISMKTPNTTLSPY 95
+A S P M AA++ + P+ T +PY
Sbjct: 239 YAFSIVPMKLMDAAELVKQPPDVTENPY 266
>sp|Q10414|MU161_SCHPO CWF19-like protein mug161 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mug161 PE=1 SV=1
Length = 561
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 119/441 (26%), Positives = 188/441 (42%), Gaps = 97/441 (21%)
Query: 15 VSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHV-----TRFLGLAPVGNKEKQKFIHA 69
++ L A P+Y V+Y REPY N A++V T F+ LAP N + +KF +A
Sbjct: 187 LAALAANCMPQYFFVPGP-VYYEREPYKNSAAINVNTGTVTHFVALAPFKNSKNEKFSYA 245
Query: 70 LSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPS-DSVSDSQYWRYDVSQK 128
+ P ++ + PN T SP+ H KR S D + Q ++ S+
Sbjct: 246 FTLYP---LTTEYMQPAPPNCTASPF------EHRPIPLKRASEDQIIPQQTNKFHKSKS 296
Query: 129 RQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC 188
++ N H +++
Sbjct: 297 STA-------------LFKSKKDSSSSLNKMHKSES------------------------ 319
Query: 189 SYKHSLQNDDSQRTHRSENASA---NRSK----ECWFCLSSPSVESHLIVSVGEYYYCAL 241
HS N+ H+SE+ ++ RSK C+FCLS+P+V HLIV++G Y AL
Sbjct: 320 ---HSALNN----LHKSESGTSLNNRRSKVGPGSCFFCLSNPNVALHLIVAIGNEAYMAL 372
Query: 242 PKGPLV-----------EDHVLVIPVEHVPNTISTSPECE-----KELGRFQNSLMMYYK 285
PKGPL HVL+IP+ H + +ST + E+ RF+ ++ Y
Sbjct: 373 PKGPLTTTASNTPALASSGHVLIIPIAHA-SALSTLSDTSYEKTLNEMNRFRKAVTDMYN 431
Query: 286 NQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDG 345
+A+ +E G H + Q +PIP + ++ +F A++ G+ F
Sbjct: 432 ACDSDALVYEISRANGVHLHWQMIPIPKISSHRIESVFLEMAKEAGYDF----------E 481
Query: 346 RRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCM 405
R + ++F V LP G +L H ++ ERF QFGR A +L + D+ DWR C+
Sbjct: 482 ERDVEPH---ELNYFRVFLPSGKILIHRLQLRERFDLQFGRRAAAKILGLEDRVDWRKCV 538
Query: 406 LGKEEETKMVEDFKKRFEAFD 426
++EE E FK F+ +D
Sbjct: 539 QTEDEEKAESEAFKMCFKPYD 559
>sp|A1Z8J0|C19L1_DROME CWF19-like protein 1 homolog OS=Drosophila melanogaster GN=CG7741
PE=2 SV=1
Length = 545
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 13/232 (5%)
Query: 197 DDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPV 256
D+++R R + K CWFCLSSP VE HLI++VGE++Y AL KGP+ + HV+++
Sbjct: 321 DNNKRDKRPRIPQIEQDK-CWFCLSSPDVEKHLIITVGEHFYLALAKGPINKHHVMILST 379
Query: 257 EHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKA 316
+HVP SP+ KEL +F+ +L ++K G+ F E K H + A+ A
Sbjct: 380 KHVPCAAQLSPDDWKELNKFKAALRKFFKTLGQVVCFTERHYK-SVHLQINALAFEEGYA 438
Query: 317 AAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEE 376
++ F AE+ +F ++ + D + L +F ELP+ + L + +
Sbjct: 439 WKIKHSFEDKAEEFNLEF---ETLPALDSEKMLPEM----GPYFLAELPDDSTL--ITRQ 489
Query: 377 NERFPAQFGREVLA--GLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFD 426
+ FP F R+V LLN +K +W++C+L K+EE VEDF+K F FD
Sbjct: 490 MKHFPIHFARDVFCSENLLNCDEKVNWKDCLLDKDEEVAYVEDFRKAFAPFD 541
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 4 GISDSSNTDST--VSELVAEIKPRYHIAGSKGVFYAREPY-----SNVDAVHVTRFLGLA 56
G+ + N ++ VS L EIKPRYH G Y P+ TRF+ LA
Sbjct: 188 GMQEKENATASKLVSFLCREIKPRYHFCAINGTHYESAPFRMPKDETTQFELCTRFISLA 247
Query: 57 PVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVS 116
VGN EK K+I+ALS P D++ KT N P+ LD G A +DS
Sbjct: 248 EVGNAEKAKYIYALSLKPVDKSRLLDLAQKTTNEIPCPFIGLDLG-----GAIGKNDSSE 302
Query: 117 DSQYWRYDVSQKRQKHGGGDGDK 139
+ QY+ YD+ R+K GGD +K
Sbjct: 303 NRQYF-YDMDGGRRKRQGGDNNK 324
>sp|P53255|DRN1_YEAST CWF19-like protein DRN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DRN1 PE=1 SV=1
Length = 507
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 22/233 (9%)
Query: 216 CWFCLSSPSVESHLIVSVGEYYYCALPKGPL--------VEDHVLVIPVEHVPNT-ISTS 266
C FC S+P++E H+I+S+G+ Y KGPL + H L+IP+EH+P S +
Sbjct: 269 CHFCFSNPNLEDHMIISIGKLVYLTTAKGPLSVPKGDMDISGHCLIIPIEHIPKLDPSKN 328
Query: 267 PECEKELGRFQNSLM-MYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKA----AAVQD 321
E + + ++ SL+ M Y + FE S+R H + Q +P+P +A+
Sbjct: 329 AELTQSILAYEASLVKMNYIKFDMCTIVFEIQSERSIHFHKQVIPVPKYLVLKFCSALDR 388
Query: 322 IFNLAAEKLG----FKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEEN 377
+ EK +F S S + Q + F E PE +L N
Sbjct: 389 QVHFNNEKFTRNAKLEFQCYDSHSSKQYVDVINNQSNNYLQFTVYETPEADPKIYLATFN 448
Query: 378 --ERFPAQFGREVLAGLLNIADKADWRN--CMLGKEEETKMVEDFKKRFEAFD 426
E QFGR VLA LLN+ + W + C+ K++ET E F+K + +D
Sbjct: 449 ASETIDLQFGRRVLAFLLNLPRRVKWNSSTCLQTKQQETIEAEKFQKAYRTYD 501
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 14 TVSELVAEIKPRYHIAGSKGV-FYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSP 72
V EL +++ RYH A S + FY EP+ + ++RFL + G+ +K +
Sbjct: 146 VVDELAKKLQARYHFAFSDEINFYELEPFQ-WERERLSRFLNIPKYGSGKKWAY------ 198
Query: 73 TPAATMSAADISMKT----PNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQY 120
A M D +K PN +PY + S+ KRP ++ +++ +
Sbjct: 199 --AFNMPIGDNELKDEPEPPNLIANPYNSVVTNSN-----KRPLETETENSF 243
>sp|Q9VXT5|C19L2_DROME CWF19-like protein 2 homolog OS=Drosophila melanogaster GN=CG9213
PE=1 SV=2
Length = 687
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 8/232 (3%)
Query: 174 LDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSV 233
LD I K K S + + R H A+ + C C S ++ L+VS+
Sbjct: 434 LDDIFADKVRKQISASDAEKREMQSAIREHEKLVATLDN---CERCFDSAKLDKQLLVSL 490
Query: 234 GEYYYCALP-KGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAV 292
G+ Y +LP L H ++ ++HVP + +E+ F+ +L + + ++ V
Sbjct: 491 GDKIYLSLPWYMGLQSGHCILTTLQHVPCCTQLDEDAWEEISNFRKALTRMFAARRQDVV 550
Query: 293 FFEWLSK--RGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLR 350
F+E +K R H ++ +PIP S+ F A E+ ++ K S ++SLR
Sbjct: 551 FYEIANKLHRRPHLSVHCIPIPASQGEMAPFYFKKAIEESEQEWCINKQLVSL-RQKSLR 609
Query: 351 AQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWR 402
A + + +V + +H+IE+ +RFPA F +E+L G+L + A WR
Sbjct: 610 AAIPKGLPYVWVHFGMDSGFAHVIEDEDRFPANFAQEILGGMLELNPNA-WR 660
>sp|Q10946|C19L2_CAEEL CWF19-like protein 2 homolog OS=Caenorhabditis elegans
GN=B0361.2/B0361.1 PE=2 SV=2
Length = 460
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 108/217 (49%), Gaps = 10/217 (4%)
Query: 215 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVED-HVLVIPVEHVPNTISTSPECEKEL 273
+C C+ S ++ H I++VG Y A+ + ++D H++++P +H +TI E+
Sbjct: 238 DCSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDEHLIIVPTQHCSSTIQLDENVWDEM 297
Query: 274 GRFQNSLMMYYKNQGKEAVFFEWLSKR---GTHANLQAVPIPTSKAAAVQDIFNLAAEKL 330
++ L+ +K+Q ++ +FFE +S+ H ++ VP+ F A +
Sbjct: 298 RLWRKGLVAVWKSQNRDCIFFE-MSRHVDSNPHVFIECVPVEQEIGDMASIYFKKAINEC 356
Query: 331 GFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLA 390
+++ K + + LR Q + S+F V+ +H+IE ++ FP+ F E++A
Sbjct: 357 EGEYMDNKKLIET---KDLRRQIPKGFSYFAVDFGLSNGFAHVIESHDHFPSTFATEIIA 413
Query: 391 GLLNIADKADWRNCMLGKEEETK-MVEDFKKRFEAFD 426
G+L++ K WR + + K E+FKK +E D
Sbjct: 414 GMLDLPPKK-WRKRETDEMSKQKSRAENFKKLWEPVD 449
>sp|Q3LSS0|C19L2_DANRE CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1
Length = 960
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 8/222 (3%)
Query: 210 ANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKG-PLVEDHVLVIPVEHVPNTISTSPE 268
A R ++C C S + HLI++VG Y LP L E H L++PV+H +
Sbjct: 736 AGRMEKCPHCFDSAELPKHLIIAVGTKVYLCLPNSVSLTEGHCLIVPVQHHTAATGLDED 795
Query: 269 CEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKRGTHANLQAVPIPTSKAAAVQDIFNLA 326
E+ F+ +L+ +++Q + VF E KR H + VP+P F A
Sbjct: 796 IWGEIQMFRRALVRMFESQELDCVFLETHMNPKRHLHMVYECVPMPRELGDMAPIYFKKA 855
Query: 327 AEKLGFKFLATKSSKSSD-GRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFG 385
+ ++ K K D +R +R R +F V+ +H+IE ++FP FG
Sbjct: 856 IMESDEEWAMNK--KVVDLSKRDIRQAVPRGLPYFSVDFGLQGGFAHVIENEQKFPHYFG 913
Query: 386 REVLAGLLNIADKADWRNCMLGK-EEETKMVEDFKKRFEAFD 426
+E+L G+L++ + WR + +++ K V F + ++ FD
Sbjct: 914 KEILGGMLDLEPRR-WRKPIRENFDDQRKKVLKFAQWWKPFD 954
>sp|Q28C44|C19L2_XENTR CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1
Length = 922
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 11/229 (4%)
Query: 203 HRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKG-PLVEDHVLVIPVEHVPN 261
HRS A+ + C FC + + HLIV++G Y LP L E H L++P++H
Sbjct: 696 HRSLTATMEK---CRFCFDNAELPKHLIVAIGTKVYLCLPNHLSLTEGHCLIVPLQHHTA 752
Query: 262 TISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKRGTHANLQAVPIPTSKAAAV 319
+ + E+ F+ +L+ ++++G + VF E +++ H + +P+P
Sbjct: 753 STLLDEDIYNEIQVFRKALVRMFESKGLDCVFLESNIYARKRLHLVYECIPLPKEVGDMA 812
Query: 320 QDIFNLAAEKLGFKFLATKSSKSSD-GRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENE 378
F A + ++ K K D + +R + +F V+ +H+IE+
Sbjct: 813 PIYFKKAIMESDEEWSMNK--KLIDLSTKDIRRAVPKGLPYFSVDFGLQGGYAHVIEDEH 870
Query: 379 RFPAQFGREVLAGLLNIADKADWRNCMLGK-EEETKMVEDFKKRFEAFD 426
+FP+ FG+E++ G+L++ + WR + + E++ K V +F + ++ FD
Sbjct: 871 KFPSYFGKEIIGGMLDLEPRI-WRKAVRERFEDQRKKVLEFAQWWKPFD 918
>sp|Q2TBE0|C19L2_HUMAN CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=4
Length = 894
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 10/204 (4%)
Query: 203 HRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPK-GPLVEDHVLVIPVEHVPN 261
HRS A + C +C S HLIV++G Y LP L E H L++P++H
Sbjct: 665 HRSLAAQMEK---CLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRA 721
Query: 262 TISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKRGTHANLQAVPIPTSKAAAV 319
+ +E+ F+ SL+ ++++G + +F E K+ H + +P+P
Sbjct: 722 ATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQYHMVYECIPLPKEVGDMA 781
Query: 320 QDIFNLAAEKLGFKFLATKSSKSSD-GRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENE 378
F A + ++ K K D + +R R +F V+ +H+IE+
Sbjct: 782 PIYFKKAIMESDEEWSMNK--KLIDLSSKDIRKSVPRGLPYFSVDFGLHGGFAHVIEDQH 839
Query: 379 RFPAQFGREVLAGLLNIADKADWR 402
+FP FG+E++ G+L+I + WR
Sbjct: 840 KFPHYFGKEIIGGMLDIEPRL-WR 862
>sp|Q8BG79|C19L2_MOUSE CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1
Length = 887
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 9/218 (4%)
Query: 191 KHSLQNDDSQRTHR-SENAS-ANRSKECWFCLSSPSVESHLIVSVGEYYYCALPK-GPLV 247
+H + ++SQR +E+ S A + +C +C S HLIV++G Y LP L
Sbjct: 641 EHLGKKEESQRRRAIAEHQSLAAKMAKCLYCFDSSQFPKHLIVAIGVKVYLCLPSFQSLT 700
Query: 248 EDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLS--KRGTHAN 305
E H ++P++H + +E+ F+ SL+ ++++ + +F E K+ H
Sbjct: 701 EGHCFIVPLQHHQAATVLDEDVWEEIQMFRKSLVKMFEDKELDCIFLETNMGLKKHYHMV 760
Query: 306 LQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSD-GRRSLRAQFDRNCSFFYVEL 364
+ +P+P F A + ++ K K D + +R R +F V+
Sbjct: 761 YECIPLPKEVGDMAPIYFKKAIMESDEEWSMNK--KLIDLSSKDIRKSVPRGLPYFAVDF 818
Query: 365 PEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWR 402
+H+IE+ RFP FG+E++ G+L++ + WR
Sbjct: 819 GLQGGFAHIIEDQYRFPHYFGKEIIGGMLDLEPRL-WR 855
>sp|Q09909|CWF19_SCHPO Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf19 PE=1 SV=1
Length = 639
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 216 CWFCLSSPSVESHLIVSVGEYYYCALPKGP-LVEDHVLVIPVEHVPNTISTSPECEKELG 274
C CL+ + ++S+ Y +LP P L + H L++P H NT+S + E+
Sbjct: 412 CPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSCDEDEWDEIR 471
Query: 275 RFQNSLMMYYKNQGKEAVFFEWL--SKRGTHANLQAVP----IPTSKAAAVQDIFNLAAE 328
F + + + + +F+E +R H ++ +P I + A ++ + + E
Sbjct: 472 NFMKCIALMFDSMNLGVIFYENAPSPQRYMHTAIECIPVSKRILSLAPAYFREALSTSDE 531
Query: 329 KLG--FKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPA--QF 384
+ K + T G+ + R + +F+V H++E+ + + Q
Sbjct: 532 EWSQHRKIIDTLEGSKKYGKWAFRKMMVKELGYFHVWFSIDGGYGHVVEDEKAWGRHDQV 591
Query: 385 GREVLAGLLN-----IADKADWRNCMLGKEEETKMVEDFKKRFEAFD 426
R+V A +LN I K W GK++ + + F+ RFE FD
Sbjct: 592 PRQVFASMLNLPPEVIRRKGSW----TGKKDPREDM--FRSRFEKFD 632
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 143 KFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRT 202
KF +G+C GE C F H + R +C + +KG C+ GP+C+ H+L + +
Sbjct: 48 KFFRNGTCTAGENCPFSHSLETE----RPIC-KYFLKGNCKFGPKCALSHALPGNTNLPN 102
Query: 203 HRSENASA 210
S N A
Sbjct: 103 GTSTNTMA 110
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 137 GDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHS 193
G ++C K+ G C +G+ C F HD + ++ + VC + ++G C KG C Y HS
Sbjct: 272 GKQIC-KYFLEGRCIKGDHCKFNHDAELEKK--KEVC-KYYLQGYCTKGENCIYMHS 324
>sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp.
japonica GN=Os01g0256800 PE=2 SV=1
Length = 1007
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 138 DKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKH 192
++MC F +GSC RG+ C+F H + A R +C F+ C G CS+ H
Sbjct: 726 NEMCV-FFLNGSCNRGDTCHFSHSSRAP----RPICKFFLTLQGCRNGNSCSFSH 775
>sp|Q6C4K3|DUS3_YARLI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=DUS3 PE=3 SV=1
Length = 622
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 136 DGDKMC---FKFIYSGS---CPRGEKCNFRHDT----DAREQCLRGVCLDFIIKGKCEKG 185
D KMC +F GS C G+KC F HD +++ + + GVC F + G+C +G
Sbjct: 89 DAIKMCSSALQFKEDGSPQECSYGDKCKFEHDLQKYLESKPKDIEGVCPVFDLTGQCPQG 148
Query: 186 PECSYKHSLQNDDSQRTHRSENASAN 211
+C + S ++ + + E AN
Sbjct: 149 YKCRWLSSHRDSEGKLLVDEEKKKAN 174
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 137 GDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHS 193
G ++C K+ G C +G++C F HD + ++ + +C F ++G C KG C Y H+
Sbjct: 274 GKQIC-KYFLEGRCIKGDQCKFDHDAELEKR--KEIC-KFYLQGYCTKGENCIYMHN 326
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRH---DTDAREQCLR---GVCLDFIIKGKCEKGPECSYKH 192
++C F GSCP G KC F H + ++ C C+++ G C G C +KH
Sbjct: 173 ELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWEKLGYCPYGRRCCFKH 232
Query: 193 SLQND 197
ND
Sbjct: 233 GDDND 237
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C F SG+C GEKC F H R +C F G C GP C H
Sbjct: 157 ELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC---H 213
Query: 193 SLQNDDSQRTHRSENASAN 211
+ N D +R S AS +
Sbjct: 214 FIHNADERRPAPSGGASGD 232
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 150 CPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENAS 209
C G+ C + HD + R VC+ F+ +GKCE G EC Y H R R E
Sbjct: 107 CKMGDNCEYTHDFNLRTM---PVCIWFVKQGKCELGGECLYFHP-------RDRRVECPD 156
Query: 210 ANRSKECWFCLSSPSVESHLI 230
NR FC+ P+ I
Sbjct: 157 YNRG----FCVLGPNCPRKHI 173
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 150 CPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENAS 209
C G+ C + HD + R VC+ F+ +GKCE G EC Y H R R E
Sbjct: 107 CKMGDNCEYTHDFNLRTM---PVCIWFVKQGKCELGGECLYFHP-------RDRRVECPD 156
Query: 210 ANRSKECWFCLSSPSVESHLI 230
NR FC+ P+ I
Sbjct: 157 YNRG----FCVLGPNCPRKHI 173
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 99 DQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNF 158
D G E +P+DS ++ + + + G ++C K+ +G CP G++C F
Sbjct: 232 DGGKKGDEQKAQPADSGAELEVY----------NQGMFKTELCNKWEETGDCPYGDQCQF 281
Query: 159 RHDTDAREQCLR------GVCLDFIIKGKCEKGPECSYKHSL 194
H +R VC + C G C ++HSL
Sbjct: 282 AHGVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHFRHSL 323
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLR------GVCLDFIIKGKCEKGPECSYKH 192
++C K+ +G+CP G++C F H +R VC + G C G C ++H
Sbjct: 272 ELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRH 331
Query: 193 SLQNDD 198
S+ D
Sbjct: 332 SITPAD 337
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 24/120 (20%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTD-----------AREQCLRG------------VCLD 175
K+C +++ G C +G C F HDT AR CL+G C +
Sbjct: 433 KVCHFYLH-GKCQQGNLCKFSHDTTPLTKSKPCTHYARGSCLKGDDCPYDHELSKYPCHN 491
Query: 176 FIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGE 235
F+ G C +G +C + H + + T ++ ++A+ E C S + V GE
Sbjct: 492 FMENGMCIRGDKCKFSHVIPTAEGPSTPDAKKSNASSVPEKANCQEQTSRQKTSTVYSGE 551
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 140 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDS 199
+C F+ G CP G KC +H +C DF +G C +G +C H Q S
Sbjct: 755 VCSDFL-KGYCPLGAKCKKKHTL---------LCPDFARRGACPRGAQCQLLHRTQKRHS 804
Query: 200 QR 201
+R
Sbjct: 805 RR 806
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 18/75 (24%)
Query: 127 QKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQC---LRGVCLDFIIKGKC- 182
Q+R+K + C + G C RGE+C + HD + C +RG C G C
Sbjct: 664 QRREKR-----KEYCMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKK--TDGTCP 716
Query: 183 -------EKGPECSY 190
EK P CSY
Sbjct: 717 FSHHVSKEKMPVCSY 731
>sp|Q2UL89|DUS3_ASPOR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=dus3 PE=3 SV=1
Length = 730
Score = 38.5 bits (88), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 43/192 (22%)
Query: 37 AREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYT 96
A P +N + + R G+APV K +FI P AT + PNT +
Sbjct: 46 ASTPDNNANNIAPQRMRGVAPV----KPEFI-----IPRATGTEPQ-----PNTDDAAEA 91
Query: 97 FLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYS-----GSCP 151
+G+ +EA K+ + R S + +K +C I++ G+C
Sbjct: 92 ARHEGAQGQEAGKKKKKKPTGQNTNRTFGSSQDEK-------GLCPSRIFTPEFSPGACQ 144
Query: 152 RGEKCNFRHD--TDARE------QCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTH 203
GEKC F HD T +E GVC + KGKC G +C S H
Sbjct: 145 WGEKCRFEHDLRTYLKEYKRGDLTTFDGVCPVWDAKGKCLSGWKCRLVGS---------H 195
Query: 204 RSENASANRSKE 215
+E +A+ KE
Sbjct: 196 MTERETADGRKE 207
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C F SG C G KC F H Q R +C F ++G+C G C + H
Sbjct: 105 ELCRTFSESGRCRYGAKCQFAHGLGELRQASRHPKYKTELCHKFYLQGRCPYGSRCHFIH 164
Query: 193 SLQNDDSQRTH 203
+ D + H
Sbjct: 165 NPSEDLAAPGH 175
>sp|Q5BF62|DUS3_EMENI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=dus3 PE=3 SV=1
Length = 714
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 136 DGDKMCFKFIYS-----GSCPRGEKCNFRHDTDA------RE--QCLRGVCLDFIIKGKC 182
D +C +YS CP G+KC F HD RE GVC + +GKC
Sbjct: 112 DSKGLCASRVYSPEFSPAECPFGDKCRFEHDLRTYLKEHKREDLNTFNGVCPVWSARGKC 171
Query: 183 EKGPECSY--KHSLQ 195
+ G +C + HS++
Sbjct: 172 DAGWKCRFVGSHSIE 186
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C F SG C G KC F H Q R +C F ++G+C G C + H
Sbjct: 107 ELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIH 166
Query: 193 SLQNDDSQRTH 203
+ D + H
Sbjct: 167 NPSEDLAAPGH 177
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C F SG C G KC F H Q R +C F ++G+C G C + H
Sbjct: 105 ELCRTFSESGRCRYGAKCQFAHGLGELRQPSRHPKYKTELCHKFYLQGRCPYGSRCHFIH 164
Query: 193 SLQNDDSQRTH 203
+ D + H
Sbjct: 165 NPSEDLAAPGH 175
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 24/77 (31%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTD-----------AREQCLRG------------VCLD 175
K C ++ G C G+KC F HDT A + C++G C +
Sbjct: 354 KYCRHYL-KGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDHDLSKYPCNN 412
Query: 176 FIIKGKCEKGPECSYKH 192
FI KG C +G C + H
Sbjct: 413 FITKGFCYRGDSCLFSH 429
>sp|P41000|CPS3_SCHPO Protein cps3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cps3 PE=1 SV=3
Length = 583
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 143 KFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSL 194
KF G+C G+ C F HD + + + +C + KG C+ G +C+ +H L
Sbjct: 42 KFFRQGTCTSGKNCIFSHDLELATE--KTIC-KYFQKGNCKFGSKCALEHVL 90
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 140 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDS 199
+C F+ G CP G KC +H +C DF +G C +G +C H Q
Sbjct: 750 VCSDFL-KGYCPLGAKCKKKHTL---------LCPDFARRGICPRGSQCQLLHRNQKRHG 799
Query: 200 QRT 202
+RT
Sbjct: 800 RRT 802
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C F SG+C GEKC F H R +C F G C GP C + H
Sbjct: 135 ELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 194
Query: 193 S 193
+
Sbjct: 195 N 195
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 134 GGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPE 187
G ++C K+ +G+C G+ C F H D +R VC + C G
Sbjct: 231 GMMKTELCNKWQETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHR 290
Query: 188 CSYKHSLQNDD 198
C ++HSL + +
Sbjct: 291 CHFRHSLTDQE 301
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 134 GGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPE 187
G ++C K+ +G+CP G+ C F H +R VC + C G
Sbjct: 221 GMTKTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHR 280
Query: 188 CSYKHSL 194
C ++HSL
Sbjct: 281 CHFRHSL 287
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C F SG+C GEKC F H R +C F G C GP C H
Sbjct: 130 ELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRC---H 186
Query: 193 SLQNDDSQR 201
+ N D +R
Sbjct: 187 FIHNADERR 195
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica
GN=MKRN PE=2 SV=1
Length = 368
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 143 KFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKH 192
KF G+C +GE C F HD + + VC F KG C G C Y H
Sbjct: 9 KFFMHGACLKGEYCEFSHDWNDQPN---NVCT-FYQKGSCSYGSRCRYDH 54
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 100 QGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFR 159
Q H + P VSDS K + GG +C K G C +GE C F
Sbjct: 47 QSGHCPNGTRCPERHVSDS---------KTSQPTGGLNSLVC-KHWLRGLCKKGEHCEFL 96
Query: 160 HDTDAREQCLRGVCLDFIIKGKCEKGPECSYKH 192
H+ + R+ C F+ G C G EC Y H
Sbjct: 97 HEYNLRKM---PECNFFMRNGYCSNGDECLYLH 126
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 107 AAKRPSDSV----SDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDT 162
A + P+D++ + S +R+ ++ G D+ K SG CP G +C RH +
Sbjct: 4 AVESPADAILNHSATSYNFRFSPFLRQTYQVGLSPDRPVCKAFQSGHCPNGTRCPERHVS 63
Query: 163 DAREQCLRG-----VCLDFIIKGKCEKGPECSYKH 192
D++ G VC + ++G C+KG C + H
Sbjct: 64 DSKTSQPTGGLNSLVCKHW-LRGLCKKGEHCEFLH 97
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
GN=ZC3H4 PE=1 SV=3
Length = 1303
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKH 192
K+ K+ G C G+ CNF HD + ++ R +C F I G C + C Y H
Sbjct: 393 KVICKYFVEGRCTWGDHCNFSHDIELPKK--RELC-KFYITGFCARAENCPYMH 443
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 122 RYDVSQKRQKHGGGD------GDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLD 175
R+ + + HGGG+ G +C K G C +GE C F H+ + R+ C
Sbjct: 74 RHVTASSQNTHGGGNTFSGGFGSLVC-KHWLRGLCKKGESCEFLHEYNLRKM---PECNF 129
Query: 176 FIIKGKCEKGPECSYKH 192
F+ G C G EC Y H
Sbjct: 130 FVRNGYCSNGDECLYLH 146
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C + SG C G KC F H Q R +C F ++G+C G C + H
Sbjct: 100 ELCRTYSESGRCRYGAKCQFAHGPGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIH 159
Query: 193 SLQND 197
+ D
Sbjct: 160 NPTED 164
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus
GN=Zc3h4 PE=1 SV=2
Length = 1304
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKH 192
K+ K+ G C G+ CNF HD + ++ R +C F I G C + C Y H
Sbjct: 392 KVICKYFVEGRCTWGDHCNFSHDIELPKK--RELC-KFYITGFCARAENCPYMH 442
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRG------VCLDFIIKGKCEKGPECSYKH 192
++C + SG C G KC F H Q R +C F ++G+C G C + H
Sbjct: 99 ELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIH 158
Query: 193 SLQND 197
+ D
Sbjct: 159 NPTED 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,545,343
Number of Sequences: 539616
Number of extensions: 6816024
Number of successful extensions: 16373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 15847
Number of HSP's gapped (non-prelim): 471
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)