Query 014199
Match_columns 429
No_of_seqs 245 out of 1047
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2476 Uncharacterized conser 100.0 1.8E-96 4E-101 736.0 29.7 355 5-429 169-528 (528)
2 KOG2477 Uncharacterized conser 100.0 2.4E-49 5.2E-54 399.3 15.7 217 212-429 405-625 (628)
3 PF04677 CwfJ_C_1: Protein sim 100.0 1.4E-36 3.1E-41 263.3 13.9 116 209-324 6-121 (121)
4 PF04676 CwfJ_C_2: Protein sim 100.0 1.5E-29 3.2E-34 211.9 9.5 96 333-428 1-98 (98)
5 PRK10687 purine nucleoside pho 99.8 2E-18 4.4E-23 149.5 9.9 100 214-313 3-109 (119)
6 COG0537 Hit Diadenosine tetrap 99.7 1.4E-17 3.1E-22 147.9 10.2 99 215-313 2-106 (138)
7 cd01275 FHIT FHIT (fragile his 99.7 3.8E-16 8.2E-21 136.2 11.0 98 216-313 1-105 (126)
8 cd01277 HINT_subgroup HINT (hi 99.7 5.1E-16 1.1E-20 130.0 11.0 97 215-311 1-103 (103)
9 cd07380 MPP_CWF19_N Schizosacc 99.6 1.2E-16 2.6E-21 143.8 5.4 51 8-58 95-150 (150)
10 cd01276 PKCI_related Protein K 99.6 2.9E-15 6.3E-20 125.9 10.2 96 215-310 1-103 (104)
11 PF01230 HIT: HIT domain; Int 99.6 1.4E-14 3.1E-19 120.7 9.6 86 227-312 5-96 (98)
12 cd01278 aprataxin_related apra 99.5 1.2E-13 2.6E-18 116.3 10.6 95 215-309 1-103 (104)
13 KOG3275 Zinc-binding protein o 99.5 1.3E-13 2.7E-18 116.3 9.0 98 213-310 15-118 (127)
14 cd00468 HIT_like HIT family: H 99.5 3E-13 6.4E-18 109.3 8.6 80 231-310 1-86 (86)
15 TIGR00209 galT_1 galactose-1-p 99.2 2E-11 4.4E-16 124.0 9.5 98 214-311 194-302 (347)
16 PRK11720 galactose-1-phosphate 99.2 3.2E-11 6.9E-16 122.5 9.2 99 213-311 193-302 (346)
17 KOG3379 Diadenosine polyphosph 99.1 4.9E-10 1.1E-14 97.2 10.3 87 225-311 14-106 (150)
18 cd00608 GalT Galactose-1-phosp 99.1 2.8E-10 6.1E-15 115.0 8.3 100 213-312 183-295 (329)
19 PLN02643 ADP-glucose phosphory 99.1 5.5E-10 1.2E-14 113.2 9.8 95 214-311 198-302 (336)
20 PF11969 DcpS_C: Scavenger mRN 99.0 5.5E-10 1.2E-14 96.4 5.5 99 215-314 1-107 (116)
21 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.9 2.5E-09 5.5E-14 104.8 5.3 52 9-60 202-257 (262)
22 KOG4359 Protein kinase C inhib 98.2 4.1E-06 8.9E-11 73.2 6.2 103 213-316 30-141 (166)
23 COG1085 GalT Galactose-1-phosp 97.0 0.0018 4E-08 65.4 7.1 98 213-310 184-291 (338)
24 PF02744 GalP_UDP_tr_C: Galact 96.5 0.0031 6.7E-08 57.9 4.7 73 214-286 13-87 (166)
25 KOG1595 CCCH-type Zn-finger pr 93.6 0.12 2.7E-06 54.8 5.8 103 56-196 187-293 (528)
26 KOG2958 Galactose-1-phosphate 93.5 0.14 3E-06 50.7 5.6 70 213-285 198-272 (354)
27 COG4360 APA2 ATP adenylyltrans 93.4 0.12 2.5E-06 49.8 4.9 73 233-313 89-165 (298)
28 cd00608 GalT Galactose-1-phosp 92.1 0.85 1.8E-05 46.3 9.4 62 251-312 96-163 (329)
29 PLN03103 GDP-L-galactose-hexos 92.0 0.28 6.1E-06 51.0 5.8 71 234-312 168-243 (403)
30 PF00642 zf-CCCH: Zinc finger 90.2 0.086 1.9E-06 33.5 -0.0 24 139-162 4-27 (27)
31 PLN02643 ADP-glucose phosphory 86.6 6.7 0.00015 40.1 11.0 75 251-325 110-196 (336)
32 smart00356 ZnF_C3H1 zinc finge 86.4 0.48 1E-05 29.4 1.6 21 140-161 6-26 (27)
33 COG1085 GalT Galactose-1-phosp 85.9 4.9 0.00011 41.0 9.4 65 249-313 93-165 (338)
34 KOG2863 RNA lariat debranching 84.0 0.43 9.3E-06 48.7 0.9 52 6-59 201-253 (456)
35 KOG0562 Predicted hydrolase (H 82.4 1.3 2.7E-05 40.6 3.1 75 235-310 23-104 (184)
36 KOG2720 Predicted hydrolase (H 81.8 1.1 2.3E-05 45.6 2.6 71 238-314 169-242 (431)
37 TIGR00209 galT_1 galactose-1-p 80.5 13 0.00028 38.2 10.1 94 214-312 50-173 (347)
38 PRK11720 galactose-1-phosphate 80.3 13 0.00027 38.3 9.9 60 251-312 108-173 (346)
39 KOG1492 C3H1-type Zn-finger pr 65.9 5 0.00011 38.4 2.7 51 140-196 208-258 (377)
40 KOG1677 CCCH-type Zn-finger pr 65.7 5.2 0.00011 40.3 3.0 60 139-198 133-205 (332)
41 PRK05471 CDP-diacylglycerol py 64.2 24 0.00052 34.6 7.1 91 244-338 69-169 (252)
42 TIGR00672 cdh CDP-diacylglycer 61.2 27 0.00059 34.2 6.8 89 246-338 70-168 (250)
43 PF00642 zf-CCCH: Zinc finger 60.5 4.7 0.0001 25.4 1.0 23 171-193 4-26 (27)
44 PF12239 DUF3605: Protein of u 60.0 56 0.0012 29.8 8.3 66 240-306 77-155 (158)
45 PHA03008 hypothetical protein; 51.5 16 0.00034 34.6 3.3 29 3-31 172-200 (234)
46 PF01087 GalP_UDP_transf: Gala 50.6 53 0.0011 30.4 6.7 98 214-312 52-180 (183)
47 PF02611 CDH: CDP-diacylglycer 50.4 24 0.00053 34.0 4.5 91 245-339 41-141 (222)
48 KOG3969 Uncharacterized conser 41.7 47 0.001 33.1 5.0 89 224-314 156-259 (310)
49 PF01076 Mob_Pre: Plasmid reco 38.7 1.1E+02 0.0025 28.5 7.1 45 271-315 98-145 (196)
50 KOG4138 Unchracterized conserv 28.9 18 0.00039 29.6 -0.1 21 397-424 56-76 (96)
51 KOG2494 C3H1-type Zn-finger pr 27.5 24 0.00053 35.7 0.6 55 140-197 39-96 (331)
52 COG5152 Uncharacterized conser 27.0 26 0.00056 33.2 0.6 24 140-163 143-166 (259)
53 PRK09925 leu operon leader pep 26.5 30 0.00065 21.9 0.6 11 47-57 2-12 (28)
54 KOG1677 CCCH-type Zn-finger pr 25.9 35 0.00075 34.3 1.4 27 139-165 178-204 (332)
55 COG5573 Predicted nucleic-acid 23.9 39 0.00085 29.9 1.1 17 13-29 83-99 (142)
56 PF05011 DBR1: Lariat debranch 22.9 62 0.0014 29.0 2.2 30 46-77 6-35 (145)
57 COG2134 Cdh CDP-diacylglycerol 22.9 6.9E+02 0.015 24.1 9.7 82 250-338 75-169 (252)
58 PHA03073 late transcription fa 22.6 1.5E+02 0.0033 26.6 4.5 49 254-303 94-143 (150)
59 COG1943 Transposase and inacti 22.2 4.4E+02 0.0095 23.2 7.5 69 248-325 13-81 (136)
60 KOG1040 Polyadenylation factor 21.2 56 0.0012 33.3 1.8 51 140-194 79-129 (325)
61 PRK14744 leu operon leader pep 20.6 37 0.00079 21.6 0.2 10 47-56 2-11 (28)
62 KOG1595 CCCH-type Zn-finger pr 20.3 68 0.0015 34.7 2.2 48 149-197 208-262 (528)
No 1
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-96 Score=736.01 Aligned_cols=355 Identities=45% Similarity=0.773 Sum_probs=309.4
Q ss_pred cCCCCCCchHHHHHHHhcCCCeEeecCCCceeecCCCCCC-----CCCccceeeccccCCCcccceeeEecCCCcccCCc
Q 014199 5 ISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV-----DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMS 79 (429)
Q Consensus 5 ~~~~~~gs~~i~~l~~~lkPRYHFa~~~~~fyER~Py~~~-----~~~~vTRFi~La~~gn~~K~Kw~yAf~i~p~~~~~ 79 (429)
..+...||.+|++||+.||||||||+++|+||||+||+|+ .++|+||||+||+|||++|+||+|||||.|+..|.
T Consensus 169 ~~~~~~gs~lvs~La~~lkPRYHFa~~~~v~YErePyrn~~~~~~~~~h~TRFI~LA~vGN~ek~K~lYAfs~~P~~~~~ 248 (528)
T KOG2476|consen 169 ESKRLCGSELVSELAAELKPRYHFAGSDGVFYEREPYRNHAALNEEAGHVTRFIALAKVGNPEKQKWLYAFSLKPMGTME 248 (528)
T ss_pred cccCCcchHHHHHHHHhcCcceEeccCCCceeecccccchhhhcccccceeeeeehhhcCCccccceeeeecccccccch
Confidence 3677889999999999999999999999999999999997 37899999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCccccccccccccCCCCCCCCcceeeeccCCCCCCCccccc
Q 014199 80 AADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFR 159 (429)
Q Consensus 80 ~~~l~~~p~~~T~~Py~~~~~~~~~~~~~kr~~~~~~~~~~~r~~~~~~~~r~~~~~~~~~c~~~~~~g~~~~g~~~~~~ 159 (429)
+.+|.+.|+|+|+|||.... .. ..+.||..++ ++.+++||+++++.+
T Consensus 249 ~~el~a~Ppn~~~~Py~~~d--~~-~qs~kr~~~s--~~~q~ffd~~~~~~~---------------------------- 295 (528)
T KOG2476|consen 249 LAELTAKPPNLIPNPYNLED--VA-IQSNKRPNSS--ESTQYFFDMDKQQLS---------------------------- 295 (528)
T ss_pred hhhcccCCCccCCCCcchhh--hh-hhhccCCCCC--ccceeeeccCccccc----------------------------
Confidence 99999999999999996222 11 1345666543 234445998632221
Q ss_pred cCchhhhhhhcccchhhhhccCcCCCCccccCCCCCCCccccccCCcccccCCCCCCcccCCCCCCCcceEEEECCeEEE
Q 014199 160 HDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYC 239 (429)
Q Consensus 160 ~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~~~~~~~~~~~~~~~~~~~C~FC~~~~~~~~hlIvs~g~~~yl 239 (429)
+.+||++..+++. +++|. +.+.++.||||++||++++||||+||+++|+
T Consensus 296 ----------------------~~~gr~~h~~~~~-----kgpR~----p~~~pg~CwFCLSnP~vEkHLIVsIG~~~Yl 344 (528)
T KOG2476|consen 296 ----------------------KMNGRESHSDKSE-----KGPRK----PKIPPGSCWFCLSNPNVEKHLIVSIGNHFYL 344 (528)
T ss_pred ----------------------cCCcccccccccc-----cCCCC----CCCCCCceEEEecCCChhhheEEEecceeEE
Confidence 1223333222211 11121 3356889999999999999999999999999
Q ss_pred EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEeecCCCCceeEEEEEecCcchHHHH
Q 014199 240 ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAV 319 (429)
Q Consensus 240 ~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~~v~~E~~~~~~~H~HihvVPvp~~~~~~~ 319 (429)
+||||||+.||+|||||+|++++..|++|+++||.+|+.+|++||++.|..+|+||+.+.++.|+|+|+||||+.....+
T Consensus 345 AlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~vvfE~~~~rs~Hlq~Qvipvpks~s~~i 424 (528)
T KOG2476|consen 345 ALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAVVFERQSYRSVHLQLQVIPVPKSSSRQI 424 (528)
T ss_pred eecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeecccceeeEEEEEeccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999668899999999999999999999
Q ss_pred HHHHHHHHHHcCCcceeccCCCCcchhhhHhhhccCCCCeEEEEeCCCcEEEEEeccCCccCcchHHHHHHHhcCCCccc
Q 014199 320 QDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKA 399 (429)
Q Consensus 320 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~g~~~~~~i~~~~~f~~qFgReVla~lL~lp~r~ 399 (429)
+..|..+|++++++|++.+... .|.+..+.+.+||+||+|+|+.|+|++..+++||+||||||||+|||||+|+
T Consensus 425 k~~F~~~A~eag~ef~t~~~~~------s~~~~~n~~l~yF~vELPdg~~L~hr~~k~e~FplqFGReVlAslLn~pdrv 498 (528)
T KOG2476|consen 425 KSSFETAAEEAGLEFETYDSHS------SIKNQSNNGLPYFVVELPDGSILIHRLMKNETFPLQFGREVLASLLNLPDRV 498 (528)
T ss_pred hHHHHHHHHHcCceEEecCcch------hhhhhhccCCceEEEECCCCCeehhhhhccCccchhhhHHHHHHHcCCcccc
Confidence 9999999999999999876543 2566666788999999999999999999999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHHhcCccCCCCC
Q 014199 400 DWRNCMLGKEEETKMVEDFKKRFEAFDPNQ 429 (429)
Q Consensus 400 ~Wr~c~~~~eeE~~~~~~Fk~~fk~fD~~~ 429 (429)
|||+|.+++|||++.+++||++|++||||+
T Consensus 499 dWr~C~~tkeeE~~~ae~Fkk~F~pyDft~ 528 (528)
T KOG2476|consen 499 DWRTCLQTKEEEVALAEKFKKAFKPYDFTL 528 (528)
T ss_pred cHHHhhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999996
No 2
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-49 Score=399.27 Aligned_cols=217 Identities=24% Similarity=0.487 Sum_probs=198.0
Q ss_pred CCCCCcccCCCCCCCcceEEEECCeEEEEecCC-CCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 014199 212 RSKECWFCLSSPSVESHLIVSVGEYYYCALPKG-PLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 290 (429)
Q Consensus 212 ~~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kg-Pl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~ 290 (429)
..++|.||+.++..++|+|||+|..+||+||.. +|..|||+|||.+|.++...||+++|+||.+|+++|+.||++.+.+
T Consensus 405 ~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d 484 (628)
T KOG2477|consen 405 VLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD 484 (628)
T ss_pred HhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999975 6999999999999999999999999999999999999999999999
Q ss_pred eEEEeecC--CCCceeEEEEEecCcchHHHHHHHHHHHHHHcCCcceeccC-CCCcchhhhHhhhccCCCCeEEEEeCCC
Q 014199 291 AVFFEWLS--KRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKS-SKSSDGRRSLRAQFDRNCSFFYVELPEG 367 (429)
Q Consensus 291 ~v~~E~~~--~~~~H~HihvVPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~Yf~v~~~~g 367 (429)
|||+|++. ++.+|+-|||||||.+.++.++.||++|+.+++.||+++.. ...+....+||..||+++|||+|||+..
T Consensus 485 viFyE~a~~l~rrpH~~IeCIPvpqeig~map~YFKkAI~esE~Ews~~~nkkliets~k~lR~~IpKglpYfhV~Fgld 564 (628)
T KOG2477|consen 485 VIFYENAPSLQRRPHTAIECIPVPQEIGSMAPAYFKKAISESEEEWSHRKNKKLIETSKKALRKMIPKGLPYFHVWFGLD 564 (628)
T ss_pred eEEEeccCccccCCceeEEEeechHHhhhhhhHHHHHHHhhhHHHHHhhhHHHHHHhhHHHHHHhcccCCCeEEEEEecc
Confidence 99999433 23689999999999999999999999999999999975543 2223345789999999999999999999
Q ss_pred cEEEEEeccCCccCcchHHHHHHHhcCCCcccccccccCChHHHHHHHHHHHhcCccCCCCC
Q 014199 368 TVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ 429 (429)
Q Consensus 368 ~~~~~~i~~~~~f~~qFgReVla~lL~lp~r~~Wr~c~~~~eeE~~~~~~Fk~~fk~fD~~~ 429 (429)
+||+|||+++..||.||||+|||+||+||+.+ ||.-+...+.....|+.|++.|++|||||
T Consensus 565 ~GfaHVIEded~fpsnfa~eViagMLeLpp~~-wRrr~~~~~kqk~rv~~Fa~~wekfDwTK 625 (628)
T KOG2477|consen 565 GGFAHVIEDEDGFPSNFAREVIAGMLELPPEV-WRRRGSWTGKQKPRVDMFASRWEKFDWTK 625 (628)
T ss_pred CceeeeecccccCcchHHHHHHHHHhhCCHHH-HhhcchhhcCcchHHHHHHHhcccccccc
Confidence 99999999999999999999999999999874 88766666777889999999999999997
No 3
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=100.00 E-value=1.4e-36 Score=263.28 Aligned_cols=116 Identities=43% Similarity=0.850 Sum_probs=110.5
Q ss_pred ccCCCCCCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 014199 209 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG 288 (429)
Q Consensus 209 ~~~~~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g 288 (429)
..+.+++||||++|+++++|+|||+|+++||+||+|||.+||+||||++|++|+.++|+++|+||++|+++|++||++.|
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCCceeEEEEEecCcchHHHHHHHHH
Q 014199 289 KEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFN 324 (429)
Q Consensus 289 ~~~v~~E~~~~~~~H~HihvVPvp~~~~~~~~~~F~ 324 (429)
.++||||.+..+..|+||||||||.+++++++.|||
T Consensus 86 ~~vvf~E~~~~~~~H~~iq~vPvp~~~~~~~~~yFk 121 (121)
T PF04677_consen 86 KDVVFFERVRKRNPHTHIQCVPVPKELGEKAPSYFK 121 (121)
T ss_pred CCEEEEEEeCCCCcEEEEEEEEcCHHHHHhhhhhcC
Confidence 999999954666899999999999999999999996
No 4
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=99.96 E-value=1.5e-29 Score=211.93 Aligned_cols=96 Identities=46% Similarity=0.831 Sum_probs=87.4
Q ss_pred cceec--cCCCCcchhhhHhhhccCCCCeEEEEeCCCcEEEEEeccCCccCcchHHHHHHHhcCCCcccccccccCChHH
Q 014199 333 KFLAT--KSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEE 410 (429)
Q Consensus 333 ~~~~~--~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~g~~~~~~i~~~~~f~~qFgReVla~lL~lp~r~~Wr~c~~~~ee 410 (429)
||++| +......++.++++++++++|||+|+|+.+++|+|+|+++++||+||||+|||+||++|+|++||+|.+++++
T Consensus 1 ews~n~~kk~~~~~~~~~~~~~~~~~~~Yf~V~~~~~~~~~~vie~~~~f~~qFgReVla~lL~lp~r~~Wr~c~~~~~e 80 (98)
T PF04676_consen 1 EWSQNEKKKLIDTSKKKGLRRSIPKGFPYFHVEFPDGKGYAHVIEDEERFPLQFGREVLAGLLNLPERADWRKCQQSKEE 80 (98)
T ss_pred CccccccCCcccccChHHHHHhcCCCCCEEEEEEeCCCEEEEECCcCCccCcchHHHHHHHHhCCCchHHHHhcccCHHH
Confidence 57777 4433333357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCC
Q 014199 411 ETKMVEDFKKRFEAFDPN 428 (429)
Q Consensus 411 E~~~~~~Fk~~fk~fD~~ 428 (429)
|+++|++||++|++||||
T Consensus 81 e~~~~~~Fk~~f~~fD~T 98 (98)
T PF04676_consen 81 ETQDAEAFKKAFKPFDWT 98 (98)
T ss_pred HHHHHHHHHHHccCcCCC
Confidence 999999999999999998
No 5
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.76 E-value=2e-18 Score=149.53 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=81.7
Q ss_pred CCCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----cC
Q 014199 214 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----QG 288 (429)
Q Consensus 214 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~-----~g 288 (429)
++|+||.+..+.....+|++++.++++++..|+++||+||||++|++++.+|+++++.++..+.+.+.++.+. .|
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g 82 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDG 82 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4799999876554455789999999999999999999999999999999999999999999888777766542 35
Q ss_pred CceEEEe--ecCCCCceeEEEEEecCc
Q 014199 289 KEAVFFE--WLSKRGTHANLQAVPIPT 313 (429)
Q Consensus 289 ~~~v~~E--~~~~~~~H~HihvVPvp~ 313 (429)
++++++. .+++.+.|+|+|+||...
T Consensus 83 ~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 83 YRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred eEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 6666654 234447899999999743
No 6
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=147.85 Aligned_cols=99 Identities=22% Similarity=0.202 Sum_probs=81.8
Q ss_pred CCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCc
Q 014199 215 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE 290 (429)
Q Consensus 215 ~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~----~~g~~ 290 (429)
.|.||.+-.......+|+++++++++|+..|.++||+||||++|+.++.++|++++.+|+...+.+.+.++ +.|++
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n 81 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN 81 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 69999876555556688999999999999999999999999999999999999999999977666655544 56777
Q ss_pred eEEEe--ecCCCCceeEEEEEecCc
Q 014199 291 AVFFE--WLSKRGTHANLQAVPIPT 313 (429)
Q Consensus 291 ~v~~E--~~~~~~~H~HihvVPvp~ 313 (429)
++.+. .+++.+.|+|+||||+-.
T Consensus 82 i~~N~g~~agq~V~HlH~HvIPr~~ 106 (138)
T COG0537 82 IGINNGKAAGQEVFHLHIHIIPRYK 106 (138)
T ss_pred EEEecCcccCcCcceEEEEEcCCcC
Confidence 77665 334447899999999744
No 7
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.67 E-value=3.8e-16 Score=136.24 Aligned_cols=98 Identities=23% Similarity=0.272 Sum_probs=79.2
Q ss_pred CcccCCCCCC-CcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCc
Q 014199 216 CWFCLSSPSV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE 290 (429)
Q Consensus 216 C~FC~~~~~~-~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~~ 290 (429)
|+||.+.... +...||++++.++++++..|..+||+||||++|+.++.+|+++++.+|..+.+.+.+.++. .+++
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 9999986543 2267899999999999999999999999999999999999999999999988766666554 4555
Q ss_pred eEEEe--ecCCCCceeEEEEEecCc
Q 014199 291 AVFFE--WLSKRGTHANLQAVPIPT 313 (429)
Q Consensus 291 ~v~~E--~~~~~~~H~HihvVPvp~ 313 (429)
+++.. ..++...|+|+||||+..
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~ 105 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWN 105 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcC
Confidence 55544 123346899999999744
No 8
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.66 E-value=5.1e-16 Score=130.01 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=78.3
Q ss_pred CCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCc
Q 014199 215 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE 290 (429)
Q Consensus 215 ~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~----~~g~~ 290 (429)
+|.||.+..+.....||++++++++++|.+|..+||+||||++|+.++.+|+++++.++....+.+.+.+. ..+++
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 59999986543334489999999999999999999999999999999999999999999987776665554 34667
Q ss_pred eEEEe-e-cCCCCceeEEEEEec
Q 014199 291 AVFFE-W-LSKRGTHANLQAVPI 311 (429)
Q Consensus 291 ~v~~E-~-~~~~~~H~HihvVPv 311 (429)
+++++ . ..+...|+|+|+||+
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 66665 1 223368999999995
No 9
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=99.65 E-value=1.2e-16 Score=143.78 Aligned_cols=51 Identities=57% Similarity=0.963 Sum_probs=47.3
Q ss_pred CCCCchHHHHHHHhcCCCeEeecCCCceeecCCCCCCC-----CCccceeeccccC
Q 014199 8 SSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD-----AVHVTRFLGLAPV 58 (429)
Q Consensus 8 ~~~gs~~i~~l~~~lkPRYHFa~~~~~fyER~Py~~~~-----~~~vTRFi~La~~ 58 (429)
...||+.|++|++.||||||||++.+.||||+||+|+. ..++|||||||++
T Consensus 95 ~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~Pf~~~~~~~~~~~~~TRFi~La~~ 150 (150)
T cd07380 95 LICGSDLIAELAKKLKPRYHFAGLEGVFYEREPYRNDSVLEEKAEHVTRFIGLAPV 150 (150)
T ss_pred cCCCCHHHHHHHHHcCCCeEeecCCCceEeecCccCCCccccccCcceeEEeccCC
Confidence 45799999999999999999999989999999999986 4889999999986
No 10
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.61 E-value=2.9e-15 Score=125.93 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----cCC
Q 014199 215 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----QGK 289 (429)
Q Consensus 215 ~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~-----~g~ 289 (429)
+|+||.+..+.....||++++.+++++|.+|..+||+||||++|++++.+|+++++.++..+.+.++++.+. .|+
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 599999865433456889999999999999999999999999999999999887777777665555444333 355
Q ss_pred ceEEEe-e-cCCCCceeEEEEEe
Q 014199 290 EAVFFE-W-LSKRGTHANLQAVP 310 (429)
Q Consensus 290 ~~v~~E-~-~~~~~~H~HihvVP 310 (429)
++++.. . +.+...|+|+|||+
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeC
Confidence 555544 2 22335799999997
No 11
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.56 E-value=1.4e-14 Score=120.73 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=70.0
Q ss_pred cceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEe--ecCCC
Q 014199 227 SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLSKR 300 (429)
Q Consensus 227 ~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~~~v~~E--~~~~~ 300 (429)
+..||++++.++++++..|..+||+||||++|+.++.+|+++++.+|+...+.+.+.++. .|++++.+. .+++.
T Consensus 5 ~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~ 84 (98)
T PF01230_consen 5 PARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS 84 (98)
T ss_dssp HCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred CeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence 456889999999999999999999999999999999999999999999888877776654 455555554 23444
Q ss_pred CceeEEEEEecC
Q 014199 301 GTHANLQAVPIP 312 (429)
Q Consensus 301 ~~H~HihvVPvp 312 (429)
++|+|+||||+-
T Consensus 85 v~HlH~HviPR~ 96 (98)
T PF01230_consen 85 VPHLHFHVIPRY 96 (98)
T ss_dssp SSS-EEEEEEES
T ss_pred cCEEEEEEeccc
Confidence 789999999974
No 12
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.50 E-value=1.2e-13 Score=116.27 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=73.4
Q ss_pred CCcccCCCCCC--CcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh------
Q 014199 215 ECWFCLSSPSV--ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN------ 286 (429)
Q Consensus 215 ~C~FC~~~~~~--~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~------ 286 (429)
.|+||.+..+. ....||++++.+++++|..|..+||+||||++|+.++.+|+++++.++..+.+.+.+.+..
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 49999976432 2466889999999999999999999999999999999999999999999987776664433
Q ss_pred cCCceEEEeecCCCCceeEEEEE
Q 014199 287 QGKEAVFFEWLSKRGTHANLQAV 309 (429)
Q Consensus 287 ~g~~~v~~E~~~~~~~H~HihvV 309 (429)
.|+++++.....+...|+|+|||
T Consensus 81 ~~~n~g~h~~p~~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPFTSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCCcCeeeEEEEee
Confidence 23333222211123579999997
No 13
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-13 Score=116.30 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=82.7
Q ss_pred CCCCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccc---cCCCCCCCHHHHHHHHHHHHHHHHHHH-hcC
Q 014199 213 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEH---VPNTISTSPECEKELGRFQNSLMMYYK-NQG 288 (429)
Q Consensus 213 ~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H---~~s~~~l~~e~~~Ei~~~~~~L~~~~~-~~g 288 (429)
...|+||.+-.+.-...||++++.|+++.+..|..|||.||||+.| .+...+.++++...++-..+.+++.+. ..|
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~g 94 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLEDG 94 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 5689999987654445688999999999999999999999999999 566678899999999999999988877 467
Q ss_pred CceEEEe-e-cCCCCceeEEEEEe
Q 014199 289 KEAVFFE-W-LSKRGTHANLQAVP 310 (429)
Q Consensus 289 ~~~v~~E-~-~~~~~~H~HihvVP 310 (429)
++++.++ . ..+.+.|+|+||+|
T Consensus 95 Yrvv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 95 YRVVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred eeEEEcCCcccceEEEEEEEEEeC
Confidence 9988887 2 23346799999999
No 14
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.45 E-value=3e-13 Score=109.27 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=65.2
Q ss_pred EEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEe-e-cCCCCcee
Q 014199 231 VSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE-W-LSKRGTHA 304 (429)
Q Consensus 231 vs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~~~v~~E-~-~~~~~~H~ 304 (429)
|++++++++++|..|..+||+||||++|+.++.+++++++.++....+.+.+.+++ .+++++++. . +.+...|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 47899999999999999999999999999999999999999999988877777653 233444333 2 23336799
Q ss_pred EEEEEe
Q 014199 305 NLQAVP 310 (429)
Q Consensus 305 HihvVP 310 (429)
|+|+||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 15
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.25 E-value=2e-11 Score=123.99 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCCcccCCCCC-C-CcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-c---
Q 014199 214 KECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 287 (429)
Q Consensus 214 ~~C~FC~~~~~-~-~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~-~--- 287 (429)
..|+||.+... . ....||++++++++++|..|..+||+||||++|+.++.+|+++++.+|....+.+.+.+.. .
T Consensus 194 g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~ 273 (347)
T TIGR00209 194 KSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS 273 (347)
T ss_pred CCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 68999987543 2 2457899999999999999999999999999999999999999999999888777766643 2
Q ss_pred -CCceEEEe-ecCCC---CceeEEEEEec
Q 014199 288 -GKEAVFFE-WLSKR---GTHANLQAVPI 311 (429)
Q Consensus 288 -g~~~v~~E-~~~~~---~~H~HihvVPv 311 (429)
++++++.. ..++. ..|+|+|++|+
T Consensus 274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPr 302 (347)
T TIGR00209 274 FPYSMGWHGAPFNGEENQHWQLHAHFYPP 302 (347)
T ss_pred CCcceeEEecccCCCCCcEEEEEEEEeCC
Confidence 45666655 22222 25899999997
No 16
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.22 E-value=3.2e-11 Score=122.47 Aligned_cols=99 Identities=13% Similarity=0.052 Sum_probs=78.7
Q ss_pred CCCCcccCCCCC-CC-cceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----
Q 014199 213 SKECWFCLSSPS-VE-SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN---- 286 (429)
Q Consensus 213 ~~~C~FC~~~~~-~~-~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~---- 286 (429)
.+.|.||.+... .+ ...||++++++++++|..|..+||+||||++|+.++.+|+++++.+|....+.+.+.+..
T Consensus 193 ~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~ 272 (346)
T PRK11720 193 HGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQC 272 (346)
T ss_pred cCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 368999997643 22 246899999999999999999999999999999999999999999999887777666543
Q ss_pred -cCCceEEEe-ecCC---CCceeEEEEEec
Q 014199 287 -QGKEAVFFE-WLSK---RGTHANLQAVPI 311 (429)
Q Consensus 287 -~g~~~v~~E-~~~~---~~~H~HihvVPv 311 (429)
.++++++.. -.+. ...|+|+|++|+
T Consensus 273 ~~pyn~~~h~~p~~~~~~~~~H~HihiiPr 302 (346)
T PRK11720 273 SFPYSMGWHGAPFNGEENDHWQLHAHFYPP 302 (346)
T ss_pred CCCCceeEEecccCCCCCeeEEEEEEEeCC
Confidence 235666555 1222 247999999996
No 17
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.11 E-value=4.9e-10 Score=97.21 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=71.3
Q ss_pred CCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCc--eEEEe---ecC
Q 014199 225 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-GKE--AVFFE---WLS 298 (429)
Q Consensus 225 ~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~-g~~--~v~~E---~~~ 298 (429)
+...-|++...++|++.+..|+.|||+||+|++-++.+.+|+.++..+|..-.+.+.++++.. +.. .|.+. .++
T Consensus 14 i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG 93 (150)
T KOG3379|consen 14 IPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG 93 (150)
T ss_pred CCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence 344458899999999999999999999999999999999999999999999888888888763 222 22222 355
Q ss_pred CCCceeEEEEEec
Q 014199 299 KRGTHANLQAVPI 311 (429)
Q Consensus 299 ~~~~H~HihvVPv 311 (429)
+.++|+|+|++|+
T Consensus 94 QTVpHvHvHIlPR 106 (150)
T KOG3379|consen 94 QTVPHVHVHILPR 106 (150)
T ss_pred cccceeEEEEccc
Confidence 5579999999996
No 18
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.07 E-value=2.8e-10 Score=115.04 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=77.6
Q ss_pred CCCCcccCCCCC-C-CcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----
Q 014199 213 SKECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN---- 286 (429)
Q Consensus 213 ~~~C~FC~~~~~-~-~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~---- 286 (429)
...|.||.+... . ....||++++++.+++|-.|..|||+||||++|+.++.+|+++++.+|..+.+.+.+.+.+
T Consensus 183 ~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~ 262 (329)
T cd00608 183 HGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNC 262 (329)
T ss_pred cCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 368999987533 2 2356899999999999999999999999999999999999999999999888777755543
Q ss_pred -cCCceEEEe-ecCC-----CCceeEEEEEecC
Q 014199 287 -QGKEAVFFE-WLSK-----RGTHANLQAVPIP 312 (429)
Q Consensus 287 -~g~~~v~~E-~~~~-----~~~H~HihvVPvp 312 (429)
.++++++.. ..++ ...|+|+|++|+-
T Consensus 263 ~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~ 295 (329)
T cd00608 263 SFPYSMGWHQAPTGGKELENWYYHWHFEIPPRR 295 (329)
T ss_pred CCCeEEEEeccCCCCCcCCcceEEEEEEeCCCc
Confidence 245555544 1221 2469999999873
No 19
>PLN02643 ADP-glucose phosphorylase
Probab=99.06 E-value=5.5e-10 Score=113.17 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCC
Q 014199 214 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGK 289 (429)
Q Consensus 214 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~----~g~ 289 (429)
..|.||.+..... ||++++++.+++|..|..+||+||||++|+.++.+|+++++.+|....+.+.+.+.. .++
T Consensus 198 g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~py 274 (336)
T PLN02643 198 GKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPY 274 (336)
T ss_pred CCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 6899999764322 899999999999999999999999999999999999999999999888766655542 356
Q ss_pred ceEEEe-ecC---CCC--ceeEEEEEec
Q 014199 290 EAVFFE-WLS---KRG--THANLQAVPI 311 (429)
Q Consensus 290 ~~v~~E-~~~---~~~--~H~HihvVPv 311 (429)
++++.. -.. +.. .|+|+|++|+
T Consensus 275 N~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 275 NYMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred eeeeecCCCccccCcccceEEEEEEecC
Confidence 766665 221 112 4777799996
No 20
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.99 E-value=5.5e-10 Score=96.42 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=69.0
Q ss_pred CCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC----
Q 014199 215 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKNQGK---- 289 (429)
Q Consensus 215 ~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~-H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~---- 289 (429)
+|+||.+....+..-|++.++.+.++-|..|..+-|+||||++ |+.|+.+|+.+-..-|..+.....++++..+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999998766556668899999999999999999999999999 99999999887766666666666666654321
Q ss_pred --c-eEEEeecCCCCceeEEEEEecCcc
Q 014199 290 --E-AVFFEWLSKRGTHANLQAVPIPTS 314 (429)
Q Consensus 290 --~-~v~~E~~~~~~~H~HihvVPvp~~ 314 (429)
. .+.|- ......|+|+|||..+..
T Consensus 81 ~~~~~~gfH-~~PS~~HLHlHvi~~~~~ 107 (116)
T PF11969_consen 81 SDDIRLGFH-YPPSVYHLHLHVISPDFD 107 (116)
T ss_dssp GGGEEEEEE-SS-SSSS-EEEEEETTS-
T ss_pred hhhhccccc-CCCCcceEEEEEccCCCc
Confidence 1 22333 333467999999997654
No 21
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.85 E-value=2.5e-09 Score=104.79 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCCchHHHHHHHhcCCCeEeecCCCceee-cCCCCCC---CCCccceeeccccCCC
Q 014199 9 SNTDSTVSELVAEIKPRYHIAGSKGVFYA-REPYSNV---DAVHVTRFLGLAPVGN 60 (429)
Q Consensus 9 ~~gs~~i~~l~~~lkPRYHFa~~~~~fyE-R~Py~~~---~~~~vTRFi~La~~gn 60 (429)
..||+.+++|+..|||||||||....+|| +.||.|. +..++||||||++.-.
T Consensus 202 ~~Gs~~~~~ll~~lkPryhf~gH~H~~f~~~~~~~~~~~~~~~~~TRFiaL~k~~~ 257 (262)
T cd00844 202 TLGSPAAEELLKHLKPRYWFSAHLHVKFAALVPHENKSPGNTNKETKFLALDKCLP 257 (262)
T ss_pred CCCCHHHHHHHHHhCCCEEEEecCCcccceecCCcccccCCCCcceEEEEcccccC
Confidence 56999999999999999999998778787 6699984 3578999999999754
No 22
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=98.16 E-value=4.1e-06 Score=73.24 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=61.8
Q ss_pred CCCCcccCCCCC-C-CcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 014199 213 SKECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 290 (429)
Q Consensus 213 ~~~C~FC~~~~~-~-~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~ 290 (429)
.+.|.||.+... . .+-+..-+.+++.++=++.|-..-|-|+||++|+.+..+|..+...=+.+..+.=+..|.....
T Consensus 30 ~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~- 108 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF- 108 (166)
T ss_pred CCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc-
Confidence 447999998642 2 3344333445555556799999999999999999999999765433333333322222332111
Q ss_pred eEEEe-ecCCC------CceeEEEEEecCcchH
Q 014199 291 AVFFE-WLSKR------GTHANLQAVPIPTSKA 316 (429)
Q Consensus 291 ~v~~E-~~~~~------~~H~HihvVPvp~~~~ 316 (429)
+.+-+ +++.. +.|+|+|+|--|.+++
T Consensus 109 td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMg 141 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMG 141 (166)
T ss_pred CCchheeEeccCCCcceeeeeeEeeecchHHhc
Confidence 12212 22222 4699999996555544
No 23
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.97 E-value=0.0018 Score=65.37 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=73.9
Q ss_pred CCCCcccCCCCC--CCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc---
Q 014199 213 SKECWFCLSSPS--VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ--- 287 (429)
Q Consensus 213 ~~~C~FC~~~~~--~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~--- 287 (429)
...|.||.+... .....||..+++..++.|-...-|-+++|+|++|+..+.++++++..+|....+.|...|...
T Consensus 184 ~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~ 263 (338)
T COG1085 184 NGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGN 263 (338)
T ss_pred cCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCC
Confidence 468999987532 234578878888877888788889999999999999999999999999998888777776642
Q ss_pred --CCceEEEe-ecC--CCCceeEEEEEe
Q 014199 288 --GKEAVFFE-WLS--KRGTHANLQAVP 310 (429)
Q Consensus 288 --g~~~v~~E-~~~--~~~~H~HihvVP 310 (429)
.+.+.|.- ..+ ..-.|+|+|++|
T Consensus 264 ~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 264 SFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred CCceeeeeecCCCCcccccceEEEEEcc
Confidence 23444444 112 113599999999
No 24
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=96.54 E-value=0.0031 Score=57.88 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=46.4
Q ss_pred CCCcccCCCC--CCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 014199 214 KECWFCLSSP--SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN 286 (429)
Q Consensus 214 ~~C~FC~~~~--~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~ 286 (429)
+.|.||-... ......||+.+++..++.|-..--|--++|+|.+|+.++.++++++..++....+.+...+..
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~ 87 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDN 87 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcc
Confidence 4799997642 223456888999877777877777889999999999999999999888887766666655543
No 25
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.56 E-value=0.12 Score=54.77 Aligned_cols=103 Identities=22% Similarity=0.431 Sum_probs=65.9
Q ss_pred ccCCCcccceeeEecCCCcccCCchhhhcCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCccccccccccccCCCC
Q 014199 56 APVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGG 135 (429)
Q Consensus 56 a~~gn~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~T~~Py~~~~~~~~~~~~~kr~~~~~~~~~~~r~~~~~~~~r~~~~ 135 (429)
|.|+.++ --||+|.|.|=+.. .--+=|+|||.... +..++|. ...|. |
T Consensus 187 ~~ys~De--FrMy~fKir~C~R~-------~shDwteCPf~Hpg-----EkARRRD-----PRkyh-Y------------ 234 (528)
T KOG1595|consen 187 GIYSSDE--FRMYSFKIRRCSRP-------RSHDWTECPFAHPG-----EKARRRD-----PRKYH-Y------------ 234 (528)
T ss_pred ccccccc--eEEEeeeecccCCc-------cCCCcccCCccCCC-----cccccCC-----ccccc-c------------
Confidence 6666654 36899999887642 23577999997421 0011110 00110 0
Q ss_pred CCCCcceeeeccCCCCCCCccccccC----chhhhhhhcccchhhhhccCcCCCCccccCCCCCC
Q 014199 136 DGDKMCFKFIYSGSCPRGEKCNFRHD----TDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQN 196 (429)
Q Consensus 136 ~~~~~c~~~~~~g~~~~g~~~~~~~~----~~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~ 196 (429)
-..+|=.|.. |+|.+|+.|.|+|- +.+-+-|-.+.|+|- |.|.+ +-|.|.|.++.
T Consensus 235 -s~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eq 293 (528)
T KOG1595|consen 235 -SSTPCPEFRK-GSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQ 293 (528)
T ss_pred -cCccCccccc-CCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChHH
Confidence 1125655555 88999999999998 445577878889765 77777 77999998764
No 26
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=93.48 E-value=0.14 Score=50.67 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCCCcc-----cCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 014199 213 SKECWF-----CLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 285 (429)
Q Consensus 213 ~~~C~F-----C~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~ 285 (429)
..+|.+ |. ..+++.||-++++..++.|=-.+-|--+||||++|+.++.++++-+..+|....+.|..-|.
T Consensus 198 hgk~ll~dy~~~E---~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kyd 272 (354)
T KOG2958|consen 198 HGKCLLMDYVKQE---ALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYD 272 (354)
T ss_pred cCCchHHHHHHHH---HhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHH
Confidence 346766 43 34788899888888888886667777899999999999999999888888776666554443
No 27
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.12 Score=49.84 Aligned_cols=73 Identities=21% Similarity=0.192 Sum_probs=43.7
Q ss_pred ECCeEEE-EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEe--ecCCC-CceeEEEE
Q 014199 233 VGEYYYC-ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANLQA 308 (429)
Q Consensus 233 ~g~~~yl-~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~Hihv 308 (429)
-++..|+ .++|.|+.+-|+|||..+--.--..|+..-+.-+.+. ...-+ +.+|++ -+++. ..|-|+|+
T Consensus 89 ~~s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~v------L~~ld--glvFYNsGp~aGaSq~HkHLQi 160 (298)
T COG4360 89 DISDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLADFTTAYAV------LCGLD--GLVFYNSGPIAGASQDHKHLQI 160 (298)
T ss_pred CCchhHhhhhhcCCcccceeEEeehhhhhccccCCHHHHHHHHHH------Hhccc--ceEEecCCCCcCcCCCccceeE
Confidence 3444565 5789999999999998764433333333222111111 11122 378887 23333 47999999
Q ss_pred EecCc
Q 014199 309 VPIPT 313 (429)
Q Consensus 309 VPvp~ 313 (429)
||.|-
T Consensus 161 ~pmPf 165 (298)
T COG4360 161 VPMPF 165 (298)
T ss_pred eeccc
Confidence 99993
No 28
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=92.09 E-value=0.85 Score=46.32 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=39.5
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCc-eEEEee---cCCC-CceeEEEEEecC
Q 014199 251 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGKE-AVFFEW---LSKR-GTHANLQAVPIP 312 (429)
Q Consensus 251 ~LIIP~~H~~s~~~l~~e~~~Ei~~-~~~~L~~~~~~~g~~-~v~~E~---~~~~-~~H~HihvVPvp 312 (429)
++|-.-.|..++.+++.+.+.++.. +++.+..+.+..+.. +.+|++ .++. ..|-|.|++-.|
T Consensus 96 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~ 163 (329)
T cd00608 96 VICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALP 163 (329)
T ss_pred EEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCC
Confidence 5577888999999999887777765 444555544333332 445562 2222 469999987543
No 29
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=92.01 E-value=0.28 Score=50.96 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=40.4
Q ss_pred CCeEEEEecCCCCCCCeEEEEec--cccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCceEEEeec-CC-CCceeEEEE
Q 014199 234 GEYYYCALPKGPLVEDHVLVIPV--EHVPNTISTSPECEKELGRFQNSLMMYYKNQ-GKEAVFFEWL-SK-RGTHANLQA 308 (429)
Q Consensus 234 g~~~yl~l~kgPl~~GH~LIIP~--~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~-g~~~v~~E~~-~~-~~~H~Hihv 308 (429)
++...|+++..||.+||+||||- .|.+-..+ .+.. .+ ++.-+.... ..-.++|+.. +. ...|+|.|.
T Consensus 168 ~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~--~~~l----~l--a~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa 239 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHVLLVPRVLDCLPQRID--PDSF----LL--ALYMAAEANNPYFRVGYNSLGAFATINHLHFQA 239 (403)
T ss_pred CCccEEEEeCCCCccCeEEEcCCcccCCCeEec--HHHH----HH--HHHHHHhcCCCcEEEEecCCccccCcceeeeee
Confidence 44556788999999999999964 57665443 2222 11 122222222 2123555511 22 356999999
Q ss_pred EecC
Q 014199 309 VPIP 312 (429)
Q Consensus 309 VPvp 312 (429)
.-.+
T Consensus 240 ~yl~ 243 (403)
T PLN03103 240 YYLA 243 (403)
T ss_pred cccC
Confidence 8653
No 30
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=90.18 E-value=0.086 Score=33.54 Aligned_cols=24 Identities=46% Similarity=1.122 Sum_probs=18.1
Q ss_pred CcceeeeccCCCCCCCccccccCc
Q 014199 139 KMCFKFIYSGSCPRGEKCNFRHDT 162 (429)
Q Consensus 139 ~~c~~~~~~g~~~~g~~~~~~~~~ 162 (429)
.+|..|..+|.|+.|+.|+|.|++
T Consensus 4 ~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 4 KLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp SB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccChhhccCCccCCCCCcCccCCC
Confidence 368889999999999999999874
No 31
>PLN02643 ADP-glucose phosphorylase
Probab=86.62 E-value=6.7 Score=40.05 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=44.1
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHHH-HHHHHHHHHhcCCc-eEEEeec---CCC-CceeEEEEEecC---cchHH---H
Q 014199 251 VLVIPVEHVPNTISTSPECEKELGRF-QNSLMMYYKNQGKE-AVFFEWL---SKR-GTHANLQAVPIP---TSKAA---A 318 (429)
Q Consensus 251 ~LIIP~~H~~s~~~l~~e~~~Ei~~~-~~~L~~~~~~~g~~-~v~~E~~---~~~-~~H~HihvVPvp---~~~~~---~ 318 (429)
++|-.=+|..++.+++.+.+..+... ++.+..+.+..+.. +.+||+- ++. ..|-|.|++-.| ..... .
T Consensus 110 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~ 189 (336)
T PLN02643 110 VVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDG 189 (336)
T ss_pred EEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHH
Confidence 34556679999999998877777654 44444433333333 4556622 222 469999988544 44433 3
Q ss_pred HHHHHHH
Q 014199 319 VQDIFNL 325 (429)
Q Consensus 319 ~~~~F~~ 325 (429)
+..||.+
T Consensus 190 ~~~y~~~ 196 (336)
T PLN02643 190 SKEYFEK 196 (336)
T ss_pred HHHHHHH
Confidence 4455554
No 32
>smart00356 ZnF_C3H1 zinc finger.
Probab=86.36 E-value=0.48 Score=29.40 Aligned_cols=21 Identities=43% Similarity=1.116 Sum_probs=18.6
Q ss_pred cceeeeccCCCCCCCccccccC
Q 014199 140 MCFKFIYSGSCPRGEKCNFRHD 161 (429)
Q Consensus 140 ~c~~~~~~g~~~~g~~~~~~~~ 161 (429)
+|..| ..|.|+.|..|+|.|+
T Consensus 6 ~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 6 LCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred cCcCc-cCCCCCCCCCcCCCCc
Confidence 68888 8899999999999886
No 33
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=85.88 E-value=4.9 Score=41.03 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=42.9
Q ss_pred CeEEEE--eccccCCCCCCCHHHHHHHHHH-HHHHHHHHHhcCC-ceEEEee---cCCC-CceeEEEEEecCc
Q 014199 249 DHVLVI--PVEHVPNTISTSPECEKELGRF-QNSLMMYYKNQGK-EAVFFEW---LSKR-GTHANLQAVPIPT 313 (429)
Q Consensus 249 GH~LII--P~~H~~s~~~l~~e~~~Ei~~~-~~~L~~~~~~~g~-~~v~~E~---~~~~-~~H~HihvVPvp~ 313 (429)
|++.|| .-.|..++.+++.+...++.++ +..++++.+...+ =+.+|++ .++. ..|-|.|++-.|.
T Consensus 93 g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~ 165 (338)
T COG1085 93 GKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV 165 (338)
T ss_pred cceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc
Confidence 655544 5679999999999988888876 4455566655333 3555662 1222 4699999987653
No 34
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=84.00 E-value=0.43 Score=48.70 Aligned_cols=52 Identities=25% Similarity=0.368 Sum_probs=38.6
Q ss_pred CCCCCCchHHHHHHHhcCCCeEeecC-CCceeecCCCCCCCCCccceeeccccCC
Q 014199 6 SDSSNTDSTVSELVAEIKPRYHIAGS-KGVFYAREPYSNVDAVHVTRFLGLAPVG 59 (429)
Q Consensus 6 ~~~~~gs~~i~~l~~~lkPRYHFa~~-~~~fyER~Py~~~~~~~vTRFi~La~~g 59 (429)
.....||+++.+|...|||+|.||+. .-.|=.-.+- ....++|.|++|-+--
T Consensus 201 e~~~LGSp~~~eLL~~LkP~yWfsAHLH~KFaA~v~H--~~~~~~tkflaldKcl 253 (456)
T KOG2863|consen 201 EEGKLGSPALEELLEDLKPQYWFSAHLHVKFAALVQH--NKRSHVTKFLALDKCL 253 (456)
T ss_pred hcCCcCChHHHHHHHHhCcchhhhhhHhhHHhhhhcc--cCcCCCcccccccccC
Confidence 34567999999999999999999986 2234444332 2368899999987763
No 35
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=82.39 E-value=1.3 Score=40.58 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=40.5
Q ss_pred CeEEEEecCCCCCCCeEEEEec-cccCCCCCC---CHHHHHHHHHHHHHHHHHHHhcCCceEEEe--ecCCC-CceeEEE
Q 014199 235 EYYYCALPKGPLVEDHVLVIPV-EHVPNTIST---SPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANLQ 307 (429)
Q Consensus 235 ~~~yl~l~kgPl~~GH~LIIP~-~H~~s~~~l---~~e~~~Ei~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~Hih 307 (429)
+.+.|+-+++|=..-|.||.|. .=++++..+ .-+...|+...-.++...+...+. ..+|- +-+.. ..|+|+|
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~-~~~f~vG~HavPSM~~LHLH 101 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEAL-CNYFRVGFHAVPSMNNLHLH 101 (184)
T ss_pred ccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhh-hhheeeeeccCcchhheeEE
Confidence 4788888899999999999995 222222222 112333443333344444432211 11122 11222 3599999
Q ss_pred EEe
Q 014199 308 AVP 310 (429)
Q Consensus 308 vVP 310 (429)
||-
T Consensus 102 VIS 104 (184)
T KOG0562|consen 102 VIS 104 (184)
T ss_pred Eee
Confidence 997
No 36
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=81.85 E-value=1.1 Score=45.55 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=38.2
Q ss_pred EEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC--CceEEEeecCCC-CceeEEEEEecCcc
Q 014199 238 YCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG--KEAVFFEWLSKR-GTHANLQAVPIPTS 314 (429)
Q Consensus 238 yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g--~~~v~~E~~~~~-~~H~HihvVPvp~~ 314 (429)
.|++++.|+..||+||||.- .++.+... ....++-++.-|....+ +.+.++--.+.. +.|+|+|..=.|.+
T Consensus 169 vvaIN~sPie~~H~LiiP~V-----~kc~pQri-t~~al~lav~~m~~~dd~~frlgyNSlga~AsVNHLHfha~y~p~d 242 (431)
T KOG2720|consen 169 VVAINVSPIEYGHVLIIPRV-----LKCLPQRI-THKALLLAVTMMAEADDPYFRLGYNSLGAFASVNHLHFHAYYLPMD 242 (431)
T ss_pred eEEEecCccccCcEEEecch-----hccCccee-eHHHHHHHHHHHHhcCCchhheecccchhhhhhhhhhhhhhhcccc
Confidence 46778889999999999963 33222211 11223334444544332 233333211222 46999998754444
No 37
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=80.53 E-value=13 Score=38.24 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCCcccCCCCCCCcceEEEECC--eEEEEecCCCCCC--------------------C-e-EEEEeccccCCCCCCCHHH
Q 014199 214 KECWFCLSSPSVESHLIVSVGE--YYYCALPKGPLVE--------------------D-H-VLVIPVEHVPNTISTSPEC 269 (429)
Q Consensus 214 ~~C~FC~~~~~~~~hlIvs~g~--~~yl~l~kgPl~~--------------------G-H-~LIIP~~H~~s~~~l~~e~ 269 (429)
..|+||-.|...... | ..+ .++|+-+++|... | | ++|--=+|..++.+++.+.
T Consensus 50 ~~CPfcpgne~~~~~-~--~~~w~~~rV~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~~ 126 (347)
T TIGR00209 50 PDCYLCPGNKRVTGD-L--NPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAA 126 (347)
T ss_pred CCCCCCCCCCCCCCC-c--CCCCceEEEEeCCCcccccCCCCCCcCCCcccccCCCCeeEEEEEeCCCccCChhHCCHHH
Confidence 469999988543222 2 222 3445555666321 2 2 3445667999999999887
Q ss_pred HHHHHH-HHHHHHHHHHhcCCc-eEEEeecC---CC-CceeEEEEEecC
Q 014199 270 EKELGR-FQNSLMMYYKNQGKE-AVFFEWLS---KR-GTHANLQAVPIP 312 (429)
Q Consensus 270 ~~Ei~~-~~~~L~~~~~~~g~~-~v~~E~~~---~~-~~H~HihvVPvp 312 (429)
+..+.. ++..+..+. + +.. +.+||+-+ +. ..|-|-|++-.|
T Consensus 127 i~~v~~~~~~r~~~l~-~-~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p 173 (347)
T TIGR00209 127 LTEIVKTWQEQTAELG-K-TYPWVQIFENKGAAMGCSNPHPHGQIWANS 173 (347)
T ss_pred HHHHHHHHHHHHHHHH-h-CCcEEEEEeecCcccCcCCCCCceeeeeCC
Confidence 777664 344444444 2 333 55677322 22 369999988543
No 38
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=80.31 E-value=13 Score=38.27 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=37.4
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCc-eEEEeec---CCC-CceeEEEEEecC
Q 014199 251 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGKE-AVFFEWL---SKR-GTHANLQAVPIP 312 (429)
Q Consensus 251 ~LIIP~~H~~s~~~l~~e~~~Ei~~-~~~~L~~~~~~~g~~-~v~~E~~---~~~-~~H~HihvVPvp 312 (429)
++|-.-+|..++.+++.+.+..+.. ++..+..+.+. .. +.+||+- .+. ..|-|.|++-.|
T Consensus 108 Viv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p 173 (346)
T PRK11720 108 VICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIWANS 173 (346)
T ss_pred EEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeeeeCC
Confidence 4555778999999999887777664 34444444333 33 4456622 222 368888887543
No 39
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=65.93 E-value=5 Score=38.38 Aligned_cols=51 Identities=29% Similarity=0.855 Sum_probs=42.7
Q ss_pred cceeeeccCCCCCCCccccccCchhhhhhhcccchhhhhccCcCCCCccccCCCCCC
Q 014199 140 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQN 196 (429)
Q Consensus 140 ~c~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~ 196 (429)
-|+.+...|-|-+|.-|+|.|.+-.. -||+.|. .|+|....+|.++|+.++
T Consensus 208 ycryynangicgkgaacrfvheptrk-----ticpkfl-ngrcnkaedcnlsheldp 258 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHEPTRK-----TICPKFL-NGRCNKAEDCNLSHELDP 258 (377)
T ss_pred EEEEecCCCcccCCceeeeecccccc-----ccChHHh-cCccCchhcCCcccccCc
Confidence 47888889999999999999998554 6788876 678888888999999875
No 40
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=65.69 E-value=5.2 Score=40.33 Aligned_cols=60 Identities=30% Similarity=0.694 Sum_probs=49.1
Q ss_pred CcceeeeccCCCCC-CCccccccCchhh------------hhhhcccchhhhhccCcCCCCccccCCCCCCCc
Q 014199 139 KMCFKFIYSGSCPR-GEKCNFRHDTDAR------------EQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDD 198 (429)
Q Consensus 139 ~~c~~~~~~g~~~~-g~~~~~~~~~~~~------------~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~~ 198 (429)
..|.-+..+|+|.- |..|+|.|-.... ..+-.-.|..|...|.|--|.+|.|.|......
T Consensus 133 ~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 133 PLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred CcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 48999999999998 9999997764332 234467899999999999999999999876543
No 41
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=64.17 E-value=24 Score=34.58 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=59.7
Q ss_pred CCCCCCeEEEEeccccCCCCCC------CHHHHHHHHHHHHHHHHHHHh-cCCceEEEee--cCCCC-ceeEEEEEecCc
Q 014199 244 GPLVEDHVLVIPVEHVPNTIST------SPECEKELGRFQNSLMMYYKN-QGKEAVFFEW--LSKRG-THANLQAVPIPT 313 (429)
Q Consensus 244 gPl~~GH~LIIP~~H~~s~~~l------~~e~~~Ei~~~~~~L~~~~~~-~g~~~v~~E~--~~~~~-~H~HihvVPvp~ 313 (429)
.+.-+-|.|+||...+.-+.+- ++.-|.+-+..+..+.+.+.. -.-+.+...+ ..+++ .|+|||+--+
T Consensus 69 D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsCl-- 146 (252)
T PRK05471 69 DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRTQDQLHIHISCL-- 146 (252)
T ss_pred cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCccccceeeehhhC--
Confidence 3444669999999999887752 456777777777777766653 1223344441 22333 5888888664
Q ss_pred chHHHHHHHHHHHHHHcCCcceecc
Q 014199 314 SKAAAVQDIFNLAAEKLGFKFLATK 338 (429)
Q Consensus 314 ~~~~~~~~~F~~~~~~~~~~~~~~~ 338 (429)
..++.......+...+..|..++
T Consensus 147 --rp~v~~~L~~~~~~i~~~W~~lp 169 (252)
T PRK05471 147 --RPDVRAQLDNNLAAISSRWLPLP 169 (252)
T ss_pred --CHHHHHHHHHhcccCCCCceeCC
Confidence 34566677777777788898665
No 42
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=61.15 E-value=27 Score=34.21 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=58.3
Q ss_pred CCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHHh-cCCceEEEee--cCCCC-ceeEEEEEecCcch
Q 014199 246 LVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKN-QGKEAVFFEW--LSKRG-THANLQAVPIPTSK 315 (429)
Q Consensus 246 l~~GH~LIIP~~H~~s~~~------l~~e~~~Ei~~~~~~L~~~~~~-~g~~~v~~E~--~~~~~-~H~HihvVPvp~~~ 315 (429)
.-+-|.|+||...+.-+.+ -++.-|.+-+..+..+.+.+.. -.-..+...+ ..+++ .|+|||+=-+
T Consensus 70 ~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHIHIsCl---- 145 (250)
T TIGR00672 70 NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRSQNHFHIHISCI---- 145 (250)
T ss_pred CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCcccccceeeHhhC----
Confidence 4466999999999988774 2456677777777777666653 1122344441 22333 5888887654
Q ss_pred HHHHHHHHHHHHHHcCCcceecc
Q 014199 316 AAAVQDIFNLAAEKLGFKFLATK 338 (429)
Q Consensus 316 ~~~~~~~F~~~~~~~~~~~~~~~ 338 (429)
..++.......+...+..|..++
T Consensus 146 rpdv~~~L~~~~~~i~~~W~~lp 168 (250)
T TIGR00672 146 RPDVRKQLDNNLKKISSRWLPLP 168 (250)
T ss_pred CHHHHHHHHHhcccccCCceeCC
Confidence 34566667777777788898765
No 43
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=60.49 E-value=4.7 Score=25.44 Aligned_cols=23 Identities=30% Similarity=0.820 Sum_probs=18.2
Q ss_pred ccchhhhhccCcCCCCccccCCC
Q 014199 171 GVCLDFIIKGKCEKGPECSYKHS 193 (429)
Q Consensus 171 ~~c~~f~~~g~~~~Gr~~~~~h~ 193 (429)
.+|..|...|.|..|.+|.+.|.
T Consensus 4 ~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 4 KLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccChhhccCCccCCCCCcCccCC
Confidence 57999999999999999999985
No 44
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=60.04 E-value=56 Score=29.76 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=42.3
Q ss_pred EecCCCC--CCC--eEEE---EeccccCCCCCCCHHHHHHHHHHHHHHH-HHHHhcCCceEEEe-ecCCCC----ceeEE
Q 014199 240 ALPKGPL--VED--HVLV---IPVEHVPNTISTSPECEKELGRFQNSLM-MYYKNQGKEAVFFE-WLSKRG----THANL 306 (429)
Q Consensus 240 ~l~kgPl--~~G--H~LI---IP~~H~~s~~~l~~e~~~Ei~~~~~~L~-~~~~~~g~~~v~~E-~~~~~~----~H~Hi 306 (429)
..+..|+ .+| |++| +|+..-+...+++++..++|.+|.+..- .-+ ..+-+++.|. ..+.++ .|+|+
T Consensus 77 l~NDwPY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~~~f~~~~-~~~~~v~WF~N~~~LqSV~~v~H~HV 155 (158)
T PF12239_consen 77 LRNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQRTFVDRL-IPEDNVLWFKNWPSLQSVRAVEHIHV 155 (158)
T ss_pred EecCCCcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHHHHHHhhc-CCCccEEEEeCchhcCCcCcceEEEE
Confidence 3445664 455 8887 5777777789999999999999866332 222 2234677776 444453 36665
No 45
>PHA03008 hypothetical protein; Provisional
Probab=51.54 E-value=16 Score=34.58 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.1
Q ss_pred cccCCCCCCchHHHHHHHhcCCCeEeecC
Q 014199 3 VGISDSSNTDSTVSELVAEIKPRYHIAGS 31 (429)
Q Consensus 3 ~~~~~~~~gs~~i~~l~~~lkPRYHFa~~ 31 (429)
.|.+|...|+..+.+-+..+|||||.-|+
T Consensus 172 ~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh 200 (234)
T PHA03008 172 FAILDDDLACGDLFSKVIKIKPKFHIFNG 200 (234)
T ss_pred ccccccccCcHHHHHHHHHhCCcEEEeCC
Confidence 36777788998877777799999999986
No 46
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=50.61 E-value=53 Score=30.38 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=50.0
Q ss_pred CCCcccCCCCCCCcceEEEECCeEEEEecCCCCC-----------------------CC-eEEEE-eccccCCCCCCCHH
Q 014199 214 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLV-----------------------ED-HVLVI-PVEHVPNTISTSPE 268 (429)
Q Consensus 214 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~-----------------------~G-H~LII-P~~H~~s~~~l~~e 268 (429)
..|.||-.+........ .......++.+++|.. -| |=+|| --.|-.++.+|+.+
T Consensus 52 ~~cpfcpg~e~~~~~~~-~~~~~~rv~~N~fpal~~~~~~~~~~~i~~~~~~~~~~~~G~hEViIe~p~h~~~~~~~~~~ 130 (183)
T PF01087_consen 52 PMCPFCPGNEEVNEIFN-PDYWSVRVFPNKFPALSPENNYIRTDAIAKNGLFKSESGYGAHEVIIESPKHERTLADMSVK 130 (183)
T ss_dssp TT-TTSTT-CGCCCECT-T-SSSEEEEE-TT-SSBCCGTTTHB------SSS-EEE-BEEEEEEES-SSTT--GGGS-HH
T ss_pred CCCCcCCCCcccccccc-ccccchhhhhccchhhCccccCcccccccCCCcccccCCCCCeEEEEeCCCCCCChhhCCHH
Confidence 46999998755422110 0004455555555421 25 44444 44677889999988
Q ss_pred HHHHHHHH-HHHHHHHHHhcCC-ceEEEeecC---CC-CceeEEEEEecC
Q 014199 269 CEKELGRF-QNSLMMYYKNQGK-EAVFFEWLS---KR-GTHANLQAVPIP 312 (429)
Q Consensus 269 ~~~Ei~~~-~~~L~~~~~~~g~-~~v~~E~~~---~~-~~H~HihvVPvp 312 (429)
...+|... +..+..+.+..+. -+.+||+.+ +. ..|-|-|++-.|
T Consensus 131 ~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a~~ 180 (183)
T PF01087_consen 131 EIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIALP 180 (183)
T ss_dssp HHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEecCC
Confidence 88777754 4444444444343 466788322 22 369999998765
No 47
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=50.41 E-value=24 Score=33.99 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=44.8
Q ss_pred CCCCCeEEEEeccccCCCCCC------CHHHHHHHHHHHHHHHHHHHh-cCCceEEEe--ecCCCC-ceeEEEEEecCcc
Q 014199 245 PLVEDHVLVIPVEHVPNTIST------SPECEKELGRFQNSLMMYYKN-QGKEAVFFE--WLSKRG-THANLQAVPIPTS 314 (429)
Q Consensus 245 Pl~~GH~LIIP~~H~~s~~~l------~~e~~~Ei~~~~~~L~~~~~~-~g~~~v~~E--~~~~~~-~H~HihvVPvp~~ 314 (429)
+--+-|.|+||..-+.-+.+- .+.-|..-++-...+.+.+.+ -.-..+... ...+++ .|+|||+--+
T Consensus 41 ~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~gRsQdQLHIHisCl--- 117 (222)
T PF02611_consen 41 RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQYGRSQDQLHIHISCL--- 117 (222)
T ss_dssp SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GGG-S--S--EEEEEB---
T ss_pred CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCccCccccceEeEhhhc---
Confidence 344689999999999887752 456777777666666665543 112233333 123344 5888887765
Q ss_pred hHHHHHHHHHHHHHHcCCcceeccC
Q 014199 315 KAAAVQDIFNLAAEKLGFKFLATKS 339 (429)
Q Consensus 315 ~~~~~~~~F~~~~~~~~~~~~~~~~ 339 (429)
-.++...+...+...+..|..++.
T Consensus 118 -rp~v~~~L~~~~~~i~~~W~~lp~ 141 (222)
T PF02611_consen 118 -RPDVRAQLDAHAPQIGSQWQPLPL 141 (222)
T ss_dssp --HHHHHHHHCCCCC--SS-EE-TT
T ss_pred -CHHHHHHHHhhcCCCCCCCeECCc
Confidence 345555566655566777886554
No 48
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.67 E-value=47 Score=33.07 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=53.8
Q ss_pred CCCcceEEEECCe---EEEEec--C-CCCC--CCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCceEE
Q 014199 224 SVESHLIVSVGEY---YYCALP--K-GPLV--EDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKN-QGKEAVF 293 (429)
Q Consensus 224 ~~~~hlIvs~g~~---~yl~l~--k-gPl~--~GH~LIIP~~-H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~-~g~~~v~ 293 (429)
+.+...||+++.. -|+.+| | .+-+ .=|+|.|=.+ -+.|+.+|..+-+.=+.+..+..+.++.. +|.+ .
T Consensus 156 ~aE~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~--~ 233 (310)
T KOG3969|consen 156 KAEDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVD--P 233 (310)
T ss_pred cccccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCC--c
Confidence 3455566766532 467777 3 4433 4455544333 35667888888888888888777776653 3432 2
Q ss_pred Ee---ecCC-CC-ceeEEEEEecCcc
Q 014199 294 FE---WLSK-RG-THANLQAVPIPTS 314 (429)
Q Consensus 294 ~E---~~~~-~~-~H~HihvVPvp~~ 314 (429)
.+ ..-. .+ .|+|+|+++|-.+
T Consensus 234 dqlrmf~HYqPSyYHlHVHi~nik~~ 259 (310)
T KOG3969|consen 234 DQLRMFFHYQPSYYHLHVHIVNIKHD 259 (310)
T ss_pred hhEEEEEEecCceEEEEEEEEeccCC
Confidence 22 1112 23 5999999998655
No 49
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=38.68 E-value=1.1e+02 Score=28.47 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHH-hcCC-ceEEEeecC-CCCceeEEEEEecCcch
Q 014199 271 KELGRFQNSLMMYYK-NQGK-EAVFFEWLS-KRGTHANLQAVPIPTSK 315 (429)
Q Consensus 271 ~Ei~~~~~~L~~~~~-~~g~-~~v~~E~~~-~~~~H~HihvVPvp~~~ 315 (429)
+++.+|.+.....|. ..|. +++..-.-. -..+|+|+-+||+-.+.
T Consensus 98 e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 98 EQQKRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVPIDEDG 145 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEeeccccc
Confidence 455666665555655 4563 444333112 23799999999997663
No 50
>KOG4138 consensus Unchracterized conserved protein (estrogen up-regulated protein E2IG2 in human) [General function prediction only]
Probab=28.89 E-value=18 Score=29.63 Aligned_cols=21 Identities=33% Similarity=0.865 Sum_probs=15.4
Q ss_pred cccccccccCChHHHHHHHHHHHhcCcc
Q 014199 397 DKADWRNCMLGKEEETKMVEDFKKRFEA 424 (429)
Q Consensus 397 ~r~~Wr~c~~~~eeE~~~~~~Fk~~fk~ 424 (429)
+--|||+|+ ..+++||+-|++
T Consensus 56 ~t~DWRqC~-------~qm~~FrkCwek 76 (96)
T KOG4138|consen 56 QTQDWRQCQ-------PQMQAFRKCWEK 76 (96)
T ss_pred hhccHHHHH-------HHHHHHHHHHHH
Confidence 346899997 456788887764
No 51
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=27.49 E-value=24 Score=35.70 Aligned_cols=55 Identities=29% Similarity=0.728 Sum_probs=36.8
Q ss_pred cceeeeccCCCCCCCc-cccccCchhh--hhhhcccchhhhhccCcCCCCccccCCCCCCC
Q 014199 140 MCFKFIYSGSCPRGEK-CNFRHDTDAR--EQCLRGVCLDFIIKGKCEKGPECSYKHSLQND 197 (429)
Q Consensus 140 ~c~~~~~~g~~~~g~~-~~~~~~~~~~--~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~ 197 (429)
||++|. -|.|.+|+. |+|.|-+.+. +..---.|.|++. |.|.+- +|+|-|.++..
T Consensus 39 VCReF~-rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~k-grCsR~-nCkylHpp~hl 96 (331)
T KOG2494|consen 39 VCREFL-RNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQK-GRCSRE-NCKYLHPPQHL 96 (331)
T ss_pred HHHHHH-hccccCCCccccccCCCCCCCccCCeEEEEecccc-CccCcc-cceecCCChhh
Confidence 788875 578999999 9998886533 2222235888764 444432 39998887763
No 52
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=27.03 E-value=26 Score=33.19 Aligned_cols=24 Identities=33% Similarity=0.866 Sum_probs=22.4
Q ss_pred cceeeeccCCCCCCCccccccCch
Q 014199 140 MCFKFIYSGSCPRGEKCNFRHDTD 163 (429)
Q Consensus 140 ~c~~~~~~g~~~~g~~~~~~~~~~ 163 (429)
||++|..+|-|-=|+.|+|.|+..
T Consensus 143 VCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 143 VCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred cccchhhcccccCCchhhhhhhhh
Confidence 899999999999999999999964
No 53
>PRK09925 leu operon leader peptide; Provisional
Probab=26.46 E-value=30 Score=21.86 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=8.2
Q ss_pred Cccceeecccc
Q 014199 47 VHVTRFLGLAP 57 (429)
Q Consensus 47 ~~vTRFi~La~ 57 (429)
.|++||++|--
T Consensus 2 ~hivrf~glll 12 (28)
T PRK09925 2 THIVRFIGLLL 12 (28)
T ss_pred ceEEEEeeeee
Confidence 57899988753
No 54
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=25.91 E-value=35 Score=34.32 Aligned_cols=27 Identities=37% Similarity=0.813 Sum_probs=24.0
Q ss_pred CcceeeeccCCCCCCCccccccCchhh
Q 014199 139 KMCFKFIYSGSCPRGEKCNFRHDTDAR 165 (429)
Q Consensus 139 ~~c~~~~~~g~~~~g~~~~~~~~~~~~ 165 (429)
..|..|+.+|.|+-|..|.|.|.....
T Consensus 178 ~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 178 KLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred cCCCccccCCCCCCCCcCeecCCCccc
Confidence 489999999999999999999987544
No 55
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=23.93 E-value=39 Score=29.95 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=13.2
Q ss_pred hHHHHHHHhcCCCeEee
Q 014199 13 STVSELVAEIKPRYHIA 29 (429)
Q Consensus 13 ~~i~~l~~~lkPRYHFa 29 (429)
..+-..+..|+|||||+
T Consensus 83 ~~~~~~a~~l~~ry~fs 99 (142)
T COG5573 83 HEEVVQASRLAPRYHFS 99 (142)
T ss_pred HHHHHHHhccccccCch
Confidence 34556678899999998
No 56
>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme. This domain is always found in association with a metallo-phosphoesterase domain IPR004843 from INTERPRO. RNA lariat debranching enzyme is capable of digesting a variety of branched nucleic acid substrates and multicopy single-stranded DNAs. The enzyme degrades intron lariat structures during splicing. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0006397 mRNA processing
Probab=22.88 E-value=62 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCccceeeccccCCCcccceeeEecCCCcccC
Q 014199 46 AVHVTRFLGLAPVGNKEKQKFIHALSPTPAAT 77 (429)
Q Consensus 46 ~~~vTRFi~La~~gn~~K~Kw~yAf~i~p~~~ 77 (429)
....|||++|-+.+- ++++|--+.|.+...
T Consensus 6 ~~~~TkFLALDKClP--~R~FLqviei~~~~~ 35 (145)
T PF05011_consen 6 TNKTTKFLALDKCLP--RRDFLQVIEIPPDSS 35 (145)
T ss_pred CCCccEEEeccccCC--CCcceEEEEecCCCC
Confidence 577899999999987 467999998876553
No 57
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=22.87 E-value=6.9e+02 Score=24.09 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=42.5
Q ss_pred eEEEEeccccCCCCCC------CHHHHHHHHHHHHHHHHHHHhcCCc----eEEEe--ecCCC-CceeEEEEEecCcchH
Q 014199 250 HVLVIPVEHVPNTIST------SPECEKELGRFQNSLMMYYKNQGKE----AVFFE--WLSKR-GTHANLQAVPIPTSKA 316 (429)
Q Consensus 250 H~LIIP~~H~~s~~~l------~~e~~~Ei~~~~~~L~~~~~~~g~~----~v~~E--~~~~~-~~H~HihvVPvp~~~~ 316 (429)
..|++|..|+.-+.+- ++.-+..-+..+.-+.+ ++|.. -|+.- ..+++ ..|+|||+--+.-
T Consensus 75 QyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~---kyg~~ipd~dvsLaINs~~gRtQdqlHIHISCisp--- 148 (252)
T COG2134 75 QYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSK---KYGNPIPDSDVSLAINSKNGRTQDQLHIHISCISP--- 148 (252)
T ss_pred eeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHH---HhCCCCCccceEEEecCccCccccceEEEEEecCc---
Confidence 6788898888876641 22223333333322222 33331 23333 12334 3688888877643
Q ss_pred HHHHHHHHHHHHHcCCcceecc
Q 014199 317 AAVQDIFNLAAEKLGFKFLATK 338 (429)
Q Consensus 317 ~~~~~~F~~~~~~~~~~~~~~~ 338 (429)
++.........+....|..++
T Consensus 149 -~~~~~L~n~~~~~~~~W~pLP 169 (252)
T COG2134 149 -DVREQLDNNLANIYSRWKPLP 169 (252)
T ss_pred -hHHHHHHhhhhhhhhCcccCC
Confidence 344455555555556687654
No 58
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=22.59 E-value=1.5e+02 Score=26.59 Aligned_cols=49 Identities=8% Similarity=0.174 Sum_probs=25.2
Q ss_pred EeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEeecCCCCce
Q 014199 254 IPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG-KEAVFFEWLSKRGTH 303 (429)
Q Consensus 254 IP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g-~~~v~~E~~~~~~~H 303 (429)
|+++..|.+.-||-+.++.-.++..-+...=...| ++-.|++ .+.+..|
T Consensus 94 vALREePKi~LLPl~~y~~pe~V~niIN~LrnkegvYG~C~~~-e~~~~i~ 143 (150)
T PHA03073 94 VALREEPKITLLPLVFYEDPEEVINIINLLRNKEGVYGSCFYK-ENDQSID 143 (150)
T ss_pred hhhccCCceEEechhhhcCHHHHHHHHHhhhhhcCccceEEEe-eCCcEEE
Confidence 45555666666665555544444433333333455 4667787 3444333
No 59
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.18 E-value=4.4e+02 Score=23.16 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEeecCCCCceeEEEEEecCcchHHHHHHHHHH
Q 014199 248 EDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNL 325 (429)
Q Consensus 248 ~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~~v~~E~~~~~~~H~HihvVPvp~~~~~~~~~~F~~ 325 (429)
.-|++++|+.=...+.. + -+..+++.|+...+..++.++-++. ...|+|+-+-.-|..-...+-..++.
T Consensus 13 ~yH~v~~~kyRr~vl~~---~---~~~~l~~~l~~~~~~~~~eI~a~~v---~pdHVHlli~~pp~~~~~~~~~~lkg 81 (136)
T COG1943 13 KYHFVWVPKYRRKVLTG---E---VLNLLRSILREVAEQKNFEILAMEV---MPDHVHLLITLPPKDSVSSIVNRLKG 81 (136)
T ss_pred cEEEEEeccCchHhhhH---h---HHHHHHHHHHHHHHhCCCEEEEEEe---cCCEEEEEEecCCCCCHHHHHHHHHh
Confidence 45777777766554432 1 2334555666666677787776662 24588887775566655554444443
No 60
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=21.23 E-value=56 Score=33.34 Aligned_cols=51 Identities=31% Similarity=0.759 Sum_probs=40.4
Q ss_pred cceeeeccCCCCCCCccccccCchhhhhhhcccchhhhhccCcCCCCccccCCCC
Q 014199 140 MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSL 194 (429)
Q Consensus 140 ~c~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~ 194 (429)
+|+. .-.|.|.+|+.|.|.|...-. ..+.|.-|...|-|..|.+|-|.|..
T Consensus 79 vcK~-~l~glC~kgD~C~Flhe~~~~---k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 79 VCKH-WLRGLCKKGDQCEFLHEYDLT---KMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred eehh-hhhhhhhccCcCcchhhhhhc---ccccccccccccccccccCCcccCCC
Confidence 5643 346889999999999987322 22568889999999999999999887
No 61
>PRK14744 leu operon leader peptide; Provisional
Probab=20.64 E-value=37 Score=21.60 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=6.9
Q ss_pred Cccceeeccc
Q 014199 47 VHVTRFLGLA 56 (429)
Q Consensus 47 ~~vTRFi~La 56 (429)
.|++||++|-
T Consensus 2 ~~i~Rf~glL 11 (28)
T PRK14744 2 SHIVRFTGLL 11 (28)
T ss_pred ceeeeehhHH
Confidence 4678887764
No 62
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=20.29 E-value=68 Score=34.67 Aligned_cols=48 Identities=29% Similarity=0.595 Sum_probs=36.7
Q ss_pred CCCCCCccccccC-chhh------hhhhcccchhhhhccCcCCCCccccCCCCCCC
Q 014199 149 SCPRGEKCNFRHD-TDAR------EQCLRGVCLDFIIKGKCEKGPECSYKHSLQND 197 (429)
Q Consensus 149 ~~~~g~~~~~~~~-~~~~------~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~ 197 (429)
-|-+++.|.|.|- ..++ =.|-+-.|++|.. |+|.+|..|-+.|..-++
T Consensus 208 ~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEc 262 (528)
T KOG1595|consen 208 RSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFEC 262 (528)
T ss_pred cCCCcccCCccCCCcccccCCcccccccCccCccccc-CCCCCCCccccccceehh
Confidence 4778889999993 3333 2344667999986 999999999999987754
Done!