Query 014200
Match_columns 429
No_of_seqs 205 out of 3265
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0472 Leucine-rich repeat pr 100.0 5.4E-43 1.2E-47 306.9 -2.2 419 2-425 2-478 (565)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-36 5.3E-41 319.5 25.1 374 44-422 187-589 (968)
3 PLN00113 leucine-rich repeat r 100.0 3.8E-36 8.3E-41 318.0 25.9 403 3-419 158-608 (968)
4 KOG4194 Membrane glycoprotein 100.0 4.1E-37 8.9E-42 281.7 6.9 395 11-428 54-460 (873)
5 KOG4194 Membrane glycoprotein 100.0 3E-36 6.6E-41 276.1 8.1 368 44-424 50-435 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 5.4E-36 1.2E-40 263.1 -5.1 397 7-421 66-543 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.1E-34 2.3E-39 268.2 0.1 365 8-422 6-379 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 1.2E-33 2.7E-38 261.1 -2.1 343 44-424 6-358 (1255)
9 KOG0618 Serine/threonine phosp 100.0 3.3E-30 7.1E-35 248.3 1.8 384 11-427 23-429 (1081)
10 KOG0618 Serine/threonine phosp 99.9 2.8E-27 6E-32 228.3 -2.6 378 4-416 40-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.5E-23 5.5E-28 221.2 25.0 297 70-416 591-904 (1153)
12 PRK15387 E3 ubiquitin-protein 99.9 1.7E-23 3.6E-28 207.7 18.9 263 69-399 202-465 (788)
13 PRK15387 E3 ubiquitin-protein 99.9 1.6E-23 3.4E-28 207.9 17.5 259 91-419 201-459 (788)
14 KOG4237 Extracellular matrix p 99.9 2.7E-26 5.9E-31 201.8 -3.2 261 13-288 50-359 (498)
15 PLN03210 Resistant to P. syrin 99.9 1.6E-20 3.4E-25 200.0 23.9 331 2-391 551-904 (1153)
16 PRK15370 E3 ubiquitin-protein 99.9 7.7E-21 1.7E-25 189.9 16.1 246 46-311 179-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 1.3E-20 2.9E-25 188.2 14.5 247 9-289 178-429 (754)
18 KOG4237 Extracellular matrix p 99.8 1.3E-21 2.7E-26 172.7 -1.8 288 70-428 69-367 (498)
19 KOG0617 Ras suppressor protein 99.7 7.8E-20 1.7E-24 143.5 -3.1 162 41-203 29-192 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.7E-18 1E-22 157.7 6.3 109 277-417 195-319 (319)
21 KOG0617 Ras suppressor protein 99.7 5.3E-19 1.2E-23 138.9 -4.6 159 65-224 30-190 (264)
22 cd00116 LRR_RI Leucine-rich re 99.6 3.8E-16 8.3E-21 144.9 5.9 243 44-286 22-318 (319)
23 KOG0532 Leucine-rich repeat (L 99.4 7.4E-15 1.6E-19 136.0 -4.6 191 139-331 77-267 (722)
24 KOG0532 Leucine-rich repeat (L 99.4 1.6E-14 3.4E-19 133.9 -3.1 207 2-222 43-249 (722)
25 KOG1259 Nischarin, modulator o 99.4 2.2E-13 4.7E-18 117.0 2.5 133 181-314 281-415 (490)
26 KOG1259 Nischarin, modulator o 99.3 3.8E-13 8.3E-18 115.5 2.6 132 251-422 282-416 (490)
27 KOG1909 Ran GTPase-activating 99.3 1.3E-13 2.9E-18 120.7 -0.3 225 44-287 29-310 (382)
28 COG4886 Leucine-rich repeat (L 99.3 4.5E-12 9.7E-17 121.1 10.0 194 96-314 98-293 (394)
29 COG4886 Leucine-rich repeat (L 99.3 2.8E-12 6.1E-17 122.4 8.2 195 72-268 97-292 (394)
30 KOG3207 Beta-tubulin folding c 99.3 5.1E-13 1.1E-17 120.3 0.3 203 64-266 117-339 (505)
31 KOG1909 Ran GTPase-activating 99.3 2E-13 4.3E-18 119.6 -2.7 238 63-311 25-311 (382)
32 KOG3207 Beta-tubulin folding c 99.3 1E-12 2.2E-17 118.4 1.0 102 207-308 121-232 (505)
33 PF14580 LRR_9: Leucine-rich r 99.2 8.7E-12 1.9E-16 102.5 5.2 122 44-167 18-147 (175)
34 PF14580 LRR_9: Leucine-rich r 99.2 2.9E-11 6.2E-16 99.4 5.7 124 250-409 16-146 (175)
35 KOG4658 Apoptotic ATPase [Sign 99.0 4.2E-10 9E-15 115.3 6.8 220 44-265 544-782 (889)
36 KOG0531 Protein phosphatase 1, 99.0 7.8E-11 1.7E-15 112.8 -0.0 241 67-312 71-319 (414)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.6E-14 110.9 6.8 197 45-243 523-730 (889)
38 KOG0531 Protein phosphatase 1, 98.9 1.8E-10 3.8E-15 110.4 -0.3 214 186-418 74-290 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 4.2E-09 9.1E-14 71.2 2.7 59 357-417 1-61 (61)
40 KOG1859 Leucine-rich repeat pr 98.7 2.6E-10 5.7E-15 109.2 -5.4 180 200-420 102-294 (1096)
41 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.2E-13 69.3 3.6 57 46-102 2-60 (61)
42 PF12799 LRR_4: Leucine Rich r 98.6 2.3E-08 5E-13 61.8 2.6 41 380-422 1-41 (44)
43 PLN03150 hypothetical protein; 98.6 1.1E-07 2.4E-12 95.5 7.5 106 277-419 420-529 (623)
44 KOG2982 Uncharacterized conser 98.5 3.6E-08 7.9E-13 85.2 2.2 199 69-267 46-263 (418)
45 KOG1859 Leucine-rich repeat pr 98.5 1.4E-09 3E-14 104.4 -7.8 197 88-290 81-294 (1096)
46 KOG4579 Leucine-rich repeat (L 98.5 1.1E-08 2.5E-13 78.1 -1.8 112 10-131 28-140 (177)
47 PLN03150 hypothetical protein; 98.4 7.2E-07 1.6E-11 89.7 9.0 102 70-171 420-526 (623)
48 KOG2120 SCF ubiquitin ligase, 98.4 8.3E-09 1.8E-13 89.1 -4.7 124 47-170 187-323 (419)
49 KOG2120 SCF ubiquitin ligase, 98.4 2.6E-08 5.6E-13 86.1 -2.8 62 348-409 304-369 (419)
50 COG5238 RNA1 Ran GTPase-activa 98.4 1.5E-07 3.3E-12 80.4 1.7 156 111-266 89-285 (388)
51 KOG4579 Leucine-rich repeat (L 98.3 5.1E-08 1.1E-12 74.5 -1.1 110 277-423 29-141 (177)
52 KOG2982 Uncharacterized conser 98.3 3.9E-07 8.4E-12 79.0 2.5 198 208-419 46-263 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.3 1.9E-07 4.1E-12 79.8 0.3 164 224-419 86-286 (388)
54 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.8E-11 70.2 6.0 123 47-170 21-150 (233)
55 PRK15386 type III secretion pr 98.2 8.2E-06 1.8E-10 75.8 9.4 135 204-391 49-188 (426)
56 PF12799 LRR_4: Leucine Rich r 98.2 3.4E-06 7.4E-11 52.1 4.2 38 46-83 2-39 (44)
57 PRK15386 type III secretion pr 98.1 1.3E-05 2.9E-10 74.4 7.7 118 180-312 48-170 (426)
58 KOG1644 U2-associated snRNP A' 98.0 9.4E-06 2E-10 66.6 5.9 104 46-150 43-153 (233)
59 PF13306 LRR_5: Leucine rich r 97.9 1.3E-05 2.9E-10 63.3 4.3 118 40-163 7-129 (129)
60 KOG4341 F-box protein containi 97.9 6.8E-07 1.5E-11 81.0 -3.6 66 349-416 364-437 (483)
61 KOG3665 ZYG-1-like serine/thre 97.9 1.7E-05 3.6E-10 79.9 5.4 107 66-173 146-263 (699)
62 PF13306 LRR_5: Leucine rich r 97.9 6.7E-05 1.5E-09 59.2 7.6 103 4-123 7-112 (129)
63 KOG3665 ZYG-1-like serine/thre 97.9 1.4E-05 3E-10 80.5 4.4 102 68-170 122-230 (699)
64 KOG4341 F-box protein containi 97.8 2E-06 4.3E-11 78.1 -2.7 284 10-303 139-457 (483)
65 KOG2123 Uncharacterized conser 97.2 1.4E-05 3.1E-10 68.9 -4.1 83 229-312 18-102 (388)
66 KOG2123 Uncharacterized conser 97.2 3.5E-05 7.5E-10 66.6 -2.3 81 9-104 19-101 (388)
67 KOG2739 Leucine-rich acidic nu 96.9 0.0004 8.6E-09 59.7 1.1 102 45-147 43-153 (260)
68 PF00560 LRR_1: Leucine Rich R 96.7 0.00064 1.4E-08 34.9 0.6 17 382-398 2-18 (22)
69 KOG1947 Leucine rich repeat pr 96.7 0.00055 1.2E-08 67.3 0.7 130 4-144 183-328 (482)
70 KOG2739 Leucine-rich acidic nu 96.6 0.0012 2.6E-08 56.9 2.0 86 64-150 39-129 (260)
71 KOG1947 Leucine rich repeat pr 96.5 0.00078 1.7E-08 66.2 0.5 105 67-171 187-306 (482)
72 PF13504 LRR_7: Leucine rich r 95.8 0.0057 1.2E-07 29.0 1.2 14 405-420 3-16 (17)
73 KOG4308 LRR-containing protein 95.7 0.00025 5.3E-09 68.5 -7.1 59 359-419 235-304 (478)
74 PF00560 LRR_1: Leucine Rich R 95.5 0.0057 1.2E-07 31.3 0.6 19 404-424 1-19 (22)
75 PF13504 LRR_7: Leucine rich r 95.4 0.0066 1.4E-07 28.8 0.8 17 380-396 1-17 (17)
76 KOG4308 LRR-containing protein 95.2 0.00024 5.2E-09 68.6 -9.0 179 11-197 89-303 (478)
77 smart00369 LRR_TYP Leucine-ric 94.4 0.021 4.5E-07 30.5 1.1 21 403-425 2-22 (26)
78 smart00370 LRR Leucine-rich re 94.4 0.021 4.5E-07 30.5 1.1 21 403-425 2-22 (26)
79 smart00370 LRR Leucine-rich re 93.6 0.05 1.1E-06 29.0 1.6 22 9-30 2-23 (26)
80 smart00369 LRR_TYP Leucine-ric 93.6 0.05 1.1E-06 29.0 1.6 22 9-30 2-23 (26)
81 KOG0473 Leucine-rich repeat pr 93.1 0.0026 5.6E-08 53.8 -5.8 86 64-149 38-123 (326)
82 PF13516 LRR_6: Leucine Rich r 93.0 0.025 5.5E-07 29.5 -0.2 16 379-394 1-16 (24)
83 KOG0473 Leucine-rich repeat pr 91.9 0.0038 8.2E-08 52.9 -6.4 87 41-127 38-124 (326)
84 smart00364 LRR_BAC Leucine-ric 91.1 0.15 3.2E-06 27.0 1.3 18 380-397 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 83.4 0.73 1.6E-05 24.6 1.2 16 403-420 2-17 (26)
86 smart00368 LRR_RI Leucine rich 82.2 1.1 2.4E-05 24.3 1.7 15 380-394 2-16 (28)
87 smart00367 LRR_CC Leucine-rich 78.6 1.5 3.2E-05 23.2 1.4 16 379-394 1-17 (26)
88 KOG3864 Uncharacterized conser 73.9 0.58 1.3E-05 39.2 -1.5 35 160-194 101-135 (221)
89 KOG3864 Uncharacterized conser 72.6 1.1 2.4E-05 37.6 -0.1 81 277-390 103-186 (221)
90 KOG3763 mRNA export factor TAP 70.7 2.2 4.7E-05 41.4 1.3 60 357-419 218-284 (585)
91 KOG4242 Predicted myosin-I-bin 64.6 59 0.0013 31.5 9.1 59 359-419 415-482 (553)
92 KOG3763 mRNA export factor TAP 56.8 4.4 9.4E-05 39.5 0.5 63 227-289 215-284 (585)
93 PF05725 FNIP: FNIP Repeat; I 33.8 54 0.0012 19.8 2.7 29 254-282 13-41 (44)
94 KOG3735 Tropomodulin and leiom 24.3 34 0.00073 31.4 0.8 69 349-419 190-269 (353)
95 TIGR00864 PCC polycystin catio 23.5 57 0.0012 38.9 2.4 31 363-393 1-32 (2740)
No 1
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.4e-43 Score=306.93 Aligned_cols=419 Identities=48% Similarity=0.723 Sum_probs=366.4
Q ss_pred hHHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCC
Q 014200 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS 81 (429)
Q Consensus 2 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~ 81 (429)
+++.+.+++--.++++++.+..+|..+......-.+.+.||.-..++.+.++.|.+..+.+.+.++..++++++++|.+.
T Consensus 2 ~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~ 81 (565)
T KOG0472|consen 2 QRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS 81 (565)
T ss_pred chHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhh
Confidence 56788899999999999999999999998887778899999999999999999999999889999999999999999999
Q ss_pred CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCC
Q 014200 82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161 (429)
Q Consensus 82 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 161 (429)
.+|++++.+..++.+++++|.+..+|+.++...++..++++.|.+..+++.++.+..+..++..+|++.++|.++..+.+
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK 161 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCC
Q 014200 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241 (429)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 241 (429)
+..+++.+|.+...++..+. +..|++++...|-++.+|+.++.+.+|..|++..|++..+| .|.+|..|++++++.|.
T Consensus 162 l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ 239 (565)
T ss_pred HHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH
Confidence 99999999999999888555 99999999999999999999999999999999999999998 79999999999999999
Q ss_pred CCccChhh-cCCCCCCEEECCCCcCccccchhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccC
Q 014200 242 LSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319 (429)
Q Consensus 242 i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 319 (429)
+.-+|... ..++++.+||+.+|+++++|...+..+ |+++|+++|.++++|..++++ .|+.|.+.||++.++...+..
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~ 318 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIIS 318 (565)
T ss_pred HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHc
Confidence 99888765 589999999999999999999998877 999999999999999999999 999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCcccc-----cCCh-hhHHhhhhccc--------------------------cccccccc---
Q 014200 320 GPTPALLKYLRSRLPENEDSEA-----STTK-EDLITMATRLS--------------------------VTSKELSL--- 364 (429)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~--------------------------~~L~~l~l--- 364 (429)
+++.+.+.|+...+.....+.. .+.. ........... .-++.+++
T Consensus 319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskN 398 (565)
T KOG0472|consen 319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKN 398 (565)
T ss_pred ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccc
Confidence 9999999999873322222111 0000 00000000000 11233333
Q ss_pred ---------------------cCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccccc
Q 014200 365 ---------------------EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGC 423 (429)
Q Consensus 365 ---------------------~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~ 423 (429)
++|.++-+|..+..++.|+.|++++|-+.++|.+++.+..||.|| +++|+|.++|.|
T Consensus 399 qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln--lS~NrFr~lP~~ 476 (565)
T KOG0472|consen 399 QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN--LSFNRFRMLPEC 476 (565)
T ss_pred hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec--ccccccccchHH
Confidence 344444444456677889999999999999999999999999999 999999999998
Q ss_pred cc
Q 014200 424 YL 425 (429)
Q Consensus 424 ~~ 425 (429)
.+
T Consensus 477 ~y 478 (565)
T KOG0472|consen 477 LY 478 (565)
T ss_pred Hh
Confidence 64
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-36 Score=319.50 Aligned_cols=374 Identities=25% Similarity=0.326 Sum_probs=194.8
Q ss_pred cCCccEEEcCCCCCC-ccchhccCCCCCCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEe
Q 014200 44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFD 120 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~ 120 (429)
+++|++|++++|.+. .+|..+.++++|+.|++++|.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|+
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 455555555555544 34445555555555555555544 34455555555555555555444 3445555555555555
Q ss_pred cCCCCCC-cCCccccCCCCCCEEEcCCCccc-cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-
Q 014200 121 CSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN- 197 (429)
Q Consensus 121 l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~- 197 (429)
+++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 5555554 34445555555555555555554 34444555555666666555555433344555556666666666554
Q ss_pred cCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccccchhh--
Q 014200 198 GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEAC-- 273 (429)
Q Consensus 198 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-- 273 (429)
.+|..+..+++|+.|++++|.+. .+|..+..+++++.+++++|.++ .+|..+..+++|+.|++++|.+++..+..+
T Consensus 347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 34555555566666666666554 34444555555555666555554 345556666666666666666553222211
Q ss_pred ccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccc---------------cCCCcHHHHHHHHhcCCCCC
Q 014200 274 QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL---------------VNGPTPALLKYLRSRLPENE 337 (429)
Q Consensus 274 ~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 337 (429)
...|+.+++++|.+++ ++..+..+++|+.|++++|.+.+..... +.+..+..+..+.. +....
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~ 505 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLK 505 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc-cCEEE
Confidence 1236666666666655 3444555666666666666554211110 11122222211111 00000
Q ss_pred cccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCC
Q 014200 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTN 415 (429)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n 415 (429)
++.. .............++|+.|++++|.++ .+|..+..++.|+.|||++|++++ +|..+..+++|+.|+ +++|
T Consensus 506 Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~--ls~N 581 (968)
T PLN00113 506 LSEN--KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN--ISHN 581 (968)
T ss_pred CcCC--cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe--ccCC
Confidence 0000 000000011223356666677777666 456666666777777777777665 666666677777777 7777
Q ss_pred cccc-ccc
Q 014200 416 KESC-ISG 422 (429)
Q Consensus 416 ~i~~-i~~ 422 (429)
++++ +|+
T Consensus 582 ~l~~~~p~ 589 (968)
T PLN00113 582 HLHGSLPS 589 (968)
T ss_pred cceeeCCC
Confidence 7665 554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-36 Score=318.00 Aligned_cols=403 Identities=23% Similarity=0.295 Sum_probs=246.5
Q ss_pred HHHHHhhhcCeeeccCCCCccCChhhhhhhccc------------cCCCcccccCCccEEEcCCCCCC-ccchhccCCCC
Q 014200 3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEA------------GEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPL 69 (429)
Q Consensus 3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~ 69 (429)
..+..+++|++|++++|.+....+..+..+..+ ..+..+..+++|++|++++|.+. .+|..+.++++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 345666677777777776642222222222222 12344566777888888877776 56667777788
Q ss_pred CCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEecCCCCCC-cCCccccCCCCCCEEEcCC
Q 014200 70 LTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASN 146 (429)
Q Consensus 70 L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~ 146 (429)
|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|+.|++++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 888888777765 55667777777777777777665 45666677777777777777665 4555666667777777777
Q ss_pred Cccc-cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-cCCc-----------------------
Q 014200 147 NCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPE----------------------- 201 (429)
Q Consensus 147 ~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~----------------------- 201 (429)
|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+. .+|.
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 6665 44555666666666666666655433334555566666666655553 2333
Q ss_pred -cccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccc-cchhhcccc
Q 014200 202 -TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRL 277 (429)
Q Consensus 202 -~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L 277 (429)
.+..+++|+.|++++|.+. .+|..+..++.|+.+++++|.++. ++..+..+++|+.|++++|.+.+. +......+|
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L 477 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence 3444455555555555554 334445555555556665555552 344445556666666666655432 222222347
Q ss_pred CEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccc
Q 014200 278 SVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356 (429)
Q Consensus 278 ~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (429)
+.|++++|.+++ +|..+.++++|+.|++++|.+.. ..+..+..+.. +....++.. .........+...
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~-L~~L~Ls~N--~l~~~~p~~~~~l 546 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG--------EIPDELSSCKK-LVSLDLSHN--QLSGQIPASFSEM 546 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCccee--------eCChHHcCccC-CCEEECCCC--cccccCChhHhCc
Confidence 777887777765 56667777888888888887753 22222221111 111111111 1111111223345
Q ss_pred cccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200 357 VTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 357 ~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
++|+.|++++|+++ .+|..+..++.|+.|++++|++.+ +|+. +....+.... +.+|+.-|
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~--~~~n~~lc 608 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASA--VAGNIDLC 608 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhh--hcCCcccc
Confidence 78999999999999 799999999999999999999998 8864 4445555666 77777443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-37 Score=281.73 Aligned_cols=395 Identities=25% Similarity=0.342 Sum_probs=253.8
Q ss_pred cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcchhhhC
Q 014200 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGE 89 (429)
Q Consensus 11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~ 89 (429)
.+.||++++.+..+.....++.. .+..++|++++|++..+.. .|.++++|+++++..|.++.+|.....
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~l----------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~ 123 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFL----------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHE 123 (873)
T ss_pred ceeeecCccccccccccccCCcC----------ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccccc
Confidence 34577888777766444433321 1234567777777665533 466777777777777777766665555
Q ss_pred CCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccCC-ccccccCCCcEEE
Q 014200 90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD 166 (429)
Q Consensus 90 l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~ 166 (429)
..+|+.|++.+|.|.++ .+.+..++.|+.++++.|.++.++. ++..-.++++|++++|+++.+. ..|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 56677777777766655 2345666777777777777776654 3334456777777777776553 3355566677777
Q ss_pred ccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCc
Q 014200 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSA 244 (429)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~ 244 (429)
++.|.++.++...|..+++|+.|++..|++..+ -..|+.+++|+.+.+..|.+..+ ..+|..+.++++|+|..|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 777777777776666677777777777766554 34566677777777777777665 3456667777777777777766
Q ss_pred c-ChhhcCCCCCCEEECCCCcCccccc--hhhccccCEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCCCccccccCC
Q 014200 245 L-PAELGKLSKLGTLDLHSNQLKEYCV--EACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNG 320 (429)
Q Consensus 245 ~-~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 320 (429)
+ ..++-++.+|+.|++++|.|..+.. ..+..+|+.|+|++|.++.+++ .|..+..|++|+++.|.+..+.+..|.|
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 5 3455666777777777777664433 3344457777777777777633 4666667777777777776666655554
Q ss_pred CcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChh-hhccCCCcEEeCCCCcccc-CChh
Q 014200 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQE-LPPE 398 (429)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~-~~~~ 398 (429)
... ++-+ -+....++++..+ .+..+...+.|+.|++.||+++.+|.- +..+++|+.|||.+|.|.. -|.+
T Consensus 364 lss--L~~L--dLr~N~ls~~IED----aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 364 LSS--LHKL--DLRSNELSWCIED----AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred hhh--hhhh--cCcCCeEEEEEec----chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence 221 1111 1111112222222 334455567889999999999988764 5588999999999999887 6777
Q ss_pred hcccccceeeccccCCCccccccccccccc
Q 014200 399 LSSCASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 399 l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
|..+ .|++|- +..-+|-| ||-++|+
T Consensus 436 Fe~m-~Lk~Lv--~nSssflC--DCql~Wl 460 (873)
T KOG4194|consen 436 FEPM-ELKELV--MNSSSFLC--DCQLKWL 460 (873)
T ss_pred cccc-hhhhhh--hcccceEE--eccHHHH
Confidence 8877 888887 66655555 8998885
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-36 Score=276.06 Aligned_cols=368 Identities=23% Similarity=0.267 Sum_probs=296.5
Q ss_pred cCC-ccEEEcCCCCCCccchh-ccC-C-CCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCccccCCCCcCE
Q 014200 44 AVD-LQKLILAHNNIEKLKED-LRN-L-PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVK 118 (429)
Q Consensus 44 ~~~-L~~L~l~~~~i~~l~~~-~~~-~-~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~ 118 (429)
|+. -+.|+.+++.+..+... +.. + +.-+.|++++|.+.++ +..|.++++|+.+++.+|.++.+|.......+++.
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 443 45578888877765321 222 2 3456799999999977 45789999999999999999999997777888999
Q ss_pred EecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccC
Q 014200 119 FDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196 (429)
Q Consensus 119 L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 196 (429)
|++.+|.+.++. +.+..++.|+.++++.|.+++++. .|..-.++++|++++|.++++..+.|..+.+|.++.+++|++
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 999999999774 467888999999999999998764 466668999999999999999999999999999999999999
Q ss_pred CcCCc-cccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCCCcCccccchhh
Q 014200 197 NGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEAC 273 (429)
Q Consensus 197 ~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~ 273 (429)
+.+|. .|.++++|+.|++..|.+..+ ...|.++++|+.|.+..|.+..+- ..|..+.++++|++..|++..+.....
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 99875 466799999999999999866 578999999999999999999774 458889999999999999997765533
Q ss_pred c--cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHh
Q 014200 274 Q--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350 (429)
Q Consensus 274 ~--~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (429)
- ..|++|++++|.|..+ ++.+..+++|++|++++|.|+++++..|.+. +.++. +............
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-----~~Le~------LnLs~Nsi~~l~e 358 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-----SQLEE------LNLSHNSIDHLAE 358 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH-----HHhhh------hcccccchHHHHh
Confidence 2 3499999999999995 6678899999999999999999887765542 22211 1222233334445
Q ss_pred hhhccccccccccccCCccc----cCChhhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCccccccccc
Q 014200 351 MATRLSVTSKELSLEGMNLS----AIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESCISGCY 424 (429)
Q Consensus 351 ~~~~~~~~L~~l~l~~~~i~----~~~~~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~i~~~~ 424 (429)
..+...++|+.|||++|.++ .-...+..++.|+.|++.||++..+|. ++.+++.|+.|| |.+|.|..|-...
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld--L~~NaiaSIq~nA 435 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD--LGDNAIASIQPNA 435 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec--CCCCcceeecccc
Confidence 55667788999999999888 222344578999999999999998664 688999999999 9999988865443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.4e-36 Score=263.06 Aligned_cols=397 Identities=25% Similarity=0.319 Sum_probs=221.9
Q ss_pred HhhhcCeeeccCCCCccCChhhhhh--hccc--------cCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECC
Q 014200 7 AARTSGSLNLSNRSLRDVPNEVYKN--FDEA--------GEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVS 76 (429)
Q Consensus 7 ~~~~l~~L~l~~~~l~~~~~~~~~~--~~~~--------~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~ 76 (429)
....+++++..++++...|+.+.+- +..+ .-+++.+...+++.++++++.+..+++++..+..++.++-.
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 3444555556666655555544321 0000 11233333455555555555555555555555555555555
Q ss_pred CCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccc
Q 014200 77 HNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL 156 (429)
Q Consensus 77 ~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 156 (429)
+|.+..+|+++.++.+|..+++.+|.+..+|+..-+++.|++++...|-+..+|..++.+.+|..|++..|.+..+| .|
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef 224 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EF 224 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CC
Confidence 55555555555555555555555555555554444455555555555555555555555555555555555555555 45
Q ss_pred cccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEE
Q 014200 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236 (429)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 236 (429)
..|..|+++++..|.+..++......++++.++++++|+++++|+.+.-+++|..|++++|.++.+|..++++ +|+.|.
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 5555566666655555555555555556666666666666666665555566666666666666666656555 566555
Q ss_pred cCCCCCCcc--------------------------------------C----hhhcCCCCCCEEECCCCcCccccchhhc
Q 014200 237 MGNNALSAL--------------------------------------P----AELGKLSKLGTLDLHSNQLKEYCVEACQ 274 (429)
Q Consensus 237 l~~n~i~~~--------------------------------------~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 274 (429)
+.+|.+..+ + +.....-+.+.|++++-+++.+|.+.+.
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence 555442100 0 0011122344444444444444433332
Q ss_pred cc----cCEEEccCCCCCCC------------------------CccccCCCCCCEEEccCCCCCCccccccCCCcHHHH
Q 014200 275 LR----LSVLDLSNNSLSGL------------------------PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326 (429)
Q Consensus 275 ~~----L~~l~l~~n~l~~l------------------------~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~ 326 (429)
.- +..+++++|++..+ |..+..+++|..|++++|.+.++|...+.--. +
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~---L 460 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVR---L 460 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhh---h
Confidence 21 44445554444433 33455567788888888888777755322111 1
Q ss_pred HHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChh-hhccCCCcEEeCCCCccccCChhhcccccc
Q 014200 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPELSSCASL 405 (429)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L 405 (429)
+.+ .++.. .+.. .-........++.+-.+++++.++++. +..+.+|+.||+.+|++..+|..+++|.+|
T Consensus 461 q~L-------nlS~N--rFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL 530 (565)
T KOG0472|consen 461 QTL-------NLSFN--RFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNL 530 (565)
T ss_pred hee-------ccccc--cccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccce
Confidence 110 00000 0000 001111223456666677888877655 888999999999999999999999999999
Q ss_pred eeeccccCCCcccccc
Q 014200 406 QVKFSDLVTNKESCIS 421 (429)
Q Consensus 406 ~~L~~~l~~n~i~~i~ 421 (429)
++|+ +.+|+|. .|
T Consensus 531 ~hLe--L~gNpfr-~P 543 (565)
T KOG0472|consen 531 RHLE--LDGNPFR-QP 543 (565)
T ss_pred eEEE--ecCCccC-CC
Confidence 9999 9999998 44
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-34 Score=268.18 Aligned_cols=365 Identities=27% Similarity=0.384 Sum_probs=315.7
Q ss_pred hhhcCeeeccCCCCc--cCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch
Q 014200 8 ARTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85 (429)
Q Consensus 8 ~~~l~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 85 (429)
.+.++-.|+++|.+. .+|..+.. +..++.|.+...++..+|+.++.+.+|+.|.+++|.+..+-.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG 72 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG 72 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh
Confidence 456788999999875 56665544 677999999999999999999999999999999999998888
Q ss_pred hhhCCCCCcEeecCCCcCc--cCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCcc-ccccCCC
Q 014200 86 AIGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKM 162 (429)
Q Consensus 86 ~l~~l~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L 162 (429)
.++.+|.|+.+.+..|++. .+|+.+..+..|..|+++.|++...|..+....++-.|+++.|++.++|.. +-++..|
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 8999999999999999876 789999999999999999999999999999999999999999999999876 5678899
Q ss_pred cEEEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCc--cCCccccccCCCcEEEcCC
Q 014200 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGN 239 (429)
Q Consensus 163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~ 239 (429)
-.||++.|.+..+|+. ...+..|++|++++|.+... -..+..+++|+.|.++++.-+ .+|.++..+.+|..++++.
T Consensus 153 LfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 9999999999999886 78899999999999988543 233456678888999988654 7899999999999999999
Q ss_pred CCCCccChhhcCCCCCCEEECCCCcCccccchhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCcccccc
Q 014200 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318 (429)
Q Consensus 240 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 318 (429)
|.+..+|+.+..+++|+.|++++|.++.+......+. +++|+++.|+++.+|..+.+++.|+.|.+.+|+++-
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F------ 305 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF------ 305 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc------
Confidence 9999999999999999999999999998776665554 999999999999999999999999999999998752
Q ss_pred CCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChh
Q 014200 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398 (429)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~ 398 (429)
.| +|..+.-+ .+|+.+..++|.+.-+|+.+..|+.|+.|.|++|.+-.+|++
T Consensus 306 eG-iPSGIGKL---------------------------~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 306 EG-IPSGIGKL---------------------------IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred cC-Cccchhhh---------------------------hhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhh
Confidence 22 22222211 367888889999999999999999999999999999999999
Q ss_pred hcccccceeeccccCCCccccccc
Q 014200 399 LSSCASLQVKFSDLVTNKESCISG 422 (429)
Q Consensus 399 l~~l~~L~~L~~~l~~n~i~~i~~ 422 (429)
+.-++-|+.|| +..|+=--.|+
T Consensus 358 IHlL~~l~vLD--lreNpnLVMPP 379 (1255)
T KOG0444|consen 358 IHLLPDLKVLD--LRENPNLVMPP 379 (1255)
T ss_pred hhhcCCcceee--ccCCcCccCCC
Confidence 99999999999 99998554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-33 Score=261.13 Aligned_cols=343 Identities=24% Similarity=0.327 Sum_probs=309.4
Q ss_pred cCCccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEec
Q 014200 44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC 121 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l 121 (429)
++-++-+++++|.+. ..|.++..+.+++.|.+....+..+|+.++.+.+|++|.+.+|++.++...+..++.|+.+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 455788999999887 789899999999999999999999999999999999999999999988788889999999999
Q ss_pred CCCCCC--cCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC
Q 014200 122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199 (429)
Q Consensus 122 ~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 199 (429)
..|++. .+|..+.++..|..|+++.|++.+.|..+....++-.|++++|.+..+|...+.+++.|-.|++++|+++.+
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L 165 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML 165 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence 999887 789999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC--ccChhhcCCCCCCEEECCCCcCccccchhhccc
Q 014200 200 PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276 (429)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 276 (429)
|+....+..|+.|.+++|++.-. ..-+..+++|+.|.+++.+-+ .+|..+..+.+|..++++.|.+..+|.......
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR 245 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence 99999999999999999988622 233556888999999988655 789999999999999999999999988877655
Q ss_pred -cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200 277 -LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (429)
Q Consensus 277 -L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (429)
|++|++++|+|+.+....+.-.+|+.|+++.|.++.+|...+.-
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL----------------------------------- 290 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL----------------------------------- 290 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh-----------------------------------
Confidence 99999999999998766666678999999999998776543321
Q ss_pred ccccccccccCCccc--cCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccccc
Q 014200 356 SVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCY 424 (429)
Q Consensus 356 ~~~L~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~ 424 (429)
+.|+.|.+.+|+++ .+|++++.+.+|+.+..++|.+.-+|+.++.|++|+.|. |+.|.+-.+|+.+
T Consensus 291 -~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~--L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 291 -TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK--LDHNRLITLPEAI 358 (1255)
T ss_pred -HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc--ccccceeechhhh
Confidence 46789999999988 899999999999999999999999999999999999999 9999988888754
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.3e-30 Score=248.30 Aligned_cols=384 Identities=24% Similarity=0.283 Sum_probs=251.9
Q ss_pred cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCC
Q 014200 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL 90 (429)
Q Consensus 11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l 90 (429)
++.|++++|-+-+-|-...+. +.+|+.|+++.|.+...|..+..+.+|+.|+++.|.|..+|....++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 555566665555544322222 33466666666666666666666666666666666666666666666
Q ss_pred CCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCC-------------------ccc-
Q 014200 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-------------------CIT- 150 (429)
Q Consensus 91 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~-------------------~~~- 150 (429)
.+|+++++.+|.+..+|..+..+.+|++|+++.|.+..+|..+..++.+..+..++| .+.
T Consensus 91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG 170 (1081)
T ss_pred hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence 666666666666666666666666666666666666655555555544444444444 332
Q ss_pred cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccC
Q 014200 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (429)
Q Consensus 151 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (429)
.++.....+.. .+++++|.+... .+..+..++.+....|++..+. ...++++.|..+.|.++.... .....
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~-~p~p~ 241 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDV-HPVPL 241 (1081)
T ss_pred chhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeecc-ccccc
Confidence 22333333333 488888877622 2567778888888887775442 245778889999988874322 23456
Q ss_pred CCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCC
Q 014200 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309 (429)
Q Consensus 231 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~ 309 (429)
++++++++.+.++.+|+|+..+.+|+.++..+|.++.++...+... |+.+.+..|.+..+|+...+.++|+.|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 8999999999999999999999999999999999998887776655 999999999999999999999999999999999
Q ss_pred CCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCC
Q 014200 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLS 388 (429)
Q Consensus 310 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls 388 (429)
+..+|+..+.- ....+..+....... +..+...+ ...+.|..|++.+|.++ ..-..+..+++|+.|+|+
T Consensus 322 L~~lp~~~l~v-~~~~l~~ln~s~n~l--~~lp~~~e-------~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 322 LPSLPDNFLAV-LNASLNTLNVSSNKL--STLPSYEE-------NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred ccccchHHHhh-hhHHHHHHhhhhccc--cccccccc-------hhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 99988754432 233333333211111 11111111 12245677777777777 333355567777777777
Q ss_pred CCccccCChh-hcccccceeeccccCCCcccccccccccc
Q 014200 389 RNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGCYLYW 427 (429)
Q Consensus 389 ~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~~~~~~~ 427 (429)
+|++..+|.. +.++..|++|+ ||+|+++.+|+|+..|
T Consensus 392 yNrL~~fpas~~~kle~LeeL~--LSGNkL~~Lp~tva~~ 429 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELN--LSGNKLTTLPDTVANL 429 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHh--cccchhhhhhHHHHhh
Confidence 7777776653 55677777777 7777777777777666
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-27 Score=228.26 Aligned_cols=378 Identities=29% Similarity=0.330 Sum_probs=200.2
Q ss_pred HHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc
Q 014200 4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (429)
Q Consensus 4 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~ 83 (429)
+..++-+|+.||+++|++.++|..+-. ..+|+.|+++.|.+...|....++.+|+++.|.+|.+..+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~-------------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l 106 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITL-------------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL 106 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhh-------------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC
Confidence 445566799999999999999887755 4568888888888888887778888888888888888888
Q ss_pred chhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC-------------------CCC-cCCccccCCCCCCEEE
Q 014200 84 PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-------------------QLK-ELPSSLGRCLNLSDFK 143 (429)
Q Consensus 84 ~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~-------------------~l~-~~~~~~~~~~~L~~L~ 143 (429)
|..+..+.+|++|++++|.+..+|..+..+..+.++..++| .+. .++..+..+.. .++
T Consensus 107 P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ld 184 (1081)
T KOG0618|consen 107 PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLD 184 (1081)
T ss_pred chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eee
Confidence 88888888888888888877766654443333333333322 111 11111111111 244
Q ss_pred cCCCccccCCcccccc--------------------CCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200 144 ASNNCITSLPEDLADC--------------------SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203 (429)
Q Consensus 144 l~~~~~~~~~~~l~~~--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 203 (429)
+..|.+..+ .+..+ ++++.|+.+.|.++.... -..-.+++.++++.+++..+|.|+
T Consensus 185 Lr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi 260 (1081)
T KOG0618|consen 185 LRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWI 260 (1081)
T ss_pred cccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHH
Confidence 444433310 01111 223333333333221111 011123444555555555555444
Q ss_pred cCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccch------------
Q 014200 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE------------ 271 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------ 271 (429)
..+.+++.+....|.+..+|..+....+|+++.+..|.+..+|+......+|++|++..|.+..++..
T Consensus 261 ~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence 55555555555554444444444444444444444444444444444444444444444443332221
Q ss_pred -------------hhc--cccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCC
Q 014200 272 -------------ACQ--LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335 (429)
Q Consensus 272 -------------~~~--~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (429)
... ..|+.|++.+|.+++ .-+.+.+.++|+.|++++|.+.++|...+..- . .++.
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl-----e----~Lee 411 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL-----E----ELEE 411 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch-----H----HhHH
Confidence 111 126666777777766 34446667777777777777765553322210 0 0000
Q ss_pred CCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeeccccC
Q 014200 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLV 413 (429)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~ 413 (429)
..+++..... +......+..|+.|...+|.+..+| .+..++.|+.+|+|.|+++. +|+.... |.|++|| ++
T Consensus 412 L~LSGNkL~~---Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd--lS 484 (1081)
T KOG0618|consen 412 LNLSGNKLTT---LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD--LS 484 (1081)
T ss_pred Hhcccchhhh---hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee--cc
Confidence 0000000000 0011112245566666666666666 56667777777777777775 5554333 6777777 77
Q ss_pred CCc
Q 014200 414 TNK 416 (429)
Q Consensus 414 ~n~ 416 (429)
+|.
T Consensus 485 GN~ 487 (1081)
T KOG0618|consen 485 GNT 487 (1081)
T ss_pred CCc
Confidence 776
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.5e-23 Score=221.16 Aligned_cols=297 Identities=23% Similarity=0.272 Sum_probs=145.7
Q ss_pred CCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCC-CCcCCccccCCCCCCEEEcCCC-
Q 014200 70 LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNN- 147 (429)
Q Consensus 70 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~- 147 (429)
|+.|.+.++.+..+|..+ ...+|++|++.++.+..++..+..+++|++++++++. +..+| .+..+++|++|++++|
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC
Confidence 555555555555554444 3445555555555555555444555555555554432 33333 2444455555555544
Q ss_pred ccccCCccccccCCCcEEEccCC-cccccChhhhhcccccceeecCCccC-CcCCccccCCccCCeEeccCCcCccCCcc
Q 014200 148 CITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (429)
Q Consensus 148 ~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 225 (429)
.+..+|..+..+++|+.|++++| .+..++.. ..+++|+.|++++|.. ..+|. ...+|+.|+++++.+..+|..
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccccc
Confidence 23344545555555555555543 23333322 1344555555555432 22222 123455555555555554433
Q ss_pred ccccCCCcEEEcCCCCCCcc-------C-hhhcCCCCCCEEECCCCcC-ccccchhhc-cccCEEEccCC-CCCCCCccc
Q 014200 226 ISGCCSLAEFYMGNNALSAL-------P-AELGKLSKLGTLDLHSNQL-KEYCVEACQ-LRLSVLDLSNN-SLSGLPPEI 294 (429)
Q Consensus 226 ~~~~~~L~~L~l~~n~i~~~-------~-~~~~~~~~L~~L~l~~n~l-~~~~~~~~~-~~L~~l~l~~n-~l~~l~~~l 294 (429)
+ .+++|++|.+.++....+ + .....+++|+.|++++|.. ..++..... .+|+.|++++| .+..+|...
T Consensus 744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 3 344455554443221111 0 1112234555555555532 223332222 22555555554 344454443
Q ss_pred cCCCCCCEEEccCCCCC-CccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCC
Q 014200 295 GKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373 (429)
Q Consensus 295 ~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~ 373 (429)
.+++|+.|++++|..- .++ ..+.+|+.|++++|.++.+|
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p---------------------------------------~~~~nL~~L~Ls~n~i~~iP 862 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFP---------------------------------------DISTNISDLNLSRTGIEEVP 862 (1153)
T ss_pred -CccccCEEECCCCCcccccc---------------------------------------ccccccCEeECCCCCCccCh
Confidence 4566666666665321 111 01135667777777777777
Q ss_pred hhhhccCCCcEEeCCCC-ccccCChhhcccccceeeccccCCCc
Q 014200 374 SEIWEAGEITKLDLSRN-SIQELPPELSSCASLQVKFSDLVTNK 416 (429)
Q Consensus 374 ~~~~~~~~L~~L~ls~n-~i~~~~~~l~~l~~L~~L~~~l~~n~ 416 (429)
..+..+++|++|++++| ++..+|..+..+++|+.++ +++|.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~--l~~C~ 904 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD--FSDCG 904 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee--cCCCc
Confidence 77777777777777775 3555666666667777777 66664
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=1.7e-23 Score=207.66 Aligned_cols=263 Identities=29% Similarity=0.329 Sum_probs=185.3
Q ss_pred CCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCc
Q 014200 69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148 (429)
Q Consensus 69 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 148 (429)
.-..|+++++.++.+|..+. ++|+.|++.+|.++.+|.. .++|++|++++|+++.+|.. .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 45567777777777766553 3677777777777766642 46777777777777766642 3467777777777
Q ss_pred cccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccc
Q 014200 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228 (429)
Q Consensus 149 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 228 (429)
+..+|... .+|+.|++++|.+..++. ..++|+.|++++|.++.+|.. ...|+.|.+++|.++.+|..
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l--- 340 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL--- 340 (788)
T ss_pred hhhhhhch---hhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---cccccccccccCcccccccc---
Confidence 76665422 456677777777776653 235677777777777766542 24567777888877776642
Q ss_pred cCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCC
Q 014200 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308 (429)
Q Consensus 229 ~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~ 308 (429)
..+|+.|++++|.++.+|.. .++|+.|++++|.+..++.. +.+|+.|++++|.++.+|... ++|+.|++++|
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N 412 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLP---SELKELMVSGN 412 (788)
T ss_pred ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcc---cCCCEEEccCC
Confidence 24788888888888877653 34677788888888876643 345888888888888877533 57888899998
Q ss_pred CCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCC
Q 014200 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388 (429)
Q Consensus 309 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls 388 (429)
.++.+|.. +.+|+.|++++|+|+.+|..+..+++|+.|+|+
T Consensus 413 ~LssIP~l---------------------------------------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 413 RLTSLPML---------------------------------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cCCCCCcc---------------------------------------hhhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence 88766521 124577889999999999888889999999999
Q ss_pred CCcccc-CChhh
Q 014200 389 RNSIQE-LPPEL 399 (429)
Q Consensus 389 ~n~i~~-~~~~l 399 (429)
+|.+++ .+..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 999887 66655
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=1.6e-23 Score=207.88 Aligned_cols=259 Identities=27% Similarity=0.315 Sum_probs=216.1
Q ss_pred CCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCC
Q 014200 91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170 (429)
Q Consensus 91 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 170 (429)
..-..|+++++.++.+|+.+. ++|+.|++.+|+++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 456789999999999998765 4899999999999998863 57899999999999988753 468999999999
Q ss_pred cccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhc
Q 014200 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250 (429)
Q Consensus 171 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 250 (429)
.+..++. ....|+.|++++|.++.+|.. +++|+.|++++|.+..+|.. ...|+.|++++|.++.+|..
T Consensus 273 ~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l-- 340 (788)
T PRK15387 273 PLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL-- 340 (788)
T ss_pred chhhhhh----chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccccccc--
Confidence 8887654 235788999999999888753 47899999999999988753 34688899999999988752
Q ss_pred CCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHH
Q 014200 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330 (429)
Q Consensus 251 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~ 330 (429)
.++|+.|++++|.++.++.. +.+++.|++++|.++.+|.. ..+|+.|++++|.++.+|..
T Consensus 341 -p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l-------------- 400 (788)
T PRK15387 341 -PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL-------------- 400 (788)
T ss_pred -ccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--------------
Confidence 25899999999999988753 45699999999999988764 35799999999998765521
Q ss_pred hcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeecc
Q 014200 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFS 410 (429)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~ 410 (429)
+++|+.|++++|.++.+|.. ..+|+.|++++|+|+.+|+.+.++++|+.|+
T Consensus 401 -------------------------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld- 451 (788)
T PRK15387 401 -------------------------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN- 451 (788)
T ss_pred -------------------------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEE-
Confidence 13679999999999999864 3578999999999999999999999999999
Q ss_pred ccCCCcccc
Q 014200 411 DLVTNKESC 419 (429)
Q Consensus 411 ~l~~n~i~~ 419 (429)
+++|++++
T Consensus 452 -Ls~N~Ls~ 459 (788)
T PRK15387 452 -LEGNPLSE 459 (788)
T ss_pred -CCCCCCCc
Confidence 99999997
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-26 Score=201.84 Aligned_cols=261 Identities=24% Similarity=0.315 Sum_probs=190.6
Q ss_pred eeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhhCC
Q 014200 13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGEL 90 (429)
Q Consensus 13 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~l 90 (429)
..|+++-+++.||..+++. .+.++|..|+|+.||+ +|+.+++|++||+++|.|..+ |.+|+++
T Consensus 50 ~VdCr~~GL~eVP~~LP~~---------------tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL 114 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPE---------------TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL 114 (498)
T ss_pred eEEccCCCcccCcccCCCc---------------ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh
Confidence 5678888899999988664 6788999999999987 699999999999999999977 6699999
Q ss_pred CCCcEeecCC-CcCccCCcc-ccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEE
Q 014200 91 HMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLD 166 (429)
Q Consensus 91 ~~L~~L~l~~-~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~ 166 (429)
++|..|.+.+ |+|+.+|.. |+++..++-|.+.-+++..+. +.+..++++..|.+.+|.+..++. .|..+..++.+.
T Consensus 115 ~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 115 ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 9998888766 799988765 788888888888888887664 467888888889999988887766 577777788877
Q ss_pred ccCCccc------cc------ChhhhhcccccceeecCC-------------------------ccCC-cCC-ccccCCc
Q 014200 167 VEGNKLT------VL------SNNLIASWTMLTELIASK-------------------------NLLN-GMP-ETIGSLS 207 (429)
Q Consensus 167 l~~~~~~------~~------~~~~~~~~~~L~~L~l~~-------------------------~~l~-~~~-~~~~~~~ 207 (429)
+..|.+. .. .+..++++....-..+.+ +... ..| ..+..++
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence 7766522 00 001111211111111111 1111 112 2467788
Q ss_pred cCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhccc--cCEEEcc
Q 014200 208 RLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLS 283 (429)
Q Consensus 208 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~l~l~ 283 (429)
+|+.|++++|+++.+ +.+|.+...+++|.+..|.+..+ ...|..+..|++|++.+|+|+.+.+.++..- |.++++-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 888888888888866 56788888888888888888766 3457888888888888888887777766643 8888887
Q ss_pred CCCCC
Q 014200 284 NNSLS 288 (429)
Q Consensus 284 ~n~l~ 288 (429)
.|.+.
T Consensus 355 ~Np~~ 359 (498)
T KOG4237|consen 355 SNPFN 359 (498)
T ss_pred cCccc
Confidence 66543
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.6e-20 Score=199.97 Aligned_cols=331 Identities=21% Similarity=0.267 Sum_probs=244.1
Q ss_pred hHHHHHhhhcCeeeccCCCCc-------cCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEE
Q 014200 2 DRILKAARTSGSLNLSNRSLR-------DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLN 74 (429)
Q Consensus 2 ~~~~~~~~~l~~L~l~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~ 74 (429)
..+|+++++|+.|.+..+... .+|.....- ..+|+.|.+.++.++.+|..| ...+|+.|+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l------------p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~ 617 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL------------PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQ 617 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhc------------CcccEEEEecCCCCCCCCCcC-CccCCcEEE
Confidence 368999999999999765432 233322111 235899999999889998877 468999999
Q ss_pred CCCCCCCCcchhhhCCCCCcEeecCCC-cCccCCccccCCCCcCEEecCCCC-CCcCCccccCCCCCCEEEcCCC-cccc
Q 014200 75 VSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNN-CITS 151 (429)
Q Consensus 75 l~~~~i~~~~~~l~~l~~L~~L~l~~~-~i~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~-~~~~ 151 (429)
+.++.+..++..+..+++|++|+++++ .+..+|. +..+++|++|++.+|. +..+|..+..+++|+.|++++| .+..
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 999999888888888999999999877 4666764 7778999999998864 5678888889999999999986 5667
Q ss_pred CCccccccCCCcEEEccCCcc-cccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC--------
Q 014200 152 LPEDLADCSKMSKLDVEGNKL-TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-------- 222 (429)
Q Consensus 152 ~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-------- 222 (429)
+|..+ .+++|+.|++++|.. ..++. ...+|++|+++++.++.+|..+ .+++|+.|.+.++....+
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccc
Confidence 77655 678999999988743 23322 2357888999999888887654 577888888876443221
Q ss_pred CccccccCCCcEEEcCCCC-CCccChhhcCCCCCCEEECCCC-cCccccchhhccccCEEEccCCC-CCCCCccccCCCC
Q 014200 223 PSSISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLDLSNNS-LSGLPPEIGKMTT 299 (429)
Q Consensus 223 ~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~L~~l~l~~n~-l~~l~~~l~~~~~ 299 (429)
+.....+++|+.|++++|. +..+|..++.+++|+.|++++| .+..++......+|+.|++++|. +..+|.. .++
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~n 847 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STN 847 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccc
Confidence 1123345788899998884 5578888888999999999886 46666665555568999998874 3445442 357
Q ss_pred CCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCC-ccccCChhhhc
Q 014200 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM-NLSAIPSEIWE 378 (429)
Q Consensus 300 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~i~~~~~~~~~ 378 (429)
|+.|++++|.++++|... ...++|+.|++++| ++..+|..+..
T Consensus 848 L~~L~Ls~n~i~~iP~si------------------------------------~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWI------------------------------------EKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred cCEeECCCCCCccChHHH------------------------------------hcCCCCCEEECCCCCCcCccCccccc
Confidence 888999998887655321 11247788888885 56678877778
Q ss_pred cCCCcEEeCCCCc
Q 014200 379 AGEITKLDLSRNS 391 (429)
Q Consensus 379 ~~~L~~L~ls~n~ 391 (429)
++.|+.+++++|.
T Consensus 892 L~~L~~L~l~~C~ 904 (1153)
T PLN03210 892 LKHLETVDFSDCG 904 (1153)
T ss_pred ccCCCeeecCCCc
Confidence 8888888888884
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=7.7e-21 Score=189.95 Aligned_cols=246 Identities=25% Similarity=0.378 Sum_probs=191.9
Q ss_pred CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCC
Q 014200 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~ 125 (429)
+.+.|++++++++.+|..+. ++++.|++++|.++.+|..+. ++|++|++++|.+..+|..+. ++|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 46778888888887776553 478888888888888876543 578888888888888776543 468888888888
Q ss_pred CCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccC
Q 014200 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205 (429)
Q Consensus 126 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 205 (429)
+..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.++.++.. + .+.|+.|++++|.++.+|..+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~l-- 323 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPETL-- 323 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCccc--
Confidence 888776553 478888888888887776553 4788889988888876643 1 246888889999888777544
Q ss_pred CccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCC
Q 014200 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285 (429)
Q Consensus 206 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n 285 (429)
.++|+.|++++|.++.+|..+ +++|+.|++++|.++.+|..+. ++|+.|++++|.++.++... +..|+.|++++|
T Consensus 324 ~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N 398 (754)
T PRK15370 324 PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL-PAALQIMQASRN 398 (754)
T ss_pred cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccC
Confidence 368999999999998887655 3789999999999998887653 68999999999999887653 346999999999
Q ss_pred CCCCCCcccc----CCCCCCEEEccCCCCC
Q 014200 286 SLSGLPPEIG----KMTTLRKLLLTGNPLR 311 (429)
Q Consensus 286 ~l~~l~~~l~----~~~~L~~L~l~~~~i~ 311 (429)
+++.+|..+. .++.+..+++.+|++.
T Consensus 399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 399 NLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 9998876543 3578899999999985
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.3e-20 Score=188.22 Aligned_cols=247 Identities=26% Similarity=0.401 Sum_probs=205.3
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~ 88 (429)
++.+.|++++++++++|..+. ++++.|++++|.++.+|..+. ++|+.|++++|.++.+|..+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP 240 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh
Confidence 456789999999999998664 358999999999999987654 589999999999998887653
Q ss_pred CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEcc
Q 014200 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~ 168 (429)
++|+.|++++|.+..+|..+. .+|++|++++|++..+|..+. ++|+.|++++|.++.+|..+. ++|+.|+++
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQ 312 (754)
T ss_pred --ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhc
Confidence 479999999999999988764 589999999999998887653 589999999999998876553 478999999
Q ss_pred CCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChh
Q 014200 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248 (429)
Q Consensus 169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 248 (429)
+|.+..++.. ..++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|..+ .++|+.|++++|.++.+|+.
T Consensus 313 ~N~Lt~LP~~---l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 313 SNSLTALPET---LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPEN 385 (754)
T ss_pred CCccccCCcc---ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHh
Confidence 9999877653 23689999999999988887553 78999999999999887655 46899999999999999877
Q ss_pred hcCCCCCCEEECCCCcCccccchhhc-----cccCEEEccCCCCCC
Q 014200 249 LGKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSG 289 (429)
Q Consensus 249 ~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~L~~l~l~~n~l~~ 289 (429)
+. ..|+.|++++|.+..++..... +.+..+++.+|.++.
T Consensus 386 l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 386 LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 65 3799999999999877653221 347899999998863
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-21 Score=172.65 Aligned_cols=288 Identities=23% Similarity=0.321 Sum_probs=164.6
Q ss_pred CCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCC-CCCCcCCccccCCCCCCEEEcCC
Q 014200 70 LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS-NQLKELPSSLGRCLNLSDFKASN 146 (429)
Q Consensus 70 L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~L~~L~l~~ 146 (429)
-+.++|..|.|+.+|+ +|+.+++|+.|++++|.|+.| |++|.+++++..+-+.+ |+|+.+|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k--------------- 133 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK--------------- 133 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh---------------
Confidence 3444555555555543 455555555555555555444 33344444443333322 44444432
Q ss_pred CccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-cccCCccCCeEeccCCcCccCCcc
Q 014200 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSS 225 (429)
Q Consensus 147 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 225 (429)
..|..+..++.|.+.-|.+..+....+..++.+..|.+.+|.+..++. .+..+..++.+.+..|++...
T Consensus 134 -------~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd--- 203 (498)
T KOG4237|consen 134 -------GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD--- 203 (498)
T ss_pred -------hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---
Confidence 124445555555555555555555555566666666666665555543 455555566665555542211
Q ss_pred ccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEE---EccCCCCCC-CC-ccccCCCCC
Q 014200 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL---DLSNNSLSG-LP-PEIGKMTTL 300 (429)
Q Consensus 226 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l---~l~~n~l~~-l~-~~l~~~~~L 300 (429)
.+.+.+..... ..+..++.........+.+.++..+....+...++.+ ..+.+...+ .| ..|+++++|
T Consensus 204 -CnL~wla~~~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 204 -CNLPWLADDLA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred -cccchhhhHHh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence 00111000000 0011111111122222233333333222222221111 112222333 23 248999999
Q ss_pred CEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhh-cc
Q 014200 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EA 379 (429)
Q Consensus 301 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~-~~ 379 (429)
+.+++++|.++.+.+.+|.|.. .+++|.+..|+|..+-+.++ ++
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a-----------------------------------~l~eL~L~~N~l~~v~~~~f~~l 321 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAA-----------------------------------ELQELYLTRNKLEFVSSGMFQGL 321 (498)
T ss_pred eEeccCCCccchhhhhhhcchh-----------------------------------hhhhhhcCcchHHHHHHHhhhcc
Confidence 9999999999999999988864 67899999999998877766 78
Q ss_pred CCCcEEeCCCCcccc-CChhhcccccceeeccccCCCccccccccccccc
Q 014200 380 GEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYLYWN 428 (429)
Q Consensus 380 ~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~ 428 (429)
.+|+.|+|.+|+|+. -|-+|..+.+|.+|+ +-.|++-| +|.+.|+
T Consensus 322 s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~--l~~Np~~C--nC~l~wl 367 (498)
T KOG4237|consen 322 SGLKTLSLYDNQITTVAPGAFQTLFSLSTLN--LLSNPFNC--NCRLAWL 367 (498)
T ss_pred ccceeeeecCCeeEEEecccccccceeeeee--hccCcccC--ccchHHH
Confidence 999999999999998 778888999999999 99999999 8999885
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=7.8e-20 Score=143.53 Aligned_cols=162 Identities=29% Similarity=0.450 Sum_probs=121.6
Q ss_pred ccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEe
Q 014200 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (429)
Q Consensus 41 ~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~ 120 (429)
++++.+++.|.++.|+++.+|..++.+.+|+.|++++|+++.+|..++.+++|+.|++.-|++..+|..|+.++.|+.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44567788888888888888877888888888888888888888888888888888888777777788888888888888
Q ss_pred cCCCCCC--cCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc
Q 014200 121 CSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198 (429)
Q Consensus 121 l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 198 (429)
+.+|.+. .+|..++.++.|+.|++++|.+..+|..++++++|+.|.+.+|++-.++.. ++.++.|++|.+.+|+++.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeee
Confidence 8877776 567777777777777777777777777777777777777777776666554 6666666666666666666
Q ss_pred CCccc
Q 014200 199 MPETI 203 (429)
Q Consensus 199 ~~~~~ 203 (429)
+|..+
T Consensus 188 lppel 192 (264)
T KOG0617|consen 188 LPPEL 192 (264)
T ss_pred cChhh
Confidence 65444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=4.7e-18 Score=157.71 Aligned_cols=109 Identities=25% Similarity=0.308 Sum_probs=70.0
Q ss_pred cCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhh
Q 014200 277 LSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351 (429)
Q Consensus 277 L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (429)
|++|++++|.+++ +...+..+++|+.|++++|.+++.. . ... ...
T Consensus 195 L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~--------~---~~l-------------------~~~ 244 (319)
T cd00116 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG--------A---AAL-------------------ASA 244 (319)
T ss_pred CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH--------H---HHH-------------------HHH
Confidence 5555555554443 2344667788888888888774311 0 000 000
Q ss_pred hhccccccccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc-----CChhhccc-ccceeeccccCCCcc
Q 014200 352 ATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSC-ASLQVKFSDLVTNKE 417 (429)
Q Consensus 352 ~~~~~~~L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~-----~~~~l~~l-~~L~~L~~~l~~n~i 417 (429)
.....+.|++|++++|.++ .+...+..+++|+++++++|.+++ +..++... +.|+++| +.+|+|
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 319 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW--VKDDSF 319 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc--cCCCCC
Confidence 0112357888999998886 345566677899999999999984 44444444 6899999 999875
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=5.3e-19 Score=138.86 Aligned_cols=159 Identities=31% Similarity=0.462 Sum_probs=94.9
Q ss_pred cCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEc
Q 014200 65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 144 (429)
Q Consensus 65 ~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 144 (429)
-.+.+++.|.+++|.++.+|..++.+.+|+.|++.+|++..+|..+..+++|+.|+++-|++..+|..++.++.|+.|++
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 34556667777777777777767777777777777777777777666667777776666666666666666666666666
Q ss_pred CCCccc--cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC
Q 014200 145 SNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222 (429)
Q Consensus 145 ~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 222 (429)
..|.+. .+|..|..+..|+.|++++|++..+++. ++.+++|+.|.+.+|.+-.+|..++.+.+|++|++++|+++.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 655554 3455555555555555555555544443 4555555555555555545555555555555555555554444
Q ss_pred Cc
Q 014200 223 PS 224 (429)
Q Consensus 223 ~~ 224 (429)
|.
T Consensus 189 pp 190 (264)
T KOG0617|consen 189 PP 190 (264)
T ss_pred Ch
Confidence 43
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=3.8e-16 Score=144.86 Aligned_cols=243 Identities=24% Similarity=0.231 Sum_probs=153.4
Q ss_pred cCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCCC-------cchhhhCCCCCcEeecCCCcCcc-CCccc
Q 014200 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIMK-IPDEI 110 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~-------~~~~l~~l~~L~~L~l~~~~i~~-l~~~~ 110 (429)
..+|+.++++++.++ .++..+...+++++++++++.+.. ++..+..+++|++|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 344777777777663 344455666677777777766542 23355667777777777776652 22333
Q ss_pred cCC---CCcCEEecCCCCCC-----cCCccccCC-CCCCEEEcCCCccc-----cCCccccccCCCcEEEccCCcccccC
Q 014200 111 GSA---TALVKFDCSSNQLK-----ELPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS 176 (429)
Q Consensus 111 ~~~---~~L~~L~l~~~~l~-----~~~~~~~~~-~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~ 176 (429)
..+ ++|++|++++|++. .+...+..+ ++|+.+++++|.++ .++..+..+++|++|++++|.+....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 222 34777777777665 122334455 67788888777766 23344556677888888877766322
Q ss_pred hh----hhhcccccceeecCCccCCc-----CCccccCCccCCeEeccCCcCccC-Cccc-----cccCCCcEEEcCCCC
Q 014200 177 NN----LIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI-PSSI-----SGCCSLAEFYMGNNA 241 (429)
Q Consensus 177 ~~----~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-----~~~~~L~~L~l~~n~ 241 (429)
.. .+...+.|+.+++++|.++. +...+..+++|+.|++++|.++.. ...+ ...+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 11 13344578888888877642 234456678899999999887732 1111 124789999999998
Q ss_pred CC-----ccChhhcCCCCCCEEECCCCcCccccch-----h-hc-cccCEEEccCCC
Q 014200 242 LS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE-----A-CQ-LRLSVLDLSNNS 286 (429)
Q Consensus 242 i~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~-~~-~~L~~l~l~~n~ 286 (429)
++ .+...+..+++|+.+++++|.++..... . .. ..++++++.+|.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 86 2345566778999999999988843221 1 11 348888887765
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=7.4e-15 Score=136.01 Aligned_cols=191 Identities=29% Similarity=0.413 Sum_probs=154.4
Q ss_pred CCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCc
Q 014200 139 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218 (429)
Q Consensus 139 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 218 (429)
-...+++.|++.++|..+..+..|+.+.+..|.+..++.. +..+..|..++++.|++..+|..+..++ |+.+-+++|+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 3445667777777777766666777777766666665544 6677777777777777777777666666 7888899999
Q ss_pred CccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCC
Q 014200 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMT 298 (429)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~ 298 (429)
++.+|..++...+|..++.+.|.+..+|..++.+.+|+.|.+..|.+..++.+.....|.+||+++|++..+|..|.+|+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~ 234 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMR 234 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhh
Confidence 99888888888899999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred CCCEEEccCCCCCCccccccCCCcHHHHHHHHh
Q 014200 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331 (429)
Q Consensus 299 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~ 331 (429)
.|++|-+.+|++..-|.+++.......++|+.-
T Consensus 235 ~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 235 HLQVLQLENNPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred hheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence 999999999999888877776666666655543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.39 E-value=1.6e-14 Score=133.90 Aligned_cols=207 Identities=29% Similarity=0.373 Sum_probs=138.5
Q ss_pred hHHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCC
Q 014200 2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS 81 (429)
Q Consensus 2 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~ 81 (429)
+.++.....--.|.|++..+..+|-..+.. ++......+++.|++..+|..+..|..|+.+.++.|.+.
T Consensus 43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~-----------~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r 111 (722)
T KOG0532|consen 43 ERALEEAEYSGRLLLSGRRLKEFPRGAASY-----------DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR 111 (722)
T ss_pred hHHHHHHhhhcccccccchhhcCCCccccc-----------cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence 345555555566677777766666555441 345556677777777777777777777777777777777
Q ss_pred CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCC
Q 014200 82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161 (429)
Q Consensus 82 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 161 (429)
.+|+++..+..|++++++.|++..+|..+..+ -|+.+-+++|+++.+|..++....|..++.+.|++..+|..++.+.+
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 77777777777777777777777777665544 35666667777777776666666677777777777666666666666
Q ss_pred CcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC
Q 014200 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222 (429)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~ 222 (429)
|+.+.+..|.+..++.. +. .-.|..|+++.|++..+|..+..++.|+.|-+.+|++..-
T Consensus 191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 77666666666666654 22 3346666677776666666666677777777776666543
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.36 E-value=2.2e-13 Score=116.96 Aligned_cols=133 Identities=32% Similarity=0.390 Sum_probs=116.2
Q ss_pred hcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEEC
Q 014200 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 260 (429)
Q Consensus 181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l 260 (429)
..|..|+++++++|.++.+.+++.-.|+++.|+++.|.+..+.. ++.+++|+.|++++|.++++-.|-..+.++++|.+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34667899999999999888888889999999999999987755 88899999999999999988777788889999999
Q ss_pred CCCcCccccchhhccccCEEEccCCCCCCCCc--cccCCCCCCEEEccCCCCCCcc
Q 014200 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR 314 (429)
Q Consensus 261 ~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~--~l~~~~~L~~L~l~~~~i~~~~ 314 (429)
+.|.+.++....-..+|..||+++|+|..+.. .++++|+|+.+.+.+|++..++
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999887766666679999999999988644 5899999999999999997654
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=3.8e-13 Score=115.48 Aligned_cols=132 Identities=22% Similarity=0.218 Sum_probs=92.3
Q ss_pred CCCCCCEEECCCCcCccccchhhc-cccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHH
Q 014200 251 KLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329 (429)
Q Consensus 251 ~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~ 329 (429)
.++-|+++++++|.|+.+....-. +.++.|+++.|.+..+.. +..+++|+.|++++|.++++.+....
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K---------- 350 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK---------- 350 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhh----------
Confidence 344577777777777766544322 347777777777766543 66777777777777777654322110
Q ss_pred HhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc--CChhhccccccee
Q 014200 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQV 407 (429)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~ 407 (429)
..++|.|.+++|.|..+. ++..+-+|..||+++|+|.. --..++++|-|+.
T Consensus 351 --------------------------LGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 351 --------------------------LGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET 403 (490)
T ss_pred --------------------------hcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence 136678888888776553 67778889999999999886 3356889999999
Q ss_pred eccccCCCccccccc
Q 014200 408 KFSDLVTNKESCISG 422 (429)
Q Consensus 408 L~~~l~~n~i~~i~~ 422 (429)
+. +.+|++..+|+
T Consensus 404 l~--L~~NPl~~~vd 416 (490)
T KOG1259|consen 404 LR--LTGNPLAGSVD 416 (490)
T ss_pred Hh--hcCCCccccch
Confidence 99 99999988775
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-13 Score=120.67 Aligned_cols=225 Identities=22% Similarity=0.242 Sum_probs=119.9
Q ss_pred cCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCC----Ccc-------hhhhCCCCCcEeecCCCcCc--c
Q 014200 44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM--K 105 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~----~~~-------~~l~~l~~L~~L~l~~~~i~--~ 105 (429)
...++.+++++|.+. .+...+++.+.|+..++++-..+ .+| +++.++|+|+++++|+|.+. .
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 345667777776655 23444666667777777655322 222 34456677777777777665 1
Q ss_pred C---CccccCCCCcCEEecCCCCCCcCC--------------ccccCCCCCCEEEcCCCccccC-----CccccccCCCc
Q 014200 106 I---PDEIGSATALVKFDCSSNQLKELP--------------SSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMS 163 (429)
Q Consensus 106 l---~~~~~~~~~L~~L~l~~~~l~~~~--------------~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~~~~L~ 163 (429)
+ .+.+..+..|++|.+.+|.+.... .....-++|+++.+.+|++... ...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 1 123456677777777777665221 1223344566666666655522 23344455566
Q ss_pred EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCc-----cCCccccccCCCcEEEcC
Q 014200 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMG 238 (429)
Q Consensus 164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~ 238 (429)
.+.++.|.+..-+.. .+...+..+++|+.|++..|.++ .+..++..+++|++++++
T Consensus 189 evr~~qN~I~~eG~~-------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVT-------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred eEEEecccccCchhH-------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 666655544422110 01223444555555555555544 223445556666666666
Q ss_pred CCCCC-----ccChhh-cCCCCCCEEECCCCcCccc-----cch-hhccccCEEEccCCCC
Q 014200 239 NNALS-----ALPAEL-GKLSKLGTLDLHSNQLKEY-----CVE-ACQLRLSVLDLSNNSL 287 (429)
Q Consensus 239 ~n~i~-----~~~~~~-~~~~~L~~L~l~~n~l~~~-----~~~-~~~~~L~~l~l~~n~l 287 (429)
+|.+. .+..++ ...|+|+.+.+.+|.++.- ... .-.+.|+.|++++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 66555 122222 3467777777777776621 111 1123377777777777
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=4.5e-12 Score=121.10 Aligned_cols=194 Identities=30% Similarity=0.451 Sum_probs=93.2
Q ss_pred eecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCC-CCCEEEcCCCccccCCccccccCCCcEEEccCCcccc
Q 014200 96 LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174 (429)
Q Consensus 96 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 174 (429)
++...+.+......+...+.++.+++.++.+..++....... +|+.|++++|.+..++..+..+++|+.|++++|++..
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh
Confidence 444444442222223333455555555555555554444442 5555555555555554444555555555555555554
Q ss_pred cChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCC
Q 014200 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK 254 (429)
Q Consensus 175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 254 (429)
++.. ....+.++.+++++|.+..+| ........|+++.+++|.+...+..+..+.+
T Consensus 178 l~~~-~~~~~~L~~L~ls~N~i~~l~-----------------------~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~ 233 (394)
T COG4886 178 LPKL-LSNLSNLNNLDLSGNKISDLP-----------------------PEIELLSALEELDLSNNSIIELLSSLSNLKN 233 (394)
T ss_pred hhhh-hhhhhhhhheeccCCccccCc-----------------------hhhhhhhhhhhhhhcCCcceecchhhhhccc
Confidence 4432 224444444555555444444 4333334445555554444444444444455
Q ss_pred CCEEECCCCcCccccch-hhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCcc
Q 014200 255 LGTLDLHSNQLKEYCVE-ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314 (429)
Q Consensus 255 L~~L~l~~n~l~~~~~~-~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~ 314 (429)
+..+.+.+|++..++.. ....+++.+++++|.++.++. +....+++.++++++.+..++
T Consensus 234 l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 234 LSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 55555555544432211 122225555555555555544 555556666666666555443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.33 E-value=2.8e-12 Score=122.44 Aligned_cols=195 Identities=33% Similarity=0.479 Sum_probs=142.6
Q ss_pred EEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCC-CcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccc
Q 014200 72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150 (429)
Q Consensus 72 ~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 150 (429)
.++...+.+..-...+..++.++.|++.++.+..++....... +|+.++++.|++..++..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5677666664333445566777888888877777777666664 788888888887777667777788888888888887
Q ss_pred cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccC
Q 014200 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230 (429)
Q Consensus 151 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 230 (429)
.++......+.|+.+++++|.+..++.. ......|+++.+++|.....+..+..+.++..+.+.++.+..++..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence 7776665777888888888888777653 234455778888887665556667777777777777777777666777777
Q ss_pred CCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccc
Q 014200 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268 (429)
Q Consensus 231 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 268 (429)
.++.|++++|.++.++. ++...+++.++++++.+...
T Consensus 256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 78888888888887766 77778888888888776643
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.1e-13 Score=120.30 Aligned_cols=203 Identities=21% Similarity=0.216 Sum_probs=140.0
Q ss_pred ccCCCCCCEEECCCCCCCCcc--hhhhCCCCCcEeecCCCcCc---cCCccccCCCCcCEEecCCCCCCcCCc--cccCC
Q 014200 64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIM---KIPDEIGSATALVKFDCSSNQLKELPS--SLGRC 136 (429)
Q Consensus 64 ~~~~~~L~~L~l~~~~i~~~~--~~l~~l~~L~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~ 136 (429)
=+++++|+.+.++++.+...+ +....|++++.|+++.|-+. .+......+|+|+.|+++.|++....+ .-..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 356788899999888877665 36788999999999988655 334445678999999999988874432 22355
Q ss_pred CCCCEEEcCCCccc--cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC--ccccCCccCCeE
Q 014200 137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL 212 (429)
Q Consensus 137 ~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L 212 (429)
+.|+.|.++.|.++ .+...+..+|+++.|+++.|....+.......+..|++|++++|.+-..+ .....++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 67888888888887 33344566788888888888522222222345567888888888876555 345677888888
Q ss_pred eccCCcCccC--Ccc-----ccccCCCcEEEcCCCCCCccC--hhhcCCCCCCEEECCCCcCc
Q 014200 213 DLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 213 ~l~~~~~~~~--~~~-----~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~ 266 (429)
+++.+.+..+ |+. ....++|++|++..|.+.+++ ..+..+++|+.+.+..|.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888877743 332 355677778887777776543 23555667777776666655
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=2e-13 Score=119.59 Aligned_cols=238 Identities=25% Similarity=0.331 Sum_probs=158.5
Q ss_pred hccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCc----cCCcc-------ccCCCCcCEEecCCCCC
Q 014200 63 DLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM----KIPDE-------IGSATALVKFDCSSNQL 126 (429)
Q Consensus 63 ~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~----~l~~~-------~~~~~~L~~L~l~~~~l 126 (429)
.......++.+++++|.++ .+...+++.++|+..++++--.. .+|+. +-++++|++++|+.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3566788999999999887 23456777888888888763111 34433 34566777777777765
Q ss_pred C-----cCCccccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC-
Q 014200 127 K-----ELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM- 199 (429)
Q Consensus 127 ~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~- 199 (429)
. .+..-+.+++.|++|++.+|.+...... ++ ..|..+.. + .....-+.|+++...+|++..-
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~~--~-------kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELAV--N-------KKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHHH--H-------hccCCCcceEEEEeecccccccc
Confidence 5 1122344566666666666655522110 00 01111110 0 0022345678888888877543
Q ss_pred ----CccccCCccCCeEeccCCcCc-----cCCccccccCCCcEEEcCCCCCC-----ccChhhcCCCCCCEEECCCCcC
Q 014200 200 ----PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQL 265 (429)
Q Consensus 200 ----~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L~l~~n~l 265 (429)
...++..+.|+.+.+..|.+. .+..++..|++|+.|++.+|.++ .+..++..+++|+.+++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 345677788999999999876 22356889999999999999888 3456788999999999999988
Q ss_pred ccccch-------hhccccCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCC
Q 014200 266 KEYCVE-------ACQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLR 311 (429)
Q Consensus 266 ~~~~~~-------~~~~~L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~ 311 (429)
..-... -..++|+.+.+.+|.++. +..++...+.|+.|++++|.+.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 732211 113469999999999986 3345666889999999999983
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1e-12 Score=118.37 Aligned_cols=102 Identities=20% Similarity=0.186 Sum_probs=42.6
Q ss_pred ccCCeEeccCCcCccCC--ccccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccch---hhccccC
Q 014200 207 SRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVE---ACQLRLS 278 (429)
Q Consensus 207 ~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~L~ 278 (429)
.+|+.+.+.++.....+ .....|++++.|+++.|-+..+ ......+|+|+.|+++.|.+...... .....++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 34444444444443332 1333444455555554444422 22234445555555555444321111 0111245
Q ss_pred EEEccCCCCCC--CCccccCCCCCCEEEccCC
Q 014200 279 VLDLSNNSLSG--LPPEIGKMTTLRKLLLTGN 308 (429)
Q Consensus 279 ~l~l~~n~l~~--l~~~l~~~~~L~~L~l~~~ 308 (429)
.|.++.|.++. +...+..+|+|+.|++.+|
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 55555554443 3333444555555555554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=8.7e-12 Score=102.49 Aligned_cols=122 Identities=26% Similarity=0.354 Sum_probs=37.0
Q ss_pred cCCccEEEcCCCCCCccchhcc-CCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccc-cCCCCcCEEec
Q 014200 44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC 121 (429)
Q Consensus 44 ~~~L~~L~l~~~~i~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~-~~~~~L~~L~l 121 (429)
+.+++.|++.++.|+.+. .+. .+.+|+.|++++|.++.++ .+..+++|++|++++|.++.+++.+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 445677777777776664 333 4566777777777776663 4556677777777777776665443 34667777777
Q ss_pred CCCCCCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEc
Q 014200 122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDV 167 (429)
Q Consensus 122 ~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l 167 (429)
++|++..+. ..+..+++|+.|++.+|++...+. .+..+|+|+.||-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 776665432 234455566666666665553321 1344455555543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2.9e-11 Score=99.45 Aligned_cols=124 Identities=25% Similarity=0.267 Sum_probs=43.1
Q ss_pred cCCCCCCEEECCCCcCccccchh-hccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHH
Q 014200 250 GKLSKLGTLDLHSNQLKEYCVEA-CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328 (429)
Q Consensus 250 ~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~ 328 (429)
.++.++++|++.+|.|+.+.... ...+++.|++++|.++.++. +..++.|+.|++++|.|+++++..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l----------- 83 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGL----------- 83 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHH-----------
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccch-----------
Confidence 34456788888888887665443 23458888888888887753 667788888888888886653210
Q ss_pred HHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC--ChhhhccCCCcEEeCCCCccccCC----hhhccc
Q 014200 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSEIWEAGEITKLDLSRNSIQELP----PELSSC 402 (429)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~--~~~~~~~~~L~~L~ls~n~i~~~~----~~l~~l 402 (429)
...+++|++|++++|+|..+ ...+..+++|+.|++.+|.++.-+ ..+..+
T Consensus 84 ------------------------~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 84 ------------------------DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp ------------------------HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred ------------------------HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 01125778888888888743 245567788888888888877533 346677
Q ss_pred ccceeec
Q 014200 403 ASLQVKF 409 (429)
Q Consensus 403 ~~L~~L~ 409 (429)
|+|+.||
T Consensus 140 P~Lk~LD 146 (175)
T PF14580_consen 140 PSLKVLD 146 (175)
T ss_dssp TT-SEET
T ss_pred ChhheeC
Confidence 8888877
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=4.2e-10 Score=115.30 Aligned_cols=220 Identities=24% Similarity=0.285 Sum_probs=110.3
Q ss_pred cCCccEEEcCCCC--CCccch-hccCCCCCCEEECCCCC-CCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEE
Q 014200 44 AVDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHNK-LSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119 (429)
Q Consensus 44 ~~~L~~L~l~~~~--i~~l~~-~~~~~~~L~~L~l~~~~-i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L 119 (429)
++++++|-+.++. +..++. .|..+|.|+.||+++|. +..+|+.++.+-+|++|+++++.+..+|..++++..|++|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 4456676666664 444444 36667777777777654 5567777777777777777777777777777777777777
Q ss_pred ecCCCCCC-cCCccccCCCCCCEEEcCCCccccC---CccccccCCCcEEEccCCcccccChhhhhcccccc----eeec
Q 014200 120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSL---PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT----ELIA 191 (429)
Q Consensus 120 ~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l 191 (429)
++..+.-. .++.....+.+|++|.+........ -..+..+.+|+.+....... .+.. .+...+.|. .+.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e-~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLE-DLLGMTRLRSLLQSLSI 701 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHh-hhhhhHHHHHHhHhhhh
Confidence 77655433 3333334466777776655442211 11223334444444322211 0000 012222222 2222
Q ss_pred CCccCCcCCccccCCccCCeEeccCCcCccCCc-cc-----c-ccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCc
Q 014200 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SI-----S-GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264 (429)
Q Consensus 192 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----~-~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~ 264 (429)
.++.....+..+..+++|+.|.+.++.+.+... .. . .++++..+...++..-..+.+....|+|+.|.+.++.
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 222333334455566666666666666543211 10 0 1223333333333333333334445566666666554
Q ss_pred C
Q 014200 265 L 265 (429)
Q Consensus 265 l 265 (429)
.
T Consensus 782 ~ 782 (889)
T KOG4658|consen 782 L 782 (889)
T ss_pred c
Confidence 3
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=7.8e-11 Score=112.78 Aligned_cols=241 Identities=27% Similarity=0.352 Sum_probs=145.8
Q ss_pred CCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCC
Q 014200 67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 146 (429)
Q Consensus 67 ~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 146 (429)
+..++.+.++.|.+..+...+..+.+|+.+++.+|.+..+...+..+++|++|++++|.|..+ ..+..++.|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 444455555555555433345556666666666666665544455566666666666666655 3444555566666666
Q ss_pred CccccCCccccccCCCcEEEccCCcccccCh-hhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCcc
Q 014200 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225 (429)
Q Consensus 147 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 225 (429)
|.+..+. .+..+..|+.+++++|.+..+.. . ...+..++.+.+.+|.+..+. .+.....+..+++..|.+..+..
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~- 225 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG- 225 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC-
Confidence 6666542 33346666777777766665544 2 345666666677666664432 23333444444666666664422
Q ss_pred ccccC--CCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCC----CCcc-ccCCC
Q 014200 226 ISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPPE-IGKMT 298 (429)
Q Consensus 226 ~~~~~--~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~----l~~~-l~~~~ 298 (429)
+.... +|+.+++++|.+...+..+..+..+..+++.+|.+..+........+..+....+.+.. .... ....+
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 12222 37888888888877766677778888888888888776665555556666666666553 1111 45567
Q ss_pred CCCEEEccCCCCCC
Q 014200 299 TLRKLLLTGNPLRT 312 (429)
Q Consensus 299 ~L~~L~l~~~~i~~ 312 (429)
.++.+.+..+++..
T Consensus 306 ~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 306 TLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccCcccc
Confidence 78888888887754
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=1.7e-09 Score=110.93 Aligned_cols=197 Identities=24% Similarity=0.300 Sum_probs=132.0
Q ss_pred CCccEEEcCCCCCCccchhccCCCCCCEEECCCCC--CCCcch-hhhCCCCCcEeecCCC-cCccCCccccCCCCcCEEe
Q 014200 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFD 120 (429)
Q Consensus 45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~--i~~~~~-~l~~l~~L~~L~l~~~-~i~~l~~~~~~~~~L~~L~ 120 (429)
...+++.+-++.+..++.. ..+++|++|-+.++. +..++. .|..+|.|++||+++| .+..+|..++.+-+||+|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4578888888877777654 345689999988885 666655 5888999999999988 7779999999999999999
Q ss_pred cCCCCCCcCCccccCCCCCCEEEcCCCccc-cCCccccccCCCcEEEccCCccc--ccChhhhhcccccceeecCCccCC
Q 014200 121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWTMLTELIASKNLLN 197 (429)
Q Consensus 121 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~ 197 (429)
++++.+..+|..+..+.+|.+|++..+... .++.....+++|++|.+...... .....-+..+.+|+.+.......
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 999999999999999999999999877433 44556666899999988665411 11111133344444444422222
Q ss_pred cCCccccCCccCC----eEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200 198 GMPETIGSLSRLI----RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243 (429)
Q Consensus 198 ~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~ 243 (429)
.+-..+....+|. .+.+.++.....+..+..+.+|+.|.+.++.+.
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 1111112222222 333333333444556667777777777777665
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=1.8e-10 Score=110.35 Aligned_cols=214 Identities=27% Similarity=0.327 Sum_probs=105.4
Q ss_pred cceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcC
Q 014200 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265 (429)
Q Consensus 186 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l 265 (429)
++.+.++.+.+...-..+..+.+++.+++.+|.+..+...+..+++|+++++++|.|+++. .+..++.|+.|++.+|.+
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI 152 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc
Confidence 3333344444433222233444455555555554444333444555555555555555442 233333455555555555
Q ss_pred ccccchhhccccCEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCC
Q 014200 266 KEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344 (429)
Q Consensus 266 ~~~~~~~~~~~L~~l~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (429)
..+........++.+++++|.++.+... ...+.+++.+.+.+|.+..+.......... .. .+....+......
T Consensus 153 ~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~----~~--~l~~n~i~~~~~l 226 (414)
T KOG0531|consen 153 SDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLV----LL--SLLDNKISKLEGL 226 (414)
T ss_pred hhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHH----Hh--hcccccceeccCc
Confidence 5444444344455555555555554332 344555555555555554332111000000 00 0000000000000
Q ss_pred hhhHHhhhhcccc--ccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccc
Q 014200 345 KEDLITMATRLSV--TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKES 418 (429)
Q Consensus 345 ~~~~~~~~~~~~~--~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~ 418 (429)
.... .|+.++++++.+..++..+..+..+..+++++|++..+.. +...+.+..++ ..+|++.
T Consensus 227 ---------~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~--~~~~~~~ 290 (414)
T KOG0531|consen 227 ---------NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELW--LNDNKLA 290 (414)
T ss_pred ---------ccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhc--cCcchhc
Confidence 0001 3788999999998887778888999999999998876422 34456666777 7777765
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.2e-09 Score=71.17 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=52.8
Q ss_pred cccccccccCCccccCCh-hhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcc
Q 014200 357 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKE 417 (429)
Q Consensus 357 ~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i 417 (429)
++|+.|++++|+++.+|. .+..+++|++|++++|.++. -|.++.++++|++|+ +++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~--l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLD--LSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEE--ETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEe--CcCCcC
Confidence 478999999999999986 45589999999999999999 556889999999999 999986
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=2.6e-10 Score=109.20 Aligned_cols=180 Identities=26% Similarity=0.247 Sum_probs=124.0
Q ss_pred CccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhh----------cCCCCCCEEECCCCcCcccc
Q 014200 200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL----------GKLSKLGTLDLHSNQLKEYC 269 (429)
Q Consensus 200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~----------~~~~~L~~L~l~~n~l~~~~ 269 (429)
|-.+..+.+|+.|.+.++++........--..|++|.-. +.++.+-..| -.+..|.+.++++|.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 444556677888888888776533222222334444222 1111111111 01235788888999888766
Q ss_pred chhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhH
Q 014200 270 VEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348 (429)
Q Consensus 270 ~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (429)
....... ++.|+|+.|+++++. .+..|+.|+.|+++.|.+..++-....|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~g---------------------------- 231 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVG---------------------------- 231 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhh----------------------------
Confidence 5544433 899999999999875 6888999999999999988776443333
Q ss_pred HhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCC--hhhcccccceeeccccCCCccccc
Q 014200 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQVKFSDLVTNKESCI 420 (429)
Q Consensus 349 ~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~--~~l~~l~~L~~L~~~l~~n~i~~i 420 (429)
+.|..|.++||-++++- ++.++.+|+.||+++|-+.+.. +-++.+..|+.|+ |.||++-|-
T Consensus 232 --------c~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~--LeGNPl~c~ 294 (1096)
T KOG1859|consen 232 --------CKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW--LEGNPLCCA 294 (1096)
T ss_pred --------hhheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh--hcCCccccC
Confidence 24678899999998776 7788999999999999888722 3467788999999 999998773
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=1e-08 Score=69.31 Aligned_cols=57 Identities=35% Similarity=0.587 Sum_probs=27.9
Q ss_pred CccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCc
Q 014200 46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~ 102 (429)
+|++|++++|+++.++. .|.++++|++|++++|.++.+++ +|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555554443 34445555555555555544432 44555555555555443
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.62 E-value=2.3e-08 Score=61.84 Aligned_cols=41 Identities=44% Similarity=0.548 Sum_probs=30.9
Q ss_pred CCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200 380 GEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG 422 (429)
Q Consensus 380 ~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~ 422 (429)
++|++|++++|+|+++|..+++|++|++|+ +++|+|+++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~--l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLN--LSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEE--ETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEE--ecCCCCCCCcC
Confidence 467888888888888777788888888888 88888887654
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=1.1e-07 Score=95.51 Aligned_cols=106 Identities=26% Similarity=0.428 Sum_probs=87.5
Q ss_pred cCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200 277 LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (429)
Q Consensus 277 L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (429)
++.|+|++|.+.+ +|..+..+++|+.|++++|.++ |..+..+..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------g~iP~~~~~--------------------------- 464 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------GNIPPSLGS--------------------------- 464 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------CcCChHHhC---------------------------
Confidence 7889999999987 7888999999999999999884 333332221
Q ss_pred ccccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc-CChhhccc-ccceeeccccCCCcccc
Q 014200 356 SVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSC-ASLQVKFSDLVTNKESC 419 (429)
Q Consensus 356 ~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l-~~L~~L~~~l~~n~i~~ 419 (429)
.++|+.|++++|+++ .+|+.+..+++|+.|+|++|++++ +|..+... .++..++ +.+|+..|
T Consensus 465 l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~--~~~N~~lc 529 (623)
T PLN03150 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN--FTDNAGLC 529 (623)
T ss_pred CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE--ecCCcccc
Confidence 258899999999998 789999999999999999999998 99888763 4677888 99988665
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.6e-08 Score=85.20 Aligned_cols=199 Identities=20% Similarity=0.212 Sum_probs=132.5
Q ss_pred CCCEEECCCCCCCCcch--hh-hCCCCCcEeecCCCcCc---cCCccccCCCCcCEEecCCCCCCcCCccc-cCCCCCCE
Q 014200 69 LLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIM---KIPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSD 141 (429)
Q Consensus 69 ~L~~L~l~~~~i~~~~~--~l-~~l~~L~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~ 141 (429)
-++.+.+.++.|.+... .| ..+.+++.+++.+|.++ .+...+.++|.|+.|+++.|++..-.... ....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44556666666664432 22 45778888888888777 44445678889999999888877443444 35668899
Q ss_pred EEcCCCccc--cCCccccccCCCcEEEccCCccccc--Chhhhhcc-cccceeecCCccCC---cCCccccCCccCCeEe
Q 014200 142 FKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVL--SNNLIASW-TMLTELIASKNLLN---GMPETIGSLSRLIRLD 213 (429)
Q Consensus 142 L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~-~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~ 213 (429)
+.+.+..+. .....+..+|.+++++++.|.+..+ .......+ +.++++.+.+|... .+..-...+|++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 999888665 4455677788899999988855422 22222333 35667776666442 1222234467788888
Q ss_pred ccCCcCccCC--ccccccCCCcEEEcCCCCCCcc--ChhhcCCCCCCEEECCCCcCcc
Q 014200 214 LHQNRILSIP--SSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKE 267 (429)
Q Consensus 214 l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~ 267 (429)
+..|++.... ......+.+..|+++.+.+.+. ...+..++.|..|.++++.+.+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 8888776442 3445566777788888888755 3457788888888888887764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=1.4e-09 Score=104.38 Aligned_cols=197 Identities=23% Similarity=0.219 Sum_probs=124.3
Q ss_pred hCCCCCcEeecCCC---cCccCCccccCCCCcCEEecCCCCCCcCCccccCC-CCCCEEEcCCCccc----------cCC
Q 014200 88 GELHMLKSLDVSFN---SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC-LNLSDFKASNNCIT----------SLP 153 (429)
Q Consensus 88 ~~l~~L~~L~l~~~---~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~~~----------~~~ 153 (429)
.-+++++.|.+-.- .-+. |-.+..+.+|+.|.+.++.+... ..+..+ .+|++|.+.+.--. .+.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence 34455555554332 1111 44566678888999988887753 222222 25666655432100 111
Q ss_pred ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCc
Q 014200 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233 (429)
Q Consensus 154 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 233 (429)
.+ .....|...++++|.+..+... +.-++.++.|++++|++.++. .+..+++|++|+++.|.+..+|..-....+|.
T Consensus 159 ns-~~Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 159 NS-PVWNKLATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQ 235 (1096)
T ss_pred cc-hhhhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhhe
Confidence 11 1124677778888877765443 667788888888888887775 67788888888888888887775433333488
Q ss_pred EEEcCCCCCCccChhhcCCCCCCEEECCCCcCccc---cchhhccccCEEEccCCCCCCC
Q 014200 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY---CVEACQLRLSVLDLSNNSLSGL 290 (429)
Q Consensus 234 ~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~l~l~~n~l~~l 290 (429)
.|.+++|.++.+- .+.++.+|..||+++|-+.+. .+......|+.|+|.||.+---
T Consensus 236 ~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 236 LLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 8888888877652 456677888888888876643 3333334477788888776543
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.48 E-value=1.1e-08 Score=78.05 Aligned_cols=112 Identities=26% Similarity=0.417 Sum_probs=71.2
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhcc-CCCCCCEEECCCCCCCCcchhhh
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIG 88 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~l~ 88 (429)
-+..+||+.|.+..++..+..-.+ ..+|+..++++|.+..+|..|. .++.++.+++++|.+..+|..+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~----------~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A 97 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSK----------GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA 97 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhC----------CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh
Confidence 345566777766655544433221 3456667777777777766543 34567777777777777777677
Q ss_pred CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc
Q 014200 89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131 (429)
Q Consensus 89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~ 131 (429)
.++.|+.|+++.|.+...|..+..+.++-+|+..++....++.
T Consensus 98 am~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred hhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 7777777777777776666666556666666666666665543
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=7.2e-07 Score=89.66 Aligned_cols=102 Identities=28% Similarity=0.444 Sum_probs=65.3
Q ss_pred CCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEecCCCCCC-cCCccccCCCCCCEEEcCC
Q 014200 70 LTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASN 146 (429)
Q Consensus 70 L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~ 146 (429)
++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++. .+|..+..+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566667666665 45666667777777777777665 55666666777777777777666 5566666677777777777
Q ss_pred Cccc-cCCcccccc-CCCcEEEccCCc
Q 014200 147 NCIT-SLPEDLADC-SKMSKLDVEGNK 171 (429)
Q Consensus 147 ~~~~-~~~~~l~~~-~~L~~L~l~~~~ 171 (429)
|.+. .+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 7665 555554432 345566666553
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=8.3e-09 Score=89.10 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=67.2
Q ss_pred ccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCC-CcchhhhCCCCCcEeecCCC-cCccCC--ccccCCCCcCEEe
Q 014200 47 LQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIMKIP--DEIGSATALVKFD 120 (429)
Q Consensus 47 L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~-~i~~l~--~~~~~~~~L~~L~ 120 (429)
+++++++...++ .+..-+..|.+|+.|.+.|+.+. .+...+++..+|+.|+++.+ .+++.. -.+.+|+.|+.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 666777666665 33334566777777777777666 33345667777777777765 444321 2255677777777
Q ss_pred cCCCCCCc-C-CccccC-CCCCCEEEcCCCccc----cCCccccccCCCcEEEccCC
Q 014200 121 CSSNQLKE-L-PSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGN 170 (429)
Q Consensus 121 l~~~~l~~-~-~~~~~~-~~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~ 170 (429)
+++|.+.. . -..+.+ -++|+.|+++|+.-. .+..-...+++|.+||++++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 77665441 1 011111 135555666554211 12222344556666666554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.6e-08 Score=86.10 Aligned_cols=62 Identities=23% Similarity=0.075 Sum_probs=44.9
Q ss_pred HHhhhhccccccccccccCCc-cc-cCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeec
Q 014200 348 LITMATRLSVTSKELSLEGMN-LS-AIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKF 409 (429)
Q Consensus 348 ~~~~~~~~~~~L~~l~l~~~~-i~-~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~ 409 (429)
.++....-+++|.+||+++|. ++ ..-..++.++-|++|.+++|+--. .--.+...|+|.+||
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD 369 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence 345555667899999999875 44 344566688999999999997322 223467789999999
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=1.5e-07 Score=80.39 Aligned_cols=156 Identities=22% Similarity=0.209 Sum_probs=77.9
Q ss_pred cCCCCcCEEecCCCCCC-cCC----ccccCCCCCCEEEcCCCccccCCc--------------cccccCCCcEEEccCCc
Q 014200 111 GSATALVKFDCSSNQLK-ELP----SSLGRCLNLSDFKASNNCITSLPE--------------DLADCSKMSKLDVEGNK 171 (429)
Q Consensus 111 ~~~~~L~~L~l~~~~l~-~~~----~~~~~~~~L~~L~l~~~~~~~~~~--------------~l~~~~~L~~L~l~~~~ 171 (429)
-+||+|+.++++.|.+. ..| +.+++.+.|.+|.+++|.+..+.. ....-|.|+.+....|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34455555555554443 111 233444555555555555442211 12234566666666665
Q ss_pred ccccChhh----hhcccccceeecCCccCCc--C----CccccCCccCCeEeccCCcCc-----cCCccccccCCCcEEE
Q 014200 172 LTVLSNNL----IASWTMLTELIASKNLLNG--M----PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFY 236 (429)
Q Consensus 172 ~~~~~~~~----~~~~~~L~~L~l~~~~l~~--~----~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~ 236 (429)
+...+... +.....|+++.+..|.+.. + -..+..+.+|+.|+++.|.++ .+..++..++.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 55433221 2222456666666665531 1 112344566777777777665 2234455666677777
Q ss_pred cCCCCCCc-----cChhh--cCCCCCCEEECCCCcCc
Q 014200 237 MGNNALSA-----LPAEL--GKLSKLGTLDLHSNQLK 266 (429)
Q Consensus 237 l~~n~i~~-----~~~~~--~~~~~L~~L~l~~n~l~ 266 (429)
+..|.++. +...+ ...|+|..|...+|.+.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 77776651 11222 23566777777666543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=5.1e-08 Score=74.54 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=83.1
Q ss_pred cCEEEccCCCCCCCCcc---ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhh
Q 014200 277 LSVLDLSNNSLSGLPPE---IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353 (429)
Q Consensus 277 L~~l~l~~n~l~~l~~~---l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (429)
+..++|+.|++..+++. +.+...|..+++++|.++++|..+-
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft----------------------------------- 73 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT----------------------------------- 73 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh-----------------------------------
Confidence 55677777777765554 3444556667888888876654321
Q ss_pred ccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccccc
Q 014200 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGC 423 (429)
Q Consensus 354 ~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~ 423 (429)
..++.++.+++++|.|+.+|+++..++.|+.|+++.|.+...|+.+..+.++-+|| .-+|.+-.||-.
T Consensus 74 ~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld--s~~na~~eid~d 141 (177)
T KOG4579|consen 74 IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD--SPENARAEIDVD 141 (177)
T ss_pred hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc--CCCCccccCcHH
Confidence 11235678899999999999999899999999999999999888888888888888 888887777654
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.9e-07 Score=79.00 Aligned_cols=198 Identities=20% Similarity=0.120 Sum_probs=121.5
Q ss_pred cCCeEeccCCcCccCCc---cccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccchh-hc-cccCE
Q 014200 208 RLIRLDLHQNRILSIPS---SISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVEA-CQ-LRLSV 279 (429)
Q Consensus 208 ~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~-~~L~~ 279 (429)
.++-+.+.++.+..... .-..++.++++++.+|.+++. ...+..+|.|++|+++.|++....... .+ .+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455666666553321 224577888999999988844 445678999999999999887433222 23 34899
Q ss_pred EEccCCCCCC--CCccccCCCCCCEEEccCCCCCCc--cccccCCCc--HHHHHHHHhcCCCCCcccccCChhhH--Hhh
Q 014200 280 LDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTL--RSSLVNGPT--PALLKYLRSRLPENEDSEASTTKEDL--ITM 351 (429)
Q Consensus 280 l~l~~n~l~~--l~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 351 (429)
+.+.|..+.- ....+..+|.+++++++.|....+ ++....... ...++. .+.....+ ...
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~------------~~c~~~~w~~~~~ 193 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ------------LPCLEQLWLNKNK 193 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc------------CCcHHHHHHHHHh
Confidence 9988876543 444567777888888887754322 111111100 000100 00000111 112
Q ss_pred hhccccccccccccCCccccC--ChhhhccCCCcEEeCCCCcccc--CChhhcccccceeeccccCCCcccc
Q 014200 352 ATRLSVTSKELSLEGMNLSAI--PSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 352 ~~~~~~~L~~l~l~~~~i~~~--~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
.....+++..+-+..|.++.. .+....+|.+-.|+|+.|+|.+ -.+.+..++.|+-|. ++++++.+
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlR--v~~~Pl~d 263 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLR--VSENPLSD 263 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheee--ccCCcccc
Confidence 234457788888888887743 3344467778888898888886 446678888888888 88888765
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=1.9e-07 Score=79.83 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=84.6
Q ss_pred ccccccCCCcEEEcCCCCCC-ccChh----hcCCCCCCEEECCCCcCccccchh---------------hccccCEEEcc
Q 014200 224 SSISGCCSLAEFYMGNNALS-ALPAE----LGKLSKLGTLDLHSNQLKEYCVEA---------------CQLRLSVLDLS 283 (429)
Q Consensus 224 ~~~~~~~~L~~L~l~~n~i~-~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~---------------~~~~L~~l~l~ 283 (429)
.++.+||+++.++++.|.+. .+|+. +++...|++|.+++|.+..+...- ..+.|+.+...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 34567777777888777766 34433 456667777777777765432211 11225555555
Q ss_pred CCCCCCCCc-----cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccc
Q 014200 284 NNSLSGLPP-----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 358 (429)
Q Consensus 284 ~n~l~~l~~-----~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (429)
.|.+...+. .+..-.+|+.+.+..|.|.-- | ...+.+. -...+.+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpe------g--v~~L~~~----------------------gl~y~~~ 215 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPE------G--VTMLAFL----------------------GLFYSHS 215 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcc------h--hHHHHHH----------------------HHHHhCc
Confidence 555544222 122224555555555554210 0 0011110 0122346
Q ss_pred cccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc--CC---hhhc--ccccceeeccccCCCcccc
Q 014200 359 SKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE--LP---PELS--SCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 359 L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~--~~---~~l~--~l~~L~~L~~~l~~n~i~~ 419 (429)
|+.||+..|.++ .+...+..++.|++|.+-.|.++. .. ..+. ..|.|..|. ..+|.+.+
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~--~~Yne~~~ 286 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLP--GDYNERRG 286 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccc--cchhhhcC
Confidence 677777777666 233344456667777777776553 21 2222 245666666 66666544
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.25 E-value=2.2e-06 Score=70.24 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=81.6
Q ss_pred ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccC-CCCcCEEecCCCC
Q 014200 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQ 125 (429)
Q Consensus 47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~-~~~L~~L~l~~~~ 125 (429)
=+.+++++.++..+..-=.-..+...+|+++|.+..+ ..|..++.|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3556666555544332112234566788888877655 3566778888888888888877665543 5678888888888
Q ss_pred CCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEccCC
Q 014200 126 LKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVEGN 170 (429)
Q Consensus 126 l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~ 170 (429)
+..+. ..+..|++|+.|.+-+|+++.... .+..+++|+.||+++-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77553 356677888888888887774322 3566778888887653
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=8.2e-06 Score=75.76 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=82.5
Q ss_pred cCCccCCeEeccCCcCccCCccccccCCCcEEEcCCC-CCCccChhhcCCCCCCEEECCCC-cCccccchhhccccCEEE
Q 014200 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN-ALSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLD 281 (429)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~L~~l~ 281 (429)
..+.+++.|++++|.+..+|. -.++|++|.+++| .++.+|..+ .++|+.|++++| .+..+ +.+|+.|+
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~ 118 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLE 118 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEE
Confidence 345778888888887777762 3446888888775 555666544 247777777776 44433 33477777
Q ss_pred ccCCCCCC---CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccc
Q 014200 282 LSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 358 (429)
Q Consensus 282 l~~n~l~~---l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (429)
++++.... +|. +|+.|.+.++.-.. . ......+|++
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~------~-----------------------------~~lp~~LPsS 157 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPEN------Q-----------------------------ARIDNLISPS 157 (426)
T ss_pred eCCCCCcccccCcc------hHhheecccccccc------c-----------------------------cccccccCCc
Confidence 76654433 333 45555553321100 0 0000124578
Q ss_pred cccccccCCccccCChhhhccCCCcEEeCCCCc
Q 014200 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391 (429)
Q Consensus 359 L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~ 391 (429)
|+.|++++|....+|..+- .+|++|+++.|.
T Consensus 158 Lk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 158 LKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred ccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 9999999998877665443 689999998873
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=3.4e-06 Score=52.12 Aligned_cols=38 Identities=42% Similarity=0.675 Sum_probs=18.4
Q ss_pred CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc
Q 014200 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL 83 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~ 83 (429)
+|++|++++|+++.++..++++++|+.|++++|.++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555554455555555555555554443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=1.3e-05 Score=74.41 Aligned_cols=118 Identities=17% Similarity=0.230 Sum_probs=81.6
Q ss_pred hhcccccceeecCCccCCcCCccccCCccCCeEeccCCc-CccCCccccccCCCcEEEcCCC-CCCccChhhcCCCCCCE
Q 014200 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNN-ALSALPAELGKLSKLGT 257 (429)
Q Consensus 180 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~ 257 (429)
+..+..++.|++++|.++.+|. -.++|+.|.+.+|. +..+|..+ .++|++|.+++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 4557889999999998888883 34579999999864 45566544 468999999998 6666664 5888
Q ss_pred EECCCCcCccccchhhccccCEEEccCCC-C--CCCCccccCCCCCCEEEccCCCCCC
Q 014200 258 LDLHSNQLKEYCVEACQLRLSVLDLSNNS-L--SGLPPEIGKMTTLRKLLLTGNPLRT 312 (429)
Q Consensus 258 L~l~~n~l~~~~~~~~~~~L~~l~l~~n~-l--~~l~~~l~~~~~L~~L~l~~~~i~~ 312 (429)
|++..+....+. ..+.+|++|.+.+++ . ..++..+ .++|+.|++++|....
T Consensus 117 L~L~~n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 117 LEIKGSATDSIK--NVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII 170 (426)
T ss_pred EEeCCCCCcccc--cCcchHhheecccccccccccccccc--CCcccEEEecCCCccc
Confidence 888776655432 345568888885432 1 1122211 2589999999987543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=9.4e-06 Score=66.65 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=84.3
Q ss_pred CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchh-hhCCCCCcEeecCCCcCccCCc--cccCCCCcCEEecC
Q 014200 46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCS 122 (429)
Q Consensus 46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~ 122 (429)
....+++++|.+..++ .|..++.|.+|.+.+|.|+.+.+. -..+++|+.|.+.+|.+..+.+ .+..||+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4678999999988776 688899999999999999988554 4667899999999999986644 36789999999999
Q ss_pred CCCCCcCC----ccccCCCCCCEEEcCCCccc
Q 014200 123 SNQLKELP----SSLGRCLNLSDFKASNNCIT 150 (429)
Q Consensus 123 ~~~l~~~~----~~~~~~~~L~~L~l~~~~~~ 150 (429)
+|++..-. .-+..+++|++|++.+-...
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 99887443 24668899999998765433
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.90 E-value=1.3e-05 Score=63.27 Aligned_cols=118 Identities=25% Similarity=0.474 Sum_probs=55.5
Q ss_pred cccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCc
Q 014200 40 KWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATAL 116 (429)
Q Consensus 40 ~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L 116 (429)
.|++|.+|+.+.+.. .+..++. .|.++++|+.+.+.++ +..++. +|.++++++.+.+.+ .+..++. .+..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344466778777764 4666655 4777777888887664 666654 677777788888765 3444433 35567788
Q ss_pred CEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccCC-ccccccCCCc
Q 014200 117 VKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMS 163 (429)
Q Consensus 117 ~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~ 163 (429)
+.+.+..+ +..++. .+..+ +++.+.+.. .+..++ ..|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 88887654 554543 34444 777777765 333332 3455555553
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.89 E-value=6.8e-07 Score=81.03 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=31.7
Q ss_pred HhhhhccccccccccccCCccc--c----CChhhhccCCCcEEeCCCCcc-cc-CChhhcccccceeeccccCCCc
Q 014200 349 ITMATRLSVTSKELSLEGMNLS--A----IPSEIWEAGEITKLDLSRNSI-QE-LPPELSSCASLQVKFSDLVTNK 416 (429)
Q Consensus 349 ~~~~~~~~~~L~~l~l~~~~i~--~----~~~~~~~~~~L~~L~ls~n~i-~~-~~~~l~~l~~L~~L~~~l~~n~ 416 (429)
.......++.|+.+.+++|... + +...-.....|+.+.++++.. ++ ..+.+..|+.|+.++ +-+++
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~--l~~~q 437 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE--LIDCQ 437 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee--eechh
Confidence 3344444555666666655322 1 111122344555666666643 23 445555566666655 55443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=1.7e-05 Score=79.90 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCCCCEEECCCCCCC--CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCC--ccccCCCCCCE
Q 014200 66 NLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSD 141 (429)
Q Consensus 66 ~~~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~ 141 (429)
.+|.|+.|.+.+-.+. ++.....++|+|..||++++.++.+ .++..+++|+.|.+.+=.+.... ..++.+++|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3566666666554433 2233445566666666666655544 34555555655555543333211 23455666666
Q ss_pred EEcCCCccccCC-------ccccccCCCcEEEccCCccc
Q 014200 142 FKASNNCITSLP-------EDLADCSKMSKLDVEGNKLT 173 (429)
Q Consensus 142 L~l~~~~~~~~~-------~~l~~~~~L~~L~l~~~~~~ 173 (429)
|++|.......+ +.-..+|.|+.||.+++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 666554333211 11223566666666665544
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.85 E-value=6.7e-05 Score=59.20 Aligned_cols=103 Identities=17% Similarity=0.337 Sum_probs=40.6
Q ss_pred HHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCC
Q 014200 4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE 82 (429)
Q Consensus 4 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~ 82 (429)
+|.++++++.+.+.. .+..|+...|.. +.+++.+.+..+ +..++. .|.++++++.+.+.+ .+..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~------------~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSN------------CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-------------TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccc------------cccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence 445555555555553 344555555543 444555555442 444443 355555555555543 3333
Q ss_pred cch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCC
Q 014200 83 LPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSS 123 (429)
Q Consensus 83 ~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~ 123 (429)
++. .|..+++|+.+++..+ +..++. .+.++ +++.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 332 4555555555555443 333322 23444 555555543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=1.4e-05 Score=80.49 Aligned_cols=102 Identities=26% Similarity=0.272 Sum_probs=47.9
Q ss_pred CCCCEEECCCCCCC--Ccchhh-hCCCCCcEeecCCCcCc--cCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEE
Q 014200 68 PLLTVLNVSHNKLS--ELPAAI-GELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF 142 (429)
Q Consensus 68 ~~L~~L~l~~~~i~--~~~~~l-~~l~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L 142 (429)
.+|+.|+++|...- ..|..+ ..+|+|+.|.+.+-.+. .+.....++|+|..|++++++++.+ .+++++.+|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35555555554311 222222 23555555555554332 1112234455555556655555554 445555555555
Q ss_pred EcCCCccccCC--ccccccCCCcEEEccCC
Q 014200 143 KASNNCITSLP--EDLADCSKMSKLDVEGN 170 (429)
Q Consensus 143 ~l~~~~~~~~~--~~l~~~~~L~~L~l~~~ 170 (429)
.+.+-.+.... ..+..+.+|+.||+|..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 55444443211 23445555555655544
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=2e-06 Score=78.09 Aligned_cols=284 Identities=16% Similarity=0.116 Sum_probs=162.5
Q ss_pred hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCC-CCc--cchhccCCCCCCEEECCCCC-CCCc--
Q 014200 10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IEK--LKEDLRNLPLLTVLNVSHNK-LSEL-- 83 (429)
Q Consensus 10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~--l~~~~~~~~~L~~L~l~~~~-i~~~-- 83 (429)
.++.|.++++.= ++......... .|+++++|.+.++. +++ ....-+.|++++.+++..|. ++..
T Consensus 139 ~lk~LSlrG~r~--v~~sslrt~~~--------~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRA--VGDSSLRTFAS--------NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccc--CCcchhhHHhh--------hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 678888888752 22222222111 58999999998874 432 22223679999999999964 5532
Q ss_pred chhhhCCCCCcEeecCCC-cCc--cCCccccCCCCcCEEecCCCCCC---cCCccccCCCCCCEEEcCCC-ccccC--Cc
Q 014200 84 PAAIGELHMLKSLDVSFN-SIM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN-CITSL--PE 154 (429)
Q Consensus 84 ~~~l~~l~~L~~L~l~~~-~i~--~l~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~~-~~~~~--~~ 154 (429)
.....++++|+++++++| ++. .+.....++..++.+...+|.=. .+...-..+.-+..+++..+ .++.. ..
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 224468999999999998 555 34444667777777776654311 11112223344445554444 22211 11
Q ss_pred cccccCCCcEEEccCCc-ccccChh-hhhcccccceeecCCccC-CcC--CccccCCccCCeEeccCCcCc---cCCccc
Q 014200 155 DLADCSKMSKLDVEGNK-LTVLSNN-LIASWTMLTELIASKNLL-NGM--PETIGSLSRLIRLDLHQNRIL---SIPSSI 226 (429)
Q Consensus 155 ~l~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~l-~~~--~~~~~~~~~L~~L~l~~~~~~---~~~~~~ 226 (429)
.-..+..|+.++.+++. +++.... .-.++.+|+.+.+++++. +.. ..--.+++.|+.+++.++... .+-+.-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 12345677888877653 2222211 123457788888877753 221 111245677888888877554 233445
Q ss_pred cccCCCcEEEcCCCC-CCcc-----ChhhcCCCCCCEEECCCCcCcc---ccchhhccccCEEEccCCCC-CC--CCccc
Q 014200 227 SGCCSLAEFYMGNNA-LSAL-----PAELGKLSKLGTLDLHSNQLKE---YCVEACQLRLSVLDLSNNSL-SG--LPPEI 294 (429)
Q Consensus 227 ~~~~~L~~L~l~~n~-i~~~-----~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~L~~l~l~~n~l-~~--l~~~l 294 (429)
.+|+.++.+.++.|. +++- ...-..+..++.+.++++.... +.......+|+++++-+++- +. +.+.-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 678888888888773 4422 1222455678888888886542 22222333588887766632 22 44445
Q ss_pred cCCCCCCEE
Q 014200 295 GKMTTLRKL 303 (429)
Q Consensus 295 ~~~~~L~~L 303 (429)
.++|+++..
T Consensus 449 ~~lp~i~v~ 457 (483)
T KOG4341|consen 449 THLPNIKVH 457 (483)
T ss_pred hhCccceeh
Confidence 566666543
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=1.4e-05 Score=68.89 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=67.8
Q ss_pred cCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCc--cccCCCCCCEEEcc
Q 014200 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLT 306 (429)
Q Consensus 229 ~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~--~l~~~~~L~~L~l~ 306 (429)
+.+.++|+.++|.++++ .....++.|+.|.++-|.|+.+.+..-+.+|++|+|+.|.|.++.. .+.++|+|+.|.+.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 44567788888888765 2456788999999999999988888777789999999999988754 47899999999999
Q ss_pred CCCCCC
Q 014200 307 GNPLRT 312 (429)
Q Consensus 307 ~~~i~~ 312 (429)
.|+...
T Consensus 97 ENPCc~ 102 (388)
T KOG2123|consen 97 ENPCCG 102 (388)
T ss_pred cCCccc
Confidence 998754
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=3.5e-05 Score=66.55 Aligned_cols=81 Identities=23% Similarity=0.207 Sum_probs=46.4
Q ss_pred hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch--h
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--A 86 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~--~ 86 (429)
.+++.|++.++.+++|.-. + +++.|+.|.|+-|.|+.+. .+..|++|++|+|+.|.|..+.+ .
T Consensus 19 ~~vkKLNcwg~~L~DIsic--~------------kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISIC--E------------KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHhhhhcccCCCccHHHHH--H------------hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3555666666666655321 1 2455666666666666554 35566666666666666665533 4
Q ss_pred hhCCCCCcEeecCCCcCc
Q 014200 87 IGELHMLKSLDVSFNSIM 104 (429)
Q Consensus 87 l~~l~~L~~L~l~~~~i~ 104 (429)
+.++|+|+.|-+..|...
T Consensus 84 LknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcCchhhhHhhccCCcc
Confidence 566666666666655443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.0004 Score=59.75 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=63.8
Q ss_pred CCccEEEcCCCCCCccchhccCCCCCCEEECCCCCC--C-CcchhhhCCCCCcEeecCCCcCccCC--ccccCCCCcCEE
Q 014200 45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL--S-ELPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKF 119 (429)
Q Consensus 45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i--~-~~~~~l~~l~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L 119 (429)
..++.+.+.+..++.+. .|..+++|++|.++.|.. . .++.....+|+|++++++.|.+..+. ..+..+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 44666666665555443 356677888888888843 2 33344456688899998888776321 225567778888
Q ss_pred ecCCCCCCcCC----ccccCCCCCCEEEcCCC
Q 014200 120 DCSSNQLKELP----SSLGRCLNLSDFKASNN 147 (429)
Q Consensus 120 ~l~~~~l~~~~----~~~~~~~~L~~L~l~~~ 147 (429)
++.+|.....- ..+.-+++|+.++-...
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88877665332 13445567777654433
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.68 E-value=0.00064 Score=34.87 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=7.9
Q ss_pred CcEEeCCCCccccCChh
Q 014200 382 ITKLDLSRNSIQELPPE 398 (429)
Q Consensus 382 L~~L~ls~n~i~~~~~~ 398 (429)
|++|||++|+|+.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.67 E-value=0.00055 Score=67.30 Aligned_cols=130 Identities=21% Similarity=0.168 Sum_probs=78.7
Q ss_pred HHHHhhhcCeeeccCC-CCccCChhhhhhhccccCCCcccccCCccEEEcCCC-C-CCccc----hhccCCCCCCEEECC
Q 014200 4 ILKAARTSGSLNLSNR-SLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-N-IEKLK----EDLRNLPLLTVLNVS 76 (429)
Q Consensus 4 ~~~~~~~l~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-i~~l~----~~~~~~~~L~~L~l~ 76 (429)
....++.++.+.+.++ .++... .... .+.+++|+.|+++++ . +...+ .....+++|+.++++
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~--~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 251 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDS--LDAL---------ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS 251 (482)
T ss_pred HHhhCchhhHhhhcccccCChhh--HHHH---------HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence 3445678888888876 344322 1111 123788999998873 2 22111 234567889999998
Q ss_pred CCC-CCCcc-hh-hhCCCCCcEeecCCCc-Cc--cCCccccCCCCcCEEecCCCCCC---cCCccccCCCCCCEEEc
Q 014200 77 HNK-LSELP-AA-IGELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKA 144 (429)
Q Consensus 77 ~~~-i~~~~-~~-l~~l~~L~~L~l~~~~-i~--~l~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l 144 (429)
.+. +++.. .. ...+++|++|.+.+|. ++ .+......++.|++|+++++... .+......+++++.+.+
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 887 55432 22 3448899999977775 44 33344567888999999877543 12223445666666544
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0012 Score=56.91 Aligned_cols=86 Identities=26% Similarity=0.279 Sum_probs=48.6
Q ss_pred ccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCC--cCc-cCCccccCCCCcCEEecCCCCCCcCC--ccccCCCC
Q 014200 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLN 138 (429)
Q Consensus 64 ~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~--~i~-~l~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~ 138 (429)
...+..|+.+.+.+..++++ ..+-.+|+|++|.++.| ++. .++.-...+++|+++++++|++..+. ..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34455666666666665544 23446777888888877 333 33333455677777777777766421 12233344
Q ss_pred CCEEEcCCCccc
Q 014200 139 LSDFKASNNCIT 150 (429)
Q Consensus 139 L~~L~l~~~~~~ 150 (429)
|..|++..|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 555555555443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.51 E-value=0.00078 Score=66.23 Aligned_cols=105 Identities=27% Similarity=0.340 Sum_probs=45.5
Q ss_pred CCCCCEEECCCCC-CCC--cchhhhCCCCCcEeecCCC--cCccCC----ccccCCCCcCEEecCCCC-CCcC--Ccccc
Q 014200 67 LPLLTVLNVSHNK-LSE--LPAAIGELHMLKSLDVSFN--SIMKIP----DEIGSATALVKFDCSSNQ-LKEL--PSSLG 134 (429)
Q Consensus 67 ~~~L~~L~l~~~~-i~~--~~~~l~~l~~L~~L~l~~~--~i~~l~----~~~~~~~~L~~L~l~~~~-l~~~--~~~~~ 134 (429)
++.|+.+.+.++. +.. +-.....+++|+.|+++++ .+...+ .....+++|+.++++.+. ++.. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555543 222 2234445555555555542 111111 122334555555555544 3311 11112
Q ss_pred CCCCCCEEEcCCCc-cc--cCCccccccCCCcEEEccCCc
Q 014200 135 RCLNLSDFKASNNC-IT--SLPEDLADCSKMSKLDVEGNK 171 (429)
Q Consensus 135 ~~~~L~~L~l~~~~-~~--~~~~~l~~~~~L~~L~l~~~~ 171 (429)
.|++|++|.+.++. ++ .+......++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25556665544443 23 122223445556666665543
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.75 E-value=0.0057 Score=29.01 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=4.9
Q ss_pred ceeeccccCCCccccc
Q 014200 405 LQVKFSDLVTNKESCI 420 (429)
Q Consensus 405 L~~L~~~l~~n~i~~i 420 (429)
|++|+ +++|+++.+
T Consensus 3 L~~L~--l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLD--LSNNRLTSL 16 (17)
T ss_dssp -SEEE--ETSS--SSE
T ss_pred cCEEE--CCCCCCCCC
Confidence 44444 444444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.71 E-value=0.00025 Score=68.52 Aligned_cols=59 Identities=34% Similarity=0.354 Sum_probs=40.0
Q ss_pred cccccccCCccc-----cCChhhhcc-CCCcEEeCCCCcccc-----CChhhcccccceeeccccCCCcccc
Q 014200 359 SKELSLEGMNLS-----AIPSEIWEA-GEITKLDLSRNSIQE-----LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 359 L~~l~l~~~~i~-----~~~~~~~~~-~~L~~L~ls~n~i~~-----~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+..+++.+|++. .+..++..+ ..++.++++.|.|++ +.+.+..++.++++. +.+|++++
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~--l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELS--LSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhh--cccCcccc
Confidence 455777777766 233344444 566788888887764 556667777888888 88887765
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0057 Score=31.29 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.9
Q ss_pred cceeeccccCCCccccccccc
Q 014200 404 SLQVKFSDLVTNKESCISGCY 424 (429)
Q Consensus 404 ~L~~L~~~l~~n~i~~i~~~~ 424 (429)
+|++|| +++|+|+.||+.+
T Consensus 1 ~L~~Ld--ls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLD--LSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEE--ETSSEESEEGTTT
T ss_pred CccEEE--CCCCcCEeCChhh
Confidence 589999 9999999999873
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.45 E-value=0.0066 Score=28.80 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=11.4
Q ss_pred CCCcEEeCCCCccccCC
Q 014200 380 GEITKLDLSRNSIQELP 396 (429)
Q Consensus 380 ~~L~~L~ls~n~i~~~~ 396 (429)
++|+.|+|++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 57999999999998765
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.23 E-value=0.00024 Score=68.61 Aligned_cols=179 Identities=25% Similarity=0.264 Sum_probs=93.3
Q ss_pred cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCc-----cchhccCC-CCCCEEECCCCCCCC--
Q 014200 11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLSE-- 82 (429)
Q Consensus 11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~~-~~L~~L~l~~~~i~~-- 82 (429)
+..+++.+|.+.+-+...... .+..+++|+.|++++|.+.. +...+... ..+++|++..|.++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g 160 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG 160 (478)
T ss_pred HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence 555666666665444333221 11135566666776666551 11123332 445566666666552
Q ss_pred ---cchhhhCCCCCcEeecCCCcCc-----cCCcccc----CCCCcCEEecCCCCCCc-----CCccccCCCC-CCEEEc
Q 014200 83 ---LPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFKA 144 (429)
Q Consensus 83 ---~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~----~~~~L~~L~l~~~~l~~-----~~~~~~~~~~-L~~L~l 144 (429)
+.+.+....+++.++++.|.+. .++..+. ...+++++.+.++.++. +...+...+. +..+++
T Consensus 161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL 240 (478)
T ss_pred hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence 2344555666777777666553 1122222 34566667676665551 1122333343 555666
Q ss_pred CCCccccC-----Ccccccc-CCCcEEEccCCcccccChh----hhhcccccceeecCCccCC
Q 014200 145 SNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLN 197 (429)
Q Consensus 145 ~~~~~~~~-----~~~l~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~ 197 (429)
..|.+... ...+... ..++.++++.|.+...... .+..++.++++.++.|.+.
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 66655521 2233334 5667777777776643322 2344567777777777664
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.44 E-value=0.021 Score=30.54 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=14.3
Q ss_pred ccceeeccccCCCcccccccccc
Q 014200 403 ASLQVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 403 ~~L~~L~~~l~~n~i~~i~~~~~ 425 (429)
++|++|+ +++|.|+.||+..+
T Consensus 2 ~~L~~L~--L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELD--LSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEE--CCCCcCCcCCHHHc
Confidence 4667777 77777777776654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.44 E-value=0.021 Score=30.54 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=14.3
Q ss_pred ccceeeccccCCCcccccccccc
Q 014200 403 ASLQVKFSDLVTNKESCISGCYL 425 (429)
Q Consensus 403 ~~L~~L~~~l~~n~i~~i~~~~~ 425 (429)
++|++|+ +++|.|+.||+..+
T Consensus 2 ~~L~~L~--L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELD--LSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEE--CCCCcCCcCCHHHc
Confidence 4667777 77777777776654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.57 E-value=0.05 Score=29.00 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=16.8
Q ss_pred hhcCeeeccCCCCccCChhhhh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYK 30 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~ 30 (429)
+.|+.|++++|++..+|..+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4677888888888888877765
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.57 E-value=0.05 Score=29.00 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=16.8
Q ss_pred hhcCeeeccCCCCccCChhhhh
Q 014200 9 RTSGSLNLSNRSLRDVPNEVYK 30 (429)
Q Consensus 9 ~~l~~L~l~~~~l~~~~~~~~~ 30 (429)
+.|+.|++++|++..+|..+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4677888888888888877765
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.15 E-value=0.0026 Score=53.84 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=43.2
Q ss_pred ccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEE
Q 014200 64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK 143 (429)
Q Consensus 64 ~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 143 (429)
+..++..+.||++.|.+..+...|+-++.+..|+++.|++..+|..++....+..+....|.....|.++...+.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 34444555555555554444444444445555555555555555555555555555555555555555555555555555
Q ss_pred cCCCcc
Q 014200 144 ASNNCI 149 (429)
Q Consensus 144 l~~~~~ 149 (429)
..++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.97 E-value=0.025 Score=29.52 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=8.0
Q ss_pred cCCCcEEeCCCCcccc
Q 014200 379 AGEITKLDLSRNSIQE 394 (429)
Q Consensus 379 ~~~L~~L~ls~n~i~~ 394 (429)
+++|++|+|++|+|++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 3556666666666654
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.89 E-value=0.0038 Score=52.88 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=66.9
Q ss_pred ccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEe
Q 014200 41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120 (429)
Q Consensus 41 ~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~ 120 (429)
++..+..+.|+++.+++..+...|+-+..+..|+++.|.+..+|..+.....+..++...|..+..|..++..+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 44456678888888877776666676777788888888888788888777778888888777777888888888888888
Q ss_pred cCCCCCC
Q 014200 121 CSSNQLK 127 (429)
Q Consensus 121 l~~~~l~ 127 (429)
.-++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8777654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.05 E-value=0.15 Score=27.04 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=11.4
Q ss_pred CCCcEEeCCCCccccCCh
Q 014200 380 GEITKLDLSRNSIQELPP 397 (429)
Q Consensus 380 ~~L~~L~ls~n~i~~~~~ 397 (429)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 346666666666666665
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.42 E-value=0.73 Score=24.55 Aligned_cols=16 Identities=31% Similarity=0.154 Sum_probs=9.9
Q ss_pred ccceeeccccCCCccccc
Q 014200 403 ASLQVKFSDLVTNKESCI 420 (429)
Q Consensus 403 ~~L~~L~~~l~~n~i~~i 420 (429)
.+|+.|+ +++|+|+.|
T Consensus 2 ~~L~~L~--L~~NkI~~I 17 (26)
T smart00365 2 TNLEELD--LSQNKIKKI 17 (26)
T ss_pred CccCEEE--CCCCcccee
Confidence 4566666 666666654
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.20 E-value=1.1 Score=24.30 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=9.3
Q ss_pred CCCcEEeCCCCcccc
Q 014200 380 GEITKLDLSRNSIQE 394 (429)
Q Consensus 380 ~~L~~L~ls~n~i~~ 394 (429)
++|++|||++|.|++
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456666666666653
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.60 E-value=1.5 Score=23.23 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=10.5
Q ss_pred cCCCcEEeCCCCc-ccc
Q 014200 379 AGEITKLDLSRNS-IQE 394 (429)
Q Consensus 379 ~~~L~~L~ls~n~-i~~ 394 (429)
|++|+.|+|++|. |++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4667777777774 554
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.88 E-value=0.58 Score=39.17 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=23.2
Q ss_pred CCCcEEEccCCcccccChhhhhcccccceeecCCc
Q 014200 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194 (429)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 194 (429)
..++.+|-+++.+...+...+..++.++.+.+..+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 35667777777777666665666666666666555
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.64 E-value=1.1 Score=37.56 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=50.5
Q ss_pred cCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200 277 LSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355 (429)
Q Consensus 277 L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (429)
++.++-+++.|... .+.+..++.++.|.+.+|.--+ ...+......
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d---------------------------------D~~L~~l~~~ 149 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD---------------------------------DWCLERLGGL 149 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchh---------------------------------hHHHHHhccc
Confidence 78888888777652 3446667777777777764210 1112222223
Q ss_pred ccccccccccCC-ccc-cCChhhhccCCCcEEeCCCC
Q 014200 356 SVTSKELSLEGM-NLS-AIPSEIWEAGEITKLDLSRN 390 (429)
Q Consensus 356 ~~~L~~l~l~~~-~i~-~~~~~~~~~~~L~~L~ls~n 390 (429)
.++|+.|+|++| .|+ .-..++..+++|+.|.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 467888888877 466 34556777788888877764
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.74 E-value=2.2 Score=41.44 Aligned_cols=60 Identities=27% Similarity=0.171 Sum_probs=37.5
Q ss_pred cccccccccCCcccc---CChhhhccCCCcEEeCCCC--ccccCChhhc--ccccceeeccccCCCcccc
Q 014200 357 VTSKELSLEGMNLSA---IPSEIWEAGEITKLDLSRN--SIQELPPELS--SCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 357 ~~L~~l~l~~~~i~~---~~~~~~~~~~L~~L~ls~n--~i~~~~~~l~--~l~~L~~L~~~l~~n~i~~ 419 (429)
+.+..+++++|++.. +...-...|+|+.|+|++| .+...++ +. +...|++|. +.||++..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~--l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELV--LEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHee--ecCCcccc
Confidence 466777788887763 3333346788888888888 3443222 22 234677788 88888655
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.56 E-value=59 Score=31.47 Aligned_cols=59 Identities=29% Similarity=0.240 Sum_probs=34.5
Q ss_pred cccccccCCccccC----ChhhhccCCCcEEeCCCCcccc-----CChhhcccccceeeccccCCCcccc
Q 014200 359 SKELSLEGMNLSAI----PSEIWEAGEITKLDLSRNSIQE-----LPPELSSCASLQVKFSDLVTNKESC 419 (429)
Q Consensus 359 L~~l~l~~~~i~~~----~~~~~~~~~L~~L~ls~n~i~~-----~~~~l~~l~~L~~L~~~l~~n~i~~ 419 (429)
+..+.++.+.++.- .+.+..-+.+.+|++++|...+ +|..+..-.+++... .+.|.++.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ip--ds~n~p~~ 482 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIP--DSLNLPED 482 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCC--CCCCCccc
Confidence 45666777766622 2223345677888888886543 555554445666666 66665554
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.78 E-value=4.4 Score=39.47 Aligned_cols=63 Identities=27% Similarity=0.247 Sum_probs=34.5
Q ss_pred cccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCC--cCccccc--hhhccccCEEEccCCCCCC
Q 014200 227 SGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSN--QLKEYCV--EACQLRLSVLDLSNNSLSG 289 (429)
Q Consensus 227 ~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n--~l~~~~~--~~~~~~L~~l~l~~n~l~~ 289 (429)
.+.+.+..+.+++|++..+ .......|+|++|+|++| .+..... ......|++|.+.||.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3455666666777665533 222355677777777777 2221111 1111237777777777654
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.81 E-value=54 Score=19.81 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=12.3
Q ss_pred CCCEEECCCCcCccccchhhccccCEEEc
Q 014200 254 KLGTLDLHSNQLKEYCVEACQLRLSVLDL 282 (429)
Q Consensus 254 ~L~~L~l~~n~l~~~~~~~~~~~L~~l~l 282 (429)
+++.|.+.++--..+.....+.++++|.+
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~f 41 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSF 41 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEe
Confidence 44555553332223333444444555444
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=24.26 E-value=34 Score=31.37 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=35.5
Q ss_pred HhhhhccccccccccccCCc-cc-----cCChhhhccCCCcEEeCCCCcccc-----CChhhcccccceeeccccCCCcc
Q 014200 349 ITMATRLSVTSKELSLEGMN-LS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSCASLQVKFSDLVTNKE 417 (429)
Q Consensus 349 ~~~~~~~~~~L~~l~l~~~~-i~-----~~~~~~~~~~~L~~L~ls~n~i~~-----~~~~l~~l~~L~~L~~~l~~n~i 417 (429)
........+.++.++|++.. |. ...+.+......+...+.+-..++ +...+..+++|++|+ +.+|.|
T Consensus 190 leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~sln--vesnFI 267 (353)
T KOG3735|consen 190 LERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLN--VESNFI 267 (353)
T ss_pred HHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhhee--cccccc
Confidence 33334444566666665543 21 222334444555555555544443 333444566666666 666666
Q ss_pred cc
Q 014200 418 SC 419 (429)
Q Consensus 418 ~~ 419 (429)
|+
T Consensus 268 tg 269 (353)
T KOG3735|consen 268 TG 269 (353)
T ss_pred cc
Confidence 66
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.47 E-value=57 Score=38.91 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=26.7
Q ss_pred cccCCccccCChhhh-ccCCCcEEeCCCCccc
Q 014200 363 SLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQ 393 (429)
Q Consensus 363 ~l~~~~i~~~~~~~~-~~~~L~~L~ls~n~i~ 393 (429)
||++|+|+.++...+ .+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 588999999988766 6889999999999865
Done!